Query 008162
Match_columns 575
No_of_seqs 406 out of 2889
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 19:37:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 2.7E-44 9.2E-49 362.9 31.1 256 39-327 21-278 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 5.8E-44 2E-48 361.9 26.9 253 34-313 35-291 (292)
3 3smz_A Protein raver-1, ribonu 100.0 5.3E-33 1.8E-37 280.1 26.9 207 1-218 64-272 (284)
4 4f02_A Polyadenylate-binding p 100.0 2.4E-32 8.1E-37 263.6 22.7 175 129-320 13-188 (213)
5 2ghp_A U4/U6 snRNA-associated 100.0 1.6E-32 5.6E-37 277.7 20.3 199 1-210 88-291 (292)
6 4f02_A Polyadenylate-binding p 100.0 9.2E-32 3.1E-36 259.5 22.6 176 36-216 11-187 (213)
7 3md3_A Nuclear and cytoplasmic 100.0 9.2E-31 3.1E-35 241.3 20.6 165 132-312 1-166 (166)
8 3md3_A Nuclear and cytoplasmic 100.0 1.8E-30 6.1E-35 239.4 20.8 164 41-208 1-165 (166)
9 1l3k_A Heterogeneous nuclear r 100.0 3.3E-30 1.1E-34 244.6 21.1 176 37-214 10-187 (196)
10 2qfj_A FBP-interacting repress 100.0 4.9E-30 1.7E-34 247.4 21.4 177 129-312 26-204 (216)
11 1b7f_A Protein (SXL-lethal pro 100.0 4.5E-30 1.5E-34 237.4 19.0 163 130-310 2-168 (168)
12 1fxl_A Paraneoplastic encephal 100.0 1.1E-29 3.8E-34 234.2 21.6 162 131-310 2-167 (167)
13 1ifw_A Polyadenylate-binding p 100.0 1.3E-31 4.4E-36 213.0 7.1 79 478-556 5-85 (92)
14 2qfj_A FBP-interacting repress 100.0 9.1E-30 3.1E-34 245.5 21.6 171 40-210 28-205 (216)
15 1l3k_A Heterogeneous nuclear r 100.0 7.7E-30 2.6E-34 242.1 20.5 175 129-317 11-187 (196)
16 2dyd_A Poly(A)-binding protein 100.0 3.7E-32 1.3E-36 212.8 3.2 77 478-554 7-83 (85)
17 1fxl_A Paraneoplastic encephal 100.0 2.1E-29 7.1E-34 232.4 22.3 162 40-207 2-167 (167)
18 1b7f_A Protein (SXL-lethal pro 100.0 1E-29 3.5E-34 235.0 20.2 163 39-207 2-168 (168)
19 3nmr_A Cugbp ELAV-like family 100.0 1.6E-29 5.5E-34 235.2 20.5 165 38-207 1-174 (175)
20 3nmr_A Cugbp ELAV-like family 100.0 1.3E-29 4.3E-34 235.9 19.6 165 130-311 2-175 (175)
21 1nmr_A Poly(A)-binding protein 100.0 5E-32 1.7E-36 212.1 2.6 77 477-553 7-83 (85)
22 1g9l_A Polyadenylate-binding p 100.0 1E-30 3.5E-35 225.4 10.3 81 477-557 50-130 (144)
23 3kuj_A Polyadenylate-binding p 100.0 7E-31 2.4E-35 207.7 7.7 80 478-557 5-84 (88)
24 2cjk_A Nuclear polyadenylated 100.0 1.2E-29 3.9E-34 234.6 15.2 162 131-313 3-166 (167)
25 2cjk_A Nuclear polyadenylated 100.0 2.2E-29 7.6E-34 232.6 14.7 163 39-210 2-166 (167)
26 1fje_B Nucleolin RBD12, protei 100.0 7.9E-29 2.7E-33 230.9 13.7 168 34-210 7-174 (175)
27 2g4b_A Splicing factor U2AF 65 100.0 3.9E-28 1.4E-32 225.3 18.3 158 39-208 3-172 (172)
28 3tyt_A Heterogeneous nuclear r 100.0 2.5E-28 8.6E-33 233.5 16.6 176 130-310 3-204 (205)
29 3tyt_A Heterogeneous nuclear r 100.0 4.3E-28 1.5E-32 231.9 17.5 157 39-200 3-193 (205)
30 2g4b_A Splicing factor U2AF 65 100.0 3.8E-28 1.3E-32 225.4 16.3 157 131-311 4-172 (172)
31 3pgw_A U1-A; protein-RNA compl 100.0 9E-28 3.1E-32 241.6 20.2 178 129-312 7-282 (282)
32 1fje_B Nucleolin RBD12, protei 100.0 8.9E-29 3.1E-33 230.6 11.8 164 129-313 11-174 (175)
33 2yh0_A Splicing factor U2AF 65 100.0 1.6E-27 5.4E-32 226.5 17.8 166 39-210 3-194 (198)
34 3pgw_A U1-A; protein-RNA compl 99.9 7.5E-27 2.6E-31 234.8 21.0 165 38-208 7-281 (282)
35 3sde_A Paraspeckle component 1 99.9 5.7E-27 2E-31 233.1 19.5 158 36-210 18-179 (261)
36 1i2t_A HYD protein; four alpha 99.9 1.9E-28 6.3E-33 180.3 5.5 60 493-552 1-60 (61)
37 2yh0_A Splicing factor U2AF 65 99.9 1.6E-27 5.6E-32 226.4 13.3 178 130-313 3-194 (198)
38 2adc_A Polypyrimidine tract-bi 99.9 4.6E-27 1.6E-31 229.1 16.2 176 129-312 32-227 (229)
39 3sde_A Paraspeckle component 1 99.9 1.2E-26 4E-31 230.8 18.7 156 129-313 20-179 (261)
40 2adc_A Polypyrimidine tract-bi 99.9 1.5E-26 5E-31 225.6 18.2 169 33-209 27-227 (229)
41 1qm9_A Polypyrimidine tract-bi 99.9 4E-27 1.4E-31 224.1 10.8 174 131-312 3-196 (198)
42 1qm9_A Polypyrimidine tract-bi 99.9 1.4E-26 5E-31 220.2 14.2 163 39-209 2-196 (198)
43 4f25_A Polyadenylate-binding p 99.8 3.7E-21 1.3E-25 166.3 10.0 108 39-147 4-113 (115)
44 2kn4_A Immunoglobulin G-bindin 99.8 5.5E-21 1.9E-25 174.9 10.6 148 160-313 2-150 (158)
45 2kn4_A Immunoglobulin G-bindin 99.8 1.3E-20 4.4E-25 172.5 12.1 141 69-210 2-150 (158)
46 4f25_A Polyadenylate-binding p 99.8 1E-19 3.5E-24 157.2 10.2 109 131-250 5-113 (115)
47 2i2y_A Fusion protein consists 99.8 6.3E-20 2.2E-24 166.4 7.2 138 169-313 10-148 (150)
48 4fxv_A ELAV-like protein 1; RN 99.8 4.3E-19 1.5E-23 148.8 10.7 82 231-312 16-98 (99)
49 2i2y_A Fusion protein consists 99.8 1.1E-18 3.8E-23 158.2 10.3 114 1-119 20-148 (150)
50 3s8s_A Histone-lysine N-methyl 99.8 8.4E-18 2.9E-22 143.7 13.5 89 233-321 5-94 (110)
51 4fxv_A ELAV-like protein 1; RN 99.7 1.6E-17 5.5E-22 139.2 11.5 78 40-117 19-97 (99)
52 1rk8_A CG8781-PA, CG8781-PA pr 99.7 3E-17 1E-21 151.2 9.9 138 177-316 11-155 (165)
53 3s8s_A Histone-lysine N-methyl 99.7 8.6E-17 2.9E-21 137.4 11.6 85 39-123 5-90 (110)
54 2lxi_A RNA-binding protein 10; 99.7 1.2E-17 4.2E-22 137.7 6.0 79 235-313 2-83 (91)
55 2lkz_A RNA-binding protein 5; 99.7 1.9E-17 6.7E-22 137.3 7.0 80 233-312 8-94 (95)
56 3md1_A Nuclear and cytoplasmic 99.7 8.8E-17 3E-21 129.9 10.3 80 234-313 1-81 (83)
57 2wbr_A GW182, gawky, LD47780P; 99.7 9.1E-17 3.1E-21 128.7 10.0 77 233-314 6-82 (89)
58 3bs9_A Nucleolysin TIA-1 isofo 99.7 1E-16 3.5E-21 130.8 10.7 81 233-313 5-86 (87)
59 3lqv_A PRE-mRNA branch site pr 99.7 8E-17 2.7E-21 138.9 10.1 103 39-157 7-109 (115)
60 3p5t_L Cleavage and polyadenyl 99.7 3.4E-17 1.1E-21 134.8 6.6 79 235-313 2-83 (90)
61 1sjq_A Polypyrimidine tract-bi 99.7 1.1E-16 3.6E-21 134.4 9.6 78 231-313 13-92 (105)
62 2lxi_A RNA-binding protein 10; 99.7 2.8E-17 9.5E-22 135.5 5.9 81 40-120 1-84 (91)
63 2ywk_A Putative RNA-binding pr 99.7 1.7E-16 5.8E-21 131.8 10.4 81 232-312 14-94 (95)
64 2do4_A Squamous cell carcinoma 99.7 1.3E-16 4.4E-21 133.9 9.7 83 231-313 14-96 (100)
65 1s79_A Lupus LA protein; RRM, 99.7 1.4E-16 4.8E-21 134.3 9.9 82 233-315 10-91 (103)
66 3ns6_A Eukaryotic translation 99.7 4.7E-17 1.6E-21 136.7 6.9 83 233-315 5-95 (100)
67 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.6E-16 5.5E-21 129.0 9.6 80 232-311 5-85 (85)
68 2lea_A Serine/arginine-rich sp 99.7 3.4E-17 1.2E-21 145.4 6.0 121 174-313 6-127 (135)
69 2x1f_A MRNA 3'-END-processing 99.7 1.8E-16 6.2E-21 132.0 10.1 82 234-315 2-84 (96)
70 1whw_A Hypothetical protein ri 99.7 1.7E-16 5.8E-21 132.9 9.9 82 232-313 6-88 (99)
71 3n9u_C Cleavage and polyadenyl 99.7 2.8E-16 9.6E-21 142.9 11.8 85 233-317 54-141 (156)
72 2dnz_A Probable RNA-binding pr 99.7 2.4E-16 8.1E-21 130.9 10.1 81 233-313 4-85 (95)
73 2d9p_A Polyadenylate-binding p 99.7 1.4E-16 4.9E-21 134.4 8.9 84 229-313 10-93 (103)
74 2cpy_A RNA-binding protein 12; 99.7 1.5E-16 5E-21 137.1 8.9 87 232-319 13-100 (114)
75 2fy1_A RNA-binding motif prote 99.7 1.9E-16 6.5E-21 136.7 9.5 82 232-313 5-86 (116)
76 2dnh_A Bruno-like 5, RNA bindi 99.7 2.2E-16 7.6E-21 133.7 9.7 82 232-313 13-97 (105)
77 1rk8_A CG8781-PA, CG8781-PA pr 99.7 3.2E-16 1.1E-20 144.2 11.4 121 1-121 13-154 (165)
78 3ulh_A THO complex subunit 4; 99.7 3.4E-16 1.2E-20 133.0 10.6 81 231-311 26-106 (107)
79 2cpz_A CUG triplet repeat RNA- 99.7 2.3E-16 8E-21 136.0 9.6 82 232-313 23-105 (115)
80 2cqc_A Arginine/serine-rich sp 99.7 3.5E-16 1.2E-20 129.8 10.3 82 231-312 12-94 (95)
81 2lkz_A RNA-binding protein 5; 99.7 1.4E-16 4.8E-21 132.1 7.8 82 37-118 6-94 (95)
82 3r27_A HnRNP L, heterogeneous 99.7 1.9E-16 6.3E-21 131.6 8.5 79 230-313 17-97 (100)
83 2cq0_A Eukaryotic translation 99.7 2.4E-16 8.4E-21 133.0 9.3 83 231-313 12-95 (103)
84 2cq3_A RNA-binding protein 9; 99.7 5.3E-16 1.8E-20 130.9 11.2 82 231-313 12-93 (103)
85 3bs9_A Nucleolysin TIA-1 isofo 99.7 5.8E-16 2E-20 126.3 11.1 81 39-119 5-86 (87)
86 2e5h_A Zinc finger CCHC-type a 99.7 3.8E-16 1.3E-20 129.4 10.1 80 232-311 14-94 (94)
87 1x5t_A Splicing factor 3B subu 99.7 1.9E-16 6.5E-21 131.8 8.2 81 233-313 4-86 (96)
88 2dgo_A Cytotoxic granule-assoc 99.7 4.2E-16 1.4E-20 134.3 10.6 83 231-313 12-95 (115)
89 2dnh_A Bruno-like 5, RNA bindi 99.7 7.1E-16 2.4E-20 130.6 11.8 87 36-122 11-100 (105)
90 2dgx_A KIAA0430 protein; RRM d 99.7 3.7E-16 1.3E-20 130.1 9.9 79 233-313 8-90 (96)
91 2dhg_A TRNA selenocysteine ass 99.7 2.4E-16 8.2E-21 133.3 8.8 83 231-313 6-90 (104)
92 1p27_B RNA-binding protein 8A; 99.7 3.9E-16 1.3E-20 132.4 10.2 83 231-313 20-103 (106)
93 1x5u_A Splicing factor 3B subu 99.6 2.9E-16 1E-20 133.0 9.3 83 231-313 12-95 (105)
94 1oo0_B CG8781-PA, drosophila Y 99.6 2.4E-16 8.2E-21 134.7 8.8 83 231-313 23-106 (110)
95 3md1_A Nuclear and cytoplasmic 99.6 6.4E-16 2.2E-20 124.8 10.8 80 40-119 1-81 (83)
96 2dgs_A DAZ-associated protein 99.6 4.3E-16 1.5E-20 130.4 9.9 82 231-313 7-89 (99)
97 2la6_A RNA-binding protein FUS 99.6 3.7E-16 1.3E-20 130.9 9.4 81 231-311 10-99 (99)
98 2do0_A HnRNP M, heterogeneous 99.6 5E-16 1.7E-20 133.6 10.5 81 232-312 13-93 (114)
99 2do4_A Squamous cell carcinoma 99.6 1.1E-15 3.6E-20 128.3 12.1 83 38-120 15-97 (100)
100 2cq0_A Eukaryotic translation 99.6 5.1E-16 1.8E-20 131.0 10.0 90 32-121 7-97 (103)
101 3p5t_L Cleavage and polyadenyl 99.6 2.4E-16 8.2E-21 129.6 7.7 81 41-121 2-85 (90)
102 2cqi_A Nucleolysin TIAR; RNA r 99.6 7.4E-16 2.5E-20 130.0 10.9 82 231-313 12-93 (103)
103 2d9p_A Polyadenylate-binding p 99.6 7.3E-16 2.5E-20 130.1 10.8 88 34-122 9-96 (103)
104 2db1_A Heterogeneous nuclear r 99.6 3.8E-16 1.3E-20 135.3 9.2 84 232-316 15-101 (118)
105 2cph_A RNA binding motif prote 99.6 4.4E-16 1.5E-20 132.3 9.5 83 231-313 12-97 (107)
106 2dnz_A Probable RNA-binding pr 99.6 7.3E-16 2.5E-20 127.9 10.5 84 38-121 3-87 (95)
107 2x1f_A MRNA 3'-END-processing 99.6 8.9E-16 3E-20 127.8 11.0 84 40-123 2-86 (96)
108 2jrs_A RNA-binding protein 39; 99.6 6.9E-16 2.3E-20 131.4 10.4 84 36-119 22-106 (108)
109 2khc_A Testis-specific RNP-typ 99.6 4E-16 1.4E-20 135.1 9.1 81 231-311 37-118 (118)
110 3q2s_C Cleavage and polyadenyl 99.6 2.7E-16 9.4E-21 152.4 8.9 85 233-317 67-154 (229)
111 2cqb_A Peptidyl-prolyl CIS-tra 99.6 2.9E-16 9.9E-21 132.2 7.9 82 232-313 10-92 (102)
112 1x5s_A Cold-inducible RNA-bind 99.6 3.8E-16 1.3E-20 131.5 8.6 82 232-313 10-92 (102)
113 2cpf_A RNA binding motif prote 99.6 4E-16 1.4E-20 130.4 8.6 81 233-313 4-88 (98)
114 1p1t_A Cleavage stimulation fa 99.6 2.7E-16 9.4E-21 132.9 7.7 85 234-318 8-93 (104)
115 1whw_A Hypothetical protein ri 99.6 8E-16 2.7E-20 128.8 10.5 85 38-122 6-91 (99)
116 2err_A Ataxin-2-binding protei 99.6 4.2E-16 1.4E-20 133.0 8.7 83 230-313 25-107 (109)
117 3ucg_A Polyadenylate-binding p 99.6 6.6E-16 2.3E-20 126.5 9.6 78 234-312 6-84 (89)
118 2hgl_A HNRPF protein, heteroge 99.6 2.8E-16 9.7E-21 139.1 7.8 84 232-316 42-128 (136)
119 2jrs_A RNA-binding protein 39; 99.6 4.9E-16 1.7E-20 132.4 9.0 83 231-313 23-106 (108)
120 2dnm_A SRP46 splicing factor; 99.6 3.5E-16 1.2E-20 132.0 8.0 82 232-313 11-93 (103)
121 2la6_A RNA-binding protein FUS 99.6 1.5E-15 5.1E-20 127.1 11.8 83 34-116 7-98 (99)
122 2dgv_A HnRNP M, heterogeneous 99.6 6.1E-16 2.1E-20 127.6 9.1 81 232-313 6-86 (92)
123 2dnn_A RNA-binding protein 12; 99.6 8.6E-16 2.9E-20 130.7 10.2 80 234-315 16-95 (109)
124 1p27_B RNA-binding protein 8A; 99.6 1.3E-15 4.4E-20 129.2 11.3 84 36-119 19-103 (106)
125 2cq4_A RNA binding motif prote 99.6 6.5E-16 2.2E-20 132.9 9.5 83 233-316 24-107 (114)
126 2cpz_A CUG triplet repeat RNA- 99.6 1.2E-15 4.1E-20 131.5 11.2 85 37-121 22-107 (115)
127 2hvz_A Splicing factor, argini 99.6 3.2E-16 1.1E-20 131.8 7.3 96 41-140 1-100 (101)
128 2ywk_A Putative RNA-binding pr 99.6 1.1E-15 3.9E-20 126.7 10.5 80 38-117 14-93 (95)
129 3mdf_A Peptidyl-prolyl CIS-tra 99.6 9.3E-16 3.2E-20 124.5 9.8 79 38-116 5-84 (85)
130 2kt5_A RNA and export factor-b 99.6 7.6E-16 2.6E-20 134.6 9.9 82 231-312 32-113 (124)
131 2cpe_A RNA-binding protein EWS 99.6 6E-16 2.1E-20 132.9 9.1 83 231-313 12-103 (113)
132 1x4h_A RNA-binding protein 28; 99.6 7.7E-16 2.6E-20 131.7 9.7 83 231-313 12-101 (111)
133 1x5t_A Splicing factor 3B subu 99.6 6.4E-16 2.2E-20 128.5 8.9 84 38-121 3-88 (96)
134 2cqc_A Arginine/serine-rich sp 99.6 1.9E-15 6.5E-20 125.4 11.8 82 36-117 11-93 (95)
135 3pgw_S U1-70K; protein-RNA com 99.6 7.2E-17 2.4E-21 171.0 3.8 82 232-313 100-182 (437)
136 2kxn_B Transformer-2 protein h 99.6 6E-16 2.1E-20 136.1 9.1 83 231-313 43-126 (129)
137 2dgp_A Bruno-like 4, RNA bindi 99.6 6.3E-16 2.2E-20 131.1 8.8 83 231-313 10-96 (106)
138 2div_A TRNA selenocysteine ass 99.6 7.5E-16 2.6E-20 128.9 9.2 81 232-312 7-93 (99)
139 1x5u_A Splicing factor 3B subu 99.6 1.2E-15 4E-20 129.2 10.4 87 35-121 10-97 (105)
140 1x4d_A Matrin 3; structural ge 99.6 3.2E-16 1.1E-20 131.4 6.8 77 232-313 13-92 (102)
141 4a8x_A RNA-binding protein wit 99.6 2.9E-16 9.8E-21 128.4 6.3 81 233-313 3-85 (88)
142 2dgo_A Cytotoxic granule-assoc 99.6 2.2E-15 7.6E-20 129.8 12.1 87 36-122 11-98 (115)
143 2fy1_A RNA-binding motif prote 99.6 1.2E-15 4.1E-20 131.7 10.3 84 38-121 5-88 (116)
144 1wi8_A EIF-4B, eukaryotic tran 99.6 8.8E-16 3E-20 129.8 9.3 81 231-313 12-94 (104)
145 1x4e_A RNA binding motif, sing 99.6 4.2E-16 1.4E-20 126.6 7.0 79 233-311 4-83 (85)
146 3ns6_A Eukaryotic translation 99.6 4.9E-16 1.7E-20 130.4 7.5 82 40-121 6-95 (100)
147 2e5h_A Zinc finger CCHC-type a 99.6 2.1E-15 7E-20 124.9 11.2 81 36-116 12-93 (94)
148 2cq3_A RNA-binding protein 9; 99.6 2.5E-15 8.6E-20 126.7 11.9 86 35-121 10-95 (103)
149 1s79_A Lupus LA protein; RRM, 99.6 9.1E-16 3.1E-20 129.3 9.1 81 39-120 10-90 (103)
150 1x5s_A Cold-inducible RNA-bind 99.6 1.1E-15 3.8E-20 128.6 9.7 85 37-121 9-94 (102)
151 2cq1_A PTB-like protein L; RRM 99.6 1.2E-15 4.2E-20 127.9 9.7 78 231-313 12-91 (101)
152 2krb_A Eukaryotic translation 99.6 4.5E-16 1.5E-20 125.2 6.8 73 235-308 2-81 (81)
153 2dgw_A Probable RNA-binding pr 99.6 9.5E-16 3.3E-20 126.2 8.9 80 232-313 8-87 (91)
154 2dnm_A SRP46 splicing factor; 99.6 1E-15 3.6E-20 129.1 9.4 85 36-120 9-94 (103)
155 2mss_A Protein (musashi1); RNA 99.6 4.7E-16 1.6E-20 123.1 6.8 74 236-310 1-75 (75)
156 2j76_E EIF-4B, EIF4B, eukaryot 99.6 3.7E-16 1.3E-20 131.2 6.5 80 232-313 17-98 (100)
157 3lqv_A PRE-mRNA branch site pr 99.6 9.4E-16 3.2E-20 132.1 9.2 103 130-260 7-109 (115)
158 3ulh_A THO complex subunit 4; 99.6 2.6E-15 8.8E-20 127.6 11.6 81 37-117 26-106 (107)
159 2dgs_A DAZ-associated protein 99.6 2E-15 6.8E-20 126.4 10.8 83 38-121 8-91 (99)
160 2wbr_A GW182, gawky, LD47780P; 99.6 1.3E-15 4.5E-20 122.0 9.0 73 39-116 6-78 (89)
161 1x4a_A Splicing factor, argini 99.6 1.9E-15 6.4E-20 128.9 10.6 81 231-313 19-99 (109)
162 2lmi_A GRSF-1, G-rich sequence 99.6 4.3E-16 1.5E-20 132.5 6.6 85 231-316 8-95 (107)
163 2do0_A HnRNP M, heterogeneous 99.6 3E-15 1E-19 128.7 12.0 82 38-119 13-94 (114)
164 2dng_A Eukaryotic translation 99.6 1.3E-15 4.6E-20 128.4 9.5 81 231-313 12-93 (103)
165 2ad9_A Polypyrimidine tract-bi 99.6 9.1E-16 3.1E-20 132.0 8.5 78 231-313 28-107 (119)
166 2cqi_A Nucleolysin TIAR; RNA r 99.6 3.3E-15 1.1E-19 126.0 11.9 85 36-121 11-95 (103)
167 3s7r_A Heterogeneous nuclear r 99.6 1.5E-15 5.2E-20 123.8 9.4 79 231-310 8-87 (87)
168 3ex7_B RNA-binding protein 8A; 99.6 1.2E-15 4.2E-20 133.7 9.5 83 231-313 19-102 (126)
169 2a3j_A U1 small nuclear ribonu 99.6 1.1E-15 3.7E-20 133.8 9.0 85 231-317 26-114 (127)
170 2err_A Ataxin-2-binding protei 99.6 1.3E-15 4.4E-20 130.0 9.3 90 29-119 18-107 (109)
171 1x4h_A RNA-binding protein 28; 99.6 2.5E-15 8.7E-20 128.5 11.2 86 36-121 11-103 (111)
172 2cpi_A CCR4-NOT transcription 99.6 8.8E-16 3E-20 131.5 8.3 83 231-313 12-101 (111)
173 1oo0_B CG8781-PA, drosophila Y 99.6 2.1E-15 7.1E-20 128.9 10.6 85 36-120 22-107 (110)
174 2cph_A RNA binding motif prote 99.6 2.5E-15 8.5E-20 127.6 11.0 86 36-121 11-99 (107)
175 2dhg_A TRNA selenocysteine ass 99.6 2E-15 6.9E-20 127.5 10.3 84 38-121 7-92 (104)
176 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1.4E-15 4.9E-20 128.0 9.3 85 37-121 9-94 (102)
177 2ek1_A RNA-binding protein 12; 99.6 7.3E-16 2.5E-20 127.9 7.3 80 233-312 14-94 (95)
178 2cqd_A RNA-binding region cont 99.6 1.5E-15 5.1E-20 131.1 9.5 82 231-313 14-96 (116)
179 2jwn_A Embryonic polyadenylate 99.6 8.4E-16 2.9E-20 134.3 7.9 78 234-312 36-114 (124)
180 2kxn_B Transformer-2 protein h 99.6 2E-15 6.8E-20 132.8 10.3 84 36-119 42-126 (129)
181 1u6f_A Tcubp1, RNA-binding pro 99.6 1.1E-15 3.7E-20 136.4 8.7 83 231-313 39-122 (139)
182 2m2b_A RNA-binding protein 10; 99.6 3.8E-16 1.3E-20 138.0 5.7 82 231-313 20-108 (131)
183 1wg5_A Heterogeneous nuclear r 99.6 9.3E-16 3.2E-20 129.7 7.8 81 232-313 13-94 (104)
184 3r27_A HnRNP L, heterogeneous 99.6 2.4E-15 8.3E-20 124.9 10.1 79 36-119 17-97 (100)
185 1x5o_A RNA binding motif, sing 99.6 1.5E-15 5E-20 130.7 9.1 81 232-312 23-111 (114)
186 3n9u_C Cleavage and polyadenyl 99.6 2.7E-15 9.2E-20 136.4 11.2 83 39-121 54-139 (156)
187 2cpf_A RNA binding motif prote 99.6 1.9E-15 6.4E-20 126.3 9.4 84 38-121 3-90 (98)
188 2dgv_A HnRNP M, heterogeneous 99.6 3.2E-15 1.1E-19 123.3 10.6 82 38-120 6-87 (92)
189 1sjq_A Polypyrimidine tract-bi 99.6 2E-15 6.8E-20 126.7 9.4 79 38-121 14-94 (105)
190 2dha_A FLJ20171 protein; RRM d 99.6 8.1E-16 2.8E-20 133.7 7.2 85 233-318 22-110 (123)
191 3s7r_A Heterogeneous nuclear r 99.6 3.3E-15 1.1E-19 121.8 10.5 80 35-115 6-86 (87)
192 2dgp_A Bruno-like 4, RNA bindi 99.6 2.5E-15 8.6E-20 127.4 10.0 87 35-121 8-98 (106)
193 2nlw_A Eukaryotic translation 99.6 1E-15 3.6E-20 129.6 7.6 79 233-312 14-99 (105)
194 2cqp_A RNA-binding protein 12; 99.6 7.8E-16 2.7E-20 128.6 6.7 81 232-312 13-94 (98)
195 2lea_A Serine/arginine-rich sp 99.6 7.7E-16 2.6E-20 136.6 7.1 113 5-120 15-128 (135)
196 4a8x_A RNA-binding protein wit 99.6 1.6E-15 5.4E-20 123.9 8.4 80 40-119 4-85 (88)
197 2div_A TRNA selenocysteine ass 99.6 2.8E-15 9.4E-20 125.5 10.0 82 37-118 6-93 (99)
198 2ki2_A SS-DNA binding protein 99.6 5.1E-16 1.8E-20 127.5 5.4 79 235-314 2-81 (90)
199 2dh8_A DAZ-associated protein 99.6 1.2E-15 4.3E-20 129.1 7.9 82 231-313 13-95 (105)
200 2jvr_A Nucleolar protein 3; RN 99.6 1.8E-15 6.2E-20 129.0 8.8 78 233-313 27-105 (111)
201 1wez_A HnRNP H', FTP-3, hetero 99.6 9.9E-16 3.4E-20 129.0 7.1 80 231-312 12-91 (102)
202 1uaw_A Mouse-musashi-1; RNP-ty 99.6 7.8E-16 2.7E-20 122.4 6.0 75 235-310 1-76 (77)
203 2rs2_A Musashi-1, RNA-binding 99.6 2.2E-15 7.7E-20 128.5 9.0 81 232-313 23-104 (109)
204 1p1t_A Cleavage stimulation fa 99.6 2.5E-15 8.7E-20 126.9 9.2 86 39-124 7-93 (104)
205 1wex_A Hypothetical protein (r 99.6 1.7E-15 5.7E-20 127.8 8.0 77 232-313 13-91 (104)
206 1u6f_A Tcubp1, RNA-binding pro 99.6 3.6E-15 1.2E-19 133.0 10.4 86 37-122 39-125 (139)
207 1x4e_A RNA binding motif, sing 99.6 9.6E-16 3.3E-20 124.4 6.1 79 38-116 3-82 (85)
208 2la4_A Nuclear and cytoplasmic 99.6 3.8E-15 1.3E-19 125.1 9.9 76 232-312 25-100 (101)
209 2dgw_A Probable RNA-binding pr 99.6 6.1E-15 2.1E-19 121.3 10.9 81 37-119 7-87 (91)
210 1wi8_A EIF-4B, eukaryotic tran 99.6 3.7E-15 1.3E-19 125.9 9.8 86 34-121 9-96 (104)
211 2khc_A Testis-specific RNP-typ 99.6 2.8E-15 9.5E-20 129.8 9.2 81 36-116 36-117 (118)
212 2kt5_A RNA and export factor-b 99.6 7.1E-15 2.4E-19 128.4 11.8 82 38-119 33-114 (124)
213 3ucg_A Polyadenylate-binding p 99.6 4.5E-15 1.5E-19 121.5 9.8 78 40-118 6-84 (89)
214 2fc9_A NCL protein; structure 99.6 2.5E-15 8.6E-20 126.2 8.4 80 231-313 12-91 (101)
215 2mss_A Protein (musashi1); RNA 99.6 2E-15 6.8E-20 119.5 7.3 73 42-115 1-74 (75)
216 2cpy_A RNA-binding protein 12; 99.6 2.7E-15 9.3E-20 129.1 8.7 85 37-122 12-97 (114)
217 2dng_A Eukaryotic translation 99.6 6.2E-15 2.1E-19 124.3 10.8 84 36-121 11-95 (103)
218 2cpe_A RNA-binding protein EWS 99.6 4E-15 1.4E-19 127.7 9.7 86 36-121 11-105 (113)
219 2dis_A Unnamed protein product 99.6 2.8E-15 9.6E-20 127.8 8.6 81 233-313 7-92 (109)
220 2dgx_A KIAA0430 protein; RRM d 99.6 5.9E-15 2E-19 122.8 10.3 80 38-119 7-90 (96)
221 2krb_A Eukaryotic translation 99.6 1.7E-15 6E-20 121.8 6.7 72 41-113 2-80 (81)
222 2dnq_A RNA-binding protein 4B; 99.6 5.8E-15 2E-19 121.2 10.0 75 232-313 6-80 (90)
223 2ytc_A PRE-mRNA-splicing facto 99.6 4.7E-15 1.6E-19 120.3 9.3 76 231-311 9-85 (85)
224 1x4b_A Heterogeneous nuclear r 99.6 3.1E-15 1E-19 129.1 8.7 80 233-313 26-106 (116)
225 2cqd_A RNA-binding region cont 99.6 6.6E-15 2.3E-19 127.0 10.8 83 36-119 13-96 (116)
226 2cqg_A TDP-43, TAR DNA-binding 99.6 6.2E-15 2.1E-19 124.3 10.2 81 231-313 12-93 (103)
227 1h2v_Z 20 kDa nuclear CAP bind 99.6 5.4E-15 1.8E-19 134.6 10.6 81 232-312 37-118 (156)
228 1x4g_A Nucleolysin TIAR; struc 99.6 5.7E-15 1.9E-19 125.9 10.0 78 231-313 22-99 (109)
229 1x4f_A Matrin 3; structural ge 99.6 1.1E-15 3.8E-20 130.0 5.5 78 231-313 22-102 (112)
230 1why_A Hypothetical protein ri 99.6 4.4E-15 1.5E-19 123.8 9.1 77 232-313 15-93 (97)
231 1nu4_A U1A RNA binding domain; 99.6 1.5E-15 5.1E-20 126.6 6.2 83 232-316 6-92 (97)
232 2jvo_A Nucleolar protein 3; nu 99.6 4.1E-15 1.4E-19 126.6 9.0 79 230-315 27-105 (108)
233 2ek1_A RNA-binding protein 12; 99.6 2.3E-15 7.8E-20 124.9 7.2 80 38-117 13-93 (95)
234 2dh8_A DAZ-associated protein 99.6 5E-15 1.7E-19 125.3 9.4 84 37-121 13-97 (105)
235 1wel_A RNA-binding protein 12; 99.6 1.4E-15 4.7E-20 133.0 6.1 84 232-316 23-107 (124)
236 2db1_A Heterogeneous nuclear r 99.6 4.8E-15 1.6E-19 128.3 9.4 82 38-120 15-99 (118)
237 2rs2_A Musashi-1, RNA-binding 99.6 4.4E-15 1.5E-19 126.6 9.0 84 36-120 21-105 (109)
238 1x4c_A Splicing factor, argini 99.6 5.9E-15 2E-19 125.6 9.7 75 233-313 14-93 (108)
239 2cqp_A RNA-binding protein 12; 99.6 3.6E-15 1.2E-19 124.5 8.2 82 37-118 12-94 (98)
240 2nlw_A Eukaryotic translation 99.6 4E-15 1.4E-19 126.0 8.5 84 34-118 9-99 (105)
241 1wg5_A Heterogeneous nuclear r 99.6 5.7E-15 1.9E-19 124.8 9.4 82 37-119 12-94 (104)
242 2cpi_A CCR4-NOT transcription 99.6 4.8E-15 1.7E-19 126.8 9.0 88 33-120 8-102 (111)
243 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 6.4E-15 2.2E-19 131.4 10.0 79 232-310 61-140 (140)
244 2hgl_A HNRPF protein, heteroge 99.6 3.6E-15 1.2E-19 132.0 8.2 82 38-120 42-126 (136)
245 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.8E-15 6.1E-20 127.0 5.9 85 33-119 12-98 (100)
246 1x4a_A Splicing factor, argini 99.6 1.4E-14 4.9E-19 123.4 11.6 82 37-120 19-100 (109)
247 2hvz_A Splicing factor, argini 99.6 2.9E-15 9.9E-20 125.9 7.2 75 235-313 1-75 (101)
248 1wez_A HnRNP H', FTP-3, hetero 99.6 4.6E-15 1.6E-19 124.9 8.3 82 36-119 11-92 (102)
249 2cpj_A Non-POU domain-containi 99.6 3.9E-15 1.3E-19 124.6 7.9 77 232-313 13-89 (99)
250 1x4d_A Matrin 3; structural ge 99.6 5E-15 1.7E-19 124.1 8.4 80 36-120 11-93 (102)
251 1whx_A Hypothetical protein ri 99.6 5.3E-15 1.8E-19 126.6 8.7 75 233-312 9-83 (111)
252 3ex7_B RNA-binding protein 8A; 99.6 6.7E-15 2.3E-19 128.9 9.6 85 36-120 18-103 (126)
253 2hgm_A HNRPF protein, heteroge 99.6 3.2E-15 1.1E-19 130.2 7.4 82 232-315 40-123 (126)
254 2dnn_A RNA-binding protein 12; 99.6 4.9E-15 1.7E-19 126.0 8.4 80 39-120 15-94 (109)
255 2ad9_A Polypyrimidine tract-bi 99.6 1E-14 3.5E-19 125.4 10.4 80 36-120 27-108 (119)
256 2cq2_A Hypothetical protein LO 99.6 4.3E-15 1.5E-19 126.4 7.9 77 231-312 22-105 (114)
257 2m2b_A RNA-binding protein 10; 99.6 2.7E-15 9.3E-20 132.4 6.9 84 36-120 19-109 (131)
258 2xnq_A Nuclear polyadenylated 99.6 1.1E-14 3.8E-19 121.4 10.3 76 231-313 19-95 (97)
259 2cq4_A RNA binding motif prote 99.6 4.8E-15 1.6E-19 127.5 8.3 83 39-122 24-107 (114)
260 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.7E-14 5.7E-19 131.4 12.1 83 38-120 37-120 (156)
261 1uaw_A Mouse-musashi-1; RNP-ty 99.6 3.4E-15 1.2E-19 118.6 6.5 75 41-116 1-76 (77)
262 2cqg_A TDP-43, TAR DNA-binding 99.6 2.6E-14 8.9E-19 120.4 12.2 83 37-121 12-95 (103)
263 1iqt_A AUF1, heterogeneous nuc 99.6 2.4E-15 8.2E-20 118.9 5.4 74 236-310 1-75 (75)
264 1wf1_A RNA-binding protein RAL 99.6 9.8E-15 3.4E-19 124.7 9.2 94 19-119 5-100 (110)
265 2cq1_A PTB-like protein L; RRM 99.6 1.9E-14 6.5E-19 120.6 10.7 79 37-120 12-92 (101)
266 1x5o_A RNA binding motif, sing 99.6 2.1E-14 7.2E-19 123.4 11.3 80 38-117 23-110 (114)
267 2f3j_A RNA and export factor b 99.6 8.2E-15 2.8E-19 136.1 9.3 82 232-313 86-167 (177)
268 2xs2_A Deleted in azoospermia- 99.5 4E-15 1.4E-19 125.2 6.4 81 232-314 7-87 (102)
269 2dha_A FLJ20171 protein; RRM d 99.5 6.9E-15 2.4E-19 127.8 8.0 82 38-120 21-106 (123)
270 2dnq_A RNA-binding protein 4B; 99.5 2.1E-14 7.1E-19 117.9 10.4 77 38-121 6-82 (90)
271 2e5j_A Methenyltetrahydrofolat 99.5 8E-15 2.7E-19 122.2 8.0 78 232-313 17-94 (97)
272 2ki2_A SS-DNA binding protein 99.5 2.7E-15 9.2E-20 123.2 5.0 79 41-120 2-81 (90)
273 2hgn_A Heterogeneous nuclear r 99.5 1.8E-15 6E-20 134.4 4.2 79 233-313 45-123 (139)
274 2dgt_A RNA-binding protein 30; 99.5 1.5E-14 5.2E-19 119.2 9.5 76 231-313 7-82 (92)
275 2a3j_A U1 small nuclear ribonu 99.5 1.4E-14 4.7E-19 126.7 9.6 85 38-124 27-115 (127)
276 2dnp_A RNA-binding protein 14; 99.5 1.5E-14 5.2E-19 118.7 9.3 76 231-313 6-81 (90)
277 2dis_A Unnamed protein product 99.5 1.2E-14 4.2E-19 123.8 8.9 85 38-122 6-95 (109)
278 2hgn_A Heterogeneous nuclear r 99.5 1.9E-15 6.6E-20 134.2 3.9 124 81-211 1-124 (139)
279 2dgu_A Heterogeneous nuclear r 99.5 1.5E-14 5E-19 122.0 9.1 74 233-313 10-83 (103)
280 2ytc_A PRE-mRNA-splicing facto 99.5 3.1E-14 1.1E-18 115.4 10.6 75 37-116 9-84 (85)
281 1why_A Hypothetical protein ri 99.5 2E-14 6.9E-19 119.7 9.7 78 38-120 15-94 (97)
282 2cpj_A Non-POU domain-containi 99.5 1.8E-14 6.3E-19 120.5 9.4 80 36-120 11-90 (99)
283 1wex_A Hypothetical protein (r 99.5 1.8E-14 6E-19 121.5 9.3 79 38-121 13-93 (104)
284 2cpx_A Hypothetical protein FL 99.5 9.2E-15 3.1E-19 125.8 7.8 79 232-313 23-105 (115)
285 1x4b_A Heterogeneous nuclear r 99.5 1.2E-14 4.2E-19 125.3 8.6 82 39-121 26-108 (116)
286 2kvi_A Nuclear polyadenylated 99.5 1.4E-14 4.7E-19 120.5 8.5 75 232-313 8-83 (96)
287 1x4c_A Splicing factor, argini 99.5 2.6E-14 8.9E-19 121.6 10.3 77 38-120 13-94 (108)
288 2lmi_A GRSF-1, G-rich sequence 99.5 6.5E-15 2.2E-19 125.2 6.3 82 38-120 9-93 (107)
289 1fj7_A Nucleolin RBD1, protein 99.5 1.9E-15 6.5E-20 127.0 2.9 80 232-313 15-95 (101)
290 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 2.8E-14 9.6E-19 127.2 10.7 79 37-115 60-139 (140)
291 2lcw_A RNA-binding protein FUS 99.3 6.6E-16 2.3E-20 133.3 0.0 84 233-316 6-98 (116)
292 2j8a_A Histone-lysine N-methyl 99.5 1E-14 3.5E-19 124.7 7.3 79 235-313 3-96 (136)
293 2jvr_A Nucleolar protein 3; RN 99.5 1.5E-14 5.1E-19 123.3 8.3 77 39-118 27-104 (111)
294 2la4_A Nuclear and cytoplasmic 99.5 1.8E-14 6.1E-19 121.0 8.6 75 39-118 26-100 (101)
295 2fc8_A NCL protein; structure 99.5 3.3E-14 1.1E-18 119.5 10.3 88 31-121 6-94 (102)
296 2e5j_A Methenyltetrahydrofolat 99.5 2.7E-14 9.4E-19 118.9 9.7 80 36-119 15-94 (97)
297 1fjc_A Nucleolin RBD2, protein 99.5 6.1E-15 2.1E-19 122.6 5.6 77 233-313 15-91 (96)
298 1fj7_A Nucleolin RBD1, protein 99.5 3.5E-15 1.2E-19 125.3 4.2 84 36-121 13-97 (101)
299 1fjc_A Nucleolin RBD2, protein 99.5 9.1E-15 3.1E-19 121.5 6.6 82 35-120 11-92 (96)
300 2xnq_A Nuclear polyadenylated 99.5 4.2E-14 1.4E-18 117.8 10.7 77 35-118 17-94 (97)
301 2jwn_A Embryonic polyadenylate 99.5 2E-14 6.8E-19 125.5 9.1 79 39-118 35-114 (124)
302 1iqt_A AUF1, heterogeneous nuc 99.5 7.3E-15 2.5E-19 116.1 5.7 73 42-115 1-74 (75)
303 2xs2_A Deleted in azoospermia- 99.5 1.1E-14 3.7E-19 122.6 7.0 81 39-121 8-88 (102)
304 3d2w_A TAR DNA-binding protein 99.5 2.8E-14 9.4E-19 116.9 9.2 77 232-316 9-87 (89)
305 1wel_A RNA-binding protein 12; 99.5 1.2E-14 4.1E-19 127.0 7.5 83 38-121 23-106 (124)
306 2fc9_A NCL protein; structure 99.5 2.3E-14 8E-19 120.3 8.9 82 36-120 11-92 (101)
307 2fc8_A NCL protein; structure 99.5 2.1E-14 7.2E-19 120.7 8.6 80 231-313 12-92 (102)
308 1x4f_A Matrin 3; structural ge 99.5 1.4E-14 4.9E-19 123.1 7.4 79 37-120 22-103 (112)
309 2cpd_A Apobec-1 stimulating pr 99.5 4.1E-14 1.4E-18 118.3 10.2 75 232-313 13-89 (99)
310 1x4g_A Nucleolysin TIAR; struc 99.5 3.8E-14 1.3E-18 120.8 10.0 79 38-121 23-101 (109)
311 1sjr_A Polypyrimidine tract-bi 99.5 2.4E-14 8.3E-19 129.4 9.2 77 234-313 46-124 (164)
312 1nu4_A U1A RNA binding domain; 99.5 1.5E-14 5.1E-19 120.4 7.3 83 38-122 6-92 (97)
313 3q2s_C Cleavage and polyadenyl 99.5 1.8E-14 6.1E-19 139.6 8.9 82 39-120 67-151 (229)
314 1whx_A Hypothetical protein ri 99.5 1.8E-14 6.1E-19 123.2 7.8 76 38-118 8-83 (111)
315 2pe8_A Splicing factor 45; RRM 99.5 7.5E-14 2.6E-18 117.9 11.5 82 232-313 6-94 (105)
316 2cqh_A IGF-II mRNA-binding pro 99.5 1.4E-14 4.7E-19 119.7 6.6 75 233-313 7-83 (93)
317 2jvo_A Nucleolar protein 3; nu 99.5 4.4E-14 1.5E-18 120.1 9.9 77 37-120 28-104 (108)
318 3egn_A RNA-binding protein 40; 99.5 8.9E-15 3E-19 131.2 5.8 83 231-313 42-130 (143)
319 1wg1_A KIAA1579 protein, homol 99.5 2.1E-14 7E-19 117.4 7.3 74 233-312 4-77 (88)
320 1wf1_A RNA-binding protein RAL 99.5 3.1E-14 1E-18 121.6 8.6 73 233-312 26-99 (110)
321 2dgt_A RNA-binding protein 30; 99.5 6.5E-14 2.2E-18 115.4 10.3 79 36-121 6-84 (92)
322 3pgw_S U1-70K; protein-RNA com 99.5 1.2E-14 4.1E-19 153.9 7.3 91 29-119 91-182 (437)
323 2f3j_A RNA and export factor b 99.5 5.9E-14 2E-18 130.3 11.1 82 39-120 87-168 (177)
324 3zzy_A Polypyrimidine tract-bi 99.5 5.2E-14 1.8E-18 122.5 10.0 76 234-313 28-106 (130)
325 2dnp_A RNA-binding protein 14; 99.5 6.9E-14 2.4E-18 114.7 9.9 77 37-120 6-82 (90)
326 2dgu_A Heterogeneous nuclear r 99.5 5.3E-14 1.8E-18 118.6 9.3 78 38-122 9-86 (103)
327 2hgm_A HNRPF protein, heteroge 99.5 2.3E-14 7.7E-19 124.9 7.2 80 38-119 40-121 (126)
328 1x5p_A Negative elongation fac 99.5 7E-14 2.4E-18 116.4 9.8 75 232-313 13-87 (97)
329 2cqh_A IGF-II mRNA-binding pro 99.5 4.8E-14 1.7E-18 116.4 8.5 78 38-121 6-85 (93)
330 2kvi_A Nuclear polyadenylated 99.5 5.2E-14 1.8E-18 117.0 8.7 78 37-121 7-85 (96)
331 2cpx_A Hypothetical protein FL 99.5 6.3E-14 2.1E-18 120.6 9.1 81 38-121 23-107 (115)
332 3beg_B Splicing factor, argini 99.5 4.5E-14 1.5E-18 121.6 7.8 69 233-307 15-83 (115)
333 2e5i_A Heterogeneous nuclear r 99.5 1.1E-13 3.7E-18 120.0 10.1 74 235-313 26-102 (124)
334 2diu_A KIAA0430 protein; struc 99.5 7.2E-14 2.5E-18 112.9 8.3 70 235-313 10-84 (96)
335 2e5g_A U6 snRNA-specific termi 99.5 9.5E-14 3.3E-18 114.9 9.4 75 234-313 8-82 (94)
336 2cpd_A Apobec-1 stimulating pr 99.5 2.1E-13 7.1E-18 114.0 11.4 77 37-120 12-90 (99)
337 2e44_A Insulin-like growth fac 99.5 6.8E-14 2.3E-18 116.2 7.6 78 233-313 14-92 (96)
338 2hzc_A Splicing factor U2AF 65 99.5 1.5E-13 5E-18 111.9 9.4 70 233-308 5-85 (87)
339 2cq2_A Hypothetical protein LO 99.5 9.5E-14 3.3E-18 118.1 8.1 78 36-118 21-105 (114)
340 1wg1_A KIAA1579 protein, homol 99.5 1.2E-13 4E-18 112.9 8.4 74 39-118 4-77 (88)
341 2lcw_A RNA-binding protein FUS 99.2 4.8E-15 1.7E-19 127.9 0.0 85 38-122 5-98 (116)
342 2voo_A Lupus LA protein; RNA-b 99.5 1.7E-13 5.8E-18 129.1 10.4 78 234-312 109-186 (193)
343 2e5g_A U6 snRNA-specific termi 99.5 1.8E-13 6E-18 113.3 9.1 79 37-120 5-83 (94)
344 2voo_A Lupus LA protein; RNA-b 99.5 2.9E-13 9.9E-18 127.5 11.7 115 3-118 63-186 (193)
345 3beg_B Splicing factor, argini 99.5 1E-13 3.5E-18 119.3 7.8 74 38-117 14-92 (115)
346 1x5p_A Negative elongation fac 99.5 3.6E-13 1.2E-17 112.1 10.7 78 37-121 12-89 (97)
347 3egn_A RNA-binding protein 40; 99.4 8.2E-14 2.8E-18 124.8 6.8 84 38-121 43-132 (143)
348 1sjr_A Polypyrimidine tract-bi 99.4 2.6E-13 8.8E-18 122.7 10.0 79 38-119 44-124 (164)
349 2bz2_A Negative elongation fac 99.4 2.1E-13 7.2E-18 118.4 8.5 75 232-313 37-111 (121)
350 3d2w_A TAR DNA-binding protein 99.4 2.8E-13 9.5E-18 110.9 8.7 75 38-120 9-85 (89)
351 2e44_A Insulin-like growth fac 99.4 3.8E-13 1.3E-17 111.6 9.6 81 36-119 11-92 (96)
352 2hzc_A Splicing factor U2AF 65 99.4 2.5E-13 8.5E-18 110.5 8.2 71 39-115 5-86 (87)
353 3zzy_A Polypyrimidine tract-bi 99.4 4.1E-13 1.4E-17 116.9 9.8 76 40-119 28-106 (130)
354 2j8a_A Histone-lysine N-methyl 99.4 2.5E-13 8.5E-18 116.1 7.7 78 41-118 3-95 (136)
355 2dnl_A Cytoplasmic polyadenyla 99.4 3.3E-13 1.1E-17 115.9 8.1 76 38-116 6-85 (114)
356 3u1l_A PRE-mRNA-splicing facto 99.4 2.4E-13 8.2E-18 131.2 7.9 80 232-316 132-232 (240)
357 2dnl_A Cytoplasmic polyadenyla 99.4 2.8E-13 9.7E-18 116.3 7.3 76 233-311 7-86 (114)
358 2pe8_A Splicing factor 45; RRM 99.4 1.1E-12 3.7E-17 110.7 10.7 84 37-120 5-95 (105)
359 1wf0_A TDP-43, TAR DNA-binding 99.4 1.4E-13 4.9E-18 112.3 5.0 73 233-313 4-78 (88)
360 2diu_A KIAA0430 protein; struc 99.4 7.7E-13 2.6E-17 106.9 8.5 75 39-122 7-87 (96)
361 3v4m_A Splicing factor U2AF 65 99.4 8.5E-13 2.9E-17 111.4 8.6 82 233-314 4-98 (105)
362 1jmt_A Splicing factor U2AF 35 99.4 1.8E-13 6.2E-18 115.3 4.4 72 239-310 20-103 (104)
363 1wf0_A TDP-43, TAR DNA-binding 99.4 2.3E-13 8E-18 111.0 4.6 77 39-121 4-80 (88)
364 2e5i_A Heterogeneous nuclear r 99.4 1.9E-12 6.4E-17 112.2 10.1 75 40-119 25-102 (124)
365 2bz2_A Negative elongation fac 99.4 1.2E-12 4.1E-17 113.6 8.8 77 38-121 37-113 (121)
366 3ue2_A Poly(U)-binding-splicin 99.3 1.5E-12 5E-17 112.1 7.9 81 233-313 19-109 (118)
367 2dit_A HIV TAT specific factor 99.3 2.8E-12 9.6E-17 109.7 9.3 80 231-313 12-102 (112)
368 3u1l_A PRE-mRNA-splicing facto 99.3 4.7E-12 1.6E-16 122.1 9.4 101 15-120 107-230 (240)
369 2dit_A HIV TAT specific factor 99.3 1E-11 3.6E-16 106.1 10.5 82 36-120 11-103 (112)
370 1jmt_A Splicing factor U2AF 35 99.3 2E-12 6.8E-17 109.0 5.3 72 45-116 20-103 (104)
371 3v4m_A Splicing factor U2AF 65 99.3 9E-12 3.1E-16 105.1 8.8 82 39-120 4-98 (105)
372 3s6e_A RNA-binding protein 39; 99.2 5.2E-11 1.8E-15 101.7 9.6 79 233-314 6-94 (114)
373 3ue2_A Poly(U)-binding-splicin 99.2 4.4E-11 1.5E-15 102.9 8.9 83 38-120 18-110 (118)
374 3tht_A Alkylated DNA repair pr 99.2 2.6E-11 8.9E-16 123.2 8.6 76 231-311 15-97 (345)
375 2d9o_A DNAJ (HSP40) homolog, s 99.2 6.7E-11 2.3E-15 98.5 8.9 64 244-313 27-90 (100)
376 3tht_A Alkylated DNA repair pr 99.1 1.3E-10 4.3E-15 118.2 8.2 75 37-116 15-96 (345)
377 2d9o_A DNAJ (HSP40) homolog, s 99.1 5.2E-10 1.8E-14 93.1 9.6 65 50-120 27-91 (100)
378 3s6e_A RNA-binding protein 39; 99.0 8.4E-10 2.9E-14 94.2 9.9 80 39-121 6-95 (114)
379 1owx_A Lupus LA protein, SS-B, 99.0 1.3E-09 4.4E-14 93.2 9.0 83 230-317 14-100 (121)
380 2dnr_A Synaptojanin-1; RRM dom 98.9 2.4E-09 8.3E-14 85.7 7.4 73 232-312 5-85 (91)
381 3dxb_A Thioredoxin N-terminall 98.7 1.9E-08 6.6E-13 96.6 8.4 69 246-314 141-214 (222)
382 1ufw_A Synaptojanin 2; RNP dom 98.7 2.2E-08 7.7E-13 80.5 6.7 73 231-311 12-93 (95)
383 1owx_A Lupus LA protein, SS-B, 98.7 6E-08 2E-12 82.8 8.4 80 129-213 16-99 (121)
384 2dnr_A Synaptojanin-1; RRM dom 98.6 5.2E-08 1.8E-12 78.0 7.2 70 132-209 8-85 (91)
385 1ufw_A Synaptojanin 2; RNP dom 98.5 1.4E-07 4.8E-12 75.9 6.7 70 39-116 14-92 (95)
386 3dxb_A Thioredoxin N-terminall 98.5 7.5E-07 2.6E-11 85.3 12.3 69 52-120 141-214 (222)
387 2l9w_A U4/U6 snRNA-associated- 98.4 2.8E-06 9.5E-11 69.6 10.2 73 234-311 21-98 (117)
388 2l9w_A U4/U6 snRNA-associated- 98.1 1.6E-05 5.5E-10 65.1 9.1 74 39-117 20-98 (117)
389 1wey_A Calcipressin 1; structu 97.5 0.00014 4.8E-09 59.4 6.0 73 234-311 5-82 (104)
390 2dhx_A Poly (ADP-ribose) polym 97.4 0.00097 3.3E-08 54.2 10.0 89 38-144 6-99 (104)
391 1wey_A Calcipressin 1; structu 97.1 0.0011 3.7E-08 54.2 6.7 74 39-117 4-82 (104)
392 2dhx_A Poly (ADP-ribose) polym 97.0 0.0031 1.1E-07 51.2 8.5 70 232-309 6-80 (104)
393 1uw4_A UPF3X; nonsense mediate 96.8 0.0032 1.1E-07 50.5 7.4 68 41-108 2-72 (91)
394 1whv_A Poly(A)-specific ribonu 96.8 0.005 1.7E-07 49.4 8.4 55 40-102 16-70 (100)
395 1wwh_A Nucleoporin 35, nucleop 96.5 0.0083 2.9E-07 50.4 7.9 75 232-313 22-97 (119)
396 1whv_A Poly(A)-specific ribonu 96.4 0.0076 2.6E-07 48.4 6.7 55 132-193 16-70 (100)
397 1uw4_A UPF3X; nonsense mediate 96.4 0.016 5.6E-07 46.4 8.6 67 235-301 2-71 (91)
398 3p3d_A Nucleoporin 53; structu 96.1 0.007 2.4E-07 51.5 5.4 79 39-119 6-99 (132)
399 1wwh_A Nucleoporin 35, nucleop 96.1 0.022 7.7E-07 47.7 8.3 75 129-210 22-97 (119)
400 3ctr_A Poly(A)-specific ribonu 95.7 0.014 4.7E-07 47.0 5.1 53 236-296 8-60 (101)
401 3ctr_A Poly(A)-specific ribonu 95.6 0.017 5.9E-07 46.5 5.5 54 133-193 7-60 (101)
402 3p3d_A Nucleoporin 53; structu 95.1 0.02 6.8E-07 48.8 4.5 77 235-313 8-99 (132)
403 2l08_A Regulator of nonsense t 95.0 0.016 5.4E-07 46.8 3.4 69 40-108 9-80 (97)
404 3pq1_A Poly(A) RNA polymerase; 94.6 0.017 5.6E-07 60.6 3.5 57 39-100 52-108 (464)
405 2l08_A Regulator of nonsense t 92.6 0.15 5.1E-06 41.1 4.9 68 234-301 9-79 (97)
406 3pq1_A Poly(A) RNA polymerase; 92.6 0.071 2.4E-06 55.8 3.9 56 130-190 52-107 (464)
407 3d45_A Poly(A)-specific ribonu 81.9 3.5 0.00012 43.8 8.5 66 28-103 430-495 (507)
408 3d45_A Poly(A)-specific ribonu 74.1 7 0.00024 41.4 8.0 53 236-296 442-494 (507)
409 2g0c_A ATP-dependent RNA helic 45.7 17 0.0006 27.1 3.5 60 244-311 11-75 (76)
410 3lpe_A Putative transcription 36.3 1.4E+02 0.0049 23.1 7.7 34 66-103 39-72 (92)
411 3j21_T 50S ribosomal protein L 35.2 92 0.0031 24.1 6.1 56 43-100 25-82 (86)
412 4eyt_A Telomerase associated p 27.9 2.1E+02 0.0071 22.1 8.0 55 40-101 12-66 (129)
413 4e8u_A Putative uncharacterize 27.2 93 0.0032 27.5 5.5 51 42-94 14-75 (172)
414 3j21_T 50S ribosomal protein L 24.5 1.5E+02 0.0051 22.9 5.6 57 133-191 24-82 (86)
415 2wx3_A MRNA-decapping enzyme 1 24.5 36 0.0012 23.4 1.8 22 526-547 18-39 (51)
416 4e8u_A Putative uncharacterize 24.3 95 0.0032 27.4 5.0 51 235-287 13-74 (172)
417 4eyt_A Telomerase associated p 22.3 2.7E+02 0.0093 21.4 8.1 56 233-295 11-66 (129)
418 2gle_A Neurabin-1; SAM domain, 21.0 90 0.0031 22.9 3.7 43 513-555 30-73 (74)
419 3lcn_C MRNA transport factor G 20.2 1.2E+02 0.0041 17.9 3.1 19 536-554 9-27 (29)
420 2gu3_A YPMB protein; APC1927, 20.0 1.2E+02 0.0043 25.5 4.8 47 45-91 68-128 (136)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2.7e-44 Score=362.87 Aligned_cols=256 Identities=23% Similarity=0.338 Sum_probs=233.4
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~ 118 (575)
.+++|||+|||.++|+++|+++|+.|| |.+|++ +.++|||||+|.+.++|.+|++.+|+..+.|+.+.|.+..
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~- 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP- 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC-
Confidence 467899999999999999999999999 999988 4589999999999999999999999999999999998742
Q ss_pred hhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCee
Q 008162 119 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKF 197 (575)
Q Consensus 119 ~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~ 197 (575)
..++|||+|||.++++++|+++|+.||.|.++.++.+ .+|+++|||||+|.+.++|.+|++.+++..+
T Consensus 94 -----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~ 162 (284)
T 3smz_A 94 -----------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL 162 (284)
T ss_dssp -----------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred -----------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3468999999999999999999999999999999988 5899999999999999999999999999999
Q ss_pred CCeeEEEcccccchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCC-CHHHHHHHhhhcCCeeEEEEeeCCCCCCCc
Q 008162 198 DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI-DDEKLKELFSEFGTITSCKVMRDPSGISKG 276 (575)
Q Consensus 198 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~-t~~~l~~~F~~~G~v~~~~i~~~~~g~skg 276 (575)
.|+.|.|.++..+... ......++|||+|||..+ |+++|+++|+.||.|.+++|+.+.+|.++|
T Consensus 163 ~g~~i~v~~a~~~~~~---------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g 227 (284)
T 3smz_A 163 GPRTLYVHWTDAGQLT---------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKG 227 (284)
T ss_dssp TTEECEEEECCGGGCC---------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEE
T ss_pred CCcEEEEEECCCCCCC---------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCccc
Confidence 9999999998764321 123456799999999996 999999999999999999999999999999
Q ss_pred eEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccHHHHHHHHHHhhhcC
Q 008162 277 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 327 (575)
Q Consensus 277 ~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~~~r~~~~~~~~~~~ 327 (575)
||||+|.+.++|.+|+..|||..++|+.|.|.++.++..++..+.++...+
T Consensus 228 ~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~aaq 278 (284)
T 3smz_A 228 FAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALIAAQ 278 (284)
T ss_dssp EEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHHHHHHHHHHHT
T ss_pred EEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcccchhhhhhHHH
Confidence 999999999999999999999999999999999999888877776665543
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=5.8e-44 Score=361.91 Aligned_cols=253 Identities=21% Similarity=0.373 Sum_probs=216.7
Q ss_pred CCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 008162 34 SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113 (575)
Q Consensus 34 ~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v 113 (575)
..+....++|||+|||.++|+++|+++|+.||.|.+|++..+..+ ++|||||+|.+.++|.+|++ +|+..+.|+.|.|
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v 112 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIV 112 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEE
Confidence 345567889999999999999999999999999999999998766 58999999999999999994 8999999999999
Q ss_pred eeecchhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCC-CeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHH
Q 008162 114 GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 192 (575)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G-~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l 192 (575)
.+. ..++|||+|||.++++++|+++|+.|| .|.++.++.+..|+++|||||+|.+.++|.+|++.|
T Consensus 113 ~~~-------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l 179 (292)
T 2ghp_A 113 SHL-------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 179 (292)
T ss_dssp EEC-------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHH
T ss_pred EEC-------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 874 357899999999999999999999999 999999999888999999999999999999999999
Q ss_pred CCCeeCCeeEEEcccccchhHHHHHhhhHHhhhhhccccccceeEEEecCCCC-CCHHHHHHHhhhcCCeeEEEEeeCCC
Q 008162 193 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS-IDDEKLKELFSEFGTITSCKVMRDPS 271 (575)
Q Consensus 193 ~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~-~t~~~l~~~F~~~G~v~~~~i~~~~~ 271 (575)
++..+.|+.|.|.++......... .......++|||+|||.. +|+++|+++|+.||.|.+++|+.+.+
T Consensus 180 ~g~~~~g~~l~v~~a~~~~~~~~~-----------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~ 248 (292)
T 2ghp_A 180 NGLKIEGYTLVTKVSNPLEKSKRT-----------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQK 248 (292)
T ss_dssp TTCEETTEECEEEECCCC--------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC
T ss_pred CCCEeCCcEEEEEECCCCcccccc-----------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCC
Confidence 999999999999998765433221 112345679999999999 99999999999999999999999876
Q ss_pred --CCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccH
Q 008162 272 --GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 272 --g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~ 313 (575)
|.++|||||+|.+.++|.+|+ .|||..++|+.|.|.++.++
T Consensus 249 ~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 249 EHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp ---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred cCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 999999999999999999999 99999999999999999865
No 3
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=5.3e-33 Score=280.12 Aligned_cols=207 Identities=19% Similarity=0.281 Sum_probs=189.4
Q ss_pred CCCHHHHHHHHHHhCCCccCCeeEEEEeCCCCCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCC
Q 008162 1 MFMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQ 79 (575)
Q Consensus 1 f~~~~dA~~a~~~~n~~~i~g~~iri~~s~~~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~ 79 (575)
|.+.+||++|++.||...|.|++|+|.|+.. .++|||+|||.++|+++|+++|+.||.|.+|++..+ .+|.
T Consensus 64 f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~--------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~ 135 (284)
T 3smz_A 64 LLNGEQAEAAINAFHQSRLRERELSVQLQPT--------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQ 135 (284)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECCC--------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC
T ss_pred eCCHHHHHHHHHHcCCCeeCCeEEEEEecCC--------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCc
Confidence 7899999999999999999999999999642 368999999999999999999999999999999988 5899
Q ss_pred cccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecchhhhhhhhhccCCceEEEeCCCcCC-CHHHHHHHhccCCCe
Q 008162 80 SKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDEST-TDEDLKKIFGEYGTI 158 (575)
Q Consensus 80 skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~-tee~L~~~F~~~G~i 158 (575)
++|||||+|.+.++|.+|++.++|..+.|+.|.|.+........ .....++|||+|||.++ ++++|+++|+.||.|
T Consensus 136 ~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~---~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i 212 (284)
T 3smz_A 136 SKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP---ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSP 212 (284)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCT---TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCc---ccCCccEEEEecCCcccCCHHHHHHHhhCCCCe
Confidence 99999999999999999999999999999999999887654332 22456889999999996 999999999999999
Q ss_pred eEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccchhHHHHHh
Q 008162 159 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 218 (575)
Q Consensus 159 ~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~ 218 (575)
.++.+..+.+|+++|||||+|.+.++|.+|++.||+..+.|+.|.|.++..+..+.....
T Consensus 213 ~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~ 272 (284)
T 3smz_A 213 TFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLA 272 (284)
T ss_dssp SEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHHHHHH
T ss_pred EEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcccchhh
Confidence 999999999999999999999999999999999999999999999999988877655444
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.4e-32 Score=263.61 Aligned_cols=175 Identities=34% Similarity=0.513 Sum_probs=157.0
Q ss_pred cCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEccc
Q 008162 129 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207 (575)
Q Consensus 129 ~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a 207 (575)
...++|||+|||+++|+++|+++|++||.|.+|.|++| .+|+++|||||+|.+.++|.+|++.+++..+.|+.+.+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34578999999999999999999999999999999998 57999999999999999999999999999999999999888
Q ss_pred ccchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHH
Q 008162 208 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 287 (575)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~ 287 (575)
......... ...+|||+||++.+|+++|+++|+.||.|.+|+|+.+.. .++|||||+|.+.++
T Consensus 93 ~~~~~~~~~----------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~ 155 (213)
T 4f02_A 93 QRDPSLRKS----------------GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEA 155 (213)
T ss_dssp CCCTHHHHH----------------CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHH
T ss_pred ccccccccc----------------ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHH
Confidence 665432211 234899999999999999999999999999999998854 479999999999999
Q ss_pred HHHHHHHhCCceecceeeeeehhccHHHHHHHH
Q 008162 288 ASRALAEMNGKMIVSKPLYVAVAQRKEERRARL 320 (575)
Q Consensus 288 A~~A~~~lng~~i~g~~l~V~~a~~~~~r~~~~ 320 (575)
|.+|++.|||..|+|+.|.|.++.++.++....
T Consensus 156 a~~Ai~~lng~~~~g~~i~V~~a~~~~~~~~~~ 188 (213)
T 4f02_A 156 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 188 (213)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCHHHHHHHH
T ss_pred HHHHHHHhCCCEECCEEEEEEEcCCCcccchhh
Confidence 999999999999999999999999887776543
No 5
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.6e-32 Score=277.71 Aligned_cols=199 Identities=20% Similarity=0.324 Sum_probs=172.9
Q ss_pred CCCHHHHHHHHHHhCCCccCCeeEEEEeCCCCCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcC-CeeEEEEeeCCCCC
Q 008162 1 MFMLSSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG-NILSCKIATDGSGQ 79 (575)
Q Consensus 1 f~~~~dA~~a~~~~n~~~i~g~~iri~~s~~~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G-~I~~i~v~~~~~g~ 79 (575)
|.+.+||++|++ +|+..|.|++|+|.|+ ..++|||+|||.++++++|+++|+.|| .|.+|++..+..|.
T Consensus 88 f~~~~~A~~A~~-~~~~~~~g~~i~v~~~---------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~ 157 (292)
T 2ghp_A 88 FARYDGALAAIT-KTHKVVGQNEIIVSHL---------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNT 157 (292)
T ss_dssp ESSHHHHHHHHT-TTTCEETTEECEEEEC---------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC------
T ss_pred ECCHHHHHHHHH-hCCcEeCCcEEEEEEC---------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCC
Confidence 789999999996 9999999999999986 367899999999999999999999999 99999999998788
Q ss_pred cccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecchhhhhhh-hhccCCceEEEeCCCcC-CCHHHHHHHhccCCC
Q 008162 80 SKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV-AIKTKFNNVFVKNLDES-TTDEDLKKIFGEYGT 157 (575)
Q Consensus 80 skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~~~~~~~-~~~~~~~~v~V~nLp~~-~tee~L~~~F~~~G~ 157 (575)
++|||||+|.+.++|.+|++.|||..+.|+.|.|.+.......... ......++|||+|||.+ +++++|+++|+.||.
T Consensus 158 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~ 237 (292)
T 2ghp_A 158 SRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGS 237 (292)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999987765543332 23355689999999999 999999999999999
Q ss_pred eeEEEEEeCCC--CCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccc
Q 008162 158 ITSAVVMRDGD--GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210 (575)
Q Consensus 158 i~~i~i~~d~~--g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~ 210 (575)
|..+.+..+.. |.++|||||+|.+.++|.+|+ .||+..+.|+.|.|.++.++
T Consensus 238 v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 238 IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 99999998866 999999999999999999999 99999999999999998764
No 6
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=9.2e-32 Score=259.49 Aligned_cols=176 Identities=31% Similarity=0.537 Sum_probs=156.1
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
-....++|||+|||.++|+++|+++|+.||.|.+|+|++| .+|.++|||||+|.+.++|.+|++.+|+..+.|+.+.+.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 3345679999999999999999999999999999999998 578999999999999999999999999999999999998
Q ss_pred eecchhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCC
Q 008162 115 HFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG 194 (575)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~ 194 (575)
+......... ...++|||+|||+++++++|+++|+.||.|.++.|+.|. +.++|||||+|.+.++|.+|++.||+
T Consensus 91 ~~~~~~~~~~----~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 91 WSQRDPSLRK----SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp ECCCCTHHHH----HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cccccccccc----cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 8765443322 345789999999999999999999999999999999885 44799999999999999999999999
Q ss_pred CeeCCeeEEEcccccchhHHHH
Q 008162 195 KKFDDREWYVGKAQKKSEREQE 216 (575)
Q Consensus 195 ~~~~g~~l~v~~a~~~~~~~~~ 216 (575)
..+.|+.|.|.++..+.++...
T Consensus 166 ~~~~g~~i~V~~a~~~~~~~~~ 187 (213)
T 4f02_A 166 MLLNDRKVFVGRFKSRKEREAE 187 (213)
T ss_dssp CEETTEECEEEECCCHHHHHHH
T ss_pred CEECCEEEEEEEcCCCcccchh
Confidence 9999999999999877655543
No 7
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.2e-31 Score=241.31 Aligned_cols=165 Identities=30% Similarity=0.532 Sum_probs=152.2
Q ss_pred ceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccch
Q 008162 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211 (575)
Q Consensus 132 ~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~ 211 (575)
++|||+|||.++++++|+++|+.||.|.++.++.+.+++++|||||+|.+.++|.+|++.+++..+.|+.|.+.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 47999999999999999999999999999999999889999999999999999999999999999999999999886543
Q ss_pred hHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeC-CCCCCCceEEEEeCCHHHHHH
Q 008162 212 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 290 (575)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~skg~afV~f~s~~~A~~ 290 (575)
. ......++|||+|||..+|+++|+++|+.||.|.++++..+ .+|.++|||||+|.+.++|.+
T Consensus 81 ~----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 81 Q----------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp C----------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred C----------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 2 12335679999999999999999999999999999999988 478999999999999999999
Q ss_pred HHHHhCCceecceeeeeehhcc
Q 008162 291 ALAEMNGKMIVSKPLYVAVAQR 312 (575)
Q Consensus 291 A~~~lng~~i~g~~l~V~~a~~ 312 (575)
|+..|||..++|+.|.|.++++
T Consensus 145 A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 145 AMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHTTCEETTEECEEEESCC
T ss_pred HHHHhCCCccCCcEEEEEecCC
Confidence 9999999999999999999863
No 8
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-30 Score=239.35 Aligned_cols=164 Identities=29% Similarity=0.495 Sum_probs=151.8
Q ss_pred CeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecchh
Q 008162 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 120 (575)
Q Consensus 41 ~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~~ 120 (575)
++|||+|||.++|+++|+++|+.||.|.+|++..+.++.++|||||+|.+.++|.+|++.+|+..+.|+.+.|.+.....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 47999999999999999999999999999999999888999999999999999999999999999999999999876544
Q ss_pred hhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCC
Q 008162 121 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDD 199 (575)
Q Consensus 121 ~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g 199 (575)
.. .....++|||+|||.++++++|+++|+.||.|.++.+..+ .+|.++|||||+|.+.++|.+|++.||+..+.|
T Consensus 81 ~~----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 156 (166)
T 3md3_A 81 QS----SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG 156 (166)
T ss_dssp CC----CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CC----CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 32 2245678999999999999999999999999999999988 689999999999999999999999999999999
Q ss_pred eeEEEcccc
Q 008162 200 REWYVGKAQ 208 (575)
Q Consensus 200 ~~l~v~~a~ 208 (575)
+.|.|.++.
T Consensus 157 ~~i~v~~a~ 165 (166)
T 3md3_A 157 RPLRINWAA 165 (166)
T ss_dssp EECEEEESC
T ss_pred cEEEEEecC
Confidence 999999875
No 9
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=3.3e-30 Score=244.65 Aligned_cols=176 Identities=24% Similarity=0.466 Sum_probs=149.4
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
....++|||+|||.++|+++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++. ++..+.|+.+.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 345778999999999999999999999999999999999 5788999999999999999999976 89999999999998
Q ss_pred ecchhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCC
Q 008162 116 FLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNG 194 (575)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~ 194 (575)
................++|||+|||.++++++|+++|+.||.|..+.++.+ .+|+++|||||+|.+.++|.+|++. ++
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~ 167 (196)
T 1l3k_A 89 AVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KY 167 (196)
T ss_dssp CCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SC
T ss_pred ccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CC
Confidence 876554433333445689999999999999999999999999999999998 4899999999999999999999975 89
Q ss_pred CeeCCeeEEEcccccchhHH
Q 008162 195 KKFDDREWYVGKAQKKSERE 214 (575)
Q Consensus 195 ~~~~g~~l~v~~a~~~~~~~ 214 (575)
..+.|+.|.|.++..+.+..
T Consensus 168 ~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 168 HTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp CEETTEECEEEECC------
T ss_pred cEECCEEEEEEecCChhHhc
Confidence 99999999999998776543
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=4.9e-30 Score=247.38 Aligned_cols=177 Identities=24% Similarity=0.399 Sum_probs=154.9
Q ss_pred cCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEccc
Q 008162 129 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207 (575)
Q Consensus 129 ~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a 207 (575)
...++|||+|||.++++++|+++|+.||.|.++.++++ .+|+++|||||+|.+.++|.+|++.+++..+.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34578999999999999999999999999999999988 48999999999999999999999999999999999999988
Q ss_pred ccchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHH
Q 008162 208 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 286 (575)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~ 286 (575)
.............. ......++|||+||+..+|+++|+++|+.||.|++++|..+. +|.++|||||+|.+.+
T Consensus 106 ~~~~~~~~~~~~~~-------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~ 178 (216)
T 2qfj_A 106 SNIGQAQPIIDQLA-------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQ 178 (216)
T ss_dssp SCCGGGHHHHHHHH-------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCccccchhhhhhh-------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHH
Confidence 76654433221111 112345799999999999999999999999999999999885 7899999999999999
Q ss_pred HHHHHHHHhCCceecceeeeeehhcc
Q 008162 287 EASRALAEMNGKMIVSKPLYVAVAQR 312 (575)
Q Consensus 287 ~A~~A~~~lng~~i~g~~l~V~~a~~ 312 (575)
+|.+|++.|||..++|+.|.|.++..
T Consensus 179 ~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp HHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred HHHHHHHHccCCEeCCcEEEEEEecC
Confidence 99999999999999999999998763
No 11
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=4.5e-30 Score=237.41 Aligned_cols=163 Identities=31% Similarity=0.566 Sum_probs=150.9
Q ss_pred CCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccc
Q 008162 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208 (575)
Q Consensus 130 ~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~ 208 (575)
..++|||+|||.++++++|+++|+.||.|.++.++.+ .+|+++|||||+|.+.++|.+|++.+++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 3578999999999999999999999999999999988 589999999999999999999999999999999999999887
Q ss_pred cchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHH
Q 008162 209 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEE 287 (575)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~ 287 (575)
.... ....++|||+|||..+++++|+++|+.||.|.++++..+. +|.++|||||+|.+.++
T Consensus 82 ~~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~ 143 (168)
T 1b7f_A 82 PGGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 143 (168)
T ss_dssp CCSS------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred CCcc------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHH
Confidence 5432 2245689999999999999999999999999999999886 88999999999999999
Q ss_pred HHHHHHHhCCceecc--eeeeeehh
Q 008162 288 ASRALAEMNGKMIVS--KPLYVAVA 310 (575)
Q Consensus 288 A~~A~~~lng~~i~g--~~l~V~~a 310 (575)
|.+|++.|||..+.| ++|.|.+|
T Consensus 144 A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 144 AQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999999999987 99999875
No 12
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=1.1e-29 Score=234.25 Aligned_cols=162 Identities=32% Similarity=0.603 Sum_probs=148.9
Q ss_pred CceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCC-CCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEccccc
Q 008162 131 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209 (575)
Q Consensus 131 ~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~-~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~ 209 (575)
.++|||+|||.++++++|+++|+.||.|.++.++.+. +|+++|||||+|.+.++|.+|++.+++..+.|+.|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 4789999999999999999999999999999999985 899999999999999999999999999999999999998875
Q ss_pred chhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHH
Q 008162 210 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEA 288 (575)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A 288 (575)
... ....++|||+|||..+++++|+++|+.||.|.++++..+. +|.++|||||+|.+.++|
T Consensus 82 ~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 82 SSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 143 (167)
T ss_dssp CCG------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred Ccc------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHH
Confidence 432 1235689999999999999999999999999999999886 888999999999999999
Q ss_pred HHHHHHhCCceeccee--eeeehh
Q 008162 289 SRALAEMNGKMIVSKP--LYVAVA 310 (575)
Q Consensus 289 ~~A~~~lng~~i~g~~--l~V~~a 310 (575)
.+|++.|||..+.|+. |.|.||
T Consensus 144 ~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 144 EEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999975 777764
No 13
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=99.97 E-value=1.3e-31 Score=213.03 Aligned_cols=79 Identities=33% Similarity=0.431 Sum_probs=75.9
Q ss_pred cccchhhhhcCChHHHHHHHhhhhhhhhhh--ccCCccchhhhhhcCCChHHHHHhcCChHHHHHHHHHHHHHHHHHHHh
Q 008162 478 ITALSTALANASPEQQRTLLGESLYPLVEQ--LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 555 (575)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~--~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~ 555 (575)
.+.++++|+++++++||++|||+|||+|++ ++|++||||||||||||++|||+||+|+++|++||+||++||++|++.
T Consensus 5 ~p~~a~~la~~~p~~Qkq~LGE~LyplV~~~~~~pelAgKITGMLLEmd~~ElL~LLes~e~L~~kV~EA~~vL~~~~~~ 84 (92)
T 1ifw_A 5 SPRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYESFKKE 84 (92)
T ss_dssp CSSCCSSCCSCSCHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHTTSCHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CccchHHHhcCChHHHHHHHHHHHHHHHHHhhcCccccchhhHhHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999 999999999999999999999999999999999999999999999964
Q ss_pred h
Q 008162 556 Q 556 (575)
Q Consensus 556 ~ 556 (575)
+
T Consensus 85 ~ 85 (92)
T 1ifw_A 85 Q 85 (92)
T ss_dssp C
T ss_pred h
Confidence 4
No 14
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=9.1e-30 Score=245.47 Aligned_cols=171 Identities=27% Similarity=0.526 Sum_probs=153.5
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~ 118 (575)
.++|||+|||.++|+++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++.+|+..+.|+.|.|.+...
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 468999999999999999999999999999999988 4888999999999999999999999999999999999988765
Q ss_pred hhhhhhh-----hhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHH
Q 008162 119 KQERETV-----AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 192 (575)
Q Consensus 119 ~~~~~~~-----~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l 192 (575)
....... ......++|||+|||.++++++|+++|+.||.|..+.+..+ .+|+++|||||+|.+.++|.+|++.|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 108 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp CGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHc
Confidence 5433221 12345689999999999999999999999999999999998 58999999999999999999999999
Q ss_pred CCCeeCCeeEEEcccccc
Q 008162 193 NGKKFDDREWYVGKAQKK 210 (575)
Q Consensus 193 ~~~~~~g~~l~v~~a~~~ 210 (575)
|+..+.|+.|.|.++..+
T Consensus 188 ~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 188 NLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp TTCBCSSSBCEEEECSSC
T ss_pred cCCEeCCcEEEEEEecCC
Confidence 999999999999998765
No 15
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=7.7e-30 Score=242.12 Aligned_cols=175 Identities=25% Similarity=0.467 Sum_probs=148.7
Q ss_pred cCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEccc
Q 008162 129 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207 (575)
Q Consensus 129 ~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a 207 (575)
...++|||+|||+++++++|+++|+.||.|.++.++.+ .+|+++|||||+|.+.++|.+|++. ++..+.|+.|.+.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 45678999999999999999999999999999999998 5799999999999999999999965 999999999999998
Q ss_pred ccchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHH
Q 008162 208 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 286 (575)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~ 286 (575)
........ .......++|||+|||+++|+++|+++|+.||.|.+++|+.+. +|.++|||||+|.+.+
T Consensus 90 ~~~~~~~~------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~ 157 (196)
T 1l3k_A 90 VSREDSQR------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157 (196)
T ss_dssp CC-----------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred cCcccccc------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHH
Confidence 76533221 1112345789999999999999999999999999999999886 7899999999999999
Q ss_pred HHHHHHHHhCCceecceeeeeehhccHHHHH
Q 008162 287 EASRALAEMNGKMIVSKPLYVAVAQRKEERR 317 (575)
Q Consensus 287 ~A~~A~~~lng~~i~g~~l~V~~a~~~~~r~ 317 (575)
+|.+|+.. +|..++|+.|.|.++.+++...
T Consensus 158 ~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 158 SVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp HHHHHHHC-SCCEETTEECEEEECC------
T ss_pred HHHHHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 99999986 8999999999999999887654
No 16
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=99.97 E-value=3.7e-32 Score=212.81 Aligned_cols=77 Identities=81% Similarity=1.082 Sum_probs=74.0
Q ss_pred cccchhhhhcCChHHHHHHHhhhhhhhhhhccCCccchhhhhhcCCChHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 008162 478 ITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQ 554 (575)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~ 554 (575)
+.+++++|+++++++||++|||+|||+|++++|++||||||||||||++|||+||+|+++|++||+||++||++|++
T Consensus 7 ~~~~as~La~~~p~~Qkq~LGE~LyplV~~~~p~~AgKITGMLLEmd~~Ell~Lles~e~L~~kv~EA~~vL~~~~~ 83 (85)
T 2dyd_A 7 IGALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQ 83 (85)
T ss_dssp TTTSCHHHHCCCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHCHHHHHHHTTCSHHHHHHHHHHHHHHTSCSS
T ss_pred hhhhHHHHHcCCHHHHHHHHHHHHHHHHHHhCccccchhhhhhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999998864
No 17
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=2.1e-29 Score=232.44 Aligned_cols=162 Identities=30% Similarity=0.547 Sum_probs=148.8
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~-~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~ 118 (575)
+++|||+|||.++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++.+|+..+.|+.+.|.+...
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5789999999999999999999999999999999995 899999999999999999999999999999999999988765
Q ss_pred hhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCee
Q 008162 119 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKF 197 (575)
Q Consensus 119 ~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~ 197 (575)
.... ...++|||+|||.++++++|+++|+.||.|..+.+..+ .+|+++|||||+|.+.++|.+|++.||+..+
T Consensus 82 ~~~~------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 155 (167)
T 1fxl_A 82 SSAS------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP 155 (167)
T ss_dssp CCGG------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred Cccc------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCcc
Confidence 4432 34578999999999999999999999999999999988 4899999999999999999999999999999
Q ss_pred CCee--EEEccc
Q 008162 198 DDRE--WYVGKA 207 (575)
Q Consensus 198 ~g~~--l~v~~a 207 (575)
.|+. |.|.+|
T Consensus 156 ~g~~~~i~v~~A 167 (167)
T 1fxl_A 156 SGATEPITVKFA 167 (167)
T ss_dssp TTCSSCCEEEEC
T ss_pred CCCccceEEEeC
Confidence 9975 777654
No 18
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=1e-29 Score=235.04 Aligned_cols=163 Identities=31% Similarity=0.541 Sum_probs=150.5
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
+.++|||+|||.++|+++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++.+++..+.|+.+.|.+..
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4678999999999999999999999999999999988 578899999999999999999999999999999999999876
Q ss_pred chhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCC-CCCcceeEEEEeCCHHHHHHHHHHHCCCe
Q 008162 118 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKK 196 (575)
Q Consensus 118 ~~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~-~g~skg~afV~F~~~e~A~~Ai~~l~~~~ 196 (575)
..... ...++|||+|||.++++++|+++|+.||.|..+.+..+. +|+++|||||+|.+.++|.+|++.|++..
T Consensus 82 ~~~~~------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 155 (168)
T 1b7f_A 82 PGGES------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVI 155 (168)
T ss_dssp CCSST------TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCccc------CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCE
Confidence 54432 345789999999999999999999999999999999985 89999999999999999999999999999
Q ss_pred eCC--eeEEEccc
Q 008162 197 FDD--REWYVGKA 207 (575)
Q Consensus 197 ~~g--~~l~v~~a 207 (575)
+.| +.|.|.+|
T Consensus 156 ~~g~~~~l~V~~A 168 (168)
T 1b7f_A 156 PEGGSQPLSVRLA 168 (168)
T ss_dssp CTTCSSCCEEEEC
T ss_pred ecCCCeEEEEEeC
Confidence 987 89988764
No 19
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=1.6e-29 Score=235.19 Aligned_cols=165 Identities=22% Similarity=0.383 Sum_probs=146.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCC---CcccEEEEEeCCHHHHHHHHHHhcCCccC---Ceee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSG---QSKGFGFVQFENKESAQNAIDKLNGMLIN---DKQV 111 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g---~skG~afV~F~t~e~A~~Ai~~lng~~i~---g~~v 111 (575)
+.+++|||+|||.++|+++|+++|+.||.|.+|++..+..+ .++|||||+|.+.++|.+|++.+|+..+. ++.+
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 35679999999999999999999999999999999998654 79999999999999999999999998765 5666
Q ss_pred EEeeecchhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHH
Q 008162 112 FVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191 (575)
Q Consensus 112 ~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~ 191 (575)
.+.+....... ....++|||+|||.++++++|+++|+.||.|.++.+.++.+|+++|||||+|.+.++|.+|++.
T Consensus 81 ~~~~~~~~~~~-----~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 81 QMKPADSEKNN-----AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEEECGGGCCS-----CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEccccccccc-----cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHH
Confidence 66665443322 2345789999999999999999999999999999999998899999999999999999999999
Q ss_pred HCCCeeC---CeeEEEccc
Q 008162 192 LNGKKFD---DREWYVGKA 207 (575)
Q Consensus 192 l~~~~~~---g~~l~v~~a 207 (575)
||+..+. ++.|.|.++
T Consensus 156 l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 156 MHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HTTSCCCTTCSSCCEEEEC
T ss_pred hcCCcccCCCCCCeEEEec
Confidence 9998776 489999876
No 20
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=1.3e-29 Score=235.90 Aligned_cols=165 Identities=27% Similarity=0.503 Sum_probs=146.4
Q ss_pred CCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCC---CcceeEEEEeCCHHHHHHHHHHHCCCeeC---CeeEE
Q 008162 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG---KSKCFGFVNFENADDAAKAVEALNGKKFD---DREWY 203 (575)
Q Consensus 130 ~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g---~skg~afV~F~~~e~A~~Ai~~l~~~~~~---g~~l~ 203 (575)
+.++|||+|||.++++++|+++|+.||.|.++.++++..+ +++|||||+|.+.++|.+|++.+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 3578999999999999999999999999999999988654 89999999999999999999999998875 56666
Q ss_pred EcccccchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeC
Q 008162 204 VGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 283 (575)
Q Consensus 204 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~ 283 (575)
+.++..... .....++|||+|||..+|+++|+++|+.||.|.+++++.+.+|.++|||||+|.
T Consensus 82 ~~~~~~~~~-----------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~ 144 (175)
T 3nmr_A 82 MKPADSEKN-----------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFT 144 (175)
T ss_dssp EEECGGGCC-----------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEES
T ss_pred Ecccccccc-----------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEEC
Confidence 666543321 122456899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCceec---ceeeeeehhc
Q 008162 284 TPEEASRALAEMNGKMIV---SKPLYVAVAQ 311 (575)
Q Consensus 284 s~~~A~~A~~~lng~~i~---g~~l~V~~a~ 311 (575)
+.++|.+|++.|||..+. +++|.|.||.
T Consensus 145 ~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 145 TRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999999998876 4999999874
No 21
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=99.97 E-value=5e-32 Score=212.08 Aligned_cols=77 Identities=55% Similarity=0.736 Sum_probs=74.4
Q ss_pred ccccchhhhhcCChHHHHHHHhhhhhhhhhhccCCccchhhhhhcCCChHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 008162 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVA 553 (575)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~ 553 (575)
+.++++++|+++++++||++|||+|||+|++++|++||||||||||||++|||+||+|+++|++||+||++||++|+
T Consensus 7 ~~~l~~s~La~a~p~~Qkq~LGE~LyplV~~~~p~~AgKITGMLLEmd~~ElL~Lle~~e~L~~kV~EA~~vL~~~~ 83 (85)
T 1nmr_A 7 QGQNLSTVLANLTPEQQKNVLGERLYNHIVAINPAAAAKVTGMLLEMDNGEILNLLDTPGLLDAKVQEALEVLNRHM 83 (85)
T ss_dssp CCCTTHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTHHHHHHTTCCTHHHHHHHHHHHHHHTTCCC
T ss_pred CCccCHHHHHcCChHHHHHHHHHHHHHHHHHhCccccchhhHhHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999998775
No 22
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=99.97 E-value=1e-30 Score=225.43 Aligned_cols=81 Identities=44% Similarity=0.762 Sum_probs=76.9
Q ss_pred ccccchhhhhcCChHHHHHHHhhhhhhhhhhccCCccchhhhhhcCCChHHHHHhcCChHHHHHHHHHHHHHHHHHHHhh
Q 008162 477 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 556 (575)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~ 556 (575)
+.++++++|+++++++||++|||+|||+|+.++|++|+||||||||||++|||+||+|+++|++||+||++||++|++++
T Consensus 50 ~~pl~as~La~a~p~eQkq~LGE~LyplV~~~~p~~A~KITGMLLEmd~~ElL~LLes~e~L~~kV~EA~~vL~~~~~~~ 129 (144)
T 1g9l_A 50 QEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKE 129 (144)
T ss_dssp CCCCSHHHHTTCTTTTTTTTTTSSSHHHHHHHTTSCCSSHHHHTTTSSSHHHHHHHHCTTHHHHHHHHHHHHHHTTSSST
T ss_pred cchhhHHHHHcCCHHHHHHHHHHHHHHHHHHhCccccchhhhhhccCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred c
Q 008162 557 A 557 (575)
Q Consensus 557 ~ 557 (575)
.
T Consensus 130 ~ 130 (144)
T 1g9l_A 130 A 130 (144)
T ss_dssp T
T ss_pred c
Confidence 3
No 23
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=99.97 E-value=7e-31 Score=207.74 Aligned_cols=80 Identities=45% Similarity=0.776 Sum_probs=75.6
Q ss_pred cccchhhhhcCChHHHHHHHhhhhhhhhhhccCCccchhhhhhcCCChHHHHHhcCChHHHHHHHHHHHHHHHHHHHhhc
Q 008162 478 ITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 557 (575)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~~~ 557 (575)
.++++++|+++++++||++|||+|||+|++++|++|+||||||||||++|||+||+|+++|++||+||++||++|+.++.
T Consensus 5 ~~l~~s~la~a~p~~Qkq~LGE~Lyp~V~~~~p~~A~KITGMLLEmd~~Ell~lle~~e~L~~kV~EA~~vL~~~~~~~~ 84 (88)
T 3kuj_A 5 SPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 84 (88)
T ss_dssp -CCCHHHHHTSCHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccchHHHHHcCCHHHHHHHHHHHhHHHHHhhCCCccchhhhHhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999998764
No 24
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=1.2e-29 Score=234.55 Aligned_cols=162 Identities=25% Similarity=0.526 Sum_probs=147.8
Q ss_pred CceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEccccc
Q 008162 131 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209 (575)
Q Consensus 131 ~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~ 209 (575)
.++|||+|||.++++++|+++|+.||.|.++.++++ .+|+++|||||+|.+.++|.+|++ ++..+.|+.|.+.++..
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEcccccccc
Confidence 478999999999999999999999999999999988 579999999999999999999997 46789999999988765
Q ss_pred chhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHH
Q 008162 210 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEA 288 (575)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A 288 (575)
..... ..++|||+|||.++++++|+++|+.||.|.++++..+. +|.++|||||+|.+.++|
T Consensus 81 ~~~~~------------------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 142 (167)
T 2cjk_A 81 RDEQD------------------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV 142 (167)
T ss_dssp HHHHH------------------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHH
T ss_pred hhhcc------------------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 43211 24589999999999999999999999999999999885 799999999999999999
Q ss_pred HHHHHHhCCceecceeeeeehhccH
Q 008162 289 SRALAEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 289 ~~A~~~lng~~i~g~~l~V~~a~~~ 313 (575)
.+|++ +||..++|+.|.|.++.++
T Consensus 143 ~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 143 DRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHh-CCCEEeCCeEEEEeecCCC
Confidence 99998 8999999999999998764
No 25
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=2.2e-29 Score=232.62 Aligned_cols=163 Identities=26% Similarity=0.534 Sum_probs=148.6
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
.+++|||+|||.++|+++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++. +..+.|+.+.+.+..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 3678999999999999999999999999999999998 5799999999999999999999984 678999999998876
Q ss_pred chhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCe
Q 008162 118 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKK 196 (575)
Q Consensus 118 ~~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~ 196 (575)
..... ...++|||+|||.++++++|+++|+.||.|.++.+..+ .+|+++|||||+|.+.++|.+|++ +++..
T Consensus 80 ~~~~~------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~ 152 (167)
T 2cjk_A 80 PRDEQ------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFID 152 (167)
T ss_dssp CHHHH------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEEC
T ss_pred chhhc------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEE
Confidence 65433 23468999999999999999999999999999999988 579999999999999999999997 89999
Q ss_pred eCCeeEEEcccccc
Q 008162 197 FDDREWYVGKAQKK 210 (575)
Q Consensus 197 ~~g~~l~v~~a~~~ 210 (575)
+.|+.|.|.++.++
T Consensus 153 ~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 153 FKDRKIEIKRAEPR 166 (167)
T ss_dssp SSSSCEEEEECCCC
T ss_pred eCCeEEEEeecCCC
Confidence 99999999998764
No 26
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=7.9e-29 Score=230.95 Aligned_cols=168 Identities=23% Similarity=0.365 Sum_probs=147.3
Q ss_pred CCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 008162 34 SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113 (575)
Q Consensus 34 ~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v 113 (575)
.......++|||+|||.++|+++|+++|+.||.|..+.+....+|.++|||||+|.+.++|.+|+ .+|+..+.|+.|.|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SSSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 34456688999999999999999999999999887744444467889999999999999999999 59999999999999
Q ss_pred eeecchhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHC
Q 008162 114 GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193 (575)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~ 193 (575)
.+........ ....++|||+|||.++++++|+++|+.||.|..+ +.+|+++|||||+|.+.++|.+|++.|+
T Consensus 86 ~~~~~~~~~~----~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 1fje_B 86 EKPKGRDSKK----VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQ 157 (175)
T ss_dssp ECCCCSSCST----TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred ecCCCccccc----cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhC
Confidence 9887654322 2345789999999999999999999999988765 6788999999999999999999999999
Q ss_pred CCeeCCeeEEEcccccc
Q 008162 194 GKKFDDREWYVGKAQKK 210 (575)
Q Consensus 194 ~~~~~g~~l~v~~a~~~ 210 (575)
+..+.|+.|.|.++..+
T Consensus 158 g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 158 GAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EEEETTEEEEEEECSSC
T ss_pred CCEECCeEEEEEecCCC
Confidence 99999999999998754
No 27
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=3.9e-28 Score=225.33 Aligned_cols=158 Identities=20% Similarity=0.462 Sum_probs=143.1
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhc----C-------CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccC
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSF----G-------NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 107 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~----G-------~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~ 107 (575)
.+++|||+|||.++|+++|+++|+.| | .|.++++.. ++|||||+|.+.++|.+|+ .+|+..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----TTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----CCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 36789999999999999999999999 6 777777654 6899999999999999999 89999999
Q ss_pred CeeeEEeeecchhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHH
Q 008162 108 DKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAA 186 (575)
Q Consensus 108 g~~v~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~ 186 (575)
|+.+.|.+...... ....++|||+|||.++++++|+++|++||.|.++.+..+ .+|+++|||||+|.+.++|.
T Consensus 77 g~~i~v~~~~~~~~------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~ 150 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTD 150 (172)
T ss_dssp TEECEEECCSSCCC------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHH
T ss_pred CceeeecCCcccCC------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHH
Confidence 99999988654332 123578999999999999999999999999999999999 58999999999999999999
Q ss_pred HHHHHHCCCeeCCeeEEEcccc
Q 008162 187 KAVEALNGKKFDDREWYVGKAQ 208 (575)
Q Consensus 187 ~Ai~~l~~~~~~g~~l~v~~a~ 208 (575)
+|++.||+..+.|+.|.|.++.
T Consensus 151 ~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 151 QAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999998863
No 28
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=2.5e-28 Score=233.52 Aligned_cols=176 Identities=17% Similarity=0.234 Sum_probs=142.1
Q ss_pred CCceEEEeCCC-cCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccc
Q 008162 130 KFNNVFVKNLD-ESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208 (575)
Q Consensus 130 ~~~~v~V~nLp-~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~ 208 (575)
..++|||+||+ +++++++|+++|+.||.|.+|+++++ ++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 35789999999 89999999999999999999999875 37899999999999999999999999999999999875
Q ss_pred cchhHHHH---Hh------hhHHhh----------hhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCe--eEEEEe
Q 008162 209 KKSEREQE---LK------GQFEQA----------MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTI--TSCKVM 267 (575)
Q Consensus 209 ~~~~~~~~---~~------~~~~~~----------~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v--~~~~i~ 267 (575)
.+...... .. ..+... ........++.+|||+|||+++|+++|+++|+.||.| .+++++
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~ 158 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVF 158 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEEC
T ss_pred CCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEE
Confidence 43210000 00 000000 0000011345689999999999999999999999999 899998
Q ss_pred eCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecce----eeeeehh
Q 008162 268 RDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK----PLYVAVA 310 (575)
Q Consensus 268 ~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~----~l~V~~a 310 (575)
.+. |.++|||||+|.+.++|.+|+..|||..+.|+ ++.|+++
T Consensus 159 ~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 159 SGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred cCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 876 56679999999999999999999999999876 5777664
No 29
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=4.3e-28 Score=231.91 Aligned_cols=157 Identities=19% Similarity=0.274 Sum_probs=135.9
Q ss_pred CCCeEEEcCCC-CCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 39 GTGNIFIKNLD-KSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 39 ~~~~lfV~nLp-~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
++++|||+||| .++|+++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|.+||+.|||..+.|+.|.|.++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 46789999999 89999999999999999999999875 58999999999999999999999999999999999875
Q ss_pred chhhhh-------------h--------h------h----hccCCceEEEeCCCcCCCHHHHHHHhccCCCe--eEEEEE
Q 008162 118 RKQERE-------------T--------V------A----IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI--TSAVVM 164 (575)
Q Consensus 118 ~~~~~~-------------~--------~------~----~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i--~~i~i~ 164 (575)
...... . . . .....++|||+|||+++++++|+++|++||.| .+++++
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~ 158 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVF 158 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEEC
T ss_pred CCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEE
Confidence 321100 0 0 0 00124579999999999999999999999999 899988
Q ss_pred eCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCe
Q 008162 165 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR 200 (575)
Q Consensus 165 ~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~ 200 (575)
.+. +.++|||||+|.+.++|.+|+..||+..+.|+
T Consensus 159 ~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 159 SGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp SCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred cCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 775 55679999999999999999999999999886
No 30
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=3.8e-28 Score=225.43 Aligned_cols=157 Identities=24% Similarity=0.479 Sum_probs=141.5
Q ss_pred CceEEEeCCCcCCCHHHHHHHhccC----C-------CeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCC
Q 008162 131 FNNVFVKNLDESTTDEDLKKIFGEY----G-------TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD 199 (575)
Q Consensus 131 ~~~v~V~nLp~~~tee~L~~~F~~~----G-------~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g 199 (575)
.++|||+|||.++++++|+++|+.| | .|.++.+. +++|||||+|.+.++|.+|+ .+++..+.|
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----TTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----CCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 4789999999999999999999999 6 66666654 45899999999999999999 899999999
Q ss_pred eeEEEcccccchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceE
Q 008162 200 REWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSG 278 (575)
Q Consensus 200 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~a 278 (575)
+.|.+.++..... ....++|||+|||..+|+++|+++|+.||.|.++++..+. +|.++|||
T Consensus 78 ~~i~v~~~~~~~~------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~a 139 (172)
T 2g4b_A 78 QSLKIRRPHDYQP------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYA 139 (172)
T ss_dssp EECEEECCSSCCC------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEE
T ss_pred ceeeecCCcccCC------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEE
Confidence 9999988754321 1125689999999999999999999999999999999985 89999999
Q ss_pred EEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 279 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 279 fV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
||+|.+.++|.+|++.|||..++|+.|.|.+|.
T Consensus 140 fV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 140 FCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999999999999999999999999999873
No 31
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=9e-28 Score=241.60 Aligned_cols=178 Identities=22% Similarity=0.402 Sum_probs=148.0
Q ss_pred cCCceEEEeCCCcCCCHHHHH----HHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEE
Q 008162 129 TKFNNVFVKNLDESTTDEDLK----KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 204 (575)
Q Consensus 129 ~~~~~v~V~nLp~~~tee~L~----~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v 204 (575)
...++|||+|||+++++++|+ ++|+.||.|.+|.+++ +|+++|||||+|.+.++|.+|++.||+..+.|+.|.|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 456899999999999999977 8999999999998886 6889999999999999999999999999999999999
Q ss_pred cccccchhHHHHHhhhHH------------------hhh-----------------------------------------
Q 008162 205 GKAQKKSEREQELKGQFE------------------QAM----------------------------------------- 225 (575)
Q Consensus 205 ~~a~~~~~~~~~~~~~~~------------------~~~----------------------------------------- 225 (575)
.++..+............ ...
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 998665431110000000 000
Q ss_pred ----------------------------------hhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCC
Q 008162 226 ----------------------------------KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS 271 (575)
Q Consensus 226 ----------------------------------~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~ 271 (575)
.........++|||+||+..+|+++|+++|+.||.|.+|+|+.++
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~- 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR- 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-
Confidence 000122346789999999999999999999999999999999763
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHhCCceec-ceeeeeehhcc
Q 008162 272 GISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLYVAVAQR 312 (575)
Q Consensus 272 g~skg~afV~f~s~~~A~~A~~~lng~~i~-g~~l~V~~a~~ 312 (575)
+|||||+|.+.++|.+|++.|||..+. |+.|.|.|+++
T Consensus 244 ---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 244 ---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred ---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 589999999999999999999999999 99999999863
No 32
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=8.9e-29 Score=230.58 Aligned_cols=164 Identities=27% Similarity=0.397 Sum_probs=144.8
Q ss_pred cCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccc
Q 008162 129 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208 (575)
Q Consensus 129 ~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~ 208 (575)
...++|||+|||.++++++|+++|+.||.+..+.+....+|+++|||||+|.+.++|.+|+ .|++..+.|+.|.|.++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCC
Confidence 4568999999999999999999999999877644444467899999999999999999999 599999999999999987
Q ss_pred cchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHH
Q 008162 209 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 288 (575)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A 288 (575)
.+... .....++|||+|||..+|+++|+++|+.||.|..+ ..+|.++|||||+|.+.++|
T Consensus 90 ~~~~~----------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A 149 (175)
T 1fje_B 90 GRDSK----------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADA 149 (175)
T ss_dssp CSSCS----------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHH
T ss_pred Ccccc----------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHH
Confidence 65321 12245689999999999999999999999988776 56788999999999999999
Q ss_pred HHHHHHhCCceecceeeeeehhccH
Q 008162 289 SRALAEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 289 ~~A~~~lng~~i~g~~l~V~~a~~~ 313 (575)
.+|+..|||..+.|+.|.|.++.++
T Consensus 150 ~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 150 EKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHhCCCEECCeEEEEEecCCC
Confidence 9999999999999999999998754
No 33
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=1.6e-27 Score=226.51 Aligned_cols=166 Identities=20% Similarity=0.436 Sum_probs=144.5
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhc----C-------CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccC
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSF----G-------NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 107 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~----G-------~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~ 107 (575)
.+++|||+|||.++|+++|+++|+.| | .|.++++. .++|||||+|.+.++|.+|+ .+||..+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 36789999999999999999999999 5 56666654 47899999999999999999 89999999
Q ss_pred CeeeEEeeecchhhhhh--------------hhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeC-CCCCcc
Q 008162 108 DKQVFVGHFLRKQERET--------------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSK 172 (575)
Q Consensus 108 g~~v~v~~~~~~~~~~~--------------~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d-~~g~sk 172 (575)
|+.|.|.+......... .......++|||+|||.++++++|+++|+.||.|.++.+..+ .+|+++
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 99999998765422110 001135588999999999999999999999999999999998 489999
Q ss_pred eeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccc
Q 008162 173 CFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210 (575)
Q Consensus 173 g~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~ 210 (575)
|||||+|.+.++|.+|++.|++..+.|+.|.|.++..+
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 99999999999999999999999999999999998765
No 34
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=7.5e-27 Score=234.83 Aligned_cols=165 Identities=25% Similarity=0.378 Sum_probs=144.5
Q ss_pred CCCCeEEEcCCCCCcCHHHHH----HHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 008162 38 SGTGNIFIKNLDKSIDHKALH----DTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~----~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v 113 (575)
..+++|||+|||.++|+++|+ ++|+.||.|.+|++.. +|.++|||||+|.+.++|.+|++.+||..+.|+.|.|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 457899999999999999966 9999999999999886 6779999999999999999999999999999999999
Q ss_pred eeecchhhhhhh--------------------------------------------------------------------
Q 008162 114 GHFLRKQERETV-------------------------------------------------------------------- 125 (575)
Q Consensus 114 ~~~~~~~~~~~~-------------------------------------------------------------------- 125 (575)
.+..........
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 887554321000
Q ss_pred -------------------------------------hhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCC
Q 008162 126 -------------------------------------AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD 168 (575)
Q Consensus 126 -------------------------------------~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~ 168 (575)
......++|||+|||.++++++|+++|+.||.|.++.++.++
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~- 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR- 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-
Confidence 001134679999999999999999999999999999999664
Q ss_pred CCcceeEEEEeCCHHHHHHHHHHHCCCeeC-CeeEEEcccc
Q 008162 169 GKSKCFGFVNFENADDAAKAVEALNGKKFD-DREWYVGKAQ 208 (575)
Q Consensus 169 g~skg~afV~F~~~e~A~~Ai~~l~~~~~~-g~~l~v~~a~ 208 (575)
+|||||+|.+.++|.+|++.||+..+. |+.|.|.++.
T Consensus 244 ---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 ---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 579999999999999999999999999 9999999875
No 35
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=5.7e-27 Score=233.09 Aligned_cols=158 Identities=25% Similarity=0.415 Sum_probs=144.3
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
.....++|||+|||.++|+++|+++|+.||.|.+|++.. ++|||||+|.+.++|.+|++.+||..+.|+.|.|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 345677899999999999999999999999999999965 589999999999999999999999999999999988
Q ss_pred ecchhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHC-C
Q 008162 116 FLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN-G 194 (575)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~-~ 194 (575)
... .++|||+|||.++++++|+++|+.||.|.++.++.|.+|+++|||||+|.+.++|.+|++.|+ +
T Consensus 93 a~~------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~ 160 (261)
T 3sde_A 93 ATH------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDG 160 (261)
T ss_dssp CCC------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHS
T ss_pred ccc------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 643 468999999999999999999999999999999999999999999999999999999999995 4
Q ss_pred CeeC---CeeEEEcccccc
Q 008162 195 KKFD---DREWYVGKAQKK 210 (575)
Q Consensus 195 ~~~~---g~~l~v~~a~~~ 210 (575)
..+. ++.|.|.++...
T Consensus 161 ~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 161 AFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp CEESSSSCCBCEEEECCCE
T ss_pred eEEecCCCceEEEeecccc
Confidence 4444 899999888654
No 36
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=99.95 E-value=1.9e-28 Score=180.30 Aligned_cols=60 Identities=45% Similarity=0.720 Sum_probs=59.0
Q ss_pred HHHHHhhhhhhhhhhccCCccchhhhhhcCCChHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 008162 493 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 552 (575)
Q Consensus 493 ~~~~~g~~l~~~~~~~~~~~a~kitgm~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~ 552 (575)
||++|||+|||+|++++|++||||||||||||++|||+||+|+++|++||+||++||++|
T Consensus 1 qkq~LGe~Lyp~V~~~~p~~A~KITGMLLE~d~~ell~ll~~~e~L~~kv~EA~~vl~~~ 60 (61)
T 1i2t_A 1 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 60 (61)
T ss_dssp CHHHHHHHHHHHHHHHCGGGHHHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCcccccchhhhhccCCHHHHHHHHcCHHHHHHHHHHHHHHHHHc
Confidence 799999999999999999999999999999999999999999999999999999999987
No 37
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=1.6e-27 Score=226.42 Aligned_cols=178 Identities=22% Similarity=0.402 Sum_probs=145.5
Q ss_pred CCceEEEeCCCcCCCHHHHHHHhccCC-----------CeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeC
Q 008162 130 KFNNVFVKNLDESTTDEDLKKIFGEYG-----------TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD 198 (575)
Q Consensus 130 ~~~~v~V~nLp~~~tee~L~~~F~~~G-----------~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~ 198 (575)
..++|||+|||.++++++|+++|+.|| .|.++.+ ++++|||||+|.+.++|.+|+ .|++..+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-----~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-----ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-----cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 357899999999999999999999994 4555444 466899999999999999999 89999999
Q ss_pred CeeEEEcccccchhHHHHHhh--hHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCC
Q 008162 199 DREWYVGKAQKKSEREQELKG--QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISK 275 (575)
Q Consensus 199 g~~l~v~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~sk 275 (575)
|+.|.|.++............ ...............++|||+|||..+++++|+++|+.||.|.++++..+. +|.++
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 999999988654221100000 000000111122456899999999999999999999999999999999986 89999
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccH
Q 008162 276 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 276 g~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~ 313 (575)
|||||+|.+.++|.+|++.|||..++|+.|.|.++.++
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 99999999999999999999999999999999998754
No 38
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=4.6e-27 Score=229.14 Aligned_cols=176 Identities=21% Similarity=0.320 Sum_probs=145.6
Q ss_pred cCCceEEEeCCCc-CCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEccc
Q 008162 129 TKFNNVFVKNLDE-STTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 207 (575)
Q Consensus 129 ~~~~~v~V~nLp~-~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a 207 (575)
...++|||+|||. ++++++|+++|+.||.|.++.++.+. +|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4568999999999 99999999999999999999999874 789999999999999999999999999999999988
Q ss_pred ccchhHH-------HHHhhhHHhhh----------hhccccccceeEEEecCCCCCCHHHHHHHhhhcC-CeeEEEEeeC
Q 008162 208 QKKSERE-------QELKGQFEQAM----------KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFG-TITSCKVMRD 269 (575)
Q Consensus 208 ~~~~~~~-------~~~~~~~~~~~----------~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~~~i~~~ 269 (575)
....... ......+.... .........++|||+|||..+++++|+++|+.|| .|.+++++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~ 187 (229)
T 2adc_A 108 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 187 (229)
T ss_dssp SCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS
T ss_pred cCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC
Confidence 6432100 00000000000 0001123468899999999999999999999999 9999999764
Q ss_pred CCCCCCceEEEEeCCHHHHHHHHHHhCCceec-ceeeeeehhcc
Q 008162 270 PSGISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLYVAVAQR 312 (575)
Q Consensus 270 ~~g~skg~afV~f~s~~~A~~A~~~lng~~i~-g~~l~V~~a~~ 312 (575)
++|||||+|.+.++|.+|+..|||..+. |+.|.|.|+++
T Consensus 188 ----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 188 ----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp ----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred ----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 3789999999999999999999999999 99999999875
No 39
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=1.2e-26 Score=230.84 Aligned_cols=156 Identities=31% Similarity=0.538 Sum_probs=143.2
Q ss_pred cCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccc
Q 008162 129 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 208 (575)
Q Consensus 129 ~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~ 208 (575)
...++|||+|||.++|+++|+++|+.||.|.++.+.+ ++|||||+|.+.++|.+|+..+++..+.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 4557899999999999999999999999999999864 47999999999999999999999999999999998875
Q ss_pred cchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHH
Q 008162 209 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 288 (575)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A 288 (575)
. +++|||+|||..+|+++|+++|+.||.|.+|+|+.+.+|.++|||||+|.+.++|
T Consensus 95 ~------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 95 H------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp C------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHH
T ss_pred c------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHH
Confidence 3 3589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC-Cceec---ceeeeeehhccH
Q 008162 289 SRALAEMN-GKMIV---SKPLYVAVAQRK 313 (575)
Q Consensus 289 ~~A~~~ln-g~~i~---g~~l~V~~a~~~ 313 (575)
.+|+..|| +..+. +++|.|.++...
T Consensus 151 ~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 151 RKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 99999995 55554 999999988743
No 40
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=1.5e-26 Score=225.55 Aligned_cols=169 Identities=19% Similarity=0.341 Sum_probs=145.9
Q ss_pred CCCCCCCCCeEEEcCCCC-CcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeee
Q 008162 33 PSIRKSGTGNIFIKNLDK-SIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111 (575)
Q Consensus 33 ~~~r~~~~~~lfV~nLp~-~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v 111 (575)
|.....++++|||+|||. ++|+++|+++|+.||.|.+|++..+. +|||||+|.+.++|.+|++.+|+..+.|+.|
T Consensus 27 p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 102 (229)
T 2adc_A 27 PGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPI 102 (229)
T ss_dssp GGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBC
T ss_pred CCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 344556788999999999 99999999999999999999999873 7899999999999999999999999999999
Q ss_pred EEeeecchhhhhhh-----------------------------hhccCCceEEEeCCCcCCCHHHHHHHhccCC-CeeEE
Q 008162 112 FVGHFLRKQERETV-----------------------------AIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSA 161 (575)
Q Consensus 112 ~v~~~~~~~~~~~~-----------------------------~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G-~i~~i 161 (575)
.|.+.......... ......++|||+|||.++++++|+++|+.|| .|..+
T Consensus 103 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v 182 (229)
T 2adc_A 103 RITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGF 182 (229)
T ss_dssp EEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEE
T ss_pred EEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEE
Confidence 99877643110000 0012257899999999999999999999999 99999
Q ss_pred EEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeC-CeeEEEccccc
Q 008162 162 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD-DREWYVGKAQK 209 (575)
Q Consensus 162 ~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~-g~~l~v~~a~~ 209 (575)
.++.+ ++|||||+|.+.++|.+|++.|++..+. |+.|.|.++.+
T Consensus 183 ~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 183 KFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp EECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred EEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 99753 3789999999999999999999999999 99999998864
No 41
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=4e-27 Score=224.09 Aligned_cols=174 Identities=21% Similarity=0.319 Sum_probs=143.9
Q ss_pred CceEEEeCCCc-CCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEccccc
Q 008162 131 FNNVFVKNLDE-STTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209 (575)
Q Consensus 131 ~~~v~V~nLp~-~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~ 209 (575)
.++|||+|||. ++++++|+++|+.||.|.++.++.+. +|||||+|.+.++|.+|++.|++..+.|+.|.|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 57899999999 99999999999999999999998774 78999999999999999999999999999999988764
Q ss_pred chhHHHH-------HhhhHHhh--------h--hhccccccceeEEEecCCCCCCHHHHHHHhhhcC-CeeEEEEeeCCC
Q 008162 210 KSEREQE-------LKGQFEQA--------M--KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFG-TITSCKVMRDPS 271 (575)
Q Consensus 210 ~~~~~~~-------~~~~~~~~--------~--~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~~~i~~~~~ 271 (575)
....... ....+... . .........++|||+|||..+++++|+++|+.|| .|.+++++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-- 156 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-- 156 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--
Confidence 4211000 00000000 0 0000113478899999999999999999999999 9999999775
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHhCCceec-ceeeeeehhcc
Q 008162 272 GISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLYVAVAQR 312 (575)
Q Consensus 272 g~skg~afV~f~s~~~A~~A~~~lng~~i~-g~~l~V~~a~~ 312 (575)
.+|+|||+|.+.++|.+|+..|||..++ |+.|.|.|+++
T Consensus 157 --~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 157 --DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp --TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred --CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 2789999999999999999999999999 99999999875
No 42
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=1.4e-26 Score=220.20 Aligned_cols=163 Identities=19% Similarity=0.333 Sum_probs=141.9
Q ss_pred CCCeEEEcCCCC-CcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 39 GTGNIFIKNLDK-SIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 39 ~~~~lfV~nLp~-~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
++++|||+|||. ++++++|+++|+.||.|.+|++..+. +|||||+|.+.++|.+|++.+||..+.|+.|.|.+..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 357899999999 99999999999999999999999863 7899999999999999999999999999999998776
Q ss_pred chhhhhhh-----------------------------hhccCCceEEEeCCCcCCCHHHHHHHhccCC-CeeEEEEEeCC
Q 008162 118 RKQERETV-----------------------------AIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDG 167 (575)
Q Consensus 118 ~~~~~~~~-----------------------------~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G-~i~~i~i~~d~ 167 (575)
........ ......++|||+|||.++++++|+++|+.|| .|.++.++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~- 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-
Confidence 43211000 0012257899999999999999999999999 9999998764
Q ss_pred CCCcceeEEEEeCCHHHHHHHHHHHCCCeeC-CeeEEEccccc
Q 008162 168 DGKSKCFGFVNFENADDAAKAVEALNGKKFD-DREWYVGKAQK 209 (575)
Q Consensus 168 ~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~-g~~l~v~~a~~ 209 (575)
.+|||||+|.+.++|.+|++.||+..+. |+.|.|.++.+
T Consensus 157 ---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 157 ---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp ---TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred ---CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 2789999999999999999999999999 99999988764
No 43
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=3.7e-21 Score=166.31 Aligned_cols=108 Identities=58% Similarity=0.978 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~ 118 (575)
++++|||+|||.++|+++|+++|+.||.|.+|+|..|. +.++|||||+|.+.++|.+||+.||+..+.|+.|.|.++..
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 46789999999999999999999999999999999985 44899999999999999999999999999999999998876
Q ss_pred hhhhhhhh--hccCCceEEEeCCCcCCCHHH
Q 008162 119 KQERETVA--IKTKFNNVFVKNLDESTTDED 147 (575)
Q Consensus 119 ~~~~~~~~--~~~~~~~v~V~nLp~~~tee~ 147 (575)
+..+.... .....++|||+|||+++|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------
T ss_pred ccccccccccccCCCCceEeCCCCCCccccc
Confidence 65443322 234567899999999999864
No 44
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=5.5e-21 Score=174.93 Aligned_cols=148 Identities=21% Similarity=0.273 Sum_probs=112.1
Q ss_pred EEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccchhHHHHHhhhHHhhhhhccccccceeEEE
Q 008162 160 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYI 239 (575)
Q Consensus 160 ~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V 239 (575)
++.++.+.. +++|||||+|.+.++|++|++.+++....+..+.+........... ..............++|||
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~v 75 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE-----GSHHHHHHMDVEGMTSLKV 75 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC-----CCCCSSCCCCCCBCCEEEE
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc-----cccccccccCCCCCCEEEE
Confidence 355666543 6899999999999999999988876443333333322211100000 0000011122345679999
Q ss_pred ecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccH
Q 008162 240 KNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 240 ~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~ 313 (575)
+|||+++|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++..+
T Consensus 76 ~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 76 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 9999999999999999999999999999885 8999999999999999999999999999999999999998754
No 45
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.83 E-value=1.3e-20 Score=172.48 Aligned_cols=141 Identities=22% Similarity=0.291 Sum_probs=111.8
Q ss_pred EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe-------eecchhhhhhhhhccCCceEEEeCCCc
Q 008162 69 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG-------HFLRKQERETVAIKTKFNNVFVKNLDE 141 (575)
Q Consensus 69 ~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~-------~~~~~~~~~~~~~~~~~~~v~V~nLp~ 141 (575)
+++|..+.. .++|||||+|.+.++|++|++.+++....+....+. .................++|||+|||+
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~ 80 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTY 80 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCT
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCC
Confidence 567777643 589999999999999999999887643222222221 111111111111224468899999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEEeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccc
Q 008162 142 STTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210 (575)
Q Consensus 142 ~~tee~L~~~F~~~G~i~~i~i~~d-~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~ 210 (575)
++++++|+++|+.||.|.++.++.| .+|+++|||||+|.+.++|.+|++.||+..+.|+.|.|.++..+
T Consensus 81 ~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 81 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp TCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 9999999999999999999999998 58999999999999999999999999999999999999998754
No 46
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=1e-19 Score=157.22 Aligned_cols=109 Identities=38% Similarity=0.621 Sum_probs=75.5
Q ss_pred CceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccc
Q 008162 131 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 210 (575)
Q Consensus 131 ~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~ 210 (575)
.++|||+|||+++++++|+++|+.||.|.++.|+.|. +.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++..+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4689999999999999999999999999999999885 458999999999999999999999999999999999998776
Q ss_pred hhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHH
Q 008162 211 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250 (575)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 250 (575)
..+...... .....++|||+||+.++|++.
T Consensus 84 ~~~~~~~~~----------~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGA----------RAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC--------------------------------------
T ss_pred ccccccccc----------ccCCCCceEeCCCCCCccccc
Confidence 554332211 112345799999999999874
No 47
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=6.3e-20 Score=166.38 Aligned_cols=138 Identities=22% Similarity=0.323 Sum_probs=113.0
Q ss_pred CCcceeEEEEeCCHHHHHHHHHHH-CCCeeCCeeEEEcccccchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCC
Q 008162 169 GKSKCFGFVNFENADDAAKAVEAL-NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 247 (575)
Q Consensus 169 g~skg~afV~F~~~e~A~~Ai~~l-~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 247 (575)
.+.+|+++|+|.+.++|++|++.+ |+..++| .|.+.++........... ..............++|||+|||+++|
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH--HHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS--SCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc--cccccccccCCCCCCEEEEeCCCCCCC
Confidence 356899999999999999999999 9999999 999988765432100000 000001122234568999999999999
Q ss_pred HHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccH
Q 008162 248 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 248 ~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~ 313 (575)
+++|+++|+.||.|.+|+|+.+ ++|||||+|.+.++|.+|+..|||..++|++|.|.++..+
T Consensus 87 ~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 87 KTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp CHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 9999999999999999999887 6899999999999999999999999999999999998754
No 48
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=4.3e-19 Score=148.83 Aligned_cols=82 Identities=38% Similarity=0.639 Sum_probs=78.1
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
.+++++|||+|||.++|+++|+++|+.||.|.+|+|++|+ +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4678899999999999999999999999999999999886 799999999999999999999999999999999999999
Q ss_pred hcc
Q 008162 310 AQR 312 (575)
Q Consensus 310 a~~ 312 (575)
|++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 875
No 49
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.76 E-value=1.1e-18 Score=158.16 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=101.9
Q ss_pred CCCHHHHHHHHHHh-CCCccCCeeEEEEeCCC--------------CCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcC
Q 008162 1 MFMLSSAARALDVL-NFTPLNNKSIRIMYSHR--------------DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 65 (575)
Q Consensus 1 f~~~~dA~~a~~~~-n~~~i~g~~iri~~s~~--------------~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G 65 (575)
|.+.++|++|++.+ |...|.| ++++-|+.. .........++|||+|||.++|+++|+++|+.||
T Consensus 20 ~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G 98 (150)
T 2i2y_A 20 AVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYG 98 (150)
T ss_dssp CSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHS
T ss_pred ecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 67899999999999 9999999 999988654 1233445678999999999999999999999999
Q ss_pred CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecch
Q 008162 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119 (575)
Q Consensus 66 ~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~ 119 (575)
.|.+|++..+ ++|||||+|.+.++|.+|++.|||..+.|+.|.|.+...+
T Consensus 99 ~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 99 PLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp CEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 9999999886 7899999999999999999999999999999999887653
No 50
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.75 E-value=8.4e-18 Score=143.72 Aligned_cols=89 Identities=12% Similarity=0.273 Sum_probs=82.2
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
+.++|||+||++++++++|+++|++||.|.+|+|+.|. +|+++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45789999999999999999999999999999999986 59999999999999999999999999999999999999998
Q ss_pred cHHHHHHHHH
Q 008162 312 RKEERRARLQ 321 (575)
Q Consensus 312 ~~~~r~~~~~ 321 (575)
.++.+....+
T Consensus 85 ~~~~~~~~~~ 94 (110)
T 3s8s_A 85 KGQQRMKYYE 94 (110)
T ss_dssp TTHHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 8777655443
No 51
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=139.19 Aligned_cols=78 Identities=31% Similarity=0.541 Sum_probs=74.2
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
.++|||+|||.++|+++|+++|+.||.|.+|++..| .+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 457999999999999999999999999999999998 579999999999999999999999999999999999998874
No 52
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.70 E-value=3e-17 Score=151.15 Aligned_cols=138 Identities=19% Similarity=0.332 Sum_probs=79.0
Q ss_pred EEeCCHHHHHHHHHHHCCCeeC--CeeEEEcccccchhHHHHHhhh----HHhhhhhccccccceeEEEecCCCCCCHHH
Q 008162 177 VNFENADDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKGQ----FEQAMKETVDKFQGLNLYIKNLGDSIDDEK 250 (575)
Q Consensus 177 V~F~~~e~A~~Ai~~l~~~~~~--g~~l~v~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 250 (575)
..|++.++|..|+..+++.... |+........... ....... .............+++|||+|||+.+++++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 88 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREA--IHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDE 88 (165)
T ss_dssp ---------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccc--ccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHH
Confidence 7889999999999988876554 4444443322111 0000000 000011122344578899999999999999
Q ss_pred HHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccHHHH
Q 008162 251 LKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 316 (575)
Q Consensus 251 l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~~~r 316 (575)
|+++|+.||.|.+|.|+.+. +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++..+..+
T Consensus 89 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 89 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 99999999999999999884 8899999999999999999999999999999999999999876443
No 53
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.70 E-value=8.6e-17 Score=137.43 Aligned_cols=85 Identities=14% Similarity=0.243 Sum_probs=78.4
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
..++|||+||+.++|+++|+++|+.||.|.+|+|..| .+|.++|||||+|++.++|.+|++.|||..+.|+.|.|..+.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4568999999999999999999999999999999999 469999999999999999999999999999999999999887
Q ss_pred chhhhh
Q 008162 118 RKQERE 123 (575)
Q Consensus 118 ~~~~~~ 123 (575)
....+.
T Consensus 85 ~~~~~~ 90 (110)
T 3s8s_A 85 KGQQRM 90 (110)
T ss_dssp TTHHHH
T ss_pred CCcHHH
Confidence 655443
No 54
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=137.66 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=73.1
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcC-CeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHh-CCceecceeeeeehhc
Q 008162 235 LNLYIKNLGDSIDDEKLKELFSEFG-TITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEM-NGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 235 ~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~l-ng~~i~g~~l~V~~a~ 311 (575)
.+|||+|||.++|+++|+++|+.|| .|.+|+|++|+ +|.+||||||+|.+.++|.+|++.+ |+..++|++|.|.++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 89999999885 7899999999999999999999987 4567999999999987
Q ss_pred cH
Q 008162 312 RK 313 (575)
Q Consensus 312 ~~ 313 (575)
++
T Consensus 82 ~~ 83 (91)
T 2lxi_A 82 PK 83 (91)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 55
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-17 Score=137.29 Aligned_cols=80 Identities=18% Similarity=0.305 Sum_probs=73.4
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCC--eeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCc----eecceee
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGT--ITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGK----MIVSKPL 305 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~--v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~----~i~g~~l 305 (575)
.-.+|||+|||+++|+++|+++|++||. |.+|++++|+ +|.+||||||+|.+.++|.+|++.|||. .++|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3458999999999999999999999995 6789999886 7999999999999999999999999997 5899999
Q ss_pred eeehhcc
Q 008162 306 YVAVAQR 312 (575)
Q Consensus 306 ~V~~a~~ 312 (575)
.|.+|+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999874
No 56
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.69 E-value=8.8e-17 Score=129.92 Aligned_cols=80 Identities=34% Similarity=0.637 Sum_probs=75.9
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeC-CCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhcc
Q 008162 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312 (575)
Q Consensus 234 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~ 312 (575)
+++|||+|||.++++++|+++|+.||.|.+++++.+ .+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999999988 4789999999999999999999999999999999999999886
Q ss_pred H
Q 008162 313 K 313 (575)
Q Consensus 313 ~ 313 (575)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 57
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.69 E-value=9.1e-17 Score=128.72 Aligned_cols=77 Identities=23% Similarity=0.386 Sum_probs=71.8
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhcc
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~ 312 (575)
.+..|||+||++.+|+++|+++|.+||.|.++++.. +||||||+|.+.++|.+|++.||+..+.|+.|+|.+|..
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 456899999999999999999999999999999876 599999999999999999999999999999999999964
Q ss_pred HH
Q 008162 313 KE 314 (575)
Q Consensus 313 ~~ 314 (575)
.+
T Consensus 81 ~~ 82 (89)
T 2wbr_A 81 NE 82 (89)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 58
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=130.75 Aligned_cols=81 Identities=28% Similarity=0.539 Sum_probs=75.2
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
..++|||+|||.++++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45789999999999999999999999999999999985 88999999999999999999999999999999999999987
Q ss_pred cH
Q 008162 312 RK 313 (575)
Q Consensus 312 ~~ 313 (575)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 59
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.68 E-value=8e-17 Score=138.88 Aligned_cols=103 Identities=23% Similarity=0.457 Sum_probs=93.0
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~ 118 (575)
.+++|||+|||.++|+++|+++|+.||.|.+|.+..+ +.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 4678999999999999999999999999999999875 55699999999999999999999999999999999999875
Q ss_pred hhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCC
Q 008162 119 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 157 (575)
Q Consensus 119 ~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~ 157 (575)
.... ++++...++++|.++|++||.
T Consensus 85 ~~~~--------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF--------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT--------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh--------------hhhhHhHhHHHHHHHHHHhCC
Confidence 5433 567888899999999999984
No 60
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.68 E-value=3.4e-17 Score=134.77 Aligned_cols=79 Identities=23% Similarity=0.326 Sum_probs=71.2
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcC--CeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 235 LNLYIKNLGDSIDDEKLKELFSEFG--TITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 235 ~~l~V~nl~~~~t~~~l~~~F~~~G--~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
.+|||+|||+++|+++|+++|+.|| .|.+++++.++ +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999985 89999999999999999999999999999999999999987
Q ss_pred cH
Q 008162 312 RK 313 (575)
Q Consensus 312 ~~ 313 (575)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 65
No 61
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=134.43 Aligned_cols=78 Identities=18% Similarity=0.350 Sum_probs=71.9
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhC--Cceecceeeeee
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN--GKMIVSKPLYVA 308 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~ln--g~~i~g~~l~V~ 308 (575)
....++|||+|||+++|+++|+++|++||.|++|+|+.+ ||||||+|.+.++|.+|++.++ +..+.|++|+|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 345789999999999999999999999999999999976 8999999999999999999886 478999999999
Q ss_pred hhccH
Q 008162 309 VAQRK 313 (575)
Q Consensus 309 ~a~~~ 313 (575)
+++.+
T Consensus 88 ~A~~~ 92 (105)
T 1sjq_A 88 FSNHK 92 (105)
T ss_dssp CCSSS
T ss_pred EcCCC
Confidence 99765
No 62
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.68 E-value=2.8e-17 Score=135.54 Aligned_cols=81 Identities=20% Similarity=0.344 Sum_probs=73.9
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcC-CeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhc-CCccCCeeeEEeee
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFG-NILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLN-GMLINDKQVFVGHF 116 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G-~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~ln-g~~i~g~~v~v~~~ 116 (575)
+++|||+|||.++|+++|+++|+.|| .|.+|+|++| .+|.++|||||+|.+.++|.+|++.++ +..+.|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999998 578999999999999999999999874 56799999999988
Q ss_pred cchh
Q 008162 117 LRKQ 120 (575)
Q Consensus 117 ~~~~ 120 (575)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6654
No 63
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=131.79 Aligned_cols=81 Identities=31% Similarity=0.507 Sum_probs=76.8
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
...++|||+|||..+++++|+++|+.||.|.+|+|..+.+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.+++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999986
Q ss_pred c
Q 008162 312 R 312 (575)
Q Consensus 312 ~ 312 (575)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 64
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=133.94 Aligned_cols=83 Identities=25% Similarity=0.448 Sum_probs=78.4
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
....++|||+|||.++|+++|+++|+.||.|.+++|+.+.+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34567899999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
.++
T Consensus 94 ~~~ 96 (100)
T 2do4_A 94 NSG 96 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 65
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=134.33 Aligned_cols=82 Identities=21% Similarity=0.287 Sum_probs=76.6
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhcc
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~ 312 (575)
..++|||+|||+++|+++|+++|+.||.|.+|+|+.+..|.++|||||+|.+.++|.+|+. +|+..+.|+.|.|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 4568999999999999999999999999999999999889999999999999999999999 999999999999998876
Q ss_pred HHH
Q 008162 313 KEE 315 (575)
Q Consensus 313 ~~~ 315 (575)
-..
T Consensus 89 ~~~ 91 (103)
T 1s79_A 89 YFA 91 (103)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 66
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.67 E-value=4.7e-17 Score=136.67 Aligned_cols=83 Identities=19% Similarity=0.303 Sum_probs=77.5
Q ss_pred cceeEEEecCCC------CCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecc-ee
Q 008162 233 QGLNLYIKNLGD------SIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVS-KP 304 (575)
Q Consensus 233 ~~~~l~V~nl~~------~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g-~~ 304 (575)
..++|||+|||. ++++++|+++|++||.|.+|+|+.++ +|+++|||||+|.+.++|.+|++.|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 356899999999 99999999999999999999999887 59999999999999999999999999999999 99
Q ss_pred eeeehhccHHH
Q 008162 305 LYVAVAQRKEE 315 (575)
Q Consensus 305 l~V~~a~~~~~ 315 (575)
|.|.++.+++.
T Consensus 85 l~V~~a~~~~~ 95 (100)
T 3ns6_A 85 LFLYTMKDVER 95 (100)
T ss_dssp CEEEESHHHHH
T ss_pred EEEEECchhhh
Confidence 99999986543
No 67
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.67 E-value=1.6e-16 Score=129.02 Aligned_cols=80 Identities=29% Similarity=0.484 Sum_probs=75.3
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeC-CCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
...++|||+|||.++++++|+++|+.||.|.+++++.+ .+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35679999999999999999999999999999999887 58889999999999999999999999999999999999987
Q ss_pred c
Q 008162 311 Q 311 (575)
Q Consensus 311 ~ 311 (575)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 68
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.67 E-value=3.4e-17 Score=145.43 Aligned_cols=121 Identities=19% Similarity=0.270 Sum_probs=78.4
Q ss_pred eEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccchhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHH
Q 008162 174 FGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 253 (575)
Q Consensus 174 ~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~ 253 (575)
+.|++|++...+..|+..+++....|+.-. ..... .......++|||+|||.++|+++|++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~-~~~~~------------------~~~~~~~~~l~V~nLp~~~te~~L~~ 66 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSM-SYGRP------------------PPDVEGMTSLKVDNLTYRTSPDTLRR 66 (135)
T ss_dssp -----------------------------C-CSCCS------------------CSSGGGCCCEEEECCCSSCHHHHHHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCC-CcCCC------------------CCCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 678888888889999988887665554311 11111 11223467899999999999999999
Q ss_pred HhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccH
Q 008162 254 LFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 254 ~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~ 313 (575)
+|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.+++.+
T Consensus 67 ~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 67 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp HHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred HHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 99999999999999885 7899999999999999999999999999999999999998754
No 69
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.67 E-value=1.8e-16 Score=131.97 Aligned_cols=82 Identities=26% Similarity=0.426 Sum_probs=77.2
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhcc
Q 008162 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312 (575)
Q Consensus 234 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~ 312 (575)
.++|||+|||.++++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 4689999999999999999999999999999999885 689999999999999999999999999999999999999987
Q ss_pred HHH
Q 008162 313 KEE 315 (575)
Q Consensus 313 ~~~ 315 (575)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 643
No 70
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=132.90 Aligned_cols=82 Identities=30% Similarity=0.474 Sum_probs=77.7
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356799999999999999999999999999999999887 8999999999999999999999999999999999999998
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
..+
T Consensus 86 ~~~ 88 (99)
T 1whw_A 86 TIK 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 71
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.67 E-value=2.8e-16 Score=142.89 Aligned_cols=85 Identities=19% Similarity=0.305 Sum_probs=78.6
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcC--CeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFG--TITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G--~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
..++|||+||++++|+++|+++|+.|| .|.+|+|+.|. +|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 357999999999999999999999999 99999999885 899999999999999999999999999999999999999
Q ss_pred hccHHHHH
Q 008162 310 AQRKEERR 317 (575)
Q Consensus 310 a~~~~~r~ 317 (575)
+.++..+.
T Consensus 134 a~~~~~~~ 141 (156)
T 3n9u_C 134 ATRQNLSQ 141 (156)
T ss_dssp CCHHHHHH
T ss_pred cCCCcchh
Confidence 98876554
No 72
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=130.92 Aligned_cols=81 Identities=35% Similarity=0.619 Sum_probs=76.4
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
..++|||+|||.++++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 46799999999999999999999999999999999885 68999999999999999999999999999999999999987
Q ss_pred cH
Q 008162 312 RK 313 (575)
Q Consensus 312 ~~ 313 (575)
.+
T Consensus 84 ~~ 85 (95)
T 2dnz_A 84 ER 85 (95)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 73
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=134.41 Aligned_cols=84 Identities=62% Similarity=1.026 Sum_probs=78.9
Q ss_pred cccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeee
Q 008162 229 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308 (575)
Q Consensus 229 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~ 308 (575)
......++|||+|||+++|+++|+++|+.||.|.+|+|..+ +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34456789999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred hhccH
Q 008162 309 VAQRK 313 (575)
Q Consensus 309 ~a~~~ 313 (575)
++..+
T Consensus 89 ~a~~~ 93 (103)
T 2d9p_A 89 LAQRK 93 (103)
T ss_dssp ECSSC
T ss_pred Eeccc
Confidence 98865
No 74
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.5e-16 Score=137.06 Aligned_cols=87 Identities=17% Similarity=0.236 Sum_probs=80.7
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCe-eEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTI-TSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v-~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
...++|||+|||+++|+++|+++|+.||.| .+|+|+.+.+|.++|||||+|.+.++|.+|++. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 456799999999999999999999999999 899999999999999999999999999999986 999999999999999
Q ss_pred ccHHHHHHH
Q 008162 311 QRKEERRAR 319 (575)
Q Consensus 311 ~~~~~r~~~ 319 (575)
..++.+...
T Consensus 92 ~~~~~~~~~ 100 (114)
T 2cpy_A 92 TLEDMREIE 100 (114)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 988776543
No 75
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=136.74 Aligned_cols=82 Identities=28% Similarity=0.508 Sum_probs=77.7
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
...++|||+|||.++|+++|+++|+.||.|.+|+|+.+.+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 34579999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred cH
Q 008162 312 RK 313 (575)
Q Consensus 312 ~~ 313 (575)
.+
T Consensus 85 ~~ 86 (116)
T 2fy1_A 85 KP 86 (116)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 76
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.66 E-value=2.2e-16 Score=133.70 Aligned_cols=82 Identities=33% Similarity=0.577 Sum_probs=78.0
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecc---eeeeee
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS---KPLYVA 308 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g---~~l~V~ 308 (575)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+.+|.++|||||+|.+.++|.+|++.|||..+.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred hhccH
Q 008162 309 VAQRK 313 (575)
Q Consensus 309 ~a~~~ 313 (575)
++..+
T Consensus 93 ~a~~~ 97 (105)
T 2dnh_A 93 FADTD 97 (105)
T ss_dssp ESCSS
T ss_pred ECccC
Confidence 99865
No 77
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.66 E-value=3.2e-16 Score=144.18 Aligned_cols=121 Identities=18% Similarity=0.310 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHhCCCccC--CeeEEEEeCCCCC------------------CCCCCCCCeEEEcCCCCCcCHHHHHHH
Q 008162 1 MFMLSSAARALDVLNFTPLN--NKSIRIMYSHRDP------------------SIRKSGTGNIFIKNLDKSIDHKALHDT 60 (575)
Q Consensus 1 f~~~~dA~~a~~~~n~~~i~--g~~iri~~s~~~~------------------~~r~~~~~~lfV~nLp~~ite~~L~~~ 60 (575)
|...+||+.|+..++....+ |+-.+.-|+.+.. ..+....++|||+|||.++++++|+++
T Consensus 13 ~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~ 92 (165)
T 1rk8_A 13 FEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEK 92 (165)
T ss_dssp -----------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHHHH
T ss_pred hhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 56778999999999976666 7677666643211 112345667999999999999999999
Q ss_pred HhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecchhh
Q 008162 61 FSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 121 (575)
Q Consensus 61 F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~~~ 121 (575)
|+.||.|.+|.|..+ .+|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.++..+..
T Consensus 93 F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 93 FCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred hhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 999999999999998 6889999999999999999999999999999999999999876544
No 78
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.66 E-value=3.4e-16 Score=133.02 Aligned_cols=81 Identities=31% Similarity=0.490 Sum_probs=77.3
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
....++|||+|||..+++++|+++|+.||.|.+++|+.+.+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 008162 311 Q 311 (575)
Q Consensus 311 ~ 311 (575)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 79
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.66 E-value=2.3e-16 Score=135.96 Aligned_cols=82 Identities=37% Similarity=0.560 Sum_probs=77.5
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 456799999999999999999999999999999999886 7899999999999999999999999999999999999998
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
..+
T Consensus 103 ~~~ 105 (115)
T 2cpz_A 103 RSK 105 (115)
T ss_dssp CCS
T ss_pred CCC
Confidence 755
No 80
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.5e-16 Score=129.84 Aligned_cols=82 Identities=24% Similarity=0.336 Sum_probs=76.5
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
....++|||+|||.++++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3456789999999999999999999999999999999886 588999999999999999999999999999999999999
Q ss_pred hcc
Q 008162 310 AQR 312 (575)
Q Consensus 310 a~~ 312 (575)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 81
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=132.09 Aligned_cols=82 Identities=18% Similarity=0.341 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHHhhcCC--eeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCC----ccCCe
Q 008162 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGN--ILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGM----LINDK 109 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~ite~~L~~~F~~~G~--I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~----~i~g~ 109 (575)
.....+|||+|||.++|+++|+++|+.||. |.+|++.+| .+|.++|||||+|.+.++|.+|++.|||. .++|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 445778999999999999999999999995 679999998 57999999999999999999999999996 48999
Q ss_pred eeEEeeecc
Q 008162 110 QVFVGHFLR 118 (575)
Q Consensus 110 ~v~v~~~~~ 118 (575)
.|.|.++..
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999988653
No 82
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=131.60 Aligned_cols=79 Identities=24% Similarity=0.316 Sum_probs=72.2
Q ss_pred ccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCce--ecceeeee
Q 008162 230 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM--IVSKPLYV 307 (575)
Q Consensus 230 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~--i~g~~l~V 307 (575)
...++.+|||+|||+.+|+++|+++|++||.|++++++++ ||||||+|.+.++|.+|++.|++.. +.|++|+|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 3446779999999999999999999999999999999864 8999999999999999999999875 78999999
Q ss_pred ehhccH
Q 008162 308 AVAQRK 313 (575)
Q Consensus 308 ~~a~~~ 313 (575)
.+++.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999865
No 83
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.4e-16 Score=132.98 Aligned_cols=83 Identities=30% Similarity=0.452 Sum_probs=78.1
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4467899999999999999999999999999999999885 789999999999999999999999999999999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
+..+
T Consensus 92 a~~~ 95 (103)
T 2cq0_A 92 AKPS 95 (103)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8754
No 84
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.3e-16 Score=130.92 Aligned_cols=82 Identities=28% Similarity=0.508 Sum_probs=76.4
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+..+ ++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 445689999999999999999999999999999999988755 8999999999999999999999999999999999998
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
..+
T Consensus 91 ~~~ 93 (103)
T 2cq3_A 91 TAR 93 (103)
T ss_dssp CSS
T ss_pred ccC
Confidence 754
No 85
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.65 E-value=5.8e-16 Score=126.28 Aligned_cols=81 Identities=33% Similarity=0.603 Sum_probs=74.8
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
..++|||+|||.++++++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++.||+..+.|+.|.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4578999999999999999999999999999999998 588999999999999999999999999999999999999876
Q ss_pred ch
Q 008162 118 RK 119 (575)
Q Consensus 118 ~~ 119 (575)
.+
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 53
No 86
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.8e-16 Score=129.38 Aligned_cols=80 Identities=24% Similarity=0.450 Sum_probs=75.3
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
...++|||+|||.++++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 456789999999999999999999999999999999886 5889999999999999999999999999999999999987
Q ss_pred c
Q 008162 311 Q 311 (575)
Q Consensus 311 ~ 311 (575)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 87
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.9e-16 Score=131.78 Aligned_cols=81 Identities=36% Similarity=0.637 Sum_probs=76.8
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEE-EEeeC-CCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSC-KVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~-~i~~~-~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
.+++|||+|||.++++++|+++|+.||.|.++ +|+.+ .+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46799999999999999999999999999999 99988 58999999999999999999999999999999999999998
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
..+
T Consensus 84 ~~~ 86 (96)
T 1x5t_A 84 FKK 86 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 754
No 88
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.65 E-value=4.2e-16 Score=134.32 Aligned_cols=83 Identities=30% Similarity=0.550 Sum_probs=78.0
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
....++|||+|||..+++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999985 889999999999999999999999999999999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
+..+
T Consensus 92 a~~~ 95 (115)
T 2dgo_A 92 ATRK 95 (115)
T ss_dssp SSCC
T ss_pred ccCC
Confidence 8754
No 89
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.65 E-value=7.1e-16 Score=130.57 Aligned_cols=87 Identities=28% Similarity=0.425 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC---eeeE
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIND---KQVF 112 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g---~~v~ 112 (575)
+....++|||+|||.++++++|+++|+.||.|.+|+|..+.+|.++|||||+|.+.++|.+|++.||+..+.| +.|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 4456789999999999999999999999999999999999889999999999999999999999999999988 9999
Q ss_pred Eeeecchhhh
Q 008162 113 VGHFLRKQER 122 (575)
Q Consensus 113 v~~~~~~~~~ 122 (575)
|.+...+..+
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9988765543
No 90
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.7e-16 Score=130.13 Aligned_cols=79 Identities=19% Similarity=0.301 Sum_probs=74.3
Q ss_pred cceeEEEecCCCCCCHHHHH----HHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeee
Q 008162 233 QGLNLYIKNLGDSIDDEKLK----ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~----~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~ 308 (575)
.+++|||+|||+++++++|+ ++|+.||.|.+|+|+.+..+ +|||||+|.+.++|.+|++.|||..++|+.|.|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 46799999999999999999 99999999999999988766 8999999999999999999999999999999999
Q ss_pred hhccH
Q 008162 309 VAQRK 313 (575)
Q Consensus 309 ~a~~~ 313 (575)
+++.+
T Consensus 86 ~a~~~ 90 (96)
T 2dgx_A 86 LATGA 90 (96)
T ss_dssp ECCCS
T ss_pred EcCCC
Confidence 98643
No 91
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=133.25 Aligned_cols=83 Identities=36% Similarity=0.561 Sum_probs=78.2
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhh-cCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCce-ecceeeeee
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSE-FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM-IVSKPLYVA 308 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~-i~g~~l~V~ 308 (575)
....++|||+|||+++|+++|+++|+. ||.|.+|+|+.+.+|.++|||||+|.+.++|.+|++.|||.. ++|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 345679999999999999999999999 999999999999899999999999999999999999999999 999999999
Q ss_pred hhccH
Q 008162 309 VAQRK 313 (575)
Q Consensus 309 ~a~~~ 313 (575)
++..+
T Consensus 86 ~a~~~ 90 (104)
T 2dhg_A 86 VAIPK 90 (104)
T ss_dssp BCCCC
T ss_pred EccCC
Confidence 98754
No 92
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.9e-16 Score=132.40 Aligned_cols=83 Identities=24% Similarity=0.479 Sum_probs=77.6
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
...+++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3456899999999999999999999999999999999885 689999999999999999999999999999999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
+..+
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8764
No 93
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.9e-16 Score=132.97 Aligned_cols=83 Identities=28% Similarity=0.464 Sum_probs=78.0
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3456799999999999999999999999999999999886 889999999999999999999999999999999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
+..+
T Consensus 92 a~~~ 95 (105)
T 1x5u_A 92 ASAH 95 (105)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 8765
No 94
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.65 E-value=2.4e-16 Score=134.72 Aligned_cols=83 Identities=24% Similarity=0.466 Sum_probs=78.0
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
....++|||+|||..+++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|.+|+..|||..+.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4467899999999999999999999999999999998884 789999999999999999999999999999999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
+..+
T Consensus 103 a~~~ 106 (110)
T 1oo0_B 103 CFVK 106 (110)
T ss_dssp SEES
T ss_pred cccC
Confidence 8765
No 95
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.65 E-value=6.4e-16 Score=124.80 Aligned_cols=80 Identities=31% Similarity=0.602 Sum_probs=75.4
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~ 118 (575)
+.+|||+|||.++++++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 357999999999999999999999999999999998 6889999999999999999999999999999999999998765
Q ss_pred h
Q 008162 119 K 119 (575)
Q Consensus 119 ~ 119 (575)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 96
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.3e-16 Score=130.44 Aligned_cols=82 Identities=21% Similarity=0.420 Sum_probs=76.4
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++ ||+..+.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3456799999999999999999999999999999999885 68899999999999999999998 999999999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
+..+
T Consensus 86 a~~~ 89 (99)
T 2dgs_A 86 AEPR 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 97
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.65 E-value=3.7e-16 Score=130.88 Aligned_cols=81 Identities=25% Similarity=0.491 Sum_probs=75.9
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeE--------EEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceec
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITS--------CKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIV 301 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~--------~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~ 301 (575)
....++|||+|||.++++++|+++|+.||.|.+ ++++.++ +|.++|||||+|.+.++|.+|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345689999999999999999999999999999 9999884 7899999999999999999999999999999
Q ss_pred ceeeeeehhc
Q 008162 302 SKPLYVAVAQ 311 (575)
Q Consensus 302 g~~l~V~~a~ 311 (575)
|+.|.|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999874
No 98
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=5e-16 Score=133.60 Aligned_cols=81 Identities=31% Similarity=0.560 Sum_probs=77.2
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
...++|||+|||+++++++|+++|+.||.|.+|+|+.+++|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 35679999999999999999999999999999999999889999999999999999999999999999999999999986
Q ss_pred c
Q 008162 312 R 312 (575)
Q Consensus 312 ~ 312 (575)
.
T Consensus 93 ~ 93 (114)
T 2do0_A 93 R 93 (114)
T ss_dssp C
T ss_pred c
Confidence 4
No 99
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=128.31 Aligned_cols=83 Identities=24% Similarity=0.432 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
...++|||+|||.++|+++|+++|+.||.|.+|++..+.+|.++|||||+|.+.++|.+|++.||+..+.|+.|.|.+..
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 35678999999999999999999999999999999999889999999999999999999999999999999999999876
Q ss_pred chh
Q 008162 118 RKQ 120 (575)
Q Consensus 118 ~~~ 120 (575)
.+.
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 100
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.1e-16 Score=130.98 Aligned_cols=90 Identities=29% Similarity=0.463 Sum_probs=82.1
Q ss_pred CCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCee
Q 008162 32 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQ 110 (575)
Q Consensus 32 ~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~ 110 (575)
++..+....++|||+|||.++++++|+++|+.||.|.+|++..+ .++.++|||||+|.+.++|.+|++.||+..|.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (103)
T 2cq0_A 7 GPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 86 (103)
T ss_dssp CSCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 34455667889999999999999999999999999999999998 58899999999999999999999999999999999
Q ss_pred eEEeeecchhh
Q 008162 111 VFVGHFLRKQE 121 (575)
Q Consensus 111 v~v~~~~~~~~ 121 (575)
|.|.+...+..
T Consensus 87 l~v~~a~~~~~ 97 (103)
T 2cq0_A 87 LNVEWAKPSTN 97 (103)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEECCCCCC
Confidence 99998876543
No 101
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.64 E-value=2.4e-16 Score=129.62 Aligned_cols=81 Identities=25% Similarity=0.349 Sum_probs=71.1
Q ss_pred CeEEEcCCCCCcCHHHHHHHHhhcC--CeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 41 GNIFIKNLDKSIDHKALHDTFSSFG--NILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 41 ~~lfV~nLp~~ite~~L~~~F~~~G--~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
.+|||+|||.++|+++|+++|+.|| .|.+|++..| .+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|....
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999999999 589999999999999999999999999999999999998877
Q ss_pred chhh
Q 008162 118 RKQE 121 (575)
Q Consensus 118 ~~~~ 121 (575)
....
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 102
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.4e-16 Score=129.99 Aligned_cols=82 Identities=32% Similarity=0.483 Sum_probs=76.0
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+..+ ++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 345679999999999999999999999999999999998544 7999999999999999999999999999999999998
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
..+
T Consensus 91 ~~~ 93 (103)
T 2cqi_A 91 TTP 93 (103)
T ss_dssp CCT
T ss_pred CCC
Confidence 864
No 103
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.3e-16 Score=130.06 Aligned_cols=88 Identities=41% Similarity=0.720 Sum_probs=80.8
Q ss_pred CCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 008162 34 SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113 (575)
Q Consensus 34 ~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v 113 (575)
.......++|||+|||.++|+++|+++|+.||.|.+|++..+ +|.++|||||+|.+.++|.+|++.||+..+.|+.|.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 344557889999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred eeecchhhh
Q 008162 114 GHFLRKQER 122 (575)
Q Consensus 114 ~~~~~~~~~ 122 (575)
.+...+..+
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2d9p_A 88 ALAQRKEER 96 (103)
T ss_dssp EECSSCCCC
T ss_pred EEecccccC
Confidence 998765543
No 104
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.64 E-value=3.8e-16 Score=135.30 Aligned_cols=84 Identities=17% Similarity=0.247 Sum_probs=78.7
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCC---eeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeee
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGT---ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~---v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~ 308 (575)
...++|||+|||+++|+++|+++|+.||. |.+|+|+.+.+|+++|||||+|.+.++|.+|++ +|+..|+|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45678999999999999999999999999 899999999889999999999999999999999 99999999999999
Q ss_pred hhccHHHH
Q 008162 309 VAQRKEER 316 (575)
Q Consensus 309 ~a~~~~~r 316 (575)
++..++..
T Consensus 94 ~a~~~~~~ 101 (118)
T 2db1_A 94 KSHRTEMD 101 (118)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99877654
No 105
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.4e-16 Score=132.31 Aligned_cols=83 Identities=23% Similarity=0.479 Sum_probs=77.7
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC--CCCCCceEEEEeCCHHHHHHHHHHh-CCceecceeeee
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP--SGISKGSGFVAFSTPEEASRALAEM-NGKMIVSKPLYV 307 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~--~g~skg~afV~f~s~~~A~~A~~~l-ng~~i~g~~l~V 307 (575)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.| |+..+.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 4467899999999999999999999999999999999883 8899999999999999999999999 999999999999
Q ss_pred ehhccH
Q 008162 308 AVAQRK 313 (575)
Q Consensus 308 ~~a~~~ 313 (575)
.++..+
T Consensus 92 ~~a~~~ 97 (107)
T 2cph_A 92 EWADSE 97 (107)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 998754
No 106
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=7.3e-16 Score=127.94 Aligned_cols=84 Identities=31% Similarity=0.656 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
+.+++|||+|||.++++++|+++|+.||.|.+|++..+ .++.++|||||+|.+.++|.+|++.||+..+.|+.|.|.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35679999999999999999999999999999999998 46889999999999999999999999999999999999998
Q ss_pred cchhh
Q 008162 117 LRKQE 121 (575)
Q Consensus 117 ~~~~~ 121 (575)
..+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76544
No 107
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.64 E-value=8.9e-16 Score=127.77 Aligned_cols=84 Identities=21% Similarity=0.419 Sum_probs=78.1
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~ 118 (575)
+++|||+|||.++++++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++.+||..+.|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 578999999999999999999999999999999998 5788999999999999999999999999999999999999877
Q ss_pred hhhhh
Q 008162 119 KQERE 123 (575)
Q Consensus 119 ~~~~~ 123 (575)
+....
T Consensus 82 ~~~~~ 86 (96)
T 2x1f_A 82 SDISG 86 (96)
T ss_dssp SSGGG
T ss_pred CCCCC
Confidence 65443
No 108
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.64 E-value=6.9e-16 Score=131.44 Aligned_cols=84 Identities=31% Similarity=0.638 Sum_probs=78.1
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
...+.++|||+|||.++++++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++.+||..+.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4456789999999999999999999999999999999988 578899999999999999999999999999999999999
Q ss_pred eecch
Q 008162 115 HFLRK 119 (575)
Q Consensus 115 ~~~~~ 119 (575)
++..+
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 87654
No 109
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.64 E-value=4e-16 Score=135.11 Aligned_cols=81 Identities=36% Similarity=0.548 Sum_probs=75.6
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
....++|||+|||+++++++|+++|+.||.|.+++|+.++ +|.++|||||+|.+.++|.+|++.|||..++|+.|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4457899999999999999999999999999999999884 789999999999999999999999999999999999998
Q ss_pred hc
Q 008162 310 AQ 311 (575)
Q Consensus 310 a~ 311 (575)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 110
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.64 E-value=2.7e-16 Score=152.36 Aligned_cols=85 Identities=21% Similarity=0.295 Sum_probs=78.7
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcC--CeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFG--TITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G--~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
..++|||+||++++|+++|+++|+.|| .|.+|+|+.++ +|++||||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 99999999985 899999999999999999999999999999999999999
Q ss_pred hccHHHHH
Q 008162 310 AQRKEERR 317 (575)
Q Consensus 310 a~~~~~r~ 317 (575)
++++....
T Consensus 147 a~~~~~~~ 154 (229)
T 3q2s_C 147 VNKQFLSQ 154 (229)
T ss_dssp CCHHHHHH
T ss_pred CCCCccch
Confidence 98776554
No 111
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.9e-16 Score=132.24 Aligned_cols=82 Identities=28% Similarity=0.463 Sum_probs=76.9
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeC-CCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+ .++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 35679999999999999999999999999999999988 47899999999999999999999999999999999999998
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
..+
T Consensus 90 ~~~ 92 (102)
T 2cqb_A 90 KPM 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 112
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.8e-16 Score=131.49 Aligned_cols=82 Identities=28% Similarity=0.513 Sum_probs=76.9
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
...++|||+|||.++++++|+++|+.||.|.+++|+.+. ++.++|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356799999999999999999999999999999999875 7889999999999999999999999999999999999998
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
..+
T Consensus 90 ~~~ 92 (102)
T 1x5s_A 90 GKS 92 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 754
No 113
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4e-16 Score=130.37 Aligned_cols=81 Identities=37% Similarity=0.667 Sum_probs=75.1
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCC--C--CCCceEEEEeCCHHHHHHHHHHhCCceecceeeeee
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS--G--ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~--g--~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~ 308 (575)
..++|||+|||+++++++|+++|+.||.|.+|+|..+.. | .++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 457899999999999999999999999999999998753 3 889999999999999999999999999999999999
Q ss_pred hhccH
Q 008162 309 VAQRK 313 (575)
Q Consensus 309 ~a~~~ 313 (575)
++..+
T Consensus 84 ~a~~~ 88 (98)
T 2cpf_A 84 ISERA 88 (98)
T ss_dssp CSSCS
T ss_pred EccCC
Confidence 98754
No 114
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.7e-16 Score=132.87 Aligned_cols=85 Identities=27% Similarity=0.504 Sum_probs=79.3
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhcc
Q 008162 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312 (575)
Q Consensus 234 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~ 312 (575)
.++|||+|||..+++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 4689999999999999999999999999999999885 788999999999999999999999999999999999999998
Q ss_pred HHHHHH
Q 008162 313 KEERRA 318 (575)
Q Consensus 313 ~~~r~~ 318 (575)
+..+..
T Consensus 88 ~~~~~~ 93 (104)
T 1p1t_A 88 EKNKEE 93 (104)
T ss_dssp TTHHHH
T ss_pred ccchhh
Confidence 766543
No 115
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=8e-16 Score=128.77 Aligned_cols=85 Identities=28% Similarity=0.487 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~-~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
...++|||+|||.++|+++|+++|+.||.|.+|++..+. ++.++|||||+|.+.++|.+|++.||+..+.|+.|.|.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456789999999999999999999999999999999985 8999999999999999999999999999999999999998
Q ss_pred cchhhh
Q 008162 117 LRKQER 122 (575)
Q Consensus 117 ~~~~~~ 122 (575)
..+...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 776543
No 116
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.2e-16 Score=133.04 Aligned_cols=83 Identities=28% Similarity=0.477 Sum_probs=76.6
Q ss_pred ccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 230 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 230 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
.....++|||+||+.++++++|+++|+.||.|.+++++.+.. .++|||||+|.+.++|.+|++.|||..++|+.|.|.+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 344678999999999999999999999999999999998864 4899999999999999999999999999999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
+..+
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8754
No 117
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.63 E-value=6.6e-16 Score=126.49 Aligned_cols=78 Identities=21% Similarity=0.420 Sum_probs=74.2
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhcc
Q 008162 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312 (575)
Q Consensus 234 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~ 312 (575)
.++|||+|||.++++++|+++|+.||.|.++++..+. +|.++|||||+|.+.++|.+|+ .+||..+.|+.|.|.+++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 4589999999999999999999999999999999885 8899999999999999999999 8999999999999999864
No 118
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.63 E-value=2.8e-16 Score=139.10 Aligned_cols=84 Identities=17% Similarity=0.246 Sum_probs=78.7
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCC---eeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeee
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGT---ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~---v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~ 308 (575)
...++|||+|||+++|+++|+++|+.||. |.+|+|+.+++|+++|||||+|.+.++|.+|++ +|+..++|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 35679999999999999999999999999 899999999889999999999999999999999 99999999999999
Q ss_pred hhccHHHH
Q 008162 309 VAQRKEER 316 (575)
Q Consensus 309 ~a~~~~~r 316 (575)
++..++..
T Consensus 121 ~a~~~e~~ 128 (136)
T 2hgl_A 121 KSHRTEMD 128 (136)
T ss_dssp ECCHHHHH
T ss_pred ECChHHHH
Confidence 99877654
No 119
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.63 E-value=4.9e-16 Score=132.36 Aligned_cols=83 Identities=34% Similarity=0.598 Sum_probs=77.6
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
....++|||+|||..+++++|+++|+.||.|.+++|+.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999884 788999999999999999999999999999999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
+.++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8765
No 120
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.5e-16 Score=131.98 Aligned_cols=82 Identities=26% Similarity=0.422 Sum_probs=76.8
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 356799999999999999999999999999999999886 5889999999999999999999999999999999999998
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
..+
T Consensus 91 ~~~ 93 (103)
T 2dnm_A 91 RYG 93 (103)
T ss_dssp SSC
T ss_pred CcC
Confidence 753
No 121
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=127.14 Aligned_cols=83 Identities=27% Similarity=0.415 Sum_probs=76.6
Q ss_pred CCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeE--------EEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 008162 34 SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS--------CKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGM 104 (575)
Q Consensus 34 ~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~--------i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~ 104 (575)
.......++|||+|||.++|+++|+++|+.||.|.+ |++..+ .+|.++|||||+|.+.++|.+|++.|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 334456789999999999999999999999999999 999998 67899999999999999999999999999
Q ss_pred ccCCeeeEEeee
Q 008162 105 LINDKQVFVGHF 116 (575)
Q Consensus 105 ~i~g~~v~v~~~ 116 (575)
.+.|+.|.|.++
T Consensus 87 ~~~g~~l~V~~A 98 (99)
T 2la6_A 87 EFSGNPIKVSFA 98 (99)
T ss_dssp BSSSSBCEEEEC
T ss_pred EeCCcEEEEEec
Confidence 999999999875
No 122
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.63 E-value=6.1e-16 Score=127.61 Aligned_cols=81 Identities=28% Similarity=0.453 Sum_probs=75.9
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
...++|||+|||.++++++|+++|+.||.|.+++|..+ +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 35679999999999999999999999999999999985 78899999999999999999999999999999999999987
Q ss_pred cH
Q 008162 312 RK 313 (575)
Q Consensus 312 ~~ 313 (575)
..
T Consensus 85 ~~ 86 (92)
T 2dgv_A 85 NA 86 (92)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 123
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=8.6e-16 Score=130.70 Aligned_cols=80 Identities=19% Similarity=0.415 Sum_probs=74.9
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccH
Q 008162 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 234 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~ 313 (575)
.++|||+|||+++|+++|+++|+.| .|.+|+|+.+++|+++|||||+|.+.++|.+|+ .+|+..++|+.|.|..+..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 4589999999999999999999999 899999999988999999999999999999999 69999999999999988765
Q ss_pred HH
Q 008162 314 EE 315 (575)
Q Consensus 314 ~~ 315 (575)
+.
T Consensus 94 ~~ 95 (109)
T 2dnn_A 94 QW 95 (109)
T ss_dssp HH
T ss_pred ch
Confidence 43
No 124
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=129.22 Aligned_cols=84 Identities=24% Similarity=0.460 Sum_probs=77.7
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
+....++|||+|||.++++++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 4456778999999999999999999999999999999998 568999999999999999999999999999999999999
Q ss_pred eecch
Q 008162 115 HFLRK 119 (575)
Q Consensus 115 ~~~~~ 119 (575)
++..+
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 87654
No 125
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.5e-16 Score=132.92 Aligned_cols=83 Identities=23% Similarity=0.475 Sum_probs=77.4
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
..++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+ .|||..+.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 34689999999999999999999999999999999886 5899999999999999999999 999999999999999998
Q ss_pred cHHHH
Q 008162 312 RKEER 316 (575)
Q Consensus 312 ~~~~r 316 (575)
.+..+
T Consensus 103 ~~~~~ 107 (114)
T 2cq4_A 103 AEKNR 107 (114)
T ss_dssp HHHHH
T ss_pred CCccC
Confidence 77655
No 126
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.63 E-value=1.2e-15 Score=131.49 Aligned_cols=85 Identities=35% Similarity=0.524 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~-~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
....++|||+|||.++++++|+++|+.||.|.+|+|..+. ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999999994 899999999999999999999999999999999999998
Q ss_pred ecchhh
Q 008162 116 FLRKQE 121 (575)
Q Consensus 116 ~~~~~~ 121 (575)
...+..
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 876554
No 127
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=3.2e-16 Score=131.78 Aligned_cols=96 Identities=25% Similarity=0.420 Sum_probs=82.3
Q ss_pred CeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecchh
Q 008162 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 120 (575)
Q Consensus 41 ~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~~ 120 (575)
++|||+|||.++|+++|+++|+.||.|.+|++..+ ++|||||+|.+.++|.+|++.||+..+.|+.|.|.+...+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 47999999999999999999999999999999986 79999999999999999999999999999999999887655
Q ss_pred hhhhhhh----ccCCceEEEeCCC
Q 008162 121 ERETVAI----KTKFNNVFVKNLD 140 (575)
Q Consensus 121 ~~~~~~~----~~~~~~v~V~nLp 140 (575)
....... .....++||+||+
T Consensus 77 ~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 77 RRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CcccCCCCCccccCCCceecCCCC
Confidence 3321111 1225679999986
No 128
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=126.74 Aligned_cols=80 Identities=29% Similarity=0.476 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
...++|||+|||.++++++|+++|+.||.|.+|++..+.+|.++|||||+|.+.++|.+|++.||+..+.|+.|.|.+..
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 35678999999999999999999999999999999999889999999999999999999999999999999999998764
No 129
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.63 E-value=9.3e-16 Score=124.46 Aligned_cols=79 Identities=30% Similarity=0.532 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
...++|||+|||.++++++|+++|+.||.|.+|++..+ .++.++|||||+|.+.++|.+|++.+||..+.|+.|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45678999999999999999999999999999999988 78889999999999999999999999999999999999875
No 130
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.63 E-value=7.6e-16 Score=134.62 Aligned_cols=82 Identities=29% Similarity=0.469 Sum_probs=77.8
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
...+++|||+||+..+++++|+++|+.||.|.+|+|..+.+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 34568999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred cc
Q 008162 311 QR 312 (575)
Q Consensus 311 ~~ 312 (575)
..
T Consensus 112 ~~ 113 (124)
T 2kt5_A 112 AS 113 (124)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 131
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6e-16 Score=132.89 Aligned_cols=83 Identities=25% Similarity=0.469 Sum_probs=77.4
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCee--------EEEEeeC-CCCCCCceEEEEeCCHHHHHHHHHHhCCceec
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT--------SCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~--------~~~i~~~-~~g~skg~afV~f~s~~~A~~A~~~lng~~i~ 301 (575)
....++|||+|||.++|+++|+++|+.||.|. .|+|+.+ .+|.++|||||+|.+.++|.+|++.|||..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 44678999999999999999999999999999 6999988 58999999999999999999999999999999
Q ss_pred ceeeeeehhccH
Q 008162 302 SKPLYVAVAQRK 313 (575)
Q Consensus 302 g~~l~V~~a~~~ 313 (575)
|+.|.|.++..+
T Consensus 92 g~~l~V~~a~~~ 103 (113)
T 2cpe_A 92 GSKLKVSLARKK 103 (113)
T ss_dssp TEECEEECSSCC
T ss_pred CCEEEEEECCCC
Confidence 999999998754
No 132
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=7.7e-16 Score=131.73 Aligned_cols=83 Identities=30% Similarity=0.506 Sum_probs=77.5
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhC------Cceecce
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN------GKMIVSK 303 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~ln------g~~i~g~ 303 (575)
....++|||+|||+++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|| +..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3456799999999999999999999999999999999885 68899999999999999999999999 9999999
Q ss_pred eeeeehhccH
Q 008162 304 PLYVAVAQRK 313 (575)
Q Consensus 304 ~l~V~~a~~~ 313 (575)
.|.|.++..+
T Consensus 92 ~l~v~~a~~~ 101 (111)
T 1x4h_A 92 QLKVDLAVTR 101 (111)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEECCCC
Confidence 9999998765
No 133
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.4e-16 Score=128.54 Aligned_cols=84 Identities=42% Similarity=0.718 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEE-EEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i-~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
++.++|||+|||.++++++|+++|+.||.|.+| ++..+ .++.++|||||+|.+.++|.+|++.||+..+.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 99998 7889999999999999999999999999999999999999
Q ss_pred ecchhh
Q 008162 116 FLRKQE 121 (575)
Q Consensus 116 ~~~~~~ 121 (575)
+..+..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 876543
No 134
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-15 Score=125.35 Aligned_cols=82 Identities=28% Similarity=0.431 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
.....++|||+|||.++++++|+++|+.||.|.+|++..+ .++.++|||||+|.+.++|.+|++.||+..+.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3445778999999999999999999999999999999998 468899999999999999999999999999999999998
Q ss_pred eec
Q 008162 115 HFL 117 (575)
Q Consensus 115 ~~~ 117 (575)
++.
T Consensus 91 ~a~ 93 (95)
T 2cqc_A 91 GPS 93 (95)
T ss_dssp CCS
T ss_pred ecC
Confidence 764
No 135
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.63 E-value=7.2e-17 Score=171.02 Aligned_cols=82 Identities=20% Similarity=0.370 Sum_probs=77.0
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
...++|||+||++.+|+++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 345799999999999999999999999999999999885 8999999999999999999999999999999999999998
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
..+
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 754
No 136
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.63 E-value=6e-16 Score=136.15 Aligned_cols=83 Identities=25% Similarity=0.348 Sum_probs=77.7
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999999885 689999999999999999999999999999999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
+..+
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 8764
No 137
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.63 E-value=6.3e-16 Score=131.14 Aligned_cols=83 Identities=28% Similarity=0.586 Sum_probs=77.1
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCcee---cceeee
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMI---VSKPLY 306 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i---~g~~l~ 306 (575)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 3456799999999999999999999999999999999886 689999999999999999999999999998 899999
Q ss_pred eehhccH
Q 008162 307 VAVAQRK 313 (575)
Q Consensus 307 V~~a~~~ 313 (575)
|.++..+
T Consensus 90 v~~a~~~ 96 (106)
T 2dgp_A 90 VKPADSE 96 (106)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 9998754
No 138
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=7.5e-16 Score=128.93 Aligned_cols=81 Identities=25% Similarity=0.434 Sum_probs=76.1
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCee-EEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceeccee----e
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTIT-SCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP----L 305 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~-~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~----l 305 (575)
...++|||+|||.++++++|+++|+.||.|. +++|+.++ +|.++|||||+|.+.++|.+|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3567999999999999999999999999999 99999886 7899999999999999999999999999999999 9
Q ss_pred eeehhcc
Q 008162 306 YVAVAQR 312 (575)
Q Consensus 306 ~V~~a~~ 312 (575)
.|.++..
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 9998864
No 139
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=129.24 Aligned_cols=87 Identities=22% Similarity=0.455 Sum_probs=79.7
Q ss_pred CCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 008162 35 IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113 (575)
Q Consensus 35 ~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~-~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v 113 (575)
......++|||+|||.++|+++|+++|+.||.|.+|++..+. ++.++|||||+|.+.++|.+|++.||+..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 344567899999999999999999999999999999999984 8899999999999999999999999999999999999
Q ss_pred eeecchhh
Q 008162 114 GHFLRKQE 121 (575)
Q Consensus 114 ~~~~~~~~ 121 (575)
.+...+..
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 98866543
No 140
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.2e-16 Score=131.38 Aligned_cols=77 Identities=19% Similarity=0.294 Sum_probs=70.7
Q ss_pred ccceeEEEecCCC-CCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCc--eecceeeeee
Q 008162 232 FQGLNLYIKNLGD-SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK--MIVSKPLYVA 308 (575)
Q Consensus 232 ~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~--~i~g~~l~V~ 308 (575)
.++++|||+|||+ .+|+++|+++|++||.|.+|+|+.+ +|||||+|.+.++|.+|++.||+. .+.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 3577999999999 9999999999999999999999876 789999999999999999999864 5999999999
Q ss_pred hhccH
Q 008162 309 VAQRK 313 (575)
Q Consensus 309 ~a~~~ 313 (575)
+++.+
T Consensus 88 ~a~~~ 92 (102)
T 1x4d_A 88 LSQKY 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 98853
No 141
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.62 E-value=2.9e-16 Score=128.36 Aligned_cols=81 Identities=25% Similarity=0.442 Sum_probs=74.2
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCC-C-CCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-G-ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~-g-~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
..++|||+|||.++|+++|+++|+.||.|.++++..+.. + .++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 357899999999999999999999999999999988762 3 38999999999999999999999999999999999998
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
...
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 142
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.62 E-value=2.2e-15 Score=129.78 Aligned_cols=87 Identities=31% Similarity=0.566 Sum_probs=80.0
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
.....++|||+|||.++|+++|+++|+.||.|.+|++..+ .++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4456789999999999999999999999999999999999 589999999999999999999999999999999999999
Q ss_pred eecchhhh
Q 008162 115 HFLRKQER 122 (575)
Q Consensus 115 ~~~~~~~~ 122 (575)
+...+...
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 98765443
No 143
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=131.71 Aligned_cols=84 Identities=29% Similarity=0.509 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
...++|||+|||.++|+++|+++|+.||.|.+|++..+.+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 44678999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred chhh
Q 008162 118 RKQE 121 (575)
Q Consensus 118 ~~~~ 121 (575)
....
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6543
No 144
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.8e-16 Score=129.82 Aligned_cols=81 Identities=27% Similarity=0.448 Sum_probs=75.5
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCC--CCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeee
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS--GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~--g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~ 308 (575)
....++|||+|||+++++++|+++|+.|| |.+|+|+.+.. |.++|||||+|.+.++|.+|+ .||+..+.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34568999999999999999999999999 99999998863 899999999999999999999 999999999999999
Q ss_pred hhccH
Q 008162 309 VAQRK 313 (575)
Q Consensus 309 ~a~~~ 313 (575)
++..+
T Consensus 90 ~a~~~ 94 (104)
T 1wi8_A 90 VADQA 94 (104)
T ss_dssp ECCCC
T ss_pred EccCC
Confidence 98765
No 145
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.2e-16 Score=126.58 Aligned_cols=79 Identities=27% Similarity=0.442 Sum_probs=74.4
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
..++|||+|||.++++++|+++|+.||.|.+++|+.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.+.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 46799999999999999999999999999999999885 78999999999999999999999999999999999998764
No 146
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.62 E-value=4.9e-16 Score=130.43 Aligned_cols=82 Identities=22% Similarity=0.386 Sum_probs=76.4
Q ss_pred CCeEEEcCCCC------CcCHHHHHHHHhhcCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCC-eee
Q 008162 40 TGNIFIKNLDK------SIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLIND-KQV 111 (575)
Q Consensus 40 ~~~lfV~nLp~------~ite~~L~~~F~~~G~I~~i~v~~~~-~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g-~~v 111 (575)
.++|||+|||. ++++++|+++|+.||.|.+|+|..|. +|.++|||||+|.+.++|.+|++.|||..+.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 56899999999 99999999999999999999999995 59999999999999999999999999999999 999
Q ss_pred EEeeecchhh
Q 008162 112 FVGHFLRKQE 121 (575)
Q Consensus 112 ~v~~~~~~~~ 121 (575)
.|.++..+..
T Consensus 86 ~V~~a~~~~~ 95 (100)
T 3ns6_A 86 FLYTMKDVER 95 (100)
T ss_dssp EEEESHHHHH
T ss_pred EEEECchhhh
Confidence 9998866443
No 147
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.1e-15 Score=124.93 Aligned_cols=81 Identities=25% Similarity=0.427 Sum_probs=75.0
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
.....++|||+|||.++++++|+++|+.||.|.+|++..+ .++.++|||||+|.+.++|.+|++.||+..+.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3345678999999999999999999999999999999998 458899999999999999999999999999999999998
Q ss_pred ee
Q 008162 115 HF 116 (575)
Q Consensus 115 ~~ 116 (575)
++
T Consensus 92 ~a 93 (94)
T 2e5h_A 92 IA 93 (94)
T ss_dssp EC
T ss_pred ec
Confidence 75
No 148
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.5e-15 Score=126.71 Aligned_cols=86 Identities=31% Similarity=0.526 Sum_probs=78.3
Q ss_pred CCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 35 IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 35 ~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
......++|||+|||.++|+++|+++|+.||.|.+|++..+..+ ++|||||+|.+.++|.+|++.||+..|.|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456789999999999999999999999999999999998655 89999999999999999999999999999999999
Q ss_pred eecchhh
Q 008162 115 HFLRKQE 121 (575)
Q Consensus 115 ~~~~~~~ 121 (575)
+...+..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cq3_A 89 NATARVM 95 (103)
T ss_dssp ECCSSCC
T ss_pred EcccCCC
Confidence 9876543
No 149
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.1e-16 Score=129.34 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=75.1
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~ 118 (575)
..++|||+|||.++|+++|+++|+.||.|.+|.+..|..|.++|||||+|.+.++|.+|++ +++..+.|+.|.|.+...
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 4578999999999999999999999999999999999779999999999999999999998 899999999999987655
Q ss_pred hh
Q 008162 119 KQ 120 (575)
Q Consensus 119 ~~ 120 (575)
..
T Consensus 89 ~~ 90 (103)
T 1s79_A 89 YF 90 (103)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 150
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=128.62 Aligned_cols=85 Identities=29% Similarity=0.577 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
....++|||+|||.++++++|+++|+.||.|.+|++..+ .++.++|||||+|.+.++|.+|++.||+..+.|+.|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345778999999999999999999999999999999998 5788999999999999999999999999999999999999
Q ss_pred ecchhh
Q 008162 116 FLRKQE 121 (575)
Q Consensus 116 ~~~~~~ 121 (575)
...+..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 876543
No 151
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=127.88 Aligned_cols=78 Identities=19% Similarity=0.322 Sum_probs=71.4
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHh--CCceecceeeeee
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM--NGKMIVSKPLYVA 308 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~l--ng~~i~g~~l~V~ 308 (575)
..+.++|||+|||+.+++++|+++|+.||.|.+|.++.+ ||||||+|.+.++|.+|++.| ++..+.|++|+|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 446679999999999999999999999999999998876 899999999999999999977 5778999999999
Q ss_pred hhccH
Q 008162 309 VAQRK 313 (575)
Q Consensus 309 ~a~~~ 313 (575)
+++.+
T Consensus 87 ~a~~~ 91 (101)
T 2cq1_A 87 YSNHK 91 (101)
T ss_dssp ECSCS
T ss_pred EcCcc
Confidence 98854
No 152
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.62 E-value=4.5e-16 Score=125.24 Aligned_cols=73 Identities=22% Similarity=0.352 Sum_probs=68.4
Q ss_pred eeEEEecCCCCC------CHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecce-eeee
Q 008162 235 LNLYIKNLGDSI------DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK-PLYV 307 (575)
Q Consensus 235 ~~l~V~nl~~~~------t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~-~l~V 307 (575)
++|||+|||..+ ++++|+++|++||.|.++++. ..+|.++|||||+|.+.++|.+|++.|||..++|+ .|.|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 589999999999 679999999999999999987 45889999999999999999999999999999999 8887
Q ss_pred e
Q 008162 308 A 308 (575)
Q Consensus 308 ~ 308 (575)
+
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 4
No 153
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=9.5e-16 Score=126.21 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=75.7
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
...++|||+|||+++++++|+++|+.| .|.+++|+.+.+|.++|||||+|.+.++|.+|++ |||..++|+.|.|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 356799999999999999999999999 9999999999999999999999999999999999 99999999999999987
Q ss_pred cH
Q 008162 312 RK 313 (575)
Q Consensus 312 ~~ 313 (575)
.+
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 154
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1e-15 Score=129.08 Aligned_cols=85 Identities=20% Similarity=0.374 Sum_probs=78.5
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
.....++|||+|||.++++++|+++|+.||.|.+|++..+ .++.++|||||+|.+.++|.+|++.||+..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4456789999999999999999999999999999999998 468899999999999999999999999999999999999
Q ss_pred eecchh
Q 008162 115 HFLRKQ 120 (575)
Q Consensus 115 ~~~~~~ 120 (575)
++....
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 887544
No 155
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.62 E-value=4.7e-16 Score=123.08 Aligned_cols=74 Identities=22% Similarity=0.384 Sum_probs=70.5
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 236 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
+|||+|||+++++++|+++|+.||.|.+++++.++ +|.++|||||+|.+.++|.+|++ +||..++|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999886 78999999999999999999998 9999999999999875
No 156
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.62 E-value=3.7e-16 Score=131.16 Aligned_cols=80 Identities=24% Similarity=0.431 Sum_probs=73.5
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC--CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP--SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~--~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
...++|||+||+.++++++|+++|+.|| |.+|+|+.+. +|+++|||||+|.+.++|.+|+ .|||..++|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3567999999999999999999999999 9999999885 7999999999999999999999 8999999999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
+..+
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8754
No 157
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.62 E-value=9.4e-16 Score=132.11 Aligned_cols=103 Identities=25% Similarity=0.372 Sum_probs=91.1
Q ss_pred CCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEccccc
Q 008162 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 209 (575)
Q Consensus 130 ~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~ 209 (575)
..++|||+|||.++++++|+++|+.||.|.++.++.+ +.++|||||+|.+.++|.+|++.||+..+.|+.|.|.++..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 4578999999999999999999999999999999865 55699999999999999999999999999999999999865
Q ss_pred chhHHHHHhhhHHhhhhhccccccceeEEEecCCCCCCHHHHHHHhhhcCC
Q 008162 210 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGT 260 (575)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~ 260 (575)
+... ++++...++++|.++|++||.
T Consensus 85 ~~~~--------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF--------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT--------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh--------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 4321 456677788999999999985
No 158
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.62 E-value=2.6e-15 Score=127.57 Aligned_cols=81 Identities=25% Similarity=0.457 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
....++|||+|||.++|+++|+++|+.||.|.+|++..+.+|.++|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred c
Q 008162 117 L 117 (575)
Q Consensus 117 ~ 117 (575)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 3
No 159
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2e-15 Score=126.36 Aligned_cols=83 Identities=24% Similarity=0.442 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
...++|||+|||.++|+++|+++|+.||.|.+|++..+ .++.++|||||+|.+.++|.+|++ +|+..+.|+.|.|.+.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 45678999999999999999999999999999999998 578899999999999999999998 9999999999999988
Q ss_pred cchhh
Q 008162 117 LRKQE 121 (575)
Q Consensus 117 ~~~~~ 121 (575)
..+..
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 76544
No 160
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.62 E-value=1.3e-15 Score=122.00 Aligned_cols=73 Identities=22% Similarity=0.386 Sum_probs=69.3
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
++..|+|+||+..+|+++|+++|.+||+|.+|++.. ++|||||+|.+.++|++|++.||+..+.|+.|.|..+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 467799999999999999999999999999999976 7999999999999999999999999999999999876
No 161
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-15 Score=128.92 Aligned_cols=81 Identities=20% Similarity=0.309 Sum_probs=74.3
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
....++|||+|||.++|+++|+++|+.||.|.+|+|..+ +.++|||||+|.+.++|.+|++.||+..++|+.|.|.++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 345679999999999999999999999999999999765 558999999999999999999999999999999999998
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
+.+
T Consensus 97 ~~~ 99 (109)
T 1x4a_A 97 RSG 99 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 753
No 162
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.61 E-value=4.3e-16 Score=132.47 Aligned_cols=85 Identities=12% Similarity=0.147 Sum_probs=79.0
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCC---eeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeee
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGT---ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~---v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V 307 (575)
....++|||+|||+++|+++|+++|+.||. |.+|+|+.+..|+++|||||+|.+.++|.+|++ +|+..++|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 345679999999999999999999999998 899999999889999999999999999999999 9999999999999
Q ss_pred ehhccHHHH
Q 008162 308 AVAQRKEER 316 (575)
Q Consensus 308 ~~a~~~~~r 316 (575)
.++..++..
T Consensus 87 ~~a~~~~~~ 95 (107)
T 2lmi_A 87 YEINNEDVD 95 (107)
T ss_dssp EECCHHHHH
T ss_pred EECCHHHHH
Confidence 999877654
No 163
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3e-15 Score=128.68 Aligned_cols=82 Identities=33% Similarity=0.487 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
...++|||+|||.++|+++|+++|+.||.|.+|++..+.++.++|||||+|.+.++|.+|++.||+..+.|+.|.|.+..
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999876
Q ss_pred ch
Q 008162 118 RK 119 (575)
Q Consensus 118 ~~ 119 (575)
..
T Consensus 93 ~~ 94 (114)
T 2do0_A 93 RA 94 (114)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 164
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=1.3e-15 Score=128.43 Aligned_cols=81 Identities=22% Similarity=0.392 Sum_probs=75.2
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
....++|||+|||.++++++|+++|+.|| |.+|+|+.+. +|.++|||||+|.+.++|.+|+ .|||..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34568999999999999999999999997 9999999886 6899999999999999999999 8999999999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
+..+
T Consensus 90 a~~~ 93 (103)
T 2dng_A 90 AEGR 93 (103)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8754
No 165
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.1e-16 Score=132.02 Aligned_cols=78 Identities=18% Similarity=0.356 Sum_probs=71.9
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCC--ceecceeeeee
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG--KMIVSKPLYVA 308 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng--~~i~g~~l~V~ 308 (575)
..++++|||+|||+++|+++|+++|++||.|.+|+|+.+ ||||||+|.+.++|.+|++.+++ ..+.|++|+|.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 345679999999999999999999999999999999986 89999999999999999999874 68999999999
Q ss_pred hhccH
Q 008162 309 VAQRK 313 (575)
Q Consensus 309 ~a~~~ 313 (575)
+++.+
T Consensus 103 ~a~~k 107 (119)
T 2ad9_A 103 FSNHK 107 (119)
T ss_dssp ECSSS
T ss_pred EccCC
Confidence 99765
No 166
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.3e-15 Score=125.97 Aligned_cols=85 Identities=24% Similarity=0.399 Sum_probs=77.4
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
.....++|||+|||.++++++|+++|+.||.|.+|++..+..+ ++|||||+|.+.++|.+|++.||+..+.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 4456789999999999999999999999999999999998544 799999999999999999999999999999999999
Q ss_pred ecchhh
Q 008162 116 FLRKQE 121 (575)
Q Consensus 116 ~~~~~~ 121 (575)
...+..
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 876543
No 167
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.61 E-value=1.5e-15 Score=123.84 Aligned_cols=79 Identities=22% Similarity=0.464 Sum_probs=72.8
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
....++|||+|||.++++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|.+|++ +++..++|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3456799999999999999999999999999999999885 69999999999999999999996 688899999999987
Q ss_pred h
Q 008162 310 A 310 (575)
Q Consensus 310 a 310 (575)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 168
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.61 E-value=1.2e-15 Score=133.65 Aligned_cols=83 Identities=24% Similarity=0.479 Sum_probs=78.0
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
....++|||+|||+++|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4457899999999999999999999999999999999885 889999999999999999999999999999999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
+..+
T Consensus 99 a~~~ 102 (126)
T 3ex7_B 99 CFVR 102 (126)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8754
No 169
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=133.77 Aligned_cols=85 Identities=22% Similarity=0.317 Sum_probs=75.7
Q ss_pred cccceeEEEecCCCCCCHHHHH----HHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeee
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLK----ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~----~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~ 306 (575)
..++++|||+||++.+++++|+ ++|++||.|.+|.+.. +|.++|||||+|.+.++|.+|+..|||..+.|+.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 3456799999999999999876 6999999999988754 578999999999999999999999999999999999
Q ss_pred eehhccHHHHH
Q 008162 307 VAVAQRKEERR 317 (575)
Q Consensus 307 V~~a~~~~~r~ 317 (575)
|.++..+....
T Consensus 104 V~~a~~~~~~~ 114 (127)
T 2a3j_A 104 ITFSETPQSQV 114 (127)
T ss_dssp EEECCCCCHHH
T ss_pred EEEccCcchhc
Confidence 99998765543
No 170
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.3e-15 Score=129.99 Aligned_cols=90 Identities=29% Similarity=0.484 Sum_probs=78.4
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 008162 29 SHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIND 108 (575)
Q Consensus 29 s~~~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g 108 (575)
..+.+.......++|||+|||.++|+++|+++|+.||.|.+|++..+.. .++|||||+|.+.++|.+|++.+||..+.|
T Consensus 18 ~~S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g 96 (109)
T 2err_A 18 GSHMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEG 96 (109)
T ss_dssp ----CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETT
T ss_pred CCCCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3444555666788999999999999999999999999999999998854 489999999999999999999999999999
Q ss_pred eeeEEeeecch
Q 008162 109 KQVFVGHFLRK 119 (575)
Q Consensus 109 ~~v~v~~~~~~ 119 (575)
+.|.|.++..+
T Consensus 97 ~~l~V~~a~~~ 107 (109)
T 2err_A 97 RKIEVNNATAR 107 (109)
T ss_dssp EECEEEECCCS
T ss_pred EEEEEEECCCC
Confidence 99999887643
No 171
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.5e-15 Score=128.47 Aligned_cols=86 Identities=24% Similarity=0.463 Sum_probs=78.9
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhc------CCccCC
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLN------GMLIND 108 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~ln------g~~i~g 108 (575)
.....++|||+|||.++|+++|+++|+.||.|.+|++..+ .++.++|||||+|.+.++|.+|++.+| +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 3446778999999999999999999999999999999998 568899999999999999999999999 999999
Q ss_pred eeeEEeeecchhh
Q 008162 109 KQVFVGHFLRKQE 121 (575)
Q Consensus 109 ~~v~v~~~~~~~~ 121 (575)
+.|.|.+...+..
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999876544
No 172
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=8.8e-16 Score=131.47 Aligned_cols=83 Identities=22% Similarity=0.359 Sum_probs=75.6
Q ss_pred cccceeEEEecCCCCCCHHHHH---HHhhhcCCeeEEEEeeCCC----CCCCceEEEEeCCHHHHHHHHHHhCCceecce
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLK---ELFSEFGTITSCKVMRDPS----GISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~---~~F~~~G~v~~~~i~~~~~----g~skg~afV~f~s~~~A~~A~~~lng~~i~g~ 303 (575)
....++|||+|||+++++++|+ ++|++||.|.+|+|+.+.. +.++|||||+|.+.++|.+|++.|||..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456789999999999999999 9999999999999988752 35679999999999999999999999999999
Q ss_pred eeeeehhccH
Q 008162 304 PLYVAVAQRK 313 (575)
Q Consensus 304 ~l~V~~a~~~ 313 (575)
.|.|.++..+
T Consensus 92 ~l~V~~a~~k 101 (111)
T 2cpi_A 92 TLKASLGTTK 101 (111)
T ss_dssp EEEEESCCCC
T ss_pred EEEEEecccc
Confidence 9999998855
No 173
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.61 E-value=2.1e-15 Score=128.87 Aligned_cols=85 Identities=24% Similarity=0.441 Sum_probs=78.4
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
+....++|||+|||.++|+++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4456788999999999999999999999999999999988 578999999999999999999999999999999999999
Q ss_pred eecchh
Q 008162 115 HFLRKQ 120 (575)
Q Consensus 115 ~~~~~~ 120 (575)
+...+.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 876543
No 174
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.5e-15 Score=127.61 Aligned_cols=86 Identities=22% Similarity=0.504 Sum_probs=79.1
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCC--CCCcccEEEEEeCCHHHHHHHHHHh-cCCccCCeeeE
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG--SGQSKGFGFVQFENKESAQNAIDKL-NGMLINDKQVF 112 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~--~g~skG~afV~F~t~e~A~~Ai~~l-ng~~i~g~~v~ 112 (575)
.....++|||+|||.++|+++|+++|+.||.|.+|++..+. ++.++|||||+|.+.++|.+|++.| |+..+.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 44567899999999999999999999999999999999874 8889999999999999999999999 99999999999
Q ss_pred Eeeecchhh
Q 008162 113 VGHFLRKQE 121 (575)
Q Consensus 113 v~~~~~~~~ 121 (575)
|.+...+..
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999876544
No 175
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=127.53 Aligned_cols=84 Identities=24% Similarity=0.443 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhh-cCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc-cCCeeeEEee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSS-FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGML-INDKQVFVGH 115 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~-~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~-i~g~~v~v~~ 115 (575)
....+|||+|||.++|+++|+++|+. ||.|.+|++..+.+|.++|||||+|.+.++|.+|++.||+.. +.|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45678999999999999999999999 999999999999999999999999999999999999999999 9999999998
Q ss_pred ecchhh
Q 008162 116 FLRKQE 121 (575)
Q Consensus 116 ~~~~~~ 121 (575)
...+..
T Consensus 87 a~~~~~ 92 (104)
T 2dhg_A 87 AIPKAS 92 (104)
T ss_dssp CCCCCS
T ss_pred ccCCCc
Confidence 866544
No 176
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=127.97 Aligned_cols=85 Identities=28% Similarity=0.472 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
....++|||+|||.++|+++|+++|+.||.|.+|++..+ .++.++|||||+|.+.++|.+|++.||+..+.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 345778999999999999999999999999999999998 6788999999999999999999999999999999999998
Q ss_pred ecchhh
Q 008162 116 FLRKQE 121 (575)
Q Consensus 116 ~~~~~~ 121 (575)
...+..
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 177
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.61 E-value=7.3e-16 Score=127.95 Aligned_cols=80 Identities=18% Similarity=0.348 Sum_probs=73.2
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeC-CCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
..++|||+|||+++++++|+++|+.||.|.+++++.+ .+|.++|||||+|.+.++|.+|++.||+..+.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4579999999999999999999999999998887765 478899999999999999999999999999999999999876
Q ss_pred c
Q 008162 312 R 312 (575)
Q Consensus 312 ~ 312 (575)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 178
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=131.08 Aligned_cols=82 Identities=27% Similarity=0.399 Sum_probs=76.1
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
....++|||+|||+++|+++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.+|+ .+.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 4456899999999999999999999999999999999885 689999999999999999999999998 89999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
+..+
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 8643
No 179
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.61 E-value=8.4e-16 Score=134.33 Aligned_cols=78 Identities=21% Similarity=0.391 Sum_probs=73.7
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhcc
Q 008162 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312 (575)
Q Consensus 234 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~ 312 (575)
.++|||+|||.++|+++|+++|+.||.|.+|+|+.++ +|.++|||||+|.+.++|.+|+ .|||..++|+.|.|.+++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 4589999999999999999999999999999999884 8899999999999999999999 7999999999999999863
No 180
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.61 E-value=2e-15 Score=132.82 Aligned_cols=84 Identities=29% Similarity=0.460 Sum_probs=77.8
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
.....++|||+|||.++|+++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++.||+..|.|+.|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456788999999999999999999999999999999998 578899999999999999999999999999999999999
Q ss_pred eecch
Q 008162 115 HFLRK 119 (575)
Q Consensus 115 ~~~~~ 119 (575)
+...+
T Consensus 122 ~a~~~ 126 (129)
T 2kxn_B 122 FSITK 126 (129)
T ss_dssp CCSSS
T ss_pred EecCC
Confidence 87654
No 181
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=136.43 Aligned_cols=83 Identities=34% Similarity=0.512 Sum_probs=77.5
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
....++|||+||+.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456799999999999999999999999999999999885 688999999999999999999999999999999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
+..+
T Consensus 119 a~~~ 122 (139)
T 1u6f_A 119 AASG 122 (139)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8855
No 182
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.61 E-value=3.8e-16 Score=137.95 Aligned_cols=82 Identities=20% Similarity=0.344 Sum_probs=76.5
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeE--EEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCc----eecce
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITS--CKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGK----MIVSK 303 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~--~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~----~i~g~ 303 (575)
....++|||+|||+++|+++|+++|+.||.|.. |+|+.|+ +|++||||||+|.+. +|.+|+..|||. .++|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345679999999999999999999999999977 9999997 899999999999999 999999999999 99999
Q ss_pred eeeeehhccH
Q 008162 304 PLYVAVAQRK 313 (575)
Q Consensus 304 ~l~V~~a~~~ 313 (575)
.|.|.++..+
T Consensus 99 ~l~V~~a~~~ 108 (131)
T 2m2b_A 99 TINVEFAKGS 108 (131)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998764
No 183
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.3e-16 Score=129.70 Aligned_cols=81 Identities=21% Similarity=0.276 Sum_probs=75.4
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeE-EEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITS-CKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~-~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
...++|||+|||+++|+++|+++|+.||.|.+ ++|+.+.+|+++|||||+|.+.++|.+|++. |+..++|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 35679999999999999999999999999998 8888888999999999999999999999997 999999999999987
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
..+
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 754
No 184
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.61 E-value=2.4e-15 Score=124.86 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc--cCCeeeEE
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGML--INDKQVFV 113 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~--i~g~~v~v 113 (575)
...++++|||+|||.++|+++|+++|+.||.|.+|++.+ +||||||+|++.++|.+|++.+++.. +.|+.|+|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 344678899999999999999999999999999999985 58999999999999999999999875 78999999
Q ss_pred eeecch
Q 008162 114 GHFLRK 119 (575)
Q Consensus 114 ~~~~~~ 119 (575)
.++..+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 987654
No 185
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=130.71 Aligned_cols=81 Identities=33% Similarity=0.639 Sum_probs=75.7
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCcee--------cce
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--------VSK 303 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i--------~g~ 303 (575)
...++|||+|||.++++++|+++|+.||.|.+++|+.+.+|.++|||||+|.+.++|.+|++.|||..+ .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 356799999999999999999999999999999999998999999999999999999999999999999 578
Q ss_pred eeeeehhcc
Q 008162 304 PLYVAVAQR 312 (575)
Q Consensus 304 ~l~V~~a~~ 312 (575)
+|.|.++.+
T Consensus 103 ~l~v~~a~p 111 (114)
T 1x5o_A 103 PLLCKFSGP 111 (114)
T ss_dssp CBEEEECCC
T ss_pred ceeEEccCC
Confidence 899998864
No 186
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=136.40 Aligned_cols=83 Identities=22% Similarity=0.366 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcC--CeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFG--NILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G--~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
..++|||+|||.++|+++|+++|+.|| .|.+|+|+.| .+|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 357899999999999999999999999 9999999999 6899999999999999999999999999999999999998
Q ss_pred ecchhh
Q 008162 116 FLRKQE 121 (575)
Q Consensus 116 ~~~~~~ 121 (575)
+..+..
T Consensus 134 a~~~~~ 139 (156)
T 3n9u_C 134 ATRQNL 139 (156)
T ss_dssp CCHHHH
T ss_pred cCCCcc
Confidence 876543
No 187
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.9e-15 Score=126.26 Aligned_cols=84 Identities=36% Similarity=0.568 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCC----CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG----SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~----~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v 113 (575)
...++|||+|||.++|+++|+++|+.||.|.+|++..+. ++.++|||||+|.+.++|.+|++.||+..+.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 356789999999999999999999999999999999874 3378999999999999999999999999999999999
Q ss_pred eeecchhh
Q 008162 114 GHFLRKQE 121 (575)
Q Consensus 114 ~~~~~~~~ 121 (575)
.+...+..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 98876543
No 188
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.60 E-value=3.2e-15 Score=123.27 Aligned_cols=82 Identities=34% Similarity=0.543 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
...++|||+|||.++++++|+++|+.||.|.+|++..+ +|.++|||||+|.+.++|.+|++.||+..+.|+.|.|.+..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45778999999999999999999999999999999985 78899999999999999999999999999999999998876
Q ss_pred chh
Q 008162 118 RKQ 120 (575)
Q Consensus 118 ~~~ 120 (575)
...
T Consensus 85 ~~~ 87 (92)
T 2dgv_A 85 NAS 87 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 189
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2e-15 Score=126.67 Aligned_cols=79 Identities=13% Similarity=0.248 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC--CccCCeeeEEee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG--MLINDKQVFVGH 115 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng--~~i~g~~v~v~~ 115 (575)
....+|||+|||.++|+++|+++|+.||.|.+|+|+++ ||||||+|++.++|.+|++.+++ ..+.|+.|.|.+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 35678999999999999999999999999999999874 89999999999999999998864 789999999999
Q ss_pred ecchhh
Q 008162 116 FLRKQE 121 (575)
Q Consensus 116 ~~~~~~ 121 (575)
+..+..
T Consensus 89 A~~~~~ 94 (105)
T 1sjq_A 89 SNHKEL 94 (105)
T ss_dssp CSSSSC
T ss_pred cCCCCC
Confidence 865443
No 190
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=8.1e-16 Score=133.69 Aligned_cols=85 Identities=18% Similarity=0.272 Sum_probs=78.0
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCe----eEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeee
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTI----TSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v----~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~ 308 (575)
..++|||+|||+++|+++|+++|+.||.| .+|+|+.+.+|+++|||||+|.+.++|.+|++. |+..+.|+.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 46799999999999999999999999975 689999998999999999999999999999985 9999999999999
Q ss_pred hhccHHHHHH
Q 008162 309 VAQRKEERRA 318 (575)
Q Consensus 309 ~a~~~~~r~~ 318 (575)
.+..++.+..
T Consensus 101 ~a~~~e~~~~ 110 (123)
T 2dha_A 101 RSTAAEVQQV 110 (123)
T ss_dssp EECHHHHHHH
T ss_pred ECCHHHHHHH
Confidence 9987776654
No 191
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.60 E-value=3.3e-15 Score=121.80 Aligned_cols=80 Identities=26% Similarity=0.597 Sum_probs=72.5
Q ss_pred CCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 008162 35 IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113 (575)
Q Consensus 35 ~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v 113 (575)
......++|||+|||.++++++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++ +++..++|+.|.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999998 569999999999999999999995 4888899999998
Q ss_pred ee
Q 008162 114 GH 115 (575)
Q Consensus 114 ~~ 115 (575)
.+
T Consensus 85 ~~ 86 (87)
T 3s7r_A 85 KK 86 (87)
T ss_dssp EE
T ss_pred Ee
Confidence 75
No 192
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.60 E-value=2.5e-15 Score=127.40 Aligned_cols=87 Identities=23% Similarity=0.385 Sum_probs=78.6
Q ss_pred CCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCcc---CCee
Q 008162 35 IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLI---NDKQ 110 (575)
Q Consensus 35 ~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i---~g~~ 110 (575)
......++|||+|||.++|+++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++.||+..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 34456788999999999999999999999999999999998 4688999999999999999999999999887 8899
Q ss_pred eEEeeecchhh
Q 008162 111 VFVGHFLRKQE 121 (575)
Q Consensus 111 v~v~~~~~~~~ 121 (575)
|.|.+...+..
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99998876543
No 193
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.60 E-value=1e-15 Score=129.63 Aligned_cols=79 Identities=20% Similarity=0.315 Sum_probs=73.8
Q ss_pred cceeEEEecCCCCC------CHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecce-ee
Q 008162 233 QGLNLYIKNLGDSI------DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK-PL 305 (575)
Q Consensus 233 ~~~~l~V~nl~~~~------t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~-~l 305 (575)
..++|||+|||+.+ |+++|+++|+.||.|.+|+|. ..+|.++|||||+|.+.++|.+|+..|||..+.|+ .|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 46799999999999 789999999999999999988 46889999999999999999999999999999998 99
Q ss_pred eeehhcc
Q 008162 306 YVAVAQR 312 (575)
Q Consensus 306 ~V~~a~~ 312 (575)
.|.++..
T Consensus 93 ~V~~a~~ 99 (105)
T 2nlw_A 93 RVNLFTD 99 (105)
T ss_dssp EEECSCC
T ss_pred EEEEcch
Confidence 9999864
No 194
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=7.8e-16 Score=128.58 Aligned_cols=81 Identities=17% Similarity=0.340 Sum_probs=74.5
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeC-CCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
...++|||+|||+++++++|+++|+.||.|.+++++.+ .+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34578999999999999999999999999998877665 57899999999999999999999999999999999999997
Q ss_pred cc
Q 008162 311 QR 312 (575)
Q Consensus 311 ~~ 312 (575)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 195
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.60 E-value=7.7e-16 Score=136.62 Aligned_cols=113 Identities=19% Similarity=0.335 Sum_probs=81.4
Q ss_pred HHHHHHHHHhCCCccCCeeEEEEeCCCCCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccE
Q 008162 5 SSAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGF 83 (575)
Q Consensus 5 ~dA~~a~~~~n~~~i~g~~iri~~s~~~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~ 83 (575)
.-|.+|++.|+.....|+.-. +...+.......++|||+|||.++|+++|+++|+.||.|.+|++..+ .++.++||
T Consensus 15 ~~~~~a~~~~~g~~~~g~~~~---~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~ 91 (135)
T 2lea_A 15 VPRGSHMASMTGGQQMGRGSM---SYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGF 91 (135)
T ss_dssp --------------------C---CSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSC
T ss_pred CchhhhhhhccCCCCCCCCCC---CcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceE
Confidence 346778888887666665422 22334444556788999999999999999999999999999999988 57889999
Q ss_pred EEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecchh
Q 008162 84 GFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 120 (575)
Q Consensus 84 afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~~ 120 (575)
|||+|.+.++|.+|++.||+..+.|+.|.|.+.....
T Consensus 92 afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 92 AFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp CEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred EEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999999999999999886543
No 196
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=123.89 Aligned_cols=80 Identities=23% Similarity=0.506 Sum_probs=73.5
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCC-CCC-cccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQ-SKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~-~g~-skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
.++|||+|||.++|+++|+++|+.||.|.+|++..+. ++. ++|||||+|.+.++|.+|++.|||..+.|+.|.|.+..
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 5689999999999999999999999999999999884 333 89999999999999999999999999999999999876
Q ss_pred ch
Q 008162 118 RK 119 (575)
Q Consensus 118 ~~ 119 (575)
..
T Consensus 84 ~~ 85 (88)
T 4a8x_A 84 AP 85 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 197
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.8e-15 Score=125.47 Aligned_cols=82 Identities=20% Similarity=0.404 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHHhhcCCee-EEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCee----
Q 008162 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL-SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQ---- 110 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~-~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~---- 110 (575)
...+++|||+|||.++++++|+++|+.||.|. +|++..+ .++.++|||||+|.+.++|.+|++.||+..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34578999999999999999999999999999 9999999 58899999999999999999999999999999999
Q ss_pred eEEeeecc
Q 008162 111 VFVGHFLR 118 (575)
Q Consensus 111 v~v~~~~~ 118 (575)
|.|.++..
T Consensus 86 l~v~~a~~ 93 (99)
T 2div_A 86 FKLNYATY 93 (99)
T ss_dssp CCEEETTC
T ss_pred EEEeecCC
Confidence 88887654
No 198
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.60 E-value=5.1e-16 Score=127.53 Aligned_cols=79 Identities=33% Similarity=0.528 Sum_probs=72.2
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccH
Q 008162 235 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 235 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~ 313 (575)
++|||+|||.++++++|+++|+.||.|.++++..+. +|.++|||||+|.+.+ |.+|+..|||..++|+.|.|.++..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 589999999999999999999999999999999886 6899999999999999 99999999999999999999998865
Q ss_pred H
Q 008162 314 E 314 (575)
Q Consensus 314 ~ 314 (575)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 199
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=129.08 Aligned_cols=82 Identities=24% Similarity=0.433 Sum_probs=76.5
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
....++|||+|||+++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++. |+..+.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 3456799999999999999999999999999999999984 789999999999999999999998 99999999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
+..+
T Consensus 92 a~~~ 95 (105)
T 2dh8_A 92 CTPR 95 (105)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 8755
No 200
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.60 E-value=1.8e-15 Score=129.00 Aligned_cols=78 Identities=22% Similarity=0.219 Sum_probs=71.5
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcC-CeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
..++|||+|||+++++++|+++|+.|| .|..++|..+ .++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 457999999999999999999999999 8999998643 479999999999999999999999999999999999987
Q ss_pred cH
Q 008162 312 RK 313 (575)
Q Consensus 312 ~~ 313 (575)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 201
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9.9e-16 Score=128.97 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=73.3
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
....++|||+|||+++|+++|+++|+.||. .+|+|+.+++|+++|||||+|.+.++|.+|++ +|+..++|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 345679999999999999999999999995 49999999999999999999999999999995 8999999999999986
Q ss_pred cc
Q 008162 311 QR 312 (575)
Q Consensus 311 ~~ 312 (575)
..
T Consensus 90 ~~ 91 (102)
T 1wez_A 90 ST 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 202
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=7.8e-16 Score=122.40 Aligned_cols=75 Identities=35% Similarity=0.578 Sum_probs=71.3
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 235 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 235 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
++|||+|||.++++++|+++|+.||.|.++++..++ +|.++|||||+|.+.++|.+|++.++ ..++|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999885 68999999999999999999999999 9999999999876
No 203
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.59 E-value=2.2e-15 Score=128.47 Aligned_cols=81 Identities=33% Similarity=0.544 Sum_probs=73.3
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
...++|||+|||.++|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.+ +..++|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 356799999999999999999999999999999999886 6899999999999999999999976 59999999999998
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
..+
T Consensus 102 ~~~ 104 (109)
T 2rs2_A 102 FPR 104 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 204
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.5e-15 Score=126.86 Aligned_cols=86 Identities=26% Similarity=0.544 Sum_probs=78.9
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
..++|||+|||.++++++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++.+||..+.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 3568999999999999999999999999999999998 578899999999999999999999999999999999999987
Q ss_pred chhhhhh
Q 008162 118 RKQERET 124 (575)
Q Consensus 118 ~~~~~~~ 124 (575)
.......
T Consensus 87 ~~~~~~~ 93 (104)
T 1p1t_A 87 SEKNKEE 93 (104)
T ss_dssp CTTHHHH
T ss_pred Cccchhh
Confidence 7655443
No 205
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.7e-15 Score=127.80 Aligned_cols=77 Identities=19% Similarity=0.264 Sum_probs=70.2
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCc--eecceeeeeeh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK--MIVSKPLYVAV 309 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~--~i~g~~l~V~~ 309 (575)
.+.++|||+|||+.+++++|+++|++||.|.+|.++.+ ||||||+|.+.++|.+|++.|++. .+.|++|+|.+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 35679999999999999999999999999999998865 899999999999999999988764 58999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
++.+
T Consensus 88 a~~~ 91 (104)
T 1wex_A 88 STSK 91 (104)
T ss_dssp CSSS
T ss_pred ccCc
Confidence 8754
No 206
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.59 E-value=3.6e-15 Score=133.00 Aligned_cols=86 Identities=34% Similarity=0.525 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
....++|||+|||.++|+++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++.||+..+.|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345688999999999999999999999999999999998 5688999999999999999999999999999999999998
Q ss_pred ecchhhh
Q 008162 116 FLRKQER 122 (575)
Q Consensus 116 ~~~~~~~ 122 (575)
+..+..+
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 8765543
No 207
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=9.6e-16 Score=124.45 Aligned_cols=79 Identities=25% Similarity=0.462 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
++.++|||+|||.++++++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++.|||..+.|+.+.+.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45779999999999999999999999999999999998 57889999999999999999999999999999998877654
No 208
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.8e-15 Score=125.13 Aligned_cols=76 Identities=22% Similarity=0.317 Sum_probs=71.2
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
...++|||+|||.++++++|+++|+.||.|.++++.. ++|||||+|.+.++|.+|+..|||..++|+.|.|.+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 3467999999999999999999999999999999983 48999999999999999999999999999999999987
Q ss_pred c
Q 008162 312 R 312 (575)
Q Consensus 312 ~ 312 (575)
.
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 209
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=6.1e-15 Score=121.34 Aligned_cols=81 Identities=15% Similarity=0.270 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
.....+|||+|||.++|+++|+++|+.| .|.+|++..+.+|.++|||||+|.+.++|.+|++ +|+..+.|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3456789999999999999999999999 9999999999889999999999999999999999 9999999999999887
Q ss_pred cch
Q 008162 117 LRK 119 (575)
Q Consensus 117 ~~~ 119 (575)
..+
T Consensus 85 ~~~ 87 (91)
T 2dgw_A 85 KSG 87 (91)
T ss_dssp SSC
T ss_pred CcC
Confidence 654
No 210
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.7e-15 Score=125.95 Aligned_cols=86 Identities=23% Similarity=0.419 Sum_probs=77.8
Q ss_pred CCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCC-C-CCcccEEEEEeCCHHHHHHHHHHhcCCccCCeee
Q 008162 34 SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-S-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111 (575)
Q Consensus 34 ~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~-~-g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v 111 (575)
.......++|||+|||.++|+++|+++|+.|| |.+|+|..+. + |.++|||||+|.+.++|.+|+ .+|+..+.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 34455678999999999999999999999999 9999999984 3 889999999999999999999 999999999999
Q ss_pred EEeeecchhh
Q 008162 112 FVGHFLRKQE 121 (575)
Q Consensus 112 ~v~~~~~~~~ 121 (575)
.|.+...+..
T Consensus 87 ~V~~a~~~~~ 96 (104)
T 1wi8_A 87 RVDVADQAQD 96 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 9998876544
No 211
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.59 E-value=2.8e-15 Score=129.77 Aligned_cols=81 Identities=37% Similarity=0.558 Sum_probs=75.4
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
.....++|||+|||.++++++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456788999999999999999999999999999999988 578899999999999999999999999999999999997
Q ss_pred ee
Q 008162 115 HF 116 (575)
Q Consensus 115 ~~ 116 (575)
+.
T Consensus 116 ~a 117 (118)
T 2khc_A 116 LK 117 (118)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 212
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.59 E-value=7.1e-15 Score=128.41 Aligned_cols=82 Identities=21% Similarity=0.421 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
...++|||+|||.++++++|+++|+.||.|.+|++..+.+|.++|||||+|.+.++|.+|++.+|+..+.|+.|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999876
Q ss_pred ch
Q 008162 118 RK 119 (575)
Q Consensus 118 ~~ 119 (575)
..
T Consensus 113 ~~ 114 (124)
T 2kt5_A 113 SQ 114 (124)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 213
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.59 E-value=4.5e-15 Score=121.50 Aligned_cols=78 Identities=27% Similarity=0.461 Sum_probs=73.6
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~ 118 (575)
.++|||+|||.++|+++|+++|+.||.|.+|++..+ .++.++|||||+|.+.++|.+|+ .+|+..+.|+.|.|.+...
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 468999999999999999999999999999999998 58899999999999999999999 9999999999999988654
No 214
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=126.23 Aligned_cols=80 Identities=29% Similarity=0.419 Sum_probs=73.2
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
....++|||+|||.++|+++|+++|+.||.| +++.+.+|.++|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 3456899999999999999999999999977 6677778999999999999999999999999999999999999998
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
..+
T Consensus 89 ~~~ 91 (101)
T 2fc9_A 89 GPR 91 (101)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
No 215
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.58 E-value=2e-15 Score=119.45 Aligned_cols=73 Identities=25% Similarity=0.464 Sum_probs=69.3
Q ss_pred eEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 42 ~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~-~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
+|||+|||.++++++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++ +|+..+.|+.|.|.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEe
Confidence 59999999999999999999999999999999984 78999999999999999999997 899999999999875
No 216
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.7e-15 Score=129.06 Aligned_cols=85 Identities=21% Similarity=0.253 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHHhhcCCe-eEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNI-LSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I-~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
....++|||+|||.++|+++|+++|+.||.| .+|+|+.|.+|.++|||||+|.+.++|.+||+. |+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 4456889999999999999999999999999 899999999999999999999999999999987 99999999999999
Q ss_pred ecchhhh
Q 008162 116 FLRKQER 122 (575)
Q Consensus 116 ~~~~~~~ 122 (575)
+..+..+
T Consensus 91 a~~~~~~ 97 (114)
T 2cpy_A 91 VTLEDMR 97 (114)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 8766544
No 217
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=6.2e-15 Score=124.32 Aligned_cols=84 Identities=20% Similarity=0.384 Sum_probs=76.6
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
.....++|||+|||.++|+++|+++|+.|| |.+|++..+ .++.++|||||+|.+.++|.+|+ .||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 445678999999999999999999999997 999999999 46889999999999999999999 899999999999999
Q ss_pred eecchhh
Q 008162 115 HFLRKQE 121 (575)
Q Consensus 115 ~~~~~~~ 121 (575)
+...+..
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 8876543
No 218
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4e-15 Score=127.69 Aligned_cols=86 Identities=23% Similarity=0.370 Sum_probs=79.1
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCee--------EEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCcc
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL--------SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLI 106 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~--------~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i 106 (575)
.....++|||+|||.++|+++|+++|+.||.|. .|+|..+ .+|.++|||||+|.+.++|.+|++.||+..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999999 6999998 7899999999999999999999999999999
Q ss_pred CCeeeEEeeecchhh
Q 008162 107 NDKQVFVGHFLRKQE 121 (575)
Q Consensus 107 ~g~~v~v~~~~~~~~ 121 (575)
.|+.|.|.+...+..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999998876544
No 219
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.8e-15 Score=127.77 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=74.3
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCC-eeEEEEe-eCC-CCCCCceEEEEeCCHHHHHHHHHHhC--Cceecceeeee
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGT-ITSCKVM-RDP-SGISKGSGFVAFSTPEEASRALAEMN--GKMIVSKPLYV 307 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~-v~~~~i~-~~~-~g~skg~afV~f~s~~~A~~A~~~ln--g~~i~g~~l~V 307 (575)
..++|||+|||+++|+++|+++|+.||. |.++.++ .+. +|.++|||||+|.+.++|.+|++.|| +..+.|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4679999999999999999999999998 9999988 554 67899999999999999999999996 58999999999
Q ss_pred ehhccH
Q 008162 308 AVAQRK 313 (575)
Q Consensus 308 ~~a~~~ 313 (575)
.++..+
T Consensus 87 ~~a~~~ 92 (109)
T 2dis_A 87 DWAEPE 92 (109)
T ss_dssp EESCSS
T ss_pred EEcCCC
Confidence 998754
No 220
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.9e-15 Score=122.78 Aligned_cols=80 Identities=21% Similarity=0.343 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCcCHHHHH----HHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 008162 38 SGTGNIFIKNLDKSIDHKALH----DTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~----~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v 113 (575)
....+|||+|||.++++++|+ ++|+.||.|.+|++..+..+ +|||||+|.+.++|.+|++.|||..+.|+.|.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345789999999999999999 99999999999999988655 899999999999999999999999999999999
Q ss_pred eeecch
Q 008162 114 GHFLRK 119 (575)
Q Consensus 114 ~~~~~~ 119 (575)
.++...
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 987654
No 221
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=121.77 Aligned_cols=72 Identities=22% Similarity=0.436 Sum_probs=67.3
Q ss_pred CeEEEcCCCCCc------CHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCe-eeEE
Q 008162 41 GNIFIKNLDKSI------DHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDK-QVFV 113 (575)
Q Consensus 41 ~~lfV~nLp~~i------te~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~-~v~v 113 (575)
++|||+|||.++ ++++|+++|+.||.|.+|++. ..+|.++|||||+|.+.++|.+|++.|||..+.|+ .|.|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 789999999999999999988 56888999999999999999999999999999998 7766
No 222
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=5.8e-15 Score=121.21 Aligned_cols=75 Identities=21% Similarity=0.459 Sum_probs=70.5
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
...++|||+|||.++++++|+++|+.||.|.+++++ +|||||+|.+.++|.+|++.||+..++|+.|.|.++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 356799999999999999999999999999999987 6799999999999999999999999999999999987
Q ss_pred cH
Q 008162 312 RK 313 (575)
Q Consensus 312 ~~ 313 (575)
.+
T Consensus 79 ~~ 80 (90)
T 2dnq_A 79 NK 80 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 223
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.7e-15 Score=120.30 Aligned_cols=76 Identities=26% Similarity=0.447 Sum_probs=70.9
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHh-CCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM-NGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~l-ng~~i~g~~l~V~~ 309 (575)
....++|||+|||.++++++|+++|+.||.|.++++..+ +|||||+|.+.++|.+|++.| ||..+.|+.|.|.+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 345679999999999999999999999999999999875 899999999999999999999 99999999999998
Q ss_pred hc
Q 008162 310 AQ 311 (575)
Q Consensus 310 a~ 311 (575)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 224
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.1e-15 Score=129.11 Aligned_cols=80 Identities=34% Similarity=0.510 Sum_probs=75.0
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
..++|||+|||+++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++. |+..++|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 34689999999999999999999999999999999885 689999999999999999999997 9999999999999987
Q ss_pred cH
Q 008162 312 RK 313 (575)
Q Consensus 312 ~~ 313 (575)
.+
T Consensus 105 ~~ 106 (116)
T 1x4b_A 105 AR 106 (116)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 225
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.6e-15 Score=126.99 Aligned_cols=83 Identities=25% Similarity=0.464 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
.....++|||+|||.++|+++|+++|+.||.|.+|+|..+ .++.++|||||+|.+.++|.+|++.+++ .+.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 4456789999999999999999999999999999999998 5789999999999999999999999998 8999999999
Q ss_pred eecch
Q 008162 115 HFLRK 119 (575)
Q Consensus 115 ~~~~~ 119 (575)
+....
T Consensus 92 ~a~~~ 96 (116)
T 2cqd_A 92 LAYLG 96 (116)
T ss_dssp ESTTT
T ss_pred EcccC
Confidence 88654
No 226
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.2e-15 Score=124.29 Aligned_cols=81 Identities=28% Similarity=0.395 Sum_probs=74.6
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
....++|||+|||+++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+. ++..++|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3456789999999999999999999999999999999985 69999999999999999999998 57899999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
+..+
T Consensus 90 a~~~ 93 (103)
T 2cqg_A 90 PNSK 93 (103)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 8765
No 227
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.58 E-value=5.4e-15 Score=134.64 Aligned_cols=81 Identities=23% Similarity=0.300 Sum_probs=76.6
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
...++|||+|||.++|+++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356799999999999999999999999999999999886 6889999999999999999999999999999999999998
Q ss_pred cc
Q 008162 311 QR 312 (575)
Q Consensus 311 ~~ 312 (575)
..
T Consensus 117 ~~ 118 (156)
T 1h2v_Z 117 AG 118 (156)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 228
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.7e-15 Score=125.94 Aligned_cols=78 Identities=27% Similarity=0.466 Sum_probs=73.3
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
....++|||+|||..+++++|+++|+.||.|.+|+|+.+ +|||||+|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 345679999999999999999999999999999999987 899999999999999999999999999999999998
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
..+
T Consensus 97 ~~~ 99 (109)
T 1x4g_A 97 KES 99 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 229
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-15 Score=129.99 Aligned_cols=78 Identities=21% Similarity=0.283 Sum_probs=70.3
Q ss_pred cccceeEEEecCCCC-CCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhC--Cceecceeeee
Q 008162 231 KFQGLNLYIKNLGDS-IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN--GKMIVSKPLYV 307 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~-~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~ln--g~~i~g~~l~V 307 (575)
...+++|||+|||++ +++++|+++|++||.|.+|+|++. ||||||+|.+.++|.+|++.|| +..+.|++|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345789999999998 999999999999999999999754 8999999999999999999886 45689999999
Q ss_pred ehhccH
Q 008162 308 AVAQRK 313 (575)
Q Consensus 308 ~~a~~~ 313 (575)
.+++.+
T Consensus 97 ~~a~~~ 102 (112)
T 1x4f_A 97 DLSEKY 102 (112)
T ss_dssp EEECSC
T ss_pred EECccc
Confidence 998754
No 230
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4.4e-15 Score=123.76 Aligned_cols=77 Identities=21% Similarity=0.340 Sum_probs=71.9
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceec--ceeeeeeh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV--SKPLYVAV 309 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~--g~~l~V~~ 309 (575)
...++|||+|||.++|+++|+++|+.||.|.++++..+ +|||||+|.+.++|.+|++.|||..+. |+.|.|.+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 34578999999999999999999999999999999865 889999999999999999999999999 99999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
+..+
T Consensus 90 a~~~ 93 (97)
T 1why_A 90 AKSG 93 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 231
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.58 E-value=1.5e-15 Score=126.59 Aligned_cols=83 Identities=33% Similarity=0.503 Sum_probs=75.7
Q ss_pred ccceeEEEecCCCCCCHHHHH----HHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeee
Q 008162 232 FQGLNLYIKNLGDSIDDEKLK----ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~----~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V 307 (575)
..+++|||+|||.++++++|+ ++|+.||.|.++++.. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 356799999999999999999 9999999999999874 4678999999999999999999999999999999999
Q ss_pred ehhccHHHH
Q 008162 308 AVAQRKEER 316 (575)
Q Consensus 308 ~~a~~~~~r 316 (575)
.++..+...
T Consensus 84 ~~a~~~~~~ 92 (97)
T 1nu4_A 84 QYAKTDSDI 92 (97)
T ss_dssp EECSSCCTH
T ss_pred EEccCCCcc
Confidence 999876443
No 232
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.58 E-value=4.1e-15 Score=126.59 Aligned_cols=79 Identities=25% Similarity=0.567 Sum_probs=72.3
Q ss_pred ccccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 230 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 230 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
.....++|||+|||.++|+++|+++|+.||.|.++++. +|||||+|.+.++|.+|++.|||..++|+.|.|.+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34567899999999999999999999999999999987 78999999999999999999999999999999999
Q ss_pred hccHHH
Q 008162 310 AQRKEE 315 (575)
Q Consensus 310 a~~~~~ 315 (575)
++.+..
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 986543
No 233
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.58 E-value=2.3e-15 Score=124.91 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
.+.++|||+|||.++|+++|+++|+.||.|.+|+++.+ .++.++|||||+|.+.++|.+|++.||+..+.|+.|.|..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34678999999999999999999999999998888876 67889999999999999999999999999999999999875
Q ss_pred c
Q 008162 117 L 117 (575)
Q Consensus 117 ~ 117 (575)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 234
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=5e-15 Score=125.34 Aligned_cols=84 Identities=24% Similarity=0.501 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
....++|||+|||.++++++|+++|+.||.|.+|++..+ .++.++|||||+|.+.++|.+|++. |+..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 345788999999999999999999999999999999999 6789999999999999999999998 99999999999998
Q ss_pred ecchhh
Q 008162 116 FLRKQE 121 (575)
Q Consensus 116 ~~~~~~ 121 (575)
...+..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 876554
No 235
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.4e-15 Score=133.01 Aligned_cols=84 Identities=19% Similarity=0.364 Sum_probs=76.4
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEE-EEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC-KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~-~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
...++|||+|||+++|+++|+++|+.||.|.++ .+..+.+|.++|||||+|.+.++|.+|++ |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 356799999999999999999999999999984 55566789999999999999999999999 9999999999999999
Q ss_pred ccHHHH
Q 008162 311 QRKEER 316 (575)
Q Consensus 311 ~~~~~r 316 (575)
..++..
T Consensus 102 ~~~~~~ 107 (124)
T 1wel_A 102 TKKGML 107 (124)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 987654
No 236
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.57 E-value=4.8e-15 Score=128.30 Aligned_cols=82 Identities=13% Similarity=0.163 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCC---eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGN---ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~---I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
....+|||+|||+++|+++|+++|+.||. |.+|+|..+..|.++|||||+|.+.++|.+||+ +|+..|.|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45678999999999999999999999998 899999999789999999999999999999998 89999999999998
Q ss_pred eecchh
Q 008162 115 HFLRKQ 120 (575)
Q Consensus 115 ~~~~~~ 120 (575)
.+..+.
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 886544
No 237
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.57 E-value=4.4e-15 Score=126.63 Aligned_cols=84 Identities=21% Similarity=0.418 Sum_probs=73.3
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
.....++|||+|||.++|+++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++.+ +..++|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456778999999999999999999999999999999998 46899999999999999999999876 589999999999
Q ss_pred eecchh
Q 008162 115 HFLRKQ 120 (575)
Q Consensus 115 ~~~~~~ 120 (575)
+...+.
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 876544
No 238
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=5.9e-15 Score=125.63 Aligned_cols=75 Identities=24% Similarity=0.325 Sum_probs=71.1
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecc-----eeeee
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS-----KPLYV 307 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g-----~~l~V 307 (575)
..++|||+|||+++|+++|+++|+.||.|.+|+|+.+ |||||+|.+.++|.+|++.|||..+.| +.|.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 4679999999999999999999999999999999876 799999999999999999999999999 99999
Q ss_pred ehhccH
Q 008162 308 AVAQRK 313 (575)
Q Consensus 308 ~~a~~~ 313 (575)
.++.++
T Consensus 88 ~~a~~~ 93 (108)
T 1x4c_A 88 KVDGPR 93 (108)
T ss_dssp EESSCC
T ss_pred EeCCCC
Confidence 998863
No 239
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=3.6e-15 Score=124.49 Aligned_cols=82 Identities=22% Similarity=0.246 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
....++|||+|||.++++++|+++|+.||.|.+|+++.+ .+|.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345678999999999999999999999999988877776 6888999999999999999999999999999999999988
Q ss_pred ecc
Q 008162 116 FLR 118 (575)
Q Consensus 116 ~~~ 118 (575)
...
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 654
No 240
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.57 E-value=4e-15 Score=126.01 Aligned_cols=84 Identities=20% Similarity=0.363 Sum_probs=75.7
Q ss_pred CCCCCCCCeEEEcCCCCCc------CHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccC
Q 008162 34 SIRKSGTGNIFIKNLDKSI------DHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 107 (575)
Q Consensus 34 ~~r~~~~~~lfV~nLp~~i------te~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~ 107 (575)
.......++|||+|||.++ ++++|+++|+.||.|.+|++. ..+|.++|||||+|.+.++|.+|++.|||..+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 9 QEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp CSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 3344557899999999999 789999999999999999988 568899999999999999999999999999999
Q ss_pred Ce-eeEEeeecc
Q 008162 108 DK-QVFVGHFLR 118 (575)
Q Consensus 108 g~-~v~v~~~~~ 118 (575)
|+ .|.|.++..
T Consensus 88 g~~~l~V~~a~~ 99 (105)
T 2nlw_A 88 KQHTFRVNLFTD 99 (105)
T ss_dssp TTCEEEEECSCC
T ss_pred CCceEEEEEcch
Confidence 98 999988754
No 241
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.7e-15 Score=124.84 Aligned_cols=82 Identities=22% Similarity=0.303 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeE-EEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS-CKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~-i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
.....+|||+|||+++|+++|+++|+.||.|.+ |.|..+.+|.++|||||+|.+.++|.+||+. ++..+.|+.|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 345678999999999999999999999999987 8888888999999999999999999999987 99999999999988
Q ss_pred ecch
Q 008162 116 FLRK 119 (575)
Q Consensus 116 ~~~~ 119 (575)
....
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 7543
No 242
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=4.8e-15 Score=126.84 Aligned_cols=88 Identities=19% Similarity=0.305 Sum_probs=78.3
Q ss_pred CCCCCCCCCeEEEcCCCCCcCHHHHH---HHHhhcCCeeEEEEeeCC----CCCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 008162 33 PSIRKSGTGNIFIKNLDKSIDHKALH---DTFSSFGNILSCKIATDG----SGQSKGFGFVQFENKESAQNAIDKLNGML 105 (575)
Q Consensus 33 ~~~r~~~~~~lfV~nLp~~ite~~L~---~~F~~~G~I~~i~v~~~~----~g~skG~afV~F~t~e~A~~Ai~~lng~~ 105 (575)
+..|....++|||+|||.++++++|+ ++|+.||.|.+|++..+. .+.++|||||+|++.++|.+|++.||+..
T Consensus 8 ~~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 87 (111)
T 2cpi_A 8 ASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV 87 (111)
T ss_dssp SCCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred ccccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE
Confidence 34566667899999999999999999 999999999999999884 23567999999999999999999999999
Q ss_pred cCCeeeEEeeecchh
Q 008162 106 INDKQVFVGHFLRKQ 120 (575)
Q Consensus 106 i~g~~v~v~~~~~~~ 120 (575)
+.|+.|.|.+...+.
T Consensus 88 ~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 88 VDGRTLKASLGTTKY 102 (111)
T ss_dssp ETTEEEEEESCCCCS
T ss_pred ECCEEEEEEeccccc
Confidence 999999999887654
No 243
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.57 E-value=6.4e-15 Score=131.39 Aligned_cols=79 Identities=29% Similarity=0.484 Sum_probs=74.1
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeC-CCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
...++|||+|||..+++++|+++|+.||.|.+++|+.+ .+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35679999999999999999999999999999999988 47899999999999999999999999999999999999875
No 244
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.57 E-value=3.6e-15 Score=132.02 Aligned_cols=82 Identities=12% Similarity=0.128 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCC---eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGN---ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~---I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
....+|||+|||+++|+++|+++|+.||. |.+|+|+.|..|.++|||||+|.+.++|.+||+ +|+..+.|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 34678999999999999999999999999 899999999779999999999999999999998 99999999999998
Q ss_pred eecchh
Q 008162 115 HFLRKQ 120 (575)
Q Consensus 115 ~~~~~~ 120 (575)
.+..+.
T Consensus 121 ~a~~~e 126 (136)
T 2hgl_A 121 KSHRTE 126 (136)
T ss_dssp ECCHHH
T ss_pred ECChHH
Confidence 876543
No 245
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.57 E-value=1.8e-15 Score=126.97 Aligned_cols=85 Identities=21% Similarity=0.401 Sum_probs=72.8
Q ss_pred CCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCC--CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCee
Q 008162 33 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG--SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQ 110 (575)
Q Consensus 33 ~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~--~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~ 110 (575)
+.......++|||+|||.++++++|+++|+.|| |.+|++..+. +|.++|||||+|.+.++|.+|+ .+||..+.|+.
T Consensus 12 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~ 89 (100)
T 2j76_E 12 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRR 89 (100)
T ss_dssp --------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBC
T ss_pred CcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeE
Confidence 334455678999999999999999999999999 9999999985 7899999999999999999999 89999999999
Q ss_pred eEEeeecch
Q 008162 111 VFVGHFLRK 119 (575)
Q Consensus 111 v~v~~~~~~ 119 (575)
|.|.+...+
T Consensus 90 l~V~~a~~~ 98 (100)
T 2j76_E 90 IRVDVADQA 98 (100)
T ss_dssp CCCEECCCS
T ss_pred EEEEeccCC
Confidence 999887654
No 246
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.4e-14 Score=123.42 Aligned_cols=82 Identities=22% Similarity=0.356 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
....++|||+|||.++|+++|+++|+.||.|.+|++..+ +.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 345789999999999999999999999999999999664 558999999999999999999999999999999999988
Q ss_pred cchh
Q 008162 117 LRKQ 120 (575)
Q Consensus 117 ~~~~ 120 (575)
....
T Consensus 97 ~~~~ 100 (109)
T 1x4a_A 97 RSGR 100 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 6544
No 247
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=2.9e-15 Score=125.86 Aligned_cols=75 Identities=27% Similarity=0.553 Sum_probs=71.6
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccH
Q 008162 235 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 235 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~ 313 (575)
++|||+|||.++|+++|+++|+.||.|.++++..+ ++|||||+|.+.++|.+|++.|||..+.|+.|.|.++..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999887 7999999999999999999999999999999999998764
No 248
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.6e-15 Score=124.87 Aligned_cols=82 Identities=15% Similarity=0.170 Sum_probs=73.8
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
......+|||+|||+++|+++|+++|+.||. .+|+|+.|.+|.++|||||+|++.++|.+||+ +|+..+.|+.|.|..
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3445678999999999999999999999995 49999999999999999999999999999994 799999999999987
Q ss_pred ecch
Q 008162 116 FLRK 119 (575)
Q Consensus 116 ~~~~ 119 (575)
....
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 6543
No 249
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=3.9e-15 Score=124.58 Aligned_cols=77 Identities=29% Similarity=0.439 Sum_probs=72.0
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
...++|||+|||..+++++|+++|+.||.|.++++..+ +|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 35679999999999999999999999999999999865 8999999999999999999999999999999999987
Q ss_pred cH
Q 008162 312 RK 313 (575)
Q Consensus 312 ~~ 313 (575)
.+
T Consensus 88 ~~ 89 (99)
T 2cpj_A 88 HS 89 (99)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 250
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=5e-15 Score=124.08 Aligned_cols=80 Identities=21% Similarity=0.211 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCC-CcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCC--ccCCeeeE
Q 008162 36 RKSGTGNIFIKNLDK-SIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGM--LINDKQVF 112 (575)
Q Consensus 36 r~~~~~~lfV~nLp~-~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~--~i~g~~v~ 112 (575)
+...+++|||+|||. ++|+++|+++|+.||.|.+|+|++ .+|||||+|++.++|.+|++.||+. .+.|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN-----KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS-----SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 344678999999999 999999999999999999999986 3689999999999999999998864 59999999
Q ss_pred Eeeecchh
Q 008162 113 VGHFLRKQ 120 (575)
Q Consensus 113 v~~~~~~~ 120 (575)
|.++....
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99987543
No 251
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=5.3e-15 Score=126.57 Aligned_cols=75 Identities=24% Similarity=0.313 Sum_probs=70.5
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhcc
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~ 312 (575)
..++|||+|||+.+++++|+++|++||.|.+|.|.. ++|||||+|.+.++|.+|++.|||..+.|+.|.|.|+..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 357999999999999999999999999999999875 489999999999999999999999999999999999874
No 252
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.56 E-value=6.7e-15 Score=128.91 Aligned_cols=85 Identities=24% Similarity=0.450 Sum_probs=78.2
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
.....++|||+|||.++|+++|+++|+.||.|.+|+|..+ .++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3445778999999999999999999999999999999998 588899999999999999999999999999999999999
Q ss_pred eecchh
Q 008162 115 HFLRKQ 120 (575)
Q Consensus 115 ~~~~~~ 120 (575)
++..+.
T Consensus 98 ~a~~~~ 103 (126)
T 3ex7_B 98 WCFVRG 103 (126)
T ss_dssp ESEESS
T ss_pred EecCCC
Confidence 886544
No 253
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.56 E-value=3.2e-15 Score=130.23 Aligned_cols=82 Identities=23% Similarity=0.302 Sum_probs=74.6
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCee--EEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTIT--SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~--~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
...++|||+|||+++|+++|+++|+.| .|. +|+|+.|++|+++|||||+|.+.++|.+|++ +++..|+|+.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 346789999999999999999999999 676 8999999889999999999999999999998 578999999999999
Q ss_pred hccHHH
Q 008162 310 AQRKEE 315 (575)
Q Consensus 310 a~~~~~ 315 (575)
+.+++.
T Consensus 118 a~~~e~ 123 (126)
T 2hgm_A 118 SSQEEV 123 (126)
T ss_dssp ECHHHH
T ss_pred CCHHHh
Confidence 876653
No 254
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=4.9e-15 Score=126.01 Aligned_cols=80 Identities=21% Similarity=0.300 Sum_probs=73.8
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~ 118 (575)
...+|||+|||+++|+++|+++|+.| .|.+|.|+.|..|.++|||||+|.+.++|.+|| .+|+..+.|+.|.|.....
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 45689999999999999999999999 899999999988999999999999999999999 6899999999999987765
Q ss_pred hh
Q 008162 119 KQ 120 (575)
Q Consensus 119 ~~ 120 (575)
+.
T Consensus 93 ~~ 94 (109)
T 2dnn_A 93 RQ 94 (109)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 255
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1e-14 Score=125.44 Aligned_cols=80 Identities=13% Similarity=0.250 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC--CccCCeeeEE
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG--MLINDKQVFV 113 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng--~~i~g~~v~v 113 (575)
....+++|||+|||.++|+++|+++|+.||.|.+|+|+. .||||||+|++.++|.+|++.+++ ..+.|+.|.|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~-----~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-----GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG-----GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 344678899999999999999999999999999999987 389999999999999999998874 6899999999
Q ss_pred eeecchh
Q 008162 114 GHFLRKQ 120 (575)
Q Consensus 114 ~~~~~~~ 120 (575)
.++..+.
T Consensus 102 ~~a~~k~ 108 (119)
T 2ad9_A 102 QFSNHKE 108 (119)
T ss_dssp EECSSSS
T ss_pred EEccCCC
Confidence 9986544
No 256
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.3e-15 Score=126.44 Aligned_cols=77 Identities=22% Similarity=0.439 Sum_probs=69.4
Q ss_pred cccceeEEE--ecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCcee-----cce
Q 008162 231 KFQGLNLYI--KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-----VSK 303 (575)
Q Consensus 231 ~~~~~~l~V--~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i-----~g~ 303 (575)
..+..+||| +||++++++++|+++|++||.|.+|.|..+ ||||||+|.+.++|.+|++.|||+.+ .|+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 345678999 669999999999999999999999988653 89999999999999999999999998 689
Q ss_pred eeeeehhcc
Q 008162 304 PLYVAVAQR 312 (575)
Q Consensus 304 ~l~V~~a~~ 312 (575)
+|+|.++..
T Consensus 97 ~l~v~~a~~ 105 (114)
T 2cq2_A 97 TLYLNFVEK 105 (114)
T ss_dssp ECEEEEESC
T ss_pred EEEEEeccc
Confidence 999999763
No 257
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.56 E-value=2.7e-15 Score=132.42 Aligned_cols=84 Identities=17% Similarity=0.359 Sum_probs=77.2
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeE--EEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCC----ccCC
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS--CKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGM----LIND 108 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~--i~v~~~~-~g~skG~afV~F~t~e~A~~Ai~~lng~----~i~g 108 (575)
.....++|||+|||.++|+++|+++|+.||.|.+ |+|+.|. +|.++|||||+|.+. +|.+|++.||+. .+.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999977 9999995 899999999999999 999999999999 9999
Q ss_pred eeeEEeeecchh
Q 008162 109 KQVFVGHFLRKQ 120 (575)
Q Consensus 109 ~~v~v~~~~~~~ 120 (575)
+.|.|.+.....
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999886643
No 258
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.56 E-value=1.1e-14 Score=121.35 Aligned_cols=76 Identities=25% Similarity=0.441 Sum_probs=70.5
Q ss_pred cccceeEEEecCCC-CCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGD-SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
....++|||+||++ ++++++|+++|+.||.|.++++. +|||||+|.+.++|.+|++.|||..++|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34578999999998 99999999999999999999983 78999999999999999999999999999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
++.+
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8753
No 259
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.8e-15 Score=127.46 Aligned_cols=83 Identities=28% Similarity=0.419 Sum_probs=76.4
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~-~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
..++|||+|||.++++++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|+ .+|+..|.|+.|.|.+..
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 45689999999999999999999999999999999984 5889999999999999999999 999999999999999887
Q ss_pred chhhh
Q 008162 118 RKQER 122 (575)
Q Consensus 118 ~~~~~ 122 (575)
.+..+
T Consensus 103 ~~~~~ 107 (114)
T 2cq4_A 103 AEKNR 107 (114)
T ss_dssp HHHHH
T ss_pred CCccC
Confidence 65543
No 260
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.56 E-value=1.7e-14 Score=131.35 Aligned_cols=83 Identities=20% Similarity=0.328 Sum_probs=77.5
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
...++|||+|||.++|+++|+++|+.||.|.+|+|..+ .++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999 46889999999999999999999999999999999999998
Q ss_pred cchh
Q 008162 117 LRKQ 120 (575)
Q Consensus 117 ~~~~ 120 (575)
....
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7543
No 261
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=3.4e-15 Score=118.65 Aligned_cols=75 Identities=23% Similarity=0.456 Sum_probs=70.5
Q ss_pred CeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 41 ~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
++|||+|||.++++++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++.++ ..++|+.+.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999999998 468899999999999999999999999 9999999998764
No 262
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.6e-14 Score=120.42 Aligned_cols=83 Identities=27% Similarity=0.450 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
....++|||+|||.++++++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++ ++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 345678999999999999999999999999999999999 569999999999999999999998 47789999999998
Q ss_pred ecchhh
Q 008162 116 FLRKQE 121 (575)
Q Consensus 116 ~~~~~~ 121 (575)
...+..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 876543
No 263
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.56 E-value=2.4e-15 Score=118.93 Aligned_cols=74 Identities=20% Similarity=0.380 Sum_probs=69.4
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 236 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
+|||+|||.++++++|+++|+.||.|.++++..+. +|.++|||||+|.+.++|.+|++ +++..+.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999998885 68999999999999999999998 5999999999999875
No 264
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.55 E-value=9.8e-15 Score=124.67 Aligned_cols=94 Identities=23% Similarity=0.424 Sum_probs=80.4
Q ss_pred cCCeeEEEEeCCCCCCC-CCCCCCeEEEcCCCCC-cCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHH
Q 008162 19 LNNKSIRIMYSHRDPSI-RKSGTGNIFIKNLDKS-IDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQN 96 (575)
Q Consensus 19 i~g~~iri~~s~~~~~~-r~~~~~~lfV~nLp~~-ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~ 96 (575)
..|.++++..+...... .....++|||+|||.+ +|+++|+++|+.||.|.+|++ ++|||||+|.+.++|.+
T Consensus 5 ~~g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~ 77 (110)
T 1wf1_A 5 SSGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARA 77 (110)
T ss_dssp CCSCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHH
T ss_pred CCCcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHH
Confidence 45777877765433222 3345689999999999 999999999999999999998 68999999999999999
Q ss_pred HHHHhcCCccCCeeeEEeeecch
Q 008162 97 AIDKLNGMLINDKQVFVGHFLRK 119 (575)
Q Consensus 97 Ai~~lng~~i~g~~v~v~~~~~~ 119 (575)
|++.||+..+.|+.|.|.+....
T Consensus 78 A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 78 AVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp HHHHHTTCEETTEECCEEESCCC
T ss_pred HHHHcCCCEECCeEEEEEECCCC
Confidence 99999999999999999988643
No 265
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.9e-14 Score=120.59 Aligned_cols=79 Identities=11% Similarity=0.213 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh--cCCccCCeeeEEe
Q 008162 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL--NGMLINDKQVFVG 114 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~l--ng~~i~g~~v~v~ 114 (575)
...+++|||+|||.++|+++|+++|+.||.|.+|++..+ +|||||+|++.++|.+|++.+ ++..+.|+.|.|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 346789999999999999999999999999999988863 899999999999999999977 4678999999999
Q ss_pred eecchh
Q 008162 115 HFLRKQ 120 (575)
Q Consensus 115 ~~~~~~ 120 (575)
++..+.
T Consensus 87 ~a~~~~ 92 (101)
T 2cq1_A 87 YSNHKE 92 (101)
T ss_dssp ECSCSS
T ss_pred EcCccc
Confidence 987544
No 266
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.1e-14 Score=123.40 Aligned_cols=80 Identities=30% Similarity=0.571 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCcc--------CCe
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI--------NDK 109 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i--------~g~ 109 (575)
...++|||+|||.++|+++|+++|+.||.|.+|++..+.+|.++|||||+|.+.++|.+|++.|||..+ .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 456889999999999999999999999999999999998899999999999999999999999999998 456
Q ss_pred eeEEeeec
Q 008162 110 QVFVGHFL 117 (575)
Q Consensus 110 ~v~v~~~~ 117 (575)
.+.|.+..
T Consensus 103 ~l~v~~a~ 110 (114)
T 1x5o_A 103 PLLCKFSG 110 (114)
T ss_dssp CBEEEECC
T ss_pred ceeEEccC
Confidence 67766654
No 267
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.55 E-value=8.2e-15 Score=136.13 Aligned_cols=82 Identities=29% Similarity=0.482 Sum_probs=78.0
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
..+++|||+||++.+++++|+++|+.||.|.+|+|..+.+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 45789999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred cH
Q 008162 312 RK 313 (575)
Q Consensus 312 ~~ 313 (575)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 54
No 268
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.55 E-value=4e-15 Score=125.24 Aligned_cols=81 Identities=22% Similarity=0.496 Sum_probs=75.9
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
...++|||+|||+++++++|+++|+.||.|.+++|+.+.+|.++|||||+|.+.++|.+|+. ++..++|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 34579999999999999999999999999999999999899999999999999999999998 9999999999999987
Q ss_pred cHH
Q 008162 312 RKE 314 (575)
Q Consensus 312 ~~~ 314 (575)
++.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 653
No 269
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=6.9e-15 Score=127.79 Aligned_cols=82 Identities=20% Similarity=0.185 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCe----eEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNI----LSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I----~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v 113 (575)
....+|||+|||+++|+++|+++|+.||.| .+|.|+.|.+|.++|||||+|.+.++|.+||+. |+..+.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 346789999999999999999999999975 689999998999999999999999999999986 999999999998
Q ss_pred eeecchh
Q 008162 114 GHFLRKQ 120 (575)
Q Consensus 114 ~~~~~~~ 120 (575)
.....+.
T Consensus 100 ~~a~~~e 106 (123)
T 2dha_A 100 FRSTAAE 106 (123)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 8776543
No 270
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.1e-14 Score=117.89 Aligned_cols=77 Identities=30% Similarity=0.572 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
...++|||+|||.++|+++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.+|+..+.|+.|.|.+..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 457789999999999999999999999999999987 6899999999999999999999999999999999987
Q ss_pred chhh
Q 008162 118 RKQE 121 (575)
Q Consensus 118 ~~~~ 121 (575)
.+..
T Consensus 79 ~~~~ 82 (90)
T 2dnq_A 79 NKSK 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6544
No 271
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=8e-15 Score=122.21 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=71.0
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
...++|||+|||+++++++|+++|+.||.|. ++++.+ .++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3467999999999999999999999999997 666654 679999999999999999999999999999999999987
Q ss_pred cH
Q 008162 312 RK 313 (575)
Q Consensus 312 ~~ 313 (575)
.+
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 272
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.55 E-value=2.7e-15 Score=123.20 Aligned_cols=79 Identities=29% Similarity=0.500 Sum_probs=71.8
Q ss_pred CeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecch
Q 008162 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 119 (575)
Q Consensus 41 ~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~ 119 (575)
++|||+|||.++++++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.+ |.+|++.+||..+.|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999998 46889999999999999 99999999999999999999987654
Q ss_pred h
Q 008162 120 Q 120 (575)
Q Consensus 120 ~ 120 (575)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 273
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.55 E-value=1.8e-15 Score=134.43 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=73.9
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhcc
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~ 312 (575)
..++|||+|||+++|+++|+++|+.|| |.+|+|+.+++|+++|||||+|.+.++|.+|+ .+|+..+.|+.|.|..+..
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNST 122 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCC
Confidence 457899999999999999999999999 77999999988999999999999999999999 7999999999999998775
Q ss_pred H
Q 008162 313 K 313 (575)
Q Consensus 313 ~ 313 (575)
+
T Consensus 123 ~ 123 (139)
T 2hgn_A 123 T 123 (139)
T ss_dssp S
T ss_pred C
Confidence 4
No 274
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.5e-14 Score=119.22 Aligned_cols=76 Identities=18% Similarity=0.427 Sum_probs=70.4
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
....++|||+|||.++++++|+++|+.||.|.++++++ +||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34568999999999999999999999999999999974 49999999999999999999999999999999998
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
..+
T Consensus 80 ~~~ 82 (92)
T 2dgt_A 80 TSR 82 (92)
T ss_dssp SCC
T ss_pred cCC
Confidence 754
No 275
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=126.71 Aligned_cols=85 Identities=20% Similarity=0.333 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCcCHHHHH----HHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 008162 38 SGTGNIFIKNLDKSIDHKALH----DTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~----~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v 113 (575)
...++|||+|||.++++++|+ ++|+.||.|.+|.+.. ++.++|||||+|.+.++|..|++.|||..+.|+.|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 456789999999999999876 7999999999988754 5789999999999999999999999999999999999
Q ss_pred eeecchhhhhh
Q 008162 114 GHFLRKQERET 124 (575)
Q Consensus 114 ~~~~~~~~~~~ 124 (575)
.++..+.....
T Consensus 105 ~~a~~~~~~~~ 115 (127)
T 2a3j_A 105 TFSETPQSQVA 115 (127)
T ss_dssp EECCCCCHHHH
T ss_pred EEccCcchhcc
Confidence 99887665443
No 276
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=118.71 Aligned_cols=76 Identities=22% Similarity=0.479 Sum_probs=70.3
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
....++|||+|||+++|+++|+++|+.||.|.++++++ +||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 34567999999999999999999999999999999974 49999999999999999999999999999999998
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
..+
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 277
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=123.76 Aligned_cols=85 Identities=20% Similarity=0.325 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCC-eeEEEEe-eC-CCCCcccEEEEEeCCHHHHHHHHHHhc--CCccCCeeeE
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGN-ILSCKIA-TD-GSGQSKGFGFVQFENKESAQNAIDKLN--GMLINDKQVF 112 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~-I~~i~v~-~~-~~g~skG~afV~F~t~e~A~~Ai~~ln--g~~i~g~~v~ 112 (575)
...++|||+|||.++|+++|+++|+.||. |.+|.+. .+ .+|.++|||||+|.+.++|.+|++.|+ +..+.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35678999999999999999999999998 9999998 55 467899999999999999999999996 5899999999
Q ss_pred Eeeecchhhh
Q 008162 113 VGHFLRKQER 122 (575)
Q Consensus 113 v~~~~~~~~~ 122 (575)
|.++..+...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9998765543
No 278
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.54 E-value=1.9e-15 Score=134.15 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=73.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecchhhhhhhhhccCCceEEEeCCCcCCCHHHHHHHhccCCCeeE
Q 008162 81 KGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 160 (575)
Q Consensus 81 kG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~ 160 (575)
+|+||.+|+.++.+..++..+..+. .+...--.. ............++|||+|||+++|+++|+++|+.|| |.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-gg~~~g~~~----g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~ 74 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASMT-GGQQMGRGS----GDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVR 74 (139)
T ss_dssp -------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSE
T ss_pred CCcccccccCccccchhcccchhcc-CCCCCCCCC----CCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeE
Confidence 3678899999988888876654432 222111000 0001111224457899999999999999999999999 679
Q ss_pred EEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEEEcccccch
Q 008162 161 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 211 (575)
Q Consensus 161 i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~v~~a~~~~ 211 (575)
|.|+.|.+|+++|||||+|++.++|++|+ .+++..+.++.|.|..+....
T Consensus 75 v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 75 VHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp EECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred EEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 99999988999999999999999999999 789999999999998876653
No 279
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.54 E-value=1.5e-14 Score=122.01 Aligned_cols=74 Identities=28% Similarity=0.539 Sum_probs=69.6
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhcc
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~ 312 (575)
..++|||+|||+++|+++|+++|+.||.|.+|+++ ++||||+|.+.++|.+|++.||+..+.|+.|.|.++..
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 45789999999999999999999999999999987 45999999999999999999999999999999999875
Q ss_pred H
Q 008162 313 K 313 (575)
Q Consensus 313 ~ 313 (575)
+
T Consensus 83 ~ 83 (103)
T 2dgu_A 83 P 83 (103)
T ss_dssp C
T ss_pred C
Confidence 5
No 280
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=3.1e-14 Score=115.42 Aligned_cols=75 Identities=21% Similarity=0.438 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh-cCCccCCeeeEEee
Q 008162 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL-NGMLINDKQVFVGH 115 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~l-ng~~i~g~~v~v~~ 115 (575)
....++|||+|||.++++++|+++|+.||.|.+|++.. ++|||||+|.+.++|.+|++.| ++..+.|+.|.|.+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 34567899999999999999999999999999999986 5899999999999999999988 99999999999987
Q ss_pred e
Q 008162 116 F 116 (575)
Q Consensus 116 ~ 116 (575)
.
T Consensus 84 a 84 (85)
T 2ytc_A 84 G 84 (85)
T ss_dssp C
T ss_pred c
Confidence 5
No 281
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2e-14 Score=119.72 Aligned_cols=78 Identities=23% Similarity=0.413 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccC--CeeeEEee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN--DKQVFVGH 115 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~--g~~v~v~~ 115 (575)
..+++|||+|||.++|+++|+++|+.||.|.+|++..+ +|||||+|.+.++|.+|++.||+..+. |+.|.|.+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 34578999999999999999999999999999998863 789999999999999999999999999 99999998
Q ss_pred ecchh
Q 008162 116 FLRKQ 120 (575)
Q Consensus 116 ~~~~~ 120 (575)
...+.
T Consensus 90 a~~~~ 94 (97)
T 1why_A 90 AKSGP 94 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 282
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.8e-14 Score=120.46 Aligned_cols=80 Identities=25% Similarity=0.404 Sum_probs=73.4
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
.....++|||+|||.++|+++|+++|+.||.|.+|++.. ++|||||+|.+.++|.+|++.||+..+.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET-----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 445678999999999999999999999999999999985 489999999999999999999999999999999998
Q ss_pred ecchh
Q 008162 116 FLRKQ 120 (575)
Q Consensus 116 ~~~~~ 120 (575)
...+.
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 76543
No 283
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.8e-14 Score=121.51 Aligned_cols=79 Identities=23% Similarity=0.300 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC--CccCCeeeEEee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG--MLINDKQVFVGH 115 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng--~~i~g~~v~v~~ 115 (575)
..+++|||+|||.++++++|+++|+.||.|.+|++.+ .||||||+|++.++|.+|++.+++ ..+.|+.|.|.+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4578999999999999999999999999999999876 489999999999999999998875 458999999999
Q ss_pred ecchhh
Q 008162 116 FLRKQE 121 (575)
Q Consensus 116 ~~~~~~ 121 (575)
+..+..
T Consensus 88 a~~~~~ 93 (104)
T 1wex_A 88 STSKRI 93 (104)
T ss_dssp CSSSSC
T ss_pred ccCccc
Confidence 876543
No 284
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=9.2e-15 Score=125.84 Aligned_cols=79 Identities=29% Similarity=0.463 Sum_probs=71.7
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCe----eEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeee
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTI----TSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v----~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V 307 (575)
...++|||+|||.++|+++|+++|+.||.| ..+++. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 356899999999999999999999999999 455544 6889999999999999999999999999999999999
Q ss_pred ehhccH
Q 008162 308 AVAQRK 313 (575)
Q Consensus 308 ~~a~~~ 313 (575)
.++..+
T Consensus 100 ~~a~~~ 105 (115)
T 2cpx_A 100 EFGKNK 105 (115)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 998864
No 285
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=125.27 Aligned_cols=82 Identities=23% Similarity=0.451 Sum_probs=76.0
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
..++|||+|||.++|+++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+||+. ++..|.|+.|.|.+..
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 3578999999999999999999999999999999998 5688999999999999999999987 9999999999999987
Q ss_pred chhh
Q 008162 118 RKQE 121 (575)
Q Consensus 118 ~~~~ 121 (575)
.+..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 6554
No 286
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.4e-14 Score=120.54 Aligned_cols=75 Identities=25% Similarity=0.418 Sum_probs=69.9
Q ss_pred ccceeEEEecCCC-CCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 232 FQGLNLYIKNLGD-SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 232 ~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
...++|||+|||+ .+++++|+++|+.||.|.++++. +|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 4577999999998 99999999999999999999984 789999999999999999999999999999999998
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
..+
T Consensus 81 ~~~ 83 (96)
T 2kvi_A 81 SSN 83 (96)
T ss_dssp ECC
T ss_pred CcC
Confidence 754
No 287
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=2.6e-14 Score=121.62 Aligned_cols=77 Identities=21% Similarity=0.279 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC-----eeeE
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIND-----KQVF 112 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g-----~~v~ 112 (575)
...++|||+|||.++|+++|+++|+.||.|.+|+|..+ |||||+|.+.++|.+||+.||+..|.| +.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 45789999999999999999999999999999999875 899999999999999999999999999 9999
Q ss_pred Eeeecchh
Q 008162 113 VGHFLRKQ 120 (575)
Q Consensus 113 v~~~~~~~ 120 (575)
|.+...+.
T Consensus 87 V~~a~~~~ 94 (108)
T 1x4c_A 87 VKVDGPRS 94 (108)
T ss_dssp EEESSCCS
T ss_pred EEeCCCCC
Confidence 99887643
No 288
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.53 E-value=6.5e-15 Score=125.17 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCC---eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGN---ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~---I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
....+|||+|||+++|+++|+++|+.||. |.+|+|..+..|.++|||||+|.+.++|.+||+ +|+..+.|+.|.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 45678999999999999999999999998 899999999779999999999999999999998 89999999999998
Q ss_pred eecchh
Q 008162 115 HFLRKQ 120 (575)
Q Consensus 115 ~~~~~~ 120 (575)
++..+.
T Consensus 88 ~a~~~~ 93 (107)
T 2lmi_A 88 EINNED 93 (107)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 876544
No 289
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=1.9e-15 Score=126.99 Aligned_cols=80 Identities=23% Similarity=0.367 Sum_probs=72.4
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeC-CCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 310 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~-~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a 310 (575)
...++|||+|||.++|+++|+++|+.||.|.+ .++.+ .+|.++|||||+|.+.++|.+|++ |||..+.|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35679999999999999999999999999988 54544 478899999999999999999998 9999999999999998
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
..+
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 765
No 290
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.53 E-value=2.8e-14 Score=127.20 Aligned_cols=79 Identities=30% Similarity=0.540 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
....++|||+|||.++|+++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++.+|+..+.|+.|.|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 345778999999999999999999999999999999998 6788999999999999999999999999999999999875
No 291
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=6.6e-16 Score=133.34 Aligned_cols=84 Identities=25% Similarity=0.512 Sum_probs=77.6
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeE--------EEEeeC-CCCCCCceEEEEeCCHHHHHHHHHHhCCceecce
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITS--------CKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~--------~~i~~~-~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~ 303 (575)
..++|||+|||.++++++|+++|+.||.|.+ |+|+.+ .+|.++|||||+|.+.++|.+|++.|||..+.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4568999999999999999999999999999 888888 4789999999999999999999999999999999
Q ss_pred eeeeehhccHHHH
Q 008162 304 PLYVAVAQRKEER 316 (575)
Q Consensus 304 ~l~V~~a~~~~~r 316 (575)
.|.|.++..+..+
T Consensus 86 ~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 86 PIKVSFATRRADF 98 (116)
Confidence 9999999876544
No 292
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1e-14 Score=124.69 Aligned_cols=79 Identities=19% Similarity=0.354 Sum_probs=71.2
Q ss_pred eeEEEecC----CCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCC----HHH----HHHHHH--HhCCce
Q 008162 235 LNLYIKNL----GDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFST----PEE----ASRALA--EMNGKM 299 (575)
Q Consensus 235 ~~l~V~nl----~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s----~~~----A~~A~~--~lng~~ 299 (575)
++|||+|| ++.+++++|+++|+.||.|.+|+++.|+ +|.++|||||+|.+ +++ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999997 88999999999996 333 899988 789999
Q ss_pred ecceeeeeehhccH
Q 008162 300 IVSKPLYVAVAQRK 313 (575)
Q Consensus 300 i~g~~l~V~~a~~~ 313 (575)
|+|+.|+|.+.+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987643
No 293
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.53 E-value=1.5e-14 Score=123.28 Aligned_cols=77 Identities=19% Similarity=0.215 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFG-NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G-~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
...+|||+|||.++|+++|+++|+.|| .|..|++..+ .++|||||+|++.++|++||+.|||..+.|+.|.|....
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 356899999999999999999999999 8999988643 489999999999999999999999999999999998875
Q ss_pred c
Q 008162 118 R 118 (575)
Q Consensus 118 ~ 118 (575)
.
T Consensus 104 ~ 104 (111)
T 2jvr_A 104 N 104 (111)
T ss_dssp C
T ss_pred C
Confidence 4
No 294
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.8e-14 Score=121.00 Aligned_cols=75 Identities=23% Similarity=0.321 Sum_probs=69.8
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~ 118 (575)
..++|||+|||.++++++|+++|+.||.|.+|++.. ++|||||+|.+.++|.+|++.|||..+.|+.|.|.+...
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 357899999999999999999999999999999983 789999999999999999999999999999999987654
No 295
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.3e-14 Score=119.53 Aligned_cols=88 Identities=30% Similarity=0.511 Sum_probs=77.6
Q ss_pred CCCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 008162 31 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDK 109 (575)
Q Consensus 31 ~~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~ 109 (575)
..+..+....++|||+|||.++|+++|+++|+.|+ +|+++.+ .++.++|||||+|.+.++|.+|++.||+..|.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2fc8_A 6 SGPNARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN 82 (102)
T ss_dssp CTTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 34455667788999999999999999999999874 6778877 5888999999999999999999999999999999
Q ss_pred eeEEeeecchhh
Q 008162 110 QVFVGHFLRKQE 121 (575)
Q Consensus 110 ~v~v~~~~~~~~ 121 (575)
.|.|.+...+..
T Consensus 83 ~l~V~~a~~~~~ 94 (102)
T 2fc8_A 83 KVTLDWAKPKGE 94 (102)
T ss_dssp ECEEEECCCCCS
T ss_pred EEEEEEecCCCC
Confidence 999999876554
No 296
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.7e-14 Score=118.94 Aligned_cols=80 Identities=14% Similarity=0.311 Sum_probs=71.6
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
.....++|||+|||.++|+++|+++|+.||.|. ++++.+ .++|||||+|.+.++|.+|++.|||..+.|+.|.|.+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 344578999999999999999999999999997 666653 5899999999999999999999999999999999998
Q ss_pred ecch
Q 008162 116 FLRK 119 (575)
Q Consensus 116 ~~~~ 119 (575)
...+
T Consensus 91 a~~~ 94 (97)
T 2e5j_A 91 ARQQ 94 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7654
No 297
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=6.1e-15 Score=122.60 Aligned_cols=77 Identities=27% Similarity=0.412 Sum_probs=70.7
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhcc
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~ 312 (575)
..++|||+|||..+++++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++..
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 56799999999999999999999999988776 44688899999999999999999999999999999999999875
Q ss_pred H
Q 008162 313 K 313 (575)
Q Consensus 313 ~ 313 (575)
+
T Consensus 91 ~ 91 (96)
T 1fjc_A 91 K 91 (96)
T ss_dssp S
T ss_pred C
Confidence 4
No 298
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=3.5e-15 Score=125.33 Aligned_cols=84 Identities=21% Similarity=0.346 Sum_probs=73.9
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
.....++|||+|||.++|+++|+++|+.||.|.+ +++.+ .+|.++|||||+|.+.++|.+|++ +|+..+.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3446789999999999999999999999999988 44444 678899999999999999999998 99999999999999
Q ss_pred eecchhh
Q 008162 115 HFLRKQE 121 (575)
Q Consensus 115 ~~~~~~~ 121 (575)
+...+..
T Consensus 91 ~a~~~~~ 97 (101)
T 1fj7_A 91 KPKGRDG 97 (101)
T ss_dssp CCSCCCC
T ss_pred EcCCCCC
Confidence 8866543
No 299
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=9.1e-15 Score=121.54 Aligned_cols=82 Identities=21% Similarity=0.338 Sum_probs=72.8
Q ss_pred CCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 35 IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 35 ~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
......++|||+|||.++|+++|+++|+.||.|..| ..++.++|||||+|.+.++|.+|++.+||..+.|+.|.|.
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 344567899999999999999999999999988766 3467899999999999999999999999999999999999
Q ss_pred eecchh
Q 008162 115 HFLRKQ 120 (575)
Q Consensus 115 ~~~~~~ 120 (575)
+...+.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 876543
No 300
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.53 E-value=4.2e-14 Score=117.81 Aligned_cols=77 Identities=26% Similarity=0.451 Sum_probs=69.8
Q ss_pred CCCCCCCeEEEcCCCC-CcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 008162 35 IRKSGTGNIFIKNLDK-SIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113 (575)
Q Consensus 35 ~r~~~~~~lfV~nLp~-~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v 113 (575)
.....+++|||+|||. ++++++|+++|+.||.|.+|++ ++|||||+|.+.++|.+|++.+||..+.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE-------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3455688999999998 9999999999999999999988 3789999999999999999999999999999999
Q ss_pred eeecc
Q 008162 114 GHFLR 118 (575)
Q Consensus 114 ~~~~~ 118 (575)
.+...
T Consensus 90 ~~a~~ 94 (97)
T 2xnq_A 90 EVSSS 94 (97)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 88754
No 301
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.53 E-value=2e-14 Score=125.49 Aligned_cols=79 Identities=23% Similarity=0.413 Sum_probs=74.3
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
..++|||+|||.++|+++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|+ .+||..|.|+.|.|.+..
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4578999999999999999999999999999999998 68899999999999999999999 899999999999998875
Q ss_pred c
Q 008162 118 R 118 (575)
Q Consensus 118 ~ 118 (575)
.
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 302
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.53 E-value=7.3e-15 Score=116.10 Aligned_cols=73 Identities=19% Similarity=0.436 Sum_probs=68.2
Q ss_pred eEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 42 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 42 ~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
+|||+|||.++++++|+++|+.||.|.+|.+..+ .+|.++|||||+|.+.++|.+|++. ++..+.|+.+.|.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 5999999999999999999999999999999988 5688999999999999999999975 88999999998865
No 303
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.52 E-value=1.1e-14 Score=122.59 Aligned_cols=81 Identities=30% Similarity=0.578 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~ 118 (575)
..++|||+|||.++++++|+++|+.||.|.+|++..+.+|.++|||||+|.+.++|.+|++ ++..++|+.+.|.+...
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 4578999999999999999999999999999999999989999999999999999999997 89999999999998876
Q ss_pred hhh
Q 008162 119 KQE 121 (575)
Q Consensus 119 ~~~ 121 (575)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 544
No 304
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.52 E-value=2.8e-14 Score=116.91 Aligned_cols=77 Identities=16% Similarity=0.398 Sum_probs=63.7
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCcee--cceeeeeeh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVAV 309 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i--~g~~l~V~~ 309 (575)
...++|||+|||+++|+++|+++|++||.|.+|+|+.+ +||||||+|.+.++|.+ +++..+ .|+.|.|.+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISN 80 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEE
Confidence 45679999999999999999999999999999999886 79999999999999983 666665 499999999
Q ss_pred hccHHHH
Q 008162 310 AQRKEER 316 (575)
Q Consensus 310 a~~~~~r 316 (575)
+.++..+
T Consensus 81 a~~k~~~ 87 (89)
T 3d2w_A 81 AEPKHNK 87 (89)
T ss_dssp CC-----
T ss_pred cCCCCcC
Confidence 9876543
No 305
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.2e-14 Score=126.96 Aligned_cols=83 Identities=20% Similarity=0.298 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeE-EEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILS-CKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~-i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
....+|||+|||.++|+++|+++|+.||.|.+ +.+..+.+|.++|||||+|.+.++|.+||+ +|+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 35578999999999999999999999999988 444555789999999999999999999998 9999999999999988
Q ss_pred cchhh
Q 008162 117 LRKQE 121 (575)
Q Consensus 117 ~~~~~ 121 (575)
..+..
T Consensus 102 ~~~~~ 106 (124)
T 1wel_A 102 TKKGM 106 (124)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 76553
No 306
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.3e-14 Score=120.26 Aligned_cols=82 Identities=22% Similarity=0.373 Sum_probs=74.0
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
.....++|||+|||.++|+++|+++|+.||.| ++..+.++.++|||||+|.+.++|.+|++.||+..+.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 34467899999999999999999999999977 566677889999999999999999999999999999999999998
Q ss_pred ecchh
Q 008162 116 FLRKQ 120 (575)
Q Consensus 116 ~~~~~ 120 (575)
...+.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 87654
No 307
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.1e-14 Score=120.75 Aligned_cols=80 Identities=30% Similarity=0.436 Sum_probs=72.2
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
....++|||+|||.++++++|+++|+.|+ +++++.+. ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 44568999999999999999999999873 67777774 788999999999999999999999999999999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
++.+
T Consensus 89 a~~~ 92 (102)
T 2fc8_A 89 AKPK 92 (102)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8864
No 308
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.4e-14 Score=123.11 Aligned_cols=79 Identities=19% Similarity=0.231 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCC-cCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC--CccCCeeeEE
Q 008162 37 KSGTGNIFIKNLDKS-IDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG--MLINDKQVFV 113 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~-ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng--~~i~g~~v~v 113 (575)
...+++|||+|||.+ +|+++|+++|+.||.|.+|+|.+ ++|||||+|++.++|.+|++.|++ ..+.|+.|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345789999999998 99999999999999999999975 689999999999999999998864 5699999999
Q ss_pred eeecchh
Q 008162 114 GHFLRKQ 120 (575)
Q Consensus 114 ~~~~~~~ 120 (575)
.++..+.
T Consensus 97 ~~a~~~~ 103 (112)
T 1x4f_A 97 DLSEKYK 103 (112)
T ss_dssp EEECSCS
T ss_pred EECcccc
Confidence 9986544
No 309
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.1e-14 Score=118.32 Aligned_cols=75 Identities=29% Similarity=0.473 Sum_probs=69.6
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhc--CCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEF--GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
...++|||+|||+.+|+++|+++|+.| |.|.++++. +|||||+|.+.++|.+|+..|||..+.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 356799999999999999999999999 999999874 67999999999999999999999999999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
+..+
T Consensus 86 a~~~ 89 (99)
T 2cpd_A 86 AKPV 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 310
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.8e-14 Score=120.80 Aligned_cols=79 Identities=25% Similarity=0.456 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
...++|||+|||.++|+++|+++|+.||.|.+|++..+ +|||||+|.+.++|.+|++.||+..+.|+.|.|.+..
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 34678999999999999999999999999999999874 8999999999999999999999999999999999987
Q ss_pred chhh
Q 008162 118 RKQE 121 (575)
Q Consensus 118 ~~~~ 121 (575)
.+..
T Consensus 98 ~~~~ 101 (109)
T 1x4g_A 98 ESPD 101 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 311
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.52 E-value=2.4e-14 Score=129.39 Aligned_cols=77 Identities=19% Similarity=0.333 Sum_probs=70.7
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecc--eeeeeehhc
Q 008162 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS--KPLYVAVAQ 311 (575)
Q Consensus 234 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g--~~l~V~~a~ 311 (575)
..+|||+||++.+|+++|+++|++||.|.+|+|+.+. ++|||||+|.+.++|.+|++.|||..|.| +.|+|.|++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 4579999999999999999999999999999997653 57899999999999999999999999965 999999998
Q ss_pred cH
Q 008162 312 RK 313 (575)
Q Consensus 312 ~~ 313 (575)
.+
T Consensus 123 ~~ 124 (164)
T 1sjr_A 123 LT 124 (164)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 312
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.52 E-value=1.5e-14 Score=120.41 Aligned_cols=83 Identities=29% Similarity=0.446 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHH----HHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 008162 38 SGTGNIFIKNLDKSIDHKALH----DTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~----~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v 113 (575)
..+++|||+|||.++++++|+ ++|+.||.|.+|++.. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 356789999999999999999 9999999999998874 5678999999999999999999999999999999999
Q ss_pred eeecchhhh
Q 008162 114 GHFLRKQER 122 (575)
Q Consensus 114 ~~~~~~~~~ 122 (575)
.+...+...
T Consensus 84 ~~a~~~~~~ 92 (97)
T 1nu4_A 84 QYAKTDSDI 92 (97)
T ss_dssp EECSSCCTH
T ss_pred EEccCCCcc
Confidence 998765543
No 313
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.52 E-value=1.8e-14 Score=139.58 Aligned_cols=82 Identities=24% Similarity=0.347 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcC--CeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFG--NILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G--~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
..++|||+||+.++|+++|+++|+.|| .|.+|+|+.| .+|.++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 9999999999 6899999999999999999999999999999999999988
Q ss_pred ecchh
Q 008162 116 FLRKQ 120 (575)
Q Consensus 116 ~~~~~ 120 (575)
+....
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 76543
No 314
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.8e-14 Score=123.25 Aligned_cols=76 Identities=18% Similarity=0.199 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
...++|||+|||.++++++|+++|+.||.|.+|.+.. ++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3467899999999999999999999999999998874 78899999999999999999999999999999999876
Q ss_pred c
Q 008162 118 R 118 (575)
Q Consensus 118 ~ 118 (575)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 315
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.52 E-value=7.5e-14 Score=117.86 Aligned_cols=82 Identities=16% Similarity=0.258 Sum_probs=72.9
Q ss_pred ccceeEEEecCCC-----CCCHHHHHHHhhhcCCeeEEEEeeCC--CCCCCceEEEEeCCHHHHHHHHHHhCCceeccee
Q 008162 232 FQGLNLYIKNLGD-----SIDDEKLKELFSEFGTITSCKVMRDP--SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304 (575)
Q Consensus 232 ~~~~~l~V~nl~~-----~~t~~~l~~~F~~~G~v~~~~i~~~~--~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~ 304 (575)
..+.+|+|+|+-. +-++++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|.+|++.|||+.+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3567899999963 23789999999999999999999875 3689999999999999999999999999999999
Q ss_pred eeeehhccH
Q 008162 305 LYVAVAQRK 313 (575)
Q Consensus 305 l~V~~a~~~ 313 (575)
|.|.++...
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999999864
No 316
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.4e-14 Score=119.69 Aligned_cols=75 Identities=24% Similarity=0.378 Sum_probs=68.1
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCC-eeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCC-ceecceeeeeehh
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGT-ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG-KMIVSKPLYVAVA 310 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~-v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng-~~i~g~~l~V~~a 310 (575)
..++|||+|||+++|+++|+++|+.||. |..+.+. ++|||||+|.+.++|.+|++.||| ..++|+.|.|.++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 4578999999999999999999999999 6666653 489999999999999999999999 9999999999998
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
..+
T Consensus 81 ~~~ 83 (93)
T 2cqh_A 81 VSK 83 (93)
T ss_dssp CCC
T ss_pred cCc
Confidence 754
No 317
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.51 E-value=4.4e-14 Score=120.13 Aligned_cols=77 Identities=26% Similarity=0.468 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
....++|||+|||.++|+++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.|||..+.|+.|.|.+.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 3467889999999999999999999999999999997 789999999999999999999999999999999987
Q ss_pred cchh
Q 008162 117 LRKQ 120 (575)
Q Consensus 117 ~~~~ 120 (575)
....
T Consensus 101 ~~~~ 104 (108)
T 2jvo_A 101 KLPA 104 (108)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 6544
No 318
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.51 E-value=8.9e-15 Score=131.17 Aligned_cols=83 Identities=27% Similarity=0.474 Sum_probs=73.1
Q ss_pred cccceeEEEecCCCCCCHHHHHHHhhhcCCeeEE------EEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceeccee
Q 008162 231 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC------KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 304 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~------~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~ 304 (575)
....++|||+|||+.+|+++|+++|+.||.|.++ .+....+|.++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4467899999999999999999999999998874 2222246889999999999999999999999999999999
Q ss_pred eeeehhccH
Q 008162 305 LYVAVAQRK 313 (575)
Q Consensus 305 l~V~~a~~~ 313 (575)
|.|.++...
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999754
No 319
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.51 E-value=2.1e-14 Score=117.42 Aligned_cols=74 Identities=20% Similarity=0.343 Sum_probs=69.0
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhcc
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~ 312 (575)
..++|||+|||+++++++|+++|++| .|.++++. .++|||||+|.+.++|.+|++.|||..++|+.|.|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 35689999999999999999999999 99999984 5699999999999999999999999999999999999764
No 320
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.51 E-value=3.1e-14 Score=121.58 Aligned_cols=73 Identities=26% Similarity=0.560 Sum_probs=69.1
Q ss_pred cceeEEEecCCCC-CCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 233 QGLNLYIKNLGDS-IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 233 ~~~~l~V~nl~~~-~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
..++|||+|||++ +++++|+++|+.||.|.+|++ ++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 4579999999999 999999999999999999998 48899999999999999999999999999999999987
Q ss_pred c
Q 008162 312 R 312 (575)
Q Consensus 312 ~ 312 (575)
.
T Consensus 99 ~ 99 (110)
T 1wf1_A 99 E 99 (110)
T ss_dssp C
T ss_pred C
Confidence 4
No 321
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=6.5e-14 Score=115.42 Aligned_cols=79 Identities=20% Similarity=0.431 Sum_probs=71.7
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
.....++|||+|||.++|+++|+++|+.||.|.+|++.+ +||||+|.+.++|.+|++.||+..+.|+.|.|.+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 345678999999999999999999999999999999974 4999999999999999999999999999999999
Q ss_pred ecchhh
Q 008162 116 FLRKQE 121 (575)
Q Consensus 116 ~~~~~~ 121 (575)
...+..
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 876543
No 322
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.51 E-value=1.2e-14 Score=153.93 Aligned_cols=91 Identities=20% Similarity=0.461 Sum_probs=82.1
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccC
Q 008162 29 SHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 107 (575)
Q Consensus 29 s~~~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~ 107 (575)
...++........+|||+|||.+||+++|.++|+.||.|.+|+|+.+ .+|.++|||||+|.+.++|.+||+.|||..|.
T Consensus 91 p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~ 170 (437)
T 3pgw_S 91 PHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID 170 (437)
T ss_pred CcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC
Confidence 34445555566789999999999999999999999999999999998 58889999999999999999999999999999
Q ss_pred CeeeEEeeecch
Q 008162 108 DKQVFVGHFLRK 119 (575)
Q Consensus 108 g~~v~v~~~~~~ 119 (575)
|+.|.|.+....
T Consensus 171 gr~i~V~~a~~~ 182 (437)
T 3pgw_S 171 GRRVLVDVERGR 182 (437)
T ss_pred CEEEEEEEeCCC
Confidence 999999988653
No 323
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.51 E-value=5.9e-14 Score=130.32 Aligned_cols=82 Identities=21% Similarity=0.413 Sum_probs=77.1
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~ 118 (575)
..++|||+|||.++++++|+++|+.||.|.+|+|..+.+|.++|||||+|.+.++|.+|++.+|+..|.|+.|.|.++..
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 46789999999999999999999999999999999998899999999999999999999999999999999999998765
Q ss_pred hh
Q 008162 119 KQ 120 (575)
Q Consensus 119 ~~ 120 (575)
..
T Consensus 167 ~~ 168 (177)
T 2f3j_A 167 QI 168 (177)
T ss_dssp GG
T ss_pred CC
Confidence 43
No 324
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.51 E-value=5.2e-14 Score=122.53 Aligned_cols=76 Identities=20% Similarity=0.344 Sum_probs=69.8
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCce-EEEEeCCHHHHHHHHHHhCCceecc--eeeeeehh
Q 008162 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS-GFVAFSTPEEASRALAEMNGKMIVS--KPLYVAVA 310 (575)
Q Consensus 234 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~-afV~f~s~~~A~~A~~~lng~~i~g--~~l~V~~a 310 (575)
-..|||+||++.+|+++|+++|++||.|.+|+++.+ ++|| |||+|.+.++|.+|++.|||..|.| +.|+|.++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 346899999999999999999999999999998865 3678 9999999999999999999999988 99999999
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
+.+
T Consensus 104 k~~ 106 (130)
T 3zzy_A 104 KLT 106 (130)
T ss_dssp SCS
T ss_pred CCC
Confidence 865
No 325
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=6.9e-14 Score=114.74 Aligned_cols=77 Identities=26% Similarity=0.486 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
....++|||+|||.++|+++|+++|+.||.|.+|++.+ +||||+|.+.++|.+|++.||+..+.|+.|.|.+.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 44677899999999999999999999999999999974 49999999999999999999999999999999998
Q ss_pred cchh
Q 008162 117 LRKQ 120 (575)
Q Consensus 117 ~~~~ 120 (575)
....
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 326
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.50 E-value=5.3e-14 Score=118.58 Aligned_cols=78 Identities=21% Similarity=0.488 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
...++|||+|||.++|+++|+++|+.||.|.+|++. ++||||+|.+.++|.+|++.||+..|.|+.|.|.+..
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 456789999999999999999999999999999986 4599999999999999999999999999999999987
Q ss_pred chhhh
Q 008162 118 RKQER 122 (575)
Q Consensus 118 ~~~~~ 122 (575)
.+...
T Consensus 82 ~~~~~ 86 (103)
T 2dgu_A 82 PPDQK 86 (103)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 65543
No 327
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.50 E-value=2.3e-14 Score=124.86 Aligned_cols=80 Identities=23% Similarity=0.335 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCee--EEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNIL--SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~--~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
...++|||+|||+++|+++|+++|+.| .|. +|+|+.|..|.++|||||+|.+.++|.+||+. ++..|.|+.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 346789999999999999999999999 677 99999997799999999999999999999975 77999999999987
Q ss_pred ecch
Q 008162 116 FLRK 119 (575)
Q Consensus 116 ~~~~ 119 (575)
+..+
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 7543
No 328
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7e-14 Score=116.44 Aligned_cols=75 Identities=29% Similarity=0.469 Sum_probs=69.1
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
...++|||+|+ ++|+++|+++|+.||.|.+|+|. .++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 35679999996 89999999999999999999984 468999999999999999999999999999999999987
Q ss_pred cH
Q 008162 312 RK 313 (575)
Q Consensus 312 ~~ 313 (575)
.+
T Consensus 86 ~~ 87 (97)
T 1x5p_A 86 KQ 87 (97)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 329
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.8e-14 Score=116.40 Aligned_cols=78 Identities=23% Similarity=0.389 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCC-eeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC-CccCCeeeEEee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGN-ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG-MLINDKQVFVGH 115 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~-I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng-~~i~g~~v~v~~ 115 (575)
...++|||+|||.++|+++|+++|+.||. |..+.+. ++|||||+|.+.++|.+|++.||+ ..+.|+.|.|.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 45678999999999999999999999999 6666663 689999999999999999999999 999999999999
Q ss_pred ecchhh
Q 008162 116 FLRKQE 121 (575)
Q Consensus 116 ~~~~~~ 121 (575)
...+..
T Consensus 80 a~~~~~ 85 (93)
T 2cqh_A 80 SVSKKL 85 (93)
T ss_dssp CCCCCC
T ss_pred ccCccc
Confidence 876544
No 330
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=5.2e-14 Score=117.02 Aligned_cols=78 Identities=26% Similarity=0.454 Sum_probs=70.3
Q ss_pred CCCCCeEEEcCCCC-CcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEee
Q 008162 37 KSGTGNIFIKNLDK-SIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 115 (575)
Q Consensus 37 ~~~~~~lfV~nLp~-~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~ 115 (575)
....++|||+|||. ++|+++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.||+..+.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34577899999998 99999999999999999999983 78999999999999999999999999999999998
Q ss_pred ecchhh
Q 008162 116 FLRKQE 121 (575)
Q Consensus 116 ~~~~~~ 121 (575)
......
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 865443
No 331
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6.3e-14 Score=120.57 Aligned_cols=81 Identities=23% Similarity=0.431 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCe----eEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNI----LSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I----~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v 113 (575)
..+++|||+|||.++|+++|+++|+.||.| ..+++. +|.++|||||+|.+.++|.+|++.||+..+.|+.|.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 356899999999999999999999999998 455554 6789999999999999999999999999999999999
Q ss_pred eeecchhh
Q 008162 114 GHFLRKQE 121 (575)
Q Consensus 114 ~~~~~~~~ 121 (575)
.++..+..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpx_A 100 EFGKNKKQ 107 (115)
T ss_dssp EECCCCSC
T ss_pred EEccCCCC
Confidence 99876544
No 332
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.48 E-value=4.5e-14 Score=121.56 Aligned_cols=69 Identities=23% Similarity=0.298 Sum_probs=63.2
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeee
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 307 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V 307 (575)
..++|||+|||+++++++|+++|+.||.|.+|+|+.+ |||||+|.+.++|.+|++.|||..|+|+.|.|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~ 83 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 83 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeee
Confidence 3578999999999999999999999999999999876 89999999999999999999999999998443
No 333
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=1.1e-13 Score=120.05 Aligned_cols=74 Identities=24% Similarity=0.276 Sum_probs=67.6
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCce-EEEEeCCHHHHHHHHHHhCCceecc--eeeeeehhc
Q 008162 235 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS-GFVAFSTPEEASRALAEMNGKMIVS--KPLYVAVAQ 311 (575)
Q Consensus 235 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~-afV~f~s~~~A~~A~~~lng~~i~g--~~l~V~~a~ 311 (575)
..|||+||++.+|+++|+++|+.||.|.+|+|+.. .|| |||+|.+.++|.+|++.|||..|.| +.|.|.+++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 45789999999999999999999999999999763 386 9999999999999999999999987 689999987
Q ss_pred cH
Q 008162 312 RK 313 (575)
Q Consensus 312 ~~ 313 (575)
.+
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 334
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=7.2e-14 Score=112.93 Aligned_cols=70 Identities=24% Similarity=0.391 Sum_probs=63.6
Q ss_pred eeEEEecCCCCCCHHH----HHHHhhhc-CCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeeh
Q 008162 235 LNLYIKNLGDSIDDEK----LKELFSEF-GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 309 (575)
Q Consensus 235 ~~l~V~nl~~~~t~~~----l~~~F~~~-G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~ 309 (575)
+.|||+|||+.+++++ |+++|+.| |.|.+|. | |||||.|.+.++|.+|++.|||..+.||+|+|.+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------g---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------G---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------T---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------c---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 4499999999999987 55899999 4999992 2 9999999999999999999999999999999999
Q ss_pred hccH
Q 008162 310 AQRK 313 (575)
Q Consensus 310 a~~~ 313 (575)
|+.+
T Consensus 81 A~~~ 84 (96)
T 2diu_A 81 TPKN 84 (96)
T ss_dssp SCCS
T ss_pred cCCC
Confidence 9865
No 335
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=9.5e-14 Score=114.90 Aligned_cols=75 Identities=20% Similarity=0.342 Sum_probs=66.4
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccH
Q 008162 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 234 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~ 313 (575)
.++|||+|||+++|+++|+++|+.||.|.+| +....+|. ||||+|.+.++|.+|++ |||..++|+.|.|.++..+
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 4589999999999999999999999999998 33333443 99999999999999999 9999999999999977643
No 336
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.1e-13 Score=114.00 Aligned_cols=77 Identities=23% Similarity=0.411 Sum_probs=70.3
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHHhhc--CCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 37 KSGTGNIFIKNLDKSIDHKALHDTFSSF--GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~ite~~L~~~F~~~--G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
....++|||+|||.++|+++|+++|+.| |.|.+|++. +|||||+|.+.++|.+|++.||+..+.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3467899999999999999999999999 999988864 6799999999999999999999999999999999
Q ss_pred eecchh
Q 008162 115 HFLRKQ 120 (575)
Q Consensus 115 ~~~~~~ 120 (575)
+...+.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 887654
No 337
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=6.8e-14 Score=116.18 Aligned_cols=78 Identities=27% Similarity=0.391 Sum_probs=70.5
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEE-EeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCK-VMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~-i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
..++|||+|||+++++++|+++|+.||.|.+++ |+.+.. .|.|||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 467899999999999999999999999999994 777642 3349999999999999999999999999999999988
Q ss_pred cH
Q 008162 312 RK 313 (575)
Q Consensus 312 ~~ 313 (575)
++
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 338
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.47 E-value=1.5e-13 Score=111.86 Aligned_cols=70 Identities=21% Similarity=0.485 Sum_probs=65.9
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhc----C-------CeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceec
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEF----G-------TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~----G-------~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~ 301 (575)
..++|||+|||+++++++|+++|+.| | .|.++++..+ +|||||+|.+.++|.+|+ .|||..+.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 45689999999999999999999999 8 8999998866 899999999999999999 99999999
Q ss_pred ceeeeee
Q 008162 302 SKPLYVA 308 (575)
Q Consensus 302 g~~l~V~ 308 (575)
|+.|.|+
T Consensus 79 g~~l~V~ 85 (87)
T 2hzc_A 79 GQSLKIR 85 (87)
T ss_dssp TEECEEE
T ss_pred CeEEEEe
Confidence 9999987
No 339
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=9.5e-14 Score=118.13 Aligned_cols=78 Identities=14% Similarity=0.301 Sum_probs=68.1
Q ss_pred CCCCCCeEEE--cCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCcc-----CC
Q 008162 36 RKSGTGNIFI--KNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI-----ND 108 (575)
Q Consensus 36 r~~~~~~lfV--~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i-----~g 108 (575)
....+.+||| +||+.++|+++|+++|+.||.|.+|.+.. .+|||||+|++.++|.+|++.|||..+ .|
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 3345778999 66999999999999999999999998764 479999999999999999999999987 67
Q ss_pred eeeEEeeecc
Q 008162 109 KQVFVGHFLR 118 (575)
Q Consensus 109 ~~v~v~~~~~ 118 (575)
+.++|.+...
T Consensus 96 ~~l~v~~a~~ 105 (114)
T 2cq2_A 96 ITLYLNFVEK 105 (114)
T ss_dssp EECEEEEESC
T ss_pred cEEEEEeccc
Confidence 8888877653
No 340
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.46 E-value=1.2e-13 Score=112.86 Aligned_cols=74 Identities=27% Similarity=0.453 Sum_probs=69.0
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~ 118 (575)
..++|||+|||.++++++|+++|+.| .|.+|++. .++|||||+|.+.++|.+|++.+||..+.|+.+.|.+...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 46789999999999999999999999 99999985 4899999999999999999999999999999999988654
No 341
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.19 E-value=4.8e-15 Score=127.88 Aligned_cols=85 Identities=27% Similarity=0.434 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeE--------EEEeeC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILS--------CKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLIND 108 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~--------i~v~~~-~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g 108 (575)
...++|||+|||.++++++|+++|+.||.|.+ |++..+ .++.++|||||+|.+.++|.+|++.||+..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45678999999999999999999999999999 889988 678899999999999999999999999999999
Q ss_pred eeeEEeeecchhhh
Q 008162 109 KQVFVGHFLRKQER 122 (575)
Q Consensus 109 ~~v~v~~~~~~~~~ 122 (575)
+.|.|.++..+...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999998766544
No 342
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.46 E-value=1.7e-13 Score=129.14 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=72.6
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhcc
Q 008162 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 312 (575)
Q Consensus 234 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~ 312 (575)
.++|||+|||+++|+++|+++|+.||.|.+|+|.++.+|.++|||||+|.+.++|.+|+..++ ..++|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 458999999999999999999999999999999999889999999999999999999998655 599999999998764
No 343
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.8e-13 Score=113.29 Aligned_cols=79 Identities=18% Similarity=0.373 Sum_probs=67.9
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
....++|||+|||.++|+++|+++|+.||.|.+| +....+|. ||||+|.+.++|.+|++ +|+..+.|+.|.|.+.
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 3456799999999999999999999999999988 33223443 99999999999999999 9999999999999876
Q ss_pred cchh
Q 008162 117 LRKQ 120 (575)
Q Consensus 117 ~~~~ 120 (575)
..+.
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 5443
No 344
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.45 E-value=2.9e-13 Score=127.53 Aligned_cols=115 Identities=15% Similarity=0.216 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHh--CCCccCCeeEEEEeCCCCCC--C-----CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEe
Q 008162 3 MLSSAARALDVL--NFTPLNNKSIRIMYSHRDPS--I-----RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA 73 (575)
Q Consensus 3 ~~~dA~~a~~~~--n~~~i~g~~iri~~s~~~~~--~-----r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~ 73 (575)
+.+....|+... ....+.+...+|.-....|. . .....++|||+|||.++|+++|+++|+.||.|.+|.+.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 456677888777 55566665555543322222 1 12245789999999999999999999999999999999
Q ss_pred eCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q 008162 74 TDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118 (575)
Q Consensus 74 ~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~ 118 (575)
.+.+|.++|||||+|++.++|.+|++.++ ..+.|+.|.|.+...
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 99889999999999999999999997654 589999999987544
No 345
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.45 E-value=1e-13 Score=119.32 Aligned_cols=74 Identities=22% Similarity=0.302 Sum_probs=65.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCee-----eE
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQ-----VF 112 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~-----v~ 112 (575)
....+|||+|||.++|+++|+++|+.||.|.+|+|..+ |||||+|++.++|.+||+.||+..|.|+. +.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 34678999999999999999999999999999999875 89999999999999999999999999988 55
Q ss_pred Eeeec
Q 008162 113 VGHFL 117 (575)
Q Consensus 113 v~~~~ 117 (575)
|....
T Consensus 88 v~~~~ 92 (115)
T 3beg_B 88 VKVDG 92 (115)
T ss_dssp EEECC
T ss_pred eccCC
Confidence 55443
No 346
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.6e-13 Score=112.10 Aligned_cols=78 Identities=24% Similarity=0.422 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeee
Q 008162 37 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 116 (575)
Q Consensus 37 ~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~ 116 (575)
....++|||+|| ++|+++|+++|+.||.|.+|++. .++|||||+|.+.++|.+|++.||+..+.|+.|.|.+.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 346789999996 89999999999999999999985 47899999999999999999999999999999999988
Q ss_pred cchhh
Q 008162 117 LRKQE 121 (575)
Q Consensus 117 ~~~~~ 121 (575)
..+..
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 66543
No 347
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.44 E-value=8.2e-14 Score=124.83 Aligned_cols=84 Identities=25% Similarity=0.380 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEE------EEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC------KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 111 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i------~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v 111 (575)
..+++|||+|||.++|+++|+++|+.||.|.+| .+....+|.++|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 456789999999999999999999999998874 12222468899999999999999999999999999999999
Q ss_pred EEeeecchhh
Q 008162 112 FVGHFLRKQE 121 (575)
Q Consensus 112 ~v~~~~~~~~ 121 (575)
.|.++.....
T Consensus 123 ~V~~a~~~~~ 132 (143)
T 3egn_A 123 VVQFARSARP 132 (143)
T ss_dssp EEEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9998865443
No 348
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.44 E-value=2.6e-13 Score=122.69 Aligned_cols=79 Identities=25% Similarity=0.272 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC--eeeEEee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIND--KQVFVGH 115 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g--~~v~v~~ 115 (575)
+...+|||+||++++|+++|+++|+.||.|.+|++..+. ++|||||+|++.++|.+|++.|||..|.| +.|.|.+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 445679999999999999999999999999999997642 57899999999999999999999999965 9999998
Q ss_pred ecch
Q 008162 116 FLRK 119 (575)
Q Consensus 116 ~~~~ 119 (575)
+..+
T Consensus 121 Ak~~ 124 (164)
T 1sjr_A 121 SKLT 124 (164)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 8754
No 349
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.43 E-value=2.1e-13 Score=118.37 Aligned_cols=75 Identities=29% Similarity=0.469 Sum_probs=69.4
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
...++|||+|+ ++|+++|+++|+.||.|.+|++. .++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 45789999996 69999999999999999999986 468999999999999999999999999999999999988
Q ss_pred cH
Q 008162 312 RK 313 (575)
Q Consensus 312 ~~ 313 (575)
.+
T Consensus 110 ~~ 111 (121)
T 2bz2_A 110 KQ 111 (121)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 350
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.43 E-value=2.8e-13 Score=110.89 Aligned_cols=75 Identities=21% Similarity=0.401 Sum_probs=62.5
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCc--cCCeeeEEee
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGML--INDKQVFVGH 115 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~--i~g~~v~v~~ 115 (575)
....+|||+|||.++|+++|+++|+.||.|.+|++..+ ++|||||+|++.++|.+ +++.. +.|+.|.|..
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISN 80 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEE
Confidence 34678999999999999999999999999999999875 89999999999999984 45544 4689999988
Q ss_pred ecchh
Q 008162 116 FLRKQ 120 (575)
Q Consensus 116 ~~~~~ 120 (575)
+..+.
T Consensus 81 a~~k~ 85 (89)
T 3d2w_A 81 AEPKH 85 (89)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 76554
No 351
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=3.8e-13 Score=111.63 Aligned_cols=81 Identities=22% Similarity=0.432 Sum_probs=71.1
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEE-EeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEe
Q 008162 36 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK-IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 114 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~-v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~ 114 (575)
.....++|||+|||.++|+++|+++|+.||.|.+|+ +..+. ..|.|||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~---~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS---ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS---SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 344578899999999999999999999999999994 77663 23349999999999999999999999999999999
Q ss_pred eecch
Q 008162 115 HFLRK 119 (575)
Q Consensus 115 ~~~~~ 119 (575)
++..+
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 87654
No 352
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.43 E-value=2.5e-13 Score=110.47 Aligned_cols=71 Identities=20% Similarity=0.512 Sum_probs=66.1
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhc----C-------CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccC
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSF----G-------NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 107 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~----G-------~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~ 107 (575)
..++|||+|||.++++++|+++|+.| | .|.+|++.. ++|||||+|.+.++|.+|+ .+|+..+.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-----~kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-----SSSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-----CCcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 46789999999999999999999999 8 899999876 4899999999999999999 99999999
Q ss_pred CeeeEEee
Q 008162 108 DKQVFVGH 115 (575)
Q Consensus 108 g~~v~v~~ 115 (575)
|+.|.|.+
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99998864
No 353
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.43 E-value=4.1e-13 Score=116.86 Aligned_cols=76 Identities=26% Similarity=0.336 Sum_probs=68.3
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccE-EEEEeCCHHHHHHHHHHhcCCccCC--eeeEEeee
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGF-GFVQFENKESAQNAIDKLNGMLIND--KQVFVGHF 116 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~-afV~F~t~e~A~~Ai~~lng~~i~g--~~v~v~~~ 116 (575)
.-.|||+||++.+|+++|+++|+.||.|.+|++..+ ++|+ |||+|.+.++|.+|++.|||..|.| +.|.|.++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 345789999999999999999999999999999874 4677 9999999999999999999999988 88999887
Q ss_pred cch
Q 008162 117 LRK 119 (575)
Q Consensus 117 ~~~ 119 (575)
...
T Consensus 104 k~~ 106 (130)
T 3zzy_A 104 KLT 106 (130)
T ss_dssp SCS
T ss_pred CCC
Confidence 654
No 354
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.5e-13 Score=116.13 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=69.7
Q ss_pred CeEEEcCC----CCCcCHHHHHHHHhhcCCeeEEEEeeC-CCCCcccEEEEEeCC----HHH----HHHHHH--HhcCCc
Q 008162 41 GNIFIKNL----DKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFEN----KES----AQNAID--KLNGML 105 (575)
Q Consensus 41 ~~lfV~nL----p~~ite~~L~~~F~~~G~I~~i~v~~~-~~g~skG~afV~F~t----~e~----A~~Ai~--~lng~~ 105 (575)
.+|||+|| |+++++.+|+++|+.||.|.+|+++.| .+|.++|||||+|.+ +++ |.+|++ .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 999999999999999999999999999 689999999999996 333 899988 789999
Q ss_pred cCCeeeEEeeecc
Q 008162 106 INDKQVFVGHFLR 118 (575)
Q Consensus 106 i~g~~v~v~~~~~ 118 (575)
|.|+.+.|.....
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999986543
No 355
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=3.3e-13 Score=115.92 Aligned_cols=76 Identities=25% Similarity=0.421 Sum_probs=65.5
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCC-C---CCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-S---GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~-~---g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v 113 (575)
+..++|||+|||.++|+++|+++|+.||.|. +.++.+. + |.++|||||+|++.++|.+|++.+++ ++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 4568899999999999999999999999999 7777763 3 78999999999999999999998843 67777776
Q ss_pred eee
Q 008162 114 GHF 116 (575)
Q Consensus 114 ~~~ 116 (575)
...
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 356
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.41 E-value=2.4e-13 Score=131.17 Aligned_cols=80 Identities=21% Similarity=0.377 Sum_probs=70.8
Q ss_pred ccceeEEEecCCCCC---------CHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCcee--
Q 008162 232 FQGLNLYIKNLGDSI---------DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-- 300 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~---------t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i-- 300 (575)
...++|||+||+..+ ++++|+++|+.||.|++|+|+.+ ||||||+|.+.++|..|++.|+|..+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 356799999999998 79999999999999999999865 89999999999999999999999999
Q ss_pred ----------cceeeeeehhccHHHH
Q 008162 301 ----------VSKPLYVAVAQRKEER 316 (575)
Q Consensus 301 ----------~g~~l~V~~a~~~~~r 316 (575)
.|+.|.|.||..+...
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC-----
T ss_pred cccccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876544
No 357
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.8e-13 Score=116.33 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=66.0
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC-C---CCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeee
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-S---GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~-~---g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~ 308 (575)
..++|||+|||+++|+++|+++|++||.|. +.++.+. + |.++|||||+|.+.++|.+|++.|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 457899999999999999999999999999 7777664 3 7999999999999999999999984 3777777776
Q ss_pred hhc
Q 008162 309 VAQ 311 (575)
Q Consensus 309 ~a~ 311 (575)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 544
No 358
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.40 E-value=1.1e-12 Score=110.67 Aligned_cols=84 Identities=20% Similarity=0.237 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCC-----CcCHHHHHHHHhhcCCeeEEEEeeCC--CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 008162 37 KSGTGNIFIKNLDK-----SIDHKALHDTFSSFGNILSCKIATDG--SGQSKGFGFVQFENKESAQNAIDKLNGMLINDK 109 (575)
Q Consensus 37 ~~~~~~lfV~nLp~-----~ite~~L~~~F~~~G~I~~i~v~~~~--~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~ 109 (575)
...++.|+|+||-. +-++++|++.|++||.|.+|+|..+. .+.++|||||+|.+.++|.+|++.|||..+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35678899999963 23789999999999999999999984 367899999999999999999999999999999
Q ss_pred eeEEeeecchh
Q 008162 110 QVFVGHFLRKQ 120 (575)
Q Consensus 110 ~v~v~~~~~~~ 120 (575)
.|.|.++....
T Consensus 85 ~i~v~~a~~~~ 95 (105)
T 2pe8_A 85 VVKACFYNLDK 95 (105)
T ss_dssp ECEEEECCHHH
T ss_pred EEEEEEcCHHH
Confidence 99999886533
No 359
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.4e-13 Score=112.31 Aligned_cols=73 Identities=18% Similarity=0.392 Sum_probs=63.9
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCc--eecceeeeeehh
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK--MIVSKPLYVAVA 310 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~--~i~g~~l~V~~a 310 (575)
..++|||+|||+++++++|+++|+.||.|.+|+|+.+ ++|||||+|.+.++|.+| ++. .+.|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSL----CGEDLIIKGISVHISNA 75 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEEec
Confidence 4579999999999999999999999999999999876 689999999999999754 444 448999999988
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
.++
T Consensus 76 ~~~ 78 (88)
T 1wf0_A 76 EPK 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 360
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=7.7e-13 Score=106.94 Aligned_cols=75 Identities=23% Similarity=0.377 Sum_probs=65.9
Q ss_pred CCCe-EEEcCCCCCcCHHH----HHHHHhhcC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 008162 39 GTGN-IFIKNLDKSIDHKA----LHDTFSSFG-NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVF 112 (575)
Q Consensus 39 ~~~~-lfV~nLp~~ite~~----L~~~F~~~G-~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~ 112 (575)
++.+ |||+|||.++++++ |+++|+.|| +|++| ++ |+|||.|.+.++|.+|++.|||..+.||.|.
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 3556 88999999999888 558999994 99988 22 9999999999999999999999999999999
Q ss_pred Eeeecchhhh
Q 008162 113 VGHFLRKQER 122 (575)
Q Consensus 113 v~~~~~~~~~ 122 (575)
|.++..+.+.
T Consensus 78 v~~A~~~sd~ 87 (96)
T 2diu_A 78 VSFTPKNREL 87 (96)
T ss_dssp EESSCCSCCC
T ss_pred EEecCCCcce
Confidence 9998766543
No 361
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.38 E-value=8.5e-13 Score=111.39 Aligned_cols=82 Identities=16% Similarity=0.271 Sum_probs=71.3
Q ss_pred cceeEEEecC--CCCCC--------HHHHHHHhhhcCCeeEEEEeeCCC---CCCCceEEEEeCCHHHHHHHHHHhCCce
Q 008162 233 QGLNLYIKNL--GDSID--------DEKLKELFSEFGTITSCKVMRDPS---GISKGSGFVAFSTPEEASRALAEMNGKM 299 (575)
Q Consensus 233 ~~~~l~V~nl--~~~~t--------~~~l~~~F~~~G~v~~~~i~~~~~---g~skg~afV~f~s~~~A~~A~~~lng~~ 299 (575)
++.+|.|.|+ +..+. +++|++.|++||.|.+|+|+++.. +.++||+||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4568999998 33443 379999999999999999998864 3689999999999999999999999999
Q ss_pred ecceeeeeehhccHH
Q 008162 300 IVSKPLYVAVAQRKE 314 (575)
Q Consensus 300 i~g~~l~V~~a~~~~ 314 (575)
++|+.|.|.++....
T Consensus 84 f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 84 FANRVVVTKYCDPDS 98 (105)
T ss_dssp ETTEECEEEEECHHH
T ss_pred eCCCEEEEEEeCHHH
Confidence 999999999987653
No 362
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.38 E-value=1.8e-13 Score=115.34 Aligned_cols=72 Identities=18% Similarity=0.415 Sum_probs=61.9
Q ss_pred EecCCCCCCHHHHHHH-----------h-hhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeee
Q 008162 239 IKNLGDSIDDEKLKEL-----------F-SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306 (575)
Q Consensus 239 V~nl~~~~t~~~l~~~-----------F-~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~ 306 (575)
+.+|++.+++++|++. | ++||.|.+|+|+++.+|.++|||||+|.+.++|.+|++.|||+.++|+.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 3445555566555554 4 999999999999998889999999999999999999999999999999999
Q ss_pred eehh
Q 008162 307 VAVA 310 (575)
Q Consensus 307 V~~a 310 (575)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9875
No 363
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=2.3e-13 Score=111.04 Aligned_cols=77 Identities=21% Similarity=0.463 Sum_probs=65.7
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecc
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 118 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~ 118 (575)
.+++|||+|||.++|+++|+++|+.||.|.+|++..+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.+...
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 4678999999999999999999999999999999875 899999999999999865432 3456899999988766
Q ss_pred hhh
Q 008162 119 KQE 121 (575)
Q Consensus 119 ~~~ 121 (575)
+..
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 364
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=1.9e-12 Score=112.23 Aligned_cols=75 Identities=23% Similarity=0.166 Sum_probs=66.4
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccE-EEEEeCCHHHHHHHHHHhcCCccCC--eeeEEeee
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGF-GFVQFENKESAQNAIDKLNGMLIND--KQVFVGHF 116 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~-afV~F~t~e~A~~Ai~~lng~~i~g--~~v~v~~~ 116 (575)
.-.|||+||++.+|+++|+++|+.||.|.+|++... .|| |||+|++.++|.+|++.|||..|.| +.|.|.++
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 344789999999999999999999999999999763 385 9999999999999999999999987 58999887
Q ss_pred cch
Q 008162 117 LRK 119 (575)
Q Consensus 117 ~~~ 119 (575)
..+
T Consensus 100 k~~ 102 (124)
T 2e5i_A 100 RPT 102 (124)
T ss_dssp SCS
T ss_pred cCC
Confidence 654
No 365
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.37 E-value=1.2e-12 Score=113.55 Aligned_cols=77 Identities=25% Similarity=0.431 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeec
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 117 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~ 117 (575)
...++|||+|| ++|+++|+++|+.||.|.+|++. .++|||||+|.+.++|.+|++.|||..+.|+.|.|.+..
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 35678999996 69999999999999999999996 388999999999999999999999999999999999987
Q ss_pred chhh
Q 008162 118 RKQE 121 (575)
Q Consensus 118 ~~~~ 121 (575)
.+..
T Consensus 110 ~~~~ 113 (121)
T 2bz2_A 110 KQPM 113 (121)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 6543
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.34 E-value=1.5e-12 Score=112.15 Aligned_cols=81 Identities=17% Similarity=0.334 Sum_probs=70.8
Q ss_pred cceeEEEecCC--CCC---CHHHHHHHhhhcCCeeEEEEeeCC-----CCCCCceEEEEeCCHHHHHHHHHHhCCceecc
Q 008162 233 QGLNLYIKNLG--DSI---DDEKLKELFSEFGTITSCKVMRDP-----SGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302 (575)
Q Consensus 233 ~~~~l~V~nl~--~~~---t~~~l~~~F~~~G~v~~~~i~~~~-----~g~skg~afV~f~s~~~A~~A~~~lng~~i~g 302 (575)
++.+|+|+|+- .++ .+++|++.|++||.|.+|+|+.+. ++.++||+||+|.+.++|.+|++.|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 56789999993 222 368999999999999999999874 35678999999999999999999999999999
Q ss_pred eeeeeehhccH
Q 008162 303 KPLYVAVAQRK 313 (575)
Q Consensus 303 ~~l~V~~a~~~ 313 (575)
+.|.|.++...
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999998754
No 367
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=2.8e-12 Score=109.70 Aligned_cols=80 Identities=24% Similarity=0.323 Sum_probs=68.9
Q ss_pred cccceeEEEecCCCCCC-----------HHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCce
Q 008162 231 KFQGLNLYIKNLGDSID-----------DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 299 (575)
Q Consensus 231 ~~~~~~l~V~nl~~~~t-----------~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~ 299 (575)
....++|+|+||-...+ +++|+++|++||.|.+|.| .+. .++|||||+|.+.++|.+|++.|||..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 34567899999954432 5899999999999999966 443 379999999999999999999999999
Q ss_pred ecceeeeeehhccH
Q 008162 300 IVSKPLYVAVAQRK 313 (575)
Q Consensus 300 i~g~~l~V~~a~~~ 313 (575)
+.|+.|.|.++..+
T Consensus 89 ~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 89 FGGRQITAQAWDGT 102 (112)
T ss_dssp ETTEECEEEECCSC
T ss_pred ECCcEEEEEEeCCC
Confidence 99999999998754
No 368
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.30 E-value=4.7e-12 Score=122.14 Aligned_cols=101 Identities=15% Similarity=0.221 Sum_probs=78.4
Q ss_pred CCCccCCeeEEEEeCCCCC--CCCCCCCCeEEEcCCCCCc---------CHHHHHHHHhhcCCeeEEEEeeCCCCCcccE
Q 008162 15 NFTPLNNKSIRIMYSHRDP--SIRKSGTGNIFIKNLDKSI---------DHKALHDTFSSFGNILSCKIATDGSGQSKGF 83 (575)
Q Consensus 15 n~~~i~g~~iri~~s~~~~--~~r~~~~~~lfV~nLp~~i---------te~~L~~~F~~~G~I~~i~v~~~~~g~skG~ 83 (575)
+...+.|+.....+...-. .......++|||+||+.++ ++++|+++|+.||.|.+|+|+. ++||
T Consensus 107 ~~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~ 181 (240)
T 3u1l_A 107 EVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNC 181 (240)
T ss_dssp SSBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTE
T ss_pred cCcccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCE
Confidence 4555567765432221111 1123467899999999998 7999999999999999999986 6999
Q ss_pred EEEEeCCHHHHHHHHHHhcCCcc------------CCeeeEEeeecchh
Q 008162 84 GFVQFENKESAQNAIDKLNGMLI------------NDKQVFVGHFLRKQ 120 (575)
Q Consensus 84 afV~F~t~e~A~~Ai~~lng~~i------------~g~~v~v~~~~~~~ 120 (575)
|||+|.+.++|+.|++.|+|..| .|+.|.|.++....
T Consensus 182 AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 182 GFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp EEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 99999999999999999999998 89999999987543
No 369
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1e-11 Score=106.10 Aligned_cols=82 Identities=23% Similarity=0.321 Sum_probs=70.0
Q ss_pred CCCCCCeEEEcCCCCCc-----------CHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 008162 36 RKSGTGNIFIKNLDKSI-----------DHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGM 104 (575)
Q Consensus 36 r~~~~~~lfV~nLp~~i-----------te~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~ 104 (575)
+...+++|+|+||-... ++++|+++|++||.|.+|.| .+. .++|||||+|.+.++|.+|++.|||.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 55678899999994432 26899999999999999966 543 38999999999999999999999999
Q ss_pred ccCCeeeEEeeecchh
Q 008162 105 LINDKQVFVGHFLRKQ 120 (575)
Q Consensus 105 ~i~g~~v~v~~~~~~~ 120 (575)
.+.|+.|.|.++..+.
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 9999999999876543
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.29 E-value=2e-12 Score=108.95 Aligned_cols=72 Identities=15% Similarity=0.332 Sum_probs=65.2
Q ss_pred EcCCCCCcCHHHHHHHH------------hhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 008162 45 IKNLDKSIDHKALHDTF------------SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVF 112 (575)
Q Consensus 45 V~nLp~~ite~~L~~~F------------~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~ 112 (575)
+.||+..+++++|++.| ++||.|.+|+|..+..+.++|||||+|.+.++|.+|++.|||..+.|+.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 57788888888877666 999999999999987788999999999999999999999999999999999
Q ss_pred Eeee
Q 008162 113 VGHF 116 (575)
Q Consensus 113 v~~~ 116 (575)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8764
No 371
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.28 E-value=9e-12 Score=105.07 Aligned_cols=82 Identities=20% Similarity=0.207 Sum_probs=70.3
Q ss_pred CCCeEEEcCC--CCCcC--------HHHHHHHHhhcCCeeEEEEeeCCC---CCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 008162 39 GTGNIFIKNL--DKSID--------HKALHDTFSSFGNILSCKIATDGS---GQSKGFGFVQFENKESAQNAIDKLNGML 105 (575)
Q Consensus 39 ~~~~lfV~nL--p~~it--------e~~L~~~F~~~G~I~~i~v~~~~~---g~skG~afV~F~t~e~A~~Ai~~lng~~ 105 (575)
+++.|.|+|+ +.++. ++||++.|++||.|.+|+|.++.. +.++|+|||+|++.++|.+|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4677999998 33333 478999999999999999998853 3689999999999999999999999999
Q ss_pred cCCeeeEEeeecchh
Q 008162 106 INDKQVFVGHFLRKQ 120 (575)
Q Consensus 106 i~g~~v~v~~~~~~~ 120 (575)
+.|+.|.|.++....
T Consensus 84 f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 84 FANRVVVTKYCDPDS 98 (105)
T ss_dssp ETTEECEEEEECHHH
T ss_pred eCCCEEEEEEeCHHH
Confidence 999999999876543
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.20 E-value=5.2e-11 Score=101.67 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=67.4
Q ss_pred cceeEEEecCCC--CC--------CHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecc
Q 008162 233 QGLNLYIKNLGD--SI--------DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 302 (575)
Q Consensus 233 ~~~~l~V~nl~~--~~--------t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g 302 (575)
.+.+|.|.|+=. .. .+++|++.|++||.|.+|.|.++. ++||+||+|.+.++|.+|++.|||+.++|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 456899999832 21 136899999999999999997663 59999999999999999999999999999
Q ss_pred eeeeeehhccHH
Q 008162 303 KPLYVAVAQRKE 314 (575)
Q Consensus 303 ~~l~V~~a~~~~ 314 (575)
+.|.|.++....
T Consensus 83 R~i~v~~~~~~~ 94 (114)
T 3s6e_A 83 KMITAAYVPLPT 94 (114)
T ss_dssp EECEEEEECHHH
T ss_pred EEEEEEEEcHHH
Confidence 999999997553
No 373
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.19 E-value=4.4e-11 Score=102.86 Aligned_cols=83 Identities=17% Similarity=0.262 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCC--Cc---CHHHHHHHHhhcCCeeEEEEeeCC-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccC
Q 008162 38 SGTGNIFIKNLDK--SI---DHKALHDTFSSFGNILSCKIATDG-----SGQSKGFGFVQFENKESAQNAIDKLNGMLIN 107 (575)
Q Consensus 38 ~~~~~lfV~nLp~--~i---te~~L~~~F~~~G~I~~i~v~~~~-----~g~skG~afV~F~t~e~A~~Ai~~lng~~i~ 107 (575)
..++.|+|+|+-. ++ .++||++.|++||.|.+|+|..+. ++.++|+|||+|.+.++|.+|++.|||..++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3677899999842 22 368999999999999999999884 3467899999999999999999999999999
Q ss_pred CeeeEEeeecchh
Q 008162 108 DKQVFVGHFLRKQ 120 (575)
Q Consensus 108 g~~v~v~~~~~~~ 120 (575)
|+.|.|.++....
T Consensus 98 GR~i~v~~~~~~~ 110 (118)
T 3ue2_A 98 GRKVVAEVYDQER 110 (118)
T ss_dssp TEECEEEEECHHH
T ss_pred CcEEEEEEcChHh
Confidence 9999999876533
No 374
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.19 E-value=2.6e-11 Score=123.22 Aligned_cols=76 Identities=25% Similarity=0.484 Sum_probs=66.3
Q ss_pred cccceeEEEec--CCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceec---ce--
Q 008162 231 KFQGLNLYIKN--LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SK-- 303 (575)
Q Consensus 231 ~~~~~~l~V~n--l~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~---g~-- 303 (575)
..++.+|||+| |++.+|+++|+++|++||.|.+|.+.. +||||||+|.+.++|.+|++.|||+.+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 44667999999 589999999999999999999987754 4899999999999999999999999983 44
Q ss_pred eeeeehhc
Q 008162 304 PLYVAVAQ 311 (575)
Q Consensus 304 ~l~V~~a~ 311 (575)
.|+|.++.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 68888774
No 375
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=6.7e-11 Score=98.49 Aligned_cols=64 Identities=20% Similarity=0.367 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccH
Q 008162 244 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 313 (575)
Q Consensus 244 ~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~ 313 (575)
..+++++|+++|++||.|.+|+|+ +.++|||||+|.+.++|.+|++.+++ +.|++|.|.|+..+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 568999999999999999999998 36799999999999999999998554 67999999998744
No 376
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.09 E-value=1.3e-10 Score=118.16 Aligned_cols=75 Identities=16% Similarity=0.342 Sum_probs=64.3
Q ss_pred CCCCCeEEEcC--CCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccC---Ce--
Q 008162 37 KSGTGNIFIKN--LDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN---DK-- 109 (575)
Q Consensus 37 ~~~~~~lfV~n--Lp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~---g~-- 109 (575)
...+.+|||+| |+.++|+++|+++|++||.|.+|++.. +||||||+|++.++|++|++.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 45788999999 578999999999999999999987753 6899999999999999999999998772 34
Q ss_pred eeEEeee
Q 008162 110 QVFVGHF 116 (575)
Q Consensus 110 ~v~v~~~ 116 (575)
.+++.+.
T Consensus 90 ~ly~~~~ 96 (345)
T 3tht_A 90 TLYLNFV 96 (345)
T ss_dssp ECEEEEC
T ss_pred EEEEEEe
Confidence 4666654
No 377
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=5.2e-10 Score=93.09 Aligned_cols=65 Identities=15% Similarity=0.312 Sum_probs=56.8
Q ss_pred CCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecchh
Q 008162 50 KSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 120 (575)
Q Consensus 50 ~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~~ 120 (575)
.++++++|+++|+.||.|.+|.|. +.++|||||+|++.++|..|++.+++ +.|+.|.|.+...+.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 579999999999999999999998 35899999999999999999988554 578899998876543
No 378
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.04 E-value=8.4e-10 Score=94.16 Aligned_cols=80 Identities=13% Similarity=0.169 Sum_probs=66.3
Q ss_pred CCCeEEEcCCCCCc----------CHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 008162 39 GTGNIFIKNLDKSI----------DHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIND 108 (575)
Q Consensus 39 ~~~~lfV~nLp~~i----------te~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g 108 (575)
.++.|.|+|+=..- -++||++.|++||.|.+|+|.++. ++|+|||+|.+.++|.+|++.|||..++|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45677888874321 245789999999999999987652 58999999999999999999999999999
Q ss_pred eeeEEeeecchhh
Q 008162 109 KQVFVGHFLRKQE 121 (575)
Q Consensus 109 ~~v~v~~~~~~~~ 121 (575)
+.|.|.++.....
T Consensus 83 R~i~v~~~~~~~y 95 (114)
T 3s6e_A 83 KMITAAYVPLPTY 95 (114)
T ss_dssp EECEEEEECHHHH
T ss_pred EEEEEEEEcHHHH
Confidence 9999998865443
No 379
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=1.3e-09 Score=93.20 Aligned_cols=83 Identities=23% Similarity=0.251 Sum_probs=72.7
Q ss_pred ccccceeEEEecCCCC-CCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCC-HHHHHHHHHHhC--Cceecceee
Q 008162 230 DKFQGLNLYIKNLGDS-IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST-PEEASRALAEMN--GKMIVSKPL 305 (575)
Q Consensus 230 ~~~~~~~l~V~nl~~~-~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s-~~~A~~A~~~ln--g~~i~g~~l 305 (575)
.-..++.|||+||++. ++.++|+++|+.||.|.+|.+..+. ..|||.|.+ .++|..|+..+| +..|.|..+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-----KEGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 4457899999999999 9999999999999999999998883 369999999 899999999995 778899999
Q ss_pred eeehhccHHHHH
Q 008162 306 YVAVAQRKEERR 317 (575)
Q Consensus 306 ~V~~a~~~~~r~ 317 (575)
.+.+..-.+++.
T Consensus 89 ~~evL~GeeE~~ 100 (121)
T 1owx_A 89 TWEVLEGEVEKE 100 (121)
T ss_dssp EEEECCHHHHHH
T ss_pred EEEECCCHHHHH
Confidence 998877665544
No 380
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=2.4e-09 Score=85.72 Aligned_cols=73 Identities=21% Similarity=0.388 Sum_probs=62.8
Q ss_pred ccceeEEEecCC----CCCCH----HHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecce
Q 008162 232 FQGLNLYIKNLG----DSIDD----EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 303 (575)
Q Consensus 232 ~~~~~l~V~nl~----~~~t~----~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~ 303 (575)
.+..||+|.-.+ .++.+ .+|.+.|+.||.|..+++..+ .+||+|.+.++|.+|++ |||..++||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCCe
Confidence 345678887766 34545 678999999999999999987 38999999999999998 999999999
Q ss_pred eeeeehhcc
Q 008162 304 PLYVAVAQR 312 (575)
Q Consensus 304 ~l~V~~a~~ 312 (575)
.|+|+++.+
T Consensus 77 ~LkV~lkt~ 85 (91)
T 2dnr_A 77 TITIALKSP 85 (91)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 999999874
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.73 E-value=1.9e-08 Score=96.58 Aligned_cols=69 Identities=17% Similarity=0.307 Sum_probs=62.0
Q ss_pred CCHHHHHHHhhhcCCeeEEEEeeCC-----CCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhccHH
Q 008162 246 IDDEKLKELFSEFGTITSCKVMRDP-----SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 314 (575)
Q Consensus 246 ~t~~~l~~~F~~~G~v~~~~i~~~~-----~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~~~~ 314 (575)
-.+++|++.|++||.|.++.|.++. ++.++|++||+|.+.++|.+|+..|||+.++||.|.|.+.....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~ 214 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 214 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHH
Confidence 4568999999999999999998553 44899999999999999999999999999999999999987543
No 382
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=2.2e-08 Score=80.47 Aligned_cols=73 Identities=12% Similarity=0.195 Sum_probs=63.0
Q ss_pred cccceeEEEecCCC-----CCCH----HHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceec
Q 008162 231 KFQGLNLYIKNLGD-----SIDD----EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 301 (575)
Q Consensus 231 ~~~~~~l~V~nl~~-----~~t~----~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~ 301 (575)
..+..||+|.-++. ++.+ .+|.+.|+.||.|..+++..|+ +||+|.+.++|.+|++ |||..++
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 45667899998863 2444 5788999999999999999883 9999999999999998 9999999
Q ss_pred ceeeeeehhc
Q 008162 302 SKPLYVAVAQ 311 (575)
Q Consensus 302 g~~l~V~~a~ 311 (575)
||.|+|++..
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999999865
No 383
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=6e-08 Score=82.84 Aligned_cols=80 Identities=19% Similarity=0.181 Sum_probs=68.1
Q ss_pred cCCceEEEeCCCcC-CCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCC-HHHHHHHHHHHC--CCeeCCeeEEE
Q 008162 129 TKFNNVFVKNLDES-TTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN-ADDAAKAVEALN--GKKFDDREWYV 204 (575)
Q Consensus 129 ~~~~~v~V~nLp~~-~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~-~e~A~~Ai~~l~--~~~~~g~~l~v 204 (575)
...+.|+|+||+++ +++++|+++|+.||.|..|.+..+.. +|||.|.+ .++|..|++.++ +..|.|..+.+
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 44578999999999 99999999999999999999987633 69999999 899999999984 77788888888
Q ss_pred cccccchhH
Q 008162 205 GKAQKKSER 213 (575)
Q Consensus 205 ~~a~~~~~~ 213 (575)
.......+.
T Consensus 91 evL~GeeE~ 99 (121)
T 1owx_A 91 EVLEGEVEK 99 (121)
T ss_dssp EECCHHHHH
T ss_pred EECCCHHHH
Confidence 776654443
No 384
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=5.2e-08 Score=78.00 Aligned_cols=70 Identities=21% Similarity=0.335 Sum_probs=59.2
Q ss_pred ceEEEeCCC----cCCCH----HHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCCeeEE
Q 008162 132 NNVFVKNLD----ESTTD----EDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 203 (575)
Q Consensus 132 ~~v~V~nLp----~~~te----e~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g~~l~ 203 (575)
.+|+|.-.+ .++.+ .+|.+.|+.||.|..+++..| .+||+|.+.++|.+|++ |+|..+.||.|.
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLNRTIT 79 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETTEEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCCeEEE
Confidence 456666655 34444 679999999999999999987 48999999999999997 999999999999
Q ss_pred Eccccc
Q 008162 204 VGKAQK 209 (575)
Q Consensus 204 v~~a~~ 209 (575)
|..+.+
T Consensus 80 V~lkt~ 85 (91)
T 2dnr_A 80 IALKSP 85 (91)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 988764
No 385
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=1.4e-07 Score=75.87 Aligned_cols=70 Identities=20% Similarity=0.356 Sum_probs=59.7
Q ss_pred CCCeEEEcCCCCC------cC---HHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCe
Q 008162 39 GTGNIFIKNLDKS------ID---HKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDK 109 (575)
Q Consensus 39 ~~~~lfV~nLp~~------it---e~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~ 109 (575)
..+||+|.-++.+ .+ -.+|.+.|+.||.|..+++..|. +||+|.+.++|.+||+ |||..+.||
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 4578999988743 22 15588999999999999999873 9999999999999998 999999999
Q ss_pred eeEEeee
Q 008162 110 QVFVGHF 116 (575)
Q Consensus 110 ~v~v~~~ 116 (575)
.+.|...
T Consensus 86 ~L~V~~k 92 (95)
T 1ufw_A 86 AVKISGP 92 (95)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9999764
No 386
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.50 E-value=7.5e-07 Score=85.34 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=61.4
Q ss_pred cCHHHHHHHHhhcCCeeEEEEeeCC-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEEeeecchh
Q 008162 52 IDHKALHDTFSSFGNILSCKIATDG-----SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 120 (575)
Q Consensus 52 ite~~L~~~F~~~G~I~~i~v~~~~-----~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v~~~~~~~ 120 (575)
-.+++|++.|++||.|.+++|..+. ++.++|++||+|.+.++|.+|++.|||..++||.|.+..+....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~ 214 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 214 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHH
Confidence 4577899999999999999998663 34899999999999999999999999999999999999876543
No 387
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.36 E-value=2.8e-06 Score=69.59 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=67.1
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhc-----CCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeee
Q 008162 234 GLNLYIKNLGDSIDDEKLKELFSEF-----GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308 (575)
Q Consensus 234 ~~~l~V~nl~~~~t~~~l~~~F~~~-----G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~ 308 (575)
..+|-+-|||+.+++..|+.+++.| |.|..+.+..| -+=|+|+|.+...|.+|.-.|+|..|.|+.|+|.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 5689999999999999999999999 99999999998 4459999999999999999999999999999987
Q ss_pred hhc
Q 008162 309 VAQ 311 (575)
Q Consensus 309 ~a~ 311 (575)
-..
T Consensus 96 Tv~ 98 (117)
T 2l9w_A 96 TIN 98 (117)
T ss_dssp CHH
T ss_pred CHH
Confidence 543
No 388
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.08 E-value=1.6e-05 Score=65.14 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=67.1
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhc-----CCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSF-----GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~-----G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v 113 (575)
..++|-|-|||.+++...|+.++..+ |.|..|.+..|.. =|+|+|++..+|-+|.-.|+|+.|.|+++.+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~-----GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN-----GAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT-----EEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC-----ceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 36689999999999999999999999 9999999998743 3999999999999999999999999999999
Q ss_pred eeec
Q 008162 114 GHFL 117 (575)
Q Consensus 114 ~~~~ 117 (575)
+-..
T Consensus 95 gTv~ 98 (117)
T 2l9w_A 95 GTIN 98 (117)
T ss_dssp ECHH
T ss_pred cCHH
Confidence 7643
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.51 E-value=0.00014 Score=59.42 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=62.8
Q ss_pred ceeEEEecCCCCCC-----HHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeee
Q 008162 234 GLNLYIKNLGDSID-----DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 308 (575)
Q Consensus 234 ~~~l~V~nl~~~~t-----~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~ 308 (575)
.++|+|.||+.++- .+.++++|..|+.+.+...++.- .-..|.|.+.++|.+|-..||+..++|+.++|.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----KRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----TEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----eEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 45899999987762 26789999999999998877652 247899999999999999999999999999999
Q ss_pred hhc
Q 008162 309 VAQ 311 (575)
Q Consensus 309 ~a~ 311 (575)
+++
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 987
No 390
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=0.00097 Score=54.23 Aligned_cols=89 Identities=16% Similarity=0.213 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHHhh---c--CCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeE
Q 008162 38 SGTGNIFIKNLDKSIDHKALHDTFSS---F--GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVF 112 (575)
Q Consensus 38 ~~~~~lfV~nLp~~ite~~L~~~F~~---~--G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~ 112 (575)
+...+|.|.|||.+++++.|.-+|+. - |.|.++.... +-|+|+|.+.+.|++.+++ ..+.+.+..+.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 34568999999999999999999986 2 4788777643 4699999999999999964 35677888888
Q ss_pred EeeecchhhhhhhhhccCCceEEEeCCCcCCC
Q 008162 113 VGHFLRKQERETVAIKTKFNNVFVKNLDESTT 144 (575)
Q Consensus 113 v~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t 144 (575)
|.++..+ ...+|++.+|++.++
T Consensus 78 V~P~~~~----------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPR----------APARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCC----------CCCCCCCCSCCCCCC
T ss_pred EEcCCCC----------CcceEeeecCCCCCC
Confidence 8775543 335789999998764
No 391
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.08 E-value=0.0011 Score=54.22 Aligned_cols=74 Identities=12% Similarity=0.098 Sum_probs=62.4
Q ss_pred CCCeEEEcCCCCCc-C----HHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcCCccCCeeeEE
Q 008162 39 GTGNIFIKNLDKSI-D----HKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 113 (575)
Q Consensus 39 ~~~~lfV~nLp~~i-t----e~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g~~v~v 113 (575)
..++|+|.||+.+| + .+.++++|..|+++.+....++ =+-..|.|.+.++|.+|...|++..+.|+.+.|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 35689999999866 2 2567899999999999888874 335899999999999999999999999998888
Q ss_pred eeec
Q 008162 114 GHFL 117 (575)
Q Consensus 114 ~~~~ 117 (575)
-...
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 6655
No 392
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.99 E-value=0.0031 Score=51.23 Aligned_cols=70 Identities=23% Similarity=0.354 Sum_probs=57.4
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhh-----cCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeee
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSE-----FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 306 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~-----~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~ 306 (575)
..+.+|.|.|||..++++.|.-+|+. -|.|.+++... +-|+|+|.+.+.|++.++ -....+++.+|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 34679999999999999999999976 35788888754 469999999999999986 335677788888
Q ss_pred eeh
Q 008162 307 VAV 309 (575)
Q Consensus 307 V~~ 309 (575)
|.-
T Consensus 78 V~P 80 (104)
T 2dhx_A 78 LRP 80 (104)
T ss_dssp EEE
T ss_pred EEc
Confidence 874
No 393
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.84 E-value=0.0032 Score=50.51 Aligned_cols=68 Identities=13% Similarity=0.279 Sum_probs=55.7
Q ss_pred CeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCC---CCCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 008162 41 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG---SGQSKGFGFVQFENKESAQNAIDKLNGMLIND 108 (575)
Q Consensus 41 ~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~---~g~skG~afV~F~t~e~A~~Ai~~lng~~i~g 108 (575)
..|-|++||+++|++++.+.++.+..+.-...+... ....-.-|||.|.+.+++....+.++|..+-+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 468999999999999999999999887777776652 12233459999999999999999999987643
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.84 E-value=0.005 Score=49.42 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=46.0
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 102 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~ln 102 (575)
.+-++| +.|++....||.++|+.||.| .|+.+.| ..|||.|.+.+.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET------TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 444556 999999999999999999966 5777765 369999999999999998653
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.50 E-value=0.0083 Score=50.37 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=59.1
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecc-eeeeeehh
Q 008162 232 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS-KPLYVAVA 310 (575)
Q Consensus 232 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g-~~l~V~~a 310 (575)
...+.|.|-+++... ...|...|++||+|.+..... ...+-.|.|.+..+|++||. .||..++| -.|-|...
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-----TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 345689999999886 566779999999999888622 25699999999999999997 79999975 55556654
Q ss_pred ccH
Q 008162 311 QRK 313 (575)
Q Consensus 311 ~~~ 313 (575)
..+
T Consensus 95 ~d~ 97 (119)
T 1wwh_A 95 IDK 97 (119)
T ss_dssp CCH
T ss_pred CCH
Confidence 443
No 396
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.40 E-value=0.0076 Score=48.37 Aligned_cols=55 Identities=20% Similarity=0.372 Sum_probs=44.0
Q ss_pred ceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHC
Q 008162 132 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193 (575)
Q Consensus 132 ~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~ 193 (575)
.+||+-++|++|...||.++|+.||-|. |.-+.| ..|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l~FP~ewKt~DI~~lFs~fggv~-I~WidD------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHVTFPKEWKTSDLYQLFSAFGNIQ-ISWIDD------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEEECCTTCCHHHHHHHHTTTCSCC-CEEEET------TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEEeCChhhhhHHHHHHhhccCCEE-EEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 4455559999999999999999998543 444444 279999999999999998763
No 397
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.38 E-value=0.016 Score=46.36 Aligned_cols=67 Identities=12% Similarity=0.202 Sum_probs=56.0
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC--CC-CCCceEEEEeCCHHHHHHHHHHhCCceec
Q 008162 235 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP--SG-ISKGSGFVAFSTPEEASRALAEMNGKMIV 301 (575)
Q Consensus 235 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~--~g-~skg~afV~f~s~~~A~~A~~~lng~~i~ 301 (575)
++|.|++||...|++++.+.++....+........+ .+ ..-.-|+|.|.+.+++....+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 479999999999999999999999887777665543 11 23366899999999999999999999875
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.11 E-value=0.007 Score=51.55 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=57.1
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEE-EeeCC-------------CC-CcccEEEEEeCCHHHHHHHHHHhcC
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK-IATDG-------------SG-QSKGFGFVQFENKESAQNAIDKLNG 103 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~-v~~~~-------------~g-~skG~afV~F~t~e~A~~Ai~~lng 103 (575)
+...|.|-+.|. .....|.+.|++||.|++-. ...+. .. ....+..|+|.+..+|.+||.+ ||
T Consensus 6 ~e~~VtVFGFp~-~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG 83 (132)
T 3p3d_A 6 GELAILVFGYPE-TMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NG 83 (132)
T ss_dssp --CEEEEECCCG-GGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TT
T ss_pred CceEEEEEecCH-HHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CC
Confidence 455688999976 45667889999999997721 11100 00 1356889999999999999965 99
Q ss_pred CccCCeeeEEeeecch
Q 008162 104 MLINDKQVFVGHFLRK 119 (575)
Q Consensus 104 ~~i~g~~v~v~~~~~~ 119 (575)
..|+|.-|-|.++.+.
T Consensus 84 ~ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTKD 99 (132)
T ss_dssp CEETTEECEEEECCHH
T ss_pred eEeCcEEEEEEECCHH
Confidence 9999988888777543
No 399
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.08 E-value=0.022 Score=47.75 Aligned_cols=75 Identities=19% Similarity=0.223 Sum_probs=58.1
Q ss_pred cCCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCeeCC-eeEEEccc
Q 008162 129 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD-REWYVGKA 207 (575)
Q Consensus 129 ~~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~~~~~~g-~~l~v~~a 207 (575)
...+.|.|-++|... ...|.+.|++||.|.+.... ....+-.|.|.+..+|++|+. .||..+.+ -.|-|.+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~-----~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS-----NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC-----SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC-----CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 445789999999985 66788899999999987762 124588999999999999996 59999975 44556554
Q ss_pred ccc
Q 008162 208 QKK 210 (575)
Q Consensus 208 ~~~ 210 (575)
..+
T Consensus 95 ~d~ 97 (119)
T 1wwh_A 95 IDK 97 (119)
T ss_dssp CCH
T ss_pred CCH
Confidence 433
No 400
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.70 E-value=0.014 Score=47.05 Aligned_cols=53 Identities=28% Similarity=0.412 Sum_probs=44.1
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhC
Q 008162 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 296 (575)
Q Consensus 236 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~ln 296 (575)
.++| ++|.++.-.||.++|+.|| -..|+.+.| ..|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 3555 9999999999999999998 345565655 269999999999999999764
No 401
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.63 E-value=0.017 Score=46.47 Aligned_cols=54 Identities=20% Similarity=0.366 Sum_probs=43.5
Q ss_pred eEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHHHC
Q 008162 133 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 193 (575)
Q Consensus 133 ~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~l~ 193 (575)
+||+-++|++|...||.++|+.||.| .|.-+.| ..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEEE-EEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccCCE-EEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 45555999999999999999999932 3444444 269999999999999998775
No 402
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.11 E-value=0.02 Score=48.76 Aligned_cols=77 Identities=23% Similarity=0.348 Sum_probs=56.6
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEE-EEeeCCC-------------C-CCCceEEEEeCCHHHHHHHHHHhCCce
Q 008162 235 LNLYIKNLGDSIDDEKLKELFSEFGTITSC-KVMRDPS-------------G-ISKGSGFVAFSTPEEASRALAEMNGKM 299 (575)
Q Consensus 235 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~-~i~~~~~-------------g-~skg~afV~f~s~~~A~~A~~~lng~~ 299 (575)
+.|.|-+.|.+.+.. +-+.|++||.|.+. .+..+.. + ...++.-|+|.+..+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 467777887766655 66899999998773 2211000 0 125788999999999999997 89999
Q ss_pred ecceeeeeehhccH
Q 008162 300 IVSKPLYVAVAQRK 313 (575)
Q Consensus 300 i~g~~l~V~~a~~~ 313 (575)
+.|..|-|....+.
T Consensus 86 i~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 86 FNGVLLGVIPYTKD 99 (132)
T ss_dssp ETTEECEEEECCHH
T ss_pred eCcEEEEEEECCHH
Confidence 99998878877543
No 403
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.98 E-value=0.016 Score=46.77 Aligned_cols=69 Identities=12% Similarity=0.213 Sum_probs=49.0
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeC--CC-CCcccEEEEEeCCHHHHHHHHHHhcCCccCC
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD--GS-GQSKGFGFVQFENKESAQNAIDKLNGMLIND 108 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~--~~-g~skG~afV~F~t~e~A~~Ai~~lng~~i~g 108 (575)
+-.|-|+.||++.|++++.+.++.+=.+.....+.. .. ...-.-|||.|.+.++.....+..+|..+-+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 456999999999999998887776544322222222 11 1122349999999999999999999977643
No 404
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.65 E-value=0.017 Score=60.60 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=43.0
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 008162 39 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDK 100 (575)
Q Consensus 39 ~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~ 100 (575)
..++|+|. .+..+++++|.+.|+.||+|.++....+ ..-||.|+|.+.+++..+++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~----~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES----FGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS----SSEEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc----CCeEEEEEeCCHHHHHHHHhc
Confidence 45679998 6999999999999999999999988764 336999999999999977643
No 405
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.61 E-value=0.15 Score=41.07 Aligned_cols=68 Identities=12% Similarity=0.200 Sum_probs=50.7
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCC--CCC-CCceEEEEeCCHHHHHHHHHHhCCceec
Q 008162 234 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP--SGI-SKGSGFVAFSTPEEASRALAEMNGKMIV 301 (575)
Q Consensus 234 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~--~g~-skg~afV~f~s~~~A~~A~~~lng~~i~ 301 (575)
+.+|.|++||...|++++.+.++..-.++.......+ .+. .-.-|+|.|.+.++.....+..+|..+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 3479999999999999999888876554333322221 111 2255899999999999999999998874
No 406
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.61 E-value=0.071 Score=55.83 Aligned_cols=56 Identities=14% Similarity=0.319 Sum_probs=42.3
Q ss_pred CCceEEEeCCCcCCCHHHHHHHhccCCCeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHH
Q 008162 130 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 190 (575)
Q Consensus 130 ~~~~v~V~nLp~~~tee~L~~~F~~~G~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~ 190 (575)
..++|+|. .+..+++.+|.++|+.||.|.++....+ .| -|+.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-~g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-FG---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-SS---EEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-CC---eEEEEEeCCHHHHHHHHh
Confidence 34789998 7999999999999999999999887754 22 599999999999987764
No 407
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=81.90 E-value=3.5 Score=43.78 Aligned_cols=66 Identities=23% Similarity=0.298 Sum_probs=49.1
Q ss_pred eCCCCCCCCCCCCCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 008162 28 YSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 103 (575)
Q Consensus 28 ~s~~~~~~r~~~~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng 103 (575)
++..|+...+ ...++|+ ++..+...+|.++|+.||.| +|+.+.| ..|||.|.+.+.|..+++.++.
T Consensus 430 l~g~d~~~~R--~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 430 LEGPDLQPKR--DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp SSSCCCCCCG--GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCc--CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHHh
Confidence 3444554433 3345565 89999999999999999965 5655533 4699999999999999988753
No 408
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=74.05 E-value=7 Score=41.42 Aligned_cols=53 Identities=30% Similarity=0.460 Sum_probs=43.1
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhC
Q 008162 236 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 296 (575)
Q Consensus 236 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~ln 296 (575)
.++|+ ++..|...+|.+.|+.||.| +|+.+.+ ..|||.|.+.+.|..+++.++
T Consensus 442 vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 442 VLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp EEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred EEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 45555 88999999999999999953 5554443 479999999999999999885
No 409
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=45.74 E-value=17 Score=27.15 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHhhhcCC-----eeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHhCCceecceeeeeehhc
Q 008162 244 DSIDDEKLKELFSEFGT-----ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 311 (575)
Q Consensus 244 ~~~t~~~l~~~F~~~G~-----v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~lng~~i~g~~l~V~~a~ 311 (575)
..++..+|..++..-+. |-.++|..+ |.||.-.. +.|..+++.|++..+.|+.+.|..++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCC-------cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 45566677777765443 566777655 89999977 66889999999999999999988664
No 410
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=36.31 E-value=1.4e+02 Score=23.12 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=25.5
Q ss_pred CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 008162 66 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 103 (575)
Q Consensus 66 ~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~lng 103 (575)
.|.+|.+... -.||.||++...++...+++...|
T Consensus 39 ~i~~v~vP~~----fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASES----LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECTT----STTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEecc----cCCEEEEEEecchhHHHHHHCCCC
Confidence 4666666542 789999999999988888865433
No 411
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.16 E-value=92 Score=24.13 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=40.0
Q ss_pred EEEcCCCCCcCHHHHHHHHhh-cC-CeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHH
Q 008162 43 IFIKNLDKSIDHKALHDTFSS-FG-NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDK 100 (575)
Q Consensus 43 lfV~nLp~~ite~~L~~~F~~-~G-~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~ 100 (575)
-++--.+...+..+|++.++. || .|.+|....-+.|. .-|||++....+|.+...+
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~--KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGE--KKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSC--EEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCc--eEEEEEcCCCCcHHHHHHh
Confidence 344445678999999998875 55 67777777655443 3499999988888776554
No 412
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=27.91 E-value=2.1e+02 Score=22.08 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=46.5
Q ss_pred CCeEEEcCCCCCcCHHHHHHHHhhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 008162 40 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 101 (575)
Q Consensus 40 ~~~lfV~nLp~~ite~~L~~~F~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A~~Ai~~l 101 (575)
.+-|.|-|+|..+-..++.-.....|--.-|..+ .|.|.+.|.+.++-..|+.+|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHH
Confidence 4568889999999999998888888877667664 357999999999999999987
No 413
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=27.16 E-value=93 Score=27.51 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=37.1
Q ss_pred eEEEcCCCCC---------cCHHHHHHHH--hhcCCeeEEEEeeCCCCCcccEEEEEeCCHHHH
Q 008162 42 NIFIKNLDKS---------IDHKALHDTF--SSFGNILSCKIATDGSGQSKGFGFVQFENKESA 94 (575)
Q Consensus 42 ~lfV~nLp~~---------ite~~L~~~F--~~~G~I~~i~v~~~~~g~skG~afV~F~t~e~A 94 (575)
.+.|-|++.. ...++|++.| +.|.++ .++..-+..| ..|++.|.|.+.-+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~~G-h~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNYLG-HSGTAIVEFNKDWNG 75 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECSSB-EEEEEEEECCSSHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccCCC-CceeEEEEecCChHH
Confidence 4677777762 3457899977 999776 4666666666 788999999885443
No 414
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.54 E-value=1.5e+02 Score=22.90 Aligned_cols=57 Identities=16% Similarity=0.273 Sum_probs=39.6
Q ss_pred eEEEeCCCcCCCHHHHHHHhcc-CC-CeeEEEEEeCCCCCcceeEEEEeCCHHHHHHHHHH
Q 008162 133 NVFVKNLDESTTDEDLKKIFGE-YG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 191 (575)
Q Consensus 133 ~v~V~nLp~~~tee~L~~~F~~-~G-~i~~i~i~~d~~g~skg~afV~F~~~e~A~~Ai~~ 191 (575)
+-|+-......++.+|++.++. |+ .|.++..+....|. .-|||++....+|......
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~--KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGE--KKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSC--EEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCc--eEEEEEcCCCCcHHHHHHh
Confidence 4555666788999999988876 45 57777776654443 3489999877777665443
No 415
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=24.52 E-value=36 Score=23.43 Aligned_cols=22 Identities=14% Similarity=0.347 Sum_probs=19.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 008162 526 TEVLHLLESPEALKAKVAEAME 547 (575)
Q Consensus 526 ~~~~~~~~~~~~l~~~~~~a~~ 547 (575)
..|++||.+.+.+-.+|-||+-
T Consensus 18 qaLihLIqnD~~Fl~~IHeAYl 39 (51)
T 2wx3_A 18 DTLIHLIKNDSSFLSTLHEVYL 39 (51)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHHH
Confidence 4589999999999999999973
No 416
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=24.27 E-value=95 Score=27.45 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=36.8
Q ss_pred eeEEEecCCC-C--------CCHHHHHHHh--hhcCCeeEEEEeeCCCCCCCceEEEEeCCHHH
Q 008162 235 LNLYIKNLGD-S--------IDDEKLKELF--SEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 287 (575)
Q Consensus 235 ~~l~V~nl~~-~--------~t~~~l~~~F--~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~ 287 (575)
..+.|.|++. . .+..+|++.| +.|..+ .++.+.+..|. +|++.|.|.+.-.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~~Gh-~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNYLGH-SGTAIVEFNKDWN 74 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECSSBE-EEEEEEECCSSHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccCCCC-ceeEEEEecCChH
Confidence 3567788876 2 3447899977 999665 47767776664 7899999997543
No 417
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=22.31 E-value=2.7e+02 Score=21.45 Aligned_cols=56 Identities=16% Similarity=0.281 Sum_probs=45.9
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeeCCCCCCCceEEEEeCCHHHHHHHHHHh
Q 008162 233 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 295 (575)
Q Consensus 233 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~~~i~~~~~g~skg~afV~f~s~~~A~~A~~~l 295 (575)
+.|-|-|-|+|..+-..++.-.....|---.|..+ .|.|.+.|.+.++-+-|+..|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHH
Confidence 46778899999999988887777777766666654 347999999999999999887
No 418
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=20.98 E-value=90 Score=22.94 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=30.9
Q ss_pred cchhhh-hhcCCChHHHHHhcCChHHHHHHHHHHHHHHHHHHHh
Q 008162 513 AAKVTG-MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 555 (575)
Q Consensus 513 a~kitg-m~l~~~~~~~~~~~~~~~~l~~~~~~a~~~l~~~~~~ 555 (575)
...|+| .||.|+..+|-.|==..---+.||-.|+.-|+....+
T Consensus 30 ~~~i~g~~Ll~l~~~dL~~lGI~~~g~r~kil~~i~~L~~~~ek 73 (74)
T 2gle_A 30 AQNISGEQLLQLDGNKLKALGMTSSQDRALVKKKLKEMKMSLEK 73 (74)
T ss_dssp TTTCCHHHHHTCCHHHHHTTTCCCHHHHHHHHHHHHSHHHHHHH
T ss_pred HcCCCHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 346777 6888999997776333344688899999988876543
No 419
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=20.15 E-value=1.2e+02 Score=17.89 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008162 536 EALKAKVAEAMEVLRSVAQ 554 (575)
Q Consensus 536 ~~l~~~~~~a~~~l~~~~~ 554 (575)
++|+.||+|--.+|+....
T Consensus 9 ~lLKKKIEEQr~i~~~~~H 27 (29)
T 3lcn_C 9 KLLKKKIEEQREILQKTHH 27 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 5789999999999987653
No 420
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=20.03 E-value=1.2e+02 Score=25.48 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=32.7
Q ss_pred EcCCCCCcCHHHHHHHHh-hcC--CeeEEEEeeCC-----------CCCcccEEEEEeCCH
Q 008162 45 IKNLDKSIDHKALHDTFS-SFG--NILSCKIATDG-----------SGQSKGFGFVQFENK 91 (575)
Q Consensus 45 V~nLp~~ite~~L~~~F~-~~G--~I~~i~v~~~~-----------~g~skG~afV~F~t~ 91 (575)
+..+...++++++++.+. ..+ .|.++.+-... ...+.+|.|+.|.|-
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~G 128 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTTG 128 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTTC
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeCC
Confidence 777888999999999995 444 56666553321 133577888988763
Done!