BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008163
(575 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 358 bits (918), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 211/551 (38%), Positives = 298/551 (54%), Gaps = 58/551 (10%)
Query: 21 HDFCACQKAAPNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGS 80
HDF SF ++AT + YDY+I+GGGT+GCPLAATLS+ VL+LERG
Sbjct: 7 HDFSYL-------SFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSL 59
Query: 81 PYGNPNITNLGSFGAALS-DLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRA-- 137
P PN+ F L + +P +RF+SEDG+ N R RVLGG S +NAG Y RA
Sbjct: 60 PTAYPNVLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANT 119
Query: 138 APYYVREVGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMY 197
+ Y V WD LVN++Y+WVE + ++P + WQS + +E GV P +GF+ DH
Sbjct: 120 SIYSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEE 179
Query: 198 GTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD 257
GT+I G+ FD G RH A +LL N + L + +HASV K++F A GV++RD
Sbjct: 180 GTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIF--SNAPGLTATGVIYRD 237
Query: 258 ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGM 309
+ G H+A++++ K E+IVSAG +G+PQLL+LSG + NI VVL P VGQ +
Sbjct: 238 SNGTPHQAFVRS--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFL 295
Query: 310 SDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQ 369
DNP N I + P P+E +++ V+GI+ + + + F+ + +G F
Sbjct: 296 HDNPRNFINILPPNPIEPTIVTVLGISN--DFYQCS----FSSLPFTTPPFGFF------ 343
Query: 370 LSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELR-TRNPNDNPS 428
P P L + F KV GP+S G L L+ + N +P+
Sbjct: 344 -----PSSSYP------------LPNSTF--AHFASKVAGPLSYGSLTLKSSSNVRVSPN 384
Query: 429 VTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMTASAPVNLLPRHS 488
V FNY+ DL CV G E + N+ LP+
Sbjct: 385 VKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIP----LPKDQ 440
Query: 489 NASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQA 548
+ E FCR++V + WHYHGGC VGKV+D D++V G++ALRV+DGSTF Y+P ++PQ
Sbjct: 441 TDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPASHPQG 500
Query: 549 TVMMLGRYVNL 559
+MLGRYV +
Sbjct: 501 FYLMLGRYVGI 511
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 357 bits (916), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 211/551 (38%), Positives = 298/551 (54%), Gaps = 58/551 (10%)
Query: 21 HDFCACQKAAPNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGS 80
HDF SF ++AT + YDY+I+GGGT+GCPLAATLS+ VL+LERG
Sbjct: 7 HDFSYL-------SFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSL 59
Query: 81 PYGNPNITNLGSFGAALS-DLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRA-- 137
P PN+ F L + +P +RF+SEDG+ N R RVLGG S +NAG Y RA
Sbjct: 60 PTAYPNVLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANT 119
Query: 138 APYYVREVGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMY 197
+ Y V WD LVN++Y+WVE + ++P + WQS + +E GV P +GF+ DH
Sbjct: 120 SIYSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEE 179
Query: 198 GTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD 257
GT+I G+ FD G RH A +LL N + L + +HASV K++F A GV++RD
Sbjct: 180 GTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIF--SNAPGLTATGVIYRD 237
Query: 258 ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGM 309
+ G H+A++++ K E+IVSAG +G+PQLL+LSG + NI VVL P VGQ +
Sbjct: 238 SNGTPHQAFVRS--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFL 295
Query: 310 SDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQ 369
DNP N I + P P+E +++ V+GI+ + + + F+ + +G F
Sbjct: 296 HDNPRNFINILPPNPIEPTIVTVLGISN--DFYQCS----FSSLPFTTPPFGFF------ 343
Query: 370 LSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELR-TRNPNDNPS 428
P P L + F KV GP+S G L L+ + N +P+
Sbjct: 344 -----PSSSYP------------LPNSTF--AHFASKVAGPLSYGSLTLKSSSNVRVSPN 384
Query: 429 VTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMTASAPVNLLPRHS 488
V FNY+ DL CV G E + N+ LP+
Sbjct: 385 VKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIP----LPKDQ 440
Query: 489 NASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQA 548
+ E FCR++V + WHYHGGC VGKV+D D++V G++ALRV+DGSTF Y+P ++PQ
Sbjct: 441 TDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPASHPQG 500
Query: 549 TVMMLGRYVNL 559
+MLGRYV +
Sbjct: 501 FYLMLGRYVGI 511
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 348 bits (892), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 208/549 (37%), Positives = 292/549 (53%), Gaps = 57/549 (10%)
Query: 21 HDFCACQKAAPNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGS 80
HDF SF ++AT + YDY+I+GGGT+GCPLAATLS+ VL+LERG
Sbjct: 7 HDFSYL-------SFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGTL 59
Query: 81 PYGNPNITNLGSFGAALS-DLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAP 139
P PN+ F L + +P +RF+S DG+ + R RVLGG S +NAG Y RA
Sbjct: 60 PTAYPNLLTSDGFIYNLQQEDDGQTPVERFVSGDGIDDVRGRVLGGTSMINAGVYARANT 119
Query: 140 --YYVREVGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMY 197
+ + WD LVN++Y WVE + ++P + WQS + +E GVLP NGF+ DH
Sbjct: 120 KIFSASGIEWDMDLVNQTYDWVEDTIVYKPDKQAWQSLTKTAFLEAGVLPDNGFSLDHEA 179
Query: 198 GTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD 257
GT++ G+ FD NG RH + +LL +P+ L + +HASV K++F + A GV+++D
Sbjct: 180 GTRLTGSTFDNNGTRHASDELLNKGDPNNLRVAVHASVEKIIFS-SNSSGVTAIGVIYKD 238
Query: 258 ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGM 309
+ G H+A+++ + E+IVSAG +GSPQLL+LSG + NI VVL P VGQ +
Sbjct: 239 SNGTPHQAFVRG--EGEVIVSAGPIGSPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFL 296
Query: 310 SDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQ 369
DNP N I + P P+E S + V+GIT NF S S +
Sbjct: 297 HDNPRNFINILPPNPIEPSTVTVLGITS-----------NFYQCSFSSLPF--------- 336
Query: 370 LSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRT-RNPNDNPS 428
+PP P L + F + KV GP+S G + L + + P+
Sbjct: 337 --SIPPFAFFPNP-------TYPLPNSTF--AHFVNKVPGPLSYGSITLNSDSDVRVAPN 385
Query: 429 VTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMTASAPVNLLPRHS 488
V FNY+ DL CV G E + ++ LP +
Sbjct: 386 VKFNYYSNSTDLAHCVSGMKKIGELLSSDALKPYKVEDLPGIDGFDILGIP----LPENQ 441
Query: 489 NASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQA 548
+ E FCR+ V + WHYHGGC VG+V+D D++V G++ALRV+DGSTF YSP ++PQ
Sbjct: 442 TDDAAFETFCREAVASYWHYHGGCLVGEVLDGDFRVTGINALRVVDGSTFPYSPASHPQG 501
Query: 549 TVMMLGRYV 557
+MLGRYV
Sbjct: 502 FYLMLGRYV 510
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 127/324 (39%), Gaps = 64/324 (19%)
Query: 272 KNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 323
+NE+++S GA+ +P+LLMLSG H I V++D P VG+ + D+P + +
Sbjct: 262 RNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQ 321
Query: 324 PVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIG-QLSKVPPKQRTPEA 382
P+ Q I F +P + G+ P + VP T
Sbjct: 322 PMVAESTQWWEIGIF-----------------TPTEDGLDRPDLMMHYGSVPFDMNTLRH 364
Query: 383 IAEAIENMKALDDPAFRGGFILE-KVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE--D 439
EN GF L V S G + LR+R+ D P V YF +PE D
Sbjct: 365 GYPTTEN-----------GFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHD 413
Query: 440 LQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMTASAPVNLLPR-HSNASTSLEQFC 498
++ V G E + P + T L P + L+ +
Sbjct: 414 MRVMVAGIRKAR-------------EIAAQPAMAEWTGR---ELSPGVEAQTDEELQDYI 457
Query: 499 RDTVMTIWHYHGGCQVGKV------VDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMM 552
R T T++H G ++G V +D + +V GV LRV D S NP TVMM
Sbjct: 458 RKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMM 517
Query: 553 LG-RYVNLTTSKYVSKILVSFCEV 575
+G R +L S + + E+
Sbjct: 518 IGERCADLIRSARAGETTTADAEL 541
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 127/324 (39%), Gaps = 64/324 (19%)
Query: 272 KNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 323
+NE+++S GA+ +P+LLMLSG H I V++D P VG+ + D+P + +
Sbjct: 262 RNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQ 321
Query: 324 PVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIG-QLSKVPPKQRTPEA 382
P+ Q I F +P + G+ P + VP T
Sbjct: 322 PMVAESTQWWEIGIF-----------------TPTEDGLDRPDLMMHYGSVPFDMNTLRH 364
Query: 383 IAEAIENMKALDDPAFRGGFILE-KVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE--D 439
EN GF L V S G + LR+R+ D P V YF +PE D
Sbjct: 365 GYPTTEN-----------GFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHD 413
Query: 440 LQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMTASAPVNLLPR-HSNASTSLEQFC 498
++ V G E + P + T L P + L+ +
Sbjct: 414 MRVMVAGIRKAR-------------EIAAQPAMAEWTGR---ELSPGVEAQTDEELQDYI 457
Query: 499 RDTVMTIWHYHGGCQVGKV------VDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMM 552
R T T++H G ++G V +D + +V GV LRV D S NP TVMM
Sbjct: 458 RKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMM 517
Query: 553 LG-RYVNLTTSKYVSKILVSFCEV 575
+G R +L S + + E+
Sbjct: 518 IGERCADLIRSARAGETTTADAEL 541
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 126/324 (38%), Gaps = 64/324 (19%)
Query: 272 KNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 323
+NE+++S GA+ +P+LLMLSG H I V++D P VG+ + D+P + +
Sbjct: 262 RNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQ 321
Query: 324 PVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIG-QLSKVPPKQRTPEA 382
P+ Q I F +P + G+ P + VP T
Sbjct: 322 PMVAESTQWWEIGIF-----------------TPTEDGLDRPDLMMHYGSVPFDMNTLRH 364
Query: 383 IAEAIENMKALDDPAFRGGFILE-KVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE--D 439
EN GF L V S G + LR+R+ D P V YF +PE D
Sbjct: 365 GYPTTEN-----------GFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHD 413
Query: 440 LQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMTASAPVNLLPR-HSNASTSLEQFC 498
++ V G E + P + T L P + L+ +
Sbjct: 414 MRVMVAGIRKAR-------------EIAAQPAMAEWTGR---ELSPGVEAQTDEELQDYI 457
Query: 499 RDTVMTIWHYHGGCQVGKV------VDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMM 552
R T T +H G ++G V +D + +V GV LRV D S NP TVMM
Sbjct: 458 RKTHNTAYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMM 517
Query: 553 LG-RYVNLTTSKYVSKILVSFCEV 575
+G R +L S + + E+
Sbjct: 518 IGERCADLIRSARAGETTTADAEL 541
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 135/309 (43%), Gaps = 56/309 (18%)
Query: 49 DYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYGNPNITNLGSFGAALS---DLSST 103
D +I+GGG+AG LAA LS+ ++ VLL+E G P +P+I N ++ A D
Sbjct: 19 DIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPT-DPDIWNPAAWPALQGRSYDWDYR 77
Query: 104 SPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAP----YYV-----REVGWDERLVNE 154
+ +Q + +R R++GG SCL+A Y R P +V R GWDE L
Sbjct: 78 TEAQAGTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELL--P 135
Query: 155 SYQWVEK-------------VVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKI 201
+Q +E + P + R +E G H G I
Sbjct: 136 VFQAIEDHPLGGDGIHGKGGPLPIHLPADEVSPLAR-AFIEAGASLGLPRLEGHNSGEMI 194
Query: 202 GGT---IFDQNGQRHTAADLLEYANPSG---LTLLLHASVHKVLFRIKGKARPVAHGVVF 255
G T + ++G+R TAAD G LT+L + V + +++G V
Sbjct: 195 GVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRR--LKLEGNQ------VRS 246
Query: 256 RDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQ 307
+ G + A + ++I++ AGAL SP LLM SG A + ++D P +G+
Sbjct: 247 LEVVGRQGSAEVF---ADQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGR 303
Query: 308 GMSDNPMNA 316
+ D+ + A
Sbjct: 304 NLQDHLLGA 312
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 482 NLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVIDGST 537
LLP N++ ++ F +V+T H G C++GK VVD + ++ +D L V+D S
Sbjct: 437 ELLPGTPNSAAEMDDFIARSVITHHHPCGTCRMGKDPDAVVDANLRLKALDNLFVVDASI 496
Query: 538 F 538
Sbjct: 497 M 497
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 128/607 (21%), Positives = 219/607 (36%), Gaps = 145/607 (23%)
Query: 46 SYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERG-GSPYGNPNITNLGSFGAALSDLSS 102
S++D++I+GGGTAG +A L++ N +VL++E G G+P P IT S +
Sbjct: 5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYD 64
Query: 103 TSPSQRFISEDGVI-----NSRARVLGGGSCLN--------AGFYTRAAPYYVREVGWDE 149
+ + D N+R + LGG S LN + + + +E WD
Sbjct: 65 WAYKTTMVRRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDP 124
Query: 150 RL--VNESYQWVEKVVAFEPPMRQ----------------WQSAVRDGLVEVGV---LPY 188
+ + +S + + + P + + + R+ L + P
Sbjct: 125 LVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQPL 184
Query: 189 NGFTYD-HMYG-TKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKA 246
YD M G T TI+ GQR + L N +T++ +++ +A
Sbjct: 185 IENIYDGEMDGLTHCCDTIY--RGQR--SGSFLFVKNKPNITIVPEVHSKRLII---NEA 237
Query: 247 RPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITV 298
GV A G + + E+I+S G +P+LLMLSG H I
Sbjct: 238 DRTCKGVTVVTAAGNELNFFA----DREVILSQGVFETPKLLMLSGIGPTRELSRHGINT 293
Query: 299 VLDQPLVGQGMSDNP-------------MNAIFVP---------------SPVPVEVSLI 330
++D VGQ + D+P M+ + + PV L+
Sbjct: 294 IVDSRHVGQNLMDHPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLL 353
Query: 331 QVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQ----LSKVP----------PK 376
++VG + Y+E + A + +D FSP +GQ L V P
Sbjct: 354 ELVGFPRIDKYLEKDAEYRKAKAANGGKD--PFSP-LGQPHFELDFVCMFGTAFQWHFPT 410
Query: 377 QRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKE 436
+T + + ++ ++ + DP G + L + +P P++ N+F
Sbjct: 411 PKTGDHLTVVVDLVRPISDP-----------------GEVTLNSADPFQQPNINLNFFAN 453
Query: 437 PEDLQRCVQGXXXXXXXXXXXXXXXXXYES---MSVPILVNMTASAPVNLLPRHSNASTS 493
D+ +G ES +P+ ++
Sbjct: 454 DLDIIAMREGIRFSYDLLFKGEGFKDLVESEYPWEMPL-----------------DSDKE 496
Query: 494 LEQFCRDTVMTIWHYHGGCQVGK-----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQA 548
+ + D T +H G ++ K VVD KV G+ LRV D S P Q
Sbjct: 497 MHRAVLDRCQTAFHPTGTARLSKNIDQGVVDPKLKVHGIKKLRVADASVIPIIPDCRIQN 556
Query: 549 TVMMLGR 555
+V +G
Sbjct: 557 SVYAVGE 563
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 98/379 (25%), Positives = 148/379 (39%), Gaps = 75/379 (19%)
Query: 48 YDYIIIGGGTAGCPLAATLSQN--ASVLLLERG------GSPYGNPNITNLGSFGAALSD 99
YDYII GGG G +AA L++N VL++E+G G+ +PN A
Sbjct: 25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPN---------AYGQ 75
Query: 100 LSSTSPSQRFISEDGVINSR------ARVLGGGSCLNAGFYTRAAPYYVREVGWDERLVN 153
+ T+ Q +++ +IN+R + LGG + +N +TR P V+ W++
Sbjct: 76 IFGTTVDQNYLTVP-LINNRTNNIKAGKGLGGSTLINGDSWTR--PDKVQIDSWEKVFGM 132
Query: 154 ESYQW------VEKVVAFEPPMRQW------------------QSAVRDG---------- 179
E + W ++K A P QS RD
Sbjct: 133 EGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKA 192
Query: 180 ----LVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAAD--LLEYANPSGLTLLLHA 233
+ +GV F H G + D+N R AA LL S L +L
Sbjct: 193 LMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQ 252
Query: 234 SVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGA 293
V KVLF+ + + P A GV F G K+E++++AG+ SP +L SG
Sbjct: 253 MVGKVLFK-QTASGPQAVGVNF----GTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGI 307
Query: 294 HNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGG 353
+ VLDQ V Q + D P+ S G Q + A E F
Sbjct: 308 -GLKSVLDQANVTQ-LLDLPVGINMQDQTTTTVSSRASSAGAGQGQAVFFANFTETFGDY 365
Query: 354 SPSPRDYGMFSPKIGQLSK 372
+P RD + + K+ Q ++
Sbjct: 366 APQARD--LLNTKLDQWAE 382
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 506 WHYHGGC-----QVGKVVDHDYKVLGVDALRVIDGS 536
WH C ++G VVD KV G LRVIDGS
Sbjct: 519 WHAVSSCSMMSRELGGVVDATAKVYGTQGLRVIDGS 554
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 101/401 (25%), Positives = 151/401 (37%), Gaps = 85/401 (21%)
Query: 49 DYIIIGGGTAGCPLAATLSQ--NASVLLLERGG--SPYGNPNITNLGSFGAALSDLSSTS 104
DYII GGG G AA L++ N SVL++E G S G P I +L ++G D+ +S
Sbjct: 21 DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRG-PIIEDLNAYG----DIFGSS 75
Query: 105 PSQRFISEDGVINSRARV------LGGGSCLNAGFYTRAAPYYVREVGWDERLVNESYQW 158
+ + + N++ + LGG + +N G +TR P+ + W+ NE + W
Sbjct: 76 VDHAYETVELATNNQTALIRSGNGLGGSTLVNGGTWTR--PHKAQVDSWETVFGNEGWNW 133
Query: 159 ---------VEKVVA---------------------------------FEPPMRQWQSAV 176
E+ A + P ++ SAV
Sbjct: 134 DNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAV 193
Query: 177 RDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAAD---LLEYANPSGLTLLLHA 233
D GV F +G + ++ R AA L Y P+ L +L
Sbjct: 194 ED----RGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPN-LQVLTGQ 248
Query: 234 SVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGA 293
V KVL G P A GV F G H Y K+E++++AG+ SP +L SG
Sbjct: 249 YVGKVLLSQNGTT-PRAVGVEFGTHKGNTHNVY----AKHEVLLAAGSAVSPTILEYSGI 303
Query: 294 HNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGG 353
+++ +PL + D P+ S I G Q + A E F
Sbjct: 304 GMKSIL--EPLGIDTVVDLPVGLNLQDQTTATVRSRITSAGAGQGQAAWFATFNETF--- 358
Query: 354 SPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAE-AIENMKAL 393
G +S K +L +Q EA+A N AL
Sbjct: 359 -------GDYSEKAHELLNTKLEQWAEEAVARGGFHNTTAL 392
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 513 QVGKVVDHDYKVLGVDALRVIDGS 536
++G VVD+ +V GV LRVIDGS
Sbjct: 527 EMGGVVDNAARVYGVQGLRVIDGS 550
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 20/159 (12%)
Query: 403 ILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXX 462
+ ++ PV+ G ++L T NP D P + Y D+ +Q
Sbjct: 412 VTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADF 471
Query: 463 XYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK------ 516
P + R ++E + RD TI+H G +
Sbjct: 472 VIR--------------PFDPRLRDPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWG 517
Query: 517 VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGR 555
VVD D KV GVD LR++DGS ++P + Q + ++G+
Sbjct: 518 VVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGK 556
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 136/321 (42%), Gaps = 66/321 (20%)
Query: 48 YDYIIIGGGTAGCPLAATLSQN--ASVLLLERGGSPYGNPNITNLGSFGAALS------- 98
+DY+++G G AG +AA L+++ SVL+LE G S + N+ LG+ L+
Sbjct: 3 FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVS---DENV--LGAEAPLLAPGLVPNS 57
Query: 99 --DLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAA-------PYYVREVGWDE 149
D + T+ +Q + + R R+LGG S ++ R + + GW+
Sbjct: 58 IFDWNYTTTAQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117
Query: 150 RLVNESYQWVEKVV----------AFEPPMRQWQSAVR-----------DGLVEVGVLPY 188
+ + + E VV F P + +V D ++
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQS 177
Query: 189 NGFTYDHMYGTK----IGGTIFD-QNGQRHTAADLLEYANPS----GLTLLLHASVHKVL 239
F ++ GT I +I NGQR +++ Y P+ L++L++A V K++
Sbjct: 178 EEFFFNPDMGTGHPLGISWSIASVGNGQRSSSS--TAYLRPAQSRPNLSVLINAQVTKLV 235
Query: 240 FRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHN---- 295
P V + + GA K E+++SAG++G+P LL LSG +
Sbjct: 236 NSGTTNGLPAFRCVEYAEQEGAPTTTVCA---KKEVVLSAGSVGTPILLQLSGIGDENDL 292
Query: 296 ----ITVVLDQPLVGQGMSDN 312
I +++ P VG+ +SD+
Sbjct: 293 SSVGIDTIVNNPSVGRNLSDH 313
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 486 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 545
R+ T L+ F D +H GGC +GK D +V G L V DGS S G N
Sbjct: 424 RYDLFGTQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 480
Query: 546 PQATVMML 553
P T+ L
Sbjct: 481 PFVTITAL 488
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 486 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 545
R+ T L+ F D +H GGC +GK D +V G L V DGS S G N
Sbjct: 424 RYDLFGTQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 480
Query: 546 PQATVMML 553
P T+ L
Sbjct: 481 PFVTITAL 488
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 486 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 545
R+ T L+ F D +H GGC +GK D +V G L V DGS S G N
Sbjct: 422 RYDLFGTQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 478
Query: 546 PQATVMML 553
P T+ L
Sbjct: 479 PFVTITAL 486
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 486 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 545
R+ T L+ F D +H GGC +GK D +V G L V DGS S G +
Sbjct: 424 RYDLFGTQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVD 480
Query: 546 PQATVMML 553
P T+ L
Sbjct: 481 PFVTITAL 488
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 112/305 (36%), Gaps = 53/305 (17%)
Query: 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG-------GSPYGNPNITNLGSFGAALSD 99
YDYII+G G G A LS+ VLLLERG G Y P T+ G +
Sbjct: 8 YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPG 67
Query: 100 L--SSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAP-YYVREVGWDERLVNE-- 154
L S + S F + ++GGG+ +N Y + VGW N
Sbjct: 68 LFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHAP 127
Query: 155 -SYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVL----PYNGFTY-------DHMYGTKIG 202
+ + ++ + + P Q + V L YN T DH++G
Sbjct: 128 YTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQGYNQATINDNPNYKDHVFGY--- 184
Query: 203 GTIFD-QNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAH------GVVF 255
+ FD NG+R A P L + F+ V GV
Sbjct: 185 -SAFDFLNGKR---------AGPVATYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQT 234
Query: 256 RDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHNITVVLDQPLVGQGMSDNPMN 315
D T + ++ PK +I+SAGA G+ ++L SG ++ Q + NP
Sbjct: 235 NDPTLGPN-GFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMI-------QTVQSNPTA 286
Query: 316 AIFVP 320
A +P
Sbjct: 287 AAALP 291
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 510 GGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVM 551
G VVD + KV G + L ++D + P NPQ T+M
Sbjct: 488 GSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLM 529
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
Length = 541
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79
YDYII+G G G A LS+ VLLLERGG
Sbjct: 3 YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG 35
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 517 VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVM 551
VVD + KV G + L ++D + P NPQ T+M
Sbjct: 490 VVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLM 524
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 486 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 545
R+ T L+ F D ++ GGC +GK D +V G L V DGS S G N
Sbjct: 424 RYDLFGTQLKAFADDFC---YNPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 480
Query: 546 PQATVMML 553
P T+ L
Sbjct: 481 PFVTITAL 488
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 486 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 545
R+ T L+ F D + GGC +GK D +V G L V DGS S G N
Sbjct: 424 RYDLFGTQLKAFADDFC---YQPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 480
Query: 546 PQATVMML 553
P T+ L
Sbjct: 481 PFVTITAL 488
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 486 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 545
R+ T L+ F D + GGC +GK D +V G L V DGS S G N
Sbjct: 424 RYDLFGTQLKAFADDFC---YQPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 480
Query: 546 PQATVMML 553
P T+ L
Sbjct: 481 PFVTITAL 488
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 486 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 545
R+ T L+ F D + GGC +GK D +V G L V DGS S G N
Sbjct: 426 RYDLFGTQLKAFADDFC---YQPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVN 482
Query: 546 PQATVMML 553
P T+ L
Sbjct: 483 PFVTITAL 490
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
(0.92a)
Length = 504
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 486 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 545
R+ T L+ F D +H GGC +GK D +V G L V DGS S G
Sbjct: 424 RYDLFGTQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVL 480
Query: 546 PQATVMML 553
P T+ L
Sbjct: 481 PFVTITAL 488
>pdb|3NYE|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With Imino-Arginine
pdb|3NYF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With Imino-Histidine
pdb|3NYC|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase
pdb|3SM8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With An (N5) Flavin Adduct
Length = 381
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 15/66 (22%)
Query: 49 DYIIIGGGTAGCPLAATLSQNASVLLLERGGSP---------------YGNPNITNLGSF 93
DY++IG G AG LS + V++LER P YG P + L +
Sbjct: 11 DYLVIGAGIAGASTGYWLSAHGRVVVLEREAQPGYHSTGRSAAHYTVAYGTPQVRALTAA 70
Query: 94 GAALSD 99
A D
Sbjct: 71 SRAFFD 76
>pdb|2GAG|B Chain B, Heteroteterameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 43 QPVSYYDYIIIGGGTAGCPLAATLSQN---ASVLLLERGGSPYGN 84
+P YD II+GGG G A L++N +V +LE+G GN
Sbjct: 17 EPKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGN 61
>pdb|2GAH|B Chain B, Heterotetrameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 43 QPVSYYDYIIIGGGTAGCPLAATLSQN---ASVLLLERGGSPYGN 84
+P YD II+GGG G A L++N +V +LE+G GN
Sbjct: 17 EPKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGN 61
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLER----GGSPY 82
YDYII+G G G A L + N VL++E+ GG+ Y
Sbjct: 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAY 41
>pdb|3P1W|A Chain A, Crystal Structure Of Rab Gdi From Plasmodium Falciparum,
Pfl2060c
Length = 475
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG---GSPYGNPNITNLGSFGAALSDLS 101
+YD II+G G C L+ LS +L+L+R G + N+TNL + ++
Sbjct: 19 EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIP 78
Query: 102 STSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPY 140
S R + D + +L GG+ + TR Y
Sbjct: 79 SKYGENRHWNVDLI---PKFILVGGNLVKILKKTRVTNY 114
>pdb|3K1Q|A Chain A, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3IYL|W Chain W, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1299
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 477 ASAPVNLLPRHSNASTSLEQ---FCRDTVMT-IWHYHGGCQVGKVVDHDYKVLG 526
AS P+ LLP++ NA+ +++Q DT ++ + HG C G V Y + G
Sbjct: 394 ASRPLRLLPQYRNATITVQQADDAYEDTALSPLITTHGFCVTGGVFTSIYDISG 447
>pdb|3UNG|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
pdb|3UR3|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
Length = 693
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 115 VINSRARVLGGGSCLNAGFYTRAAPYYVREVGWD 148
++N++A+ + G L G R+ YY+ VGW+
Sbjct: 555 LLNNKAKNVPGKDTLAIGLLKRSGSYYISLVGWE 588
>pdb|4DOZ|A Chain A, Crystal Structure Of Pyrococcus Furiosus Cmr2 (Cas10)
Length = 686
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 115 VINSRARVLGGGSCLNAGFYTRAAPYYVREVGWD 148
++N++A+ + G L G R+ YY+ VGW+
Sbjct: 540 LLNNKAKNVPGKDTLAIGLLKRSGSYYISLVGWE 573
>pdb|3E1T|A Chain A, Structure And Action Of The Myxobacterial Chondrochloren
Halogenase Cndh, A New Variant Of Fad-Dependent
Halogenases
Length = 512
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 48 YDYIIIGGGTAGCPLAATLSQNA-SVLLLERGGSP 81
+D I+IGGG G LA+ ++ VLLLER P
Sbjct: 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFP 42
>pdb|2O8S|A Chain A, X-ray Crystal Structure Of Protein Agr_c_984 From
Agrobacterium Tumefaciens. Northeast Structural Genomics
Consortium Target Atr120.
pdb|2O8S|B Chain B, X-ray Crystal Structure Of Protein Agr_c_984 From
Agrobacterium Tumefaciens. Northeast Structural Genomics
Consortium Target Atr120
Length = 323
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 327 VSLIQVVGITQFGSYIEAASGENFAGGSPSP--RDYGMFSPKIGQ----LSKVPPKQRTP 380
VS Q + + G SG N +GGS + Y + S IG+ +SK P R
Sbjct: 26 VSHKQAATLCRQGRTCALKSGSNESGGSVTSTYTSYRLISQDIGKSLERVSKQPDVARET 85
Query: 381 EAIAEAIENMKALDD 395
E E I ++K++DD
Sbjct: 86 EYYREKIGSVKSIDD 100
>pdb|3UK7|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dj-1d
pdb|3UK7|B Chain B, Crystal Structure Of Arabidopsis Thaliana Dj-1d
pdb|3UK7|C Chain C, Crystal Structure Of Arabidopsis Thaliana Dj-1d
Length = 396
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 21 HDFCACQK--AAPNYSFMHNATAAQ-PVSYYDYIIIGGGTAGCPLAATLSQNASVLLLER 77
HDFC Q + ++F NAT + +S YD ++I GG A LA T S V R
Sbjct: 60 HDFCGHQTYFESRGHNFTLNATFDEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSR 119
Query: 78 GGSP 81
G P
Sbjct: 120 SGKP 123
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 38 NATAAQPVSY-YDYIIIGGGTAGCPLAATL-SQNASVLLLER----GGSPY 82
N T Q S +DY+I+G G AG LA L S VL+++R GG+ Y
Sbjct: 19 NTTNEQQESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAY 69
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 48 YDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYG 83
YD I++GGG +G A L+ +LL GG G
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLG 37
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound
6-Hydroxy-L-Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine
Oxidase With Substrate Bound At Active Site And
Inhibitor At Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With
Intermediate Methylmyosmine Product Formed During
Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final
Ketone Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product
Bound At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit
Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With
Nicotinamide
Length = 431
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 48 YDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYG 83
YD I++GGG +G A L+ +LL GG G
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLG 37
>pdb|1RP0|A Chain A, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
pdb|1RP0|B Chain B, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
Length = 284
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 49 DYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPS 106
D +++G G+AG A +S+ N V ++E+ SP G + G S + P+
Sbjct: 41 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLG-----GQLFSAMIVRKPA 95
Query: 107 QRFISEDGV 115
F+ E GV
Sbjct: 96 HLFLDEIGV 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,683,371
Number of Sequences: 62578
Number of extensions: 767411
Number of successful extensions: 1924
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1826
Number of HSP's gapped (non-prelim): 94
length of query: 575
length of database: 14,973,337
effective HSP length: 104
effective length of query: 471
effective length of database: 8,465,225
effective search space: 3987120975
effective search space used: 3987120975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)