Query 008165
Match_columns 575
No_of_seqs 213 out of 399
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 19:41:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008165.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008165hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ihoa2 d.3.1.18 (A:156-293) A 34.5 2.5 0.00018 36.3 -1.2 36 164-199 31-71 (138)
2 d1l5ia_ d.89.1.4 (A:) DNA-bind 29.7 24 0.0018 29.6 4.3 29 350-379 17-45 (118)
3 d1vjna_ d.157.1.4 (A:) Hypothe 21.4 53 0.0039 28.5 5.2 54 135-197 130-184 (209)
4 d2g7ja1 d.198.5.1 (A:1-112) Pu 19.6 19 0.0014 29.8 1.5 18 353-370 3-20 (112)
5 d2gh1a1 c.66.1.49 (A:13-293) M 18.4 23 0.0017 32.0 2.1 93 267-369 97-189 (281)
6 d1okga1 c.46.1.2 (A:7-162) 3-m 15.4 75 0.0055 26.9 4.6 29 348-376 66-95 (156)
7 d1oqya2 a.5.2.1 (A:317-360) DN 14.3 12 0.00089 26.7 -0.8 26 354-379 1-30 (44)
8 d2fr5a1 c.97.1.1 (A:11-146) mo 13.5 54 0.0039 27.3 3.0 99 298-405 27-134 (136)
9 d1vlma_ c.66.1.41 (A:) Possibl 13.4 2.4E+02 0.017 22.9 7.4 81 263-368 90-170 (208)
10 d1vpqa_ c.1.32.1 (A:) Hypothet 13.1 82 0.0059 28.6 4.5 27 228-254 148-174 (260)
No 1
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=34.50 E-value=2.5 Score=36.34 Aligned_cols=36 Identities=31% Similarity=0.540 Sum_probs=30.1
Q ss_pred cEEecccCCCCcccCC-----CCCcccccHHHHHHHhcccc
Q 008165 164 TLVVPELDHHSYWKDD-----SDFANIFDVDHFISSLAKDV 199 (575)
Q Consensus 164 TLViP~Ld~~s~WkD~-----S~F~DIFDvdhFI~sL~~dV 199 (575)
-||+|...-++.|+++ ..=+.|||-|.|--..+.-|
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHHH
Confidence 3899999999999987 34568999999998887664
No 2
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=29.66 E-value=24 Score=29.58 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHcCCCCCceEEEEecc
Q 008165 350 KCPLTPHEVGLMLRALGFANDTHLYVASGE 379 (575)
Q Consensus 350 ~CPLTPeEVgl~LrALGf~~~T~IYLAsge 379 (575)
+|||||||+...|+.|=-+.+. .||..++
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~r 45 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEcc
Confidence 6999999999999998766555 4665443
No 3
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=21.39 E-value=53 Score=28.53 Aligned_cols=54 Identities=31% Similarity=0.538 Sum_probs=34.6
Q ss_pred EEEEEeCCCchhhHhhHhhHHHHHHHhcCcEEecccCCCCcccC-CCCCcccccHHHHHHHhcc
Q 008165 135 YLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKD-DSDFANIFDVDHFISSLAK 197 (575)
Q Consensus 135 YL~V~~nGGLNQqR~~IcDaVaVARiLNATLViP~Ld~~s~WkD-~S~F~DIFDvdhFI~sL~~ 197 (575)
.+.+.+.|.. ...--+|+.+|+.|++-.|||- -|.. ...| ++=.+|.|++.++.
T Consensus 130 va~lpigg~~---~m~~~ea~~~~~~l~pk~viP~-----H~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 130 VLLVPVGGTY---TIGPKEAKEVADLLNAKVIIPM-----HYKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp EEEEECCSSS---SCCHHHHHHHHHHTTCSEEEEE-----SCCCSSCCT-TCCCTHHHHTTSSC
T ss_pred EEEEecCCcc---ccCHHHHHHHHHHhCCCEEEEe-----ccCCccccc-CcCCHHHHHHHhhh
Confidence 4555554432 2356789999999999999994 2322 2222 34557888877663
No 4
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=19.63 E-value=19 Score=29.80 Aligned_cols=18 Identities=44% Similarity=0.707 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHcCCCCC
Q 008165 353 LTPHEVGLMLRALGFAND 370 (575)
Q Consensus 353 LTPeEVgl~LrALGf~~~ 370 (575)
|-|.||+.+|...||..+
T Consensus 3 LRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 779999999999999754
No 5
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}
Probab=18.40 E-value=23 Score=32.02 Aligned_cols=93 Identities=18% Similarity=0.273 Sum_probs=55.7
Q ss_pred eeeeccccccchhHHHHHHHHHHHHHhcCCCceEEeeccchhhhhhhcccCCCCchHhHHHHHHHhhhccCCCCCchhhc
Q 008165 267 CRVNYHALRFTKPIEELGQKLVMRMRSMAKRFIAVHLRFEPDMLAFSGCYYGGGDKERYELGEIRKRWATLPDLSPEGER 346 (575)
Q Consensus 267 CrvnF~ALrF~p~I~~Lg~~LV~RLR~~~~~fiALHLRfE~DMLAfsgC~~ggg~~E~~EL~~~R~~w~~~~~i~~~~~R 346 (575)
.-++.++|...++.+.+-+++.+.|+. +|.++....-+..++..+ ...+....+...+....+.|. ...+
T Consensus 97 ~v~~~~~l~~~~d~~~~l~~~~~~Lkp-gG~lii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~ 166 (281)
T d2gh1a1 97 IAICHAFLLHMTTPETMLQKMIHSVKK-GGKIICFEPHWISNMASY--LLDGEKQSEFIQLGVLQKLFE-------SDTQ 166 (281)
T ss_dssp EEEEESCGGGCSSHHHHHHHHHHTEEE-EEEEEEEECCHHHHHTSE--EETTSCHHHHCCHHHHHHHHH-------HHHH
T ss_pred EEEEehhhhcCCCHHHHHHHHHHHcCc-CcEEEEEECCccccchhh--ccCchhhhhhhhHHHHHHHHH-------HHHH
Confidence 445567777778888887888877775 567777655544455544 222222222222222222221 1223
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCC
Q 008165 347 KRGKCPLTPHEVGLMLRALGFAN 369 (575)
Q Consensus 347 ~~G~CPLTPeEVgl~LrALGf~~ 369 (575)
..|..|....++..+|+..||.+
T Consensus 167 ~~~~~~~i~~~l~~~l~eaGf~~ 189 (281)
T d2gh1a1 167 RNGKDGNIGMKIPIYLSELGVKN 189 (281)
T ss_dssp TTCCCTTGGGTHHHHHHHTTCEE
T ss_pred HcCCCCCHHHHHHHHHHHcCCeE
Confidence 46777777788889999999984
No 6
>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}
Probab=15.39 E-value=75 Score=26.92 Aligned_cols=29 Identities=21% Similarity=0.126 Sum_probs=23.1
Q ss_pred CCCCCC-CHHHHHHHHHHcCCCCCceEEEE
Q 008165 348 RGKCPL-TPHEVGLMLRALGFANDTHLYVA 376 (575)
Q Consensus 348 ~G~CPL-TPeEVgl~LrALGf~~~T~IYLA 376 (575)
.|.=|| ++++....|+++|++++|.|-|=
T Consensus 66 ~~~~~lP~~~~~~~~l~~lGI~~~~~VVvY 95 (156)
T d1okga1 66 TARHPLPPCAEFIDWCMANGMAGELPVLCY 95 (156)
T ss_dssp CCSSCCCCHHHHHHHHHHTTCSSSSCEEEE
T ss_pred CCccccCCHHHHHHHHHhccccCCceEEEE
Confidence 343344 78999999999999999988774
No 7
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.28 E-value=12 Score=26.71 Aligned_cols=26 Identities=38% Similarity=0.588 Sum_probs=17.9
Q ss_pred CHHHHH--HHHHHcCCCCCc--eEEEEecc
Q 008165 354 TPHEVG--LMLRALGFANDT--HLYVASGE 379 (575)
Q Consensus 354 TPeEVg--l~LrALGf~~~T--~IYLAsge 379 (575)
||+|.. .=|.+|||+++. .+|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 566654 347799999887 45766554
No 8
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.45 E-value=54 Score=27.35 Aligned_cols=99 Identities=21% Similarity=0.303 Sum_probs=56.2
Q ss_pred ceEEeeccchhhhhhhcccC-----C-CCchHhHHHHHHHhhhccCCCCCch--hhccCCCCCCCHHHH-HHHHHHcCCC
Q 008165 298 FIAVHLRFEPDMLAFSGCYY-----G-GGDKERYELGEIRKRWATLPDLSPE--GERKRGKCPLTPHEV-GLMLRALGFA 368 (575)
Q Consensus 298 fiALHLRfE~DMLAfsgC~~-----g-gg~~E~~EL~~~R~~w~~~~~i~~~--~~R~~G~CPLTPeEV-gl~LrALGf~ 368 (575)
-|+-=++.+ |=-.|+||.- + +--.|+-.+.++-..- .+.+..- .....+. +++|=-. -.+|..+ .
T Consensus 27 ~VGAa~~~~-dG~i~~G~NvEnasy~~~iCAEr~Ai~~a~~~g--~~~~~~~~~~~~~~~~-~~~PCG~CRQ~l~E~--~ 100 (136)
T d2fr5a1 27 PVGAALLTG-DGRIFSGCNIENACYPLGVCAERTAIQKAISEG--YKDFRAIAISSDLQEE-FISPCGACRQVMREF--G 100 (136)
T ss_dssp CEEEEEEET-TSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT--CCCEEEEEEEESCSSS-CCCCCHHHHHHHHHT--C
T ss_pred cEEEEEEeC-CCCEEEEEeecccccccccchhheeeeeeeccC--CccEEEEEeecccCCC-CCCcchhhhHHHHhh--C
Confidence 365666766 5566777652 1 3356777777654311 1111100 0000111 2333221 2455664 5
Q ss_pred CCceEEEEeccccCccccccchHhhCCCccccccCCh
Q 008165 369 NDTHLYVASGEIYGGEETLRPLRELFPNFYTKEMLAD 405 (575)
Q Consensus 369 ~~T~IYLAsgeiyGG~~~L~pL~~~FPnl~tKe~La~ 405 (575)
.++.||+...+ |+.....|.++.|.-++++.|-.
T Consensus 101 ~~~~i~~~~~~---~~~~~~tl~eLLP~~F~~~~L~~ 134 (136)
T d2fr5a1 101 TDWAVYMTKPD---GTFVVRTVQELLPASFGPEDLQK 134 (136)
T ss_dssp SSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGGTC
T ss_pred CCceEEEECCC---CCEEEeEHHHhCcCCCChHHhCc
Confidence 68899998776 66667789999999999988754
No 9
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}
Probab=13.45 E-value=2.4e+02 Score=22.93 Aligned_cols=81 Identities=14% Similarity=0.127 Sum_probs=47.8
Q ss_pred hhhheeeeccccccchhHHHHHHHHHHHHHhcCCCceEEeeccchhhhhhhcccCCCCchHhHHHHHHHhhhccCCCCCc
Q 008165 263 QKMRCRVNYHALRFTKPIEELGQKLVMRMRSMAKRFIAVHLRFEPDMLAFSGCYYGGGDKERYELGEIRKRWATLPDLSP 342 (575)
Q Consensus 263 QrLRCrvnF~ALrF~p~I~~Lg~~LV~RLR~~~~~fiALHLRfE~DMLAfsgC~~ggg~~E~~EL~~~R~~w~~~~~i~~ 342 (575)
...-+-++.++|.+.++.++.-+.+.+.|+. +|.++..-+-.+ +.+. ......|... ..
T Consensus 90 ~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~p-gG~l~i~~~~~~-~~~~----------------~~~~~~~~~~--~~- 148 (208)
T d1vlma_ 90 ESFDFALMVTTICFVDDPERALKEAYRILKK-GGYLIVGIVDRE-SFLG----------------REYEKNKEKS--VF- 148 (208)
T ss_dssp TCEEEEEEESCGGGSSCHHHHHHHHHHHEEE-EEEEEEEEECSS-SHHH----------------HHHHHTTTC---CC-
T ss_pred ccccccccccccccccccccchhhhhhcCCC-CceEEEEecCCc-chhH----------------Hhhhhccccc--cc-
Confidence 4455667788899999999888888888875 455554332111 1110 0011112110 00
Q ss_pred hhhccCCCCCCCHHHHHHHHHHcCCC
Q 008165 343 EGERKRGKCPLTPHEVGLMLRALGFA 368 (575)
Q Consensus 343 ~~~R~~G~CPLTPeEVgl~LrALGf~ 368 (575)
..+...+|++|+.-+|+..||.
T Consensus 149 ----~~~~~~~s~~~l~~~l~~~Gf~ 170 (208)
T d1vlma_ 149 ----YKNARFFSTEELMDLMRKAGFE 170 (208)
T ss_dssp ----STTCCCCCHHHHHHHHHHTTCE
T ss_pred ----cccccCCCHHHHHHHHHHcCCe
Confidence 1223348999999999999996
No 10
>d1vpqa_ c.1.32.1 (A:) Hypothetical protein TM1631 {Thermotoga maritima [TaxId: 2336]}
Probab=13.08 E-value=82 Score=28.64 Aligned_cols=27 Identities=7% Similarity=0.066 Sum_probs=20.1
Q ss_pred hhHHHhhhhhhhhhcceEEEecccccc
Q 008165 228 PEYYLDQVLPILLRRRVVQLTKFDYRL 254 (575)
Q Consensus 228 ~~yY~e~ilP~L~k~~VI~l~~~d~RL 254 (575)
++|+.+.+.-.|+++||+.+.--...+
T Consensus 148 ~sW~~~~~~~~L~~~~v~~V~~D~p~~ 174 (260)
T d1vpqa_ 148 YSWDREETYEFLRNHGITFVVVDEPKL 174 (260)
T ss_dssp GGGCSHHHHHHHHHHTCEEEEEECCCC
T ss_pred chhccHHHHHHHHHcCCEEEEECCCCC
Confidence 356778888999999999876444444
Done!