BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008165
         (575 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZOO|A Chain A, Crystal Structure Of Nitrite Reductase From
           Pseudoalteromonas Haloplanktis Tac125
          Length = 442

 Score = 29.6 bits (65), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 373 LYVASGEIYG-----GEETLRPL-RELF---PNFYTKEMLADEELKPFLQFSSRLAAIDY 423
           +++A+G +YG      +E L P+ RE +    +FYTK    +  L+PF    +     DY
Sbjct: 132 MHIANG-MYGLILVEPKEGLAPVDREYYLVQGDFYTKGEFGEAGLQPFDMAKAIDEDADY 190

Query: 424 IVCDESDVFVTNNNGNMAKILAGRRRYMGH 453
           +V + S    T+ N   AK+    R Y+G+
Sbjct: 191 VVFNGSVGSTTDENSLTAKVGETVRLYIGN 220


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,645,752
Number of Sequences: 62578
Number of extensions: 727528
Number of successful extensions: 1256
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1256
Number of HSP's gapped (non-prelim): 1
length of query: 575
length of database: 14,973,337
effective HSP length: 104
effective length of query: 471
effective length of database: 8,465,225
effective search space: 3987120975
effective search space used: 3987120975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)