Citrus Sinensis ID: 008162
Local Sequence Feature Prediction
| Prediction and Method | Result |
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Function Prediction
Annotation transfered from Closely Related SWISS-PROT Entries 
| Annotation | Function Description | Confidence Level | Reference Protein |
| Polyadenylate-binding protein 1-A | Binds the poly(A) tail of mRNA. Appears to be an important mediator of the multiple roles of the poly(A) tail in mRNA biogenesis, stability and translation. | probable | Q54BM2 |
| Polyadenylate-binding protein 1 | Binds the poly(A) tail of mRNA. May be involved in cytoplasmic regulatory processes of mRNA metabolism such as pre-mRNA splicing. Its function in translational initiation regulation can either be enhanced by PAIP1 or repressed by PAIP2. Can probably bind to cytoplasmic RNA sequences other than poly(A) in vivo. Involved in translationally coupled mRNA turnover. Implicated with other RNA-binding proteins in the cytoplasmic deadenylation/translational and decay interplay of the FOS mRNA mediated by the major coding-region determinant of instability (mCRD) domain. Involved in regulation of nonsense-mediated decay (NMD) of mRNAs containing premature stop codons; for the recognition of premature termination codons (PTC) and initiation of NMD a competitive interaction between UPF1 and PABPC1 with the ribosome-bound release factors is proposed. | probable | Q5R8F7 |
| Polyadenylate-binding protein 1 | Binds the poly(A) tail of mRNA. May be involved in cytoplasmic regulatory processes of mRNA metabolism such as pre-mRNA splicing. Its function in translational initiation regulation can either be enhanced by PAIP1 or repressed by PAIP2. Can probably bind to cytoplasmic RNA sequences other than poly(A) in vivo. Involved in translationally coupled mRNA turnover. Implicated with other RNA-binding proteins in the cytoplasmic deadenylation/translational and decay interplay of the FOS mRNA mediated by the major coding-region determinant of instability (mCRD) domain. Involved in regulation of nonsense-mediated decay (NMD) of mRNAs containing premature stop codons; for the recognition of premature termination codons (PTC) and initiation of NMD a competitive interaction between UPF1 and PABPC1 with the ribosome-bound release factors is proposed. | probable | P61286 |
Prediction of Enzyme Commission Number
No EC number assigned to the protein, probably not an enzyme!
Spatial Structural Prediction
Structural Models Based on Templates
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Template: 4F02, chain A Confidence level:very confident Coverage over the Query: 40-216 View the alignment between query and template View the model in PyMOL |
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Template: 4F02, chain A Confidence level:very confident Coverage over the Query: 131-216,233-320 View the alignment between query and template View the model in PyMOL |
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Template: 2GHP, chain A Confidence level:very confident Coverage over the Query: 1-210 View the alignment between query and template View the model in PyMOL |
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Template: 1G9L, chain A Confidence level:very confident Coverage over the Query: 477-557 View the alignment between query and template View the model in PyMOL |
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Template: 1M2V, chain B Confidence level:probable Coverage over the Query: 368-380 View the alignment between query and template View the model in PyMOL |