BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008165
         (575 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
           GN=At1g04910 PE=1 SV=1
          Length = 519

 Score =  290 bits (743), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 181/471 (38%), Positives = 265/471 (56%), Gaps = 36/471 (7%)

Query: 52  LICGLMLFALGLISLFTGHVASDLEWYSQRLVKPSLYSKLKDGIVRRHQPIDIWKSRYSK 111
           LIC L L       LF+ ++ S+ E        P+  SK+           ++W+S  S 
Sbjct: 33  LICTLSL-------LFSANIGSNRE--------PTRPSKINVE--------ELWESAKSG 69

Query: 112 YYHGCSERRKKFPRARSERSSNGYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELD 171
            +   S  R  +P    E  +NGYL +  +GGLNQQR+ I +AV+ ARI+NATLV+PELD
Sbjct: 70  GWRPSSAPRSDWPPPTKE--TNGYLRVRCNGGLNQQRSAICNAVLAARIMNATLVLPELD 127

Query: 172 HHSYWKDDSDFANIFDVDHFISSLAKDVTIVKRVPD--KVMRSMEKPPYTMRVPRKSTPE 229
            +S+W DDS F  I+DV+HFI +L  DV IV ++PD  K  ++ +   + +R PR +  E
Sbjct: 128 ANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPDVHKNGKTKKIKAFQIRPPRDAPIE 187

Query: 230 YYLDQVLPILLRRRVVQLTKFDYRLANDLDE-ELQKMRCRVNYHALRFTKPIEELGQKLV 288
           +YL   L  +     + LT F +RLA ++D  E Q++RCRVNYHALRF   I +L + +V
Sbjct: 188 WYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIMKLSESIV 247

Query: 289 MRMRSMAKRFIAVHLRFEPDMLAFSGCYYGGGDKERYELGEIRKRWATLPDLSPEGERKR 348
            ++RS    F+++HLRFE DMLAF+GC+     +E+  L + RK       L     R  
Sbjct: 248 DKLRSQG-HFMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYRKENFADKRLIYNERRAI 306

Query: 349 GKCPLTPHEVGLMLRALGFANDTHLYVASGEIYGGEETLRPLRELFPNFYTKEML-ADEE 407
           GKCPLTP EVGL+LRA+ F N T +Y+A+GE++GGE+ ++P R LFP       +   EE
Sbjct: 307 GKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRLDNHSSVDPSEE 366

Query: 408 LKPFLQFSSRLAAIDYIVCDESDVFVTNNNG--NMAKILAGRRRYMGHKRTIRPNAKRLS 465
           L    Q     +A+DY+VC  SD+F+   +G  N A  L G R Y G + TIRP+ K L+
Sbjct: 367 LSATSQ-GLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKALA 425

Query: 466 ALFMAKNQMDWDTFARKVKSC--QRGFMGEPEEMKPGRGEFHEFPYSCICE 514
            +F+A+ +     F   V+    +  F G  + + P     + +P  C C+
Sbjct: 426 PIFIAREKGKRAGFEEAVRRVMLKTNFGGPHKRVSPESFYTNSWP-ECFCQ 475


>sp|B4K5S6|NOL6_DROMO Nucleolar protein 6 OS=Drosophila mojavensis GN=Mat89Ba PE=3 SV=1
          Length = 1187

 Score = 35.0 bits (79), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 12/73 (16%)

Query: 357  EVGLMLRALGFANDTHLYVASGEIYGGEETLRPLRELFPNFYTKEMLADEELKPFLQFSS 416
            E  L+  +LGF     L++ASGE Y     L+P  +L PN    ++ +     PFL FS 
Sbjct: 981  ESSLLSPSLGFVRPAQLFIASGEGYDLVIELKP--DLLPNTLCYDLGS-----PFLPFSQ 1033

Query: 417  R-----LAAIDYI 424
            R     LA ID +
Sbjct: 1034 RNFRLPLAGIDQL 1046


>sp|Q05CL8|LARP7_MOUSE La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2
          Length = 570

 Score = 32.7 bits (73), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 120 RKKFPRARSERSSNGYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELD 171
           + KF R + E+S +GY+ I+     N+ +   TD  ++AR L ++ VV ELD
Sbjct: 47  KDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVV-ELD 97


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.137    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223,784,615
Number of Sequences: 539616
Number of extensions: 9787488
Number of successful extensions: 23979
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 23960
Number of HSP's gapped (non-prelim): 17
length of query: 575
length of database: 191,569,459
effective HSP length: 123
effective length of query: 452
effective length of database: 125,196,691
effective search space: 56588904332
effective search space used: 56588904332
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)