Query 008163
Match_columns 575
No_of_seqs 217 out of 1796
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 20:17:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02785 Protein HOTHEAD 100.0 3.6E-80 7.8E-85 665.9 47.4 541 23-565 21-580 (587)
2 KOG1238 Glucose dehydrogenase/ 100.0 1.4E-78 3E-83 626.7 34.1 499 35-569 45-620 (623)
3 PRK02106 choline dehydrogenase 100.0 1.5E-69 3.2E-74 589.3 38.2 487 44-565 2-535 (560)
4 TIGR01810 betA choline dehydro 100.0 2.4E-68 5.3E-73 576.8 37.3 481 49-564 1-529 (532)
5 COG2303 BetA Choline dehydroge 100.0 6.6E-63 1.4E-67 529.4 34.8 481 44-564 4-536 (542)
6 TIGR02462 pyranose_ox pyranose 100.0 1.4E-48 3.1E-53 412.0 37.2 465 48-565 1-543 (544)
7 PF00732 GMC_oxred_N: GMC oxid 100.0 8.2E-39 1.8E-43 322.1 14.3 256 48-314 1-296 (296)
8 PF05199 GMC_oxred_C: GMC oxid 100.0 1.1E-32 2.5E-37 246.5 10.6 139 410-557 1-144 (144)
9 PRK06481 fumarate reductase fl 99.6 9.2E-15 2E-19 157.4 19.3 191 44-290 58-258 (506)
10 PRK12845 3-ketosteroid-delta-1 99.6 4.2E-14 9.1E-19 153.3 17.5 62 218-289 223-284 (564)
11 PRK07121 hypothetical protein; 99.5 1.6E-13 3.4E-18 147.9 17.4 65 218-291 183-247 (492)
12 PRK12835 3-ketosteroid-delta-1 99.5 1.1E-13 2.3E-18 151.2 15.4 61 220-289 221-281 (584)
13 PRK12844 3-ketosteroid-delta-1 99.5 1.1E-13 2.4E-18 150.4 15.3 63 218-290 214-276 (557)
14 PRK08274 tricarballylate dehyd 99.5 1.3E-13 2.8E-18 147.8 15.0 64 218-291 137-200 (466)
15 PF00890 FAD_binding_2: FAD bi 99.5 9.7E-14 2.1E-18 146.7 12.9 188 49-290 1-209 (417)
16 PRK12837 3-ketosteroid-delta-1 99.5 5.4E-13 1.2E-17 144.0 18.0 63 218-290 179-242 (513)
17 COG2081 Predicted flavoprotein 99.5 3.4E-13 7.5E-18 133.7 14.7 168 46-287 2-171 (408)
18 PRK12834 putative FAD-binding 99.5 7.7E-13 1.7E-17 144.1 17.1 35 45-79 2-37 (549)
19 PRK06175 L-aspartate oxidase; 99.5 6.9E-13 1.5E-17 139.9 16.0 177 46-284 3-190 (433)
20 PF03486 HI0933_like: HI0933-l 99.4 1.2E-13 2.7E-18 143.0 7.0 184 48-303 1-192 (409)
21 TIGR01813 flavo_cyto_c flavocy 99.4 1.3E-12 2.8E-17 139.0 13.7 63 218-289 136-198 (439)
22 PRK06452 sdhA succinate dehydr 99.4 3.1E-12 6.7E-17 139.4 16.7 56 218-283 142-198 (566)
23 PRK07843 3-ketosteroid-delta-1 99.4 4.1E-12 9E-17 138.3 17.6 64 218-291 214-277 (557)
24 PRK06263 sdhA succinate dehydr 99.4 3.4E-12 7.3E-17 138.9 16.5 58 218-284 140-198 (543)
25 PRK08958 sdhA succinate dehydr 99.4 3.3E-12 7.1E-17 139.6 16.4 58 218-284 149-207 (588)
26 PLN00128 Succinate dehydrogena 99.4 2.7E-12 5.7E-17 141.0 15.6 59 218-285 193-252 (635)
27 PRK12843 putative FAD-binding 99.4 4.9E-12 1.1E-16 138.3 17.3 63 218-290 227-289 (578)
28 PTZ00139 Succinate dehydrogena 99.4 3.2E-12 7E-17 140.3 15.5 58 218-284 172-230 (617)
29 PRK07573 sdhA succinate dehydr 99.4 4.7E-12 1E-16 139.5 16.5 54 221-284 179-233 (640)
30 PLN02815 L-aspartate oxidase 99.4 3.7E-12 8E-17 138.6 15.0 61 218-284 161-223 (594)
31 PRK09078 sdhA succinate dehydr 99.4 4.4E-12 9.5E-17 139.0 15.7 58 218-284 155-213 (598)
32 PRK12839 hypothetical protein; 99.4 7.6E-12 1.6E-16 136.2 17.3 63 218-289 220-282 (572)
33 PRK07395 L-aspartate oxidase; 99.4 3.4E-12 7.3E-17 138.4 14.3 57 218-284 140-198 (553)
34 PRK12842 putative succinate de 99.4 9.9E-12 2.1E-16 136.1 18.1 63 218-290 220-282 (574)
35 PRK06134 putative FAD-binding 99.4 1.7E-11 3.6E-16 134.3 17.9 62 218-289 223-284 (581)
36 PRK07804 L-aspartate oxidase; 99.4 1.3E-11 2.8E-16 134.0 16.4 39 43-81 12-51 (541)
37 PRK05945 sdhA succinate dehydr 99.4 1.2E-11 2.6E-16 135.3 16.2 57 218-284 141-198 (575)
38 PRK09077 L-aspartate oxidase; 99.4 1.4E-11 3E-16 133.6 16.4 62 218-284 144-208 (536)
39 PTZ00306 NADH-dependent fumara 99.3 1.3E-11 2.9E-16 144.5 16.9 58 224-286 559-623 (1167)
40 PRK08071 L-aspartate oxidase; 99.3 1.3E-11 2.9E-16 132.9 15.3 56 218-284 136-191 (510)
41 PRK08626 fumarate reductase fl 99.3 1.8E-11 4E-16 135.1 15.7 57 218-284 164-221 (657)
42 PRK08641 sdhA succinate dehydr 99.3 1.4E-11 3E-16 134.8 14.1 50 226-284 151-201 (589)
43 PRK07057 sdhA succinate dehydr 99.3 2.4E-11 5.2E-16 133.1 15.9 58 218-284 154-212 (591)
44 PRK09231 fumarate reductase fl 99.3 2.8E-11 6.1E-16 132.3 16.3 52 223-284 145-197 (582)
45 PRK11101 glpA sn-glycerol-3-ph 99.3 1.9E-11 4E-16 132.9 14.8 80 201-292 136-219 (546)
46 PRK08205 sdhA succinate dehydr 99.3 3.1E-11 6.7E-16 132.2 15.1 58 218-284 146-207 (583)
47 TIGR01176 fum_red_Fp fumarate 99.3 4.1E-11 8.9E-16 130.7 16.0 52 223-284 144-196 (580)
48 PRK07803 sdhA succinate dehydr 99.3 3.7E-11 7.9E-16 132.4 15.7 49 227-285 166-215 (626)
49 TIGR00551 nadB L-aspartate oxi 99.3 4.3E-11 9.3E-16 128.6 15.7 56 218-284 134-190 (488)
50 PRK06069 sdhA succinate dehydr 99.3 3.5E-11 7.6E-16 131.8 15.3 57 218-284 143-201 (577)
51 TIGR01812 sdhA_frdA_Gneg succi 99.3 5.1E-11 1.1E-15 130.6 15.8 57 218-284 135-192 (566)
52 TIGR01811 sdhA_Bsu succinate d 99.2 6.7E-11 1.4E-15 129.6 14.4 52 224-284 145-197 (603)
53 PRK07512 L-aspartate oxidase; 99.2 1.1E-10 2.5E-15 125.8 14.7 56 218-284 142-198 (513)
54 PRK08275 putative oxidoreducta 99.2 2.1E-10 4.5E-15 125.1 13.9 58 218-284 143-201 (554)
55 TIGR02061 aprA adenosine phosp 99.2 3.5E-10 7.7E-15 123.2 15.3 54 221-283 135-191 (614)
56 COG0579 Predicted dehydrogenas 99.2 6.3E-10 1.4E-14 114.4 16.1 61 218-292 159-219 (429)
57 PRK06854 adenylylsulfate reduc 99.2 3.2E-10 7E-15 124.5 14.8 56 218-283 138-195 (608)
58 PF01266 DAO: FAD dependent ox 99.2 3.5E-11 7.6E-16 124.2 6.7 59 218-292 153-211 (358)
59 PLN02464 glycerol-3-phosphate 99.2 2.3E-10 5.1E-15 125.8 13.0 76 207-292 224-304 (627)
60 PRK13800 putative oxidoreducta 99.1 6.8E-10 1.5E-14 127.5 15.6 51 224-284 155-206 (897)
61 COG0029 NadB Aspartate oxidase 99.1 6.3E-10 1.4E-14 113.3 13.3 57 218-283 139-196 (518)
62 PF01946 Thi4: Thi4 family; PD 99.1 1.7E-10 3.6E-15 105.8 6.7 36 46-81 16-52 (230)
63 PTZ00383 malate:quinone oxidor 99.1 2.2E-09 4.8E-14 114.2 16.3 39 42-80 40-81 (497)
64 PRK12266 glpD glycerol-3-phosp 99.1 1.6E-09 3.4E-14 116.9 15.3 39 44-82 3-42 (508)
65 TIGR02485 CobZ_N-term precorri 99.1 6.4E-10 1.4E-14 118.0 11.7 61 218-290 129-190 (432)
66 PRK12409 D-amino acid dehydrog 99.1 1.4E-09 3E-14 114.8 13.5 33 48-80 2-35 (410)
67 TIGR01320 mal_quin_oxido malat 99.1 6.1E-09 1.3E-13 111.2 18.2 81 201-292 164-248 (483)
68 PRK04176 ribulose-1,5-biphosph 99.1 1.1E-09 2.4E-14 107.0 11.5 37 45-81 23-60 (257)
69 COG1635 THI4 Ribulose 1,5-bisp 99.1 1.6E-09 3.5E-14 98.6 11.6 35 47-81 30-65 (262)
70 PRK08401 L-aspartate oxidase; 99.1 2.4E-09 5.1E-14 114.5 15.0 32 48-79 2-34 (466)
71 PRK13369 glycerol-3-phosphate 99.0 1.2E-09 2.7E-14 117.8 12.5 61 218-290 161-221 (502)
72 PRK11259 solA N-methyltryptoph 99.0 2.3E-09 5E-14 111.8 13.4 34 47-80 3-37 (376)
73 COG1053 SdhA Succinate dehydro 99.0 1.6E-09 3.5E-14 116.5 11.2 39 44-82 3-42 (562)
74 TIGR00292 thiazole biosynthesi 99.0 2.5E-09 5.3E-14 104.2 11.3 37 45-81 19-56 (254)
75 TIGR01373 soxB sarcosine oxida 99.0 7E-09 1.5E-13 109.3 15.7 38 43-80 26-66 (407)
76 TIGR03329 Phn_aa_oxid putative 99.0 2.7E-09 5.8E-14 114.1 12.0 37 44-80 21-60 (460)
77 TIGR01377 soxA_mon sarcosine o 99.0 4.8E-09 1E-13 109.5 13.6 33 48-80 1-34 (380)
78 PRK05257 malate:quinone oxidor 99.0 7E-09 1.5E-13 110.9 15.0 64 218-292 189-254 (494)
79 COG0578 GlpA Glycerol-3-phosph 99.0 7.3E-09 1.6E-13 108.7 14.4 60 221-292 173-233 (532)
80 PLN02661 Putative thiazole syn 99.0 4.7E-09 1E-13 105.1 11.9 35 46-80 91-127 (357)
81 PRK10157 putative oxidoreducta 98.9 2.9E-09 6.3E-14 112.6 10.3 36 46-81 4-40 (428)
82 PRK11728 hydroxyglutarate oxid 98.9 4.4E-09 9.6E-14 110.2 11.7 34 47-80 2-38 (393)
83 COG3573 Predicted oxidoreducta 98.9 1.6E-08 3.5E-13 97.3 14.0 37 45-81 3-40 (552)
84 PRK00711 D-amino acid dehydrog 98.9 1.3E-08 2.8E-13 107.7 14.5 57 218-290 207-263 (416)
85 PTZ00363 rab-GDP dissociation 98.9 1.6E-08 3.4E-13 106.2 14.2 44 44-87 1-45 (443)
86 PRK13339 malate:quinone oxidor 98.9 4E-08 8.8E-13 104.3 17.0 64 218-292 190-255 (497)
87 KOG2820 FAD-dependent oxidored 98.9 6.4E-09 1.4E-13 100.5 9.6 39 44-82 4-43 (399)
88 PRK10015 oxidoreductase; Provi 98.9 5E-09 1.1E-13 110.7 8.9 37 45-81 3-40 (429)
89 TIGR03364 HpnW_proposed FAD de 98.8 1E-08 2.2E-13 106.5 9.7 33 48-80 1-34 (365)
90 COG0644 FixC Dehydrogenases (f 98.8 1E-08 2.2E-13 107.4 9.8 37 46-82 2-39 (396)
91 PRK05192 tRNA uridine 5-carbox 98.8 2.8E-08 6E-13 106.6 11.7 35 45-79 2-37 (618)
92 PF12831 FAD_oxidored: FAD dep 98.8 1.2E-09 2.7E-14 115.3 1.3 58 221-292 99-156 (428)
93 PRK01747 mnmC bifunctional tRN 98.8 3.7E-08 8E-13 110.1 12.0 34 47-80 260-294 (662)
94 KOG1298 Squalene monooxygenase 98.8 2.3E-08 5.1E-13 98.1 8.8 55 221-286 157-211 (509)
95 TIGR00275 flavoprotein, HI0933 98.8 8.6E-08 1.9E-12 100.4 13.7 32 51-82 1-33 (400)
96 KOG2404 Fumarate reductase, fl 98.7 5.7E-08 1.2E-12 93.2 10.5 54 226-289 159-213 (477)
97 COG1233 Phytoene dehydrogenase 98.7 6.8E-08 1.5E-12 103.7 12.5 39 46-84 2-41 (487)
98 PRK13977 myosin-cross-reactive 98.7 3.2E-07 6.9E-12 97.6 15.8 63 218-284 232-294 (576)
99 TIGR02730 carot_isom carotene 98.7 1.1E-07 2.3E-12 102.8 11.8 73 203-289 220-292 (493)
100 COG0665 DadA Glycine/D-amino a 98.7 2.8E-07 6E-12 96.4 14.3 37 45-81 2-39 (387)
101 PF06039 Mqo: Malate:quinone o 98.6 4E-07 8.6E-12 92.9 13.4 85 218-323 187-273 (488)
102 KOG0042 Glycerol-3-phosphate d 98.6 5.5E-08 1.2E-12 99.5 7.2 75 208-292 217-295 (680)
103 PRK06185 hypothetical protein; 98.6 2.6E-07 5.7E-12 97.4 12.1 38 43-80 2-40 (407)
104 KOG2415 Electron transfer flav 98.6 1.2E-07 2.7E-12 93.9 7.8 63 221-292 192-267 (621)
105 PRK08773 2-octaprenyl-3-methyl 98.6 4.9E-07 1.1E-11 94.8 12.4 37 44-80 3-40 (392)
106 PF01134 GIDA: Glucose inhibit 98.6 2.4E-07 5.2E-12 94.4 9.3 50 221-285 105-154 (392)
107 PF13738 Pyr_redox_3: Pyridine 98.5 1.8E-07 4E-12 88.4 7.7 59 218-291 87-146 (203)
108 COG3380 Predicted NAD/FAD-depe 98.5 5.1E-07 1.1E-11 85.0 9.6 32 49-80 3-35 (331)
109 PLN02172 flavin-containing mon 98.5 7.2E-07 1.6E-11 94.7 12.2 39 44-82 7-46 (461)
110 TIGR02734 crtI_fam phytoene de 98.5 2.5E-07 5.3E-12 100.4 8.8 72 204-289 211-282 (502)
111 PRK07364 2-octaprenyl-6-methox 98.5 1.2E-06 2.5E-11 92.7 13.6 39 43-81 14-53 (415)
112 PRK05675 sdhA succinate dehydr 98.5 1.4E-06 3.1E-11 95.3 14.3 58 218-284 132-190 (570)
113 PLN02985 squalene monooxygenas 98.5 5.4E-07 1.2E-11 97.1 10.5 39 41-79 37-76 (514)
114 TIGR02032 GG-red-SF geranylger 98.5 7.4E-07 1.6E-11 89.3 10.5 34 48-81 1-35 (295)
115 TIGR03378 glycerol3P_GlpB glyc 98.5 1.7E-06 3.7E-11 89.3 12.7 63 218-292 269-331 (419)
116 PRK07208 hypothetical protein; 98.4 2.3E-06 4.9E-11 92.3 13.0 41 44-84 1-42 (479)
117 TIGR02733 desat_CrtD C-3',4' d 98.4 2.1E-06 4.5E-11 92.9 12.1 71 207-287 227-298 (492)
118 KOG2844 Dimethylglycine dehydr 98.4 1.1E-06 2.5E-11 92.1 9.2 76 201-292 173-251 (856)
119 PRK07251 pyridine nucleotide-d 98.4 1.7E-06 3.7E-11 92.1 10.9 34 46-79 2-36 (438)
120 PRK06467 dihydrolipoamide dehy 98.4 1.4E-06 3.1E-11 93.4 10.4 35 45-79 2-37 (471)
121 PRK05976 dihydrolipoamide dehy 98.4 1.7E-06 3.8E-11 92.9 10.7 34 45-78 2-36 (472)
122 PRK06126 hypothetical protein; 98.4 8.3E-06 1.8E-10 89.4 16.0 37 44-80 4-41 (545)
123 PRK06847 hypothetical protein; 98.3 2.5E-06 5.4E-11 88.9 11.0 36 45-80 2-38 (375)
124 TIGR01988 Ubi-OHases Ubiquinon 98.3 3.4E-06 7.3E-11 88.2 11.9 33 49-81 1-34 (385)
125 PRK07333 2-octaprenyl-6-methox 98.3 2.8E-06 6E-11 89.5 11.3 33 48-80 2-37 (403)
126 PRK05249 soluble pyridine nucl 98.3 4.4E-06 9.5E-11 89.6 12.9 36 45-80 3-39 (461)
127 PRK08020 ubiF 2-octaprenyl-3-m 98.3 2.7E-06 5.8E-11 89.2 11.0 36 45-80 3-39 (391)
128 COG2509 Uncharacterized FAD-de 98.3 7.2E-06 1.6E-10 83.2 13.3 217 40-298 11-245 (486)
129 PRK08013 oxidoreductase; Provi 98.3 4.5E-06 9.8E-11 87.7 12.5 35 46-80 2-37 (400)
130 PRK06834 hypothetical protein; 98.3 5.3E-06 1.2E-10 89.2 12.9 35 46-80 2-37 (488)
131 PRK07608 ubiquinone biosynthes 98.3 6E-06 1.3E-10 86.5 12.9 35 47-81 5-40 (388)
132 PRK05714 2-octaprenyl-3-methyl 98.3 4.7E-06 1E-10 87.8 12.1 33 47-79 2-35 (405)
133 PRK06183 mhpA 3-(3-hydroxyphen 98.3 1.2E-05 2.6E-10 87.9 15.4 37 45-81 8-45 (538)
134 COG2072 TrkA Predicted flavopr 98.3 7E-06 1.5E-10 86.9 13.0 41 43-83 4-46 (443)
135 PRK07190 hypothetical protein; 98.3 3.9E-06 8.4E-11 90.2 11.1 37 45-81 3-40 (487)
136 PF01494 FAD_binding_3: FAD bi 98.3 1.8E-06 3.9E-11 88.9 8.3 35 47-81 1-36 (356)
137 TIGR01816 sdhA_forward succina 98.3 9.6E-06 2.1E-10 88.8 14.1 57 218-284 125-182 (565)
138 PRK08244 hypothetical protein; 98.3 4.3E-06 9.3E-11 90.5 11.0 34 47-80 2-36 (493)
139 PLN02697 lycopene epsilon cycl 98.3 4.2E-06 9.1E-11 89.9 10.6 33 46-78 107-140 (529)
140 TIGR02028 ChlP geranylgeranyl 98.3 5.8E-06 1.3E-10 86.7 11.2 32 48-79 1-33 (398)
141 PRK06184 hypothetical protein; 98.2 3.5E-06 7.7E-11 91.3 9.4 36 46-81 2-38 (502)
142 PLN02463 lycopene beta cyclase 98.2 4.2E-06 9.1E-11 88.4 9.6 35 45-79 26-61 (447)
143 TIGR00136 gidA glucose-inhibit 98.2 6.9E-06 1.5E-10 88.3 10.8 32 48-79 1-33 (617)
144 PRK07045 putative monooxygenas 98.2 1.6E-05 3.4E-10 83.3 13.4 37 45-81 3-40 (388)
145 COG0654 UbiH 2-polyprenyl-6-me 98.2 8.1E-06 1.8E-10 85.4 10.9 32 47-78 2-34 (387)
146 PRK08243 4-hydroxybenzoate 3-m 98.2 1E-05 2.2E-10 84.8 10.8 34 47-80 2-36 (392)
147 KOG4254 Phytoene desaturase [C 98.2 4.8E-06 1E-10 83.9 7.6 69 207-289 259-327 (561)
148 TIGR01984 UbiH 2-polyprenyl-6- 98.2 1.2E-05 2.5E-10 84.1 11.1 33 49-81 1-35 (382)
149 PRK08163 salicylate hydroxylas 98.2 1.1E-05 2.4E-10 84.6 11.0 35 46-80 3-38 (396)
150 PRK11445 putative oxidoreducta 98.1 3.1E-05 6.6E-10 79.9 13.2 33 48-80 2-34 (351)
151 PRK06617 2-octaprenyl-6-methox 98.1 2E-05 4.3E-10 82.1 11.7 32 48-79 2-34 (374)
152 PRK06996 hypothetical protein; 98.1 2.6E-05 5.7E-10 81.9 11.3 38 43-80 7-49 (398)
153 PRK15317 alkyl hydroperoxide r 98.1 2.5E-05 5.4E-10 84.8 11.4 33 45-77 209-242 (517)
154 PF13450 NAD_binding_8: NAD(P) 98.1 2.7E-06 5.9E-11 64.7 2.7 32 52-83 1-33 (68)
155 PRK07236 hypothetical protein; 98.0 6E-05 1.3E-09 78.9 13.7 36 45-80 4-40 (386)
156 PRK07588 hypothetical protein; 98.0 2E-05 4.3E-10 82.7 9.8 32 49-80 2-34 (391)
157 PRK08132 FAD-dependent oxidore 98.0 7.2E-05 1.6E-09 82.0 14.1 37 44-80 20-57 (547)
158 PF00743 FMO-like: Flavin-bind 98.0 8.4E-06 1.8E-10 87.9 6.3 35 49-83 3-38 (531)
159 COG0445 GidA Flavin-dependent 98.0 1.7E-05 3.8E-10 82.1 8.0 34 46-79 3-37 (621)
160 PLN02487 zeta-carotene desatur 98.0 0.00012 2.5E-09 79.7 14.8 97 218-325 301-397 (569)
161 TIGR03377 glycerol3P_GlpA glyc 98.0 4.8E-05 1E-09 82.7 11.8 79 202-292 116-198 (516)
162 KOG2853 Possible oxidoreductas 98.0 9.6E-05 2.1E-09 72.0 12.0 37 46-82 85-126 (509)
163 TIGR03862 flavo_PP4765 unchara 98.0 8.2E-05 1.8E-09 76.3 12.3 105 174-304 57-168 (376)
164 PF05834 Lycopene_cycl: Lycope 98.0 4.1E-05 8.8E-10 79.6 10.2 33 49-81 1-36 (374)
165 PRK06753 hypothetical protein; 98.0 6.9E-05 1.5E-09 78.0 12.0 33 49-81 2-35 (373)
166 KOG2960 Protein involved in th 97.9 8.8E-06 1.9E-10 73.8 4.4 35 47-81 76-113 (328)
167 TIGR03140 AhpF alkyl hydropero 97.9 5.1E-05 1.1E-09 82.4 11.1 33 45-77 210-243 (515)
168 PLN00093 geranylgeranyl diphos 97.9 7E-06 1.5E-10 87.1 4.2 37 43-79 35-72 (450)
169 PTZ00058 glutathione reductase 97.9 1.1E-05 2.3E-10 87.7 5.5 35 45-79 46-81 (561)
170 COG0562 Glf UDP-galactopyranos 97.9 9E-06 1.9E-10 78.7 4.1 38 47-84 1-39 (374)
171 PRK05868 hypothetical protein; 97.9 0.0001 2.2E-09 76.7 11.7 33 49-81 3-36 (372)
172 KOG2665 Predicted FAD-dependen 97.9 8.2E-05 1.8E-09 71.8 9.6 81 218-311 202-282 (453)
173 TIGR02023 BchP-ChlP geranylger 97.9 8.6E-06 1.9E-10 85.2 3.3 31 48-78 1-32 (388)
174 PRK09897 hypothetical protein; 97.9 0.0001 2.3E-09 79.3 11.5 35 48-82 2-39 (534)
175 KOG1399 Flavin-containing mono 97.8 4.9E-05 1.1E-09 79.6 8.5 36 47-82 6-42 (448)
176 PRK06370 mercuric reductase; V 97.8 1.4E-05 3E-10 85.7 4.6 39 44-82 2-41 (463)
177 PRK07494 2-octaprenyl-6-methox 97.8 1.6E-05 3.5E-10 83.2 4.5 38 43-80 3-41 (388)
178 PRK06116 glutathione reductase 97.8 1.4E-05 3E-10 85.4 3.9 35 45-79 2-37 (450)
179 KOG1335 Dihydrolipoamide dehyd 97.8 0.00026 5.6E-09 70.3 12.0 36 46-81 38-74 (506)
180 TIGR01372 soxA sarcosine oxida 97.8 0.00016 3.5E-09 84.3 12.6 64 218-292 357-420 (985)
181 KOG2852 Possible oxidoreductas 97.8 6.1E-05 1.3E-09 71.8 7.4 39 44-82 7-52 (380)
182 PRK08010 pyridine nucleotide-d 97.8 1.7E-05 3.6E-10 84.6 3.9 35 46-80 2-37 (441)
183 PRK07538 hypothetical protein; 97.7 0.00021 4.5E-09 75.5 11.5 32 49-80 2-34 (413)
184 PRK09126 hypothetical protein; 97.7 2E-05 4.3E-10 82.7 3.7 35 47-81 3-38 (392)
185 TIGR01421 gluta_reduc_1 glutat 97.7 2E-05 4.4E-10 84.0 3.6 35 46-80 1-36 (450)
186 PRK07845 flavoprotein disulfid 97.7 0.00022 4.7E-09 76.5 11.4 31 49-79 3-34 (466)
187 PRK06115 dihydrolipoamide dehy 97.7 2.5E-05 5.4E-10 83.7 3.8 33 47-79 3-36 (466)
188 COG1249 Lpd Pyruvate/2-oxoglut 97.7 2.9E-05 6.2E-10 81.7 4.0 36 45-80 2-38 (454)
189 PF13434 K_oxygenase: L-lysine 97.7 7.4E-05 1.6E-09 76.2 6.9 64 216-288 98-162 (341)
190 KOG0029 Amine oxidase [Seconda 97.7 3.2E-05 7E-10 82.4 4.2 41 44-84 12-53 (501)
191 PRK14694 putative mercuric red 97.7 3E-05 6.6E-10 83.2 4.0 37 43-79 2-39 (468)
192 PRK07818 dihydrolipoamide dehy 97.7 3.6E-05 7.7E-10 82.6 4.5 35 46-80 3-38 (466)
193 COG2907 Predicted NAD/FAD-bind 97.7 0.00052 1.1E-08 67.4 11.9 42 46-87 7-48 (447)
194 PRK08849 2-octaprenyl-3-methyl 97.7 2.9E-05 6.2E-10 81.2 3.6 33 47-79 3-36 (384)
195 TIGR00031 UDP-GALP_mutase UDP- 97.7 3.3E-05 7.1E-10 79.5 3.9 36 48-83 2-38 (377)
196 PRK08850 2-octaprenyl-6-methox 97.7 2.9E-05 6.4E-10 81.8 3.6 34 45-78 2-36 (405)
197 PF04820 Trp_halogenase: Trypt 97.7 4.9E-05 1.1E-09 80.8 5.2 33 49-81 1-37 (454)
198 TIGR01424 gluta_reduc_2 glutat 97.6 3.1E-05 6.7E-10 82.6 3.5 33 47-79 2-35 (446)
199 TIGR03143 AhpF_homolog putativ 97.6 4.4E-05 9.6E-10 83.5 4.0 36 45-80 2-38 (555)
200 PLN02546 glutathione reductase 97.6 5.3E-05 1.2E-09 82.4 4.5 33 45-77 77-110 (558)
201 COG0492 TrxB Thioredoxin reduc 97.6 4E-05 8.6E-10 76.6 3.2 34 46-79 2-37 (305)
202 TIGR01350 lipoamide_DH dihydro 97.6 4.9E-05 1.1E-09 81.5 4.1 32 47-78 1-33 (461)
203 PTZ00367 squalene epoxidase; P 97.6 3.5E-05 7.5E-10 83.8 2.5 35 45-79 31-66 (567)
204 PRK06416 dihydrolipoamide dehy 97.6 4.8E-05 1E-09 81.6 3.5 34 46-79 3-37 (462)
205 PRK06292 dihydrolipoamide dehy 97.6 5.6E-05 1.2E-09 81.0 4.0 33 46-78 2-35 (460)
206 PTZ00153 lipoamide dehydrogena 97.5 5.7E-05 1.2E-09 83.4 3.9 32 47-78 116-148 (659)
207 PLN02507 glutathione reductase 97.5 5E-05 1.1E-09 81.9 3.3 33 45-77 23-56 (499)
208 PLN02676 polyamine oxidase 97.5 0.00011 2.4E-09 78.9 5.8 39 46-84 25-65 (487)
209 PRK06327 dihydrolipoamide dehy 97.5 6.1E-05 1.3E-09 81.0 3.6 33 45-77 2-35 (475)
210 KOG2311 NAD/FAD-utilizing prot 97.5 0.00024 5.2E-09 72.3 7.4 55 223-287 136-190 (679)
211 TIGR01790 carotene-cycl lycope 97.5 7E-05 1.5E-09 78.4 3.8 33 49-81 1-34 (388)
212 TIGR02053 MerA mercuric reduct 97.5 8E-05 1.7E-09 79.9 3.8 33 48-80 1-34 (463)
213 TIGR01423 trypano_reduc trypan 97.5 9.4E-05 2E-09 79.4 4.2 33 46-78 2-36 (486)
214 PLN02268 probable polyamine ox 97.5 8.6E-05 1.9E-09 79.0 3.9 37 49-85 2-39 (435)
215 TIGR01292 TRX_reduct thioredox 97.5 7.7E-05 1.7E-09 74.9 3.2 32 48-79 1-33 (300)
216 PF13454 NAD_binding_9: FAD-NA 97.5 0.00069 1.5E-08 61.0 9.0 30 51-80 1-36 (156)
217 PF06100 Strep_67kDa_ant: Stre 97.4 0.0035 7.5E-08 65.4 15.0 60 219-282 214-273 (500)
218 PTZ00052 thioredoxin reductase 97.4 8.8E-05 1.9E-09 80.1 3.7 33 46-78 4-37 (499)
219 TIGR02360 pbenz_hydroxyl 4-hyd 97.4 9.1E-05 2E-09 77.5 3.4 34 47-80 2-36 (390)
220 COG1231 Monoamine oxidase [Ami 97.4 0.00015 3.1E-09 74.3 4.6 40 45-84 5-45 (450)
221 PRK05732 2-octaprenyl-6-methox 97.4 0.00011 2.4E-09 77.1 3.8 33 46-78 2-38 (395)
222 PRK07233 hypothetical protein; 97.4 0.00011 2.3E-09 78.1 3.7 36 49-84 1-37 (434)
223 PLN02568 polyamine oxidase 97.4 0.00013 2.9E-09 79.0 4.4 41 44-84 2-48 (539)
224 PRK11883 protoporphyrinogen ox 97.4 0.00011 2.3E-09 78.6 3.6 35 49-83 2-39 (451)
225 PRK13748 putative mercuric red 97.4 0.00012 2.6E-09 80.7 3.8 34 46-79 97-131 (561)
226 KOG0405 Pyridine nucleotide-di 97.4 0.0012 2.6E-08 64.9 9.9 35 45-79 18-53 (478)
227 TIGR02352 thiamin_ThiO glycine 97.4 0.00052 1.1E-08 70.2 8.1 69 203-287 125-196 (337)
228 TIGR01989 COQ6 Ubiquinone bios 97.3 0.00015 3.3E-09 77.1 3.5 32 48-79 1-37 (437)
229 TIGR03197 MnmC_Cterm tRNA U-34 97.3 0.0011 2.5E-08 69.1 9.8 68 203-287 123-193 (381)
230 PLN02576 protoporphyrinogen ox 97.3 0.00024 5.1E-09 77.0 4.4 39 46-84 11-51 (496)
231 PRK10262 thioredoxin reductase 97.3 0.00023 4.9E-09 72.5 4.0 35 44-78 3-38 (321)
232 PRK05329 anaerobic glycerol-3- 97.3 0.00018 3.9E-09 75.3 3.2 33 47-79 2-35 (422)
233 COG3349 Uncharacterized conser 97.2 0.00022 4.8E-09 74.2 3.5 36 49-84 2-38 (485)
234 PRK08294 phenol 2-monooxygenas 97.2 0.00031 6.8E-09 77.9 4.8 37 44-80 29-67 (634)
235 TIGR01789 lycopene_cycl lycope 97.2 0.00029 6.2E-09 73.1 4.0 33 49-81 1-36 (370)
236 PRK13512 coenzyme A disulfide 97.2 0.0024 5.2E-08 68.0 10.9 32 49-80 3-37 (438)
237 PRK14727 putative mercuric red 97.2 0.00028 6.1E-09 75.9 3.8 37 46-82 15-52 (479)
238 PF07992 Pyr_redox_2: Pyridine 97.1 0.00032 6.9E-09 65.9 3.0 32 49-80 1-33 (201)
239 TIGR01438 TGR thioredoxin and 97.1 0.00032 7E-09 75.4 3.3 32 47-78 2-34 (484)
240 PRK05335 tRNA (uracil-5-)-meth 97.1 0.00036 7.7E-09 72.2 3.4 34 48-81 3-37 (436)
241 TIGR00562 proto_IX_ox protopor 97.1 0.0004 8.8E-09 74.5 3.8 37 48-84 3-44 (462)
242 PRK07846 mycothione reductase; 97.1 0.00048 1E-08 73.5 4.3 33 47-80 1-33 (451)
243 PRK09754 phenylpropionate diox 97.1 0.011 2.4E-07 61.9 14.5 35 47-81 3-40 (396)
244 TIGR03452 mycothione_red mycot 97.0 0.00056 1.2E-08 73.0 4.3 32 47-79 2-33 (452)
245 PRK12416 protoporphyrinogen ox 97.0 0.00044 9.6E-09 74.2 3.5 36 49-84 3-45 (463)
246 TIGR03315 Se_ygfK putative sel 97.0 0.00058 1.3E-08 78.3 4.4 38 46-83 536-574 (1012)
247 COG3075 GlpB Anaerobic glycero 97.0 0.00049 1.1E-08 67.1 3.2 34 47-80 2-36 (421)
248 TIGR02731 phytoene_desat phyto 97.0 0.00051 1.1E-08 73.5 3.6 35 49-83 1-36 (453)
249 PRK12831 putative oxidoreducta 97.0 0.0008 1.7E-08 72.0 4.7 38 45-82 138-176 (464)
250 PRK09564 coenzyme A disulfide 97.0 0.0044 9.5E-08 66.1 10.4 32 49-80 2-36 (444)
251 PLN02927 antheraxanthin epoxid 96.9 0.00061 1.3E-08 74.9 3.8 35 45-79 79-114 (668)
252 PLN02328 lysine-specific histo 96.9 0.00091 2E-08 74.9 5.0 40 45-84 236-276 (808)
253 PF00996 GDI: GDP dissociation 96.9 0.00059 1.3E-08 71.2 2.8 42 44-85 1-43 (438)
254 COG1148 HdrA Heterodisulfide r 96.8 0.00072 1.6E-08 69.2 2.9 39 46-84 123-162 (622)
255 PRK06475 salicylate hydroxylas 96.8 0.00085 1.9E-08 70.5 3.6 33 48-80 3-36 (400)
256 COG1232 HemY Protoporphyrinoge 96.8 0.00099 2.1E-08 69.6 3.5 35 49-83 2-39 (444)
257 PRK12810 gltD glutamate syntha 96.8 0.0013 2.9E-08 70.5 4.6 38 45-82 141-179 (471)
258 KOG4716 Thioredoxin reductase 96.8 0.0012 2.6E-08 64.5 3.7 37 43-79 15-52 (503)
259 TIGR01316 gltA glutamate synth 96.8 0.0014 3.1E-08 69.9 4.6 38 45-82 131-169 (449)
260 KOG2614 Kynurenine 3-monooxyge 96.7 0.0011 2.4E-08 67.0 3.4 33 47-79 2-35 (420)
261 PLN02529 lysine-specific histo 96.7 0.0012 2.6E-08 73.6 4.1 39 45-83 158-197 (738)
262 TIGR00137 gid_trmFO tRNA:m(5)U 96.7 0.0011 2.3E-08 69.2 3.2 33 49-81 2-35 (433)
263 PRK06912 acoL dihydrolipoamide 96.7 0.0013 2.8E-08 70.5 3.9 33 49-81 2-35 (458)
264 PLN02612 phytoene desaturase 96.7 0.0016 3.5E-08 71.5 4.4 38 46-83 92-130 (567)
265 TIGR02732 zeta_caro_desat caro 96.6 0.0014 3E-08 70.4 3.6 97 218-325 225-321 (474)
266 PF00070 Pyr_redox: Pyridine n 96.6 0.0022 4.8E-08 50.4 3.4 33 50-82 2-35 (80)
267 PRK12779 putative bifunctional 96.6 0.0017 3.6E-08 75.1 3.7 38 46-83 305-343 (944)
268 TIGR03219 salicylate_mono sali 96.5 0.0018 4E-08 68.3 3.6 32 49-80 2-35 (414)
269 PLN02852 ferredoxin-NADP+ redu 96.5 0.0027 5.9E-08 67.7 4.6 39 45-83 24-65 (491)
270 PRK12775 putative trifunctiona 96.5 0.0023 4.9E-08 74.6 4.2 38 46-83 429-467 (1006)
271 PRK12769 putative oxidoreducta 96.5 0.0023 5E-08 71.6 4.0 37 46-82 326-363 (654)
272 PRK11749 dihydropyrimidine deh 96.5 0.0026 5.6E-08 68.1 4.3 38 45-82 138-176 (457)
273 PRK09853 putative selenate red 96.4 0.0027 5.9E-08 72.6 4.2 39 45-83 537-576 (1019)
274 COG4529 Uncharacterized protei 96.4 0.025 5.3E-07 58.8 10.7 35 48-82 2-40 (474)
275 COG1252 Ndh NADH dehydrogenase 96.4 0.034 7.3E-07 57.5 11.7 38 48-85 4-44 (405)
276 PRK04965 NADH:flavorubredoxin 96.4 0.024 5.1E-07 59.1 11.0 33 48-80 142-175 (377)
277 PRK12778 putative bifunctional 96.4 0.0029 6.2E-08 72.1 4.4 38 45-82 429-467 (752)
278 PRK12770 putative glutamate sy 96.4 0.0035 7.5E-08 64.7 4.6 37 46-82 17-54 (352)
279 KOG0685 Flavin-containing amin 96.4 0.0033 7.1E-08 64.7 4.0 41 44-84 18-60 (498)
280 TIGR01350 lipoamide_DH dihydro 96.3 0.024 5.2E-07 60.8 10.8 33 48-80 171-204 (461)
281 PRK12814 putative NADPH-depend 96.2 0.0044 9.6E-08 69.2 4.4 37 46-82 192-229 (652)
282 PRK07818 dihydrolipoamide dehy 96.2 0.039 8.5E-07 59.2 11.3 53 224-287 225-277 (466)
283 PLN03000 amine oxidase 96.2 0.0042 9.1E-08 69.9 3.9 39 46-84 183-222 (881)
284 KOG3855 Monooxygenase involved 96.1 0.0046 1E-07 62.3 3.6 35 46-80 35-74 (481)
285 PRK05976 dihydrolipoamide dehy 96.1 0.047 1E-06 58.8 11.6 33 48-80 181-214 (472)
286 TIGR01318 gltD_gamma_fam gluta 96.0 0.0069 1.5E-07 64.9 4.8 37 46-82 140-177 (467)
287 PRK15317 alkyl hydroperoxide r 96.0 0.066 1.4E-06 58.3 12.3 56 225-290 400-456 (517)
288 PLN02976 amine oxidase 96.0 0.0059 1.3E-07 71.4 4.0 39 45-83 691-730 (1713)
289 KOG3851 Sulfide:quinone oxidor 96.0 0.065 1.4E-06 52.4 10.4 42 44-85 36-80 (446)
290 PRK06567 putative bifunctional 95.9 0.0059 1.3E-07 69.2 3.6 36 45-80 381-417 (1028)
291 PRK06912 acoL dihydrolipoamide 95.9 0.059 1.3E-06 57.7 11.2 33 48-80 171-204 (458)
292 PRK12809 putative oxidoreducta 95.9 0.0083 1.8E-07 66.9 4.6 37 46-82 309-346 (639)
293 COG1249 Lpd Pyruvate/2-oxoglut 95.8 0.055 1.2E-06 57.2 10.3 34 48-81 174-208 (454)
294 TIGR03140 AhpF alkyl hydropero 95.8 0.083 1.8E-06 57.5 12.1 55 225-289 401-456 (515)
295 COG3486 IucD Lysine/ornithine 95.8 0.048 1E-06 55.3 9.1 38 44-81 2-41 (436)
296 PRK06327 dihydrolipoamide dehy 95.8 0.083 1.8E-06 56.9 11.9 31 49-79 185-216 (475)
297 TIGR01317 GOGAT_sm_gam glutama 95.8 0.0099 2.2E-07 64.0 4.7 36 46-81 142-178 (485)
298 PRK08255 salicylyl-CoA 5-hydro 95.8 0.0065 1.4E-07 69.2 3.3 32 49-80 2-36 (765)
299 TIGR02374 nitri_red_nirB nitri 95.7 0.047 1E-06 62.4 10.0 32 50-81 1-36 (785)
300 PTZ00188 adrenodoxin reductase 95.7 0.013 2.8E-07 61.9 4.8 37 47-83 39-77 (506)
301 KOG1276 Protoporphyrinogen oxi 95.6 0.012 2.7E-07 59.6 3.9 38 46-83 10-50 (491)
302 KOG1439 RAB proteins geranylge 95.5 0.01 2.2E-07 59.7 3.2 43 44-86 1-44 (440)
303 TIGR02053 MerA mercuric reduct 95.5 0.11 2.4E-06 55.8 11.4 33 48-80 167-200 (463)
304 PRK14989 nitrite reductase sub 95.5 0.069 1.5E-06 61.3 10.3 57 223-292 198-254 (847)
305 PRK06416 dihydrolipoamide dehy 95.5 0.091 2E-06 56.4 10.8 32 49-80 174-206 (462)
306 PRK10262 thioredoxin reductase 95.5 0.16 3.6E-06 51.5 12.1 32 48-79 147-179 (321)
307 KOG2403 Succinate dehydrogenas 95.5 0.025 5.3E-07 59.2 5.8 35 46-80 54-89 (642)
308 PRK05249 soluble pyridine nucl 95.5 0.085 1.8E-06 56.6 10.3 33 48-80 176-209 (461)
309 PRK06116 glutathione reductase 95.4 0.1 2.3E-06 55.7 10.8 32 48-79 168-200 (450)
310 PRK12831 putative oxidoreducta 95.4 0.082 1.8E-06 56.6 9.9 32 48-79 282-314 (464)
311 TIGR01316 gltA glutamate synth 95.4 0.098 2.1E-06 55.8 10.5 31 49-79 274-305 (449)
312 PRK06370 mercuric reductase; V 95.4 0.12 2.6E-06 55.5 11.0 33 48-80 172-205 (463)
313 PRK12771 putative glutamate sy 95.4 0.017 3.7E-07 63.6 4.6 37 46-82 136-173 (564)
314 PRK07846 mycothione reductase; 95.3 0.098 2.1E-06 55.9 10.2 33 48-80 167-200 (451)
315 TIGR01421 gluta_reduc_1 glutat 95.3 0.1 2.2E-06 55.8 10.3 33 48-80 167-200 (450)
316 PRK06115 dihydrolipoamide dehy 95.3 0.14 3E-06 55.0 11.2 32 48-79 175-207 (466)
317 PRK13984 putative oxidoreducta 95.2 0.018 3.9E-07 64.0 4.4 38 45-82 281-319 (604)
318 PRK06467 dihydrolipoamide dehy 95.2 0.16 3.4E-06 54.7 11.4 32 49-80 176-208 (471)
319 PLN02507 glutathione reductase 95.2 0.13 2.8E-06 55.6 10.8 31 49-79 205-236 (499)
320 TIGR01424 gluta_reduc_2 glutat 95.1 0.15 3.2E-06 54.5 10.8 31 49-79 168-199 (446)
321 PRK09564 coenzyme A disulfide 95.1 0.18 3.9E-06 53.8 11.4 32 48-79 150-182 (444)
322 TIGR01292 TRX_reduct thioredox 95.1 0.26 5.7E-06 49.2 12.0 32 48-79 142-174 (300)
323 TIGR02374 nitri_red_nirB nitri 94.8 0.12 2.7E-06 59.1 9.7 32 48-79 141-173 (785)
324 PRK07845 flavoprotein disulfid 94.7 0.21 4.6E-06 53.6 10.8 32 49-80 179-211 (466)
325 COG3634 AhpF Alkyl hydroperoxi 94.7 0.016 3.5E-07 57.1 1.8 60 222-291 400-460 (520)
326 TIGR03385 CoA_CoA_reduc CoA-di 94.6 0.26 5.7E-06 52.2 11.2 33 48-80 138-171 (427)
327 PRK14727 putative mercuric red 94.6 0.16 3.5E-06 54.7 9.6 30 49-78 190-220 (479)
328 KOG1800 Ferredoxin/adrenodoxin 94.5 0.037 8E-07 55.4 3.9 37 47-83 20-59 (468)
329 KOG0399 Glutamate synthase [Am 94.5 0.025 5.4E-07 63.6 2.9 39 45-83 1783-1822(2142)
330 KOG4405 GDP dissociation inhib 94.5 0.038 8.3E-07 55.7 3.9 40 45-84 6-46 (547)
331 TIGR03452 mycothione_red mycot 94.4 0.21 4.4E-06 53.4 9.8 33 48-80 170-203 (452)
332 PTZ00318 NADH dehydrogenase-li 94.4 0.042 9E-07 58.2 4.3 38 45-82 8-46 (424)
333 PRK08010 pyridine nucleotide-d 94.2 0.23 4.9E-06 52.9 9.5 31 49-79 160-191 (441)
334 COG5044 MRS6 RAB proteins gera 94.1 0.065 1.4E-06 53.5 4.5 40 47-86 6-46 (434)
335 COG0493 GltD NADPH-dependent g 94.0 0.043 9.3E-07 58.1 3.3 37 47-83 123-160 (457)
336 PTZ00058 glutathione reductase 93.9 0.42 9.1E-06 52.3 10.9 33 48-80 238-271 (561)
337 PRK14694 putative mercuric red 93.9 0.35 7.6E-06 51.9 10.2 30 49-78 180-210 (468)
338 PRK11749 dihydropyrimidine deh 93.7 0.3 6.6E-06 52.3 9.2 32 48-79 274-307 (457)
339 TIGR01423 trypano_reduc trypan 93.7 0.44 9.6E-06 51.3 10.4 51 224-288 243-293 (486)
340 PRK13748 putative mercuric red 93.5 0.39 8.4E-06 52.9 9.9 30 49-78 272-302 (561)
341 TIGR01438 TGR thioredoxin and 93.1 0.52 1.1E-05 50.8 9.9 30 49-78 182-212 (484)
342 COG1206 Gid NAD(FAD)-utilizing 93.1 0.074 1.6E-06 52.3 2.9 34 48-81 4-38 (439)
343 PTZ00052 thioredoxin reductase 93.0 0.59 1.3E-05 50.6 10.2 30 49-78 184-214 (499)
344 TIGR03169 Nterm_to_SelD pyridi 92.9 0.095 2.1E-06 54.2 3.8 33 49-81 1-37 (364)
345 PRK12778 putative bifunctional 92.8 0.47 1E-05 54.2 9.5 31 49-79 572-604 (752)
346 PRK04965 NADH:flavorubredoxin 92.3 0.12 2.6E-06 53.8 3.7 60 218-292 189-248 (377)
347 COG4716 Myosin-crossreactive a 92.3 0.52 1.1E-05 47.3 7.6 58 219-282 234-291 (587)
348 KOG2755 Oxidoreductase [Genera 92.1 0.061 1.3E-06 51.2 1.1 47 49-95 1-50 (334)
349 PRK05329 anaerobic glycerol-3- 91.8 0.41 8.8E-06 50.4 6.8 58 218-287 265-322 (422)
350 COG0446 HcaD Uncharacterized N 91.4 0.15 3.3E-06 53.4 3.3 36 47-82 136-172 (415)
351 PF13434 K_oxygenase: L-lysine 91.3 0.75 1.6E-05 47.1 8.0 36 45-80 188-226 (341)
352 TIGR01318 gltD_gamma_fam gluta 91.1 0.96 2.1E-05 48.5 9.0 32 48-79 283-316 (467)
353 PF02558 ApbA: Ketopantoate re 90.7 0.19 4E-06 44.7 2.7 30 50-79 1-31 (151)
354 PRK12779 putative bifunctional 90.4 1.8 3.9E-05 50.5 10.9 30 49-78 449-479 (944)
355 PRK12769 putative oxidoreducta 89.8 1.9 4.1E-05 48.5 10.3 32 48-79 469-502 (654)
356 COG0569 TrkA K+ transport syst 89.7 0.28 6.1E-06 46.9 3.1 32 49-80 2-34 (225)
357 PRK09754 phenylpropionate diox 89.6 0.29 6.3E-06 51.3 3.5 34 48-81 145-179 (396)
358 PRK12775 putative trifunctiona 89.0 2.3 4.9E-05 50.1 10.5 31 48-78 572-604 (1006)
359 PF13738 Pyr_redox_3: Pyridine 88.7 0.42 9.2E-06 44.6 3.5 34 47-80 167-201 (203)
360 PF01210 NAD_Gly3P_dh_N: NAD-d 88.5 0.31 6.7E-06 43.8 2.3 30 50-79 2-32 (157)
361 PF03721 UDPG_MGDP_dh_N: UDP-g 88.4 0.39 8.5E-06 44.4 3.0 30 50-79 3-33 (185)
362 PRK05708 2-dehydropantoate 2-r 88.2 0.44 9.5E-06 48.0 3.4 32 48-79 3-35 (305)
363 PRK07251 pyridine nucleotide-d 88.1 0.41 8.9E-06 50.9 3.4 33 49-81 159-192 (438)
364 KOG0404 Thioredoxin reductase 88.0 0.4 8.8E-06 44.6 2.7 33 47-79 8-41 (322)
365 PF02737 3HCDH_N: 3-hydroxyacy 87.4 0.46 1E-05 43.7 2.8 30 50-79 2-32 (180)
366 PRK06249 2-dehydropantoate 2-r 87.2 0.63 1.4E-05 47.1 3.9 32 48-79 6-38 (313)
367 KOG1336 Monodehydroascorbate/f 87.0 3.1 6.8E-05 43.4 8.7 56 222-290 265-320 (478)
368 COG3634 AhpF Alkyl hydroperoxi 86.9 5.3 0.00012 40.0 9.7 33 47-79 354-387 (520)
369 TIGR02731 phytoene_desat phyto 85.9 1.3 2.9E-05 47.3 5.7 55 218-281 219-274 (453)
370 PF01593 Amino_oxidase: Flavin 85.7 0.46 9.9E-06 49.9 2.1 29 57-85 1-30 (450)
371 PRK13512 coenzyme A disulfide 85.5 0.68 1.5E-05 49.3 3.3 33 49-81 150-183 (438)
372 PRK01438 murD UDP-N-acetylmura 85.2 0.72 1.6E-05 49.7 3.3 31 49-79 18-49 (480)
373 KOG2018 Predicted dinucleotide 84.9 0.5 1.1E-05 46.1 1.7 36 44-80 72-109 (430)
374 PRK06292 dihydrolipoamide dehy 84.9 0.78 1.7E-05 49.1 3.4 34 48-81 170-204 (460)
375 PRK06129 3-hydroxyacyl-CoA deh 84.2 0.77 1.7E-05 46.3 2.9 31 49-79 4-35 (308)
376 PRK02705 murD UDP-N-acetylmura 84.0 0.82 1.8E-05 48.9 3.1 31 50-80 3-34 (459)
377 PRK14989 nitrite reductase sub 83.9 1.1 2.3E-05 51.8 4.1 34 49-82 5-43 (847)
378 PTZ00153 lipoamide dehydrogena 83.5 1 2.2E-05 50.3 3.6 33 49-81 314-347 (659)
379 TIGR02732 zeta_caro_desat caro 83.5 2.4 5.3E-05 45.5 6.5 35 49-83 1-36 (474)
380 PRK06522 2-dehydropantoate 2-r 83.3 0.98 2.1E-05 45.3 3.2 29 50-78 3-32 (304)
381 PRK12921 2-dehydropantoate 2-r 83.3 0.92 2E-05 45.5 3.0 28 50-77 3-31 (305)
382 KOG3923 D-aspartate oxidase [A 83.3 1 2.2E-05 44.0 3.1 32 47-78 3-42 (342)
383 TIGR03143 AhpF_homolog putativ 83.1 1.1 2.3E-05 49.4 3.6 33 48-80 144-177 (555)
384 PRK04148 hypothetical protein; 82.8 1.1 2.5E-05 38.7 2.8 32 48-80 18-50 (134)
385 COG1004 Ugd Predicted UDP-gluc 82.7 1.1 2.4E-05 45.7 3.2 31 49-79 2-33 (414)
386 PF02254 TrkA_N: TrkA-N domain 82.5 1.2 2.5E-05 37.5 2.8 30 50-79 1-31 (116)
387 PF13241 NAD_binding_7: Putati 82.0 1.3 2.7E-05 36.6 2.8 32 47-78 7-39 (103)
388 PLN02546 glutathione reductase 81.6 1.3 2.7E-05 48.6 3.4 34 48-81 253-287 (558)
389 PRK14106 murD UDP-N-acetylmura 81.5 1.2 2.7E-05 47.5 3.3 33 47-79 5-38 (450)
390 PF01488 Shikimate_DH: Shikima 81.0 1.3 2.8E-05 38.5 2.7 32 47-78 12-45 (135)
391 COG0686 Ald Alanine dehydrogen 80.6 1.7 3.7E-05 42.8 3.4 36 45-80 166-202 (371)
392 PRK08293 3-hydroxybutyryl-CoA 80.3 1.5 3.2E-05 43.7 3.2 31 49-79 5-36 (287)
393 PRK09260 3-hydroxybutyryl-CoA 80.0 1.5 3.2E-05 43.8 3.0 30 50-79 4-34 (288)
394 PRK08229 2-dehydropantoate 2-r 79.9 1.5 3.2E-05 44.9 3.1 30 49-78 4-34 (341)
395 PRK07066 3-hydroxybutyryl-CoA 79.8 1.6 3.5E-05 44.1 3.2 31 49-79 9-40 (321)
396 PRK06719 precorrin-2 dehydroge 79.6 1.8 3.8E-05 38.9 3.1 30 47-76 13-43 (157)
397 PRK06718 precorrin-2 dehydroge 79.5 1.7 3.6E-05 40.8 3.0 31 47-77 10-41 (202)
398 PF00899 ThiF: ThiF family; I 79.2 1.9 4E-05 37.5 3.1 34 48-81 3-38 (135)
399 PRK15116 sulfur acceptor prote 78.6 1.9 4.2E-05 42.2 3.3 35 47-81 30-66 (268)
400 PRK07819 3-hydroxybutyryl-CoA 78.3 2.1 4.6E-05 42.6 3.5 32 49-80 7-39 (286)
401 TIGR02354 thiF_fam2 thiamine b 77.9 2.1 4.5E-05 40.1 3.2 34 47-80 21-56 (200)
402 PRK12770 putative glutamate sy 77.8 1.8 4E-05 44.5 3.0 31 49-79 174-206 (352)
403 COG1748 LYS9 Saccharopine dehy 77.6 2.1 4.6E-05 44.1 3.4 31 49-79 3-35 (389)
404 TIGR00518 alaDH alanine dehydr 77.5 1.9 4.2E-05 44.6 3.1 32 47-78 167-199 (370)
405 cd01075 NAD_bind_Leu_Phe_Val_D 77.4 2 4.4E-05 40.2 3.0 31 48-78 29-60 (200)
406 TIGR01470 cysG_Nterm siroheme 77.2 2.1 4.6E-05 40.3 3.0 31 48-78 10-41 (205)
407 PRK07530 3-hydroxybutyryl-CoA 77.1 2.4 5.2E-05 42.3 3.6 31 49-79 6-37 (292)
408 cd01080 NAD_bind_m-THF_DH_Cycl 77.1 2.8 6.2E-05 38.0 3.7 33 46-78 43-77 (168)
409 COG2072 TrkA Predicted flavopr 77.0 2.6 5.6E-05 44.8 4.0 35 48-82 176-211 (443)
410 PRK06035 3-hydroxyacyl-CoA deh 76.7 2.2 4.7E-05 42.6 3.1 31 49-79 5-36 (291)
411 PRK07688 thiamine/molybdopteri 76.0 2.5 5.5E-05 43.1 3.4 35 47-81 24-60 (339)
412 TIGR02355 moeB molybdopterin s 75.8 3.2 6.9E-05 40.1 3.9 36 47-82 24-61 (240)
413 PRK14620 NAD(P)H-dependent gly 75.4 2.4 5.2E-05 43.1 3.1 29 50-78 3-32 (326)
414 cd01483 E1_enzyme_family Super 75.4 3 6.6E-05 36.5 3.4 33 50-82 2-36 (143)
415 PRK12475 thiamine/molybdopteri 75.4 3.3 7.1E-05 42.3 4.0 36 47-82 24-61 (338)
416 PRK07233 hypothetical protein; 75.4 4.3 9.2E-05 42.9 5.1 66 207-287 193-258 (434)
417 PLN02172 flavin-containing mon 75.1 2.8 6E-05 44.9 3.6 32 48-79 205-237 (461)
418 PRK14618 NAD(P)H-dependent gly 74.9 3 6.5E-05 42.4 3.7 31 49-79 6-37 (328)
419 PF01262 AlaDh_PNT_C: Alanine 74.8 2.6 5.6E-05 38.3 2.8 33 47-79 20-53 (168)
420 PLN02612 phytoene desaturase 74.6 4.7 0.0001 44.5 5.3 51 218-281 314-364 (567)
421 PRK12549 shikimate 5-dehydroge 74.5 2.6 5.7E-05 41.9 3.0 32 48-79 128-161 (284)
422 cd01487 E1_ThiF_like E1_ThiF_l 74.1 3.1 6.8E-05 38.0 3.2 31 50-80 2-34 (174)
423 COG1893 ApbA Ketopantoate redu 73.9 2.6 5.7E-05 42.3 2.9 31 50-80 3-34 (307)
424 PRK05808 3-hydroxybutyryl-CoA 73.8 2.6 5.7E-05 41.8 2.9 31 49-79 5-36 (282)
425 PRK12548 shikimate 5-dehydroge 73.8 2.7 5.8E-05 41.9 2.9 32 48-79 127-160 (289)
426 cd05311 NAD_bind_2_malic_enz N 73.7 2.6 5.5E-05 40.4 2.6 33 48-80 26-62 (226)
427 TIGR01381 E1_like_apg7 E1-like 73.5 3 6.5E-05 45.7 3.3 39 47-85 338-378 (664)
428 TIGR03026 NDP-sugDHase nucleot 73.4 3.2 6.9E-05 43.7 3.5 31 49-79 2-33 (411)
429 TIGR01763 MalateDH_bact malate 73.4 3 6.6E-05 41.9 3.2 30 49-78 3-34 (305)
430 cd00401 AdoHcyase S-adenosyl-L 73.3 3 6.6E-05 43.6 3.2 33 47-79 202-235 (413)
431 cd01486 Apg7 Apg7 is an E1-lik 73.3 3.4 7.5E-05 41.0 3.4 34 50-83 2-37 (307)
432 PRK11064 wecC UDP-N-acetyl-D-m 72.6 3.2 7E-05 43.7 3.3 31 49-79 5-36 (415)
433 COG0281 SfcA Malic enzyme [Ene 72.3 4.4 9.6E-05 41.7 4.0 35 47-81 199-237 (432)
434 PRK06130 3-hydroxybutyryl-CoA 71.7 3.9 8.5E-05 41.2 3.6 31 49-79 6-37 (311)
435 PRK00094 gpsA NAD(P)H-dependen 71.7 3.5 7.6E-05 41.7 3.3 31 49-79 3-34 (325)
436 PTZ00318 NADH dehydrogenase-li 71.7 3.3 7.1E-05 43.9 3.1 33 49-81 175-222 (424)
437 PRK08328 hypothetical protein; 71.6 3.6 7.8E-05 39.5 3.1 34 47-80 27-62 (231)
438 TIGR02356 adenyl_thiF thiazole 71.5 3.9 8.5E-05 38.3 3.3 36 46-81 20-57 (202)
439 TIGR03736 PRTRC_ThiF PRTRC sys 71.4 3.9 8.5E-05 39.5 3.3 37 45-81 9-57 (244)
440 PRK05690 molybdopterin biosynt 71.4 3.6 7.8E-05 39.9 3.1 34 47-80 32-67 (245)
441 TIGR02853 spore_dpaA dipicolin 70.6 3.6 7.8E-05 40.9 3.0 33 47-79 151-184 (287)
442 cd00757 ThiF_MoeB_HesA_family 70.2 4 8.7E-05 39.1 3.1 34 47-80 21-56 (228)
443 PRK02472 murD UDP-N-acetylmura 69.9 3.5 7.7E-05 43.9 3.0 31 49-79 7-38 (447)
444 cd05292 LDH_2 A subgroup of L- 69.9 4.1 9E-05 41.0 3.2 31 49-79 2-35 (308)
445 PF13478 XdhC_C: XdhC Rossmann 69.7 4.3 9.3E-05 35.4 2.9 31 50-80 1-32 (136)
446 PRK08644 thiamine biosynthesis 69.6 5 0.00011 38.0 3.6 35 47-81 28-64 (212)
447 KOG1346 Programmed cell death 68.8 42 0.00091 34.8 9.8 136 37-281 168-309 (659)
448 cd05291 HicDH_like L-2-hydroxy 68.2 4.8 0.0001 40.5 3.3 31 50-80 3-36 (306)
449 COG3075 GlpB Anaerobic glycero 68.2 6.3 0.00014 39.3 3.9 53 220-284 266-318 (421)
450 TIGR01915 npdG NADPH-dependent 68.1 4.9 0.00011 38.2 3.2 30 50-79 3-34 (219)
451 PLN02353 probable UDP-glucose 68.1 4.9 0.00011 43.0 3.5 31 49-79 3-36 (473)
452 TIGR00936 ahcY adenosylhomocys 68.0 4.9 0.00011 41.9 3.4 33 47-79 195-228 (406)
453 PRK14619 NAD(P)H-dependent gly 67.8 5.1 0.00011 40.3 3.4 30 49-78 6-36 (308)
454 PLN02545 3-hydroxybutyryl-CoA 67.6 5.6 0.00012 39.7 3.7 31 49-79 6-37 (295)
455 PLN02520 bifunctional 3-dehydr 67.4 4.4 9.6E-05 44.1 3.0 31 48-78 380-411 (529)
456 PRK06153 hypothetical protein; 67.3 5.8 0.00013 40.8 3.6 36 47-82 176-213 (393)
457 PRK10669 putative cation:proto 66.5 5.3 0.00012 43.9 3.5 34 47-80 417-451 (558)
458 cd01485 E1-1_like Ubiquitin ac 66.2 5.6 0.00012 37.2 3.1 34 47-80 19-54 (198)
459 TIGR02279 PaaC-3OHAcCoADH 3-hy 66.2 4.9 0.00011 43.4 3.1 32 49-80 7-39 (503)
460 KOG2304 3-hydroxyacyl-CoA dehy 66.1 6.4 0.00014 37.0 3.3 36 45-80 9-45 (298)
461 PRK09496 trkA potassium transp 65.9 5.1 0.00011 42.8 3.1 31 49-79 2-33 (453)
462 cd01484 E1-2_like Ubiquitin ac 65.8 5.6 0.00012 38.2 3.1 33 50-82 2-36 (234)
463 PRK15057 UDP-glucose 6-dehydro 65.4 5.7 0.00012 41.4 3.3 30 50-79 3-32 (388)
464 PRK14027 quinate/shikimate deh 65.4 5.5 0.00012 39.5 3.0 31 48-78 128-160 (283)
465 PRK08017 oxidoreductase; Provi 65.0 6.2 0.00013 38.1 3.3 30 50-79 5-36 (256)
466 TIGR00507 aroE shikimate 5-deh 64.9 5.9 0.00013 39.0 3.2 31 48-78 118-149 (270)
467 cd05191 NAD_bind_amino_acid_DH 64.8 6.9 0.00015 30.9 3.0 30 48-77 24-55 (86)
468 PRK08306 dipicolinate synthase 64.8 5.9 0.00013 39.6 3.1 33 47-79 152-185 (296)
469 KOG2495 NADH-dehydrogenase (ub 64.8 3.8 8.3E-05 42.3 1.8 30 50-79 221-265 (491)
470 PRK05476 S-adenosyl-L-homocyst 64.7 5.9 0.00013 41.6 3.2 34 47-80 212-246 (425)
471 cd01492 Aos1_SUMO Ubiquitin ac 64.5 6.3 0.00014 36.8 3.1 34 47-80 21-56 (197)
472 PRK08223 hypothetical protein; 64.5 7.7 0.00017 38.4 3.8 36 47-82 27-64 (287)
473 PRK07417 arogenate dehydrogena 64.4 5.5 0.00012 39.5 2.8 31 49-79 2-33 (279)
474 COG1250 FadB 3-hydroxyacyl-CoA 64.3 6.5 0.00014 39.3 3.3 31 49-79 5-36 (307)
475 PRK12550 shikimate 5-dehydroge 64.1 5.7 0.00012 39.1 2.9 31 49-79 124-156 (272)
476 PRK11730 fadB multifunctional 64.0 5.9 0.00013 44.9 3.3 31 49-79 315-346 (715)
477 PRK09424 pntA NAD(P) transhydr 63.6 5.9 0.00013 42.6 3.0 33 47-79 165-198 (509)
478 cd01078 NAD_bind_H4MPT_DH NADP 63.4 7 0.00015 36.3 3.2 31 48-78 29-61 (194)
479 PRK07531 bifunctional 3-hydrox 63.3 6.3 0.00014 42.6 3.3 31 49-79 6-37 (495)
480 PTZ00082 L-lactate dehydrogena 63.3 9 0.0002 38.8 4.2 34 47-80 6-41 (321)
481 PLN02494 adenosylhomocysteinas 63.2 6.8 0.00015 41.5 3.3 34 47-80 254-288 (477)
482 COG1179 Dinucleotide-utilizing 63.1 8.3 0.00018 36.8 3.5 40 47-86 30-71 (263)
483 TIGR02437 FadB fatty oxidation 63.0 6.3 0.00014 44.7 3.3 32 48-79 314-346 (714)
484 COG1252 Ndh NADH dehydrogenase 62.9 8.6 0.00019 40.0 4.0 51 517-570 281-332 (405)
485 PRK00258 aroE shikimate 5-dehy 62.5 6.5 0.00014 38.9 3.0 32 48-79 124-157 (278)
486 cd00755 YgdL_like Family of ac 62.1 7.3 0.00016 37.3 3.1 35 47-81 11-47 (231)
487 TIGR01809 Shik-DH-AROM shikima 62.0 7 0.00015 38.8 3.1 32 47-78 125-158 (282)
488 PRK08268 3-hydroxy-acyl-CoA de 62.0 6.8 0.00015 42.5 3.2 32 49-80 9-41 (507)
489 PRK06505 enoyl-(acyl carrier p 61.8 7.8 0.00017 38.1 3.4 30 49-78 9-42 (271)
490 cd01339 LDH-like_MDH L-lactate 61.8 6.3 0.00014 39.5 2.8 30 50-79 1-32 (300)
491 cd01488 Uba3_RUB Ubiquitin act 61.4 7.1 0.00015 38.8 2.9 31 50-80 2-34 (291)
492 cd01489 Uba2_SUMO Ubiquitin ac 61.3 8 0.00017 38.9 3.3 33 50-82 2-36 (312)
493 PRK08762 molybdopterin biosynt 61.0 7.4 0.00016 40.4 3.2 34 47-80 135-170 (376)
494 PRK08177 short chain dehydroge 60.7 9.1 0.0002 36.2 3.6 31 50-80 4-36 (225)
495 COG2085 Predicted dinucleotide 60.6 7.7 0.00017 36.2 2.8 29 50-78 4-33 (211)
496 PRK06223 malate dehydrogenase; 60.5 8.1 0.00018 38.8 3.3 30 49-78 4-35 (307)
497 cd05312 NAD_bind_1_malic_enz N 60.2 10 0.00022 37.3 3.7 35 47-81 25-71 (279)
498 PF00670 AdoHcyase_NAD: S-aden 60.1 6.2 0.00013 35.4 2.0 32 48-79 24-56 (162)
499 PRK12810 gltD glutamate syntha 59.9 19 0.00041 38.7 6.2 62 220-291 337-409 (471)
500 PRK04308 murD UDP-N-acetylmura 59.8 8.2 0.00018 41.1 3.4 32 49-80 7-39 (445)
No 1
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=3.6e-80 Score=665.90 Aligned_cols=541 Identities=59% Similarity=1.002 Sum_probs=403.2
Q ss_pred cceeecCCCCccccccccccCC----------CCcccEEEECCCcchhHHHHhhcCCCeEEEEeccCCCCCCCCcccchh
Q 008163 23 FCACQKAAPNYSFMHNATAAQP----------VSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGS 92 (575)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~DvIIVGsG~aG~~~A~~La~G~~VlvLE~G~~~~~~~~~~~~~~ 92 (575)
-|......-.|+|+.++...+. ...|||||||+|.+||++|.+|+++.+|||||+|+....++.+..+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~~~~~~~~~~~~~ 100 (587)
T PLN02785 21 QGKSHFTPYRYPFIDKASSFSSSSSSSSSSGGDSAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGVPFGNANVSFLEN 100 (587)
T ss_pred hccccCCccCCchhhccccccccccccccccccccCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCCCCCCchhhhHHh
Confidence 3444456667788888887776 567999999999999999999999889999999986433344433344
Q ss_pred hhhccCCCCCCCCCCcccCCCcccccCcceecchhhcccceecCCChhhhhcCCCChhhhhhhhhhhhhhcccCCCCchh
Q 008163 93 FGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVREVGWDERLVNESYQWVEKVVAFEPPMRQW 172 (575)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~~ 172 (575)
+.....+|.+.+.++....++++.+.||++|||+|.+|++.|.|+++++++..||+|+.+.++|++.|+.+...|...++
T Consensus 101 ~~~~~~d~~~~~~~q~~~~~~~~~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~~GW~~~~~~~~~~~~e~~~~~~~~~~~~ 180 (587)
T PLN02785 101 FHIGLADTSPTSASQAFISTDGVINARARVLGGGTCINAGFYSRASTRFIQKAGWDAKLVNESYPWVERQIVHWPKVAPW 180 (587)
T ss_pred hCCcccccCCccccccccCCCceeccccceecchhhhcCeEEEeCCHHHhccCCCCcccccchHHHHhcccccCCCcChH
Confidence 43444578888888877778889999999999999999999999999888888999999999999999866555666778
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEECCCCccccHHHhhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEE
Q 008163 173 QSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHG 252 (575)
Q Consensus 173 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~G 252 (575)
...+.+++.+.|++++++...++..|...+..+++..|.|+++..+++.+++.|++|++++.|++|++++++ ...+++|
T Consensus 181 ~~~~~~a~~e~G~~~~n~~~~d~~~G~~~g~~i~~~~g~R~saa~l~~~~~~~nl~Vl~~a~V~rIl~~~~~-~~~ra~G 259 (587)
T PLN02785 181 QAALRDSLLEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNPNKLRVLLHATVQKIVFDTSG-KRPRATG 259 (587)
T ss_pred HHHHHHHHHHcCCCccCCCCCCCccceeeeEEEeCCCCEEcCHHHHHhhcCCCCeEEEeCCEEEEEEEcCCC-CCceEEE
Confidence 889999999999988887766767677777777778899999888877788899999999999999998641 2248999
Q ss_pred EEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHhhc--------CCCceeeecCCccCCCCCCCCCceEEeeCCCc
Q 008163 253 VVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVP 324 (575)
Q Consensus 253 V~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~Sg--------~~gi~~~~~~p~vG~~l~dh~~~~~~~~~~~~ 324 (575)
|++.+.+|+.+++.+...++++||||||+|+||+|||+|| ++||+++.++|.||+||+|||...+.+..+.+
T Consensus 260 V~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~i~~~~~~~ 339 (587)
T PLN02785 260 VIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPSKAP 339 (587)
T ss_pred EEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccceEEEeCCC
Confidence 9998766765554322224689999999999999999999 89999999999999999999999988876654
Q ss_pred ccchhhHhhcccccchhhhhccCCcccCCCCCCCCCCCcccccccccCCCCCCCCHHHHHHHHhhhccCCCCCccceeEE
Q 008163 325 VEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFIL 404 (575)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (575)
......+.......+.|.....++..... .+....+.+....+.+...++....++.++.++......+...+....+.
T Consensus 340 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (587)
T PLN02785 340 VEQSLIQTVGITKMGVYIEASSGFGQSPD-SIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHEAFNGGFIL 418 (587)
T ss_pred chhhhHhhhhhhccccceecccccccCch-hhhhhccccccccccccccCcccccchhhhhhccCcccccccccccceEE
Confidence 32222222222222233322222110000 00001111111111111112222223323333211111111111112445
Q ss_pred eeecccCcceEEEccCCCCCCCCeeecCCCCCHHHHHHHHHHHHHHHHHHhcccccccccccC-cchhhhccccCCCCcC
Q 008163 405 EKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESM-SVPILVNMTASAPVNL 483 (575)
Q Consensus 405 ~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 483 (575)
..+..|.|||+|+|+++||.+.|.|+++|+.+|.|++.+.++++.+++++++..+..+...+. +.+.+.+.....+++.
T Consensus 419 ~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (587)
T PLN02785 419 EKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINL 498 (587)
T ss_pred EEecCCCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhcccccccccccccccccccccc
Confidence 677899999999999999999999999999999999999999999999999988777653321 1111111111112334
Q ss_pred CCCCCCCHHHHHHHHHhcccccccccccccCCcccCCCCeEeccCCceeeeccCCCCCCCCchHHHHHHHHHhhHHHHHH
Q 008163 484 LPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYVNLTTSK 563 (575)
Q Consensus 484 ~p~~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG~VVD~~~rv~g~~nL~V~DaSv~P~~~~~NP~lTi~Ala~r~a~~i~~ 563 (575)
.|...+++++|++|+++...+.||++|||+||+|||+++||||++||||||+||||..|++||++|+||||+|+|++|++
T Consensus 499 ~p~~~~~d~~l~~~ir~~~~t~~H~~GTc~MG~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~ 578 (587)
T PLN02785 499 IPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILR 578 (587)
T ss_pred CCCCCCCHHHHHHHHHHhcccccCCcccccCCCeECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 45555678999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HH
Q 008163 564 YV 565 (575)
Q Consensus 564 ~~ 565 (575)
++
T Consensus 579 ~~ 580 (587)
T PLN02785 579 ER 580 (587)
T ss_pred Hh
Confidence 86
No 2
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=100.00 E-value=1.4e-78 Score=626.69 Aligned_cols=499 Identities=39% Similarity=0.550 Sum_probs=374.5
Q ss_pred ccccccccCCCCcccEEEECCCcchhHHHHhhcC--CCeEEEEeccCCCCCCCCcccchhhhhcc----CCCCCCCCCCc
Q 008163 35 FMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYGNPNITNLGSFGAAL----SDLSSTSPSQR 108 (575)
Q Consensus 35 ~~~~~~~~~~~~~~DvIIVGsG~aG~~~A~~La~--G~~VlvLE~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 108 (575)
++..........+||+||||||.|||++|.+|+| ..||||||+|+.. +...+++.+...+ .+|.|.+.++.
T Consensus 45 ~~~~~~~~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~---~~~~~~p~~~~~~q~s~~dw~y~t~Ps~ 121 (623)
T KOG1238|consen 45 RPSDATGSELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP---PLYSDPPLLAANLQLSLYDWSYHTEPSQ 121 (623)
T ss_pred ccccccccccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC---cccccchHHHHHhccccccccCcCccCh
Confidence 3333343446678999999999999999999999 5999999999876 2333433443333 37998888876
Q ss_pred c----cCCCcccccCcceecchhhcccceecCCChhhhh----c--CCCChhhhhhhhhhhhhhcccCCCC---------
Q 008163 109 F----ISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVR----E--VGWDERLVNESYQWVEKVVAFEPPM--------- 169 (575)
Q Consensus 109 ~----~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~----~--~gw~~~~l~~~~~~~~~~~~~~~~~--------- 169 (575)
. ..++...|+|||++||+|.+|+|+|.|+++.+++ . .||+|+++.+||+++|+.....+..
T Consensus 122 ~ac~~m~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~ 201 (623)
T KOG1238|consen 122 HACLAMSEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGP 201 (623)
T ss_pred hhhhhhcCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCc
Confidence 5 6788899999999999999999999999964433 2 5699999999999999875544432
Q ss_pred ---------chhHHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeE---ECCCCccccHHH-hhh-hcC-CCCeEEEcCcE
Q 008163 170 ---------RQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTI---FDQNGQRHTAAD-LLE-YAN-PSGLTLLLHAS 234 (575)
Q Consensus 170 ---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~g~r~~~~~-~l~-~~~-~~g~~v~~~~~ 234 (575)
.+....+.++..+.|...+ |..+....+..+ ..++|.|+++.. |++ ... ++|+.+..++.
T Consensus 202 ~~ve~~~~~~~~~~~~~~ag~e~G~~~~-----D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~ 276 (623)
T KOG1238|consen 202 LLVEAGVYPNNLFTAFHRAGTEIGGSIF-----DRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAA 276 (623)
T ss_pred ceeccccccCchhhHhHHhHHhcCCCcc-----CCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccce
Confidence 2234556666667763311 111222222221 236788887765 766 333 77999999999
Q ss_pred EEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHhhc--------CCCceeeecCCccC
Q 008163 235 VHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVG 306 (575)
Q Consensus 235 V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~Sg--------~~gi~~~~~~p~vG 306 (575)
|++|..|..+ .++.||++....|+.++++ +.|+||||||+|+||||||+|| +.|||++.++|.||
T Consensus 277 vtrvl~D~~~---~~a~gv~~~~~~~~~~~v~----a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG 349 (623)
T KOG1238|consen 277 VTRVLIDPAG---KRAKGVEFVRDGGKEHTVK----ARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVG 349 (623)
T ss_pred EEEEEEcCCC---ceEEEEEEEecCceeeeec----ccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccc
Confidence 9999999543 3999999996437888887 7899999999999999999999 99999999999999
Q ss_pred CCCCCCCCceEEeeCCCcccchhhHhhcccccchhhhhccCCcccCCCCCCCCCCCcccccccccCCCCC----------
Q 008163 307 QGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPK---------- 376 (575)
Q Consensus 307 ~~l~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 376 (575)
+||+||+...+....+.+......+..++.....|+....|+..... ...++++...........|+
T Consensus 350 ~nLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~G~~~~~~---~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~ 426 (623)
T KOG1238|consen 350 QNLQDHPMNPGFVFSTNPVELSLIRLVGITTVGQYLEGGSGPLASPG---VETLGFINTVSSNLSLDWPDIELHFVAGSL 426 (623)
T ss_pred cccccccccceeeecCCCccccccccccchHHHHHHHcCCCCcccCc---ceeeEEeccccccCcCCCCCeeEEeccccc
Confidence 99999999988877766654444444555555667777666543211 00011111110000000000
Q ss_pred --CC-------CHHHHHHHHhhhccCCCCCccceeEEeeecccCcceEEEccCCCCCCCCeeecCCCCCHHHHHHHHHHH
Q 008163 377 --QR-------TPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGI 447 (575)
Q Consensus 377 --~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~ 447 (575)
.. ..++++..+.... ....+.++..+.+|.|+|+|.|+++||.+.|+|++||+.+|+|++.+.+++
T Consensus 427 ~~~~~~~~~~~~~~~y~~~~~~~~-----~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi 501 (623)
T KOG1238|consen 427 SSDGLTALRKALGEIYQALFGELT-----NSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGI 501 (623)
T ss_pred cccchhhhhhhcchHHHHhhhhhh-----cCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHH
Confidence 00 0012222221111 112356777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccccCcchhhhccccCCCCcCCCC----CCCCHHHHHHHHHhcccccccccccccCC------cc
Q 008163 448 STIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPR----HSNASTSLEQFCRDTVMTIWHYHGGCQVG------KV 517 (575)
Q Consensus 448 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG------~V 517 (575)
+.+.++.++.+|+++...+... ..|. ...+|+.|+||+|....|.||+.|||+|| +|
T Consensus 502 ~~~~~l~~s~af~~~~~r~~~~-------------~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aV 568 (623)
T KOG1238|consen 502 RTIIRLSNSKAFQRFGARLWKK-------------PVPGCDLLAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAV 568 (623)
T ss_pred HHHHHHHcCHHHHHhcchhccc-------------cCCCcccccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcc
Confidence 9999999999999988766311 1121 35689999999999999999999999999 89
Q ss_pred cCCCCeEeccCCceeeeccCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Q 008163 518 VDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYVNLTTSKYVSKIL 569 (575)
Q Consensus 518 VD~~~rv~g~~nL~V~DaSv~P~~~~~NP~lTi~Ala~r~a~~i~~~~~~~~ 569 (575)
||+++||||++||||+||||||.+|++||++|+||||||+|+.|++++....
T Consensus 569 VD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~~~~ 620 (623)
T KOG1238|consen 569 VDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWLANK 620 (623)
T ss_pred cCCcceeccccCceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhhhcC
Confidence 9999999999999999999999999999999999999999999999976543
No 3
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=1.5e-69 Score=589.34 Aligned_cols=487 Identities=26% Similarity=0.349 Sum_probs=342.0
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC--CCeEEEEeccCCCC-CCCCcccchhhhhc----cCCCCCCCCCCcccCCCccc
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPY-GNPNITNLGSFGAA----LSDLSSTSPSQRFISEDGVI 116 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~--G~~VlvLE~G~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 116 (575)
+.++|||||||||++|+++|.+|++ |.+|||||+|+... .......+..+... ..+|.|.+.++....++.+.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 81 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPHMNNRRME 81 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCCCCCCeee
Confidence 4567999999999999999999999 89999999997532 12222233222111 12466666777777777888
Q ss_pred ccCcceecchhhcccceecCCChhhhhc-------CCCChhhhhhhhhhhhhhccc-------------C---CCCchhH
Q 008163 117 NSRARVLGGGSCLNAGFYTRAAPYYVRE-------VGWDERLVNESYQWVEKVVAF-------------E---PPMRQWQ 173 (575)
Q Consensus 117 ~~~g~~lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~l~~~~~~~~~~~~~-------------~---~~~~~~~ 173 (575)
+.+|++|||+|.+|++.+.|+.+.+++. .+|+|++++|||+++|+...- . ....+..
T Consensus 82 ~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~~~~~g~~gp~~~~~~~~~~~~~~ 161 (560)
T PRK02106 82 CPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGEDDYRGGDGPLSVTRGKPGTNPLF 161 (560)
T ss_pred cccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCCccccCCCCCEEEeCCCCCCCHHH
Confidence 9999999999999999999999875542 479999999999999986511 0 1123345
Q ss_pred HHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEECCCCccccHHH-hhh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeEE
Q 008163 174 SAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAAD-LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAH 251 (575)
Q Consensus 174 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~-~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~ 251 (575)
..+.++++++|++...........++...... ..+|.|+++.. |++ +.++.|++|++++.|++|+++++ +++
T Consensus 162 ~~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~~-~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~~-----~a~ 235 (560)
T PRK02106 162 QAFVEAGVQAGYPRTDDLNGYQQEGFGPMDRT-VTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEGK-----RAV 235 (560)
T ss_pred HHHHHHHHHcCCCcCCCCCCCCCceeEEEeee-cCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEeCC-----eEE
Confidence 67888889999875433221111222111111 25788877765 776 44578999999999999999855 999
Q ss_pred EEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHhhc--------CCCceeeecCCccCCCCCCCCCceEEeeCCC
Q 008163 252 GVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 323 (575)
Q Consensus 252 GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~Sg--------~~gi~~~~~~p~vG~~l~dh~~~~~~~~~~~ 323 (575)
||++.+.++ ..++. ++|+||||||+++||+|||+|| ++||+++.++|+||+||+||+...+.+.++.
T Consensus 236 GV~~~~~~~-~~~~~----~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~~~~~~~~~ 310 (560)
T PRK02106 236 GVEYERGGG-RETAR----ARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVYIQYECKQ 310 (560)
T ss_pred EEEEEeCCc-EEEEE----eeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccceEEEEeCC
Confidence 999987443 33443 6899999999999999999999 8899999999999999999999988887665
Q ss_pred cccchh-hHhhcc-cccchhhhhccCCcccCCCCCCCCCCCcccccccccCCCCCCCCHHHHHHHHhhhccCCCCCccce
Q 008163 324 PVEVSL-IQVVGI-TQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGG 401 (575)
Q Consensus 324 ~~~~~~-~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (575)
+..... ...... .....|.....|..... .....++.... .... .+.... ..+...+...... ......+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~-~~~~--~p~~~~-~~~~~~~~~~~~~-~~~~~~~ 382 (560)
T PRK02106 311 PVSLYPALKWWNKPKIGAEWLFTGTGLGASN---HFEAGGFIRSR-AGVD--WPNIQY-HFLPVAIRYDGSN-AVKGHGF 382 (560)
T ss_pred CcccccccchhhhhHHHHHHHhcCCCCcccc---ccceeeEEecC-CCCC--CCCeEE-EEeeccccccCCC-CCCCCeE
Confidence 432100 000000 00012222222221000 00000000000 0000 000000 0000000000000 0001123
Q ss_pred eEEeeecccCcceEEEccCCCCCCCCeeecCCCCCHHHHHHHHHHHHHHHHHHhcccccccccccCcchhhhccccCCCC
Q 008163 402 FILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPV 481 (575)
Q Consensus 402 ~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (575)
++...+.+|.|+|+|+|+++|+++.|.|+++|+.++.|++.+.++++.+++++++.++..+...+
T Consensus 383 ~~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~--------------- 447 (560)
T PRK02106 383 QAHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGRE--------------- 447 (560)
T ss_pred EEEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccccc---------------
Confidence 44445678999999999999999999999999999999999999999999999988766543222
Q ss_pred cCCCC-CCCCHHHHHHHHHhcccccccccccccCC----cccCCCCeEeccCCceeeeccCCCCCCCCchHHHHHHHHHh
Q 008163 482 NLLPR-HSNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRY 556 (575)
Q Consensus 482 ~~~p~-~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG----~VVD~~~rv~g~~nL~V~DaSv~P~~~~~NP~lTi~Ala~r 556 (575)
..|. ..++++++++|++....+.+|++|||||| +|||+++||||++||||+|+||||+.+++||++|+||||+|
T Consensus 448 -~~p~~~~~~~~~~~~~i~~~~~~~~H~~GTcrMG~d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaer 526 (560)
T PRK02106 448 -ISPGADVQTDEEIDAFVREHAETAYHPSCTCKMGTDPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEK 526 (560)
T ss_pred -cCCCcccCCHHHHHHHHHhccCcCcccCCCeecCCCCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHH
Confidence 2332 23678899999999989999999999999 69999999999999999999999999999999999999999
Q ss_pred hHHHHHHHH
Q 008163 557 VNLTTSKYV 565 (575)
Q Consensus 557 ~a~~i~~~~ 565 (575)
+||+|+++.
T Consensus 527 aAd~I~~~~ 535 (560)
T PRK02106 527 AADLIRGRT 535 (560)
T ss_pred HHHHHhccC
Confidence 999999876
No 4
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=2.4e-68 Score=576.82 Aligned_cols=481 Identities=26% Similarity=0.360 Sum_probs=336.9
Q ss_pred cEEEECCCcchhHHHHhhcC-C-CeEEEEeccCCCCC-CCCcccchhhhh----ccCCCCCCCCCCcccCCCcccccCcc
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPYG-NPNITNLGSFGA----ALSDLSSTSPSQRFISEDGVINSRAR 121 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~ 121 (575)
||||||||++|+++|.+|++ + .||||||+|+.... ......+..+.. ...+|.|.+.++.+..++.+.+++|+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 80 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPHMNNRRVGHARGK 80 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCCCCCceEeeeccc
Confidence 89999999999999999999 7 79999999975321 122222222111 11256677777777777888999999
Q ss_pred eecchhhcccceecCCChhhhhc-------CCCChhhhhhhhhhhhhhcccC---------------CCCchhHHHHHHH
Q 008163 122 VLGGGSCLNAGFYTRAAPYYVRE-------VGWDERLVNESYQWVEKVVAFE---------------PPMRQWQSAVRDG 179 (575)
Q Consensus 122 ~lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 179 (575)
+|||+|.+|++.+.|+.+.+++. .+|.|+++.+||+++|...... +...+....+.++
T Consensus 81 ~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~~~~~g~~G~~~v~~~~~~~~~~~~~~~a 160 (532)
T TIGR01810 81 VLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEA 160 (532)
T ss_pred ccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCCcccCCCCCCEEEecCCCCCHHHHHHHHH
Confidence 99999999999999999865432 4799999999999999765310 1123345678888
Q ss_pred HHHcCCCCCCCCCcCCCCcceeeeeEECCCCccccHHH-hhhhc-CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe
Q 008163 180 LVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAAD-LLEYA-NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD 257 (575)
Q Consensus 180 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~~~-~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~ 257 (575)
++++|++...........++...... ..+|.|+++.. |++.+ ++.|++|+++++|++|+++++ +++||++.+
T Consensus 161 ~~~~G~~~~~~~~~~~~~g~~~~~~~-~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~-----ra~GV~~~~ 234 (532)
T TIGR01810 161 GVEAGYNKTPDVNGFRQEGFGPMDST-VHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEGN-----RATGVEFKK 234 (532)
T ss_pred HHHcCCCccCCCCCCCccceEEEEEE-cCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEecCC-----eEEEEEEEe
Confidence 88999875433221111122111112 25788887765 77744 478999999999999999865 999999986
Q ss_pred CCCceeEEeeecCCCcEEEEccCCcCcHHHHHhhc--------CCCceeeecCCccCCCCCCCCCceEEeeCCCcccchh
Q 008163 258 ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSL 329 (575)
Q Consensus 258 ~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~Sg--------~~gi~~~~~~p~vG~~l~dh~~~~~~~~~~~~~~~~~ 329 (575)
.+...++. ++|+||||||+++||+||++|| +.||+++.++|.||+||+||+...+.+.++.+.....
T Consensus 235 -~~~~~~~~----~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~~~~~~~~~~~~~~~ 309 (532)
T TIGR01810 235 -GGRKEHTE----ANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVYVQHACKQPVSLYP 309 (532)
T ss_pred -CCcEEEEE----EeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccceeEEEecCCccccc
Confidence 34434444 6899999999999999999999 8899999999999999999999988887665432100
Q ss_pred -hHhhc-ccccchhhhhccCCcccCCCCCCCCCCCcccccccccCCCCCCCCHHHHHHHHhhhccCCCCCccceeEEeee
Q 008163 330 -IQVVG-ITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKV 407 (575)
Q Consensus 330 -~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (575)
..... ......|.....|...... +. ..++...... . ..+.... ..+. +..............+++....
T Consensus 310 ~~~~~~~~~~~~~~~~~~~g~~~~~~--~~-~~~~~~~~~~-~--~~p~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~ 381 (532)
T TIGR01810 310 SLNWLKQPFIGAQWLFGRKGAGASNH--FE-GGGFVRSNDD-V--DYPNIQY-HFLP-VAIRYDGTKAPKAHGFQVHVGP 381 (532)
T ss_pred ccchhhhhHHHHHHHhcCCCCccccc--cc-eeEEEecCCC-C--CCCCeEE-EEEe-eeeccCCCCCCCCCcEEEEEee
Confidence 00000 0000122222222211000 00 0000000000 0 0000000 0000 0000000000001122344456
Q ss_pred cccCcceEEEccCCCCCCCCeeecCCCCCHHHHHHHHHHHHHHHHHHhcccccccccccCcchhhhccccCCCCcCCC-C
Q 008163 408 MGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLP-R 486 (575)
Q Consensus 408 ~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ 486 (575)
..|.|||+|+|+++|+.+.|.|+++|+.+|.|++.+.++++.+++++++.++..+...+ ..| .
T Consensus 382 ~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------~~p~~ 445 (532)
T TIGR01810 382 MYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGE----------------ISPGP 445 (532)
T ss_pred cCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhccccc----------------cCCCC
Confidence 78999999999999999999999999999999999999999999999987766543222 223 2
Q ss_pred CCCCHHHHHHHHHhcccccccccccccCC------cccCCCCeEeccCCceeeeccCCCCCCCCchHHHHHHHHHhhHHH
Q 008163 487 HSNASTSLEQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYVNLT 560 (575)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG------~VVD~~~rv~g~~nL~V~DaSv~P~~~~~NP~lTi~Ala~r~a~~ 560 (575)
..+++++|++|++....+.+|++|||||| +|||+++||||++||||||+||||+.+++||++|+||||+|+||+
T Consensus 446 ~~~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~ 525 (532)
T TIGR01810 446 EVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADI 525 (532)
T ss_pred CCCCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999 499999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 008163 561 TSKY 564 (575)
Q Consensus 561 i~~~ 564 (575)
|+++
T Consensus 526 I~~~ 529 (532)
T TIGR01810 526 IRGK 529 (532)
T ss_pred Hhcc
Confidence 9875
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-63 Score=529.38 Aligned_cols=481 Identities=26% Similarity=0.342 Sum_probs=349.7
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCCCCCcccchhhhhcc----CCCCCCCCCCcccCCCccccc
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFGAAL----SDLSSTSPSQRFISEDGVINS 118 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 118 (575)
+..+|||||||||.+|+++|.+|++ |++|+|||+|+....- ....+..+.... .+|.+.+.++.+..++.+.++
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~ 82 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGPDRRP-LIQMPAAYAFLMNGPRYDWGFRTEPEPHLRGRELAWP 82 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCCCCcc-ceecchhHhhhccCcccCCccccCcccCCCCcccccc
Confidence 4568999999999999999999999 9999999999753321 233344443333 257788888888888899999
Q ss_pred CcceecchhhcccceecCCChhhhhc-------CCCChhhhhhhhhhhhhhcccC--------C-----------CCchh
Q 008163 119 RARVLGGGSCLNAGFYTRAAPYYVRE-------VGWDERLVNESYQWVEKVVAFE--------P-----------PMRQW 172 (575)
Q Consensus 119 ~g~~lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~l~~~~~~~~~~~~~~--------~-----------~~~~~ 172 (575)
++++|||+|.+|++.++|+.+.+|+. .+|+|++++|||+++|+..... . ...+.
T Consensus 83 rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~~~~ 162 (542)
T COG2303 83 RGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPI 162 (542)
T ss_pred ccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCchHH
Confidence 99999999999999999999976643 4599999999999999754431 0 11234
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEECCCCccccHHH-hhh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeE
Q 008163 173 QSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAAD-LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVA 250 (575)
Q Consensus 173 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~-~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v 250 (575)
...+.++..++|++....+.-....++......+ .+|.|+++.. |++ +.++.|++|++++.|++|+++++ ++
T Consensus 163 ~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~-~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~~-----r~ 236 (542)
T COG2303 163 ARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTI-CNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGD-----RA 236 (542)
T ss_pred HHHHHHHHHHcCCCcCcccccCCCCCcccceeec-cCCeEeechhhcchhHhcCCceEEecCCEEEEEEEECC-----ee
Confidence 5666777778888754432221111222222222 3788887766 776 67889999999999999999998 99
Q ss_pred EEEEEEeCCCc-eeEEeeecCCCcEEEEccCCcCcHHHHHhhc--------CCCceeeecCCccCCCCCCCCCceEEeeC
Q 008163 251 HGVVFRDATGA-KHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPS 321 (575)
Q Consensus 251 ~GV~~~~~~g~-~~~v~~~~~aa~~VVlAaG~~~sp~lLl~Sg--------~~gi~~~~~~p~vG~~l~dh~~~~~~~~~ 321 (575)
+||++...++. ..... ++++||||||+++||+|||+|| +.++.++.++|.||+||+||..+.+.+..
T Consensus 237 ~gv~~~~~~~~~~~~~~----a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~~~~~~~ 312 (542)
T COG2303 237 VGVEVEIGDGGTIETAV----AAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIYVAFEA 312 (542)
T ss_pred EEEEEEeCCCCceEEEe----cCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhhhhheec
Confidence 99999864432 23333 6899999999999999999999 67899999999999999999999888876
Q ss_pred CCcccchhhHhhccccc--chhhhhccCCcccCCCCCCCCCCCcccccccccCCCCCCCCHHHHHHHHhhhccC--CCCC
Q 008163 322 PVPVEVSLIQVVGITQF--GSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKAL--DDPA 397 (575)
Q Consensus 322 ~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 397 (575)
+.+.............. ..|.....|..... .... + +....+....++. +.++....-. ....
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~--~~~~--g--------f~~~~~~~~~p~~-~~~~~~~~~~~~~~~~ 379 (542)
T COG2303 313 TEPTNDSVLSLFSKLGIGADRYLLTRDGPGATN--HFEG--G--------FVRSGPAGEYPDG-QYHFAPLPLAIRAAGA 379 (542)
T ss_pred cCccccccccccccccccceeEEeecCCCcccc--cccc--c--------ccccCccccCCCc-cccccccccccccccc
Confidence 65431111100111100 11222222321000 0000 1 1111111111111 1111110000 1112
Q ss_pred ccceeEEeeecccCcceEEEccCCCCCCCCeeecCCCCCHHHHHHHHHHHHHHHHHHhcccccccccccCcchhhhcccc
Q 008163 398 FRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTA 477 (575)
Q Consensus 398 ~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 477 (575)
...+++.....+|.|+|.|.+++.|+...|.|+++|+.++.|++.+..+++..++++.+..+..+...+
T Consensus 380 ~~~~~~~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e----------- 448 (542)
T COG2303 380 EHGFTLHVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAE----------- 448 (542)
T ss_pred CCccEEeeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHh-----------
Confidence 334567777899999999999999999999999999999999999999999999999976555544433
Q ss_pred CCCCcCCC-CCCCCHHHHHHHHHhcccccccccccccCC-----cccCCCCeEeccCCceeeeccCCCCCCCCchHHHHH
Q 008163 478 SAPVNLLP-RHSNASTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVM 551 (575)
Q Consensus 478 ~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG-----~VVD~~~rv~g~~nL~V~DaSv~P~~~~~NP~lTi~ 551 (575)
..| ...++++++..|++....+.+|++|||||| +|+|+++||||++||||+|+||||+++++||++||+
T Consensus 449 -----~~~~~~~~~~~~~~~~~~~~~~t~~H~~GT~rMG~Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ 523 (542)
T COG2303 449 -----LAPGPRVTTDEDISAAIRFLARTAYHPMGTCRMGSDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTII 523 (542)
T ss_pred -----hcCCCccccHHHHHHHHHhccCccccccccccCCCCchhhccccccccccCCCeEEeCcccCcCccCCCccHhHH
Confidence 334 245677899999999999999999999999 355599999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHH
Q 008163 552 MLGRYVNLTTSKY 564 (575)
Q Consensus 552 Ala~r~a~~i~~~ 564 (575)
|||+|+||+|+++
T Consensus 524 ala~raA~~I~~~ 536 (542)
T COG2303 524 ALAERAADHILGD 536 (542)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999999973
No 6
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=1.4e-48 Score=412.04 Aligned_cols=465 Identities=17% Similarity=0.156 Sum_probs=278.3
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCCCCC---------cc-cchhhhh----ccCCCC--------CCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPN---------IT-NLGSFGA----ALSDLS--------STS 104 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~~~~---------~~-~~~~~~~----~~~~~~--------~~~ 104 (575)
|||||||+|++|+++|+.|++ |+||+|||+|...+.... .. ....+.. .++..+ .+.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPTL 80 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCCC
Confidence 799999999999999999999 999999999986642110 00 0011111 111000 000
Q ss_pred CC-------Ccc-cC-C-----C---cc-cccCcceecchhhcccceecCCChhhhh--cCCCC--hhhhhhhhhhhhhh
Q 008163 105 PS-------QRF-IS-E-----D---GV-INSRARVLGGGSCLNAGFYTRAAPYYVR--EVGWD--ERLVNESYQWVEKV 162 (575)
Q Consensus 105 ~~-------~~~-~~-~-----~---~~-~~~~g~~lGG~s~~~~~~~~r~~~~~~~--~~gw~--~~~l~~~~~~~~~~ 162 (575)
.+ ..+ +. + + .+ ...+-+.+||+|.+|++.+.|.+++... ..+|+ ++++++||+++|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r~g~~~dWPI~y~eL~PyY~~Ae~~ 160 (544)
T TIGR02462 81 DPTAWSASIESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREERPKLSDDAAEDDAEWDRLYTKAESL 160 (544)
T ss_pred CccccccCCCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 00 011 00 0 0 11 1346789999999999999999985321 14676 69999999999999
Q ss_pred cccCCCCc--hh-HHHH-HHHHHHc-CC-CCCCCCCcCCCCcceeeeeEECCCCccccH-HHhhh-----hcCCCCeEEE
Q 008163 163 VAFEPPMR--QW-QSAV-RDGLVEV-GV-LPYNGFTYDHMYGTKIGGTIFDQNGQRHTA-ADLLE-----YANPSGLTLL 230 (575)
Q Consensus 163 ~~~~~~~~--~~-~~~~-~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~-~~~l~-----~~~~~g~~v~ 230 (575)
+++.+... +. .... ....+++ |. ..... . ..|... -| ..+.+++. .+.+. .++..|++|+
T Consensus 161 ~gv~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----P-lA~~~~--~c-~~~ak~s~~~t~~~~~~~~~~~~~n~~l~ 232 (544)
T TIGR02462 161 IGTSTDQFDESIRHNLVLRKLQDEYKGQRDFQPL----P-LACHRR--TD-PTYVEWHSADTVFDLQPNDDAPSERFTLL 232 (544)
T ss_pred hCCCCCcCCCcccchhHHHHHHHHhccccccccC----c-hhhhcc--CC-CccceecCCccchhhhhhhhccCCCEEEE
Confidence 88765311 11 1111 1122222 22 11000 0 001000 01 12233322 12222 2246789999
Q ss_pred cCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEeeecCCCcEEEEccCCcCcHHHHHhhcCC--Cce--eeec--CC
Q 008163 231 LHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAH--NIT--VVLD--QP 303 (575)
Q Consensus 231 ~~~~V~~l~~~~~~~~~~~v~GV~~~~~-~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~Sg~~--gi~--~~~~--~p 303 (575)
+++.|++|+++.++ ..+|++|++.+. +|+.++++ |+.||||||+++||||||+|+.. +.| +.+. ++
T Consensus 233 ~~a~v~~i~~d~~~--~~~v~~v~~~d~~~g~~~~v~-----A~~vVLAagaIetpRLLL~S~~~~~~~p~gl~Nss~~g 305 (544)
T TIGR02462 233 TNHRCTRLVRNETN--ESEIEAALVRDLLSGDRFEIK-----ADVYVLACGAVHNPQILVNSGFGQLGRPDPTNPPPLLP 305 (544)
T ss_pred cCCEEEEEEeCCCC--CceeEEEEEEECCCCcEEEEE-----CCEEEEccCchhhHHHHHhCCCCCCcCCCCcCCCCCCC
Confidence 99999999998641 128999999986 57777776 78999999999999999999832 232 4444 48
Q ss_pred ccCCCCCCCCCceEEeeCCCcccchhhHhhcccccchhhhhccCCc--ccCCCCCCCCCCCcccccccccCCCCCCCCHH
Q 008163 304 LVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGEN--FAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPE 381 (575)
Q Consensus 304 ~vG~~l~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (575)
.|||||+||+...+.+.++.+........... ...|..+..... +..+. ....+.....+ ...... .......
T Consensus 306 ~VGRnlmdh~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~-~~~~~~-~~~~w~~ 380 (544)
T TIGR02462 306 SLGRYITEQSMTFCQIVLSTELVDSVRSDPRG--LDWWKEKVANHMMKHPEDP-LPIPFRDPEPQ-VTTPFT-EEHPWHT 380 (544)
T ss_pred CCCcchhcCCCccEEEEecchhhhhccCCccc--cccccccchhhhccccCCc-ccccccccCcc-cccccc-cccccch
Confidence 99999999999888776665431111000000 000110000000 00000 00000000000 000000 0000000
Q ss_pred HH-HHHHh--hh-ccCCC-CCccceeEEeeecccCcceEEEccC--CCCCCCCeeecCCCCCHHHHHHHHHHHHHHHHHH
Q 008163 382 AI-AEAIE--NM-KALDD-PAFRGGFILEKVMGPVSTGHLELRT--RNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKII 454 (575)
Q Consensus 382 ~~-~~~~~--~~-~~~~~-~~~~~~~~~~~~~~p~s~g~v~l~~--~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~ 454 (575)
.+ +..+. .. ..... .......+.+.+ |..+++|+|++ +|.+|+|+++++|..++.|++.+..+.+.+.+++
T Consensus 381 ~~~~~~~~~g~~~~~~~~~~~v~l~~~~e~l--P~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~~~~~~i~ 458 (544)
T TIGR02462 381 QIHRDAFSYGAVGPSIDSRVIVDLRFFGRTE--PKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMMTDMCNVA 458 (544)
T ss_pred hhhhhhhhcccccccccccceeeEEEEeccC--CCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 00 00000 00 00000 112233445555 66688899975 5999999999999999999999999999999998
Q ss_pred hcccccccccccCcchhhhccccCCCCcCCCCCCCCHHHHHHHHHhcccccccccccccCC-----cccCCCCeEeccCC
Q 008163 455 ESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDA 529 (575)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~H~~Gt~~MG-----~VVD~~~rv~g~~n 529 (575)
+.++..... . .+ .| ......+|++|||||| +|||+++||||++|
T Consensus 459 ~~~G~~~~~--~-----------------~~----------~~--~~~~~~~H~~Gt~rMG~dp~~sVvd~~~rv~g~~N 507 (544)
T TIGR02462 459 AKIGGYLPG--S-----------------LP----------QF--MEPGLALHLAGTTRIGFDEQTTVANTDSKVHNFKN 507 (544)
T ss_pred HHcCCCccc--c-----------------cc----------cc--cCCCccccCCCCeecCCCCCCceECCCCcEeCCCC
Confidence 887632110 0 00 00 1123578999999999 79999999999999
Q ss_pred ceeeeccCCCCCCCCchHHHHHHHHHhhHHHHHHHH
Q 008163 530 LRVIDGSTFYYSPGTNPQATVMMLGRYVNLTTSKYV 565 (575)
Q Consensus 530 L~V~DaSv~P~~~~~NP~lTi~Ala~r~a~~i~~~~ 565 (575)
|||+|+|+||+.+++||++|+||||+|+|++|++++
T Consensus 508 L~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~~ 543 (544)
T TIGR02462 508 LYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINNF 543 (544)
T ss_pred eEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999875
No 7
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=8.2e-39 Score=322.13 Aligned_cols=256 Identities=34% Similarity=0.477 Sum_probs=175.5
Q ss_pred ccEEEECCCcchhHHHHhhcC-C-CeEEEEeccCCCCCCCCcccchhhhhcc---CCCCCCCCCCcccCCCcccccCcce
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPYGNPNITNLGSFGAAL---SDLSSTSPSQRFISEDGVINSRARV 122 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~ 122 (575)
|||||||||++|+++|.+|++ + .||||||+|+...... ......+...+ .++.+...++....++...+++|++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 79 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED-STPPSSFYQDFDSEYDWGYYSGPQPFLNGRTINWPRGKG 79 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG-HHGGGGGGGCTTTTTBBGEEECEEECTTTTSEEEEEB-S
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc-chhhhccccccCcccccccccccccccccceeeeeccee
Confidence 899999999999999999999 6 7999999999865433 11111111111 1233444455556677788889999
Q ss_pred ecchhhcccceecCCChhhhhc-------CCCChhhhhhhhhhhhhh-------------ccc---CCCCchhHHHHHHH
Q 008163 123 LGGGSCLNAGFYTRAAPYYVRE-------VGWDERLVNESYQWVEKV-------------VAF---EPPMRQWQSAVRDG 179 (575)
Q Consensus 123 lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~l~~~~~~~~~~-------------~~~---~~~~~~~~~~~~~~ 179 (575)
|||+|.+|++.+.|+++.+++. .+|+|+++.++|+++|.. +.+ .+...+....+.++
T Consensus 80 lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~a 159 (296)
T PF00732_consen 80 LGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPSSDLHGVDGPLPVSSSPPYPSPMNQALMDA 159 (296)
T ss_dssp TTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTBGGGSCBSSSEEEHHHCSCHCTHHHHHHHH
T ss_pred cCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccccccccccccccccccccCCCCHHHHHHHHH
Confidence 9999999999999999865442 358899999999999933 222 12234456778889
Q ss_pred HHHcCCCCCCCCCcCCCCcceeeeeE-ECCCCccccHHH-hhh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEE
Q 008163 180 LVEVGVLPYNGFTYDHMYGTKIGGTI-FDQNGQRHTAAD-LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFR 256 (575)
Q Consensus 180 ~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~g~r~~~~~-~l~-~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~ 256 (575)
+.+.|++........ ..+..+... .+.+|.|+++.. ||+ +.++.|++|+++++|++|+++.++ .+++||++.
T Consensus 160 ~~~~G~~~~~~~~~~--~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~---~~a~gV~~~ 234 (296)
T PF00732_consen 160 AEELGIPVPQDFNGC--DPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDG---GRATGVEYV 234 (296)
T ss_dssp HHHTTHHBCSCTTSS--TCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTS---TEEEEEEEE
T ss_pred HHHcCCccccccccc--cccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccc---cceeeeeee
Confidence 999998722221111 122221111 236788877655 776 555669999999999999996322 399999999
Q ss_pred eCCCc-eeEEeeecCCCcEEEEccCCcCcHHHHHhhc--------CCCceeeecCCccCCCCCCCCC
Q 008163 257 DATGA-KHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPM 314 (575)
Q Consensus 257 ~~~g~-~~~v~~~~~aa~~VVlAaG~~~sp~lLl~Sg--------~~gi~~~~~~p~vG~~l~dh~~ 314 (575)
+.++. .+.+. ++|+||||||+++||+|||+|| ++||+++.++| ||+||+|||.
T Consensus 235 ~~~~~~~~~~~----~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lp-VG~nl~dH~~ 296 (296)
T PF00732_consen 235 DNDGGVQRRIV----AAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLP-VGRNLQDHPV 296 (296)
T ss_dssp ETTTSEEEEEE----EEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-T-TTECEB--EE
T ss_pred ecCCcceeeec----cceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCc-chhchhcccC
Confidence 87766 23333 5899999999999999999999 78999999999 9999999973
No 8
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=99.98 E-value=1.1e-32 Score=246.53 Aligned_cols=139 Identities=34% Similarity=0.565 Sum_probs=110.3
Q ss_pred cCcceEEEccCCCCCCCCeeecCCCCCHHHHHHHHHHHHHHHHHHhcccccccccccCcchhhhccccCCCCcCCCCCCC
Q 008163 410 PVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSN 489 (575)
Q Consensus 410 p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 489 (575)
|.|+|+|+|+++|+++.|.|+++|+.++.|++.+.++++.++++++.. +.++...+..+... + ........
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~-------~-~~~~~~~~ 71 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPS-------P-FCPDASLD 71 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGC-------S-CCGCSTTT
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hccccccccccccc-------c-cccccccc
Confidence 789999999999999999999999999999999999999999999998 65554322100000 0 00112446
Q ss_pred CHHHHHHHHHhcccccccccccccCC-----cccCCCCeEeccCCceeeeccCCCCCCCCchHHHHHHHHHhh
Q 008163 490 ASTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYV 557 (575)
Q Consensus 490 ~~~~~~~~~~~~~~~~~H~~Gt~~MG-----~VVD~~~rv~g~~nL~V~DaSv~P~~~~~NP~lTi~Ala~r~ 557 (575)
++++|++|++....+.+|++|||||| +|||++|||||++||||+|+||||+.+++||++|+||||+|+
T Consensus 72 ~~~~~~~~~~~~~~~~~H~~Gt~~mG~~~~~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 72 SDEDLECYIRQNVGTSWHPSGTCRMGPDPDTSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp CHHHHHHHHHHHGEECSS-BETT-BTSSTTTTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred cchhhhhheeeccceecccccceeccccCCceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 77899999999999999999999999 899999999999999999999999999999999999999996
No 9
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.63 E-value=9.2e-15 Score=157.38 Aligned_cols=191 Identities=17% Similarity=0.178 Sum_probs=105.1
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCCCCCcccchhhhhccCCCCCCCCCCcccCCCcccccCcce
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARV 122 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 122 (575)
++.++||||||+|.+|+++|+++++ |.+|+||||.+...
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~G---------------------------------------- 97 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAG---------------------------------------- 97 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC----------------------------------------
Confidence 4568999999999999999999999 99999999997543
Q ss_pred ecchhhcccceecCCChhhhhcCCCChhhhhhhhhhhhhhcccCCCCc---hh---HHHHHHHHHHcCCCCCCCCCcCCC
Q 008163 123 LGGGSCLNAGFYTRAAPYYVREVGWDERLVNESYQWVEKVVAFEPPMR---QW---QSAVRDGLVEVGVLPYNGFTYDHM 196 (575)
Q Consensus 123 lGG~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~g~~~~~~~~~~~~ 196 (575)
|.+....+.+.-....+....+.. +..+.++++..+......... .+ .....+++.+.|++.... .. .
T Consensus 98 --G~s~~s~Gg~~~~~~~~~~~~g~~-d~~~~~~~~~~~~~~~~~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~-~~--~ 171 (506)
T PRK06481 98 --GNTMKASSGMNASETKFQKAQGIA-DSNDKFYEETLKGGGGTNDKALLRYFVDNSASAIDWLDSMGIKLDNL-TI--T 171 (506)
T ss_pred --CcccccCCccccCChHHHHhcCCC-CCHHHHHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHHcCceEeec-cc--C
Confidence 222222211111111111111111 112223332221111000000 00 123456777777652110 00 0
Q ss_pred CcceeeeeEECCCCcccc---HHHhhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCc
Q 008163 197 YGTKIGGTIFDQNGQRHT---AADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKN 273 (575)
Q Consensus 197 ~~~~~~~~~~~~~g~r~~---~~~~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~ 273 (575)
.+......+.+.++.... ...+...+++.|++++++++|++|+.+++ +++||.+...+++..++. ++
T Consensus 172 ~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g-----~V~Gv~~~~~~g~~~~i~-----a~ 241 (506)
T PRK06481 172 GGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEKDG-----KVTGVKVKINGKETKTIS-----SK 241 (506)
T ss_pred CCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecCC-----EEEEEEEEeCCCeEEEEe-----cC
Confidence 111111111122222111 12245566678999999999999987665 899999876455555564 79
Q ss_pred EEEEccCCcCcHHHHHh
Q 008163 274 EIIVSAGALGSPQLLML 290 (575)
Q Consensus 274 ~VVlAaG~~~sp~lLl~ 290 (575)
.||||+|+|..+.-++.
T Consensus 242 ~VVlAtGG~~~n~~m~~ 258 (506)
T PRK06481 242 AVVVTTGGFGANKDMIA 258 (506)
T ss_pred eEEEeCCCcccCHHHHH
Confidence 99999999987654443
No 10
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.58 E-value=4.2e-14 Score=153.30 Aligned_cols=62 Identities=13% Similarity=0.196 Sum_probs=49.0
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHH
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 289 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl 289 (575)
+...+++.|++|+++++|++|+.+++ +|+||.+.. +|+.+.++ ++|.||||+|+|+...-|+
T Consensus 223 L~~~~~~~Gv~i~~~t~v~~Li~~~g-----~V~GV~~~~-~g~~~~i~----a~kaVILAtGGf~~n~em~ 284 (564)
T PRK12845 223 LFAGVLRAGIPIWTETSLVRLTDDGG-----RVTGAVVDH-RGREVTVT----ARRGVVLAAGGFDHDMEMR 284 (564)
T ss_pred HHHHHHHCCCEEEecCEeeEEEecCC-----EEEEEEEEE-CCcEEEEE----cCCEEEEecCCccccHHHH
Confidence 44456678999999999999997654 999998875 56555666 6789999999999775443
No 11
>PRK07121 hypothetical protein; Validated
Probab=99.54 E-value=1.6e-13 Score=147.89 Aligned_cols=65 Identities=15% Similarity=0.268 Sum_probs=50.5
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHhh
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 291 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~S 291 (575)
+...+++.|++|+++++|++|+.++++ +++||++.+ +++.++++ +++.||||+|++....-|++-
T Consensus 183 L~~~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~-~~~~~~i~----a~k~VVlAtGg~~~N~em~~~ 247 (492)
T PRK07121 183 LAKRAAALGVQIRYDTRATRLIVDDDG----RVVGVEARR-YGETVAIR----ARKGVVLAAGGFAMNREMVAR 247 (492)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEECCCC----CEEEEEEEe-CCcEEEEE----eCCEEEECCCCcCcCHHHHHH
Confidence 445677789999999999999987544 899999874 55556665 449999999999876555543
No 12
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.53 E-value=1.1e-13 Score=151.15 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=48.9
Q ss_pred hhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHH
Q 008163 220 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 289 (575)
Q Consensus 220 ~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl 289 (575)
..+++.|++|+++++|++|+.++++ +|+||.+.. +++.++++ +++.||||||+|+...-|+
T Consensus 221 ~~~~~~gv~i~~~~~~~~Li~d~~g----~V~Gv~~~~-~~~~~~i~----a~~aVilAtGGf~~N~em~ 281 (584)
T PRK12835 221 LALKDAGVPLWLDSPMTELITDPDG----AVVGAVVER-EGRTLRIG----ARRGVILATGGFDHDMDWR 281 (584)
T ss_pred HHHHhCCceEEeCCEEEEEEECCCC----cEEEEEEEe-CCcEEEEE----eceeEEEecCcccCCHHHH
Confidence 3567789999999999999997554 899999874 67666676 5568999999999755444
No 13
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.53 E-value=1.1e-13 Score=150.36 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=50.7
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHh
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 290 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~ 290 (575)
+...+++.|++|+++++|++|+.+++ +|+||++.. +|+.++++ +++.||||||+|....=|+.
T Consensus 214 l~~~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~~aVIlAtGG~~~N~em~~ 276 (557)
T PRK12844 214 MLEAALAAGVPLWTNTPLTELIVEDG-----RVVGVVVVR-DGREVLIR----ARRGVLLASGGFGHNAEMRK 276 (557)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeCC-----EEEEEEEEE-CCeEEEEE----ecceEEEecCCccCCHHHHH
Confidence 34466778999999999999999865 999999875 66666676 55789999999998755544
No 14
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.52 E-value=1.3e-13 Score=147.77 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=51.7
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHhh
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 291 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~S 291 (575)
+...+++.|++++++++|++|+.+++ +++||.+.+.+++...+. ++.||||+|++.+++.++..
T Consensus 137 l~~~~~~~gv~i~~~t~v~~l~~~~g-----~v~gv~~~~~~g~~~~i~-----a~~VIlAtGg~~~n~~~~~~ 200 (466)
T PRK08274 137 LYRSAERLGVEIRYDAPVTALELDDG-----RFVGARAGSAAGGAERIR-----AKAVVLAAGGFESNREWLRE 200 (466)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEecCC-----eEEEEEEEccCCceEEEE-----CCEEEECCCCCCCCHHHHHh
Confidence 45566778999999999999998765 899998864456555665 69999999999998777664
No 15
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.51 E-value=9.7e-14 Score=146.73 Aligned_cols=188 Identities=26% Similarity=0.305 Sum_probs=98.8
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCCCCCcccchhhhhccCCCCCCCCCCcccCCCcccccCcceecchh
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGS 127 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG~s 127 (575)
||||||+|.+|+++|++|++ |.+|+||||++. .||++
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~------------------------------------------~gg~~ 38 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR------------------------------------------LGGSS 38 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG------------------------------------------GGSGG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc------------------------------------------ccccc
Confidence 89999999999999999999 999999999964 34444
Q ss_pred hcccceecCCChhhhhcCCCChhhhhhhhhhhhhhcccCCCCc------hhHHHHHHHHHHcCCCCCC----CCCcCCCC
Q 008163 128 CLNAGFYTRAAPYYVREVGWDERLVNESYQWVEKVVAFEPPMR------QWQSAVRDGLVEVGVLPYN----GFTYDHMY 197 (575)
Q Consensus 128 ~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~----~~~~~~~~ 197 (575)
...++.+.-......+..+- .+..+.++++..+......... .-.....+++.+.|++... .+......
T Consensus 39 ~~s~g~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g 117 (417)
T PF00890_consen 39 AFSSGGFDAAGTPPQREAGI-EDSPEEFFQDIMAAGGGLNDPDLVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFG 117 (417)
T ss_dssp GGTCSEEEESSSHSSHHTTT-TCHHHHHHHHHHHHTTT-S-HHHHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEET
T ss_pred ccccCceeeecccccccccc-cccccccceeeecccccccccchhhhhhhcccceehhhhhhcccccccccccccccccC
Confidence 44333332222111000110 0122333333322221111110 1123456677777765322 00000011
Q ss_pred cceee-eeEE-CCCC------ccccH-HHhhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEee
Q 008163 198 GTKIG-GTIF-DQNG------QRHTA-ADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYL 267 (575)
Q Consensus 198 ~~~~~-~~~~-~~~g------~r~~~-~~~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~-~~g~~~~v~~ 267 (575)
..... .... ..+. ..... ..+...+++.|++|+++++|++|+++++ +|+||++.+ .+|+.++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g-----~V~Gv~~~~~~~g~~~~i~- 191 (417)
T PF00890_consen 118 GHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIRFNTRVTDLITEDG-----RVTGVVAENPADGEFVRIK- 191 (417)
T ss_dssp TESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT-----EEEEEEEEETTTCEEEEEE-
T ss_pred CccccceeeeccccccccccccHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCC-----ceeEEEEEECCCCeEEEEe-
Confidence 11111 1111 1111 00111 1144466778899999999999999877 999999994 367777776
Q ss_pred ecCCCcEEEEccCCcCcHHHHHh
Q 008163 268 KNGPKNEIIVSAGALGSPQLLML 290 (575)
Q Consensus 268 ~~~aa~~VVlAaG~~~sp~lLl~ 290 (575)
++.||||+|+++. .++..
T Consensus 192 ----A~aVIlAtGG~~~-~~~~~ 209 (417)
T PF00890_consen 192 ----AKAVILATGGFGG-ELLRQ 209 (417)
T ss_dssp ----ESEEEE----BGG-HHHHH
T ss_pred ----eeEEEeccCcccc-ccccc
Confidence 6799999999999 44433
No 16
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.50 E-value=5.4e-13 Score=143.98 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=48.4
Q ss_pred hhhh-cCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHh
Q 008163 218 LLEY-ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 290 (575)
Q Consensus 218 ~l~~-~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~ 290 (575)
++.. .++.|++|+++++|++|+.+++ +|+||++.. +|+.++++ +++.||||||+++...-|+.
T Consensus 179 l~~~~~~~~gv~i~~~t~~~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~k~VIlAtGG~~~n~~m~~ 242 (513)
T PRK12837 179 FLAALARFPNARLRLNTPLVELVVEDG-----RVVGAVVER-GGERRRVR----ARRGVLLAAGGFEQNDDMRA 242 (513)
T ss_pred HHHHHHhCCCCEEEeCCEEEEEEecCC-----EEEEEEEEE-CCcEEEEE----eCceEEEeCCCccCCHHHHH
Confidence 4443 3446999999999999998865 999999874 67666776 55789999999976654443
No 17
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.50 E-value=3.4e-13 Score=133.70 Aligned_cols=168 Identities=21% Similarity=0.308 Sum_probs=104.6
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCCCCCcccchhhhhccCCCCCCCCCCcccCCCcccccCcceec
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLG 124 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lG 124 (575)
+.+||||||+|++|+++|..+++ |.+|+|+|+++..+.+- .+-|
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKi-----------------------------------l~sG 46 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKI-----------------------------------LMSG 46 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCcccccee-----------------------------------EecC
Confidence 47999999999999999999999 99999999998765321 1223
Q ss_pred chhhcccceecCCChhhhhcCCCChhhhhhhhhhhhhhcccCCCCchhHHHHHHHHHHcCCCCCCCCCcCCCCcceeeee
Q 008163 125 GGSCLNAGFYTRAAPYYVREVGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGT 204 (575)
Q Consensus 125 G~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 204 (575)
|+.+ |...... ..++..+..-....+...+.+. -.+.++.+++..|+..+. ...+.
T Consensus 47 gGrC-N~Tn~~~-~~~~ls~~p~~~~fl~sal~~f------------t~~d~i~~~e~~Gi~~~e----------~~~Gr 102 (408)
T COG2081 47 GGRC-NFTNSEA-PDEFLSRNPGNGHFLKSALARF------------TPEDFIDWVEGLGIALKE----------EDLGR 102 (408)
T ss_pred CCCc-ccccccc-HHHHHHhCCCcchHHHHHHHhC------------CHHHHHHHHHhcCCeeEE----------ccCce
Confidence 3332 2111110 1111111000001111111111 135678888888876321 11123
Q ss_pred EECCCCccccHHH-hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcC
Q 008163 205 IFDQNGQRHTAAD-LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 283 (575)
Q Consensus 205 ~~~~~g~r~~~~~-~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~ 283 (575)
+||...+..+... ++..+++.|++|+++++|..|..++. +..+..++|+ +++ ++.+|||+|+..
T Consensus 103 ~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~--------~f~l~t~~g~--~i~-----~d~lilAtGG~S 167 (408)
T COG2081 103 MFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS--------GFRLDTSSGE--TVK-----CDSLILATGGKS 167 (408)
T ss_pred ecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc--------eEEEEcCCCC--EEE-----ccEEEEecCCcC
Confidence 4454344343333 67788889999999999999988775 5556655775 444 899999999988
Q ss_pred cHHH
Q 008163 284 SPQL 287 (575)
Q Consensus 284 sp~l 287 (575)
.|++
T Consensus 168 ~P~l 171 (408)
T COG2081 168 WPKL 171 (408)
T ss_pred CCCC
Confidence 8853
No 18
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.48 E-value=7.7e-13 Score=144.09 Aligned_cols=35 Identities=37% Similarity=0.516 Sum_probs=33.1
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
..++||||||+|.+|+++|..+++ |.+|+||||++
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 357999999999999999999999 99999999997
No 19
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.47 E-value=6.9e-13 Score=139.95 Aligned_cols=177 Identities=16% Similarity=0.239 Sum_probs=97.0
Q ss_pred CcccEEEECCCcchhHHHHhhcCCCeEEEEeccCCCCCCCCcccchhhhhccCCCCCCCCCCcccCCCcccccCcceecc
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGG 125 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~G~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG 125 (575)
.++||||||+|.+|+++|..+++|.+|+||||+....++
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~~G~~V~lleK~~~~gg~----------------------------------------- 41 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLRKDLKILMVSKGKLNECN----------------------------------------- 41 (433)
T ss_pred ccccEEEECchHHHHHHHHHhccCCCEEEEecCCCCCCc-----------------------------------------
Confidence 579999999999999999998559999999999754321
Q ss_pred hhhcccceecCCChhhhhcCCCChhhhhhhhhhhhhhcccCCCC---chh---HHHHHHHHHHcCCCCCCCC---CcCCC
Q 008163 126 GSCLNAGFYTRAAPYYVREVGWDERLVNESYQWVEKVVAFEPPM---RQW---QSAVRDGLVEVGVLPYNGF---TYDHM 196 (575)
Q Consensus 126 ~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~g~~~~~~~---~~~~~ 196 (575)
|.+..+...... +.++.+.++++..+........ ..+ .....+++.+.|++..... .+...
T Consensus 42 -s~~a~ggi~~~~---------~~d~~~~~~~d~~~~g~~~~d~~lv~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~ 111 (433)
T PRK06175 42 -TYLAQGGISVAR---------NKDDITSFVEDTLKAGQYENNLEAVKILANESIENINKLIDMGLNFDKDEKELSYTKE 111 (433)
T ss_pred -hHHHhHhheeCC---------CCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCCCceeeecc
Confidence 111111000000 0112223333322211111110 111 2335567777786532110 01001
Q ss_pred CcceeeeeEECCCCc-cccHHHhhhhc-CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcE
Q 008163 197 YGTKIGGTIFDQNGQ-RHTAADLLEYA-NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNE 274 (575)
Q Consensus 197 ~~~~~~~~~~~~~g~-r~~~~~~l~~~-~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~ 274 (575)
.+......+++.+.. +.....++..+ ++.|++|++++.|++|+.+++ +++||.+.+ +++.+++. ++.
T Consensus 112 g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~-----~v~Gv~~~~-~g~~~~i~-----Ak~ 180 (433)
T PRK06175 112 GAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDN-----TCIGAICLK-DNKQINIY-----SKV 180 (433)
T ss_pred CccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCC-----EEEEEEEEE-CCcEEEEE-----cCe
Confidence 111111111122211 11112245444 456999999999999998765 899988764 45555565 699
Q ss_pred EEEccCCcCc
Q 008163 275 IIVSAGALGS 284 (575)
Q Consensus 275 VVlAaG~~~s 284 (575)
||||+|+++.
T Consensus 181 VILAtGG~~~ 190 (433)
T PRK06175 181 TILATGGIGG 190 (433)
T ss_pred EEEccCcccc
Confidence 9999999764
No 20
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.44 E-value=1.2e-13 Score=142.99 Aligned_cols=184 Identities=23% Similarity=0.344 Sum_probs=90.1
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCCCCCcccchhhhhccCCCCCCCCCCcccCCCcccccCcceecch
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGG 126 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG~ 126 (575)
|||||||+|++|+++|+.|++ |++|+||||+...+.+- ...|++
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKi-----------------------------------l~tG~G 45 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKI-----------------------------------LITGNG 45 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHH-----------------------------------HHCGGG
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccce-----------------------------------eecCCC
Confidence 899999999999999999999 99999999997654210 112222
Q ss_pred hhcccceecCCChhhhhcCCCChhhhhhhhhhhhhhcccCCCCchhHHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEE
Q 008163 127 SCLNAGFYTRAAPYYVREVGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIF 206 (575)
Q Consensus 127 s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (575)
.+ |-........++....+-..+.+.+.+++. -...+.+.+.+.|++.. ....+.++
T Consensus 46 rC-N~tn~~~~~~~~~~~~~~~~~f~~~~l~~f------------~~~d~~~ff~~~Gv~~~----------~~~~gr~f 102 (409)
T PF03486_consen 46 RC-NLTNLNIDPSEFLSGYGRNPKFLKSALKRF------------SPEDLIAFFEELGVPTK----------IEEDGRVF 102 (409)
T ss_dssp T--EEEETTSSGGGEECS-TBTTTCTHHHHHHS-------------HHHHHHHHHHTT--EE----------E-STTEEE
T ss_pred Cc-cccccccchhhHhhhcccchHHHHHHHhcC------------CHHHHHHHHHhcCCeEE----------EcCCCEEC
Confidence 21 111100000111100000111111111111 12456778888887521 11112344
Q ss_pred CCCCccccHHH-hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcH
Q 008163 207 DQNGQRHTAAD-LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP 285 (575)
Q Consensus 207 ~~~g~r~~~~~-~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp 285 (575)
|...+..+... ++..+++.|++|+++++|++|..+++ .+..|.+. +++ ++. ++.||||+|+...|
T Consensus 103 P~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-----~~f~v~~~--~~~--~~~-----a~~vILAtGG~S~p 168 (409)
T PF03486_consen 103 PKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-----GVFGVKTK--NGG--EYE-----ADAVILATGGKSYP 168 (409)
T ss_dssp ETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-----EEEEEEET--TTE--EEE-----ESEEEE----SSSG
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-----ceeEeecc--Ccc--ccc-----CCEEEEecCCCCcc
Confidence 54444444433 55677788999999999999999887 66777662 333 333 79999999998877
Q ss_pred HH------HHhhcCCCceeeecCC
Q 008163 286 QL------LMLSGAHNITVVLDQP 303 (575)
Q Consensus 286 ~l------Ll~Sg~~gi~~~~~~p 303 (575)
++ +....++|+++....|
T Consensus 169 ~~GS~G~gy~~a~~lGh~i~~~~P 192 (409)
T PF03486_consen 169 KTGSDGSGYRIAKKLGHTITPPYP 192 (409)
T ss_dssp GGT-SSHHHHHHHHTT--EEEEEE
T ss_pred ccCCCcHHHHHHHHCCCcEecCCC
Confidence 63 3333366676655555
No 21
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.42 E-value=1.3e-12 Score=139.01 Aligned_cols=63 Identities=19% Similarity=0.346 Sum_probs=48.4
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHH
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 289 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl 289 (575)
+...+++.|++++++++|++|+.++++ +++||++.+.+++.+.+ +++.||||+|++....-|+
T Consensus 136 l~~~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~~~g~~~~~-----~a~~VVlAtGg~~~n~~m~ 198 (439)
T TIGR01813 136 LYKKAKKEGIDTRLNSKVEDLIQDDQG----TVVGVVVKGKGKGIYIK-----AAKAVVLATGGFGSNKEMI 198 (439)
T ss_pred HHHHHHHcCCEEEeCCEeeEeEECCCC----cEEEEEEEeCCCeEEEE-----ecceEEEecCCCCCCHHHH
Confidence 445667789999999999999997553 89999998655543344 4799999999988754443
No 22
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.42 E-value=3.1e-12 Score=139.43 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=45.0
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEeeecCCCcEEEEccCCcC
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG 283 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~-~g~~~~v~~~~~aa~~VVlAaG~~~ 283 (575)
+...+.+.|+++++++.+++|+.+++ +|+||.+.+. +|+.+.+. ++.||||||+++
T Consensus 142 L~~~~~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~ 198 (566)
T PRK06452 142 LFERTSGLNVDFYNEWFSLDLVTDNK-----KVVGIVAMQMKTLTPFFFK-----TKAVVLATGGMG 198 (566)
T ss_pred HHHHHHhCCCEEEeCcEEEEEEEECC-----EEEEEEEEECCCCeEEEEE-----eCeEEECCCccc
Confidence 44455567999999999999999865 9999998864 44455554 799999999997
No 23
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.42 E-value=4.1e-12 Score=138.31 Aligned_cols=64 Identities=14% Similarity=0.237 Sum_probs=51.0
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHhh
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 291 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~S 291 (575)
+...+++.|++|+++++|++|+.+++ +|+||.+.. +++.+++. +++.||||+|+|.+.+-|+..
T Consensus 214 L~~~~~~~gv~v~~~t~v~~l~~~~g-----~v~Gv~~~~-~g~~~~i~----A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 214 LRIGLQRAGVPVLLNTPLTDLYVEDG-----RVTGVHAAE-SGEPQLIR----ARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred HHHHHHcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEe-CCcEEEEE----eceeEEEccCCcCcCHHHHHH
Confidence 33456678999999999999998765 999999874 56666666 456899999999997766654
No 24
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.41 E-value=3.4e-12 Score=138.90 Aligned_cols=58 Identities=22% Similarity=0.387 Sum_probs=46.6
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEeeecCCCcEEEEccCCcCc
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~-~~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
+...+++.|+++++++.|++|+.++++ +++||.+.+ .+|+.+.+. ++.||||+|+++.
T Consensus 140 L~~~~~~~gv~i~~~t~v~~Li~~~~~----~v~Gv~~~~~~~g~~~~i~-----AkaVIlATGG~~~ 198 (543)
T PRK06263 140 LMEYLIKERIKILEEVMAIKLIVDENR----EVIGAIFLDLRNGEIFPIY-----AKATILATGGAGQ 198 (543)
T ss_pred HHHHHhcCCCEEEeCeEeeeeEEeCCc----EEEEEEEEECCCCcEEEEE-----cCcEEECCCCCCC
Confidence 444566689999999999999988763 699998876 567666665 7999999999874
No 25
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.41 E-value=3.3e-12 Score=139.62 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=46.4
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEeeecCCCcEEEEccCCcCc
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~-~~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
+...+.+.|+++++++.|++|+.++++ +|+||.+.+ .+|+.+.+. ++.||||||+++.
T Consensus 149 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 207 (588)
T PRK08958 149 LYQQNLKNHTTIFSEWYALDLVKNQDG----AVVGCTAICIETGEVVYFK-----ARATVLATGGAGR 207 (588)
T ss_pred HHHHhhhcCCEEEeCcEEEEEEECCCC----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCCccc
Confidence 445566789999999999999986443 999999864 356666665 7999999999875
No 26
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.41 E-value=2.7e-12 Score=140.97 Aligned_cols=59 Identities=19% Similarity=0.320 Sum_probs=46.7
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEeeecCCCcEEEEccCCcCcH
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSP 285 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~-~g~~~~v~~~~~aa~~VVlAaG~~~sp 285 (575)
+...+.+.|++|++++.+++|+.++++ +|+||.+.+. +|+.+.+. +|.||||||+++..
T Consensus 193 L~~~a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~~ 252 (635)
T PLN00128 193 LYGQAMKHNTQFFVEYFALDLIMDSDG----ACQGVIALNMEDGTLHRFR-----AHSTILATGGYGRA 252 (635)
T ss_pred HHHHHHhCCCEEEEeeEEEEEEEcCCC----EEEEEEEEEcCCCeEEEEE-----cCeEEECCCCCccc
Confidence 444556679999999999999987443 9999998753 57666665 79999999999863
No 27
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.41 E-value=4.9e-12 Score=138.31 Aligned_cols=63 Identities=16% Similarity=0.251 Sum_probs=50.0
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHh
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 290 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~ 290 (575)
++..+++.|+++++++.|++|+.+++ +|+||.+.. +|+.+++. +++.||||+|+++...=|++
T Consensus 227 L~~~~~~~Gv~i~~~t~v~~Li~~~g-----~V~GV~~~~-~g~~~~i~----A~~~VVlAtGg~~~n~em~~ 289 (578)
T PRK12843 227 LLYSLRARGVRILTQTDVESLETDHG-----RVIGATVVQ-GGVRRRIR----ARGGVVLATGGFNRHPQLRR 289 (578)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEec-CCeEEEEE----ccceEEECCCCcccCHHHHH
Confidence 45566778999999999999998765 999998874 56555665 56899999999998754443
No 28
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.40 E-value=3.2e-12 Score=140.29 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=45.8
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEeeecCCCcEEEEccCCcCc
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~-~~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
+...+++.|+++++++.|++|+.++++ +|+||.+.+ .+|+.+.+. ++.||||||+++.
T Consensus 172 L~~~a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 230 (617)
T PTZ00139 172 LYGQSLKYDCNFFIEYFALDLIMDEDG----ECRGVIAMSMEDGSIHRFR-----AHYTVIATGGYGR 230 (617)
T ss_pred HHHHHHhCCCEEEeceEEEEEEECCCC----EEEEEEEEECCCCeEEEEE-----CCcEEEeCCCCcc
Confidence 444566789999999999999984333 999998865 356666664 7999999999875
No 29
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.40 E-value=4.7e-12 Score=139.49 Aligned_cols=54 Identities=17% Similarity=0.320 Sum_probs=44.9
Q ss_pred hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEeeecCCCcEEEEccCCcCc
Q 008163 221 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 221 ~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~-~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
.+++.|++|++++.|++|+.+++ +|+||.+.+. +|..+.+. ++.||||||+++.
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~d~g-----~V~GV~~~~~~~g~~~~i~-----AkaVVLATGG~g~ 233 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVVVDG-----RARGIVARNLVTGEIERHT-----ADAVVLATGGYGN 233 (640)
T ss_pred HHHhcCCEEEeceEEEEEEEeCC-----EEEEEEEEECCCCcEEEEE-----CCEEEECCCCccc
Confidence 55678999999999999998765 9999999864 56555554 7999999999886
No 30
>PLN02815 L-aspartate oxidase
Probab=99.39 E-value=3.7e-12 Score=138.63 Aligned_cols=61 Identities=28% Similarity=0.369 Sum_probs=44.2
Q ss_pred hhhhc-CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEeeecCCCcEEEEccCCcCc
Q 008163 218 LLEYA-NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 218 ~l~~~-~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~-~~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
+...+ +..|++|++++.+++|+.++++ +..+|+||.+.+ .+|+.+.+. +|.||||||+++.
T Consensus 161 L~~~~~~~~~i~i~~~~~~~~Li~~~~g-~~~~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~ 223 (594)
T PLN02815 161 LLEAVKNDPNITFFEHHFAIDLLTSQDG-GSIVCHGADVLDTRTGEVVRFI-----SKVTLLASGGAGH 223 (594)
T ss_pred HHHHHHhcCCCEEEeceEhheeeeecCC-CccEEEEEEEEEcCCCeEEEEE-----eceEEEcCCccee
Confidence 44444 3459999999999999986532 011489998864 356655664 7999999999874
No 31
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.39 E-value=4.4e-12 Score=139.03 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=46.7
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEeeecCCCcEEEEccCCcCc
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~-~~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
+...+++.|+++++++.|++|+.++++ +|+||.+.+ .+|+.+.+. ++.||||||+++.
T Consensus 155 L~~~~~~~gi~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 213 (598)
T PRK09078 155 LYQQSLKHNAEFFIEYFALDLIMDDGG----VCRGVVAWNLDDGTLHRFR-----AHMVVLATGGYGR 213 (598)
T ss_pred HHHHHhhcCCEEEEeEEEEEEEEcCCC----EEEEEEEEECCCCcEEEEE-----cCEEEECCCCCcc
Confidence 445566689999999999999997643 999998864 366666665 7999999999986
No 32
>PRK12839 hypothetical protein; Provisional
Probab=99.39 E-value=7.6e-12 Score=136.17 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=49.1
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHH
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 289 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl 289 (575)
++..+++.|++|++++.|++|+.++++ +|+||.+.+.+|+ .++. +++.||||||+|+...-++
T Consensus 220 L~~~a~~~Gv~i~~~t~v~~Li~~~~g----~V~GV~~~~~~g~-~~i~----aak~VVLAtGGf~~n~~~~ 282 (572)
T PRK12839 220 LLRSADDLGVDLRVSTSATSLTTDKNG----RVTGVRVQGPDGA-VTVE----ATRGVVLATGGFPNDVDRR 282 (572)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEECCCC----cEEEEEEEeCCCc-EEEE----eCCEEEEcCCCcccCHHHH
Confidence 445667789999999999999987543 9999998865554 4444 5799999999999855443
No 33
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.39 E-value=3.4e-12 Score=138.37 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=43.6
Q ss_pred hhhhc-CCCCeEEEcCcEEEEEEEec-CCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCc
Q 008163 218 LLEYA-NPSGLTLLLHASVHKVLFRI-KGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 218 ~l~~~-~~~g~~v~~~~~V~~l~~~~-~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
+...+ ++.|++|++++.|++|+.++ ++ +|+||.+.+ +|..+.+. ++.||||||+++.
T Consensus 140 L~~~~~~~~gi~i~~~~~v~~Li~~~~~g----~v~Gv~~~~-~g~~~~i~-----AkaVILATGG~~~ 198 (553)
T PRK07395 140 LTEQVLQRPNIEIISQALALSLWLEPETG----RCQGISLLY-QGQITWLR-----AGAVILATGGGGQ 198 (553)
T ss_pred HHHHHhhcCCcEEEECcChhhheecCCCC----EEEEEEEEE-CCeEEEEE-----cCEEEEcCCCCcc
Confidence 44444 35699999999999999874 23 899998874 56555554 7999999999754
No 34
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.39 E-value=9.9e-12 Score=136.08 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=48.4
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHh
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 290 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~ 290 (575)
+...+++.|++|++++.|++|+.+++ +|+||.+.+.++ .+++. +++.||||+|++....-++.
T Consensus 220 L~~~~~~~Gv~i~~~~~v~~l~~~~g-----~V~GV~~~~~~~-~~~i~----a~k~VVlAtGg~~~n~~~~~ 282 (574)
T PRK12842 220 LAKSALDLGIPILTGTPARELLTEGG-----RVVGARVIDAGG-ERRIT----ARRGVVLACGGFSHDLARIA 282 (574)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEEcCCc-eEEEE----eCCEEEEcCCCccchHHHHH
Confidence 34456778999999999999998866 999999885333 34555 45789999999986665544
No 35
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.36 E-value=1.7e-11 Score=134.28 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=48.5
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHH
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 289 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl 289 (575)
+.+.+++.|++|+++++|++|+.+++ +++||.+.+ ++..+++. +++.||||+|++....-++
T Consensus 223 L~~~a~~~Gv~i~~~t~v~~l~~~~g-----~v~GV~~~~-~~~~~~i~----a~k~VVlAtGg~~~n~~~~ 284 (581)
T PRK06134 223 LLKSAEDLGVRIWESAPARELLREDG-----RVAGAVVET-PGGLQEIR----ARKGVVLAAGGFPHDPARR 284 (581)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEeCC-----EEEEEEEEE-CCcEEEEE----eCCEEEEcCCCcccCHHHH
Confidence 44567778999999999999998765 999999875 34445565 4499999999998766553
No 36
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.36 E-value=1.3e-11 Score=134.00 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=35.4
Q ss_pred CCCCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 43 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 43 ~~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
.++.++||||||+|.+|+++|.++++ |.+|+||||+...
T Consensus 12 ~~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~ 51 (541)
T PRK07804 12 GWRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD 51 (541)
T ss_pred ccccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence 35668999999999999999999999 9999999999754
No 37
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.35 E-value=1.2e-11 Score=135.32 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=45.2
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEeeecCCCcEEEEccCCcCc
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~-~~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
+...+++.|+++++++.|++|+.+++ +++||.+.+ .+|+.+.+. ++.||||+|+++.
T Consensus 141 L~~~~~~~gi~i~~~t~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVVlATGG~~~ 198 (575)
T PRK05945 141 LVNNLRRYGVTIYDEWYVMRLILEDN-----QAKGVVMYHIADGRLEVVR-----AKAVMFATGGYGR 198 (575)
T ss_pred HHHHHhhCCCEEEeCcEEEEEEEECC-----EEEEEEEEEcCCCeEEEEE-----CCEEEECCCCCcC
Confidence 55556678999999999999998765 999998754 356555554 7999999999874
No 38
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.35 E-value=1.4e-11 Score=133.64 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=44.2
Q ss_pred hhhhc-CCCCeEEEcCcEEEEEEEecC-CCCCCeEEEEEEEeC-CCceeEEeeecCCCcEEEEccCCcCc
Q 008163 218 LLEYA-NPSGLTLLLHASVHKVLFRIK-GKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 218 ~l~~~-~~~g~~v~~~~~V~~l~~~~~-~~~~~~v~GV~~~~~-~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
+...+ +..|++|++++.|++|+.+++ +....+++||.+.+. +|+.+.+. ++.||||+|+++.
T Consensus 144 L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~-----Ak~VVlATGG~~~ 208 (536)
T PRK09077 144 LVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIR-----AKFVVLATGGASK 208 (536)
T ss_pred HHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEe-----cCeEEECCCCCCC
Confidence 44433 446999999999999998641 000028999998753 46555564 7999999999874
No 39
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.35 E-value=1.3e-11 Score=144.54 Aligned_cols=58 Identities=17% Similarity=0.355 Sum_probs=45.6
Q ss_pred CCCeEEEcCcEEEEEEEecC----CCCCCeEEEEEEEeC---CCceeEEeeecCCCcEEEEccCCcCcHH
Q 008163 224 PSGLTLLLHASVHKVLFRIK----GKARPVAHGVVFRDA---TGAKHRAYLKNGPKNEIIVSAGALGSPQ 286 (575)
Q Consensus 224 ~~g~~v~~~~~V~~l~~~~~----~~~~~~v~GV~~~~~---~g~~~~v~~~~~aa~~VVlAaG~~~sp~ 286 (575)
+.|++|+++++|++|+.+++ +....+|+||++.+. +|+.+.+. +|.||||||+|+...
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~-----AkaVILATGGf~~N~ 623 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLL-----ADAVILATGGFSNDH 623 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEE-----eceEEEecCCcccCc
Confidence 36999999999999999752 111238999999865 67666665 699999999999864
No 40
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.34 E-value=1.3e-11 Score=132.90 Aligned_cols=56 Identities=21% Similarity=0.373 Sum_probs=44.6
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCc
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
+...++ .|+++++++.|++|+.+++ +++||.+.+.+|+.+.+. ++.||||+|+++.
T Consensus 136 L~~~~~-~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~g~~~~i~-----Ak~VVlATGG~~~ 191 (510)
T PRK08071 136 LLQELV-PHVTVVEQEMVIDLIIENG-----RCIGVLTKDSEGKLKRYY-----ADYVVLASGGCGG 191 (510)
T ss_pred HHHHHh-cCCEEEECeEhhheeecCC-----EEEEEEEEECCCcEEEEE-----cCeEEEecCCCcc
Confidence 334444 6899999999999998765 999999886556655664 7999999999875
No 41
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.33 E-value=1.8e-11 Score=135.08 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=46.9
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEeeecCCCcEEEEccCCcCc
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~-~~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
+...+.+.|++++.++.|++|+.+++ +++||.+.+ .+|+.+.+. ++.||||||+++.
T Consensus 164 L~~~~~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~G~~~~i~-----AkaVVLATGG~g~ 221 (657)
T PRK08626 164 VDNEAIKLGVPVHDRKEAIALIHDGK-----RCYGAVVRCLITGELRAYV-----AKATLIATGGYGR 221 (657)
T ss_pred HHHHHHhCCCEEEeeEEEEEEEEECC-----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCcccC
Confidence 33456678999999999999998766 999999986 467666665 7999999999875
No 42
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.32 E-value=1.4e-11 Score=134.84 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=40.3
Q ss_pred CeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEeeecCCCcEEEEccCCcCc
Q 008163 226 GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 226 g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~-~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
++++++++.+++|+.++++ +|+||.+.+. +++.+.+. ++.||||||+++.
T Consensus 151 ~i~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 201 (589)
T PRK08641 151 LVTKYEGWEFLGAVLDDEG----VCRGIVAQDLFTMEIESFP-----ADAVIMATGGPGI 201 (589)
T ss_pred CcEEEeeEEEEEEEECCCC----EEEEEEEEECCCCcEEEEE-----CCEEEECCCCCcC
Confidence 4899999999999986543 9999999864 34444554 7999999999885
No 43
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.32 E-value=2.4e-11 Score=133.05 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=45.4
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEeeecCCCcEEEEccCCcCc
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~-~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
++..+.+.|++++.++.|++|+.++++ +++||.+.+. +|+...+. +|.||||+|+++.
T Consensus 154 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 212 (591)
T PRK07057 154 LYQQNVAAKTQFFVEWMALDLIRDADG----DVLGVTALEMETGDVYILE-----AKTTLFATGGAGR 212 (591)
T ss_pred HHHHHHhcCCEEEeCcEEEEEEEcCCC----eEEEEEEEEcCCCeEEEEE-----CCeEEECCCCccc
Confidence 445556689999999999999987543 8999998643 45545554 7999999999875
No 44
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.32 E-value=2.8e-11 Score=132.25 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=42.0
Q ss_pred CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEeeecCCCcEEEEccCCcCc
Q 008163 223 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 223 ~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~-~~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
+..|+++++++.|++|+.+++ +++||.+.+ .+|+.+.+. ++.||||+|+++.
T Consensus 145 ~~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVIlATGG~~~ 197 (582)
T PRK09231 145 KYPQIQRFDEHFVLDILVDDG-----HVRGLVAMNMMEGTLVQIR-----ANAVVMATGGAGR 197 (582)
T ss_pred cCCCcEEEeCeEEEEEEEeCC-----EEEEEEEEEcCCCcEEEEE-----CCEEEECCCCCcC
Confidence 335899999999999998766 999998764 356555564 7999999999774
No 45
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.32 E-value=1.9e-11 Score=132.89 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=57.1
Q ss_pred eeeeEECCCCccccHHH---hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEeeecCCCcEEE
Q 008163 201 IGGTIFDQNGQRHTAAD---LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEII 276 (575)
Q Consensus 201 ~~~~~~~~~g~r~~~~~---~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~-~g~~~~v~~~~~aa~~VV 276 (575)
.++.+++ +|.-.+... ++..+.+.|++++++++|+.|..+++ +++||++.+. +++..++. ++.||
T Consensus 136 ~ga~~~~-dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~d~~~g~~~~i~-----A~~VV 204 (546)
T PRK11101 136 IGAVKVP-DGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGD-----TVCGVRVRDHLTGETQEIH-----APVVV 204 (546)
T ss_pred eEEEEec-CcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCC-----eEEEEEEEEcCCCcEEEEE-----CCEEE
Confidence 3444444 554433322 34466778999999999999998776 8999998753 35445665 79999
Q ss_pred EccCCcCcHHHHHhhc
Q 008163 277 VSAGALGSPQLLMLSG 292 (575)
Q Consensus 277 lAaG~~~sp~lLl~Sg 292 (575)
+|||. ++.+|+.+.+
T Consensus 205 nAaG~-wa~~l~~~~g 219 (546)
T PRK11101 205 NAAGI-WGQHIAEYAD 219 (546)
T ss_pred ECCCh-hHHHHHHhcC
Confidence 99996 6888876665
No 46
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.30 E-value=3.1e-11 Score=132.22 Aligned_cols=58 Identities=26% Similarity=0.337 Sum_probs=45.2
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecC---CCCCCeEEEEEEEe-CCCceeEEeeecCCCcEEEEccCCcCc
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIK---GKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~---~~~~~~v~GV~~~~-~~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
+...+++.|+++++++.|++|+.+++ + +++||.+.+ .+|+.+.+. ++.||||+|+++.
T Consensus 146 L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 207 (583)
T PRK08205 146 LYQNCVKHGVEFFNEFYVLDLLLTETPSGP----VAAGVVAYELATGEIHVFH-----AKAVVFATGGSGR 207 (583)
T ss_pred HHHHHHhcCCEEEeCCEEEEEEecCCccCC----cEEEEEEEEcCCCeEEEEE-----eCeEEECCCCCcc
Confidence 44456678999999999999998752 3 899998854 356555554 7999999999874
No 47
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.30 E-value=4.1e-11 Score=130.67 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=42.6
Q ss_pred CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEeeecCCCcEEEEccCCcCc
Q 008163 223 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 223 ~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~-~~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
+..|++++.++.|++|+.+++ +|+||.+.+ .+|+.+.+. ++.||||+|+++.
T Consensus 144 ~~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 196 (580)
T TIGR01176 144 TYPQIMRYDEWFVTDLLVDDG-----RVCGLVAIEMAEGRLVTIL-----ADAVVLATGGAGR 196 (580)
T ss_pred hcCCCEEEeCeEEEEEEeeCC-----EEEEEEEEEcCCCcEEEEe-----cCEEEEcCCCCcc
Confidence 346899999999999999866 999998765 356655665 7999999999874
No 48
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.30 E-value=3.7e-11 Score=132.39 Aligned_cols=49 Identities=10% Similarity=0.137 Sum_probs=39.9
Q ss_pred eEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEeeecCCCcEEEEccCCcCcH
Q 008163 227 LTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSP 285 (575)
Q Consensus 227 ~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~-~~g~~~~v~~~~~aa~~VVlAaG~~~sp 285 (575)
+++++++.|++|+.+++ +++||.+.+ .+|+.+.+. ++.||||+|+++..
T Consensus 166 v~i~~~~~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i~-----Ak~VVlATGG~~~~ 215 (626)
T PRK07803 166 IKVFAECTITELLKDGG-----RIAGAFGYWRESGRFVLFE-----APAVVLATGGIGKS 215 (626)
T ss_pred eEEEeCCEEEEEEEECC-----EEEEEEEEECCCCeEEEEE-----cCeEEECCCcccCC
Confidence 99999999999998765 899998764 356555564 79999999997743
No 49
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.29 E-value=4.3e-11 Score=128.63 Aligned_cols=56 Identities=13% Similarity=0.226 Sum_probs=43.8
Q ss_pred hhhhcCC-CCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCc
Q 008163 218 LLEYANP-SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 218 ~l~~~~~-~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
+...+++ .|+++++++.|++|+.+++ +++||.+.+. +....+. ++.||||+|++..
T Consensus 134 L~~~~~~~~gi~i~~~~~v~~l~~~~g-----~v~Gv~~~~~-~~~~~i~-----A~~VVlAtGG~~~ 190 (488)
T TIGR00551 134 LVKKALNHPNIRIIEGENALDLLIETG-----RVVGVWVWNR-ETVETCH-----ADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHhcCCcEEEECeEeeeeeccCC-----EEEEEEEEEC-CcEEEEE-----cCEEEECCCcccC
Confidence 4444554 7999999999999998765 8999988863 4444454 7999999999875
No 50
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.29 E-value=3.5e-11 Score=131.83 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=43.9
Q ss_pred hhhhc-CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEeeecCCCcEEEEccCCcCc
Q 008163 218 LLEYA-NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 218 ~l~~~-~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~-~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
+...+ +..|++++.++.|++|+.+++ +++||.+.+. +|+.+.+. ++.||||+|+++.
T Consensus 143 L~~~~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----Ak~VIlATGG~~~ 201 (577)
T PRK06069 143 LYSRALRFDNIHFYDEHFVTSLIVENG-----VFKGVTAIDLKRGEFKVFQ-----AKAGIIATGGAGR 201 (577)
T ss_pred HHHHHHhcCCCEEEECCEEEEEEEECC-----EEEEEEEEEcCCCeEEEEE-----CCcEEEcCchhcc
Confidence 44444 346999999999999998766 9999988653 55544554 7999999999853
No 51
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.28 E-value=5.1e-11 Score=130.63 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=45.2
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEeeecCCCcEEEEccCCcCc
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~-~~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
+...+++.|+++++++.|++|+.+++ +++||.+.+ .+|+...+. ++.||||+|++..
T Consensus 135 L~~~~~~~gv~i~~~~~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i~-----Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 135 LYEQCLKLGVSFFNEYFALDLIHDDG-----RVRGVVAYDLKTGEIVFFR-----AKAVVLATGGYGR 192 (566)
T ss_pred HHHHHHHcCCEEEeccEEEEEEEeCC-----EEEEEEEEECCCCcEEEEE-----CCeEEECCCcccC
Confidence 44555566999999999999998865 999998865 356555565 7999999999864
No 52
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.25 E-value=6.7e-11 Score=129.64 Aligned_cols=52 Identities=15% Similarity=0.237 Sum_probs=42.3
Q ss_pred CCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEeeecCCCcEEEEccCCcCc
Q 008163 224 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 224 ~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~-~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
..|+++++++.|++|+.++++ +|+||.+.+. +|+.+.+. ++.||||||+++.
T Consensus 145 ~~gV~i~~~t~v~~Li~dd~g----rV~GV~~~~~~~g~~~~i~-----AkaVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVDGN----RARGIIARNLVTGEIETHS-----ADAVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEcCCC----EEEEEEEEECCCCcEEEEE-----cCEEEECCCCCcC
Confidence 458999999999999987554 9999999864 46555554 7999999999864
No 53
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.23 E-value=1.1e-10 Score=125.78 Aligned_cols=56 Identities=18% Similarity=0.319 Sum_probs=43.1
Q ss_pred hhhhcCC-CCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCc
Q 008163 218 LLEYANP-SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 218 ~l~~~~~-~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
+...+++ .|++++.++.|++|+.+++ +++||.+.+ .+..+.+. ++.||||+|+++.
T Consensus 142 L~~~~~~~~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~~~~~~i~-----Ak~VVLATGG~~~ 198 (513)
T PRK07512 142 LIAAVRATPSITVLEGAEARRLLVDDG-----AVAGVLAAT-AGGPVVLP-----ARAVVLATGGIGG 198 (513)
T ss_pred HHHHHHhCCCCEEEECcChhheeecCC-----EEEEEEEEe-CCeEEEEE-----CCEEEEcCCCCcC
Confidence 4444443 5899999999999988765 999999875 34444454 7999999999864
No 54
>PRK08275 putative oxidoreductase; Provisional
Probab=99.18 E-value=2.1e-10 Score=125.13 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=44.7
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEeeecCCCcEEEEccCCcCc
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~-~~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
+...+++.|++|++++.|++|+.++++ +++||.+.+ .+|+.+.+. ++.||||+|+++.
T Consensus 143 L~~~~~~~gv~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----Ak~VIlATGG~~~ 201 (554)
T PRK08275 143 LYRQLKRARVLITNRIMATRLLTDADG----RVAGALGFDCRTGEFLVIR-----AKAVILCCGAAGR 201 (554)
T ss_pred HHHHHHHCCCEEEcceEEEEEEEcCCC----eEEEEEEEecCCCcEEEEE-----CCEEEECCCCccc
Confidence 444566789999999999999997333 899998764 356555554 7999999999753
No 55
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.17 E-value=3.5e-10 Score=123.25 Aligned_cols=54 Identities=19% Similarity=0.112 Sum_probs=42.1
Q ss_pred hcCCCCeEEEcCcEEEEEEEecC--CCCCCeEEEEEEEe-CCCceeEEeeecCCCcEEEEccCCcC
Q 008163 221 YANPSGLTLLLHASVHKVLFRIK--GKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 283 (575)
Q Consensus 221 ~~~~~g~~v~~~~~V~~l~~~~~--~~~~~~v~GV~~~~-~~g~~~~v~~~~~aa~~VVlAaG~~~ 283 (575)
.+...+++++.++.|++|+.+++ + +|+||.+.+ .+|+.+.+. ++.||||||+++
T Consensus 135 ~l~~~~~~i~~~~~v~~Ll~d~~~~G----rV~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~ 191 (614)
T TIGR02061 135 AAKNALGDIFERIFIVKLLLDKNTPN----RIAGAVGFNVRANEVHVFK-----AKTVIVAAGGAV 191 (614)
T ss_pred HHHhCCCeEEcccEEEEEEecCCCCC----eEEEEEEEEeCCCcEEEEE-----CCEEEECCCccc
Confidence 34445689999999999998752 3 899998865 356666665 799999999985
No 56
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.17 E-value=6.3e-10 Score=114.38 Aligned_cols=61 Identities=21% Similarity=0.210 Sum_probs=46.9
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHhhc
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 292 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~Sg 292 (575)
|+..+...|++|.++++|++|..+++ .++-+.. .+|+.. ++ ++.||.|||. .+.+|+.++|
T Consensus 159 l~e~a~~~g~~i~ln~eV~~i~~~~d-----g~~~~~~--~~g~~~-~~-----ak~Vin~AGl-~Ad~la~~~g 219 (429)
T COG0579 159 LAEEAQANGVELRLNTEVTGIEKQSD-----GVFVLNT--SNGEET-LE-----AKFVINAAGL-YADPLAQMAG 219 (429)
T ss_pred HHHHHHHcCCEEEecCeeeEEEEeCC-----ceEEEEe--cCCcEE-EE-----eeEEEECCch-hHHHHHHHhC
Confidence 56666677999999999999999887 2223322 356543 54 7999999996 8999999998
No 57
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.17 E-value=3.2e-10 Score=124.55 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=42.5
Q ss_pred hhhhcCCC-CeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEeeecCCCcEEEEccCCcC
Q 008163 218 LLEYANPS-GLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 283 (575)
Q Consensus 218 ~l~~~~~~-g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~-~~g~~~~v~~~~~aa~~VVlAaG~~~ 283 (575)
+...+++. |++++.++.|++|+.+++ +++||.+.+ .+++...+. ++.||||+|++.
T Consensus 138 L~~~a~~~ggV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~ 195 (608)
T PRK06854 138 VAEAAKKALGDNVLNRVFITDLLVDDN-----RIAGAVGFSVRENKFYVFK-----AKAVIVATGGAA 195 (608)
T ss_pred HHHHHHhcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEEccCCcEEEEE-----CCEEEECCCchh
Confidence 33445444 599999999999998766 899997653 345555554 799999999976
No 58
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.16 E-value=3.5e-11 Score=124.17 Aligned_cols=59 Identities=29% Similarity=0.338 Sum_probs=44.8
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHhhc
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 292 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~Sg 292 (575)
+...+++.|++++++++|++|..+++ +++||.+. +|+ +. ++.||+|+|. ++++|+..++
T Consensus 153 l~~~~~~~Gv~i~~~~~V~~i~~~~~-----~v~gv~~~--~g~---i~-----ad~vV~a~G~-~s~~l~~~~~ 211 (358)
T PF01266_consen 153 LAAEAQRAGVEIRTGTEVTSIDVDGG-----RVTGVRTS--DGE---IR-----ADRVVLAAGA-WSPQLLPLLG 211 (358)
T ss_dssp HHHHHHHTT-EEEESEEEEEEEEETT-----EEEEEEET--TEE---EE-----ECEEEE--GG-GHHHHHHTTT
T ss_pred hHHHHHHhhhhccccccccchhhccc-----cccccccc--ccc---cc-----cceeEecccc-cceeeeeccc
Confidence 44466677999999999999999998 88888775 553 43 6999999996 7888877776
No 59
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.16 E-value=2.3e-10 Score=125.82 Aligned_cols=76 Identities=22% Similarity=0.243 Sum_probs=55.4
Q ss_pred CCCCccccHHH---hhhhcCCCCeEEEcCcEEEEEEEec-CCCCCCeEEEEEEEeC-CCceeEEeeecCCCcEEEEccCC
Q 008163 207 DQNGQRHTAAD---LLEYANPSGLTLLLHASVHKVLFRI-KGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGA 281 (575)
Q Consensus 207 ~~~g~r~~~~~---~l~~~~~~g~~v~~~~~V~~l~~~~-~~~~~~~v~GV~~~~~-~g~~~~v~~~~~aa~~VVlAaG~ 281 (575)
..+|.-.+... ++..+++.|++++.+++|++|..++ ++ ++++|.+.+. +++.+++. ++.||+|||+
T Consensus 224 ~~Dg~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g----~v~gV~v~d~~tg~~~~i~-----a~~VVnAaGa 294 (627)
T PLN02464 224 YYDGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTG----RIVGARVRDNLTGKEFDVY-----AKVVVNAAGP 294 (627)
T ss_pred ecCcEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCC----cEEEEEEEECCCCcEEEEE-----eCEEEECCCH
Confidence 34555433322 4556778899999999999998874 33 8899988753 45544565 7999999997
Q ss_pred cCcHHHHHhhc
Q 008163 282 LGSPQLLMLSG 292 (575)
Q Consensus 282 ~~sp~lLl~Sg 292 (575)
++.+++...+
T Consensus 295 -ws~~l~~~~g 304 (627)
T PLN02464 295 -FCDEVRKMAD 304 (627)
T ss_pred -hHHHHHHhcc
Confidence 6888887765
No 60
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.13 E-value=6.8e-10 Score=127.45 Aligned_cols=51 Identities=18% Similarity=0.130 Sum_probs=41.7
Q ss_pred CCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEeeecCCCcEEEEccCCcCc
Q 008163 224 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 224 ~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~-~~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
..++++.+++.+++|+.+++ +++||.+.+ .+|+.+.+. +|.|||||||++.
T Consensus 155 ~~~i~~~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~ 206 (897)
T PRK13800 155 RERIRIENRLMPVRVLTEGG-----RAVGAAALNTRTGEFVTVG-----AKAVILATGPCGR 206 (897)
T ss_pred cCCcEEEeceeeEEEEeeCC-----EEEEEEEEecCCCcEEEEE-----CCEEEECCCcccc
Confidence 34899999999999998765 999998865 357666665 7999999999864
No 61
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.12 E-value=6.3e-10 Score=113.25 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=44.4
Q ss_pred hhh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcC
Q 008163 218 LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 283 (575)
Q Consensus 218 ~l~-~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~ 283 (575)
++. ..+++|++|+.++.+.+|+.+++. .+.||.+.+.+++...++ ++.||||+||++
T Consensus 139 L~~~v~~~p~I~v~e~~~a~~li~~~~~----~~~Gv~~~~~~~~~~~~~-----a~~vVLATGG~g 196 (518)
T COG0029 139 LLKKVRNRPNITVLEGAEALDLIIEDGI----GVAGVLVLNRNGELGTFR-----AKAVVLATGGLG 196 (518)
T ss_pred HHHHHhcCCCcEEEecchhhhhhhcCCc----eEeEEEEecCCCeEEEEe-----cCeEEEecCCCc
Confidence 455 445689999999999999999883 566999986444455554 899999999854
No 62
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.09 E-value=1.7e-10 Score=105.79 Aligned_cols=36 Identities=39% Similarity=0.526 Sum_probs=30.0
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
.+|||+|||+|++|+++|+.|++ |+||+|+|+....
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~ 52 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSP 52 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCC
Confidence 47999999999999999999999 9999999998543
No 63
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.09 E-value=2.2e-09 Score=114.25 Aligned_cols=39 Identities=36% Similarity=0.597 Sum_probs=34.1
Q ss_pred cCCCCcccEEEECCCcchhHHHHhhcC-C--CeEEEEeccCC
Q 008163 42 AQPVSYYDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGS 80 (575)
Q Consensus 42 ~~~~~~~DvIIVGsG~aG~~~A~~La~-G--~~VlvLE~G~~ 80 (575)
.+.+..|||||||||+.|+++|+.|++ + .+|+||||...
T Consensus 40 ~~~~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~ 81 (497)
T PTZ00383 40 RLGSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD 81 (497)
T ss_pred cccCCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence 445567999999999999999999998 4 69999999863
No 64
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.08 E-value=1.6e-09 Score=116.92 Aligned_cols=39 Identities=33% Similarity=0.520 Sum_probs=35.3
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
|++.|||||||+|++|+.+|+.|++ |+||+||||++...
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~ 42 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLAS 42 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 4567999999999999999999999 99999999986544
No 65
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.08 E-value=6.4e-10 Score=118.01 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=46.2
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEec-CCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHh
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRI-KGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 290 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~-~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~ 290 (575)
+...+++.|++|+++++|++|+.+. ++ +++||.... ++ .++. ++.||||+|+++..+-++.
T Consensus 129 L~~~a~~~Gv~i~~~~~v~~l~~~~~~g----~v~gv~~~~-~~--~~i~-----ak~VIlAtGG~~~n~~~~~ 190 (432)
T TIGR02485 129 LYSSAERLGVEIRYGIAVDRIPPEAFDG----AHDGPLTTV-GT--HRIT-----TQALVLAAGGLGANRDWLR 190 (432)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEecCCCC----eEEEEEEcC-Cc--EEEE-----cCEEEEcCCCcccCHHHHH
Confidence 5556777899999999999999873 33 899987742 22 3454 6999999999988765443
No 66
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.06 E-value=1.4e-09 Score=114.80 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=31.5
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
+||||||+|+.|+++|++|++ |++|+||||+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 699999999999999999999 999999999974
No 67
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.06 E-value=6.1e-09 Score=111.23 Aligned_cols=81 Identities=25% Similarity=0.316 Sum_probs=52.0
Q ss_pred eeeeEECCCCccccHH---HhhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEeeecCCCcEEE
Q 008163 201 IGGTIFDQNGQRHTAA---DLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEII 276 (575)
Q Consensus 201 ~~~~~~~~~g~r~~~~---~~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~-~~g~~~~v~~~~~aa~~VV 276 (575)
.++.+++.++.-.... .|+..+++.|++++++++|++|..++++ .+ .|.+.+ ..|+..++. ++.||
T Consensus 164 ~gAl~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~----~v-~v~~~~~~~g~~~~i~-----A~~VV 233 (483)
T TIGR01320 164 VAANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDG----SW-TVTVKNTRTGGKRTLN-----TRFVF 233 (483)
T ss_pred eEEEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCC----eE-EEEEeeccCCceEEEE-----CCEEE
Confidence 3445555554433322 2555666779999999999999876542 22 233332 234334454 79999
Q ss_pred EccCCcCcHHHHHhhc
Q 008163 277 VSAGALGSPQLLMLSG 292 (575)
Q Consensus 277 lAaG~~~sp~lLl~Sg 292 (575)
+|||+ ++.+|+..+|
T Consensus 234 ~AAG~-~s~~La~~~G 248 (483)
T TIGR01320 234 VGAGG-GALPLLQKSG 248 (483)
T ss_pred ECCCc-chHHHHHHcC
Confidence 99997 6888887776
No 68
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.06 E-value=1.1e-09 Score=107.03 Aligned_cols=37 Identities=30% Similarity=0.301 Sum_probs=33.5
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
..+|||+|||+|++|+++|++|++ |++|+|||+....
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~ 60 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSF 60 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 347999999999999999999999 9999999998643
No 69
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.06 E-value=1.6e-09 Score=98.58 Aligned_cols=35 Identities=34% Similarity=0.395 Sum_probs=32.6
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
+-||||||+|++|+++|++||+ |+||+|+||.-..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~ 65 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSF 65 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeeccc
Confidence 6899999999999999999999 9999999998543
No 70
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.06 E-value=2.4e-09 Score=114.45 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=30.7
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
+||||||+|.+|+++|.+|++ |.+|+||||+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 799999999999999999999 99999999984
No 71
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.05 E-value=1.2e-09 Score=117.84 Aligned_cols=61 Identities=18% Similarity=0.102 Sum_probs=45.3
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHh
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 290 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~ 290 (575)
++..+++.|++++.+++|+++..+++ ..+|.+.+..|+..++. ++.||.|||. ++.+++.+
T Consensus 161 l~~~a~~~Ga~i~~~~~V~~i~~~~~------~~~v~~~~~~g~~~~i~-----a~~VVnAaG~-wa~~l~~~ 221 (502)
T PRK13369 161 NALDAAERGATILTRTRCVSARREGG------LWRVETRDADGETRTVR-----ARALVNAAGP-WVTDVIHR 221 (502)
T ss_pred HHHHHHHCCCEEecCcEEEEEEEcCC------EEEEEEEeCCCCEEEEE-----ecEEEECCCc-cHHHHHhh
Confidence 33456778999999999999987654 34677665445556665 7999999997 67777653
No 72
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.03 E-value=2.3e-09 Score=111.75 Aligned_cols=34 Identities=35% Similarity=0.434 Sum_probs=32.4
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
+|||+|||+|+.|+++|++|++ |.+|+||||+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence 6999999999999999999999 999999999864
No 73
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.00 E-value=1.6e-09 Score=116.48 Aligned_cols=39 Identities=28% Similarity=0.477 Sum_probs=35.6
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
+..+|||||||||.||+.+|.++++ |.+|+||||.....
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 3568999999999999999999999 99999999997654
No 74
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.00 E-value=2.5e-09 Score=104.21 Aligned_cols=37 Identities=32% Similarity=0.384 Sum_probs=33.8
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
..+|||+|||+|++|+++|+.|++ |++|+||||+...
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~ 56 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAF 56 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 347999999999999999999999 9999999999653
No 75
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.00 E-value=7e-09 Score=109.32 Aligned_cols=38 Identities=39% Similarity=0.634 Sum_probs=33.1
Q ss_pred CCCCcccEEEECCCcchhHHHHhhcC--C-CeEEEEeccCC
Q 008163 43 QPVSYYDYIIIGGGTAGCPLAATLSQ--N-ASVLLLERGGS 80 (575)
Q Consensus 43 ~~~~~~DvIIVGsG~aG~~~A~~La~--G-~~VlvLE~G~~ 80 (575)
+....|||||||+|+.|+++|++|++ | .+|+||||+..
T Consensus 26 ~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~ 66 (407)
T TIGR01373 26 EPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL 66 (407)
T ss_pred CCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence 34557999999999999999999997 7 49999999854
No 76
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.98 E-value=2.7e-09 Score=114.09 Aligned_cols=37 Identities=32% Similarity=0.337 Sum_probs=33.0
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC---CCeEEEEeccCC
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGS 80 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~---G~~VlvLE~G~~ 80 (575)
.+.++||||||+|++|+++|++|++ |.+|+|||++..
T Consensus 21 ~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 21 GDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred CCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 3557999999999999999999997 689999999854
No 77
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.98 E-value=4.8e-09 Score=109.53 Aligned_cols=33 Identities=36% Similarity=0.616 Sum_probs=31.4
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
|||||||+|++|+++|++|++ |.+|+|||++..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 799999999999999999999 999999999864
No 78
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.98 E-value=7e-09 Score=110.86 Aligned_cols=64 Identities=30% Similarity=0.413 Sum_probs=44.1
Q ss_pred hhhhcCCCC-eEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEeeecCCCcEEEEccCCcCcHHHHHhhc
Q 008163 218 LLEYANPSG-LTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 292 (575)
Q Consensus 218 ~l~~~~~~g-~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~-~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~Sg 292 (575)
|...+++.| ++++++++|++|..++++ ++ .|.+.+ ..|+..++. ++.||+|||+ ++.+++..+|
T Consensus 189 L~~~a~~~Ggv~i~~~teV~~I~~~~dg----~~-~v~~~~~~~G~~~~i~-----A~~VVvaAGg-~s~~L~~~~G 254 (494)
T PRK05257 189 LVGYLQKQGNFELQLGHEVRDIKRNDDG----SW-TVTVKDLKTGEKRTVR-----AKFVFIGAGG-GALPLLQKSG 254 (494)
T ss_pred HHHHHHhCCCeEEEeCCEEEEEEECCCC----CE-EEEEEEcCCCceEEEE-----cCEEEECCCc-chHHHHHHcC
Confidence 445555555 899999999999876552 33 343332 235433454 7999999998 6788888777
No 79
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.98 E-value=7.3e-09 Score=108.74 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=51.1
Q ss_pred hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEeeecCCCcEEEEccCCcCcHHHHHhhc
Q 008163 221 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 292 (575)
Q Consensus 221 ~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~-~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~Sg 292 (575)
.|...|.++++.++|+.++.+++ +.||++.|. +|+.++++ ++.||.|||. ++-+++...+
T Consensus 173 ~A~~~Ga~il~~~~v~~~~re~~------v~gV~~~D~~tg~~~~ir-----a~~VVNAaGp-W~d~i~~~~~ 233 (532)
T COG0578 173 DAAEHGAEILTYTRVESLRREGG------VWGVEVEDRETGETYEIR-----ARAVVNAAGP-WVDEILEMAG 233 (532)
T ss_pred HHHhcccchhhcceeeeeeecCC------EEEEEEEecCCCcEEEEE-----cCEEEECCCc-cHHHHHHhhc
Confidence 56678999999999999998764 889999984 47788886 8999999996 8888888886
No 80
>PLN02661 Putative thiazole synthesis
Probab=98.96 E-value=4.7e-09 Score=105.08 Aligned_cols=35 Identities=37% Similarity=0.532 Sum_probs=31.9
Q ss_pred CcccEEEECCCcchhHHHHhhcC--CCeEEEEeccCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGS 80 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~--G~~VlvLE~G~~ 80 (575)
.++||+|||+|++|+++|+.|++ |++|+||||+..
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~ 127 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS 127 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc
Confidence 46999999999999999999996 799999999754
No 81
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.95 E-value=2.9e-09 Score=112.58 Aligned_cols=36 Identities=44% Similarity=0.719 Sum_probs=33.6
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
+.|||||||+|++|+++|+.|++ |++|+||||+...
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~ 40 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSA 40 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 46999999999999999999999 9999999999754
No 82
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.95 E-value=4.4e-09 Score=110.25 Aligned_cols=34 Identities=38% Similarity=0.747 Sum_probs=31.4
Q ss_pred cccEEEECCCcchhHHHHhhcC---CCeEEEEeccCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGS 80 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~---G~~VlvLE~G~~ 80 (575)
.|||+|||+|++|+++|++|++ |++|+||||+..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~ 38 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG 38 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3899999999999999999997 799999999864
No 83
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.94 E-value=1.6e-08 Score=97.30 Aligned_cols=37 Identities=35% Similarity=0.504 Sum_probs=33.5
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
..++||||||+|.+|+++|.+||+ |++|+|||.-+..
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeq 40 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQ 40 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccc
Confidence 347999999999999999999999 9999999987653
No 84
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.93 E-value=1.3e-08 Score=107.70 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=41.7
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHh
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 290 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~ 290 (575)
++..+++.|++|+++++|++|..+++ ++++|... ++ ++. ++.||+|+|+ ++..++..
T Consensus 207 l~~~~~~~G~~i~~~~~V~~i~~~~~-----~~~~v~t~--~~---~~~-----a~~VV~a~G~-~~~~l~~~ 263 (416)
T PRK00711 207 LAAMAEQLGVKFRFNTPVDGLLVEGG-----RITGVQTG--GG---VIT-----ADAYVVALGS-YSTALLKP 263 (416)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEecCC-----EEEEEEeC--Cc---EEe-----CCEEEECCCc-chHHHHHH
Confidence 44566778999999999999988766 66666543 33 343 7999999997 55666543
No 85
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.91 E-value=1.6e-08 Score=106.22 Aligned_cols=44 Identities=30% Similarity=0.375 Sum_probs=39.5
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCCCCCc
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNI 87 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~~~~~ 87 (575)
|+++|||||||+|.+|+++|..|++ |+|||+||+.+..++....
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence 4668999999999999999999999 9999999999988875543
No 86
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.90 E-value=4e-08 Score=104.34 Aligned_cols=64 Identities=22% Similarity=0.247 Sum_probs=43.7
Q ss_pred hhhhc-CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEE-eCCCceeEEeeecCCCcEEEEccCCcCcHHHHHhhc
Q 008163 218 LLEYA-NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFR-DATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 292 (575)
Q Consensus 218 ~l~~~-~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~-~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~Sg 292 (575)
|...+ +..|++++++++|++|..++++ ..+ |.+. ...++..++. ++.||+|||+ ++.+|+..+|
T Consensus 190 L~~~l~~~~Gv~i~~~~~V~~I~~~~d~----~w~-v~v~~t~~g~~~~i~-----Ad~VV~AAGa-wS~~La~~~G 255 (497)
T PRK13339 190 LAKHLESHPNAQVKYNHEVVDLERLSDG----GWE-VTVKDRNTGEKREQV-----ADYVFIGAGG-GAIPLLQKSG 255 (497)
T ss_pred HHHHHHhCCCcEEEeCCEEEEEEECCCC----CEE-EEEEecCCCceEEEE-----cCEEEECCCc-chHHHHHHcC
Confidence 45555 3458999999999999876332 322 3332 2234323454 7999999998 8899998887
No 87
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.90 E-value=6.4e-09 Score=100.50 Aligned_cols=39 Identities=36% Similarity=0.439 Sum_probs=35.6
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
+....|+||||+|.-|+++|++||+ |.++++||+-+...
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph 43 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPH 43 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCc
Confidence 4568999999999999999999999 99999999987654
No 88
>PRK10015 oxidoreductase; Provisional
Probab=98.87 E-value=5e-09 Score=110.69 Aligned_cols=37 Identities=35% Similarity=0.621 Sum_probs=34.2
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
+++|||||||+|++|+++|+.|++ |++|+||||+...
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~ 40 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA 40 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 357999999999999999999999 9999999999764
No 89
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.84 E-value=1e-08 Score=106.50 Aligned_cols=33 Identities=36% Similarity=0.588 Sum_probs=31.4
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
|||||||+|++|+++|++|++ |.+|+|||++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 799999999999999999999 999999999864
No 90
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.84 E-value=1e-08 Score=107.40 Aligned_cols=37 Identities=41% Similarity=0.701 Sum_probs=34.6
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
.+|||||||+|++|+++|+.|++ |.+|+||||+...+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G 39 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPG 39 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 47999999999999999999999 99999999998765
No 91
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.81 E-value=2.8e-08 Score=106.63 Aligned_cols=35 Identities=40% Similarity=0.669 Sum_probs=32.4
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
+.+|||||||+|.||+.+|..||+ |.+|+|||+..
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 347999999999999999999999 99999999874
No 92
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.80 E-value=1.2e-09 Score=115.28 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=0.0
Q ss_pred hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHhhc
Q 008163 221 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 292 (575)
Q Consensus 221 ~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~Sg 292 (575)
.+++.|++|++++.|.+++.+++ ++++|.+.+..| ..++. ++.||-|+| ...|..++|
T Consensus 99 ~l~e~gv~v~~~t~v~~v~~~~~-----~i~~V~~~~~~g-~~~i~-----A~~~IDaTG---~g~l~~~aG 156 (428)
T PF12831_consen 99 MLAEAGVEVLLGTRVVDVIRDGG-----RITGVIVETKSG-RKEIR-----AKVFIDATG---DGDLAALAG 156 (428)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc-----cccccccccccc-ccccc-----ccccccccc---ccccccccc
Confidence 44668999999999999999887 899999987666 55664 899999999 357777787
No 93
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.77 E-value=3.7e-08 Score=110.07 Aligned_cols=34 Identities=41% Similarity=0.526 Sum_probs=32.0
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
.+||||||+|++|+++|++|++ |.+|+|||++..
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~ 294 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEA 294 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 5899999999999999999999 999999999853
No 94
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.77 E-value=2.3e-08 Score=98.09 Aligned_cols=55 Identities=20% Similarity=0.304 Sum_probs=44.7
Q ss_pred hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHH
Q 008163 221 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 286 (575)
Q Consensus 221 ~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~ 286 (575)
++..+|+++..++ |.+|+.|++ .+.||.+.++.|+..+.+ |.-.|+|-|.|..=|
T Consensus 157 a~slpNV~~eeGt-V~sLlee~g-----vvkGV~yk~k~gee~~~~-----ApLTvVCDGcfSnlR 211 (509)
T KOG1298|consen 157 AASLPNVRLEEGT-VKSLLEEEG-----VVKGVTYKNKEGEEVEAF-----APLTVVCDGCFSNLR 211 (509)
T ss_pred HhcCCCeEEeeee-HHHHHhccC-----eEEeEEEecCCCceEEEe-----cceEEEecchhHHHH
Confidence 4566899987776 889988887 999999998878777766 799999999875533
No 95
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.76 E-value=8.6e-08 Score=100.41 Aligned_cols=32 Identities=50% Similarity=0.602 Sum_probs=29.4
Q ss_pred EEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 51 IIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 51 IIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
||||+|++|+++|++|++ |++|+||||++..+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G 33 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIG 33 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcccc
Confidence 699999999999999999 99999999987643
No 96
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.75 E-value=5.7e-08 Score=93.17 Aligned_cols=54 Identities=24% Similarity=0.449 Sum_probs=45.2
Q ss_pred CeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcH-HHHH
Q 008163 226 GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP-QLLM 289 (575)
Q Consensus 226 g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp-~lLl 289 (575)
-++|+++++|++|+.+++ +|.||++.+.+|+...+. .+.||+|+|+|+-. .-||
T Consensus 159 ~~ki~~nskvv~il~n~g-----kVsgVeymd~sgek~~~~-----~~~VVlatGGf~ysd~~lL 213 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRNNG-----KVSGVEYMDASGEKSKII-----GDAVVLATGGFGYSDKELL 213 (477)
T ss_pred HHhhhhcceeeeeecCCC-----eEEEEEEEcCCCCcccee-----cCceEEecCCcCcChHHHH
Confidence 489999999999996666 999999999888876664 69999999999964 4343
No 97
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.74 E-value=6.8e-08 Score=103.67 Aligned_cols=39 Identities=33% Similarity=0.540 Sum_probs=35.8
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 84 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~~ 84 (575)
..|||||||||.+|+++|..||+ |++|+||||....++.
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~ 41 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGR 41 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcc
Confidence 36999999999999999999999 9999999998877763
No 98
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.71 E-value=3.2e-07 Score=97.63 Aligned_cols=63 Identities=19% Similarity=0.402 Sum_probs=46.5
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCc
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
+...++.+|++++++++|++|+++.++ ..++|+||++.. +|+..++.+ .+++.||+++|++..
T Consensus 232 L~~~Le~~GV~f~~~t~VtdL~~~~d~-~~~~VtgI~~~~-~~~~~~I~l--~~~DlVivTnGs~t~ 294 (576)
T PRK13977 232 LIKYLEDHGVDFQYGTKVTDIDFDITG-GKKTATAIHLTR-NGKEETIDL--TEDDLVFVTNGSITE 294 (576)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCC-CceEEEEEEEEe-CCceeEEEe--cCCCEEEEeCCcCcc
Confidence 455778889999999999999986221 234899999974 344444332 278999999998743
No 99
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.68 E-value=1.1e-07 Score=102.76 Aligned_cols=73 Identities=23% Similarity=0.320 Sum_probs=52.0
Q ss_pred eeEECCCCccccHHHhhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCc
Q 008163 203 GTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 282 (575)
Q Consensus 203 ~~~~~~~g~r~~~~~~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~ 282 (575)
+.+++.+|.......+.+.+++.|++|+++++|++|..+++ ++.+|.+. +|+. +. ++.||+|+|..
T Consensus 220 g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~--~g~~--~~-----ad~vV~a~~~~ 285 (493)
T TIGR02730 220 GINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENG-----KAVGVKLA--DGEK--IY-----AKRIVSNATRW 285 (493)
T ss_pred eEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCC-----cEEEEEeC--CCCE--EE-----cCEEEECCChH
Confidence 33445555544334466677888999999999999998876 88899875 5643 33 68999999976
Q ss_pred CcHHHHH
Q 008163 283 GSPQLLM 289 (575)
Q Consensus 283 ~sp~lLl 289 (575)
.+-..|+
T Consensus 286 ~~~~~Ll 292 (493)
T TIGR02730 286 DTFGKLL 292 (493)
T ss_pred HHHHHhC
Confidence 5554443
No 100
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.67 E-value=2.8e-07 Score=96.45 Aligned_cols=37 Identities=38% Similarity=0.525 Sum_probs=34.0
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
+.++||||||+|++|+++|++|++ |.+|+|+|++...
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~ 39 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG 39 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence 457999999999999999999999 9999999999754
No 101
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.64 E-value=4e-07 Score=92.94 Aligned_cols=85 Identities=29% Similarity=0.418 Sum_probs=58.6
Q ss_pred hhhh-cCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEeeecCCCcEEEEccCCcCcHHHHHhhcCCC
Q 008163 218 LLEY-ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHN 295 (575)
Q Consensus 218 ~l~~-~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~-~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~Sg~~g 295 (575)
++.. .+..|++++++++|++|...++ .-.-|.+.+ ..|+..++. ++-|++.||| ++=.||.+||
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~d-----g~W~v~~~~~~~~~~~~v~-----a~FVfvGAGG-~aL~LLqksg--- 252 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGD-----GRWEVKVKDLKTGEKREVR-----AKFVFVGAGG-GALPLLQKSG--- 252 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCC-----CCEEEEEEecCCCCeEEEE-----CCEEEECCch-HhHHHHHHcC---
Confidence 5553 3456999999999999999877 333455543 246666775 8999999998 7888889888
Q ss_pred ceeeecCCccCCCCCCCCCceEEeeCCC
Q 008163 296 ITVVLDQPLVGQGMSDNPMNAIFVPSPV 323 (575)
Q Consensus 296 i~~~~~~p~vG~~l~dh~~~~~~~~~~~ 323 (575)
|| =|+++..=|...-+...+.
T Consensus 253 i~-------e~~gyggfPVsG~fl~~~n 273 (488)
T PF06039_consen 253 IP-------EGKGYGGFPVSGQFLRCKN 273 (488)
T ss_pred Ch-------hhcccCCCcccceEEecCC
Confidence 21 2555555565554444443
No 102
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.63 E-value=5.5e-08 Score=99.46 Aligned_cols=75 Identities=24% Similarity=0.299 Sum_probs=56.3
Q ss_pred CCCccccHHH--hhh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEeeecCCCcEEEEccCCcC
Q 008163 208 QNGQRHTAAD--LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG 283 (575)
Q Consensus 208 ~~g~r~~~~~--~l~-~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~-~g~~~~v~~~~~aa~~VVlAaG~~~ 283 (575)
.+|+...+.. .+. -|.+.|.++.-..+|.+|+.++++ ++.|++++|. .|+.++|+ ++.||-|||-|
T Consensus 217 yDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~----kv~Ga~~rD~iTG~e~~I~-----Ak~VVNATGpf- 286 (680)
T KOG0042|consen 217 YDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDG----KVIGARARDHITGKEYEIR-----AKVVVNATGPF- 286 (680)
T ss_pred ecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCC----ceeeeEEEEeecCcEEEEE-----EEEEEeCCCCc-
Confidence 4565555543 222 345679999999999999999885 8999999973 68888887 89999999975
Q ss_pred cHHHHHhhc
Q 008163 284 SPQLLMLSG 292 (575)
Q Consensus 284 sp~lLl~Sg 292 (575)
|-.|+.+-.
T Consensus 287 sDsIr~Mdd 295 (680)
T KOG0042|consen 287 SDSIRKMDD 295 (680)
T ss_pred cHHHHhhcc
Confidence 555555543
No 103
>PRK06185 hypothetical protein; Provisional
Probab=98.61 E-value=2.6e-07 Score=97.38 Aligned_cols=38 Identities=34% Similarity=0.512 Sum_probs=34.4
Q ss_pred CCCCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 43 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 43 ~~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
++..+|||+|||+|++|+++|+.|++ |.+|+|||+.+.
T Consensus 2 ~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 2 AEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred CccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 34568999999999999999999999 999999999853
No 104
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.59 E-value=1.2e-07 Score=93.90 Aligned_cols=63 Identities=22% Similarity=0.298 Sum_probs=47.9
Q ss_pred hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe----CCCce-------eEEeeecCCCcEEEEccCCcCc--HHH
Q 008163 221 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD----ATGAK-------HRAYLKNGPKNEIIVSAGALGS--PQL 287 (575)
Q Consensus 221 ~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~----~~g~~-------~~v~~~~~aa~~VVlAaG~~~s--p~l 287 (575)
.|+..|++|+++..+.+|+++.++ .|.||.+.| ++|.. .+++ ++..|+|-|.-++ -++
T Consensus 192 kAEe~GvEiyPg~aaSevly~edg----sVkGiaT~D~GI~k~G~pKd~FerGme~h-----ak~TifAEGc~G~Lskqi 262 (621)
T KOG2415|consen 192 KAEELGVEIYPGFAASEVLYDEDG----SVKGIATNDVGISKDGAPKDTFERGMEFH-----AKVTIFAEGCHGSLSKQI 262 (621)
T ss_pred HHHhhCceeccccchhheeEcCCC----cEeeEeeccccccCCCCccccccccceec-----ceeEEEeccccchhHHHH
Confidence 788899999999999999999886 899998875 23321 2333 7899999997664 456
Q ss_pred HHhhc
Q 008163 288 LMLSG 292 (575)
Q Consensus 288 Ll~Sg 292 (575)
+.+-.
T Consensus 263 ~kkf~ 267 (621)
T KOG2415|consen 263 IKKFD 267 (621)
T ss_pred HHHhC
Confidence 65544
No 105
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.56 E-value=4.9e-07 Score=94.79 Aligned_cols=37 Identities=35% Similarity=0.475 Sum_probs=34.2
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
+...+||+|||+|++|+++|+.|++ |.+|+||||.+.
T Consensus 3 ~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 3 RRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 4567999999999999999999999 999999999864
No 106
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.56 E-value=2.4e-07 Score=94.42 Aligned_cols=50 Identities=16% Similarity=0.349 Sum_probs=37.6
Q ss_pred hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcH
Q 008163 221 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP 285 (575)
Q Consensus 221 ~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp 285 (575)
.....|++|+ +.+|++|+.+++ ++.||... +|.. +. ++.||+|+|.|.+.
T Consensus 105 l~~~~nl~i~-~~~V~~l~~e~~-----~v~GV~~~--~g~~--~~-----a~~vVlaTGtfl~G 154 (392)
T PF01134_consen 105 LESHPNLTII-QGEVTDLIVENG-----KVKGVVTK--DGEE--IE-----ADAVVLATGTFLNG 154 (392)
T ss_dssp HHTSTTEEEE-ES-EEEEEECTT-----EEEEEEET--TSEE--EE-----ECEEEE-TTTGBTS
T ss_pred HhcCCCeEEE-EcccceEEecCC-----eEEEEEeC--CCCE--Ee-----cCEEEEecccccCc
Confidence 3456899997 678999999987 99999875 6653 43 79999999995443
No 107
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.54 E-value=1.8e-07 Score=88.36 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=35.1
Q ss_pred hhh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHhh
Q 008163 218 LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 291 (575)
Q Consensus 218 ~l~-~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~S 291 (575)
|+. .+++.+++++++++|+++..+++ + .-|.+ .++ .++. ++.||+|+|.+..|+++..-
T Consensus 87 yl~~~~~~~~l~i~~~~~V~~v~~~~~-----~-w~v~~--~~~--~~~~-----a~~VVlAtG~~~~p~~p~~~ 146 (203)
T PF13738_consen 87 YLQEYAERFGLEIRFNTRVESVRRDGD-----G-WTVTT--RDG--RTIR-----ADRVVLATGHYSHPRIPDIP 146 (203)
T ss_dssp HHHHHHHHTTGGEETS--EEEEEEETT-----T-EEEEE--TTS---EEE-----EEEEEE---SSCSB---S-T
T ss_pred HHHHHHhhcCcccccCCEEEEEEEecc-----E-EEEEE--Eec--ceee-----eeeEEEeeeccCCCCccccc
Confidence 444 56667888999999999999977 3 23433 355 3443 79999999998888876543
No 108
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.52 E-value=5.1e-07 Score=85.03 Aligned_cols=32 Identities=31% Similarity=0.525 Sum_probs=30.2
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
+++|||+|++|+++|+.|.+ |.+|+|+|||.-
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~G 35 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRG 35 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCC
Confidence 68999999999999999999 999999999953
No 109
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.52 E-value=7.2e-07 Score=94.74 Aligned_cols=39 Identities=28% Similarity=0.431 Sum_probs=34.8
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
+....+|+|||+|++|+++|.+|.+ |.+|+|+||++..+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG 46 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG 46 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 3446899999999999999999999 99999999997654
No 110
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.51 E-value=2.5e-07 Score=100.37 Aligned_cols=72 Identities=19% Similarity=0.201 Sum_probs=50.7
Q ss_pred eEECCCCccccHHHhhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcC
Q 008163 204 TIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 283 (575)
Q Consensus 204 ~~~~~~g~r~~~~~~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~ 283 (575)
.+++..|.......+...+++.|++|++++.|++|..+++ ++++|++. +|+. +. ++.||+|++...
T Consensus 211 ~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~-----~~~~V~~~--~g~~--~~-----ad~VI~a~~~~~ 276 (502)
T TIGR02734 211 VWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGG-----RATAVHLA--DGER--LD-----ADAVVSNADLHH 276 (502)
T ss_pred EEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCC-----EEEEEEEC--CCCE--EE-----CCEEEECCcHHH
Confidence 3345555443333355666778999999999999998876 88888775 5543 33 789999988766
Q ss_pred cHHHHH
Q 008163 284 SPQLLM 289 (575)
Q Consensus 284 sp~lLl 289 (575)
+-..|+
T Consensus 277 ~~~~l~ 282 (502)
T TIGR02734 277 TYRRLL 282 (502)
T ss_pred HHHHhc
Confidence 665554
No 111
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.51 E-value=1.2e-06 Score=92.73 Aligned_cols=39 Identities=33% Similarity=0.509 Sum_probs=34.9
Q ss_pred CCCCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 43 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 43 ~~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
-+..+|||+|||+|++|+++|..|++ |++|+|+||.+..
T Consensus 14 ~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 14 TRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred CCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 34457999999999999999999999 9999999999753
No 112
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.50 E-value=1.4e-06 Score=95.25 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=46.8
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEeeecCCCcEEEEccCCcCc
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~-~~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
+...+.+.|++++.++.+++|+.++++ +|+||.+.+ .+|+.+.+. ++.||||||+++.
T Consensus 132 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 190 (570)
T PRK05675 132 LYQGNLKNGTTFLNEWYAVDLVKNQDG----AVVGVIAICIETGETVYIK-----SKATVLATGGAGR 190 (570)
T ss_pred HHHHHhccCCEEEECcEEEEEEEcCCC----eEEEEEEEEcCCCcEEEEe-----cCeEEECCCCccc
Confidence 445566789999999999999987444 999999865 467666665 7999999999885
No 113
>PLN02985 squalene monooxygenase
Probab=98.49 E-value=5.4e-07 Score=97.11 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=34.8
Q ss_pred ccCCCCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 41 AAQPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 41 ~~~~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
+...+..|||||||+|++|+++|..|++ |.+|+||||..
T Consensus 37 ~~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 37 EERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred ccCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 3445668999999999999999999999 99999999974
No 114
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.47 E-value=7.4e-07 Score=89.31 Aligned_cols=34 Identities=41% Similarity=0.726 Sum_probs=32.0
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
|||+|||+|++|+++|+.|++ |.+|+|+||....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~ 35 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFP 35 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 799999999999999999999 9999999999653
No 115
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.46 E-value=1.7e-06 Score=89.27 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=49.1
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHhhc
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 292 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~Sg 292 (575)
+...+++.|++++.+++|+++..+++ ++++|.+. +++..++. ++.||||+|++-|..|+...+
T Consensus 269 L~~~~~~~Gg~il~g~~V~~i~~~~~-----~v~~V~t~--~g~~~~l~-----AD~vVLAaGaw~S~gL~a~l~ 331 (419)
T TIGR03378 269 LKHRFEQLGGVMLPGDRVLRAEFEGN-----RVTRIHTR--NHRDIPLR-----ADHFVLASGSFFSNGLVAEFD 331 (419)
T ss_pred HHHHHHHCCCEEEECcEEEEEEeeCC-----eEEEEEec--CCccceEE-----CCEEEEccCCCcCHHHHhhcC
Confidence 44466778999999999999998887 88887764 33223443 799999999987888877665
No 116
>PRK07208 hypothetical protein; Provisional
Probab=98.42 E-value=2.3e-06 Score=92.33 Aligned_cols=41 Identities=29% Similarity=0.274 Sum_probs=36.8
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCCC
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 84 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~~ 84 (575)
|++..||||||+|++|+++|++|++ |.+|+|+|+.+..++.
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~ 42 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGI 42 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 3567899999999999999999999 9999999998877653
No 117
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.39 E-value=2.1e-06 Score=92.91 Aligned_cols=71 Identities=15% Similarity=0.102 Sum_probs=48.5
Q ss_pred CCCCccccHHHhhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEeeecCCCcEEEEccCCcCcH
Q 008163 207 DQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSP 285 (575)
Q Consensus 207 ~~~g~r~~~~~~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~-~g~~~~v~~~~~aa~~VVlAaG~~~sp 285 (575)
...|...-+..+.+.+++.|.+|+++++|++|..+++ ++++|.+.+. +|...++. ++.||+++....+.
T Consensus 227 ~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~~~~~~~~~~~~-----ad~VI~~~~~~~~~ 296 (492)
T TIGR02733 227 LHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGG-----RAGWVVVVDSRKQEDLNVK-----ADDVVANLPPQSLL 296 (492)
T ss_pred ecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCC-----eEEEEEEecCCCCceEEEE-----CCEEEECCCHHHHH
Confidence 3445444444455566668999999999999999887 8889987642 12223443 79999998875444
Q ss_pred HH
Q 008163 286 QL 287 (575)
Q Consensus 286 ~l 287 (575)
+|
T Consensus 297 ~l 298 (492)
T TIGR02733 297 EL 298 (492)
T ss_pred Hh
Confidence 43
No 118
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.38 E-value=1.1e-06 Score=92.13 Aligned_cols=76 Identities=18% Similarity=0.205 Sum_probs=56.5
Q ss_pred eeeeEECCCCccccHHH---hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEE
Q 008163 201 IGGTIFDQNGQRHTAAD---LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIV 277 (575)
Q Consensus 201 ~~~~~~~~~g~r~~~~~---~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVl 277 (575)
.++.+.|.+|...+... |...|++.|+.|+.+|.|++|....+ +..||++. .|... +..||-
T Consensus 173 ~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-----~~~gVeT~--~G~ie--------t~~~VN 237 (856)
T KOG2844|consen 173 YGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETD-----KFGGVETP--HGSIE--------TECVVN 237 (856)
T ss_pred eeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC-----Cccceecc--Cccee--------cceEEe
Confidence 34455677887776654 45578889999999999999999887 55588876 67542 588999
Q ss_pred ccCCcCcHHHHHhhc
Q 008163 278 SAGALGSPQLLMLSG 292 (575)
Q Consensus 278 AaG~~~sp~lLl~Sg 292 (575)
|||. +.-..-.++|
T Consensus 238 aaGv-WAr~Vg~m~g 251 (856)
T KOG2844|consen 238 AAGV-WAREVGAMAG 251 (856)
T ss_pred chhH-HHHHhhhhcC
Confidence 9995 4555555565
No 119
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.38 E-value=1.7e-06 Score=92.07 Aligned_cols=34 Identities=44% Similarity=0.585 Sum_probs=32.1
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
++|||||||||++|+.+|.+|++ |++|+|+||++
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 36999999999999999999999 99999999985
No 120
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.38 E-value=1.4e-06 Score=93.35 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=32.5
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
+..||+||||+|++|..+|.+|++ |++|+|+|+.+
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 457999999999999999999999 99999999874
No 121
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.37 E-value=1.7e-06 Score=92.89 Aligned_cols=34 Identities=38% Similarity=0.635 Sum_probs=32.2
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
...||+||||+|++|+.+|.+|++ |++|+|+|++
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 457999999999999999999999 9999999986
No 122
>PRK06126 hypothetical protein; Provisional
Probab=98.36 E-value=8.3e-06 Score=89.36 Aligned_cols=37 Identities=32% Similarity=0.520 Sum_probs=33.5
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
...++||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 3457999999999999999999999 999999998753
No 123
>PRK06847 hypothetical protein; Provisional
Probab=98.35 E-value=2.5e-06 Score=88.87 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=32.9
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
.+..||+|||+|++|+++|..|++ |.+|+|+|+...
T Consensus 2 ~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 2 AAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 346899999999999999999999 999999999864
No 124
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.34 E-value=3.4e-06 Score=88.18 Aligned_cols=33 Identities=33% Similarity=0.609 Sum_probs=31.4
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
||||||+|++|+++|+.|++ |.+|+|+||.+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence 89999999999999999999 9999999999764
No 125
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.34 E-value=2.8e-06 Score=89.46 Aligned_cols=33 Identities=33% Similarity=0.540 Sum_probs=31.2
Q ss_pred ccEEEECCCcchhHHHHhhcC-C--CeEEEEeccCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGS 80 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G--~~VlvLE~G~~ 80 (575)
|||||||+|++|+++|..|++ | .+|+|+||.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 899999999999999999999 7 99999999864
No 126
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.34 E-value=4.4e-06 Score=89.60 Aligned_cols=36 Identities=31% Similarity=0.468 Sum_probs=33.0
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
+..|||||||+|++|+.+|.+|++ |++|+|+|++..
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~ 39 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRN 39 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence 457999999999999999999999 999999999743
No 127
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.34 E-value=2.7e-06 Score=89.20 Aligned_cols=36 Identities=39% Similarity=0.517 Sum_probs=33.0
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
.+.|||||||+|++|+++|..|++ |++|+|+|+.+.
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 39 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP 39 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 456999999999999999999999 999999999753
No 128
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.33 E-value=7.2e-06 Score=83.17 Aligned_cols=217 Identities=18% Similarity=0.193 Sum_probs=112.6
Q ss_pred cccCCCCcccEEEECCCcchhHHHHhhcC------CCeEEEEeccCCCCCCCCcccchhhhhccCCCCCCCCCCcccCCC
Q 008163 40 TAAQPVSYYDYIIIGGGTAGCPLAATLSQ------NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISED 113 (575)
Q Consensus 40 ~~~~~~~~~DvIIVGsG~aG~~~A~~La~------G~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (575)
.+..+...||+||||+|++|+.+|++++. .++|+++|+|.....+.-... .. +.. ..+. . .
T Consensus 11 ~~~~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~~~~~----~~---~~~--~c~~--~--~ 77 (486)
T COG2509 11 QEALMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRLCPKD----EK---KLE--KCPK--C--D 77 (486)
T ss_pred hHHHhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhhhcccc----cc---chh--hcCC--C--C
Confidence 33456678999999999999999999985 478999999976532110000 00 000 0000 0 0
Q ss_pred cccccCcceecchhhcccceec-CCCh-hhhhc--CCCCh-hhhhhhhhhhhhhcccCCC----CchhHHHHH-HHHHHc
Q 008163 114 GVINSRARVLGGGSCLNAGFYT-RAAP-YYVRE--VGWDE-RLVNESYQWVEKVVAFEPP----MRQWQSAVR-DGLVEV 183 (575)
Q Consensus 114 ~~~~~~g~~lGG~s~~~~~~~~-r~~~-~~~~~--~gw~~-~~l~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~ 183 (575)
..+--.+.||+..+..+... +|.. .+++. .+|+. -++..+.+.. .+.+... ..+..+.+. ..+++.
T Consensus 78 --~~~I~~G~GgaG~fs~g~lnl~P~~Gg~~~~~~~d~~~~~~~~~~vd~~--~vqfG~~g~~~~~~~~e~ikd~e~~aa 153 (486)
T COG2509 78 --PCPIVIGFGGAGLFSDGILNLRPIRGGDVHERTKDTDEFWELVNLVDES--NVQFGAPGAGTFSDLTEQIKDIEFRAA 153 (486)
T ss_pred --CceeEecccccccccccceecccccccchhhhhCChHHHHHHHhccchh--heecCCCcCcccCCchhhhhHHHHHHh
Confidence 00112467888887777654 3322 11111 11211 0111111111 1111111 011112222 122233
Q ss_pred CCC--CCCCCCcCCCCcceeeeeEECCCCccccHHHhhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCc
Q 008163 184 GVL--PYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGA 261 (575)
Q Consensus 184 g~~--~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~ 261 (575)
|.. ...- .....| .+.-+.-...+....+..|++++.+|+|++|.++++ .+.+|... +|.
T Consensus 154 ~a~~eil~~------~~rHiG-----TD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~-----~~~~v~~~--~g~ 215 (486)
T COG2509 154 GAGEEILPI------YQRHIG-----TDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDN-----EVLGVKLT--KGE 215 (486)
T ss_pred CCCceeeec------cccccC-----ccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCC-----ceEEEEcc--CCc
Confidence 321 1000 000001 111122222344466778999999999999999887 67788776 564
Q ss_pred eeEEeeecCCCcEEEEccCCcCcHHHHHhhcCCCcee
Q 008163 262 KHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHNITV 298 (575)
Q Consensus 262 ~~~v~~~~~aa~~VVlAaG~~~sp~lLl~Sg~~gi~~ 298 (575)
. +. ++.||||-|--+.-.+-++..+.|+.+
T Consensus 216 ~--i~-----~~~vvlA~Grsg~dw~~~l~~K~Gv~~ 245 (486)
T COG2509 216 E--IE-----ADYVVLAPGRSGRDWFEMLHKKLGVKM 245 (486)
T ss_pred E--Ee-----cCEEEEccCcchHHHHHHHHHhcCccc
Confidence 4 33 799999999877777766666656543
No 129
>PRK08013 oxidoreductase; Provisional
Probab=98.33 E-value=4.5e-06 Score=87.72 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=32.8
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
++|||+|||+|++|+++|..|++ |.+|+|||+.+.
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 36999999999999999999999 999999999875
No 130
>PRK06834 hypothetical protein; Provisional
Probab=98.32 E-value=5.3e-06 Score=89.17 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=32.6
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
.++||||||+|++|+++|..|++ |.+|+||||.+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 36999999999999999999999 999999999864
No 131
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.31 E-value=6e-06 Score=86.47 Aligned_cols=35 Identities=37% Similarity=0.680 Sum_probs=32.8
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
.|||||||+|++|+++|+.|++ |.+|+|+||+...
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 6899999999999999999999 9999999999653
No 132
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.31 E-value=4.7e-06 Score=87.82 Aligned_cols=33 Identities=39% Similarity=0.620 Sum_probs=31.6
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
+|||+|||+|++|+++|+.|++ |.+|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 5899999999999999999999 99999999986
No 133
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.30 E-value=1.2e-05 Score=87.93 Aligned_cols=37 Identities=38% Similarity=0.500 Sum_probs=33.9
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
+.++||+|||+|++|+++|..|++ |.+|+||||....
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~ 45 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL 45 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 457999999999999999999999 9999999998653
No 134
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.29 E-value=7e-06 Score=86.88 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=36.1
Q ss_pred CCCCcccEEEECCCcchhHHHHhhcC-CCe-EEEEeccCCCCC
Q 008163 43 QPVSYYDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGGSPYG 83 (575)
Q Consensus 43 ~~~~~~DvIIVGsG~aG~~~A~~La~-G~~-VlvLE~G~~~~~ 83 (575)
+..+.+||+|||+|.+|+++|++|.+ |.. ++|+||....++
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg 46 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG 46 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCC
Confidence 44668999999999999999999999 877 999999976543
No 135
>PRK07190 hypothetical protein; Provisional
Probab=98.29 E-value=3.9e-06 Score=90.15 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=33.6
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
...+||||||+|++|+++|..|++ |.+|+||||.+..
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 346999999999999999999999 9999999999653
No 136
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.29 E-value=1.8e-06 Score=88.85 Aligned_cols=35 Identities=37% Similarity=0.623 Sum_probs=30.8
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
+|||||||+|++|+++|..|++ |.+|+|+||.+..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 5899999999999999999999 9999999998754
No 137
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.28 E-value=9.6e-06 Score=88.77 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=46.5
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEeeecCCCcEEEEccCCcCc
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~-~~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
+...+++.|++|++++.|++|+.+++ +|+||.+.+ .+|+.+.+. ++.||||||+++.
T Consensus 125 L~~~~~~~gi~i~~~~~~~~Li~~~g-----~v~Ga~~~~~~~g~~~~i~-----AkaVILATGG~~~ 182 (565)
T TIGR01816 125 LYQQNLKADTSFFNEYFALDLLMEDG-----ECRGVIAYCLETGEIHRFR-----AKAVVLATGGYGR 182 (565)
T ss_pred HHHHHHhCCCEEEeccEEEEEEeeCC-----EEEEEEEEEcCCCcEEEEE-----eCeEEECCCCccc
Confidence 44556678999999999999998765 999998864 356666665 7999999999875
No 138
>PRK08244 hypothetical protein; Provisional
Probab=98.27 E-value=4.3e-06 Score=90.45 Aligned_cols=34 Identities=38% Similarity=0.585 Sum_probs=32.2
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
+|||+|||+|++|+++|..|++ |.+|+||||.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4899999999999999999999 999999999864
No 139
>PLN02697 lycopene epsilon cyclase
Probab=98.26 E-value=4.2e-06 Score=89.92 Aligned_cols=33 Identities=33% Similarity=0.466 Sum_probs=31.1
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
..|||||||+|++|+++|..|++ |++|+|||++
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 46999999999999999999999 9999999986
No 140
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.25 E-value=5.8e-06 Score=86.70 Aligned_cols=32 Identities=38% Similarity=0.607 Sum_probs=30.5
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
+||||||+|++|+++|+.|++ |++|+||||..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 699999999999999999999 99999999964
No 141
>PRK06184 hypothetical protein; Provisional
Probab=98.23 E-value=3.5e-06 Score=91.28 Aligned_cols=36 Identities=33% Similarity=0.587 Sum_probs=33.1
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
+++||+|||+|++|+++|..|++ |.+|+||||.+..
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 46999999999999999999999 9999999998643
No 142
>PLN02463 lycopene beta cyclase
Probab=98.23 E-value=4.2e-06 Score=88.43 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=32.3
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
...|||||||+|++|+++|..|++ |++|+|||+.+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 346999999999999999999999 99999999864
No 143
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.21 E-value=6.9e-06 Score=88.32 Aligned_cols=32 Identities=44% Similarity=0.728 Sum_probs=30.6
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
|||||||+|.+|+.+|..+++ |.+|+|+|++.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 799999999999999999999 99999999974
No 144
>PRK07045 putative monooxygenase; Reviewed
Probab=98.21 E-value=1.6e-05 Score=83.33 Aligned_cols=37 Identities=35% Similarity=0.439 Sum_probs=34.1
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
++.+||+|||+|++|+++|..|++ |.+|+|+||.+..
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 457999999999999999999999 9999999999754
No 145
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.20 E-value=8.1e-06 Score=85.38 Aligned_cols=32 Identities=44% Similarity=0.649 Sum_probs=31.1
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
.+||+|||+|++|+++|..|++ |++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 5899999999999999999999 9999999998
No 146
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.16 E-value=1e-05 Score=84.78 Aligned_cols=34 Identities=32% Similarity=0.410 Sum_probs=32.2
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
.+||+|||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 5899999999999999999999 999999999874
No 147
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.16 E-value=4.8e-06 Score=83.89 Aligned_cols=69 Identities=19% Similarity=0.273 Sum_probs=52.4
Q ss_pred CCCCccccHHHhhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHH
Q 008163 207 DQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 286 (575)
Q Consensus 207 ~~~g~r~~~~~~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~ 286 (575)
+.+|...-+..+.+.+++.|.+|++++.|.+|+.|++ +++||.+. +|+. ++ ++.||-.|+-+.|=.
T Consensus 259 p~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~g-----ka~GV~L~--dG~e--v~-----sk~VvSNAt~~~Tf~ 324 (561)
T KOG4254|consen 259 PRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSG-----KAVGVRLA--DGTE--VR-----SKIVVSNATPWDTFE 324 (561)
T ss_pred CCCChhHHHHHHHHHHHhccceeeehhhhhheeccCC-----eEEEEEec--CCcE--EE-----eeeeecCCchHHHHH
Confidence 4455444444466788899999999999999999996 99999998 6764 43 578888888776664
Q ss_pred HHH
Q 008163 287 LLM 289 (575)
Q Consensus 287 lLl 289 (575)
-|+
T Consensus 325 kLl 327 (561)
T KOG4254|consen 325 KLL 327 (561)
T ss_pred HhC
Confidence 444
No 148
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.16 E-value=1.2e-05 Score=84.06 Aligned_cols=33 Identities=39% Similarity=0.660 Sum_probs=31.2
Q ss_pred cEEEECCCcchhHHHHhhcC-C-CeEEEEeccCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSP 81 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~~~ 81 (575)
||||||+|++|+++|..|++ | .+|+|+||....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 89999999999999999999 9 999999999654
No 149
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.16 E-value=1.1e-05 Score=84.65 Aligned_cols=35 Identities=31% Similarity=0.504 Sum_probs=32.5
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
...||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 45899999999999999999999 999999999864
No 150
>PRK11445 putative oxidoreductase; Provisional
Probab=98.13 E-value=3.1e-05 Score=79.90 Aligned_cols=33 Identities=36% Similarity=0.572 Sum_probs=30.8
Q ss_pred ccEEEECCCcchhHHHHhhcCCCeEEEEeccCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQNASVLLLERGGS 80 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~G~~VlvLE~G~~ 80 (575)
|||+|||+|++|+++|..|++..+|+||||.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGKMKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhccCCEEEEECCCc
Confidence 899999999999999999988789999999864
No 151
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.12 E-value=2e-05 Score=82.09 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=30.7
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
+||+|||+|++|+++|..|++ |.+|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 799999999999999999999 99999999975
No 152
>PRK06996 hypothetical protein; Provisional
Probab=98.06 E-value=2.6e-05 Score=81.88 Aligned_cols=38 Identities=26% Similarity=0.466 Sum_probs=33.2
Q ss_pred CCCCcccEEEECCCcchhHHHHhhcC-C----CeEEEEeccCC
Q 008163 43 QPVSYYDYIIIGGGTAGCPLAATLSQ-N----ASVLLLERGGS 80 (575)
Q Consensus 43 ~~~~~~DvIIVGsG~aG~~~A~~La~-G----~~VlvLE~G~~ 80 (575)
+..++|||+|||+|++|+++|+.|++ | ++|+|+|+...
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 44567999999999999999999998 7 47999999753
No 153
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.05 E-value=2.5e-05 Score=84.82 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=30.6
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEec
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLER 77 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~ 77 (575)
...|||+|||||++|+++|.+|++ |++|+|+|+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 446999999999999999999999 999999975
No 154
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.05 E-value=2.7e-06 Score=64.68 Aligned_cols=32 Identities=31% Similarity=0.440 Sum_probs=28.9
Q ss_pred EECCCcchhHHHHhhcC-CCeEEEEeccCCCCC
Q 008163 52 IIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 83 (575)
Q Consensus 52 IVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~ 83 (575)
|||+|++|+++|++|++ |.+|+|+|+.+..++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence 89999999999999999 999999999987654
No 155
>PRK07236 hypothetical protein; Provisional
Probab=98.05 E-value=6e-05 Score=78.86 Aligned_cols=36 Identities=28% Similarity=0.294 Sum_probs=32.8
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
+..+||||||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 346899999999999999999999 999999999853
No 156
>PRK07588 hypothetical protein; Provisional
Probab=98.03 E-value=2e-05 Score=82.67 Aligned_cols=32 Identities=34% Similarity=0.385 Sum_probs=30.4
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 79999999999999999999 999999999854
No 157
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.01 E-value=7.2e-05 Score=82.00 Aligned_cols=37 Identities=27% Similarity=0.478 Sum_probs=33.8
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
...++||+|||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus 20 ~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~ 57 (547)
T PRK08132 20 DPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT 57 (547)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 3467999999999999999999999 999999999864
No 158
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.00 E-value=8.4e-06 Score=87.95 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=28.9
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 83 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~ 83 (575)
.|+|||+|++|+++|..|.+ |..|+++||.+..++
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG 38 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGG 38 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSG
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCc
Confidence 48999999999999999999 999999999987653
No 159
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=1.7e-05 Score=82.15 Aligned_cols=34 Identities=41% Similarity=0.574 Sum_probs=30.8
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
+.|||||||+|-||+-+|...|+ |.+++||--.-
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 46999999999999999999999 99999996553
No 160
>PLN02487 zeta-carotene desaturase
Probab=97.99 E-value=0.00012 Score=79.66 Aligned_cols=97 Identities=11% Similarity=0.112 Sum_probs=57.7
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHhhcCCCce
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHNIT 297 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~Sg~~gi~ 297 (575)
+.+..++.|.+|++++.|++|..+.++++..+++||.+.+ ++....+. ++.||+|++.....+||-.+-+ ..+
T Consensus 301 l~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-~~~~~~~~-----aD~VV~A~p~~~~~~Llp~~~~-~~~ 373 (569)
T PLN02487 301 IAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-ATEKEIVK-----ADAYVAACDVPGIKRLLPEQWR-EYE 373 (569)
T ss_pred HHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-CCCceEEE-----CCEEEECCCHHHHHHhCCchhh-ccH
Confidence 4456677899999999999999985321223589998852 33333343 7999999997655555422210 000
Q ss_pred eeecCCccCCCCCCCCCceEEeeCCCcc
Q 008163 298 VVLDQPLVGQGMSDNPMNAIFVPSPVPV 325 (575)
Q Consensus 298 ~~~~~p~vG~~l~dh~~~~~~~~~~~~~ 325 (575)
. ...+ ++|...|.+.+...++.++
T Consensus 374 ~---~~~l-~~L~~~pi~tv~L~~d~~v 397 (569)
T PLN02487 374 F---FDNI-YKLVGVPVVTVQLRYNGWV 397 (569)
T ss_pred H---HhHH-hcCCCeeEEEEEEEecccc
Confidence 0 0001 1344566666666776654
No 161
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.98 E-value=4.8e-05 Score=82.67 Aligned_cols=79 Identities=19% Similarity=0.192 Sum_probs=57.6
Q ss_pred eeeEECCCCccccHHH---hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEeeecCCCcEEEE
Q 008163 202 GGTIFDQNGQRHTAAD---LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIV 277 (575)
Q Consensus 202 ~~~~~~~~g~r~~~~~---~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~-~g~~~~v~~~~~aa~~VVl 277 (575)
++.+++ +|.-.+... ++..+.+.|++++++++|++|..+++ ++.||++.+. +|+..++. ++.||+
T Consensus 116 ga~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~~~~~g~~~~i~-----a~~VVn 184 (516)
T TIGR03377 116 GAVKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGG-----RVTGVKVEDHKTGEEERIE-----AQVVIN 184 (516)
T ss_pred EEEEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECC-----EEEEEEEEEcCCCcEEEEE-----cCEEEE
Confidence 444444 564433322 44567778999999999999998776 8999998752 45555665 799999
Q ss_pred ccCCcCcHHHHHhhc
Q 008163 278 SAGALGSPQLLMLSG 292 (575)
Q Consensus 278 AaG~~~sp~lLl~Sg 292 (575)
|||. ++.+|+.+.|
T Consensus 185 AaG~-wa~~l~~~~g 198 (516)
T TIGR03377 185 AAGI-WAGRIAEYAG 198 (516)
T ss_pred CCCc-chHHHHHhcC
Confidence 9996 6888887666
No 162
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.96 E-value=9.6e-05 Score=72.00 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=32.6
Q ss_pred CcccEEEECCCcchhHHHHhhcC-----CCeEEEEeccCCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGSPY 82 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-----G~~VlvLE~G~~~~ 82 (575)
.++||+|||+|..|+++|+-|.+ |++|+|+||.....
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtyt 126 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYT 126 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccc
Confidence 47999999999999999998876 69999999987543
No 163
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.96 E-value=8.2e-05 Score=76.32 Aligned_cols=105 Identities=12% Similarity=0.120 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEECCCCccccHHH-hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEE
Q 008163 174 SAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAAD-LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHG 252 (575)
Q Consensus 174 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~G 252 (575)
..+.+.+.+.|++.. ....+.++|...+..+... ++..+++.|++|+++++|++| +++ + ..
T Consensus 57 ~d~~~fF~~~Gi~~~----------~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~-----~-~~ 118 (376)
T TIGR03862 57 VALQDWARGLGIETF----------VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGG-----T-LR 118 (376)
T ss_pred HHHHHHHHHCCCceE----------ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCC-----c-EE
Confidence 567788888887521 1112345665555555544 666888899999999999998 332 2 34
Q ss_pred EEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHH------HHhhcCCCceeeecCCc
Q 008163 253 VVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL------LMLSGAHNITVVLDQPL 304 (575)
Q Consensus 253 V~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~l------Ll~Sg~~gi~~~~~~p~ 304 (575)
|.+. .+. ..++ ++.||||+|+...|++ +..+.++|+++....|.
T Consensus 119 v~~~--~~~-~~~~-----a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh~i~~~~Pa 168 (376)
T TIGR03862 119 FETP--DGQ-STIE-----ADAVVLALGGASWSQLGSDGAWQQVLDQRGVSVAPFAPA 168 (376)
T ss_pred EEEC--CCc-eEEe-----cCEEEEcCCCccccccCCCcHHHHHHHHCCCcccCCcCe
Confidence 4443 222 2343 8999999999776654 33344677766655553
No 164
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.95 E-value=4.1e-05 Score=79.62 Aligned_cols=33 Identities=45% Similarity=0.717 Sum_probs=30.4
Q ss_pred cEEEECCCcchhHHHHhh--cC-CCeEEEEeccCCC
Q 008163 49 DYIIIGGGTAGCPLAATL--SQ-NASVLLLERGGSP 81 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~L--a~-G~~VlvLE~G~~~ 81 (575)
||||||+|++|+++|++| ++ |++|+|||+....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 77 9999999998653
No 165
>PRK06753 hypothetical protein; Provisional
Probab=97.95 E-value=6.9e-05 Score=78.01 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=31.1
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
||||||+|++|+++|..|++ |.+|+|+||.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 79999999999999999999 9999999999753
No 166
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.94 E-value=8.8e-06 Score=73.78 Aligned_cols=35 Identities=29% Similarity=0.523 Sum_probs=31.1
Q ss_pred cccEEEECCCcchhHHHHhhcC---CCeEEEEeccCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP 81 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~---G~~VlvLE~G~~~ 81 (575)
+.||||||+|.+|+++||..++ .+||.++|..-.+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP 113 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP 113 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence 5799999999999999999996 6899999987443
No 167
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.94 E-value=5.1e-05 Score=82.38 Aligned_cols=33 Identities=24% Similarity=0.526 Sum_probs=30.3
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEec
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLER 77 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~ 77 (575)
...|||+|||+|++|+++|..|++ |++|+|+|.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~ 243 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE 243 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 346999999999999999999999 999999974
No 168
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.93 E-value=7e-06 Score=87.11 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=33.7
Q ss_pred CCCCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 43 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 43 ~~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
++...|||||||+|++|+++|+.|++ |++|+||||..
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 44557999999999999999999999 99999999974
No 169
>PTZ00058 glutathione reductase; Provisional
Probab=97.92 E-value=1.1e-05 Score=87.70 Aligned_cols=35 Identities=37% Similarity=0.595 Sum_probs=32.5
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
+.+||+||||+|++|..+|.+|++ |++|+|+|++.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~ 81 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY 81 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 357999999999999999999999 99999999874
No 170
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.92 E-value=9e-06 Score=78.70 Aligned_cols=38 Identities=34% Similarity=0.658 Sum_probs=35.0
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 84 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~~ 84 (575)
.||+||||||.+|+++|..|++ |++||||||-+..+++
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGN 39 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGN 39 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCc
Confidence 3899999999999999999999 9999999999887764
No 171
>PRK05868 hypothetical protein; Validated
Probab=97.88 E-value=0.0001 Score=76.67 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=30.9
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
||+|||+|++|+++|..|++ |.+|+|+|+.+..
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 89999999999999999999 9999999998653
No 172
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.87 E-value=8.2e-05 Score=71.76 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=50.4
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHhhcCCCce
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHNIT 297 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~Sg~~gi~ 297 (575)
|....+..|.++.+|.++.++..+.... --.-+.+. +|+..+++ .+.||-||| +.+.++-..||-.-+|
T Consensus 202 ~~edF~~~gg~i~~n~~l~g~~~n~~~~---~~Ypivv~--ngk~ee~r-----~~~~vtc~g-l~sdr~aa~sgc~~dP 270 (453)
T KOG2665|consen 202 FGEDFDFMGGRIYTNFRLQGIAQNKEAT---FSYPIVVL--NGKGEEKR-----TKNVVTCAG-LQSDRCAALSGCELDP 270 (453)
T ss_pred HHHHHHHhcccccccceeccchhccCCC---CCCceEEe--cCccceeE-----EeEEEEecc-ccHhHHHHHhCCCCCC
Confidence 4455667799999999999997765521 11123343 45444554 455666665 8999999999944444
Q ss_pred eeecCCccCCCCCC
Q 008163 298 VVLDQPLVGQGMSD 311 (575)
Q Consensus 298 ~~~~~p~vG~~l~d 311 (575)
.+. |.-|.++.-
T Consensus 271 riV--pfrG~ylll 282 (453)
T KOG2665|consen 271 RIV--PFRGEYLLL 282 (453)
T ss_pred eee--eccchhhhc
Confidence 322 335555543
No 173
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.86 E-value=8.6e-06 Score=85.24 Aligned_cols=31 Identities=45% Similarity=0.813 Sum_probs=30.3
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
|||||||+|++|+++|+.|++ |++|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 899999999999999999999 9999999997
No 174
>PRK09897 hypothetical protein; Provisional
Probab=97.86 E-value=0.0001 Score=79.30 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=30.4
Q ss_pred ccEEEECCCcchhHHHHhhcC-C--CeEEEEeccCCCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPY 82 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G--~~VlvLE~G~~~~ 82 (575)
++|+|||+|++|+++|.+|.+ + .+|.|+|++...+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G 39 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG 39 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence 479999999999999999987 3 6999999986543
No 175
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.84 E-value=4.9e-05 Score=79.60 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=33.4
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
.-+|+|||+|++||++|..|.+ |+.|+|+||.+..+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iG 42 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIG 42 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCcc
Confidence 5689999999999999999999 99999999998764
No 176
>PRK06370 mercuric reductase; Validated
Probab=97.84 E-value=1.4e-05 Score=85.73 Aligned_cols=39 Identities=46% Similarity=0.631 Sum_probs=34.7
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
|+.+|||||||+|++|+.+|.+|++ |++|+|+|++...+
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG 41 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGG 41 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCC
Confidence 4567999999999999999999999 99999999975433
No 177
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.81 E-value=1.6e-05 Score=83.19 Aligned_cols=38 Identities=34% Similarity=0.427 Sum_probs=34.4
Q ss_pred CCCCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 43 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 43 ~~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
++++.|||||||+|++|+++|+.|++ |.+|+|+|+.+.
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 34567999999999999999999999 999999999854
No 178
>PRK06116 glutathione reductase; Validated
Probab=97.80 E-value=1.4e-05 Score=85.38 Aligned_cols=35 Identities=37% Similarity=0.572 Sum_probs=32.5
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
+.+|||||||+|++|+.+|.+|++ |++|+|+|++.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~ 37 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKR 37 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 357999999999999999999999 99999999973
No 179
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.80 E-value=0.00026 Score=70.28 Aligned_cols=36 Identities=31% Similarity=0.529 Sum_probs=33.1
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
++||++|||+|++|-++|.++++ |++...+|+....
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~L 74 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL 74 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCcc
Confidence 57999999999999999999999 9999999996543
No 180
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.79 E-value=0.00016 Score=84.33 Aligned_cols=64 Identities=23% Similarity=0.182 Sum_probs=47.4
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHhhc
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 292 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~Sg 292 (575)
++...++.|+++++++.|+++.-+ + ++.+|++...+|+..++. ++.|+++.|..-+..|+...|
T Consensus 357 l~~~L~~~GV~i~~~~~v~~i~g~-~-----~v~~V~l~~~~g~~~~i~-----~D~V~va~G~~Pnt~L~~~lg 420 (985)
T TIGR01372 357 ARAEARELGIEVLTGHVVAATEGG-K-----RVSGVAVARNGGAGQRLE-----ADALAVSGGWTPVVHLFSQRG 420 (985)
T ss_pred HHHHHHHcCCEEEcCCeEEEEecC-C-----cEEEEEEEecCCceEEEE-----CCEEEEcCCcCchhHHHHhcC
Confidence 444556789999999999998532 2 677888774334445554 799999999888888777665
No 181
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.79 E-value=6.1e-05 Score=71.79 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=32.9
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC-C------CeEEEEeccCCCC
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ-N------ASVLLLERGGSPY 82 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~-G------~~VlvLE~G~~~~ 82 (575)
+.+.-.++|||+|+.|..+|+.|++ + ..|.++|+.....
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ 52 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAG 52 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccc
Confidence 3445779999999999999999999 5 6899999886544
No 182
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.78 E-value=1.7e-05 Score=84.60 Aligned_cols=35 Identities=40% Similarity=0.563 Sum_probs=32.6
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
++|||||||+|++|+.+|.+|++ |++|+|+|+++.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~ 37 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA 37 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC
Confidence 46999999999999999999999 999999999854
No 183
>PRK07538 hypothetical protein; Provisional
Probab=97.74 E-value=0.00021 Score=75.52 Aligned_cols=32 Identities=38% Similarity=0.578 Sum_probs=30.4
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
||+|||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 89999999999999999999 999999999864
No 184
>PRK09126 hypothetical protein; Provisional
Probab=97.74 E-value=2e-05 Score=82.65 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=33.0
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
+|||||||+|++|+++|..|++ |.+|+|+||....
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 38 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA 38 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 6999999999999999999999 9999999999753
No 185
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.73 E-value=2e-05 Score=84.00 Aligned_cols=35 Identities=37% Similarity=0.651 Sum_probs=32.3
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
++|||||||+|++|+.+|.+|++ |++|+|+|++..
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~ 36 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKL 36 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccccc
Confidence 36999999999999999999999 999999999643
No 186
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.72 E-value=0.00022 Score=76.50 Aligned_cols=31 Identities=42% Similarity=0.685 Sum_probs=29.4
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
|+||||+|++|+.+|..|++ |.+|+|+|++.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 79999999999999999999 99999999873
No 187
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.70 E-value=2.5e-05 Score=83.75 Aligned_cols=33 Identities=36% Similarity=0.527 Sum_probs=31.0
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
+||+||||+|++|+.+|.+|++ |++|+|+|+..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~ 36 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS 36 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 5999999999999999999999 99999999743
No 188
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.70 E-value=2.9e-05 Score=81.67 Aligned_cols=36 Identities=36% Similarity=0.585 Sum_probs=33.3
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
+.+||+||||+|++|-++|.+|++ |+||+|+|++..
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~ 38 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGER 38 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCC
Confidence 457999999999999999999999 988999999953
No 189
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.69 E-value=7.4e-05 Score=76.23 Aligned_cols=64 Identities=19% Similarity=0.259 Sum_probs=38.7
Q ss_pred HHhhh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHH
Q 008163 216 ADLLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 288 (575)
Q Consensus 216 ~~~l~-~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lL 288 (575)
..|+. .+++..-.+..+++|++|..+.+++ .....|++.+.+|+..++. ++.||||+| .+|.+=
T Consensus 98 ~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~--~~~~~V~~~~~~g~~~~~~-----ar~vVla~G--~~P~iP 162 (341)
T PF13434_consen 98 NDYLRWVAEQLDNQVRYGSEVTSIEPDDDGD--EDLFRVTTRDSDGDGETYR-----ARNVVLATG--GQPRIP 162 (341)
T ss_dssp HHHHHHHHCCGTTTEEESEEEEEEEEEEETT--EEEEEEEEEETTS-EEEEE-----ESEEEE------EE---
T ss_pred HHHHHHHHHhCCCceEECCEEEEEEEecCCC--ccEEEEEEeecCCCeeEEE-----eCeEEECcC--CCCCCC
Confidence 34666 5566565588999999999876521 1355666665567666665 799999999 666653
No 190
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.68 E-value=3.2e-05 Score=82.39 Aligned_cols=41 Identities=32% Similarity=0.361 Sum_probs=36.9
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCCC
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 84 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~~ 84 (575)
.....+|||||||++|++||..|.+ |.+|+|||+-++.++.
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 3457899999999999999999999 9999999999887763
No 191
>PRK14694 putative mercuric reductase; Provisional
Probab=97.67 E-value=3e-05 Score=83.18 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=34.2
Q ss_pred CCCCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 43 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 43 ~~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
+.+..|||||||+|++|+++|.+|++ |++|+|+|++.
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 45668999999999999999999999 99999999975
No 192
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.67 E-value=3.6e-05 Score=82.63 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=32.4
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
.+||+||||+|++|+.+|.+|++ |++|+|+|++..
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~ 38 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYW 38 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 46999999999999999999999 999999999743
No 193
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.67 E-value=0.00052 Score=67.36 Aligned_cols=42 Identities=29% Similarity=0.331 Sum_probs=36.8
Q ss_pred CcccEEEECCCcchhHHHHhhcCCCeEEEEeccCCCCCCCCc
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNI 87 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~G~~VlvLE~G~~~~~~~~~ 87 (575)
..-++.|||||.+|+++|+.|+.-++|.|.|++...++..+.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~T 48 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHANT 48 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcccceEEEeccccccCccce
Confidence 356799999999999999999998899999999988765543
No 194
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.67 E-value=2.9e-05 Score=81.21 Aligned_cols=33 Identities=33% Similarity=0.631 Sum_probs=31.4
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.|||+|||+|++|+++|..|++ |.+|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 5999999999999999999999 99999999875
No 195
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.67 E-value=3.3e-05 Score=79.49 Aligned_cols=36 Identities=44% Similarity=0.731 Sum_probs=33.2
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 83 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~ 83 (575)
|||+|||+|++|+++|.+|++ |.+|+|||+.+..++
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 799999999999999999999 999999999876554
No 196
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.66 E-value=2.9e-05 Score=81.76 Aligned_cols=34 Identities=35% Similarity=0.573 Sum_probs=31.9
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
+..|||+|||+|++|+++|..|++ |.+|+|+|+.
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 347999999999999999999999 9999999996
No 197
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.66 E-value=4.9e-05 Score=80.82 Aligned_cols=33 Identities=48% Similarity=0.712 Sum_probs=27.1
Q ss_pred cEEEECCCcchhHHHHhhcC-C---CeEEEEeccCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-N---ASVLLLERGGSP 81 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G---~~VlvLE~G~~~ 81 (575)
||||||+|++|.++|..|++ + .+|+|||+....
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~ 37 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP 37 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence 79999999999999999999 6 899999998654
No 198
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.65 E-value=3.1e-05 Score=82.61 Aligned_cols=33 Identities=30% Similarity=0.478 Sum_probs=31.4
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
+||+||||+|++|+.+|.+|++ |++|+|+|++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 35 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPR 35 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCc
Confidence 6999999999999999999999 99999999953
No 199
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.60 E-value=4.4e-05 Score=83.54 Aligned_cols=36 Identities=33% Similarity=0.562 Sum_probs=32.8
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
.+.|||||||||+||+++|..|++ |++|+|+|++..
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~ 38 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF 38 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 346999999999999999999999 999999999753
No 200
>PLN02546 glutathione reductase
Probab=97.60 E-value=5.3e-05 Score=82.38 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=30.9
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEec
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLER 77 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~ 77 (575)
..+|||||||+|++|..+|.+|++ |+||+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 346999999999999999999999 999999996
No 201
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=4e-05 Score=76.58 Aligned_cols=34 Identities=47% Similarity=0.707 Sum_probs=30.2
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCe-EEEEeccC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGG 79 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~-VlvLE~G~ 79 (575)
+.|||||||||++|+++|..++. +++ ++|+|++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~ 37 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE 37 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence 47999999999999999999999 988 77777764
No 202
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.59 E-value=4.9e-05 Score=81.53 Aligned_cols=32 Identities=38% Similarity=0.622 Sum_probs=30.5
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
+|||||||||++|+.+|.+|++ |++|+|+|++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4999999999999999999999 9999999993
No 203
>PTZ00367 squalene epoxidase; Provisional
Probab=97.56 E-value=3.5e-05 Score=83.83 Aligned_cols=35 Identities=49% Similarity=0.620 Sum_probs=32.6
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
+..|||||||+|++|+++|..|++ |.+|+|+||..
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 347999999999999999999999 99999999975
No 204
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.56 E-value=4.8e-05 Score=81.63 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=32.3
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.+||+||||+|++|+.+|.+|++ |++|+|+|++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 46999999999999999999999 99999999976
No 205
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.56 E-value=5.6e-05 Score=81.03 Aligned_cols=33 Identities=39% Similarity=0.656 Sum_probs=31.2
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
..||+||||+|++|+.+|.+|++ |++|+|+|++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 46999999999999999999999 9999999994
No 206
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.55 E-value=5.7e-05 Score=83.36 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=30.9
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
+|||||||+|++|..+|.++++ |+||+|+|++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 7999999999999999999999 9999999975
No 207
>PLN02507 glutathione reductase
Probab=97.54 E-value=5e-05 Score=81.94 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=31.2
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEec
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLER 77 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~ 77 (575)
..+||+||||+|++|..+|.+|++ |+||+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 447999999999999999999999 999999996
No 208
>PLN02676 polyamine oxidase
Probab=97.53 E-value=0.00011 Score=78.95 Aligned_cols=39 Identities=33% Similarity=0.457 Sum_probs=35.0
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CC-eEEEEeccCCCCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSPYGN 84 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~-~VlvLE~G~~~~~~ 84 (575)
..+||||||+|++|+++|++|++ |. +|+|||+.+..++.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~ 65 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGR 65 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCc
Confidence 36899999999999999999999 97 69999999887653
No 209
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.52 E-value=6.1e-05 Score=80.98 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=31.3
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEec
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLER 77 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~ 77 (575)
..+||+||||+|++|+++|.+|++ |++|+|||+
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 347999999999999999999999 999999998
No 210
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00024 Score=72.31 Aligned_cols=55 Identities=22% Similarity=0.348 Sum_probs=40.1
Q ss_pred CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHH
Q 008163 223 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 287 (575)
Q Consensus 223 ~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~l 287 (575)
..+|++|+.+. |.+|++.+.+++..++.||... +|.. |+ ++.|||.+|.|-+.+|
T Consensus 136 st~nL~ire~~-V~dliv~~~~~~~~~~~gV~l~--dgt~--v~-----a~~VilTTGTFL~~~I 190 (679)
T KOG2311|consen 136 STPNLEIREGA-VADLIVEDPDDGHCVVSGVVLV--DGTV--VY-----AESVILTTGTFLRGQI 190 (679)
T ss_pred cCCcchhhhhh-hhheeeccCCCCceEEEEEEEe--cCcE--ec-----cceEEEeeccceeeEE
Confidence 34688888776 6666665554456679999888 6753 43 7999999999877654
No 211
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.50 E-value=7e-05 Score=78.42 Aligned_cols=33 Identities=36% Similarity=0.549 Sum_probs=30.8
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
||||||+|++|+++|+.|++ |++|+|||+.+..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~ 34 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPI 34 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 89999999999999999999 9999999998643
No 212
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.47 E-value=8e-05 Score=79.90 Aligned_cols=33 Identities=42% Similarity=0.660 Sum_probs=31.3
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
||+||||+|++|+++|.+|++ |++|+|+|++..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~ 34 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPL 34 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 899999999999999999999 999999999753
No 213
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.47 E-value=9.4e-05 Score=79.38 Aligned_cols=33 Identities=18% Similarity=0.415 Sum_probs=30.8
Q ss_pred CcccEEEECCCcchhHHHHhhcC--CCeEEEEecc
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERG 78 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~--G~~VlvLE~G 78 (575)
.+||+||||+|++|..+|.++++ |++|+|+|++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 46999999999999999999999 6999999985
No 214
>PLN02268 probable polyamine oxidase
Probab=97.46 E-value=8.6e-05 Score=79.00 Aligned_cols=37 Identities=38% Similarity=0.482 Sum_probs=34.3
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNP 85 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~~~ 85 (575)
+|||||+|++|+++|++|.+ |++|+|||+.++.++..
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri 39 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRV 39 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCcee
Confidence 79999999999999999999 99999999999887643
No 215
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.46 E-value=7.7e-05 Score=74.92 Aligned_cols=32 Identities=41% Similarity=0.577 Sum_probs=30.8
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
|||+|||+|++|+.+|..|++ |.+|+|+|++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 799999999999999999999 99999999985
No 216
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.45 E-value=0.00069 Score=61.00 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=25.5
Q ss_pred EEECCCcchhHHHHhhcC-C-----CeEEEEeccCC
Q 008163 51 IIIGGGTAGCPLAATLSQ-N-----ASVLLLERGGS 80 (575)
Q Consensus 51 IIVGsG~aG~~~A~~La~-G-----~~VlvLE~G~~ 80 (575)
+|||+|++|++++.+|.+ . .+|.|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 499999999999999876 3 58999999544
No 217
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.45 E-value=0.0035 Score=65.39 Aligned_cols=60 Identities=22% Similarity=0.500 Sum_probs=45.8
Q ss_pred hhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCc
Q 008163 219 LEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 282 (575)
Q Consensus 219 l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~ 282 (575)
....+.+||++..+++|+.|.++..+ ....++++++. .+|+..+|.+ ...+.|++..|.+
T Consensus 214 ~~~L~~~GV~F~~~t~V~di~~~~~~-~~~~~~~i~~~-~~g~~~~i~l--~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 214 IRYLKSQGVDFRFNTKVTDIDFDITG-DKKTATRIHIE-QDGKEETIDL--GPDDLVFVTNGSM 273 (500)
T ss_pred HHHHHHCCCEEECCCEEEEEEEEccC-CCeeEEEEEEE-cCCCeeEEEe--CCCCEEEEECCcc
Confidence 33667889999999999999998653 34578888887 4676666553 3789999999964
No 218
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.44 E-value=8.8e-05 Score=80.10 Aligned_cols=33 Identities=30% Similarity=0.544 Sum_probs=30.9
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
..||+||||+|++|+.+|.+|++ |++|+|+|++
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 35999999999999999999999 9999999974
No 219
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.43 E-value=9.1e-05 Score=77.54 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=32.1
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
.+||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4899999999999999999999 999999999964
No 220
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00015 Score=74.26 Aligned_cols=40 Identities=33% Similarity=0.365 Sum_probs=36.4
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 84 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~~ 84 (575)
....||||||+|.+||++|++|.+ |++|+|||..++.++.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR 45 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR 45 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence 558999999999999999999999 9999999998877653
No 221
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.41 E-value=0.00011 Score=77.08 Aligned_cols=33 Identities=48% Similarity=0.643 Sum_probs=30.7
Q ss_pred CcccEEEECCCcchhHHHHhhcC----CCeEEEEecc
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ----NASVLLLERG 78 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~----G~~VlvLE~G 78 (575)
..|||+|||+|++|+++|+.|++ |.+|+|+||.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 46999999999999999999975 9999999996
No 222
>PRK07233 hypothetical protein; Provisional
Probab=97.40 E-value=0.00011 Score=78.14 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=33.5
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 84 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~~ 84 (575)
+|||||+|++|+++|+.|++ |++|+|||+.+..++.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~ 37 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGL 37 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCc
Confidence 58999999999999999999 9999999999987764
No 223
>PLN02568 polyamine oxidase
Probab=97.40 E-value=0.00013 Score=79.01 Aligned_cols=41 Identities=27% Similarity=0.322 Sum_probs=36.0
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC-C-----CeEEEEeccCCCCCC
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ-N-----ASVLLLERGGSPYGN 84 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~-G-----~~VlvLE~G~~~~~~ 84 (575)
+++.+||||||+|++|+++|.+|++ | .+|+|||+....++.
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr 48 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGR 48 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCe
Confidence 3456899999999999999999997 7 899999999887653
No 224
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.39 E-value=0.00011 Score=78.60 Aligned_cols=35 Identities=37% Similarity=0.503 Sum_probs=32.3
Q ss_pred cEEEECCCcchhHHHHhhcC-C--CeEEEEeccCCCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPYG 83 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G--~~VlvLE~G~~~~~ 83 (575)
+|||||||++|+++|+.|++ | ++|+|||+.+..++
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG 39 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcc
Confidence 59999999999999999999 8 89999999887765
No 225
>PRK13748 putative mercuric reductase; Provisional
Probab=97.38 E-value=0.00012 Score=80.65 Aligned_cols=34 Identities=32% Similarity=0.413 Sum_probs=32.0
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.+|||||||+|++|+.+|.+|++ |++|+|+|++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT 131 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 46999999999999999999999 99999999973
No 226
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.37 E-value=0.0012 Score=64.86 Aligned_cols=35 Identities=37% Similarity=0.560 Sum_probs=32.5
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
...||+.|||+|.+|..+|+++++ |.||.|+|...
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f 53 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPF 53 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCC
Confidence 458999999999999999999999 99999999873
No 227
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.37 E-value=0.00052 Score=70.18 Aligned_cols=69 Identities=17% Similarity=0.308 Sum_probs=47.2
Q ss_pred eeEECCCCccccHHH---hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEcc
Q 008163 203 GTIFDQNGQRHTAAD---LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSA 279 (575)
Q Consensus 203 ~~~~~~~g~r~~~~~---~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAa 279 (575)
+.+.+.+|.-.+... ++..+++.|++++.+++|+.|..+++ ++++|... +| ++. ++.||+|+
T Consensus 125 g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~-----~~~~v~~~--~g---~~~-----a~~vV~a~ 189 (337)
T TIGR02352 125 AVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGE-----KVTAIVTP--SG---DVQ-----ADQVVLAA 189 (337)
T ss_pred EEEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCC-----EEEEEEcC--CC---EEE-----CCEEEEcC
Confidence 344344554443332 45567778999999999999998766 78787643 44 243 79999999
Q ss_pred CCcCcHHH
Q 008163 280 GALGSPQL 287 (575)
Q Consensus 280 G~~~sp~l 287 (575)
|+ ++++|
T Consensus 190 G~-~~~~l 196 (337)
T TIGR02352 190 GA-WAGEL 196 (337)
T ss_pred Ch-hhhhc
Confidence 97 55553
No 228
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.31 E-value=0.00015 Score=77.12 Aligned_cols=32 Identities=44% Similarity=0.773 Sum_probs=30.0
Q ss_pred ccEEEECCCcchhHHHHhhcC-----CCeEEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-----NASVLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-----G~~VlvLE~G~ 79 (575)
|||||||+|++|+++|+.|++ |.+|+|+|+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 799999999999999999996 89999999964
No 229
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.30 E-value=0.0011 Score=69.10 Aligned_cols=68 Identities=25% Similarity=0.245 Sum_probs=43.2
Q ss_pred eeEECCCCccccHHH---hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEcc
Q 008163 203 GTIFDQNGQRHTAAD---LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSA 279 (575)
Q Consensus 203 ~~~~~~~g~r~~~~~---~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAa 279 (575)
+.+++.+|.-.+... |...+++ |++++++++|++|..+++ + +.+...+|.. +. ++.||+|+
T Consensus 123 al~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~-----~---~~v~t~~g~~--~~-----a~~vV~a~ 186 (381)
T TIGR03197 123 GLFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGE-----G---WQLLDANGEV--IA-----ASVVVLAN 186 (381)
T ss_pred ceEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCC-----e---EEEEeCCCCE--EE-----cCEEEEcC
Confidence 344444554333322 4456677 999999999999987655 3 3334335642 33 79999999
Q ss_pred CCcCcHHH
Q 008163 280 GALGSPQL 287 (575)
Q Consensus 280 G~~~sp~l 287 (575)
|+ +++.+
T Consensus 187 G~-~~~~l 193 (381)
T TIGR03197 187 GA-QAGQL 193 (381)
T ss_pred Cc-ccccc
Confidence 96 45544
No 230
>PLN02576 protoporphyrinogen oxidase
Probab=97.26 E-value=0.00024 Score=77.05 Aligned_cols=39 Identities=31% Similarity=0.412 Sum_probs=35.0
Q ss_pred CcccEEEECCCcchhHHHHhhcC--CCeEEEEeccCCCCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYGN 84 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~--G~~VlvLE~G~~~~~~ 84 (575)
..+||||||+|++|+++|++|++ |.+|+|||+.+..++.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 35899999999999999999998 7999999999877653
No 231
>PRK10262 thioredoxin reductase; Provisional
Probab=97.26 E-value=0.00023 Score=72.47 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=32.1
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
..+.+||+|||+|++|+.+|..|++ |++|+++|+.
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 3568999999999999999999999 9999999965
No 232
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.25 E-value=0.00018 Score=75.31 Aligned_cols=33 Identities=33% Similarity=0.616 Sum_probs=31.4
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
+|||||||+|.+|+++|..|++ |++|+|||++.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5999999999999999999999 99999999984
No 233
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.00022 Score=74.24 Aligned_cols=36 Identities=31% Similarity=0.315 Sum_probs=33.6
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 84 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~~ 84 (575)
.|+|+|+|.||+++|++||+ |++|.|+|++++.+++
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk 38 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGK 38 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCce
Confidence 48999999999999999999 9999999999988764
No 234
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.22 E-value=0.00031 Score=77.92 Aligned_cols=37 Identities=35% Similarity=0.461 Sum_probs=33.8
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC--CCeEEEEeccCC
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGS 80 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~--G~~VlvLE~G~~ 80 (575)
+.+++||+|||+|++|+++|..|++ |.+|+|||+.+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 4568999999999999999999998 899999999854
No 235
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.19 E-value=0.00029 Score=73.06 Aligned_cols=33 Identities=36% Similarity=0.614 Sum_probs=30.4
Q ss_pred cEEEECCCcchhHHHHhhcC---CCeEEEEeccCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP 81 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~---G~~VlvLE~G~~~ 81 (575)
||||||+|++|+++|.+|++ |++|+|||+++..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~ 36 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTI 36 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 89999999999999999986 8999999998643
No 236
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.18 E-value=0.0024 Score=67.95 Aligned_cols=32 Identities=16% Similarity=0.494 Sum_probs=29.1
Q ss_pred cEEEECCCcchhHHHHhhcC---CCeEEEEeccCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ---NASVLLLERGGS 80 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~---G~~VlvLE~G~~ 80 (575)
.|||||+|++|+.+|.+|.+ +.+|+|+|+.+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 69999999999999999987 579999999864
No 237
>PRK14727 putative mercuric reductase; Provisional
Probab=97.17 E-value=0.00028 Score=75.91 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=33.3
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
..||+||||+|++|..+|.+|++ |.+|+|+|++...+
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~G 52 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIG 52 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcce
Confidence 36999999999999999999999 99999999985443
No 238
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.11 E-value=0.00032 Score=65.91 Aligned_cols=32 Identities=44% Similarity=0.733 Sum_probs=29.6
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
||||||+|++|+.+|.+|++ +.+|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 79999999999999999999 999999987653
No 239
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.10 E-value=0.00032 Score=75.41 Aligned_cols=32 Identities=41% Similarity=0.655 Sum_probs=30.6
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
+||+||||+|++|..+|.+|++ |++|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 5999999999999999999999 9999999974
No 240
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.09 E-value=0.00036 Score=72.21 Aligned_cols=34 Identities=29% Similarity=0.284 Sum_probs=31.4
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
-||+|||+|.+|+.+|+.||+ |++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 489999999999999999999 9999999987653
No 241
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.08 E-value=0.0004 Score=74.49 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=33.2
Q ss_pred ccEEEECCCcchhHHHHhhcC-----CCeEEEEeccCCCCCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGSPYGN 84 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-----G~~VlvLE~G~~~~~~ 84 (575)
.||||||+|++|+++|++|++ |.+|+|+|+.+..++.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~ 44 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGK 44 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcce
Confidence 689999999999999999987 5899999999877653
No 242
>PRK07846 mycothione reductase; Reviewed
Probab=97.08 E-value=0.00048 Score=73.52 Aligned_cols=33 Identities=30% Similarity=0.573 Sum_probs=28.4
Q ss_pred cccEEEECCCcchhHHHHhhcCCCeEEEEeccCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQNASVLLLERGGS 80 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~G~~VlvLE~G~~ 80 (575)
+||+||||+|++|..+|.++ .|+||+|+|++..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~-~G~~V~lie~~~~ 33 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF-ADKRIAIVEKGTF 33 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 49999999999999888763 3999999998753
No 243
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.07 E-value=0.011 Score=61.94 Aligned_cols=35 Identities=31% Similarity=0.361 Sum_probs=30.6
Q ss_pred cccEEEECCCcchhHHHHhhcC-CC--eEEEEeccCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGGSP 81 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~--~VlvLE~G~~~ 81 (575)
..+|||||+|++|+.+|..|.+ |. +|+|+++.+..
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 4579999999999999999998 64 89999988653
No 244
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.03 E-value=0.00056 Score=73.04 Aligned_cols=32 Identities=28% Similarity=0.558 Sum_probs=27.2
Q ss_pred cccEEEECCCcchhHHHHhhcCCCeEEEEeccC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQNASVLLLERGG 79 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~G~~VlvLE~G~ 79 (575)
+||+||||+|++|..+|.++ .|+||+|+|++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~-~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF-ADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC
Confidence 59999999999998886553 299999999863
No 245
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.02 E-value=0.00044 Score=74.21 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=32.1
Q ss_pred cEEEECCCcchhHHHHhhcC-C------CeEEEEeccCCCCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-N------ASVLLLERGGSPYGN 84 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G------~~VlvLE~G~~~~~~ 84 (575)
+|||||+|++|+++|++|++ | .+|+|||+.+..++.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr 45 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGK 45 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccce
Confidence 59999999999999999997 4 689999999877653
No 246
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.01 E-value=0.00058 Score=78.29 Aligned_cols=38 Identities=29% Similarity=0.416 Sum_probs=34.3
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 83 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~ 83 (575)
..+||+|||||+||+++|+.|++ |++|+|+|+.+..++
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG 574 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGG 574 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCc
Confidence 46899999999999999999999 999999999876543
No 247
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.00 E-value=0.00049 Score=67.07 Aligned_cols=34 Identities=38% Similarity=0.613 Sum_probs=32.3
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
+|||+|||+|.+|+++|++|++ |+++.|+-+|..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs 36 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS 36 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 6999999999999999999999 999999999964
No 248
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=96.99 E-value=0.00051 Score=73.51 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=32.4
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 83 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~ 83 (575)
+|+|||+|++|+++|++|++ |++|+|+|+.+..++
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 48999999999999999999 999999999987665
No 249
>PRK12831 putative oxidoreductase; Provisional
Probab=96.95 E-value=0.0008 Score=71.98 Aligned_cols=38 Identities=26% Similarity=0.299 Sum_probs=34.1
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
....||+|||+|++|+++|..|++ |++|+|+|+....+
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~G 176 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPG 176 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 456899999999999999999999 99999999976543
No 250
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.95 E-value=0.0044 Score=66.14 Aligned_cols=32 Identities=34% Similarity=0.490 Sum_probs=28.9
Q ss_pred cEEEECCCcchhHHHHhhcC-C--CeEEEEeccCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGS 80 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G--~~VlvLE~G~~ 80 (575)
+|||||+|++|+.+|..|++ + .+|+|+|+.+.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~ 36 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI 36 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence 59999999999999999998 5 58999999864
No 251
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.95 E-value=0.00061 Score=74.94 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=32.6
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
...++|+|||+|++|+++|..|++ |.+|.|+||..
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456999999999999999999999 99999999975
No 252
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.93 E-value=0.00091 Score=74.94 Aligned_cols=40 Identities=30% Similarity=0.427 Sum_probs=35.8
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 84 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~~ 84 (575)
....+|||||+|++|+++|+.|++ |++|+|+|+....++.
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence 346899999999999999999999 9999999998877653
No 253
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.88 E-value=0.00059 Score=71.23 Aligned_cols=42 Identities=36% Similarity=0.393 Sum_probs=32.3
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCCCC
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNP 85 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~~~ 85 (575)
|+++|||||+|.|..-+++|..|+. |+|||.||+++..++..
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~ 43 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEW 43 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCch
Confidence 4678999999999999999999999 99999999999987643
No 254
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.83 E-value=0.00072 Score=69.21 Aligned_cols=39 Identities=33% Similarity=0.444 Sum_probs=35.1
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 84 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~~ 84 (575)
-.=+++|||+|++|+.+|+.||+ |.+|.|+||.+..++.
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGr 162 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence 34679999999999999999999 9999999999887653
No 255
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.82 E-value=0.00085 Score=70.53 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=30.6
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
=+|+|||+|++|+++|..|++ |.+|.|+||.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 469999999999999999999 999999999754
No 256
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.77 E-value=0.00099 Score=69.62 Aligned_cols=35 Identities=37% Similarity=0.489 Sum_probs=32.1
Q ss_pred cEEEECCCcchhHHHHhhcC-C--CeEEEEeccCCCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPYG 83 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G--~~VlvLE~G~~~~~ 83 (575)
.++|||+|++|+++|++|.+ + ..|.|+|++++.++
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG 39 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCc
Confidence 38999999999999999999 7 89999999987765
No 257
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.77 E-value=0.0013 Score=70.53 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=34.2
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
...++|+|||+|++|+++|..|++ |++|+|+|+.+..+
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~G 179 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIG 179 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 346899999999999999999999 99999999987654
No 258
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0012 Score=64.47 Aligned_cols=37 Identities=32% Similarity=0.423 Sum_probs=33.2
Q ss_pred CCCCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 43 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 43 ~~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.....||.||||+|.+|+++|.++|. |.+|.+||-=.
T Consensus 15 ~~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~ 52 (503)
T KOG4716|consen 15 FSSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVK 52 (503)
T ss_pred cccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecc
Confidence 44568999999999999999999999 99999998653
No 259
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.75 E-value=0.0014 Score=69.86 Aligned_cols=38 Identities=29% Similarity=0.357 Sum_probs=34.0
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
...+||+|||+|++|+.+|..|++ |++|+|+|+.+..+
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~G 169 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPG 169 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 456899999999999999999999 99999999986543
No 260
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.75 E-value=0.0011 Score=67.01 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=30.5
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
+-+|||||+|.+|+++|..|.+ |.+|+|+|+..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 4579999999999999999999 99999999953
No 261
>PLN02529 lysine-specific histone demethylase 1
Probab=96.74 E-value=0.0012 Score=73.59 Aligned_cols=39 Identities=33% Similarity=0.395 Sum_probs=35.3
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 83 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~ 83 (575)
....||||||+|++|+++|..|++ |++|+|||+.+..++
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG 197 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGG 197 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcC
Confidence 346899999999999999999999 999999999887665
No 262
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.72 E-value=0.0011 Score=69.17 Aligned_cols=33 Identities=36% Similarity=0.462 Sum_probs=30.7
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
||+|||+|.+|+.+|+.||+ |.+|+|+|+.+..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 79999999999999999999 9999999987653
No 263
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.71 E-value=0.0013 Score=70.46 Aligned_cols=33 Identities=33% Similarity=0.532 Sum_probs=30.7
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
++||||+|++|+++|.+|++ |++|+|+|++...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~G 35 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLG 35 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 69999999999999999999 9999999998654
No 264
>PLN02612 phytoene desaturase
Probab=96.67 E-value=0.0016 Score=71.46 Aligned_cols=38 Identities=29% Similarity=0.334 Sum_probs=34.2
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 83 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~ 83 (575)
...+|+|||+|.+|+++|++|++ |++|+|+|+....++
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG 130 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGG 130 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCC
Confidence 35899999999999999999999 999999999876554
No 265
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.64 E-value=0.0014 Score=70.36 Aligned_cols=97 Identities=14% Similarity=0.222 Sum_probs=56.6
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHhhcCCCce
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHNIT 297 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~Sg~~gi~ 297 (575)
+.+..++.|.+|+++++|++|..++++++..++++|.+.+.++ ..++. ++.||+|+......+||-..-. ..+
T Consensus 225 l~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~-~~~~~-----aD~VVlA~p~~~~~~Ll~~~~~-~~~ 297 (474)
T TIGR02732 225 ILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEG-KKVIK-----ADAYVAACDVPGIKRLLPQEWR-QFE 297 (474)
T ss_pred HHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCc-ceEEE-----CCEEEECCChHHHHhhCChhhh-cCH
Confidence 4445556899999999999999865210111378888853222 12343 7999999998777776532100 000
Q ss_pred eeecCCccCCCCCCCCCceEEeeCCCcc
Q 008163 298 VVLDQPLVGQGMSDNPMNAIFVPSPVPV 325 (575)
Q Consensus 298 ~~~~~p~vG~~l~dh~~~~~~~~~~~~~ 325 (575)
....+ +++...|...+.+.++.++
T Consensus 298 ---~~~~l-~~l~~~pi~~v~l~~~~~v 321 (474)
T TIGR02732 298 ---EFDNI-YKLDAVPVATVQLRYDGWV 321 (474)
T ss_pred ---HHhhH-hcCCCCCeEEEEEEecccc
Confidence 00011 2344566667777776554
No 266
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.57 E-value=0.0022 Score=50.43 Aligned_cols=33 Identities=36% Similarity=0.608 Sum_probs=30.8
Q ss_pred EEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 50 YIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
++|||+|..|+-+|..|++ |.+|.|+|+.+...
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 7999999999999999999 99999999998753
No 267
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.56 E-value=0.0017 Score=75.08 Aligned_cols=38 Identities=21% Similarity=0.144 Sum_probs=34.2
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 83 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~ 83 (575)
...+|+|||||+||+++|+.|++ |++|+|+|+.+..++
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG 343 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGG 343 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCc
Confidence 36889999999999999999999 999999999876554
No 268
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.53 E-value=0.0018 Score=68.34 Aligned_cols=32 Identities=41% Similarity=0.594 Sum_probs=29.4
Q ss_pred cEEEECCCcchhHHHHhhcC-C-CeEEEEeccCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGS 80 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~~ 80 (575)
.|+|||+|++|+++|..|++ | .+|+|+||.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 58999999999999999999 8 59999999754
No 269
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.50 E-value=0.0027 Score=67.72 Aligned_cols=39 Identities=31% Similarity=0.465 Sum_probs=33.8
Q ss_pred CCcccEEEECCCcchhHHHHhhcC---CCeEEEEeccCCCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSPYG 83 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~---G~~VlvLE~G~~~~~ 83 (575)
....+|+|||||++|+.+|..|++ |++|.|+|+.+..++
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG 65 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG 65 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc
Confidence 345789999999999999999974 899999999986653
No 270
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.48 E-value=0.0023 Score=74.65 Aligned_cols=38 Identities=29% Similarity=0.257 Sum_probs=34.2
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 83 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~ 83 (575)
...+|+|||||++|+++|..|++ |++|+|+|+....++
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG 467 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGG 467 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcc
Confidence 35799999999999999999999 999999999876543
No 271
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.46 E-value=0.0023 Score=71.65 Aligned_cols=37 Identities=30% Similarity=0.320 Sum_probs=33.6
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
...+|+|||||++|+++|..|++ |++|+|+|+....+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~G 363 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIG 363 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 46799999999999999999999 99999999987654
No 272
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.46 E-value=0.0026 Score=68.09 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=34.0
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
....+|+|||+|++|+.+|..|++ |++|+|+|+.+..+
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~g 176 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAG 176 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC
Confidence 446899999999999999999999 99999999987643
No 273
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.42 E-value=0.0027 Score=72.64 Aligned_cols=39 Identities=31% Similarity=0.361 Sum_probs=34.5
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 83 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~ 83 (575)
....+|+|||||++|+++|+.|++ |++|+|+|+.+..++
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG 576 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGG 576 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCc
Confidence 345799999999999999999999 999999999876543
No 274
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.41 E-value=0.025 Score=58.82 Aligned_cols=35 Identities=29% Similarity=0.382 Sum_probs=29.4
Q ss_pred ccEEEECCCcchhHHHHhhcC---C-CeEEEEeccCCCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ---N-ASVLLLERGGSPY 82 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~---G-~~VlvLE~G~~~~ 82 (575)
++|+|||+|++|.++|.+|.+ . .+|.|+|.-...+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G 40 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG 40 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC
Confidence 789999999999999999987 2 3499999886543
No 275
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.41 E-value=0.034 Score=57.51 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=32.7
Q ss_pred ccEEEECCCcchhHHHHhhcC-C--CeEEEEeccCCCCCCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPYGNP 85 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G--~~VlvLE~G~~~~~~~ 85 (575)
-.+||||||.+|+.+|.+|+. - .+|+|+|+.....-.+
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~p 44 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTP 44 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccch
Confidence 459999999999999999999 5 8899999998765433
No 276
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.41 E-value=0.024 Score=59.11 Aligned_cols=33 Identities=30% Similarity=0.563 Sum_probs=30.1
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
-+++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~ 175 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAAS 175 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCc
Confidence 469999999999999999999 999999998753
No 277
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.40 E-value=0.0029 Score=72.09 Aligned_cols=38 Identities=24% Similarity=0.241 Sum_probs=33.5
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
....||+|||||++|+++|..|++ |++|+|+|+.+..+
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~G 467 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIG 467 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 346899999999999999999999 99999999965443
No 278
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.40 E-value=0.0035 Score=64.70 Aligned_cols=37 Identities=27% Similarity=0.281 Sum_probs=33.2
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
...+|+|||+|++|+.+|..|++ |++|+|+|+.+...
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g 54 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPG 54 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 34689999999999999999999 99999999987653
No 279
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.37 E-value=0.0033 Score=64.67 Aligned_cols=41 Identities=32% Similarity=0.408 Sum_probs=35.3
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC-C-CeEEEEeccCCCCCC
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPYGN 84 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~~~~~~ 84 (575)
......+||||+|++|+++|.+|-+ | ..|+|+|+.++.++.
T Consensus 18 ~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 18 ARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR 60 (498)
T ss_pred ccCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence 3445689999999999999999997 4 789999999988763
No 280
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.33 E-value=0.024 Score=60.82 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=30.0
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
-+++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 204 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR 204 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence 479999999999999999999 999999998853
No 281
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.20 E-value=0.0044 Score=69.21 Aligned_cols=37 Identities=27% Similarity=0.270 Sum_probs=33.7
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
...+|+|||+|++|+++|..|++ |++|+|+|+....+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~G 229 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAG 229 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 45799999999999999999999 99999999987654
No 282
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.17 E-value=0.039 Score=59.23 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=35.4
Q ss_pred CCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHH
Q 008163 224 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 287 (575)
Q Consensus 224 ~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~l 287 (575)
+.|++|+++++|+++..+++ .+ .+.+...+|+..++. ++.||+|+|..-+..+
T Consensus 225 ~~gV~i~~~~~v~~i~~~~~-----~~-~v~~~~~~g~~~~i~-----~D~vi~a~G~~pn~~~ 277 (466)
T PRK07818 225 KLGVKILTGTKVESIDDNGS-----KV-TVTVSKKDGKAQELE-----ADKVLQAIGFAPRVEG 277 (466)
T ss_pred HCCCEEEECCEEEEEEEeCC-----eE-EEEEEecCCCeEEEE-----eCEEEECcCcccCCCC
Confidence 45899999999999975433 32 344432356544554 7999999996555443
No 283
>PLN03000 amine oxidase
Probab=96.16 E-value=0.0042 Score=69.87 Aligned_cols=39 Identities=31% Similarity=0.414 Sum_probs=35.5
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 84 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~~ 84 (575)
...||+|||+|++|+.+|..|++ |++|+|+|+....++.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGR 222 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGR 222 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCC
Confidence 46899999999999999999999 9999999999887653
No 284
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.13 E-value=0.0046 Score=62.34 Aligned_cols=35 Identities=49% Similarity=0.841 Sum_probs=31.1
Q ss_pred CcccEEEECCCcchhHHHHhhcC-----CCeEEEEeccCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGS 80 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-----G~~VlvLE~G~~ 80 (575)
..|||||||||+.|.+.|..|.. .+||+|||.+..
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 37999999999999999999976 379999999954
No 285
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=96.11 E-value=0.047 Score=58.77 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=29.6
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
-.++|||+|.+|+-+|..|++ |.+|.|+|+++.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 379999999999999999999 999999998853
No 286
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.04 E-value=0.0069 Score=64.91 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=33.5
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
...+|+|||+|++|+.+|..|++ |++|+|+|+.+..+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~g 177 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIG 177 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 46899999999999999999999 99999999987643
No 287
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.01 E-value=0.066 Score=58.27 Aligned_cols=56 Identities=20% Similarity=0.292 Sum_probs=43.2
Q ss_pred CCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEeeecCCCcEEEEccCCcCcHHHHHh
Q 008163 225 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 290 (575)
Q Consensus 225 ~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~-~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~ 290 (575)
.|+++++++.|+++..+++ ++++|.+.+. +|+..++. ++.|++|.|..-++.++..
T Consensus 400 ~gI~i~~~~~v~~i~~~~g-----~v~~v~~~~~~~g~~~~i~-----~D~v~~~~G~~p~~~~l~~ 456 (517)
T PRK15317 400 PNVTIITNAQTTEVTGDGD-----KVTGLTYKDRTTGEEHHLE-----LEGVFVQIGLVPNTEWLKG 456 (517)
T ss_pred CCcEEEECcEEEEEEcCCC-----cEEEEEEEECCCCcEEEEE-----cCEEEEeECCccCchHHhh
Confidence 5899999999999986554 8888888753 45555564 7999999998777776643
No 288
>PLN02976 amine oxidase
Probab=95.98 E-value=0.0059 Score=71.36 Aligned_cols=39 Identities=33% Similarity=0.410 Sum_probs=34.8
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 83 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~ 83 (575)
...+||+|||+|++|+.+|+.|++ |++|+|||+....++
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGG 730 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGG 730 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCC
Confidence 345899999999999999999999 999999999876654
No 289
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.97 E-value=0.065 Score=52.42 Aligned_cols=42 Identities=26% Similarity=0.519 Sum_probs=34.2
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC--C-CeEEEEeccCCCCCCC
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ--N-ASVLLLERGGSPYGNP 85 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~--G-~~VlvLE~G~~~~~~~ 85 (575)
..++|.|+|||+|.+|+.+|.++.. | -+|.|||-..+..-.+
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQP 80 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQP 80 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCc
Confidence 3568999999999999999999988 4 5899999776544333
No 290
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.91 E-value=0.0059 Score=69.21 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=32.3
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
.....|+|||+|+||+++|+.|+. |++|+|+|+...
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i 417 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKI 417 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccc
Confidence 346789999999999999999999 999999998643
No 291
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=95.91 E-value=0.059 Score=57.75 Aligned_cols=33 Identities=30% Similarity=0.632 Sum_probs=28.8
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
-+++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 204 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ 204 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 369999999999999999988 999999998753
No 292
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.88 E-value=0.0083 Score=66.95 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=33.9
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
...+|+|||+|++|+++|..|++ |++|+|+|+.+..+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G 346 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG 346 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 46889999999999999999999 99999999998654
No 293
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.84 E-value=0.055 Score=57.24 Aligned_cols=34 Identities=29% Similarity=0.571 Sum_probs=31.1
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
-.++|||+|+.|+-.|.-++. |.+|.|||+++..
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i 208 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 349999999999999999999 9999999999754
No 294
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.83 E-value=0.083 Score=57.46 Aligned_cols=55 Identities=15% Similarity=0.287 Sum_probs=41.2
Q ss_pred CCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEeeecCCCcEEEEccCCcCcHHHHH
Q 008163 225 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 289 (575)
Q Consensus 225 ~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~-~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl 289 (575)
.|+++++++.|+++.-+++ ++++|.+.+. +|+..++. ++.||+|.|..-++.+|.
T Consensus 401 ~gV~i~~~~~v~~i~~~~~-----~v~~v~~~~~~~~~~~~i~-----~D~vi~a~G~~Pn~~~l~ 456 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGDGD-----KVTGIRYQDRNSGEEKQLD-----LDGVFVQIGLVPNTEWLK 456 (515)
T ss_pred CCCEEEECCeeEEEEcCCC-----EEEEEEEEECCCCcEEEEE-----cCEEEEEeCCcCCchHHh
Confidence 4899999999999976545 7888888753 34444554 799999999776666653
No 295
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.82 E-value=0.048 Score=55.32 Aligned_cols=38 Identities=34% Similarity=0.307 Sum_probs=34.3
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC--CCeEEEEeccCCC
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSP 81 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~--G~~VlvLE~G~~~ 81 (575)
+++.+|+|.||-|+.-+.+|..|.+ +.+++.|||-+..
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 5668999999999999999999999 6899999999754
No 296
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=95.81 E-value=0.083 Score=56.87 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=27.4
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 216 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALP 216 (475)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 68999999999999988888 89999998875
No 297
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.79 E-value=0.0099 Score=64.01 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=32.8
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
...+|+|||+|++|+.+|..|++ |++|+|+|+.+..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC 178 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 34799999999999999999999 9999999998754
No 298
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.76 E-value=0.0065 Score=69.17 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=29.6
Q ss_pred cEEEECCCcchhHHHHhhcC---CCeEEEEeccCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ---NASVLLLERGGS 80 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~---G~~VlvLE~G~~ 80 (575)
+|+|||+|++|+++|..|++ |++|+|+||.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 69999999999999999998 689999999875
No 299
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.72 E-value=0.047 Score=62.40 Aligned_cols=32 Identities=16% Similarity=0.361 Sum_probs=27.3
Q ss_pred EEEECCCcchhHHHHhhcC----CCeEEEEeccCCC
Q 008163 50 YIIIGGGTAGCPLAATLSQ----NASVLLLERGGSP 81 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~----G~~VlvLE~G~~~ 81 (575)
+||||+|++|+.+|.+|.+ +.+|+|+|+.+..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 5899999999999988765 4699999988653
No 300
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.68 E-value=0.013 Score=61.92 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=32.5
Q ss_pred cccEEEECCCcchhHHHHhhc-C-CCeEEEEeccCCCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLS-Q-NASVLLLERGGSPYG 83 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La-~-G~~VlvLE~G~~~~~ 83 (575)
..-|+|||||++|+.+|.+|+ + |++|.|+||.+.+++
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgG 77 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG 77 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence 457999999999999999865 5 999999999987765
No 301
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=95.56 E-value=0.012 Score=59.65 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=32.6
Q ss_pred CcccEEEECCCcchhHHHHhhcC-C--CeEEEEeccCCCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPYG 83 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G--~~VlvLE~G~~~~~ 83 (575)
..-+|+|||+|++|+++|+.|++ + ..|.|.|++++.++
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 35789999999999999999999 5 45778999987664
No 302
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.01 Score=59.70 Aligned_cols=43 Identities=30% Similarity=0.457 Sum_probs=38.5
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCCCCC
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPN 86 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~~~~ 86 (575)
|+++|||||+|.|..=|+++..|+- |.+||.+||++..++...
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sa 44 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESA 44 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccc
Confidence 4567999999999999999999999 999999999999876544
No 303
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.52 E-value=0.11 Score=55.79 Aligned_cols=33 Identities=30% Similarity=0.591 Sum_probs=30.0
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 200 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR 200 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence 479999999999999999999 999999998854
No 304
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.51 E-value=0.069 Score=61.30 Aligned_cols=57 Identities=14% Similarity=0.171 Sum_probs=40.6
Q ss_pred CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHhhc
Q 008163 223 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 292 (575)
Q Consensus 223 ~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~Sg 292 (575)
++.|+++++++.|++|..++.+ .+..|.+. +|+. +. ++.||+|+|.--+..|+..+|
T Consensus 198 ~~~GV~v~~~~~v~~I~~~~~~----~~~~v~~~--dG~~--i~-----~D~Vv~A~G~rPn~~L~~~~G 254 (847)
T PRK14989 198 ESMGVRVHTSKNTLEIVQEGVE----ARKTMRFA--DGSE--LE-----VDFIVFSTGIRPQDKLATQCG 254 (847)
T ss_pred HHCCCEEEcCCeEEEEEecCCC----ceEEEEEC--CCCE--EE-----cCEEEECCCcccCchHHhhcC
Confidence 3458999999999999764432 44556554 5653 43 799999999877777766666
No 305
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.51 E-value=0.091 Score=56.38 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=27.6
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 206 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALPR 206 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 68999999999999988888 889999988753
No 306
>PRK10262 thioredoxin reductase; Provisional
Probab=95.50 E-value=0.16 Score=51.47 Aligned_cols=32 Identities=31% Similarity=0.437 Sum_probs=29.4
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
-.++|||+|..|+-+|..|++ +.+|.++++.+
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 379999999999999999999 99999999874
No 307
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=95.48 E-value=0.025 Score=59.23 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=31.3
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
..||.+|||+|.+|+-+|..|+| |.+|.++-+-..
T Consensus 54 ~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~p 89 (642)
T KOG2403|consen 54 HTYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFP 89 (642)
T ss_pred eeceeEEEeccchhhhhhhhhhhcCceEEEEecccc
Confidence 35999999999999999999999 999999877643
No 308
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.45 E-value=0.085 Score=56.56 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=28.8
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 209 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDR 209 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 368999999999999999999 999999998753
No 309
>PRK06116 glutathione reductase; Validated
Probab=95.42 E-value=0.1 Score=55.70 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=27.3
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
-.++|||+|..|+-+|..|++ |.+|.++++++
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~ 200 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD 200 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 368899999999999988888 88899998774
No 310
>PRK12831 putative oxidoreductase; Provisional
Probab=95.41 E-value=0.082 Score=56.64 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=28.8
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
=.|+|||+|..|+-+|..|.. |.+|.|+++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 379999999999999999999 99999998763
No 311
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.40 E-value=0.098 Score=55.82 Aligned_cols=31 Identities=32% Similarity=0.406 Sum_probs=28.8
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.|+|||+|..|+-+|..|.+ |.+|.|+++..
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 69999999999999999999 99999998773
No 312
>PRK06370 mercuric reductase; Validated
Probab=95.35 E-value=0.12 Score=55.47 Aligned_cols=33 Identities=33% Similarity=0.595 Sum_probs=29.1
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 205 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR 205 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 368999999999999999999 999999998753
No 313
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.35 E-value=0.017 Score=63.57 Aligned_cols=37 Identities=30% Similarity=0.375 Sum_probs=33.2
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
..-+|+|||+|++|+++|..|++ |++|+|+|+.+..+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~G 173 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLG 173 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 45689999999999999999999 99999999987654
No 314
>PRK07846 mycothione reductase; Reviewed
Probab=95.34 E-value=0.098 Score=55.87 Aligned_cols=33 Identities=27% Similarity=0.519 Sum_probs=30.1
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ 200 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR 200 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 479999999999999999999 999999998853
No 315
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=95.32 E-value=0.1 Score=55.77 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=29.7
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
=.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 200 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHER 200 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 369999999999999999999 999999998854
No 316
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.26 E-value=0.14 Score=55.00 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=26.9
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
=.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~ 207 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD 207 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 358889999999888888888 88898888864
No 317
>PRK13984 putative oxidoreductase; Provisional
Probab=95.23 E-value=0.018 Score=63.98 Aligned_cols=38 Identities=26% Similarity=0.260 Sum_probs=34.2
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
....+|+|||+|++|+.+|..|++ |++|+|+|+.....
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g 319 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG 319 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 456889999999999999999999 99999999987654
No 318
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.21 E-value=0.16 Score=54.67 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=28.5
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 68999999999999999999 999999998853
No 319
>PLN02507 glutathione reductase
Probab=95.20 E-value=0.13 Score=55.63 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=26.7
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 236 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKE 236 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEecC
Confidence 68899999999988888888 88899998774
No 320
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=95.13 E-value=0.15 Score=54.49 Aligned_cols=31 Identities=29% Similarity=0.499 Sum_probs=26.4
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 199 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGE 199 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 58888999999888888888 88898988774
No 321
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=95.09 E-value=0.18 Score=53.76 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=29.3
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
-.++|||+|..|+-+|..|.+ |.+|.++|+++
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 479999999999999999999 99999999875
No 322
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=95.09 E-value=0.26 Score=49.15 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=29.1
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
-.++|||+|..|+-+|..|++ +.+|.++++++
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 479999999999999999999 99999998863
No 323
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=94.82 E-value=0.12 Score=59.07 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=29.5
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
-.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~ 173 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP 173 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC
Confidence 369999999999999999999 99999999874
No 324
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=94.75 E-value=0.21 Score=53.56 Aligned_cols=32 Identities=22% Similarity=0.502 Sum_probs=27.0
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 211 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR 211 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 58899999999988888888 888999887753
No 325
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.016 Score=57.09 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=47.7
Q ss_pred cCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEeeecCCCcEEEEccCCcCcHHHHHhh
Q 008163 222 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 291 (575)
Q Consensus 222 ~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~-~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~S 291 (575)
+.-.|++|++|+.-++|.=|++ +|+|+++++. .|+.+.+. -..|.+--|-+-++.+|.-+
T Consensus 400 ~sl~Nv~ii~na~Ttei~Gdg~-----kV~Gl~Y~dr~sge~~~l~-----LeGvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 400 RSLPNVTIITNAQTTEVKGDGD-----KVTGLEYRDRVSGEEHHLE-----LEGVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred hcCCCcEEEecceeeEEecCCc-----eecceEEEeccCCceeEEE-----eeeeEEEEecccChhHhhch
Confidence 3457999999999999987777 9999999974 46666664 47788888888888877655
No 326
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=94.65 E-value=0.26 Score=52.20 Aligned_cols=33 Identities=33% Similarity=0.578 Sum_probs=29.8
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
-.|+|||+|..|+-+|..|++ |.+|.++++++.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 171 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER 171 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 379999999999999999999 999999998753
No 327
>PRK14727 putative mercuric reductase; Provisional
Probab=94.64 E-value=0.16 Score=54.71 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=26.3
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 58999999999999999888 8999999864
No 328
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=94.54 E-value=0.037 Score=55.43 Aligned_cols=37 Identities=35% Similarity=0.462 Sum_probs=32.1
Q ss_pred cccEEEECCCcchhHHHHhhcC---CCeEEEEeccCCCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSPYG 83 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~---G~~VlvLE~G~~~~~ 83 (575)
+.-|+|||||+||..+|.+|-+ +.+|.|.|+-+.+.+
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG 59 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG 59 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence 3479999999999999999766 699999999987653
No 329
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=94.53 E-value=0.025 Score=63.63 Aligned_cols=39 Identities=31% Similarity=0.364 Sum_probs=35.4
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 83 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~ 83 (575)
..-..|.|||||++|+.+|..|-+ |+.|+|.||.++.++
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence 345789999999999999999999 999999999988765
No 330
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.47 E-value=0.038 Score=55.66 Aligned_cols=40 Identities=35% Similarity=0.424 Sum_probs=36.6
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 84 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~~ 84 (575)
..+|||||||.|..-+++|...++ |.+||-||+..+++++
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~ 46 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGN 46 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCc
Confidence 457999999999999999999999 9999999999988764
No 331
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=94.45 E-value=0.21 Score=53.45 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=29.7
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 203 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK 203 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 479999999999999999999 999999998753
No 332
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=94.37 E-value=0.042 Score=58.23 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=33.0
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
....+|||||+|.+|+.+|.+|.. +.+|+|+|+.+...
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~ 46 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML 46 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc
Confidence 345789999999999999999987 89999999887643
No 333
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.21 E-value=0.23 Score=52.94 Aligned_cols=31 Identities=29% Similarity=0.528 Sum_probs=25.1
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~ 191 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAAS 191 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 57888888888888888888 88888888764
No 334
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=0.065 Score=53.51 Aligned_cols=40 Identities=30% Similarity=0.399 Sum_probs=36.5
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCCCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPN 86 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~~~~ 86 (575)
.|||||+|.|..=|+.+..|+- |.+||.+|+++..+....
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~a 46 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSA 46 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcccc
Confidence 6999999999999999999998 999999999998876443
No 335
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=93.96 E-value=0.043 Score=58.09 Aligned_cols=37 Identities=32% Similarity=0.372 Sum_probs=33.9
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 83 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~ 83 (575)
.-.|.|||||++|+.+|..|+. |++|++.|+-+..++
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GG 160 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG 160 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCce
Confidence 3789999999999999999999 999999999887664
No 336
>PTZ00058 glutathione reductase; Provisional
Probab=93.90 E-value=0.42 Score=52.35 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=29.2
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
=.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 369999999999999999999 999999998753
No 337
>PRK14694 putative mercuric reductase; Provisional
Probab=93.87 E-value=0.35 Score=51.95 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=25.3
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
.++|||+|..|+-+|..|++ |.+|.|++++
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 68888999888888888888 8888888764
No 338
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=93.67 E-value=0.3 Score=52.26 Aligned_cols=32 Identities=34% Similarity=0.514 Sum_probs=28.4
Q ss_pred ccEEEECCCcchhHHHHhhcC-CC-eEEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~-~VlvLE~G~ 79 (575)
=.|+|||+|..|+-+|..|++ |. +|.++++..
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 479999999999999999998 87 899998753
No 339
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=93.65 E-value=0.44 Score=51.32 Aligned_cols=51 Identities=18% Similarity=0.335 Sum_probs=34.4
Q ss_pred CCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHH
Q 008163 224 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 288 (575)
Q Consensus 224 ~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lL 288 (575)
+.|+++++++.|++|..+++ ....|.+. +|+ ++. ++.||+|+|.--...+|
T Consensus 243 ~~GI~i~~~~~v~~i~~~~~-----~~~~v~~~--~g~--~i~-----~D~vl~a~G~~Pn~~~l 293 (486)
T TIGR01423 243 ANGINIMTNENPAKVTLNAD-----GSKHVTFE--SGK--TLD-----VDVVMMAIGRVPRTQTL 293 (486)
T ss_pred HcCCEEEcCCEEEEEEEcCC-----ceEEEEEc--CCC--EEE-----cCEEEEeeCCCcCcccC
Confidence 45799999999999976544 23344443 454 343 79999999965555543
No 340
>PRK13748 putative mercuric reductase; Provisional
Probab=93.46 E-value=0.39 Score=52.95 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=27.2
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 69999999999999999999 9999999875
No 341
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=93.09 E-value=0.52 Score=50.83 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=25.9
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 58999999999999999888 8889998863
No 342
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.06 E-value=0.074 Score=52.31 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=30.7
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
--|.|||+|.+|+-+|+++|+ |.+|.|.|.-+..
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 358999999999999999999 9999999987653
No 343
>PTZ00052 thioredoxin reductase; Provisional
Probab=93.02 E-value=0.59 Score=50.62 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=26.7
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 68999999999999999998 9999999863
No 344
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=92.92 E-value=0.095 Score=54.25 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=28.9
Q ss_pred cEEEECCCcchhHHHHhhcC----CCeEEEEeccCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ----NASVLLLERGGSP 81 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~----G~~VlvLE~G~~~ 81 (575)
.|||||+|++|+.+|.+|.+ +.+|+|+|+....
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 48999999999999999963 6899999998764
No 345
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=92.80 E-value=0.47 Score=54.24 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=27.9
Q ss_pred cEEEECCCcchhHHHHhhcC-CCe-EEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~-VlvLE~G~ 79 (575)
.|+|||+|..|+-+|..|.+ |.+ |.|+++..
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 69999999999999999988 876 99998763
No 346
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=92.34 E-value=0.12 Score=53.82 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=42.3
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHhhc
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 292 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~Sg 292 (575)
+....++.|++++++++|.++..+++ . ..|... +|+. +. ++.||+|+|.--++.++..+|
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~~~-----~-~~v~~~--~g~~--i~-----~D~vI~a~G~~p~~~l~~~~g 248 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKTDS-----G-IRATLD--SGRS--IE-----VDAVIAAAGLRPNTALARRAG 248 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEccCC-----E-EEEEEc--CCcE--EE-----CCEEEECcCCCcchHHHHHCC
Confidence 33456678999999999999976543 2 234443 5643 43 799999999776777776666
No 347
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=92.26 E-value=0.52 Score=47.34 Aligned_cols=58 Identities=14% Similarity=0.283 Sum_probs=38.5
Q ss_pred hhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCc
Q 008163 219 LEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 282 (575)
Q Consensus 219 l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~ 282 (575)
+...+.+++++-.+.+|+.|.++... ++..+..+.+. .+++..+.. ..+-|++..|.+
T Consensus 234 i~yL~~H~Vdf~~~~~Vedi~v~~t~-gkkvA~aih~~-~d~~~ieLt----~dDlVfvTNgsi 291 (587)
T COG4716 234 ITYLKSHGVDFTYDQKVEDIDVDDTP-GKKVAKAIHVL-GDAETIELT----PDDLVFVTNGSI 291 (587)
T ss_pred HHHHHHcCCceEeccEEeeeeeccCc-chhHHHHHHHh-cCcceeecC----CCceEEEeccee
Confidence 33667899999999999999998752 11223333322 245555544 678899888865
No 348
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=92.14 E-value=0.061 Score=51.15 Aligned_cols=47 Identities=30% Similarity=0.543 Sum_probs=35.7
Q ss_pred cEEEECCCcchhHHHHhhcC---CCeEEEEeccCCCCCCCCcccchhhhh
Q 008163 49 DYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSPYGNPNITNLGSFGA 95 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~---G~~VlvLE~G~~~~~~~~~~~~~~~~~ 95 (575)
.+||||+|+||-++|..|+. ..+||+|-+.+.....++......+..
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~yle 50 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLE 50 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHH
Confidence 37999999999999999998 689999998876554444444444433
No 349
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=91.75 E-value=0.41 Score=50.38 Aligned_cols=58 Identities=16% Similarity=0.063 Sum_probs=43.8
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHH
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 287 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~l 287 (575)
+.+..++.|++++++++|+++..+++ +++.+... +|+...+. ++.||||+|.+.+.-|
T Consensus 265 L~~~l~~~Gv~I~~g~~V~~v~~~~~-----~V~~v~~~--~g~~~~i~-----AD~VVLAtGrf~s~GL 322 (422)
T PRK05329 265 LRRAFERLGGRIMPGDEVLGAEFEGG-----RVTAVWTR--NHGDIPLR-----ARHFVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeCC-----EEEEEEee--CCceEEEE-----CCEEEEeCCCcccCce
Confidence 44456678999999999999988765 67776532 55555564 7999999998866655
No 350
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=91.39 E-value=0.15 Score=53.37 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=33.3
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
.-+++|||+|..|+.+|..|++ |++|.++|+.+...
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~ 172 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLG 172 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccc
Confidence 3689999999999999999999 99999999998764
No 351
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=91.28 E-value=0.75 Score=47.06 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=27.7
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-C--CeEEEEeccCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGS 80 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G--~~VlvLE~G~~ 80 (575)
.....|+|||||-++.-++..|.+ + .+|.++=|+..
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 446789999999999999999988 5 48999988864
No 352
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=91.08 E-value=0.96 Score=48.52 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=28.0
Q ss_pred ccEEEECCCcchhHHHHhhcC-CC-eEEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~-~VlvLE~G~ 79 (575)
-.++|||+|..|+-+|..+.+ |. +|.|+++..
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 469999999999999999888 85 799999874
No 353
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=90.71 E-value=0.19 Score=44.72 Aligned_cols=30 Identities=40% Similarity=0.579 Sum_probs=28.3
Q ss_pred EEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 50 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
+.|+|+|..|+..|.+|++ |.+|.++-|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 5899999999999999999 99999999886
No 354
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=90.39 E-value=1.8 Score=50.55 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=27.7
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
.|+|||+|..|+=+|..+.+ |.+|.++.+.
T Consensus 449 ~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr 479 (944)
T PRK12779 449 EVFVIGGGNTAMDAARTAKRLGGNVTIVYRR 479 (944)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence 69999999999999999988 9999999876
No 355
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=89.79 E-value=1.9 Score=48.47 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=26.8
Q ss_pred ccEEEECCCcchhHHHHhhcC-CC-eEEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~-~VlvLE~G~ 79 (575)
-.|+|||+|..|+-+|..+.+ |. +|.++++..
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 369999999999999988777 75 799988763
No 356
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=89.68 E-value=0.28 Score=46.92 Aligned_cols=32 Identities=38% Similarity=0.636 Sum_probs=29.8
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
.+||||+|--|..+|..|++ |+.|+++|+...
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 58999999999999999999 999999998854
No 357
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=89.65 E-value=0.29 Score=51.32 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=31.0
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
-.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~ 179 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATV 179 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 369999999999999999999 9999999998754
No 358
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=89.04 E-value=2.3 Score=50.15 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=25.2
Q ss_pred ccEEEECCCcchhHHHHhhcC-CC-eEEEEecc
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERG 78 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~-~VlvLE~G 78 (575)
=.|+|||+|..|+=+|..+.. |. +|.++.+.
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr 604 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR 604 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence 479999999999998888877 86 57777654
No 359
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=88.67 E-value=0.42 Score=44.61 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=27.8
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
.-.|+|||+|.++.-+|..|++ |.+|.++=|.+.
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 3579999999999999999999 999999988754
No 360
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=88.48 E-value=0.31 Score=43.78 Aligned_cols=30 Identities=37% Similarity=0.495 Sum_probs=27.8
Q ss_pred EEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 50 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
+.|+|+|..|.++|..|++ |.+|.|..+..
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 7899999999999999999 99999998764
No 361
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=88.37 E-value=0.39 Score=44.38 Aligned_cols=30 Identities=33% Similarity=0.495 Sum_probs=24.7
Q ss_pred EEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 50 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
|.|||.|..|+.+|..||+ |++|+.+|...
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 7899999999999999999 99999999874
No 362
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=88.15 E-value=0.44 Score=47.98 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=29.6
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
..+.|||+|+.|+..|.+|++ |.+|.++.|+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 359999999999999999999 99999999974
No 363
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=88.15 E-value=0.41 Score=50.95 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=30.7
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
.++|||+|.+|+-+|..|++ |.+|.|+|+++..
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 69999999999999999999 9999999998654
No 364
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=87.96 E-value=0.4 Score=44.64 Aligned_cols=33 Identities=27% Similarity=0.274 Sum_probs=29.6
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.-.|+|||||+++-++|+.+++ .+|-+|.|-..
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~ 41 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM 41 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeee
Confidence 3479999999999999999999 89999999763
No 365
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=87.37 E-value=0.46 Score=43.71 Aligned_cols=30 Identities=33% Similarity=0.502 Sum_probs=26.0
Q ss_pred EEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 50 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
|.|||+|..|...|..++. |++|.++|..+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 7899999999999999999 99999999864
No 366
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=87.20 E-value=0.63 Score=47.05 Aligned_cols=32 Identities=31% Similarity=0.309 Sum_probs=29.5
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
-.+.|||+|..|+..|..|++ |..|.++.|+.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 359999999999999999999 99999999874
No 367
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=86.98 E-value=3.1 Score=43.42 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=43.2
Q ss_pred cCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHHHHHh
Q 008163 222 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 290 (575)
Q Consensus 222 ~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~lLl~ 290 (575)
.++.|++++.++.+..+..+..+ +++.|... +|+. + .++.||++.|+--...++..
T Consensus 265 ~e~kgVk~~~~t~~s~l~~~~~G----ev~~V~l~--dg~~--l-----~adlvv~GiG~~p~t~~~~~ 320 (478)
T KOG1336|consen 265 YENKGVKFYLGTVVSSLEGNSDG----EVSEVKLK--DGKT--L-----EADLVVVGIGIKPNTSFLEK 320 (478)
T ss_pred HHhcCeEEEEecceeecccCCCC----cEEEEEec--cCCE--e-----ccCeEEEeeccccccccccc
Confidence 34568999999999999988765 88888887 5654 3 37999999997655555554
No 368
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.87 E-value=5.3 Score=40.02 Aligned_cols=33 Identities=33% Similarity=0.383 Sum_probs=28.9
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.-||.|||+|.+|.-+|.-||- =..|.|||=.+
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~ 387 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 387 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence 4599999999999999999998 67899998553
No 369
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=85.88 E-value=1.3 Score=47.27 Aligned_cols=55 Identities=13% Similarity=0.341 Sum_probs=39.4
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCce-eEEeeecCCCcEEEEccCC
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAK-HRAYLKNGPKNEIIVSAGA 281 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~-~~v~~~~~aa~~VVlAaG~ 281 (575)
+...+++.|.+|++++.|++|..++++ +++||++.+..++. +++. ++.||+|+..
T Consensus 219 l~~~l~~~g~~i~l~~~V~~I~~~~~~----~v~~v~~~~~~~~~~~~~~-----a~~VI~a~p~ 274 (453)
T TIGR02731 219 IVDYITSRGGEVRLNSRLKEIVLNEDG----SVKHFVLADGEGQRRFEVT-----ADAYVSAMPV 274 (453)
T ss_pred HHHHHHhcCCEEeCCCeeEEEEECCCC----CEEEEEEecCCCCceeEEE-----CCEEEEcCCH
Confidence 444455578999999999999876553 78899987433322 2343 7999999875
No 370
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=85.65 E-value=0.46 Score=49.86 Aligned_cols=29 Identities=28% Similarity=0.224 Sum_probs=26.0
Q ss_pred cchhHHHHhhcC-CCeEEEEeccCCCCCCC
Q 008163 57 TAGCPLAATLSQ-NASVLLLERGGSPYGNP 85 (575)
Q Consensus 57 ~aG~~~A~~La~-G~~VlvLE~G~~~~~~~ 85 (575)
++|+++|++|++ |.+|+|||+.+..++..
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~ 30 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRI 30 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcce
Confidence 489999999999 99999999999887644
No 371
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=85.49 E-value=0.68 Score=49.26 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=30.4
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l 183 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDKI 183 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 69999999999999999999 9999999998653
No 372
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.16 E-value=0.72 Score=49.71 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=28.9
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.|+|||+|.+|+.+|..|++ |.+|.++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 69999999999999999999 99999999764
No 373
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=84.94 E-value=0.5 Score=46.12 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=29.4
Q ss_pred CCCcccEEEECCCcchhHHHHhhcC-C-CeEEEEeccCC
Q 008163 44 PVSYYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGS 80 (575)
Q Consensus 44 ~~~~~DvIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~~ 80 (575)
..+.| |||||+|..|+.++..|.+ | .|+.+++=...
T Consensus 72 l~~sy-VVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqV 109 (430)
T KOG2018|consen 72 LTNSY-VVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQV 109 (430)
T ss_pred hcCcE-EEEEecCchhHHHHHHHHHhcCceEEEechhhc
Confidence 34455 9999999999999999999 8 68999875543
No 374
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=84.86 E-value=0.78 Score=49.13 Aligned_cols=34 Identities=35% Similarity=0.585 Sum_probs=31.0
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
-.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 369999999999999999999 9999999998754
No 375
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=84.22 E-value=0.77 Score=46.28 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=28.9
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.|.|||+|..|...|..|++ |++|.++++..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 58999999999999999999 99999999874
No 376
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.97 E-value=0.82 Score=48.95 Aligned_cols=31 Identities=29% Similarity=0.361 Sum_probs=28.8
Q ss_pred EEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 50 YIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
|.|||.|.+|+++|..|++ |++|.+.|+...
T Consensus 3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 8999999999999999999 999999998754
No 377
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=83.93 E-value=1.1 Score=51.77 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=29.6
Q ss_pred cEEEECCCcchhHHHHhhcC-----CCeEEEEeccCCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGSPY 82 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-----G~~VlvLE~G~~~~ 82 (575)
++||||+|++|+.+|.+|.+ +.+|+|+++.+...
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 79999999999999999864 47999999997653
No 378
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=83.52 E-value=1 Score=50.31 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=30.7
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
.++|||+|..|+-.|..|++ |.+|.|+|+++..
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 69999999999999999999 9999999998764
No 379
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=83.46 E-value=2.4 Score=45.53 Aligned_cols=35 Identities=29% Similarity=0.316 Sum_probs=32.2
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG 83 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~~ 83 (575)
+|+|||+|.+|+++|++|++ |++|+|+|+.+..++
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG 36 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGG 36 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCc
Confidence 58999999999999999999 999999999887654
No 380
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=83.31 E-value=0.98 Score=45.29 Aligned_cols=29 Identities=34% Similarity=0.531 Sum_probs=27.5
Q ss_pred EEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 50 YIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
+.|||+|..|...|..|++ |.+|.++.|.
T Consensus 3 I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 8999999999999999999 9999999984
No 381
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=83.28 E-value=0.92 Score=45.54 Aligned_cols=28 Identities=25% Similarity=0.494 Sum_probs=27.0
Q ss_pred EEEECCCcchhHHHHhhcC-CCeEEEEec
Q 008163 50 YIIIGGGTAGCPLAATLSQ-NASVLLLER 77 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~-G~~VlvLE~ 77 (575)
+.|||+|..|+..|..|++ |.+|.++.|
T Consensus 3 I~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 7899999999999999999 999999998
No 382
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=83.28 E-value=1 Score=43.95 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=25.4
Q ss_pred cccEEEECCCcchhHHHHhhcC-C-------CeEEEEecc
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-N-------ASVLLLERG 78 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G-------~~VlvLE~G 78 (575)
..+++|||+|..|+++|..+.+ . .+|.|++--
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 4689999999999999976665 3 577777644
No 383
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=83.05 E-value=1.1 Score=49.36 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=30.3
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
-.++|||+|..|+-+|..|++ |.+|.++++++.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 369999999999999999999 999999999864
No 384
>PRK04148 hypothetical protein; Provisional
Probab=82.76 E-value=1.1 Score=38.68 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=28.2
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
-.+++||.| .|..+|..|++ |..|+.+|..+.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 359999999 88888999999 999999998753
No 385
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=82.65 E-value=1.1 Score=45.68 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=28.6
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.+.|||+|.-|++.|.-||+ |+.|+.+|...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 37899999999999999999 99999999874
No 386
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=82.46 E-value=1.2 Score=37.47 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=27.0
Q ss_pred EEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 50 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
|||+|.|..|..+|..|.+ +.+|+++|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999 77999999885
No 387
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=82.03 E-value=1.3 Score=36.58 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=28.4
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
.-.|+|||+|..|..-+..|.+ |.+|.|+...
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4579999999999999999999 9999999765
No 388
>PLN02546 glutathione reductase
Probab=81.57 E-value=1.3 Score=48.65 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=30.8
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 81 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~ 81 (575)
=+++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~i 287 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKV 287 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccc
Confidence 379999999999999999999 9999999998653
No 389
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.51 E-value=1.2 Score=47.47 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=29.8
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.-.|+|||+|..|+.+|..|++ |++|.+.|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3458999999999999999999 99999999864
No 390
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=80.98 E-value=1.3 Score=38.55 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=28.4
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCe-EEEEecc
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERG 78 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~-VlvLE~G 78 (575)
.-.++|||+|.+|..++..|++ |.+ |.|+-|.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 4679999999999999999999 865 9999875
No 391
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=80.56 E-value=1.7 Score=42.81 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=31.9
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
...-+|+|+|+|..|.-+|.-+.. |.+|.+||....
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~ 202 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNID 202 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHH
Confidence 346789999999999999999888 999999998843
No 392
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.32 E-value=1.5 Score=43.74 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=28.5
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.|.|||+|..|..+|..|++ |.+|.++++..
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 48999999999999999999 99999999764
No 393
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.02 E-value=1.5 Score=43.78 Aligned_cols=30 Identities=17% Similarity=0.342 Sum_probs=28.2
Q ss_pred EEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 50 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
|.|||+|..|..+|..|++ |++|.++++..
T Consensus 4 V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 8999999999999999999 99999999874
No 394
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=79.95 E-value=1.5 Score=44.91 Aligned_cols=30 Identities=33% Similarity=0.661 Sum_probs=28.2
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
.+.|||+|..|...|..|++ |++|.++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 48999999999999999999 9999999985
No 395
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.84 E-value=1.6 Score=44.08 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=28.5
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
-|.|||+|..|...|..++. |++|.+.|..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 38899999999999999999 99999999764
No 396
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=79.60 E-value=1.8 Score=38.86 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=27.0
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEe
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLE 76 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE 76 (575)
.-.++|||+|-.|.--|..|.+ |.+|.|+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 3569999999999999999988 99999993
No 397
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=79.47 E-value=1.7 Score=40.85 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=27.9
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEec
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLER 77 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~ 77 (575)
.-.++|||+|-.|...|..|.+ |.+|.|+++
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 3469999999999999999999 999999975
No 398
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=79.16 E-value=1.9 Score=37.51 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=29.1
Q ss_pred ccEEEECCCcchhHHHHhhcC-CC-eEEEEeccCCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP 81 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~-~VlvLE~G~~~ 81 (575)
.-|+|||+|..|+.+|..|+. |. ++.|+|.....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~ 38 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVE 38 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence 458999999999999999999 85 79999987653
No 399
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=78.63 E-value=1.9 Score=42.19 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=31.1
Q ss_pred cccEEEECCCcchhHHHHhhcC-C-CeEEEEeccCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSP 81 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~~~ 81 (575)
...|+|||.|..|+.+|..|+. | .++.|+|.....
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~ 66 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVC 66 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEec
Confidence 5789999999999999999999 8 789999977543
No 400
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.27 E-value=2.1 Score=42.58 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=29.5
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
.|.|||+|..|.-.|..|+. |++|.++|+.+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 58899999999999999999 999999998854
No 401
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=77.90 E-value=2.1 Score=40.10 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=30.2
Q ss_pred cccEEEECCCcchhHHHHhhcC-CC-eEEEEeccCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 80 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~-~VlvLE~G~~ 80 (575)
...|.|||+|..|+.+|..|+. |. ++.|+|....
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~v 56 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVV 56 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 5779999999999999999999 96 7999987744
No 402
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=77.76 E-value=1.8 Score=44.45 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=27.9
Q ss_pred cEEEECCCcchhHHHHhhcC-CCe-EEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~-VlvLE~G~ 79 (575)
.++|||+|..|+-+|..|++ |.+ |.|+++..
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 69999999999999999988 876 99999874
No 403
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=77.58 E-value=2.1 Score=44.09 Aligned_cols=31 Identities=29% Similarity=0.539 Sum_probs=28.8
Q ss_pred cEEEECCCcchhHHHHhhcC-C-CeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~ 79 (575)
+++|||+|..|.++|..||+ + .+|++.+|..
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 58999999999999999999 7 8999999884
No 404
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=77.53 E-value=1.9 Score=44.58 Aligned_cols=32 Identities=34% Similarity=0.436 Sum_probs=29.3
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
..+++|||+|..|..+|..|.. |.+|.++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 4669999999999999999999 9999999975
No 405
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=77.43 E-value=2 Score=40.19 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=28.2
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
--++|+|.|..|..+|.+|.+ |.+|++.|+.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 359999999999999999999 9999998765
No 406
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=77.20 E-value=2.1 Score=40.26 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=27.8
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
-.++|||+|..|..-|..|.+ |.+|.|+...
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 369999999999999999999 9999999743
No 407
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.13 E-value=2.4 Score=42.34 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=28.6
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.+.|||+|..|..+|..|+. |.+|.+.++..
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 48999999999999999999 99999999764
No 408
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=77.11 E-value=2.8 Score=37.96 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=29.0
Q ss_pred CcccEEEECCCc-chhHHHHhhcC-CCeEEEEecc
Q 008163 46 SYYDYIIIGGGT-AGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 46 ~~~DvIIVGsG~-aG~~~A~~La~-G~~VlvLE~G 78 (575)
....++|||+|- .|..+|..|.+ |.+|.++.|.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 467899999996 69999999998 9999999875
No 409
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=77.01 E-value=2.6 Score=44.83 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=31.9
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccCCCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY 82 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~~~ 82 (575)
=+|+|||+|.+|.-+|.+|++ |.+|.++=|.+...
T Consensus 176 KrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~ 211 (443)
T COG2072 176 KRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI 211 (443)
T ss_pred CeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence 579999999999999999999 99999999987643
No 410
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=76.66 E-value=2.2 Score=42.62 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=28.5
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.|.|||+|..|..+|..|+. |.+|.++|+.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 38999999999999999999 99999999764
No 411
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=76.02 E-value=2.5 Score=43.11 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=31.1
Q ss_pred cccEEEECCCcchhHHHHhhcC-CC-eEEEEeccCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP 81 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~-~VlvLE~G~~~ 81 (575)
...|+|||+|..|+.+|..|+. |. ++.|+|.....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve 60 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVE 60 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccC
Confidence 5779999999999999999999 86 89999987543
No 412
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=75.80 E-value=3.2 Score=40.11 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=31.5
Q ss_pred cccEEEECCCcchhHHHHhhcC-C-CeEEEEeccCCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPY 82 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~~~~ 82 (575)
...|+|||.|..|+.+|..|+. | .++.++|......
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~ 61 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSL 61 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence 5789999999999999999999 8 5899999876544
No 413
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=75.43 E-value=2.4 Score=43.10 Aligned_cols=29 Identities=38% Similarity=0.520 Sum_probs=27.4
Q ss_pred EEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 50 YIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
+.|||+|.-|...|..|++ |.+|.++.|.
T Consensus 3 I~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 7899999999999999999 9999999885
No 414
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=75.41 E-value=3 Score=36.52 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=29.1
Q ss_pred EEEECCCcchhHHHHhhcC-CC-eEEEEeccCCCC
Q 008163 50 YIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSPY 82 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~-G~-~VlvLE~G~~~~ 82 (575)
|+|||.|..|+.+|..|+. |. ++.++|......
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~ 36 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTVEL 36 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCc
Confidence 7999999999999999999 85 799999876543
No 415
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=75.39 E-value=3.3 Score=42.29 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=31.5
Q ss_pred cccEEEECCCcchhHHHHhhcC-CC-eEEEEeccCCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSPY 82 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~-~VlvLE~G~~~~ 82 (575)
...|+|||+|..|+.+|..|+. |. ++.|+|......
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~ 61 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEW 61 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccc
Confidence 4679999999999999999999 85 899999886543
No 416
>PRK07233 hypothetical protein; Provisional
Probab=75.38 E-value=4.3 Score=42.87 Aligned_cols=66 Identities=20% Similarity=0.138 Sum_probs=43.9
Q ss_pred CCCCccccHHHhhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCcHH
Q 008163 207 DQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 286 (575)
Q Consensus 207 ~~~g~r~~~~~~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~sp~ 286 (575)
+..|.......+...+++.|++|+++++|++|..+++ +++++.. +++. +. ++.||+|+..-..++
T Consensus 193 ~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~-----~~~~~~~---~~~~--~~-----ad~vI~a~p~~~~~~ 257 (434)
T PRK07233 193 LEGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGG-----GVTGVEV---DGEE--ED-----FDAVISTAPPPILAR 257 (434)
T ss_pred cCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCC-----ceEEEEe---CCce--EE-----CCEEEECCCHHHHHh
Confidence 3455433333455566677899999999999988766 6655542 3432 33 799999998644444
Q ss_pred H
Q 008163 287 L 287 (575)
Q Consensus 287 l 287 (575)
+
T Consensus 258 l 258 (434)
T PRK07233 258 L 258 (434)
T ss_pred h
Confidence 3
No 417
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=75.07 E-value=2.8 Score=44.87 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=29.6
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
=.|+|||+|.+|+=+|..|++ +.+|.++.|++
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 369999999999999999999 99999999875
No 418
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=74.86 E-value=3 Score=42.41 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=28.6
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.+.|||+|..|...|..|++ |++|.+++|..
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 49999999999999999999 99999998853
No 419
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=74.78 E-value=2.6 Score=38.25 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=28.1
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
..-|+|+|+|..|.-+|.-|.. |.+|.++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 4679999999999999999988 99999999763
No 420
>PLN02612 phytoene desaturase
Probab=74.57 E-value=4.7 Score=44.45 Aligned_cols=51 Identities=10% Similarity=0.199 Sum_probs=37.4
Q ss_pred hhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCC
Q 008163 218 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 281 (575)
Q Consensus 218 ~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~ 281 (575)
+....++.|.+|+++++|++|..++++ ++++|.+. +|+. +. ++.||+|+..
T Consensus 314 l~~~l~~~G~~I~l~~~V~~I~~~~~g----~v~~v~~~--~G~~--~~-----ad~VI~a~p~ 364 (567)
T PLN02612 314 IVDHFQSLGGEVRLNSRIKKIELNDDG----TVKHFLLT--NGSV--VE-----GDVYVSATPV 364 (567)
T ss_pred HHHHHHhcCCEEEeCCeeeEEEECCCC----cEEEEEEC--CCcE--EE-----CCEEEECCCH
Confidence 334444579999999999999987653 67777775 5643 33 7999999864
No 421
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=74.45 E-value=2.6 Score=41.88 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=28.5
Q ss_pred ccEEEECCCcchhHHHHhhcC-CC-eEEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~-~VlvLE~G~ 79 (575)
-.|+|||+|.+|.++|..|++ |. +|.|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 469999999999999999999 85 799998863
No 422
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=74.05 E-value=3.1 Score=37.97 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=28.0
Q ss_pred EEEECCCcchhHHHHhhcC-CC-eEEEEeccCC
Q 008163 50 YIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 80 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~-G~-~VlvLE~G~~ 80 (575)
|+|||+|..|+.+|..|+. |. ++.++|....
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 34 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV 34 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 7999999999999999999 85 6999998754
No 423
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=73.91 E-value=2.6 Score=42.35 Aligned_cols=31 Identities=35% Similarity=0.563 Sum_probs=28.2
Q ss_pred EEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 50 YIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
+.|+|+|+.|+..|++|++ |..|+++=|...
T Consensus 3 I~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred EEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 7899999999999999999 988999988753
No 424
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.84 E-value=2.6 Score=41.81 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=28.4
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.+.|||+|..|...|..|+. |.+|+++|..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 48999999999999999999 99999998664
No 425
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=73.78 E-value=2.7 Score=41.95 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=27.8
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCe-EEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~-VlvLE~G~ 79 (575)
--++|+|+|.+|.++|..|++ |.+ |.|+.|..
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 358999999999999999999 975 99998763
No 426
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=73.69 E-value=2.6 Score=40.37 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=28.8
Q ss_pred ccEEEECCCcchhHHHHhhcC-CC---eEEEEeccCC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NA---SVLLLERGGS 80 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~---~VlvLE~G~~ 80 (575)
-.++|+|+|.+|..+|..|.+ |. +|.|++|.+.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl 62 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGV 62 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCc
Confidence 359999999999999999999 86 5999999753
No 427
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=73.49 E-value=3 Score=45.67 Aligned_cols=39 Identities=28% Similarity=0.644 Sum_probs=33.5
Q ss_pred cccEEEECCCcchhHHHHhhcC-C-CeEEEEeccCCCCCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPYGNP 85 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~~~~~~~ 85 (575)
..-|+|||+|.-|+.+|..|+. | .++.++|.+.....+.
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL 378 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNP 378 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCcc
Confidence 5779999999999999999999 8 5899999987665443
No 428
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=73.41 E-value=3.2 Score=43.75 Aligned_cols=31 Identities=32% Similarity=0.410 Sum_probs=28.5
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.+.|||.|..|+.+|..|++ |++|+++++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 37899999999999999999 99999999864
No 429
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=73.37 E-value=3 Score=41.89 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=27.0
Q ss_pred cEEEECCCcchhHHHHhhcC-CC-eEEEEecc
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NA-SVLLLERG 78 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~-~VlvLE~G 78 (575)
.+.|||+|..|+.+|+.|+. |. +|+++|.-
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 48899999999999999999 76 89999983
No 430
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=73.29 E-value=3 Score=43.58 Aligned_cols=33 Identities=24% Similarity=0.205 Sum_probs=29.4
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.-.|+|+|.|..|..+|..|.. |.+|+++|..+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 3469999999999999999988 99999998764
No 431
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=73.25 E-value=3.4 Score=40.96 Aligned_cols=34 Identities=26% Similarity=0.646 Sum_probs=30.0
Q ss_pred EEEECCCcchhHHHHhhcC-C-CeEEEEeccCCCCC
Q 008163 50 YIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPYG 83 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~~~~~ 83 (575)
|+|||+|.-|+.+|..|+. | .++.++|.+.....
T Consensus 2 VLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~s 37 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYS 37 (307)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccc
Confidence 7999999999999999999 8 58999998876543
No 432
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=72.60 E-value=3.2 Score=43.71 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=28.7
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.+.|||.|..|+.+|..|++ |++|.++++..
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 48999999999999999999 99999999764
No 433
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=72.34 E-value=4.4 Score=41.74 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=31.0
Q ss_pred cccEEEECCCcchhHHHHhhcC-CC---eEEEEeccCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NA---SVLLLERGGSP 81 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~---~VlvLE~G~~~ 81 (575)
+-.++|.|+|.+|+.+|..|.. |. +|.++|+-+..
T Consensus 199 d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l 237 (432)
T COG0281 199 DQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLL 237 (432)
T ss_pred ceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcc
Confidence 5779999999999999999998 74 79999998764
No 434
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=71.73 E-value=3.9 Score=41.18 Aligned_cols=31 Identities=32% Similarity=0.524 Sum_probs=28.3
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.|.|||+|..|...|..|+. |++|.++++..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 48999999999999999999 99999998753
No 435
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=71.69 E-value=3.5 Score=41.73 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=28.6
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.+.|||+|..|...|..|++ |+.|.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 48999999999999999999 99999999864
No 436
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=71.67 E-value=3.3 Score=43.86 Aligned_cols=33 Identities=33% Similarity=0.726 Sum_probs=28.6
Q ss_pred cEEEECCCcchhHHHHhhcC---------------CCeEEEEeccCCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ---------------NASVLLLERGGSP 81 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~---------------G~~VlvLE~G~~~ 81 (575)
.++|||+|..|+-+|..|++ +.+|.|+|+++..
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 79999999999999988873 5789999998654
No 437
>PRK08328 hypothetical protein; Provisional
Probab=71.56 E-value=3.6 Score=39.50 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=29.2
Q ss_pred cccEEEECCCcchhHHHHhhcC-C-CeEEEEeccCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGS 80 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~~ 80 (575)
...|+|||.|..|+.+|..|+. | .++.|+|....
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4679999999999999999999 8 57888876643
No 438
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=71.51 E-value=3.9 Score=38.34 Aligned_cols=36 Identities=22% Similarity=0.404 Sum_probs=31.3
Q ss_pred CcccEEEECCCcchhHHHHhhcC-CC-eEEEEeccCCC
Q 008163 46 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP 81 (575)
Q Consensus 46 ~~~DvIIVGsG~aG~~~A~~La~-G~-~VlvLE~G~~~ 81 (575)
.+.-|+|||.|..|+.+|..|+. |. ++.++|.....
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve 57 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVD 57 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEc
Confidence 35789999999999999999999 84 89999987543
No 439
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=71.41 E-value=3.9 Score=39.45 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=30.0
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CC-----------eEEEEeccCCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NA-----------SVLLLERGGSP 81 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~-----------~VlvLE~G~~~ 81 (575)
.....|+|||+|..|+.++..||. |. ++.|+|.....
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve 57 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVS 57 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEc
Confidence 346889999999999999999987 52 78888766543
No 440
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=71.39 E-value=3.6 Score=39.89 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=30.2
Q ss_pred cccEEEECCCcchhHHHHhhcC-C-CeEEEEeccCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGS 80 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~~ 80 (575)
+..|+|||.|..|+.+|..|+. | .++.|+|....
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 5789999999999999999999 8 58999987754
No 441
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=70.63 E-value=3.6 Score=40.92 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=29.8
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.-.++|||.|..|..+|..|.. |.+|.+.+|..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3569999999999999999999 99999999864
No 442
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=70.16 E-value=4 Score=39.10 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=29.9
Q ss_pred cccEEEECCCcchhHHHHhhcC-C-CeEEEEeccCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGS 80 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~~ 80 (575)
+..|+|||.|..|+.+|..|+. | .++.|+|....
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v 56 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV 56 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 5789999999999999999999 8 48999987644
No 443
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.93 E-value=3.5 Score=43.88 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=28.3
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
-++|+|+|..|.++|..|++ |.+|++.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 38999999999999999999 99999998764
No 444
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=69.86 E-value=4.1 Score=41.00 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=27.8
Q ss_pred cEEEECCCcchhHHHHhhcC-C--CeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G--~~VlvLE~G~ 79 (575)
.+.|||+|..|+++|+.|+. | ..|.++|+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 48999999999999999999 8 5899999864
No 445
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=69.74 E-value=4.3 Score=35.38 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=26.1
Q ss_pred EEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 50 YIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
++|+|+|..+..+|.-++. |++|.|+|-.+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 5899999999999998888 999999997754
No 446
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=69.62 E-value=5 Score=37.96 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=30.7
Q ss_pred cccEEEECCCcchhHHHHhhcC-CC-eEEEEeccCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP 81 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~-~VlvLE~G~~~ 81 (575)
...|+|||+|..|+.+|..|+. |. ++.++|.....
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve 64 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVE 64 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEec
Confidence 5779999999999999999999 84 69999987543
No 447
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=68.81 E-value=42 Score=34.75 Aligned_cols=136 Identities=21% Similarity=0.316 Sum_probs=0.0
Q ss_pred ccccccCCCCcccEEEECCCcchhHHHHhhcC---CCeEEEEeccCCCCCCCCcccchhhhhccCCCCCCCCCCcccCCC
Q 008163 37 HNATAAQPVSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISED 113 (575)
Q Consensus 37 ~~~~~~~~~~~~DvIIVGsG~aG~~~A~~La~---G~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (575)
..+.+........++|||+|.+..+++..... +.+|++|-.-+...
T Consensus 168 ~~P~~~~~p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelP------------------------------- 216 (659)
T KOG1346|consen 168 SPPSSEDLPKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELP------------------------------- 216 (659)
T ss_pred CCCccccCcccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCc-------------------------------
Q ss_pred cccccCcceecchhhcccceecCCChh---hhhcCCCChhhhhhhhhhhhhhcccCCCCchhHHHHHHHHHHcCCCCCCC
Q 008163 114 GVINSRARVLGGGSCLNAGFYTRAAPY---YVREVGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNG 190 (575)
Q Consensus 114 ~~~~~~g~~lGG~s~~~~~~~~r~~~~---~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (575)
|+||.-. | |..+. ...+++.+.+.++
T Consensus 217 --------------------YmRPPLSKELW-----~~~dp--------------------------n~~k~lrfkqwsG 245 (659)
T KOG1346|consen 217 --------------------YMRPPLSKELW-----WYGDP--------------------------NSAKKLRFKQWSG 245 (659)
T ss_pred --------------------ccCCCcchhce-----ecCCC--------------------------ChhhheeecccCC
Q ss_pred CCcCCCCcceeeeeEECCCCccccHHHhhhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecC
Q 008163 191 FTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNG 270 (575)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~g~r~~~~~~l~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~ 270 (575)
.... -++..++-..+... |+.+...|+.|+.+-.|.+|..++. -|... +|.+...
T Consensus 246 keRs---------iffepd~FfvspeD-Lp~~~nGGvAvl~G~kvvkid~~d~--------~V~Ln--DG~~I~Y----- 300 (659)
T KOG1346|consen 246 KERS---------IFFEPDGFFVSPED-LPKAVNGGVAVLRGRKVVKIDEEDK--------KVILN--DGTTIGY----- 300 (659)
T ss_pred ccce---------eEecCCcceeChhH-CcccccCceEEEeccceEEeecccC--------eEEec--CCcEeeh-----
Q ss_pred CCcEEEEccCC
Q 008163 271 PKNEIIVSAGA 281 (575)
Q Consensus 271 aa~~VVlAaG~ 281 (575)
+...+|+|+
T Consensus 301 --dkcLIATG~ 309 (659)
T KOG1346|consen 301 --DKCLIATGV 309 (659)
T ss_pred --hheeeecCc
No 448
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=68.21 E-value=4.8 Score=40.52 Aligned_cols=31 Identities=26% Similarity=0.526 Sum_probs=27.6
Q ss_pred EEEECCCcchhHHHHhhcC-C--CeEEEEeccCC
Q 008163 50 YIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGS 80 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~-G--~~VlvLE~G~~ 80 (575)
+.|||+|..|.++|+.|+. | ..|.++++...
T Consensus 3 I~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 7999999999999999999 7 47999998643
No 449
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=68.16 E-value=6.3 Score=39.32 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=43.3
Q ss_pred hhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEeeecCCCcEEEEccCCcCc
Q 008163 220 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 284 (575)
Q Consensus 220 ~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~~~g~~~~v~~~~~aa~~VVlAaG~~~s 284 (575)
...++.|..++++-+|.+..+.++ +|+.|.++ +.....+. ++.+|||+|+|=|
T Consensus 266 ~~f~~~Gg~~m~Gd~V~~a~~~~~-----~v~~i~tr--n~~diP~~-----a~~~VLAsGsffs 318 (421)
T COG3075 266 RQFEQLGGLWMPGDEVKKATCKGG-----RVTEIYTR--NHADIPLR-----ADFYVLASGSFFS 318 (421)
T ss_pred HHHHHcCceEecCCceeeeeeeCC-----eEEEEEec--ccccCCCC-----hhHeeeecccccc
Confidence 355678999999999999999888 99999888 45445553 8999999998644
No 450
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=68.09 E-value=4.9 Score=38.21 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=27.0
Q ss_pred EEEEC-CCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 50 YIIIG-GGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 50 vIIVG-sG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
+.||| +|..|.++|..|++ |++|.+..+..
T Consensus 3 I~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 78997 79999999999999 99999987764
No 451
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=68.09 E-value=4.9 Score=43.01 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=27.6
Q ss_pred cEEEECCCcchhHHHHhhcC-C--CeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G--~~VlvLE~G~ 79 (575)
.+.|||.|..|+.+|..||+ | .+|+.+|...
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 38999999999999999998 5 7899999764
No 452
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=68.04 E-value=4.9 Score=41.93 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=29.8
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.-.|+|||.|..|..+|..|.. |.+|+++|..+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 4479999999999999999998 99999999765
No 453
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=67.76 E-value=5.1 Score=40.33 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=28.0
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
.+.|||+|..|..+|..|++ |++|.+..|.
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 48999999999999999999 9999999875
No 454
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=67.62 E-value=5.6 Score=39.73 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=28.5
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.|.|||+|..|..+|..|+. |.+|.+.|+..
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 38999999999999999999 99999999764
No 455
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=67.38 E-value=4.4 Score=44.12 Aligned_cols=31 Identities=32% Similarity=0.494 Sum_probs=28.0
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
--++|+|+|.+|.++|+.|++ |.+|.++.|.
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 358999999999999999999 9999999774
No 456
>PRK06153 hypothetical protein; Provisional
Probab=67.33 E-value=5.8 Score=40.81 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=31.4
Q ss_pred cccEEEECCCcchhHHHHhhcC-C-CeEEEEeccCCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPY 82 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~~~~ 82 (575)
...|.|||.|..|+.+|..||+ | .++.|+|......
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~ 213 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQ 213 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecc
Confidence 4689999999999999999999 7 5899999876544
No 457
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=66.50 E-value=5.3 Score=43.95 Aligned_cols=34 Identities=18% Similarity=0.367 Sum_probs=31.0
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
+-++||+|.|.-|..+|.+|.+ |.+|+++|+.+.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 5789999999999999999999 999999998753
No 458
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=66.23 E-value=5.6 Score=37.16 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=30.0
Q ss_pred cccEEEECCCcchhHHHHhhcC-C-CeEEEEeccCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGS 80 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~~ 80 (575)
+..|+|||.|..|+.+|..|+. | .++.++|....
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 5779999999999999999999 8 47999987754
No 459
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=66.21 E-value=4.9 Score=43.42 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=29.1
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
.|-|||+|..|.-+|..|+. |++|.+.|+...
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 38999999999999999999 999999998743
No 460
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=66.13 E-value=6.4 Score=37.00 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=31.2
Q ss_pred CCcccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 45 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 45 ~~~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
.+.-.|-|||+|.-|+-+|.-.+. |+.|.|+++...
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 344679999999999999998888 999999998753
No 461
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=65.88 E-value=5.1 Score=42.75 Aligned_cols=31 Identities=35% Similarity=0.597 Sum_probs=28.7
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.|+|||+|..|..+|..|.+ |..|.++|+.+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 48999999999999999999 99999999864
No 462
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=65.82 E-value=5.6 Score=38.22 Aligned_cols=33 Identities=18% Similarity=0.473 Sum_probs=28.9
Q ss_pred EEEECCCcchhHHHHhhcC-C-CeEEEEeccCCCC
Q 008163 50 YIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPY 82 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~~~~ 82 (575)
|+|||+|..|+.++..|+. | .++.|+|......
T Consensus 2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~ 36 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDV 36 (234)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcc
Confidence 7999999999999999999 8 5899999876543
No 463
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=65.43 E-value=5.7 Score=41.41 Aligned_cols=30 Identities=27% Similarity=0.266 Sum_probs=27.2
Q ss_pred EEEECCCcchhHHHHhhcCCCeEEEEeccC
Q 008163 50 YIIIGGGTAGCPLAATLSQNASVLLLERGG 79 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~G~~VlvLE~G~ 79 (575)
|.|||.|..|+.+|..++.|++|+++|+..
T Consensus 3 I~VIGlGyvGl~~A~~lA~G~~VigvD~d~ 32 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIAQNHEVVALDILP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCcEEEEECCH
Confidence 789999999999998777799999999875
No 464
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=65.39 E-value=5.5 Score=39.51 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=27.3
Q ss_pred ccEEEECCCcchhHHHHhhcC-CC-eEEEEecc
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERG 78 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~-~VlvLE~G 78 (575)
-.++|+|+|.++-++|+.|++ |. +|.|+.|.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 458999999999999999998 84 79999875
No 465
>PRK08017 oxidoreductase; Provisional
Probab=65.02 E-value=6.2 Score=38.14 Aligned_cols=30 Identities=27% Similarity=0.227 Sum_probs=27.2
Q ss_pred EEEECC-CcchhHHHHhhcC-CCeEEEEeccC
Q 008163 50 YIIIGG-GTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 50 vIIVGs-G~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
++|+|+ |..|..+|.+|++ |.+|+++.|..
T Consensus 5 vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 899998 9999999999999 99999998753
No 466
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=64.87 E-value=5.9 Score=39.03 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=28.1
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
-.++|+|+|..|..+|..|++ |.+|.++.|.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 368999999999999999999 9999999875
No 467
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=64.85 E-value=6.9 Score=30.88 Aligned_cols=30 Identities=27% Similarity=0.516 Sum_probs=26.6
Q ss_pred ccEEEECCCcchhHHHHhhcC--CCeEEEEec
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ--NASVLLLER 77 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~--G~~VlvLE~ 77 (575)
-.++|+|+|..|..+|..|.+ +.+|.+.++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 459999999999999999988 478999888
No 468
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=64.83 E-value=5.9 Score=39.65 Aligned_cols=33 Identities=30% Similarity=0.380 Sum_probs=29.9
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.-.++|||.|..|..+|..|.. |.+|.+.++..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4579999999999999999999 99999998873
No 469
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=64.78 E-value=3.8 Score=42.25 Aligned_cols=30 Identities=33% Similarity=0.759 Sum_probs=0.0
Q ss_pred EEEECCCcchhHHHHhhc--------------C-CCeEEEEeccC
Q 008163 50 YIIIGGGTAGCPLAATLS--------------Q-NASVLLLERGG 79 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La--------------~-G~~VlvLE~G~ 79 (575)
++|||+|+.|.-.|.+|+ + -.+|.++|+.+
T Consensus 221 ~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d 265 (491)
T KOG2495|consen 221 FVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAAD 265 (491)
T ss_pred EEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccch
No 470
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=64.71 E-value=5.9 Score=41.62 Aligned_cols=34 Identities=24% Similarity=0.175 Sum_probs=30.0
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
.--|+|+|.|..|..+|..|.. |.+|++.|+.+.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 3469999999999999999998 999999997653
No 471
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=64.53 E-value=6.3 Score=36.78 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=29.8
Q ss_pred cccEEEECCCcchhHHHHhhcC-C-CeEEEEeccCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGS 80 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~~ 80 (575)
..-|+|||.|.-|+.+|..|+. | .++.++|-...
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~v 56 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTV 56 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcc
Confidence 5779999999999999999999 8 47999987754
No 472
>PRK08223 hypothetical protein; Validated
Probab=64.46 E-value=7.7 Score=38.35 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=31.3
Q ss_pred cccEEEECCCcchhHHHHhhcC-C-CeEEEEeccCCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPY 82 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~~~~ 82 (575)
+..|+|||.|.-|+.+|..|+. | .++.|+|......
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~ 64 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFEL 64 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcch
Confidence 5789999999999999999999 8 5899998776543
No 473
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=64.40 E-value=5.5 Score=39.46 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=27.9
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.+.|||.|..|...|..|.+ |.+|.++++..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 37899999999999999999 99999998753
No 474
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=64.31 E-value=6.5 Score=39.30 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=28.4
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
-|-|||+|.-|.-.|..+|. |++|.+.|...
T Consensus 5 kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 5 KVAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred EEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 37899999999999999999 89999999873
No 475
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=64.07 E-value=5.7 Score=39.14 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=27.7
Q ss_pred cEEEECCCcchhHHHHhhcC-CC-eEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~-~VlvLE~G~ 79 (575)
.++|+|+|.++.++++.|++ |. +|.|+.|..
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 69999999999999999998 85 699998864
No 476
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=63.96 E-value=5.9 Score=44.93 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=28.8
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
-|.|||+|..|.-+|..++. |++|.++|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 48999999999999999999 99999999774
No 477
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=63.56 E-value=5.9 Score=42.65 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=29.2
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.-.|+|+|+|.+|+.++.-+.. |.+|.++|..+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5679999999999999888877 99999998764
No 478
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=63.36 E-value=7 Score=36.27 Aligned_cols=31 Identities=32% Similarity=0.562 Sum_probs=27.5
Q ss_pred ccEEEECC-CcchhHHHHhhcC-CCeEEEEecc
Q 008163 48 YDYIIIGG-GTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 48 ~DvIIVGs-G~aG~~~A~~La~-G~~VlvLE~G 78 (575)
-.++|+|+ |..|..+|..|++ |.+|.++.|.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46999996 9999999999999 9999999765
No 479
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=63.27 E-value=6.3 Score=42.61 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=28.5
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
.|-|||+|..|...|..|+. |++|.|.++.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 48899999999999999999 99999999864
No 480
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=63.26 E-value=9 Score=38.79 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=29.4
Q ss_pred cccEEEECCCcchhHHHHhhcC-CC-eEEEEeccCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 80 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~-~VlvLE~G~~ 80 (575)
..-+.|||+|..|..+|+.|+. |+ +|.|+|....
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3569999999999999999988 85 8999998654
No 481
>PLN02494 adenosylhomocysteinase
Probab=63.24 E-value=6.8 Score=41.51 Aligned_cols=34 Identities=26% Similarity=0.199 Sum_probs=30.2
Q ss_pred cccEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
.-.++|+|.|..|..+|.+|.. |.+|+++|+.+.
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~ 288 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI 288 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 3579999999999999999988 999999998753
No 482
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=63.12 E-value=8.3 Score=36.77 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=33.7
Q ss_pred cccEEEECCCcchhHHHHhhcC-C-CeEEEEeccCCCCCCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPYGNPN 86 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~~~~~~~~ 86 (575)
+..|+|||-|..|+.++-.|++ | .++.|+|.....-.+.+
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~N 71 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTN 71 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccc
Confidence 4679999999999999999999 8 58999999876554443
No 483
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=62.97 E-value=6.3 Score=44.66 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=29.3
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
--|.|||+|..|.-+|..++. |+.|.++|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 359999999999999999999 99999999874
No 484
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=62.89 E-value=8.6 Score=40.05 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=42.2
Q ss_pred ccCCCCeEeccCCceee-eccCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHhh
Q 008163 517 VVDHDYKVLGVDALRVI-DGSTFYYSPGTNPQATVMMLGRYVNLTTSKYVSKILV 570 (575)
Q Consensus 517 VVD~~~rv~g~~nL~V~-DaSv~P~~~~~NP~lTi~Ala~r~a~~i~~~~~~~~~ 570 (575)
+||+++++.|++|+|++ |.+-++.. +|...++=+|++.++.+.+.+.+.+.
T Consensus 281 ~V~~~L~~~~~~~IFa~GD~A~~~~~---~p~P~tAQ~A~Qqg~~~a~ni~~~l~ 332 (405)
T COG1252 281 VVNPTLQVPGHPDIFAAGDCAAVIDP---RPVPPTAQAAHQQGEYAAKNIKARLK 332 (405)
T ss_pred EeCCCcccCCCCCeEEEeccccCCCC---CCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998 55556655 77778888899998888888877654
No 485
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=62.48 E-value=6.5 Score=38.93 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=28.6
Q ss_pred ccEEEECCCcchhHHHHhhcC-C-CeEEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~ 79 (575)
-.++|+|+|.+|..+|..|++ | .+|.|+.|..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 469999999999999999999 8 7899998863
No 486
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=62.05 E-value=7.3 Score=37.34 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=30.3
Q ss_pred cccEEEECCCcchhHHHHhhcC-C-CeEEEEeccCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSP 81 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~~~ 81 (575)
+..|+|||.|..|+.+|..|+. | .++.|+|.....
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~ 47 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVC 47 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEEC
Confidence 4679999999999999999999 8 489999877543
No 487
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=62.01 E-value=7 Score=38.81 Aligned_cols=32 Identities=16% Similarity=0.360 Sum_probs=28.0
Q ss_pred cccEEEECCCcchhHHHHhhcC-CC-eEEEEecc
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERG 78 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~-~VlvLE~G 78 (575)
.-.++|||+|.+|-++|+.|++ |. +|.|+.|.
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3469999999999999999999 85 79999775
No 488
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=61.95 E-value=6.8 Score=42.46 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=29.1
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
-|-|||+|..|.-.|..|+. |+.|.+.|+...
T Consensus 9 ~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 38899999999999999999 999999998753
No 489
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=61.80 E-value=7.8 Score=38.09 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=26.1
Q ss_pred cEEEECCC---cchhHHHHhhcC-CCeEEEEecc
Q 008163 49 DYIIIGGG---TAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 49 DvIIVGsG---~aG~~~A~~La~-G~~VlvLE~G 78 (575)
-++|.|++ ..|..+|.+|++ |.+|++..|.
T Consensus 9 ~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~ 42 (271)
T PRK06505 9 RGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQG 42 (271)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCc
Confidence 48899987 689999999999 9999998764
No 490
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=61.78 E-value=6.3 Score=39.51 Aligned_cols=30 Identities=37% Similarity=0.501 Sum_probs=26.6
Q ss_pred EEEECCCcchhHHHHhhcC-CC-eEEEEeccC
Q 008163 50 YIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG 79 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~-G~-~VlvLE~G~ 79 (575)
+.|||+|..|..+|..|+. |+ .|.++|...
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 4799999999999999987 65 999999874
No 491
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=61.39 E-value=7.1 Score=38.81 Aligned_cols=31 Identities=23% Similarity=0.531 Sum_probs=27.5
Q ss_pred EEEECCCcchhHHHHhhcC-C-CeEEEEeccCC
Q 008163 50 YIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGS 80 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~~ 80 (575)
|+|||+|..|+.+|..|+. | .++.|+|-...
T Consensus 2 VlVVGaGGlG~eilknLal~Gvg~I~IvD~D~V 34 (291)
T cd01488 2 ILVIGAGGLGCELLKNLALSGFRNIHVIDMDTI 34 (291)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence 7999999999999999999 8 47999987654
No 492
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=61.28 E-value=8 Score=38.85 Aligned_cols=33 Identities=18% Similarity=0.471 Sum_probs=28.9
Q ss_pred EEEECCCcchhHHHHhhcC-C-CeEEEEeccCCCC
Q 008163 50 YIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPY 82 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~-G-~~VlvLE~G~~~~ 82 (575)
|+|||+|..|+-+|..|+. | .++.|+|......
T Consensus 2 VlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~ 36 (312)
T cd01489 2 VLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDL 36 (312)
T ss_pred EEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcch
Confidence 8999999999999999999 8 5899999876543
No 493
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=60.98 E-value=7.4 Score=40.44 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=30.1
Q ss_pred cccEEEECCCcchhHHHHhhcC-CC-eEEEEeccCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS 80 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-G~-~VlvLE~G~~ 80 (575)
..-|+|||+|..|+.+|..|+. |. ++.|++....
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v 170 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVV 170 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 5689999999999999999999 85 7999997754
No 494
>PRK08177 short chain dehydrogenase; Provisional
Probab=60.68 E-value=9.1 Score=36.24 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=26.6
Q ss_pred EEEEC-CCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 50 YIIIG-GGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 50 vIIVG-sG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
|+|.| +|..|..+|.+|++ |.+|+++.|...
T Consensus 4 vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~ 36 (225)
T PRK08177 4 ALIIGASRGLGLGLVDRLLERGWQVTATVRGPQ 36 (225)
T ss_pred EEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCc
Confidence 67887 67788899999999 999999998753
No 495
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=60.60 E-value=7.7 Score=36.24 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=26.2
Q ss_pred EEEECCCcchhHHHHhhcC-CCeEEEEecc
Q 008163 50 YIIIGGGTAGCPLAATLSQ-NASVLLLERG 78 (575)
Q Consensus 50 vIIVGsG~aG~~~A~~La~-G~~VlvLE~G 78 (575)
+.|+|.|..|..+|.+|+. |+.|.+--+.
T Consensus 4 ~~i~GtGniG~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 4 IAIIGTGNIGSALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred EEEeccChHHHHHHHHHHhCCCeEEEecCC
Confidence 6899999999999999999 9999997444
No 496
>PRK06223 malate dehydrogenase; Reviewed
Probab=60.45 E-value=8.1 Score=38.82 Aligned_cols=30 Identities=33% Similarity=0.486 Sum_probs=27.1
Q ss_pred cEEEECCCcchhHHHHhhcC-CC-eEEEEecc
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NA-SVLLLERG 78 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~-~VlvLE~G 78 (575)
.+.|||+|..|..+|..|+. |. .|.++|..
T Consensus 4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~ 35 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALKELGDVVLFDIV 35 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEECC
Confidence 58999999999999999998 65 89999984
No 497
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=60.24 E-value=10 Score=37.32 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=28.1
Q ss_pred cccEEEECCCcchhHHHHhhcC-----CC-------eEEEEeccCCC
Q 008163 47 YYDYIIIGGGTAGCPLAATLSQ-----NA-------SVLLLERGGSP 81 (575)
Q Consensus 47 ~~DvIIVGsG~aG~~~A~~La~-----G~-------~VlvLE~G~~~ 81 (575)
+--++|+|+|.+|..+|..|.+ |. ++.++|+.+..
T Consensus 25 d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll 71 (279)
T cd05312 25 DQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLL 71 (279)
T ss_pred hcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeE
Confidence 3558999999999999988754 54 78999888654
No 498
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=60.11 E-value=6.2 Score=35.36 Aligned_cols=32 Identities=28% Similarity=0.326 Sum_probs=25.7
Q ss_pred ccEEEECCCcchhHHHHhhcC-CCeEEEEeccC
Q 008163 48 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 79 (575)
Q Consensus 48 ~DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~ 79 (575)
-.++|+|=|-.|.-+|.+|.. |.+|.|.|..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 459999999999999999988 99999999875
No 499
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=59.90 E-value=19 Score=38.66 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=42.0
Q ss_pred hhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe---C-------CCceeEEeeecCCCcEEEEccCCcCc-HHHH
Q 008163 220 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD---A-------TGAKHRAYLKNGPKNEIIVSAGALGS-PQLL 288 (575)
Q Consensus 220 ~~~~~~g~~v~~~~~V~~l~~~~~~~~~~~v~GV~~~~---~-------~g~~~~v~~~~~aa~~VVlAaG~~~s-p~lL 288 (575)
..+++.|+++++++.+++|.-+++ ++++|++.. . .|+..++. ++.||+|.|..-. ..++
T Consensus 337 ~~~~~~GV~i~~~~~~~~i~~~~g-----~v~~V~~~~~~~~~g~~~~~~g~~~~i~-----~D~VI~A~G~~p~~~~l~ 406 (471)
T PRK12810 337 SNAHEEGVEREFNVQTKEFEGENG-----KVTGVKVVRTELGEGDFEPVEGSEFVLP-----ADLVLLAMGFTGPEAGLL 406 (471)
T ss_pred HHHHHcCCeEEeccCceEEEccCC-----EEEEEEEEEEEecCCCccccCCceEEEE-----CCEEEECcCcCCCchhhc
Confidence 345567999999999999975554 888887652 1 23344554 8999999995433 3354
Q ss_pred Hhh
Q 008163 289 MLS 291 (575)
Q Consensus 289 l~S 291 (575)
...
T Consensus 407 ~~~ 409 (471)
T PRK12810 407 AQF 409 (471)
T ss_pred ccc
Confidence 433
No 500
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.82 E-value=8.2 Score=41.09 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=28.9
Q ss_pred cEEEECCCcchhHHHHhhcC-CCeEEEEeccCC
Q 008163 49 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS 80 (575)
Q Consensus 49 DvIIVGsG~aG~~~A~~La~-G~~VlvLE~G~~ 80 (575)
.++|+|.|.+|+.+|..|++ |.+|.+.|....
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 58999999999999999999 999999987643
Done!