Query 008165
Match_columns 575
No_of_seqs 213 out of 399
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 19:41:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.6 1.7E-14 5.9E-19 149.9 14.0 295 131-455 20-383 (408)
2 3zy2_A Putative GDP-fucose pro 99.1 8.9E-10 3E-14 114.6 15.8 282 131-452 6-348 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 97.4 0.008 2.7E-07 65.5 20.4 251 133-451 145-420 (526)
4 2hhc_A NODZ, nodulation fucosy 97.1 0.006 2.1E-07 61.2 14.0 264 132-445 3-294 (330)
5 3l32_A Phosphoprotein; antipar 33.7 20 0.00067 27.4 1.9 26 273-299 2-27 (45)
6 2g7j_A Putative cytoplasmic pr 23.1 30 0.001 31.1 1.5 19 353-371 3-21 (124)
7 1wgl_A TOLL-interacting protei 20.2 18 0.00061 28.6 -0.5 49 384-436 10-58 (59)
8 1l2m_A REP protein; A+B fold, 20.2 1E+02 0.0035 27.6 4.3 29 350-379 17-45 (118)
9 3k0b_A Predicted N6-adenine-sp 16.6 2.2E+02 0.0076 29.3 6.6 75 282-374 123-206 (393)
10 2eqr_A N-COR1, N-COR, nuclear 15.5 99 0.0034 23.9 2.8 19 348-366 10-28 (61)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.56 E-value=1.7e-14 Score=149.93 Aligned_cols=295 Identities=18% Similarity=0.229 Sum_probs=169.6
Q ss_pred CCCcEEEEEe-CC-CchhhHhhHhhHHHHHHHhcCc----EEecccCCCCcccCC------CCCcccccHHHHHHHhccc
Q 008165 131 SSNGYLLIAA-SG-GLNQQRTGITDAVVVARILNAT----LVVPELDHHSYWKDD------SDFANIFDVDHFISSLAKD 198 (575)
Q Consensus 131 ~snGYL~V~~-nG-GLNQqR~~IcDaVaVARiLNAT----LViP~Ld~~s~WkD~------S~F~DIFDvdhFI~sL~~d 198 (575)
..++||+-.. .| |.|.||...-.|.++|+.||.| ||||-...---|+-. -.|+++||++++ +..
T Consensus 20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~~ 95 (408)
T 4ap5_A 20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NKN 95 (408)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HTT
T ss_pred cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----Hhh
Confidence 5789999885 45 8999999999999999999999 999966433334432 379999999864 445
Q ss_pred cceeccCchhHHhhcCC----------------------CCceec------------CCCCCChhHHH------------
Q 008165 199 VTIVKRVPDKVMRSMEK----------------------PPYTMR------------VPRKSTPEYYL------------ 232 (575)
Q Consensus 199 VrIVk~LP~~~~~~~~~----------------------~~~~~~------------vp~~s~~~yY~------------ 232 (575)
|+||.- +++++.... .....+ .-...++.|-.
T Consensus 96 vpVI~m--eeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~~ 173 (408)
T 4ap5_A 96 IPVIEY--EQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLS 173 (408)
T ss_dssp SCEEEH--HHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEEE
T ss_pred CCeeEH--HHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeEE
Confidence 566531 111110000 000000 00000111100
Q ss_pred -----hhhhhhhhhc---ceEEEeccccccccC-CchHhhhhheeeeccccccchhHHHHHHHHHHHHHhcCCCceEEee
Q 008165 233 -----DQVLPILLRR---RVVQLTKFDYRLAND-LDEELQKMRCRVNYHALRFTKPIEELGQKLVMRMRSMAKRFIAVHL 303 (575)
Q Consensus 233 -----e~ilP~L~k~---~VI~l~~~d~RLa~~-lP~diQrLRCrvnF~ALrF~p~I~~Lg~~LV~RLR~~~~~fiALHL 303 (575)
..+-|.+.+. ..+-+..+...|++- -..+...+| ..|+|++.|.+.|++.++..-. ++|+++|+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L~--~~~~~~h~ 246 (408)
T 4ap5_A 174 VQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHLN--STDDADRI 246 (408)
T ss_dssp ECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHHC--CCTTTTTC
T ss_pred EeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHhC--cccceeec
Confidence 0112222221 112222222233322 113333332 4799999999999998887653 58999999
Q ss_pred ccchhhhhhhcccCCCCchHhHHHHHHHh-hhccCCCCCchhhccCCCCCCCHHHHH-HHHHHcCCCCCceEEEEecccc
Q 008165 304 RFEPDMLAFSGCYYGGGDKERYELGEIRK-RWATLPDLSPEGERKRGKCPLTPHEVG-LMLRALGFANDTHLYVASGEIY 381 (575)
Q Consensus 304 RfE~DMLAfsgC~~ggg~~E~~EL~~~R~-~w~~~~~i~~~~~R~~G~CPLTPeEVg-l~LrALGf~~~T~IYLAsgeiy 381 (575)
|...|+... |.......-. .+=- +|+. . +-......|=.+-++++ .+.+.+.=-+-+.||||+-+
T Consensus 247 r~~~dw~~~--~~~~~~~~~~----~y~~~H~Rr-~----d~~~~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~-- 313 (408)
T 4ap5_A 247 PFQEDWMKM--KVKLGSALGG----PYLGVHLRR-K----DFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDA-- 313 (408)
T ss_dssp CCCSSGGGC--CCCTTCBCCE----EEEEEEECC-T----TTTTTTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEECC--
T ss_pred ccchhHhhh--hcccccccCC----Ccccccccc-c----cchhhhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCCC--
Confidence 999888764 4432111000 0000 1111 0 00111223422333333 33333322244589999875
Q ss_pred CccccccchHhhCCCccccccCChhhccCCcCcccchhhhhhhhhcCCceeeecCCCcHHHHHhhhhcccCCcc
Q 008165 382 GGEETLRPLRELFPNFYTKEMLADEELKPFLQFSSRLAAIDYIVCDESDVFVTNNNGNMAKILAGRRRYMGHKR 455 (575)
Q Consensus 382 GG~~~L~pL~~~FPnl~tKe~La~eEL~pf~~~sS~lAALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G~~k 455 (575)
.+..+..|++.+|.++.-..- .+++..+. ...+|.||-+||.+||+||+|..++|+..|.=.|.+.|+..
T Consensus 314 -~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~--d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~ 383 (408)
T 4ap5_A 314 -VRKEYEELKKLLPEMVRFEPT-WEELELYK--DGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDP 383 (408)
T ss_dssp -CHHHHHHHHHHCTTEECCCCC-HHHHHHHH--HHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCG
T ss_pred -chhHHHHHHHhCCCcEEecCc-chhhhccC--cchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCC
Confidence 344567899999976533221 13344432 34579999999999999999999999999999999999763
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.11 E-value=8.9e-10 Score=114.62 Aligned_cols=282 Identities=19% Similarity=0.254 Sum_probs=162.6
Q ss_pred CCCcEEEEE-eCCCchhhHhhHhhHHHHHHHhcCcEEecccCCCCccc-CCCCCcccccHHHHHHHhccccceecc----
Q 008165 131 SSNGYLLIA-ASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWK-DDSDFANIFDVDHFISSLAKDVTIVKR---- 204 (575)
Q Consensus 131 ~snGYL~V~-~nGGLNQqR~~IcDaVaVARiLNATLViP~Ld~~s~Wk-D~S~F~DIFDvdhFI~sL~~dVrIVk~---- 204 (575)
.+||||+-= |-|-+.+|-....-+.+.|+.||.|||||-+-.-..-+ ---.|++.|+++. |+..-|||.-
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~~~~~~vpf~~yF~v~~----l~~yhrvi~me~Fm 81 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKHPETKMIPFEFLFQVGT----VAKYTRVVTMQEFT 81 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSSSSCEEECHHHHBCHHH----HTTTSCEECHHHHH
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccCCcccccchhheeecch----hhhhceeeeHHHHH
Confidence 579999885 99999999999999999999999999998654322211 0134888888765 3333344321
Q ss_pred --C-----chhHH------------hh-------cC-CCCc-------eecCCC---CCC----hhH----HHhhhhhh-
Q 008165 205 --V-----PDKVM------------RS-------ME-KPPY-------TMRVPR---KST----PEY----YLDQVLPI- 238 (575)
Q Consensus 205 --L-----P~~~~------------~~-------~~-~~~~-------~~~vp~---~s~----~~y----Y~e~ilP~- 238 (575)
| |++-. ++ ++ -+|+ .++..+ ..+ .+| |.++=...
T Consensus 82 ~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~~~~ 161 (362)
T 3zy2_A 82 KKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWLEKF 161 (362)
T ss_dssp HHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHHHHS
T ss_pred HHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHHHHhC
Confidence 1 11100 00 00 0111 111000 000 111 11111111
Q ss_pred -hhhcceEEEeccccccc-cCCchHhhhhheeeeccccccchhHHHHHHHHHHHHHhcCCCceEEeeccchhhhhhhccc
Q 008165 239 -LLRRRVVQLTKFDYRLA-NDLDEELQKMRCRVNYHALRFTKPIEELGQKLVMRMRSMAKRFIAVHLRFEPDMLAFSGCY 316 (575)
Q Consensus 239 -L~k~~VI~l~~~d~RLa-~~lP~diQrLRCrvnF~ALrF~p~I~~Lg~~LV~RLR~~~~~fiALHLRfE~DMLAfsgC~ 316 (575)
-.+|-|+.|++.-..-- ..---.||| -|+++++|.+.|++.++.-- .+||||+|||-=.|+.-. |.
T Consensus 162 p~~~~pVlAf~gaPa~FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L--~rpyVgIHLR~G~DW~~a--C~ 229 (362)
T 3zy2_A 162 PSEEYPVLAFSSAPAPFPSKGKVWSIQK--------YLRWSSRITEQAKKFISANL--AKPFVAVHLRNDADWVRV--CE 229 (362)
T ss_dssp CTTTCSEEEESSCSSCSSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHC--CSSEEEEEECCCHHHHHH--HH
T ss_pred CcccCceEeecCCCCCCCcChhhHhHHH--------hccccHHHHHHHHHHHHHhc--CCCeEEEEEecCCcHHHH--Hh
Confidence 13568888876532111 000123444 48999999999999888843 359999999999999876 87
Q ss_pred CCCCchHhHHHHHHHh--hhccC-CCCCchhhccCCCCCCCHHHH----HHHHHHcCCCCCceEEEEeccccCccccccc
Q 008165 317 YGGGDKERYELGEIRK--RWATL-PDLSPEGERKRGKCPLTPHEV----GLMLRALGFANDTHLYVASGEIYGGEETLRP 389 (575)
Q Consensus 317 ~ggg~~E~~EL~~~R~--~w~~~-~~i~~~~~R~~G~CPLTPeEV----gl~LrALGf~~~T~IYLAsgeiyGG~~~L~p 389 (575)
+--..+ -..+-.--+ -|... ..+. ...|==+.+++ ..+++.++.+ .||||+-.. ..+.-
T Consensus 230 hlk~~~-~~~lfaSPQC~Gy~~~~~~lt------~emClPSle~I~rqIk~~vk~~~lk---sVFIATDa~----~~~~E 295 (362)
T 3zy2_A 230 HIDTTT-NRPLFASEQCLGEGHHLGTLT------KEICSPSKQQILEQIVEKVGSIGAK---SVFVASDKD----HMIDE 295 (362)
T ss_dssp TCCTTT-CCCCTTTHHHHCGGGTTCCCC------HHHHSCCHHHHHHHHHHHHHHHTCS---EEEEEESSC----CCHHH
T ss_pred hhcccc-CcccccCCcccCCcccCcccc------hhccCCCHHHHHHHHHHHHHhcCCc---EEEEecCCH----HHHHH
Confidence 521100 000000000 01000 0000 12343344443 4455666654 999999653 35777
Q ss_pred hHhhCCCccccccCChhhccCCcCcccchhhhhhhhhcCCceeeecCCCcHHHHHhhhhcccC
Q 008165 390 LRELFPNFYTKEMLADEELKPFLQFSSRLAAIDYIVCDESDVFVTNNNGNMAKILAGRRRYMG 452 (575)
Q Consensus 390 L~~~FPnl~tKe~La~eEL~pf~~~sS~lAALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G 452 (575)
|+++|+.... .+-. +.| ..|+||.+||.+||+||+|..++|+..|.-.|--.|
T Consensus 296 Lk~~L~~~~v--~vv~--~~p------e~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 296 INEALKPYEI--EAHR--QEP------DDMYTSLAIMGRADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp HHHHHGGGTC--CEEC--CSS------CCHHHHHHHHHHSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred HHHHhhccCc--eEEE--eCC------chhHHHHHHHHhCCEeecCccccccHHHHHHHHhcC
Confidence 8888864211 1111 111 179999999999999999999999999999999888
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.44 E-value=0.008 Score=65.54 Aligned_cols=251 Identities=14% Similarity=0.164 Sum_probs=138.6
Q ss_pred CcEEEEEe--CCCchhhHhhHhhHHHHHHHhcCcEEecccCCCCcccC-CCCCcccccHHHHHHHhccccceeccCchhH
Q 008165 133 NGYLLIAA--SGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKD-DSDFANIFDVDHFISSLAKDVTIVKRVPDKV 209 (575)
Q Consensus 133 nGYL~V~~--nGGLNQqR~~IcDaVaVARiLNATLViP~Ld~~s~WkD-~S~F~DIFDvdhFI~sL~~dVrIVk~LP~~~ 209 (575)
..||+... ..|+.-+-..++-+..+|-.+|.||||-.=. |.= ...|+++|.. +...+... |.
T Consensus 145 aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P--~s~~C~~~-------~~-- 209 (526)
T 2de0_X 145 AKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP--VSETCTDR-------SG-- 209 (526)
T ss_dssp SCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC--SCSSCCCC-------CC--
T ss_pred CCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC--cCccccCC-------Cc--
Confidence 47888876 5799999889999999999999999994432 331 2478888864 11111110 00
Q ss_pred HhhcCCCCceecCCCCCChhHHHhhhhhhhhhcceEEEecccc--c---ccc-CCchH----hhhhhee--------eec
Q 008165 210 MRSMEKPPYTMRVPRKSTPEYYLDQVLPILLRRRVVQLTKFDY--R---LAN-DLDEE----LQKMRCR--------VNY 271 (575)
Q Consensus 210 ~~~~~~~~~~~~vp~~s~~~yY~e~ilP~L~k~~VI~l~~~d~--R---La~-~lP~d----iQrLRCr--------vnF 271 (575)
.. .++ |..... -..+.||.+...++ + ... .+|.+ ++++.-. +.-
T Consensus 210 -----~~----~~~-w~~~~~--------~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~q~~~ 271 (526)
T 2de0_X 210 -----IS----TGH-WSGEVK--------DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVK 271 (526)
T ss_dssp -----SC----CCB-CCCTTG--------GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHHHHHH
T ss_pred -----cc----cCC-CCCccc--------CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHHHHHHH
Confidence 00 011 111100 12345554332221 1 111 24433 3444210 011
Q ss_pred cccccchhHHHHHHHHHHHHHhcCCCceEEeeccchhhhhhhcccCCCCchHhHHHHHHHhhhccCCCCCchhhccCCCC
Q 008165 272 HALRFTKPIEELGQKLVMRMRSMAKRFIAVHLRFEPDMLAFSGCYYGGGDKERYELGEIRKRWATLPDLSPEGERKRGKC 351 (575)
Q Consensus 272 ~ALrF~p~I~~Lg~~LV~RLR~~~~~fiALHLRfE~DMLAfsgC~~ggg~~E~~EL~~~R~~w~~~~~i~~~~~R~~G~C 351 (575)
.-+|++++|++.-+.+.+.+.- ++|.|+||.|-= |-++.-. .+. .-++- +.... .|.
T Consensus 272 yl~rP~~~i~~~I~~~~~~l~~-~~piVGVHIRrG-Dk~~~E~-~~~-~~~~Y--~~~v~-~~~---------------- 328 (526)
T 2de0_X 272 YLIRPQPWLEKEIEEATKKLGF-KHPVIGVHVRRT-DKVGTEA-AFH-PIEEY--MVHVE-EHF---------------- 328 (526)
T ss_dssp HHTCBCHHHHHHHHHHHHHHTC-CSSEEEEEECCC------CC-CSC-SHHHH--HHHHH-HHH----------------
T ss_pred HHcCCCHHHHHHHHHHHHHhCC-CCCEEEEEEeCC-CCCcccc-ccC-CHHHH--HHHHH-HHH----------------
Confidence 1378999999999999888754 679999999963 3322100 000 00110 00000 111
Q ss_pred CCCHHHHHHHHHHcCCCCCceEEEEeccccCccccccchHhhCCCc--cccccCCh-hhc-cCCcCcccchhhhhhhhhc
Q 008165 352 PLTPHEVGLMLRALGFANDTHLYVASGEIYGGEETLRPLRELFPNF--YTKEMLAD-EEL-KPFLQFSSRLAAIDYIVCD 427 (575)
Q Consensus 352 PLTPeEVgl~LrALGf~~~T~IYLAsgeiyGG~~~L~pL~~~FPnl--~tKe~La~-eEL-~pf~~~sS~lAALDYiVcl 427 (575)
..|+.......+.||||+.+ ...++-+++.||+. ++-..... ..+ ..+...+-+.+.+|.++.+
T Consensus 329 --------~~l~~~~~~~~~~ifLATDD----p~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs 396 (526)
T 2de0_X 329 --------QLLARRMQVDKKRVYLATDD----PSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLS 396 (526)
T ss_dssp --------HHHHTTSCCSSCEEEEEESC----HHHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHH
T ss_pred --------HHHHhhcCCCCCeEEEEcCC----HHHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHh
Confidence 11233346778899999987 24566778889985 32221111 111 1111111135789999999
Q ss_pred CCceeeecCCCcHHHHHhhhhccc
Q 008165 428 ESDVFVTNNNGNMAKILAGRRRYM 451 (575)
Q Consensus 428 ~SDVFV~t~~GNfa~~V~GhR~y~ 451 (575)
+||+||++.++||++++...|.-.
T Consensus 397 ~cd~~Vgt~sS~~srla~~l~~~~ 420 (526)
T 2de0_X 397 QADFLVCTFSSQVCRVAYEIMQTL 420 (526)
T ss_dssp HSSEEEECTTSHHHHHHHHHHTTS
T ss_pred cCCeeecCCCCHHHHHHHHHhcCc
Confidence 999999999999999988766443
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.12 E-value=0.006 Score=61.17 Aligned_cols=264 Identities=15% Similarity=0.157 Sum_probs=124.8
Q ss_pred CCcEEEEEeCCCchhhHhhHhhHHHHHHHhcCcEEecccCCCCcccCCCCCcccccHHHHHHHhccc--cceecc-Cchh
Q 008165 132 SNGYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKDDSDFANIFDVDHFISSLAKD--VTIVKR-VPDK 208 (575)
Q Consensus 132 snGYL~V~~nGGLNQqR~~IcDaVaVARiLNATLViP~Ld~~s~WkD~S~F~DIFDvdhFI~sL~~d--VrIVk~-LP~~ 208 (575)
+..||++...|||.+|=-+++.|.++|...|.+|+|--.. ..|-. ..|.+.| ...|. ....- ..+... .|..
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~~--~~~~~~f-p~~F~-~v~~~~~~~~~~~~~~~~ 77 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYVE--QPFSNAF-PAFFE-PVEDIAGVPVICDDRVNQ 77 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTCS--STTSBSH-HHHBC-CCSEETTEEEECSGGGGT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccCC--CCccccC-ccccc-chhhhcccceeccccccc
Confidence 4679999999999999999999999999999998886443 22322 3466666 22232 11100 000000 0000
Q ss_pred HHhhcCCCCceecCCCCCCh---hHH--Hhhhhh-------hhh--hc-ceEEEeccccccccCCchHhhhhheeeeccc
Q 008165 209 VMRSMEKPPYTMRVPRKSTP---EYY--LDQVLP-------ILL--RR-RVVQLTKFDYRLANDLDEELQKMRCRVNYHA 273 (575)
Q Consensus 209 ~~~~~~~~~~~~~vp~~s~~---~yY--~e~ilP-------~L~--k~-~VI~l~~~d~RLa~~lP~diQrLRCrvnF~A 273 (575)
...+..+-++.|... ..| .+++.| ++. .+ ....+.+. ..+-...-.++ -..-|.-
T Consensus 78 -----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~w~~~~~~----~~~i~~y 147 (330)
T 2hhc_A 78 -----LSFPGPFFPRWWNRPSIDCINRPDEQIFRERDELTELFQAREDSEANTIVCD-ACLMWRCSEEA----ERLIFRN 147 (330)
T ss_dssp -----CCCCSSEESGGGGSCGGGGSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEEC-SCCTTSSCHHH----HHHHHHH
T ss_pred -----ccCCCCcCchhhhccccccccChHHhhhhhhhhhhhhhhhhhccCCCeEEcc-cccccchhhhh----HHHHHhc
Confidence 000000000000000 001 122222 111 11 10122221 01110100111 1112467
Q ss_pred cccchhHHHHHHHHHHHHHhcCCCceEEeeccchhhhhhhcccCCCCchHhHHHHHHHhhhccCCCCCchhhccCCCCCC
Q 008165 274 LRFTKPIEELGQKLVMRMRSMAKRFIAVHLRFEPDMLAFSGCYYGGGDKERYELGEIRKRWATLPDLSPEGERKRGKCPL 353 (575)
Q Consensus 274 LrF~p~I~~Lg~~LV~RLR~~~~~fiALHLRfE~DMLAfsgC~~ggg~~E~~EL~~~R~~w~~~~~i~~~~~R~~G~CPL 353 (575)
|+++++|++..+++.+.+-. +.++|+||.|.=.+. ..|.++..-++. .||
T Consensus 148 l~p~~~i~~~i~~~~~~~~~-~~~~VGVHIRrgD~~---~~~~~~~~~~~~-------------------------~~~- 197 (330)
T 2hhc_A 148 IKLRSEIRARIDALYEEHFS-GHSIIGVHVRHGNGE---DIMEHAPYWADS-------------------------ELA- 197 (330)
T ss_dssp SCBCHHHHHHHHHHHHHHTT-TSEEEEEEECC---------------CHHH-------------------------HHH-
T ss_pred CCccHHHHHHHHHHHHHhcc-CCceEEEEEecCCCC---cccccCcchHHH-------------------------hHH-
Confidence 89999999999888765422 358999999964321 123221100000 011
Q ss_pred CHHHHHHHHHHc-C-CC-CCceEEEEeccccCccccccchHhhCCCcccc--ccCCh--hhcc-CCcCc-ccchhhhhhh
Q 008165 354 TPHEVGLMLRAL-G-FA-NDTHLYVASGEIYGGEETLRPLRELFPNFYTK--EMLAD--EELK-PFLQF-SSRLAAIDYI 424 (575)
Q Consensus 354 TPeEVgl~LrAL-G-f~-~~T~IYLAsgeiyGG~~~L~pL~~~FPnl~tK--e~La~--eEL~-pf~~~-sS~lAALDYi 424 (575)
-+++-.-++.+ . .+ .++.||||+-+. .-++-|++.||++.+- +.... ..+. +..+. ..+.+.+|.+
T Consensus 198 -l~~~~~~i~~~~~~~~~~~~~vfvaSDd~----~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~Dm~ 272 (330)
T 2hhc_A 198 -LHQVCMAIRKAKALSYPKPVKVFLCTDSA----QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGGASALIDMY 272 (330)
T ss_dssp -HHHHHHHHHHHHTSCCSSCEEEEEEESCH----HHHHHHHHHSTTEECCCC-----------CHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhccCcCceEEEEEeCCH----HHHHHHHHHcCCcccccceeecccccccccCchhhccchHHHHHHH
Confidence 11111111111 1 22 468999999985 3467789999984332 11111 0000 00000 1245789999
Q ss_pred hhcCCceee-ecCCCcHHHHHh
Q 008165 425 VCDESDVFV-TNNNGNMAKILA 445 (575)
Q Consensus 425 Vcl~SDVFV-~t~~GNfa~~V~ 445 (575)
....||.+| +...++|+...+
T Consensus 273 LLS~cd~~I~~~~~STFs~~aa 294 (330)
T 2hhc_A 273 LLARCATVIRFPPTSAFTRYAR 294 (330)
T ss_dssp HHTTCSEEEEESTTCGGGHHHH
T ss_pred HHHcCCeeEECCCCCCHHHHHH
Confidence 999999999 545777776655
No 5
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=33.74 E-value=20 Score=27.41 Aligned_cols=26 Identities=35% Similarity=0.689 Sum_probs=20.6
Q ss_pred ccccchhHHHHHHHHHHHHHhcCCCce
Q 008165 273 ALRFTKPIEELGQKLVMRMRSMAKRFI 299 (575)
Q Consensus 273 ALrF~p~I~~Lg~~LV~RLR~~~~~fi 299 (575)
++-|+.-+.++|.++|+||++ |..|.
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKt-Ge~Ff 27 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRS-GERFL 27 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT-TCCHH
T ss_pred CccHHHHHHHHHHHHHHHHHc-cccHH
Confidence 456788899999999999997 44443
No 6
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=23.08 E-value=30 Score=31.07 Aligned_cols=19 Identities=42% Similarity=0.670 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHcCCCCCc
Q 008165 353 LTPHEVGLMLRALGFANDT 371 (575)
Q Consensus 353 LTPeEVgl~LrALGf~~~T 371 (575)
|-|.||+.+|...||..+.
T Consensus 3 LRPDEVArVLEk~GF~~D~ 21 (124)
T 2g7j_A 3 LRPDEVARVLEKAGFTVDV 21 (124)
T ss_dssp CCHHHHHHHHHHTTCEEEE
T ss_pred cChHHHHHHHHHcCceEEE
Confidence 7799999999999998554
No 7
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=20.19 E-value=18 Score=28.62 Aligned_cols=49 Identities=24% Similarity=0.415 Sum_probs=30.8
Q ss_pred cccccchHhhCCCccccccCChhhccCCcCcccchhhhhhhhhcCCceeeecC
Q 008165 384 EETLRPLRELFPNFYTKEMLADEELKPFLQFSSRLAAIDYIVCDESDVFVTNN 436 (575)
Q Consensus 384 ~~~L~pL~~~FPnl~tKe~La~eEL~pf~~~sS~lAALDYiVcl~SDVFV~t~ 436 (575)
+..+.-|++|||++ +++.+.. -|.. +..+..+|||-...+..+-|=|++
T Consensus 10 ee~l~~L~emFP~l-d~~~I~~-vL~a--~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 10 EEDLKAIQDMFPNM-DQEVIRS-VLEA--QRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSS-CHHHHHH-HHTT--TTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCC-CHHHHHH-HHHH--cCCCHHHHHHHHHcCcCCCCCCCC
Confidence 45678899999987 3333322 1111 124456899988888877665554
No 8
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=20.16 E-value=1e+02 Score=27.61 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHcCCCCCceEEEEecc
Q 008165 350 KCPLTPHEVGLMLRALGFANDTHLYVASGE 379 (575)
Q Consensus 350 ~CPLTPeEVgl~LrALGf~~~T~IYLAsge 379 (575)
.||||+||+...|+.|--+.+ ..||...+
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~i~r 45 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeeeehh
Confidence 799999999999999886643 55555443
No 9
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=16.58 E-value=2.2e+02 Score=29.32 Aligned_cols=75 Identities=12% Similarity=0.233 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhc---------CCCceEEeeccchhhhhhhcccCCCCchHhHHHHHHHhhhccCCCCCchhhccCCCCC
Q 008165 282 ELGQKLVMRMRSM---------AKRFIAVHLRFEPDMLAFSGCYYGGGDKERYELGEIRKRWATLPDLSPEGERKRGKCP 352 (575)
Q Consensus 282 ~Lg~~LV~RLR~~---------~~~fiALHLRfE~DMLAfsgC~~ggg~~E~~EL~~~R~~w~~~~~i~~~~~R~~G~CP 352 (575)
.+++.||+++++. .+|=+-+|+++.+|.+.++--..|.+- .|+-|+ ...|.-|
T Consensus 123 ~vkdAI~d~~~~~~~~rp~vd~~~Pd~~i~v~l~~~~~~~~ld~sg~~L--------~krgyr----------~~~~~Ap 184 (393)
T 3k0b_A 123 IVKKAIVNRVSEKYRRSGRLMETGALFKLEVSILKDEVTLTIDTSGAGL--------HKRGYR----------LAQGSAP 184 (393)
T ss_dssp HHHHHHHHHHHHHTTTCTTCCSCSSBCCEEEEEETTEEEEEEESSSSCT--------TCCSTT----------TTSCSCS
T ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCCEEEEEEEECCEEEEEEecCCCcc--------cccccc----------cCCCCCC
Confidence 4788899999874 236677888888887776532222111 111232 2368899
Q ss_pred CCHHHHHHHHHHcCCCCCceEE
Q 008165 353 LTPHEVGLMLRALGFANDTHLY 374 (575)
Q Consensus 353 LTPeEVgl~LrALGf~~~T~IY 374 (575)
|.+.=.+.||...|++.+..|+
T Consensus 185 l~e~lAa~ll~l~~~~~~~~vl 206 (393)
T 3k0b_A 185 IKETMAAALVLLTSWHPDRPFY 206 (393)
T ss_dssp CCHHHHHHHHHHSCCCTTSCEE
T ss_pred CcHHHHHHHHHHhCCCCCCeEE
Confidence 9988888999999998776554
No 10
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=15.49 E-value=99 Score=23.88 Aligned_cols=19 Identities=16% Similarity=-0.022 Sum_probs=16.9
Q ss_pred CCCCCCCHHHHHHHHHHcC
Q 008165 348 RGKCPLTPHEVGLMLRALG 366 (575)
Q Consensus 348 ~G~CPLTPeEVgl~LrALG 366 (575)
+...|.|+||..+|++++-
T Consensus 10 ~~~~~WT~eE~~~F~~~~~ 28 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFI 28 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHH
Confidence 6778999999999999874
Done!