Query 008166
Match_columns 575
No_of_seqs 211 out of 651
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 20:19:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1362 Choline transporter-li 100.0 7.8E-64 1.7E-68 550.3 34.3 364 186-554 140-558 (577)
2 PF04515 Choline_transpo: Plas 100.0 8.1E-59 1.8E-63 486.7 27.7 289 253-541 2-329 (334)
3 KOG1924 RhoA GTPase effector D 97.8 1.4E-05 3E-10 89.9 3.9 19 273-291 795-813 (1102)
4 KOG1924 RhoA GTPase effector D 97.5 0.00014 3E-09 82.1 6.1 21 551-571 1046-1066(1102)
5 PRK15319 AIDA autotransporter- 95.7 0.011 2.4E-07 73.1 5.1 9 353-361 1844-1852(2039)
6 PHA03247 large tegument protei 94.5 0.05 1.1E-06 69.2 5.9 18 271-288 3121-3138(3151)
7 PRK15319 AIDA autotransporter- 93.8 0.069 1.5E-06 66.4 5.0 6 136-141 1723-1728(2039)
8 PF11081 DUF2890: Protein of u 91.9 0.37 8.1E-06 47.0 6.2 14 142-155 121-134 (187)
9 KOG3671 Actin regulatory prote 91.8 0.29 6.3E-06 53.8 5.7 15 99-113 403-417 (569)
10 KOG0162 Myosin class I heavy c 91.5 0.37 8E-06 55.2 6.5 21 56-76 963-983 (1106)
11 KOG1923 Rac1 GTPase effector F 91.4 0.33 7.3E-06 55.8 6.1 9 507-515 719-727 (830)
12 KOG3895 Synaptic vesicle prote 91.4 0.39 8.5E-06 50.9 6.1 47 90-138 420-466 (488)
13 COG5178 PRP8 U5 snRNP spliceos 90.6 0.18 3.8E-06 60.0 3.0 15 123-137 18-32 (2365)
14 KOG0391 SNF2 family DNA-depend 89.6 0.5 1.1E-05 56.9 5.5 21 98-118 1895-1915(1958)
15 PRK09752 adhesin; Provisional 89.5 0.33 7.2E-06 58.6 4.1 11 352-362 1062-1072(1250)
16 KOG0559 Dihydrolipoamide succi 87.5 2.4 5.2E-05 45.3 8.3 18 37-54 123-140 (457)
17 PRK15313 autotransport protein 87.4 0.81 1.8E-05 54.3 5.4 10 352-361 755-764 (955)
18 PRK15313 autotransport protein 85.9 1 2.2E-05 53.5 5.0 7 152-158 640-646 (955)
19 COG5178 PRP8 U5 snRNP spliceos 85.4 0.62 1.3E-05 55.7 3.0 9 288-296 235-243 (2365)
20 KOG1830 Wiskott Aldrich syndro 82.5 4.5 9.7E-05 44.0 7.7 14 88-101 303-316 (518)
21 KOG2391 Vacuolar sorting prote 81.3 2.3 5E-05 45.0 5.0 22 56-77 115-141 (365)
22 KOG1785 Tyrosine kinase negati 80.0 2.7 5.9E-05 45.3 5.0 9 111-119 523-531 (563)
23 KOG0566 Inositol-1,4,5-triphos 78.2 4.3 9.3E-05 48.2 6.3 6 71-76 992-997 (1080)
24 KOG4849 mRNA cleavage factor I 77.8 5.2 0.00011 42.5 6.3 17 61-77 214-230 (498)
25 KOG1922 Rho GTPase effector BN 77.5 6.7 0.00015 46.9 8.1 18 78-95 305-322 (833)
26 PTZ00438 gamete antigen 27/25- 77.0 1.1 2.4E-05 45.7 1.1 30 9-43 102-131 (374)
27 PRK14950 DNA polymerase III su 73.9 4.7 0.0001 46.3 5.3 9 66-74 354-362 (585)
28 PF05750 Rubella_Capsid: Rubel 72.8 3.4 7.3E-05 40.2 3.2 9 111-119 100-108 (300)
29 PRK05733 single-stranded DNA-b 72.3 7.3 0.00016 37.8 5.3 38 33-71 71-111 (172)
30 PF11179 DUF2967: Protein of u 71.6 3.5 7.6E-05 40.2 3.0 13 48-60 89-101 (258)
31 KOG1925 Rac1 GTPase effector F 71.2 8.4 0.00018 42.9 6.0 33 4-37 148-180 (817)
32 PF03154 Atrophin-1: Atrophin- 70.6 14 0.00029 44.4 7.9 15 550-564 737-751 (982)
33 KOG0639 Transducin-like enhanc 70.0 16 0.00034 40.9 7.7 23 59-81 243-265 (705)
34 PRK13335 superantigen-like pro 69.4 6.8 0.00015 41.5 4.7 6 42-47 85-90 (356)
35 PHA03211 serine/threonine kina 69.1 5.5 0.00012 44.3 4.3 13 528-540 432-444 (461)
36 KOG4849 mRNA cleavage factor I 68.7 6.5 0.00014 41.8 4.4 9 72-80 243-251 (498)
37 KOG1925 Rac1 GTPase effector F 68.3 5.8 0.00013 44.1 4.1 14 89-102 229-242 (817)
38 PRK13855 type IV secretion sys 67.9 15 0.00033 39.8 7.0 21 33-53 12-32 (376)
39 PRK06863 single-stranded DNA-b 65.0 10 0.00023 36.6 4.8 44 32-75 69-112 (168)
40 PF05518 Totivirus_coat: Totiv 64.4 23 0.0005 41.5 8.1 11 72-82 680-690 (759)
41 PF07462 MSP1_C: Merozoite sur 64.4 9.1 0.0002 43.0 4.7 21 56-76 237-259 (574)
42 PLN02983 biotin carboxyl carri 64.3 16 0.00034 37.9 6.1 9 43-51 114-122 (274)
43 PHA03211 serine/threonine kina 64.2 7.4 0.00016 43.3 4.1 8 146-153 65-72 (461)
44 PRK13732 single-stranded DNA-b 63.4 14 0.0003 36.0 5.3 43 33-76 72-117 (175)
45 KOG1546 Metacaspase involved i 63.3 10 0.00022 40.2 4.6 14 122-135 50-63 (362)
46 PRK03427 cell division protein 62.0 26 0.00056 37.5 7.4 19 37-55 61-79 (333)
47 KOG0917 Uncharacterized conser 62.0 30 0.00064 35.9 7.4 11 187-197 322-332 (338)
48 KOG4590 Signal transduction pr 61.8 14 0.0003 40.6 5.5 6 73-78 140-145 (409)
49 PHA03378 EBNA-3B; Provisional 60.3 17 0.00036 42.0 5.8 11 53-63 669-679 (991)
50 KOG4307 RNA binding protein RB 59.3 27 0.0006 40.5 7.3 23 40-62 137-159 (944)
51 COG5373 Predicted membrane pro 58.3 20 0.00044 42.3 6.2 8 136-143 113-120 (931)
52 KOG3397 Acetyltransferases [Ge 55.8 14 0.00031 35.9 3.8 8 39-46 85-92 (225)
53 PF15387 DUF4611: Domain of un 55.8 6.6 0.00014 34.1 1.4 27 6-32 48-76 (96)
54 COG3115 ZipA Cell division pro 54.4 35 0.00076 35.9 6.6 18 56-73 75-92 (324)
55 KOG3130 Uncharacterized conser 54.2 7.7 0.00017 42.0 1.9 30 25-54 282-311 (514)
56 PF00558 Vpu: Vpu protein; In 54.0 5.2 0.00011 34.0 0.5 27 6-32 41-67 (81)
57 PF06570 DUF1129: Protein of u 53.8 1.8E+02 0.004 28.6 11.6 22 255-276 181-202 (206)
58 KOG2546 Abl interactor ABI-1, 53.2 16 0.00035 40.0 4.2 23 66-90 318-340 (483)
59 TIGR00927 2A1904 K+-dependent 53.2 1.1E+02 0.0025 37.2 11.3 13 43-55 287-299 (1096)
60 KOG1955 Ral-GTPase effector RA 52.3 24 0.00051 39.5 5.3 11 93-103 491-501 (737)
61 KOG3832 Predicted amino acid t 52.1 9.1 0.0002 38.3 1.9 21 60-80 107-127 (319)
62 PF02993 MCPVI: Minor capsid p 51.8 4.8 0.00011 40.8 0.0 10 8-17 98-107 (238)
63 PLN00034 mitogen-activated pro 51.0 39 0.00083 35.4 6.7 17 526-542 303-319 (353)
64 KOG3895 Synaptic vesicle prote 50.1 33 0.00072 36.9 5.8 10 89-98 400-409 (488)
65 PF15451 DUF4632: Domain of un 49.5 6.5 0.00014 31.5 0.4 20 15-37 6-25 (71)
66 PTZ00415 transmission-blocking 48.8 11 0.00023 47.7 2.2 16 431-446 636-651 (2849)
67 KOG2140 Uncharacterized conser 48.5 6.9 0.00015 43.9 0.5 27 11-37 412-438 (739)
68 PF05297 Herpes_LMP1: Herpesvi 47.9 6.1 0.00013 41.1 0.0 29 189-217 45-73 (381)
69 TIGR00927 2A1904 K+-dependent 47.3 8.1 0.00018 46.4 0.9 12 206-217 938-949 (1096)
70 PRK12270 kgd alpha-ketoglutara 47.2 41 0.00089 41.0 6.5 7 2-8 5-11 (1228)
71 PLN03132 NADH dehydrogenase (u 47.2 14 0.0003 41.3 2.6 15 442-456 375-389 (461)
72 PTZ00415 transmission-blocking 46.5 9.2 0.0002 48.2 1.2 8 445-452 697-704 (2849)
73 PRK08763 single-stranded DNA-b 46.1 37 0.0008 32.7 5.0 42 33-74 70-111 (164)
74 KOG3837 Uncharacterized conser 45.8 26 0.00056 38.4 4.3 17 111-127 177-193 (523)
75 TIGR00859 ENaC sodium channel 45.4 27 0.00059 40.3 4.8 6 95-100 555-560 (595)
76 PF10446 DUF2457: Protein of u 45.3 43 0.00094 37.0 5.9 8 84-91 282-289 (458)
77 PRK14971 DNA polymerase III su 45.1 48 0.001 38.5 6.7 8 189-196 500-507 (614)
78 KOG2677 Stoned B synaptic vesi 43.7 63 0.0014 37.4 7.0 21 56-76 52-72 (922)
79 KOG2199 Signal transducing ada 43.0 51 0.0011 36.0 5.9 13 98-110 413-425 (462)
80 PF09849 DUF2076: Uncharacteri 42.9 33 0.00072 35.2 4.4 18 162-179 147-164 (247)
81 KOG4090 Uncharacterized conser 42.9 51 0.0011 31.3 5.2 9 102-110 20-28 (157)
82 PF10110 GPDPase_memb: Membran 42.1 73 0.0016 29.7 6.3 32 433-464 104-135 (149)
83 COG3147 DedD Uncharacterized p 41.7 1.2E+02 0.0026 30.6 7.8 7 28-34 39-45 (226)
84 TIGR01628 PABP-1234 polyadenyl 41.3 36 0.00078 38.6 4.9 7 26-32 298-304 (562)
85 KOG1985 Vesicle coat complex C 40.5 72 0.0016 37.9 7.0 9 543-551 730-738 (887)
86 PF10873 DUF2668: Protein of u 39.8 53 0.0011 31.0 4.8 7 93-99 113-119 (155)
87 PF15471 TMEM171: Transmembran 39.7 89 0.0019 32.5 6.8 19 72-90 203-221 (319)
88 PF14017 DUF4233: Protein of u 39.4 2.8E+02 0.0062 24.8 10.2 49 221-278 55-103 (107)
89 PRK13855 type IV secretion sys 39.3 43 0.00092 36.4 4.7 15 379-393 280-294 (376)
90 PF15449 Retinal: Retinal prot 38.7 1E+02 0.0022 37.8 7.9 6 65-70 1046-1051(1287)
91 KOG1955 Ral-GTPase effector RA 38.4 46 0.00099 37.3 4.8 13 64-76 505-517 (737)
92 PF07462 MSP1_C: Merozoite sur 38.2 47 0.001 37.6 4.9 7 147-153 332-338 (574)
93 TIGR01299 synapt_SV2 synaptic 37.9 7.8E+02 0.017 29.4 20.6 19 204-222 214-232 (742)
94 COG5137 Histone chaperone invo 37.7 15 0.00033 36.7 1.0 21 17-37 183-203 (279)
95 KOG1922 Rho GTPase effector BN 37.4 95 0.0021 37.3 7.8 11 443-453 716-726 (833)
96 PF07304 SRA1: Steroid recepto 37.1 11 0.00024 35.9 0.0 6 189-194 68-73 (157)
97 KOG1546 Metacaspase involved i 36.9 45 0.00097 35.6 4.3 24 115-138 39-62 (362)
98 KOG4317 Predicted Zn-finger pr 36.8 16 0.00035 38.5 1.1 30 7-37 71-109 (383)
99 PRK14971 DNA polymerase III su 36.3 56 0.0012 38.0 5.4 6 211-216 505-510 (614)
100 TIGR01129 secD protein-export 35.7 5E+02 0.011 28.5 12.5 17 198-214 250-266 (397)
101 PF15195 TMEM210: TMEM210 fami 35.6 45 0.00097 29.3 3.4 11 62-72 81-91 (116)
102 KOG0559 Dihydrolipoamide succi 35.1 81 0.0018 34.2 5.8 13 56-68 134-146 (457)
103 KOG2322 N-methyl-D-aspartate r 35.0 5.2E+02 0.011 26.5 12.2 6 381-386 203-208 (237)
104 PF02724 CDC45: CDC45-like pro 34.5 22 0.00048 41.3 1.8 7 435-441 557-563 (622)
105 PF15470 DUF4637: Domain of un 33.3 19 0.00042 33.8 0.9 20 139-158 139-158 (173)
106 PF04625 DEC-1_N: DEC-1 protei 32.4 81 0.0018 33.5 5.3 9 369-377 334-342 (407)
107 PRK10649 hypothetical protein; 32.3 2E+02 0.0044 33.2 9.1 22 204-225 48-69 (577)
108 PRK10263 DNA translocase FtsK; 32.1 58 0.0013 40.9 4.8 10 392-401 1075-1084(1355)
109 KOG0127 Nucleolar protein fibr 31.0 26 0.00056 39.6 1.5 20 45-64 245-264 (678)
110 PTZ00249 variable surface prot 30.7 81 0.0017 35.5 5.2 45 28-79 220-266 (516)
111 KOG4454 RNA binding protein (R 30.6 44 0.00096 33.8 2.9 15 62-76 136-150 (267)
112 PRK14849 putative lipoprotein/ 30.5 30 0.00066 44.4 2.2 9 353-361 1602-1610(1806)
113 PF03153 TFIIA: Transcription 30.2 20 0.00044 38.6 0.6 18 34-51 302-319 (375)
114 KOG2153 Protein involved in th 29.6 23 0.0005 40.8 0.9 24 529-554 657-680 (704)
115 PF06409 NPIP: Nuclear pore co 29.3 29 0.00063 35.1 1.4 8 56-63 200-207 (265)
116 KOG2141 Protein involved in hi 29.3 58 0.0013 38.2 3.9 11 411-421 653-663 (822)
117 PF14816 FAM178: Family of unk 28.3 22 0.00048 38.6 0.5 23 49-71 74-96 (377)
118 PHA03160 hypothetical protein; 28.3 42 0.00091 37.5 2.5 10 10-19 327-336 (499)
119 KOG2181 LIM domain binding pro 27.7 96 0.0021 32.8 4.8 24 53-76 358-381 (415)
120 PF05053 Menin: Menin; InterP 27.4 16 0.00035 41.5 -0.8 8 138-145 559-566 (618)
121 KOG1834 Calsyntenin [Extracell 27.4 30 0.00065 39.9 1.3 6 64-69 936-941 (952)
122 PF01698 FLO_LFY: Floricaula / 27.3 21 0.00045 38.7 0.0 8 187-194 85-92 (386)
123 KOG2652 RNA polymerase II tran 27.1 34 0.00073 36.6 1.5 8 40-47 289-296 (348)
124 PHA03356 tegument protein UL11 26.7 1.3E+02 0.0028 25.8 4.5 6 77-82 52-57 (93)
125 PF05858 BIV_Env: Bovine immun 26.5 19 0.00041 39.3 -0.5 33 10-42 3-37 (548)
126 PHA03378 EBNA-3B; Provisional 26.5 2.1E+02 0.0045 33.6 7.5 10 130-139 778-787 (991)
127 PF05350 GSK-3_bind: Glycogen 26.4 22 0.00047 35.3 0.0 13 17-29 8-20 (217)
128 KOG3397 Acetyltransferases [Ge 26.2 78 0.0017 31.0 3.6 6 71-76 159-164 (225)
129 KOG1984 Vesicle coat complex C 25.8 1.1E+02 0.0025 36.6 5.5 28 430-457 608-647 (1007)
130 PF10529 Hist_rich_Ca-bd: Hist 25.8 31 0.00067 20.2 0.5 8 21-28 5-12 (15)
131 KOG4514 Uncharacterized conser 25.5 94 0.002 30.5 4.0 13 5-17 8-20 (222)
132 PRK14954 DNA polymerase III su 25.4 1.3E+02 0.0029 35.0 6.1 6 191-196 505-510 (620)
133 PF05086 Dicty_REP: Dictyostel 24.9 1.4E+02 0.003 35.5 5.9 23 278-300 424-447 (911)
134 KOG1146 Homeobox protein [Gene 24.5 1.9E+02 0.0042 36.3 7.3 14 527-540 917-930 (1406)
135 KOG0341 DEAD-box protein abstr 24.4 33 0.0007 37.6 0.8 46 427-472 437-482 (610)
136 PF12273 RCR: Chitin synthesis 23.8 67 0.0015 29.3 2.7 6 271-276 23-28 (130)
137 PF01698 FLO_LFY: Floricaula / 23.8 26 0.00057 38.0 0.0 10 416-425 305-315 (386)
138 PF05399 EVI2A: Ectropic viral 23.7 2.9E+02 0.0063 27.9 7.1 18 135-152 118-135 (227)
139 KOG4425 Uncharacterized conser 23.6 1.1E+02 0.0025 34.2 4.7 8 67-74 38-45 (900)
140 KOG3415 Putative Rab5-interact 23.6 5.7E+02 0.012 23.4 8.4 47 184-242 37-83 (129)
141 PF12868 DUF3824: Domain of un 23.6 3.7E+02 0.0081 25.2 7.6 13 10-22 29-41 (137)
142 PF15324 TALPID3: Hedgehog sig 22.6 1.6E+02 0.0034 36.2 5.9 22 33-54 874-895 (1252)
143 KOG2147 Nucleolar protein invo 22.5 54 0.0012 38.5 2.1 19 32-50 314-332 (823)
144 KOG3655 Drebrins and related a 22.5 1.5E+02 0.0034 33.1 5.5 119 2-132 238-363 (484)
145 PF05756 S-antigen: S-antigen 22.2 47 0.001 28.0 1.2 11 15-25 63-73 (94)
146 PF12526 DUF3729: Protein of u 22.0 2.1E+02 0.0045 26.0 5.3 11 121-131 88-98 (113)
147 PF15345 TMEM51: Transmembrane 21.8 1.5E+02 0.0032 30.3 4.8 13 94-106 174-186 (233)
148 PF10669 Phage_Gp23: Protein g 21.4 27 0.00058 30.7 -0.4 19 11-29 51-69 (121)
149 PHA03132 thymidine kinase; Pro 20.9 2.6E+02 0.0056 32.4 7.1 12 428-439 452-463 (580)
150 PTZ00163 hypothetical protein; 20.8 40 0.00088 32.2 0.6 13 2-15 67-79 (230)
151 KOG0577 Serine/threonine prote 20.6 2.3E+02 0.0049 33.2 6.4 12 70-81 391-402 (948)
152 KOG1174 Anaphase-promoting com 20.3 50 0.0011 36.6 1.2 34 10-43 509-542 (564)
153 KOG0943 Predicted ubiquitin-pr 20.3 85 0.0018 39.0 3.1 17 275-291 2115-2131(3015)
154 PRK06975 bifunctional uroporph 20.2 1.6E+02 0.0034 34.6 5.4 53 84-136 267-319 (656)
155 PF05086 Dicty_REP: Dictyostel 20.2 1.4E+02 0.003 35.5 4.7 6 71-76 250-255 (911)
156 PF13388 DUF4106: Protein of u 20.1 2E+02 0.0043 30.4 5.4 12 122-133 237-248 (422)
157 PHA03291 envelope glycoprotein 20.1 2.3E+02 0.005 30.7 6.0 61 73-138 196-256 (401)
No 1
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism]
Probab=100.00 E-value=7.8e-64 Score=550.32 Aligned_cols=364 Identities=23% Similarity=0.441 Sum_probs=295.9
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH--Hhhcc-------CCc------
Q 008166 186 KEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILL--ICFQK-------PAT------ 250 (575)
Q Consensus 186 ~~~~dl~~~~~~i~~~~~is~vls~iwl~llr~~~~~~i~~~vw~~iil~~~~~i~~--~~f~~-------~~~------ 250 (575)
+...|+..+|+++...+.++++++++|+.++|.+++. ++|+.+++.+...++. .|+.. +..
T Consensus 140 ~i~~~i~~sw~~i~~~~~~~l~~s~i~~~~lr~~~~~----l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~~~ 215 (577)
T KOG1362|consen 140 RIFADILRSWYTILSLLGIALVLSLIFTKLLRFLAAI----LPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFTSS 215 (577)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecchH
Confidence 3678899999999999999999999999999966654 4677666655444331 12111 100
Q ss_pred ------------hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHHHH
Q 008166 251 ------------DGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVI 318 (575)
Q Consensus 251 ------------~~~~i~~ii~ai~~~ly~~~~r~RI~~ai~iLk~As~~i~~~p~l~~~~i~~~ii~~~~~~~W~~~~i 318 (575)
+..+++..++.++.++|++++|+||+++++++|+|+|++.+.|+++++|++++++.++|+++|+.+.+
T Consensus 216 ~~~~~~~~~~~l~~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~~~ 295 (577)
T KOG1362|consen 216 LFVAVGNQLTLLDAVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTLFPPALTFFVLLLFISLWVFVAL 295 (577)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13678888888888788889999999999999999999999999999999999999999999999877
Q ss_pred hc--cc--------ccCch----HHHHHHHHH-HHHHHHHHhccccccceeeeeeeeecCCC-----chHHHHHHHHHhh
Q 008166 319 GA--LN--------FYFPP----LIIIALVLS-LAWTTEVMRNVVNLTVCRVISLYYILGMQ-----SSTQFCFQRALTQ 378 (575)
Q Consensus 319 G~--~~--------~~~~~----~~~~~~lfs-~~Wt~~vi~nv~~~tvAg~va~WYF~~~~-----~pv~~S~~ra~ty 378 (575)
+. .+ ..+++ .+++++++. ++|+++|++|++|+++||++++|||++++ .|+..|++|+++|
T Consensus 296 ~l~t~~~~~~gg~~~~~~~~~~~~~~~~~vv~~l~Wt~~fi~a~q~~vISgava~~Yf~~~~~~iP~~p~~~al~ra~~y 375 (577)
T KOG1362|consen 296 FLVTSGPNSEGGCACTYSGGSLRILFWLLVVGSLIWTSEFILALQQVVISGAVASWYFARDKQDIPSSPLFSALRRALRY 375 (577)
T ss_pred HHhhcccccCCCceeeccCCcchhHhHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeEecCCCCCCCchHHHHHHHHHHH
Confidence 22 12 22322 355666666 99999999999999999999999997442 6899999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhh-hcCCC----chhHHHHHHHHHHHHHHHHhchhhHhHHHhhcCCchhHhHHHH
Q 008166 379 NLGSACLGSLFVPTIEALRIVARGLNL-LEGED----EFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDT 453 (575)
Q Consensus 379 hfGSIcfGSLIvaiI~~lR~il~~l~~-l~~~~----~~l~~c~~C~l~~le~~l~y~N~~Ayi~iAI~G~~F~~SAk~a 453 (575)
|+||||+|||++++|+++|.++|++++ +|+.. ++++||+.||+||+|++++|+|||||+|+|||||+||+|||||
T Consensus 376 hlGSi~~GSliv~iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda 455 (577)
T KOG1362|consen 376 HLGSICFGSLLVALVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDA 455 (577)
T ss_pred hccchhhhhhHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHH
Confidence 999999999999999999999999985 55543 5999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcceehhchhHHHHHHhhHHHHHHHHHHHHHHhhccCCc--chhHHHHHHHHHH-HHHHHhhhhhHHHHHHH
Q 008166 454 WALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQP--FTATISLLTFIIG-YLMTRIAMALPQACVSC 530 (575)
Q Consensus 454 ~~L~~~n~~~alv~d~l~~~vLfLg~l~vg~i~~~~~~~~~~~~~~~--~~~~p~li~f~ig-y~I~~~f~sV~~~~VdT 530 (575)
|+|+++|..+....|.++++++|+|++. +++++.+++.|....+.. +++.+.++++++| |+|+++|++|++|+|||
T Consensus 456 ~~ll~~Nv~~vv~~d~vs~~llflgk~l-~~~~~g~~g~~~l~~~~~~l~~y~V~lla~iig~ylIa~~f~~v~~m~Vdt 534 (577)
T KOG1362|consen 456 WELLRRNVLRVVDVDLVSDFLLFLGKLL-GAIGSGVAGIWLLIGRKDVLYYYVVPLLAFIIGAYLIAHIFFSVLEMCVDT 534 (577)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhcCCCcceeEeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999444455555777777777665 455666666665554444 5666788888888 99999999999999999
Q ss_pred HHHHhcccCCCCcccccchhHHHH
Q 008166 531 YYVCYAQNPDNRLFDSTIKDRLSL 554 (575)
Q Consensus 531 ifvCfaeDpe~~~~~~~~p~~~~~ 554 (575)
+|+||+||||....+.+.|.+.++
T Consensus 535 lflCf~eD~e~n~gs~~~p~~~~~ 558 (577)
T KOG1362|consen 535 LFLCFAEDPESNDGSPEKPQFMSE 558 (577)
T ss_pred hhheeEecHhhcCCCCCcceeeeH
Confidence 999999999953444446654333
No 2
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=100.00 E-value=8.1e-59 Score=486.66 Aligned_cols=289 Identities=26% Similarity=0.501 Sum_probs=257.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHhc-----cc-----
Q 008166 253 VGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGA-----LN----- 322 (575)
Q Consensus 253 ~~i~~ii~ai~~~ly~~~~r~RI~~ai~iLk~As~~i~~~p~l~~~~i~~~ii~~~~~~~W~~~~iG~-----~~----- 322 (575)
.++++.+++++.++++++.||||++|++++|+|+++++++|+++++|+++.++.++|+++|+.+..+. ..
T Consensus 2 ~~ii~~i~~~i~~~~~~~~r~rI~~a~~vlk~A~~~l~~~p~l~~~p~~~~~~~~~~~~~w~~~~~~l~~~g~~~~~~~~ 81 (334)
T PF04515_consen 2 FAIIFLILALIIILFIIFLRKRIPFAIAVLKVASKALRSNPSLLLVPIITFIVQLVFFVLWIIVVLYLFSIGSPVINPCN 81 (334)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 34556666666667778889999999999999999999999999999999999999999999988732 10
Q ss_pred c------------c---CchHHHHHHHHHHHHHHHHHhccccccceeeeeeeeecCCC-----chHHHHHHHHHhhhhhh
Q 008166 323 F------------Y---FPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQ-----SSTQFCFQRALTQNLGS 382 (575)
Q Consensus 323 ~------------~---~~~~~~~~~lfs~~Wt~~vi~nv~~~tvAg~va~WYF~~~~-----~pv~~S~~ra~tyhfGS 382 (575)
. + ...++.+|++|+++|+++|++|++|+++||++++|||++++ .|+.+|++|+++|||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~W~~~~i~~~~~~~vag~v~~WYF~~~~~~~~~~~~~~s~~~~~~~~~GS 161 (334)
T PF04515_consen 82 LPFSSGSISCCQFVFDSWSYWLIIYHLFSFFWTSQFILNVQQFTVAGVVAQWYFSRDKPNMPKSPVLRSLKRALTYHFGS 161 (334)
T ss_pred CCcccccccceeeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCCcccccchHHHHHHHHHHHHhHHH
Confidence 0 1 12357889999999999999999999999999999997442 68999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhcCC-----CchhHHHHHHHHHHHHHHHHhchhhHhHHHhhcCCchhHhHHHHHHHH
Q 008166 383 ACLGSLFVPTIEALRIVARGLNLLEGE-----DEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALF 457 (575)
Q Consensus 383 IcfGSLIvaiI~~lR~il~~l~~l~~~-----~~~l~~c~~C~l~~le~~l~y~N~~Ayi~iAI~G~~F~~SAk~a~~L~ 457 (575)
+|+|||++++++++|.+++++++..++ .+++.||+.||++|+|+++||+|||||+|+||||++||+|||++++|+
T Consensus 162 i~~gSlivaiv~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~e~~l~~~n~~ayi~~ai~G~~F~~sak~~~~L~ 241 (334)
T PF04515_consen 162 ICFGSLIVAIVQFLRFLLRYLRRRAKKSQNKFVKFILCCLSCCLWCLEKFLEYINKYAYIYIAIYGKSFCESAKRAFELI 241 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 999999999999999999998864332 368999999999999999999999999999999999999999999999
Q ss_pred HhcCCcceehhchhHHHHHHhhHHHHHHHHHHHHHHhhc----cCCcchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 008166 458 ERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAK----VHQPFTATISLLTFIIGYLMTRIAMALPQACVSCYYV 533 (575)
Q Consensus 458 ~~n~~~alv~d~l~~~vLfLg~l~vg~i~~~~~~~~~~~----~~~~~~~~p~li~f~igy~I~~~f~sV~~~~VdTifv 533 (575)
+||+.++..+|++++.++++|+++++.+++++++.+... .+..+...|+++++++||.++++|++++++++||+|+
T Consensus 242 ~~n~~~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~f~~v~~~~vdti~v 321 (334)
T PF04515_consen 242 KRNGLRAIIVDGLGSFVLFLGKLFISLLCGLIAYLILSNSSFKNDLSYPIVPALISFFIGYFISSIFMSVYSSAVDTIFV 321 (334)
T ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888877753 3445667899999999999999999999999999999
Q ss_pred HhcccCCC
Q 008166 534 CYAQNPDN 541 (575)
Q Consensus 534 CfaeDpe~ 541 (575)
||+||||.
T Consensus 322 c~~~d~e~ 329 (334)
T PF04515_consen 322 CYAEDPEM 329 (334)
T ss_pred HHHHHhhh
Confidence 99999994
No 3
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.81 E-value=1.4e-05 Score=89.95 Aligned_cols=19 Identities=11% Similarity=0.006 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHHHhhhh
Q 008166 273 QRIGFCCKVLIISLQPVSK 291 (575)
Q Consensus 273 ~RI~~ai~iLk~As~~i~~ 291 (575)
+.|+=+|.-..+||.=+++
T Consensus 795 nniKP~i~avt~ACEE~rk 813 (1102)
T KOG1924|consen 795 NNIKPDIVAVTAACEELRK 813 (1102)
T ss_pred hhcChHHHHHHHHHHHHHh
Confidence 3444444445555555555
No 4
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.50 E-value=0.00014 Score=82.13 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=8.9
Q ss_pred HHHHHHhcCCCCCCCCCCCcC
Q 008166 551 RLSLMKAGRDVVVPTPRVPHR 571 (575)
Q Consensus 551 ~~~~l~~~~~~~~p~~~~~~~ 571 (575)
+++.|+++-....+.-|.|||
T Consensus 1046 lLeaLqsgaafr~rrk~~prq 1066 (1102)
T KOG1924|consen 1046 LLEALQSGAAFRTRRKRLPRQ 1066 (1102)
T ss_pred HHHHHHhhccccCcccccCCC
Confidence 445555543333333334443
No 5
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=95.74 E-value=0.011 Score=73.07 Aligned_cols=9 Identities=11% Similarity=0.312 Sum_probs=5.9
Q ss_pred eeeeeeeee
Q 008166 353 CRVISLYYI 361 (575)
Q Consensus 353 Ag~va~WYF 361 (575)
.|+.+.||.
T Consensus 1844 LGaYaTWy~ 1852 (2039)
T PRK15319 1844 LGVYATWFA 1852 (2039)
T ss_pred EEEEEEeec
Confidence 466667775
No 6
>PHA03247 large tegument protein UL36; Provisional
Probab=94.54 E-value=0.05 Score=69.16 Aligned_cols=18 Identities=6% Similarity=0.049 Sum_probs=11.3
Q ss_pred hhhhHHHHHHHHHHHHHh
Q 008166 271 VSQRIGFCCKVLIISLQP 288 (575)
Q Consensus 271 ~r~RI~~ai~iLk~As~~ 288 (575)
+++|++.+=..|.-.++.
T Consensus 3121 i~r~lr~TR~~L~~~~~~ 3138 (3151)
T PHA03247 3121 IRRQLRRTRHALLDRSGA 3138 (3151)
T ss_pred HHHHHHHHHHHHHhhHHH
Confidence 467777777666555543
No 7
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=93.81 E-value=0.069 Score=66.41 Aligned_cols=6 Identities=0% Similarity=-0.075 Sum_probs=2.7
Q ss_pred cccccc
Q 008166 136 SRTALN 141 (575)
Q Consensus 136 ~~~~~~ 141 (575)
+.|+|+
T Consensus 1723 ~~P~YR 1728 (2039)
T PRK15319 1723 VAPQYR 1728 (2039)
T ss_pred Cccccc
Confidence 344553
No 8
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses.
Probab=91.95 E-value=0.37 Score=47.03 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=8.5
Q ss_pred CcccccchHHHHHH
Q 008166 142 SKKYTNKISLFLFV 155 (575)
Q Consensus 142 s~~~~d~~~~~lF~ 155 (575)
.+.+.+++|..|+-
T Consensus 121 wr~lR~~I~~tLya 134 (187)
T PF11081_consen 121 WRELRNRIFPTLYA 134 (187)
T ss_pred HHHHHHHHHHHHHH
Confidence 45557777766643
No 9
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=91.76 E-value=0.29 Score=53.84 Aligned_cols=15 Identities=40% Similarity=0.640 Sum_probs=6.5
Q ss_pred CCCCCCCCCCCCCCC
Q 008166 99 QPSRQAPRIATPPPS 113 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~ 113 (575)
+|++.+++.+|||||
T Consensus 403 ~ps~~p~~PpPPPPs 417 (569)
T KOG3671|consen 403 NPSAVPVPPPPPPPS 417 (569)
T ss_pred CCCCCCCCCCCCCCc
Confidence 344444444444443
No 10
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=91.53 E-value=0.37 Score=55.20 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=12.4
Q ss_pred CCCCCCCcccccccccCCCCC
Q 008166 56 INGEQRGFNASMMQTLNPTNP 76 (575)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~p 76 (575)
+|++.+....+.+-.+.|.|+
T Consensus 963 ~~~~~paA~~~p~p~~~~~~~ 983 (1106)
T KOG0162|consen 963 QNGVSPAAKGSPLPAQKPVNT 983 (1106)
T ss_pred CCCCCccccCCCCCCCCCCCc
Confidence 455555555666666666665
No 11
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=91.43 E-value=0.33 Score=55.84 Aligned_cols=9 Identities=22% Similarity=0.648 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 008166 507 LLTFIIGYL 515 (575)
Q Consensus 507 li~f~igy~ 515 (575)
+.-|+-.|-
T Consensus 719 f~~F~~~~k 727 (830)
T KOG1923|consen 719 FVRFVRAYK 727 (830)
T ss_pred HHHHHHHHH
Confidence 333444443
No 12
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.42 E-value=0.39 Score=50.87 Aligned_cols=47 Identities=26% Similarity=0.396 Sum_probs=24.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 008166 90 PRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQQASRT 138 (575)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (575)
|+++-|.+.+|.|.||++.|||+++-++|+ ..|+-.+++|||+|+.+
T Consensus 420 ~a~~~pt~~~PprPppqggppP~g~~~~p~--~~~hl~~~gppq~prt~ 466 (488)
T KOG3895|consen 420 PAQASPTRRLPPRPPPQGGPPPRGHMSDPV--GSRHLDHDGPPQIPRTG 466 (488)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCccccCCcc--ccccCCCCCCCCCCCCC
Confidence 444456666667777777777655433333 33444434445544443
No 13
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=90.64 E-value=0.18 Score=59.97 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=7.1
Q ss_pred CCCCCCCCCCccccc
Q 008166 123 TSPPAPTPTPQQASR 137 (575)
Q Consensus 123 ~~~~~~~~~~~~~~~ 137 (575)
+.||++|||||+|.+
T Consensus 18 ~epps~pppPppPg~ 32 (2365)
T COG5178 18 FEPPSQPPPPPPPGV 32 (2365)
T ss_pred CCCCCCCCCccCCCc
Confidence 334444445555444
No 14
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=89.55 E-value=0.5 Score=56.89 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 008166 98 SQPSRQAPRIATPPPSQPSRP 118 (575)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~ 118 (575)
.|+-.+|-++.|+||+||.|+
T Consensus 1895 pq~~~~pqp~gpqPp~~p~p~ 1915 (1958)
T KOG0391|consen 1895 PQPAAQPQPQGPQPPQQPSPQ 1915 (1958)
T ss_pred CccCCCCCCCCCCCCCCCCCC
Confidence 333344445555555555553
No 15
>PRK09752 adhesin; Provisional
Probab=89.50 E-value=0.33 Score=58.56 Aligned_cols=11 Identities=9% Similarity=0.178 Sum_probs=5.8
Q ss_pred ceeeeeeeeec
Q 008166 352 VCRVISLYYIL 362 (575)
Q Consensus 352 vAg~va~WYF~ 362 (575)
-.|+.++||-+
T Consensus 1062 SvGlYaTWy~n 1072 (1250)
T PRK09752 1062 AVGLTSSWFQH 1072 (1250)
T ss_pred eeeeEEEEEec
Confidence 34555566653
No 16
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=87.52 E-value=2.4 Score=45.29 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=11.7
Q ss_pred cceeeeeeecCCCccccC
Q 008166 37 EVVVEEKVVDSNSNVNIN 54 (575)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~ 54 (575)
.|+++|-.|.....|..+
T Consensus 123 sGvi~e~lvk~gdtV~~g 140 (457)
T KOG0559|consen 123 SGVITELLVKDGDTVTPG 140 (457)
T ss_pred cceeeEEecCCCCcccCC
Confidence 477888777666555544
No 17
>PRK15313 autotransport protein MisL; Provisional
Probab=87.41 E-value=0.81 Score=54.27 Aligned_cols=10 Identities=10% Similarity=0.311 Sum_probs=5.6
Q ss_pred ceeeeeeeee
Q 008166 352 VCRVISLYYI 361 (575)
Q Consensus 352 vAg~va~WYF 361 (575)
-.|+.++||-
T Consensus 755 SlG~YaTWy~ 764 (955)
T PRK15313 755 SVGLYGTWYA 764 (955)
T ss_pred eeEeEEEEec
Confidence 3455566664
No 18
>PRK15313 autotransport protein MisL; Provisional
Probab=85.86 E-value=1 Score=53.54 Aligned_cols=7 Identities=0% Similarity=-0.121 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 008166 152 FLFVLHM 158 (575)
Q Consensus 152 ~lF~~~l 158 (575)
..+..++
T Consensus 640 gsY~ANl 646 (955)
T PRK15313 640 GSYLANN 646 (955)
T ss_pred HHHHHHH
Confidence 3434433
No 19
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=85.35 E-value=0.62 Score=55.67 Aligned_cols=9 Identities=11% Similarity=0.305 Sum_probs=3.6
Q ss_pred hhhhcCcch
Q 008166 288 PVSKFSDLN 296 (575)
Q Consensus 288 ~i~~~p~l~ 296 (575)
.+.++|++.
T Consensus 235 ~led~p~vn 243 (2365)
T COG5178 235 DLEDHPSVN 243 (2365)
T ss_pred ccccCCccc
Confidence 333344443
No 20
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=82.51 E-value=4.5 Score=44.02 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=5.8
Q ss_pred cCCCCCCCCCCCCC
Q 008166 88 TAPRIATPPPSQPS 101 (575)
Q Consensus 88 ~~~~~~~~~~~~~~ 101 (575)
+.|||+||..+.+.
T Consensus 303 t~pPP~ppl~~~~g 316 (518)
T KOG1830|consen 303 TQPPPPPPLDSPPG 316 (518)
T ss_pred CCCCCCCCCCCCCC
Confidence 34444444444443
No 21
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.27 E-value=2.3 Score=45.04 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=14.1
Q ss_pred CCCCCCCcccc-----cccccCCCCCc
Q 008166 56 INGEQRGFNAS-----MMQTLNPTNPL 77 (575)
Q Consensus 56 ~~~~~~~~~~~-----~~~~~~~~~p~ 77 (575)
+|=.++..+.. |+-+++..+|+
T Consensus 115 h~W~~pssdLv~Liq~l~a~f~~~pP~ 141 (365)
T KOG2391|consen 115 HNWDPPSSDLVGLIQELIAAFSEDPPV 141 (365)
T ss_pred ccCCCccchHHHHHHHHHHHhcCCCcc
Confidence 56666666654 34567888883
No 22
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=79.96 E-value=2.7 Score=45.31 Aligned_cols=9 Identities=33% Similarity=0.678 Sum_probs=3.4
Q ss_pred CCCCCCCCC
Q 008166 111 PPSQPSRPR 119 (575)
Q Consensus 111 ~~~~~~~~~ 119 (575)
+|.+|.|++
T Consensus 523 lp~~~~~qr 531 (563)
T KOG1785|consen 523 LPAPPNPQR 531 (563)
T ss_pred CCCCCCccc
Confidence 333333333
No 23
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.23 E-value=4.3 Score=48.25 Aligned_cols=6 Identities=17% Similarity=0.451 Sum_probs=2.7
Q ss_pred cCCCCC
Q 008166 71 LNPTNP 76 (575)
Q Consensus 71 ~~~~~p 76 (575)
+++.+|
T Consensus 992 ~r~~~~ 997 (1080)
T KOG0566|consen 992 ARSPSP 997 (1080)
T ss_pred cCCCCC
Confidence 444444
No 24
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=77.83 E-value=5.2 Score=42.51 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=11.4
Q ss_pred CCcccccccccCCCCCc
Q 008166 61 RGFNASMMQTLNPTNPL 77 (575)
Q Consensus 61 ~~~~~~~~~~~~~~~p~ 77 (575)
.|-.-.|+|+-+|+-|+
T Consensus 214 ~GPPP~~~~Q~~P~P~m 230 (498)
T KOG4849|consen 214 SGPPPLMMQQVRPTPLM 230 (498)
T ss_pred CCCCCcccccCCCCCCC
Confidence 33466788888776554
No 25
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=77.53 E-value=6.7 Score=46.89 Aligned_cols=18 Identities=17% Similarity=0.015 Sum_probs=9.4
Q ss_pred eEEEeCcccccCCCCCCC
Q 008166 78 RIVINGGRRVTAPRIATP 95 (575)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~ 95 (575)
.--.+.+.+...|+++++
T Consensus 305 ~~~~~~~~~~~~~~p~~~ 322 (833)
T KOG1922|consen 305 TFDFNFLQRESPPPPPIL 322 (833)
T ss_pred ccccccCccccCCCCCCC
Confidence 334455666666654433
No 26
>PTZ00438 gamete antigen 27/25-like protein; Provisional
Probab=77.04 E-value=1.1 Score=45.73 Aligned_cols=30 Identities=53% Similarity=0.633 Sum_probs=15.5
Q ss_pred hhhhhhhhhhcCCCCCCCchhhhhhhcccceeeee
Q 008166 9 ERETQNKEEEEGGGEGGGEEEVKDVEKGEVVVEEK 43 (575)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (575)
||-||++|+|+.++ ||.++||..|+|-||-
T Consensus 102 ergtq~~e~e~~~v-----e~i~eveevevveeey 131 (374)
T PTZ00438 102 ERGTQKEEEEDEDV-----EEIEEVEEVEVVEEEY 131 (374)
T ss_pred hcCccchhhhhhhh-----hhhhhhhhhhhhhhhc
Confidence 45555555544443 4555566666544443
No 27
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.91 E-value=4.7 Score=46.34 Aligned_cols=9 Identities=11% Similarity=0.253 Sum_probs=3.7
Q ss_pred ccccccCCC
Q 008166 66 SMMQTLNPT 74 (575)
Q Consensus 66 ~~~~~~~~~ 74 (575)
.-+++..+.
T Consensus 354 ~l~~~~~~~ 362 (585)
T PRK14950 354 AVIEALLVP 362 (585)
T ss_pred HHHHHhcCC
Confidence 344444443
No 28
>PF05750 Rubella_Capsid: Rubella capsid protein; InterPro: IPR008819 Rubella virus is an enveloped positive-strand RNA virus of the family Togaviridae. Virions are composed of three structural proteins: a capsid and two membrane-spanning glycoproteins, E2 and E1. During virus assembly, the capsid interacts with genomic RNA to form nucleocapsids. It has been discovered that capsid phosphorylation serves to negatively regulate binding of viral genomic RNA. This may delay the initiation of nucleocapsid assembly until sufficient amounts of virus glycoproteins accumulate at the budding site and/or prevent non-specific binding to cellular RNA when levels of genomic RNA are low. It follows that at a late stage in replication, the capsid may undergo dephosphorylation before nucleocapsid assembly occurs []. This family is found together with IPR008820 from INTERPRO and IPR008821 from INTERPRO.; GO: 0016021 integral to membrane, 0019013 viral nucleocapsid
Probab=72.84 E-value=3.4 Score=40.17 Aligned_cols=9 Identities=67% Similarity=1.379 Sum_probs=3.9
Q ss_pred CCCCCCCCC
Q 008166 111 PPSQPSRPR 119 (575)
Q Consensus 111 ~~~~~~~~~ 119 (575)
|||||+||+
T Consensus 100 ppqqpqppr 108 (300)
T PF05750_consen 100 PPQQPQPPR 108 (300)
T ss_pred CcCCCCCcc
Confidence 344444443
No 29
>PRK05733 single-stranded DNA-binding protein; Provisional
Probab=72.27 E-value=7.3 Score=37.82 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=19.5
Q ss_pred hhcccceeeeeeecCCCccccCCCCCCCCCcccc---ccccc
Q 008166 33 VEKGEVVVEEKVVDSNSNVNINNINGEQRGFNAS---MMQTL 71 (575)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 71 (575)
+.||..|.-|--+..++-. .+|.+...-+..++ .++-|
T Consensus 71 l~KGs~V~VeGrLr~~~y~-kdG~~r~~~eVvvd~~g~v~~L 111 (172)
T PRK05733 71 LRKGSQVYIEGKLQTREWE-KDGIKRYTTEIVVDMQGTMQLL 111 (172)
T ss_pred hCCCCEEEEEEEEEeCcEe-cCCEEEEEEEEEEeecCeEEEC
Confidence 4588655544444444433 44544445555555 45544
No 30
>PF11179 DUF2967: Protein of unknown function (DUF2967); InterPro: IPR021349 This family of proteins with unknown function appears to be restricted to Drosophila.
Probab=71.61 E-value=3.5 Score=40.24 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=6.5
Q ss_pred CCccccCCCCCCC
Q 008166 48 NSNVNINNINGEQ 60 (575)
Q Consensus 48 ~~~~~~~~~~~~~ 60 (575)
|.|.|.|+|++.-
T Consensus 89 nan~n~~gg~~s~ 101 (258)
T PF11179_consen 89 NANANANGGSNSS 101 (258)
T ss_pred ccccccccCCccc
Confidence 4455555555443
No 31
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=71.19 E-value=8.4 Score=42.87 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=17.4
Q ss_pred CCcchhhhhhhhhhhcCCCCCCCchhhhhhhccc
Q 008166 4 SDPVVERETQNKEEEEGGGEGGGEEEVKDVEKGE 37 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (575)
+|-.-|||.-+..=+|++.|-| -|.++..|+||
T Consensus 148 ~~~s~~~~~~k~~F~~~~~~AE-~~~~~A~~~~~ 180 (817)
T KOG1925|consen 148 ADTSSERSIYKARFLENVAAAE-TEKQVALAQGR 180 (817)
T ss_pred cchhhhhhhHHhHHHhhhHHHH-HHHHHHHHhcc
Confidence 3444456665555555544433 24455666665
No 32
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=70.62 E-value=14 Score=44.38 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=8.1
Q ss_pred hHHHHHHhcCCCCCC
Q 008166 550 DRLSLMKAGRDVVVP 564 (575)
Q Consensus 550 ~~~~~l~~~~~~~~p 564 (575)
|+-|+||..-+++-|
T Consensus 737 eLrdRlK~gfe~kp~ 751 (982)
T PF03154_consen 737 ELRDRLKPGFEVKPP 751 (982)
T ss_pred HHHHhhccccccCCC
Confidence 455666666555443
No 33
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=70.04 E-value=16 Score=40.95 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=13.3
Q ss_pred CCCCcccccccccCCCCCceEEE
Q 008166 59 EQRGFNASMMQTLNPTNPLRIVI 81 (575)
Q Consensus 59 ~~~~~~~~~~~~~~~~~p~~~~~ 81 (575)
+....+...+|...+..|--+..
T Consensus 243 ~~g~d~~~~~~~~~~~sp~s~as 265 (705)
T KOG0639|consen 243 ENGVDNGRSLNKDARDSPASVAS 265 (705)
T ss_pred ccccccchhhhcccccCcchhhh
Confidence 33335556667777777755443
No 34
>PRK13335 superantigen-like protein; Reviewed
Probab=69.36 E-value=6.8 Score=41.49 Aligned_cols=6 Identities=50% Similarity=0.429 Sum_probs=2.4
Q ss_pred eeeecC
Q 008166 42 EKVVDS 47 (575)
Q Consensus 42 ~~~~~~ 47 (575)
||+-.|
T Consensus 85 E~~s~S 90 (356)
T PRK13335 85 EKTSAS 90 (356)
T ss_pred hccccC
Confidence 444333
No 35
>PHA03211 serine/threonine kinase US3; Provisional
Probab=69.11 E-value=5.5 Score=44.30 Aligned_cols=13 Identities=0% Similarity=-0.256 Sum_probs=6.2
Q ss_pred HHHHHHHhcccCC
Q 008166 528 VSCYYVCYAQNPD 540 (575)
Q Consensus 528 VdTifvCfaeDpe 540 (575)
-|-|--|+..||+
T Consensus 432 ~dli~~mL~~DP~ 444 (461)
T PHA03211 432 EYLVCRALTFDGA 444 (461)
T ss_pred HHHHHHHcccChh
Confidence 3444445555555
No 36
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=68.75 E-value=6.5 Score=41.81 Aligned_cols=9 Identities=33% Similarity=0.427 Sum_probs=4.3
Q ss_pred CCCCCceEE
Q 008166 72 NPTNPLRIV 80 (575)
Q Consensus 72 ~~~~p~~~~ 80 (575)
.|.=|+|+-
T Consensus 243 ~P~~~~Q~~ 251 (498)
T KOG4849|consen 243 APQMRLQIN 251 (498)
T ss_pred CcccCcCcC
Confidence 344455554
No 37
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=68.32 E-value=5.8 Score=44.09 Aligned_cols=14 Identities=36% Similarity=0.717 Sum_probs=7.3
Q ss_pred CCCCCCCCCCCCCC
Q 008166 89 APRIATPPPSQPSR 102 (575)
Q Consensus 89 ~~~~~~~~~~~~~~ 102 (575)
-|+|||||..-|.|
T Consensus 229 ~P~~P~~P~~~P~~ 242 (817)
T KOG1925|consen 229 EPLIPASPKELPTR 242 (817)
T ss_pred CCCCCCChhccCCc
Confidence 45555555555533
No 38
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=67.89 E-value=15 Score=39.75 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=9.6
Q ss_pred hhcccceeeeeeecCCCcccc
Q 008166 33 VEKGEVVVEEKVVDSNSNVNI 53 (575)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~ 53 (575)
+++..-.|.++-.|+++...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~ 32 (376)
T PRK13855 12 VDASGSLVSDTHRRRLSGSQK 32 (376)
T ss_pred CCCCcccccCcccccCccchh
Confidence 333333444555555555443
No 39
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=65.01 E-value=10 Score=36.60 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=30.7
Q ss_pred hhhcccceeeeeeecCCCccccCCCCCCCCCcccccccccCCCC
Q 008166 32 DVEKGEVVVEEKVVDSNSNVNINNINGEQRGFNASMMQTLNPTN 75 (575)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (575)
-+.||.-|.-|.-+.+++-.+.+|.....-...+..++-|...+
T Consensus 69 ~LkKGs~V~VeGrL~~r~w~DkdG~~r~~~eI~a~~i~~L~~r~ 112 (168)
T PRK06863 69 YLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLGGRN 112 (168)
T ss_pred HCCCCCEEEEEEEEEeCCccCCCCCEEEEEEEEEeEEEECCCCC
Confidence 45688766666666677666666666666777788888776654
No 40
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=64.45 E-value=23 Score=41.52 Aligned_cols=11 Identities=27% Similarity=0.296 Sum_probs=4.6
Q ss_pred CCCCCceEEEe
Q 008166 72 NPTNPLRIVIN 82 (575)
Q Consensus 72 ~~~~p~~~~~~ 82 (575)
-+-.|++.+.+
T Consensus 680 ~rg~P~~~~~~ 690 (759)
T PF05518_consen 680 ARGAPLRPTPH 690 (759)
T ss_pred ccCCCCCcccc
Confidence 34444444433
No 41
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=64.40 E-value=9.1 Score=43.05 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=11.7
Q ss_pred CCCCCCCc--ccccccccCCCCC
Q 008166 56 INGEQRGF--NASMMQTLNPTNP 76 (575)
Q Consensus 56 ~~~~~~~~--~~~~~~~~~~~~p 76 (575)
|++|+... -.--||.-+-+=|
T Consensus 237 G~~~~~n~~~Vk~ALq~YqELLP 259 (574)
T PF07462_consen 237 GNDHAKNIAEVKEALQAYQELLP 259 (574)
T ss_pred CCChhhhHHHHHHHHHHHHHhCC
Confidence 67776665 2234555555555
No 42
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=64.32 E-value=16 Score=37.86 Aligned_cols=9 Identities=56% Similarity=0.619 Sum_probs=5.1
Q ss_pred eeecCCCcc
Q 008166 43 KVVDSNSNV 51 (575)
Q Consensus 43 ~~~~~~~~~ 51 (575)
|+|||..-|
T Consensus 114 ~lv~~~di~ 122 (274)
T PLN02983 114 KLVDSRDIV 122 (274)
T ss_pred hhhccccce
Confidence 566665544
No 43
>PHA03211 serine/threonine kinase US3; Provisional
Probab=64.21 E-value=7.4 Score=43.30 Aligned_cols=8 Identities=0% Similarity=0.156 Sum_probs=3.9
Q ss_pred ccchHHHH
Q 008166 146 TNKISLFL 153 (575)
Q Consensus 146 ~d~~~~~l 153 (575)
-.++|...
T Consensus 65 ~~~~~~~~ 72 (461)
T PHA03211 65 AARLCQIQ 72 (461)
T ss_pred HHHHHHHH
Confidence 34556544
No 44
>PRK13732 single-stranded DNA-binding protein; Provisional
Probab=63.42 E-value=14 Score=35.98 Aligned_cols=43 Identities=23% Similarity=0.179 Sum_probs=19.3
Q ss_pred hhcccceeeeeeecCCCccccCCCCCCCCCcccc---cccccCCCCC
Q 008166 33 VEKGEVVVEEKVVDSNSNVNINNINGEQRGFNAS---MMQTLNPTNP 76 (575)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p 76 (575)
+.||..|.-|--+..++-.+ +|.....-+..+. .+|-|.+-..
T Consensus 72 L~KG~~V~VeGrL~~r~ye~-dG~kr~~~eIiv~~~g~~~fL~~~~~ 117 (175)
T PRK13732 72 LRKGAQVYIEGQLRTRSWED-NGITRYVTEILVKTTGTMQMLGRAPQ 117 (175)
T ss_pred cCCCCEEEEEEEEEeeeEcc-CCeEEEEEEEEEeecCeEEEecCCCC
Confidence 45886554444444433322 3333333334444 5555554443
No 45
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=63.32 E-value=10 Score=40.21 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=6.3
Q ss_pred CCCCCCCCCCCccc
Q 008166 122 STSPPAPTPTPQQA 135 (575)
Q Consensus 122 ~~~~~~~~~~~~~~ 135 (575)
+||||.|.|+....
T Consensus 50 pPq~~~~~~~~~gk 63 (362)
T KOG1546|consen 50 PPQPPYQYPQMAGK 63 (362)
T ss_pred CCCCCCCCcccccc
Confidence 44455554444433
No 46
>PRK03427 cell division protein ZipA; Provisional
Probab=62.03 E-value=26 Score=37.49 Aligned_cols=19 Identities=26% Similarity=0.067 Sum_probs=9.3
Q ss_pred cceeeeeeecCCCccccCC
Q 008166 37 EVVVEEKVVDSNSNVNINN 55 (575)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~ 55 (575)
|||-|.+|..++.+-..++
T Consensus 61 dGvGevrv~~~~~~~~~~~ 79 (333)
T PRK03427 61 EGVGEVRVHRVNHAPANAQ 79 (333)
T ss_pred cCccceeccCCCCCCCccc
Confidence 4445556665554443333
No 47
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.97 E-value=30 Score=35.94 Aligned_cols=11 Identities=18% Similarity=0.018 Sum_probs=5.7
Q ss_pred hhhhHHhhHHH
Q 008166 187 EKRVLKYLLPQ 197 (575)
Q Consensus 187 ~~~dl~~~~~~ 197 (575)
.+.+|++.+.+
T Consensus 322 avenL~KaL~l 332 (338)
T KOG0917|consen 322 AVENLQKALKL 332 (338)
T ss_pred HHHHHHHHHHH
Confidence 34556665543
No 48
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=61.83 E-value=14 Score=40.57 Aligned_cols=6 Identities=33% Similarity=0.994 Sum_probs=2.4
Q ss_pred CCCCce
Q 008166 73 PTNPLR 78 (575)
Q Consensus 73 ~~~p~~ 78 (575)
|..++|
T Consensus 140 ~se~~~ 145 (409)
T KOG4590|consen 140 PSESIR 145 (409)
T ss_pred cccccc
Confidence 444433
No 49
>PHA03378 EBNA-3B; Provisional
Probab=60.32 E-value=17 Score=42.05 Aligned_cols=11 Identities=18% Similarity=0.069 Sum_probs=5.4
Q ss_pred cCCCCCCCCCc
Q 008166 53 INNINGEQRGF 63 (575)
Q Consensus 53 ~~~~~~~~~~~ 63 (575)
++|++-++...
T Consensus 669 ~~hi~~~p~~~ 679 (991)
T PHA03378 669 IGHIPYQPSPT 679 (991)
T ss_pred cCCcCCCCCCC
Confidence 44555554443
No 50
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=59.27 E-value=27 Score=40.48 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=10.2
Q ss_pred eeeeeecCCCccccCCCCCCCCC
Q 008166 40 VEEKVVDSNSNVNINNINGEQRG 62 (575)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~ 62 (575)
+|...--.|||+++-.-+.+...
T Consensus 137 y~a~~~~~~Sn~t~~~f~~~ss~ 159 (944)
T KOG4307|consen 137 YEASYPPQNSNATRTSFNNQSSY 159 (944)
T ss_pred eeeccCccccccccceecccccc
Confidence 33333334566655543333333
No 51
>COG5373 Predicted membrane protein [Function unknown]
Probab=58.29 E-value=20 Score=42.29 Aligned_cols=8 Identities=13% Similarity=0.260 Sum_probs=2.9
Q ss_pred ccccccCc
Q 008166 136 SRTALNSK 143 (575)
Q Consensus 136 ~~~~~~s~ 143 (575)
..+...++
T Consensus 113 ~~ps~aa~ 120 (931)
T COG5373 113 VEPSLAAN 120 (931)
T ss_pred cccccccC
Confidence 33333333
No 52
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=55.84 E-value=14 Score=35.93 Aligned_cols=8 Identities=50% Similarity=0.426 Sum_probs=3.5
Q ss_pred eeeeeeec
Q 008166 39 VVEEKVVD 46 (575)
Q Consensus 39 ~~~~~~~~ 46 (575)
.||.-|||
T Consensus 85 ~VEsVVV~ 92 (225)
T KOG3397|consen 85 WVESVVVK 92 (225)
T ss_pred EEEEEEEe
Confidence 34444444
No 53
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=55.82 E-value=6.6 Score=34.12 Aligned_cols=27 Identities=26% Similarity=0.592 Sum_probs=12.8
Q ss_pred cchhhhhhhhhh--hcCCCCCCCchhhhh
Q 008166 6 PVVERETQNKEE--EEGGGEGGGEEEVKD 32 (575)
Q Consensus 6 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 32 (575)
|.||+|.+.+.- .+...+|+||||.||
T Consensus 48 ~lVqqe~~~r~aa~p~E~ldg~deddaed 76 (96)
T PF15387_consen 48 PLVQQEAQDRVAAAPDEALDGDDEDDAED 76 (96)
T ss_pred HHHHHhhccccccCchhhccCcccccccc
Confidence 556777666432 223334444444444
No 54
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=54.43 E-value=35 Score=35.85 Aligned_cols=18 Identities=17% Similarity=0.229 Sum_probs=8.5
Q ss_pred CCCCCCCcccccccccCC
Q 008166 56 INGEQRGFNASMMQTLNP 73 (575)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~ 73 (575)
-+.+|+....+..++.+|
T Consensus 75 ~~~~~~~~~~~p~~q~q~ 92 (324)
T COG3115 75 FTQEHEAARQSPQHQYQP 92 (324)
T ss_pred ccccccccccchhhhhcc
Confidence 344444444455555553
No 55
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.23 E-value=7.7 Score=42.01 Aligned_cols=30 Identities=30% Similarity=0.221 Sum_probs=14.1
Q ss_pred CCchhhhhhhcccceeeeeeecCCCccccC
Q 008166 25 GGEEEVKDVEKGEVVVEEKVVDSNSNVNIN 54 (575)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (575)
|||||..|-..|+---|+-+|+.|+--.++
T Consensus 282 dDdeeN~ddd~~d~d~e~~~v~dN~~p~i~ 311 (514)
T KOG3130|consen 282 DDDEENIDDDDGDNDHEALGVGDNSIPTIY 311 (514)
T ss_pred cchhhcccccccccchhhhccCCCcCcccc
Confidence 333333333334433455566666655444
No 56
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=53.99 E-value=5.2 Score=34.05 Aligned_cols=27 Identities=26% Similarity=0.467 Sum_probs=18.7
Q ss_pred cchhhhhhhhhhhcCCCCCCCchhhhh
Q 008166 6 PVVERETQNKEEEEGGGEGGGEEEVKD 32 (575)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (575)
--++|=.|+.|...+|.|||+|||..+
T Consensus 41 ~li~RIreraEDSGnES~Gd~EeeL~~ 67 (81)
T PF00558_consen 41 RLIERIRERAEDSGNESDGDEEEELSA 67 (81)
T ss_dssp HHHHHHHCTTTCCHCTTTTCCHH-CHC
T ss_pred HHHHHHHcccccCCCCCCCcHHHHHHH
Confidence 345777888888778777777775554
No 57
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=53.81 E-value=1.8e+02 Score=28.60 Aligned_cols=22 Identities=5% Similarity=0.117 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHH
Q 008166 255 VCFIAFAIGNGLYACWVSQRIG 276 (575)
Q Consensus 255 i~~ii~ai~~~ly~~~~r~RI~ 276 (575)
++.++++++.+....|++||.+
T Consensus 181 ~~~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 181 WVYIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3334455444333345567654
No 58
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=53.18 E-value=16 Score=39.97 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=11.6
Q ss_pred ccccccCCCCCceEEEeCcccccCC
Q 008166 66 SMMQTLNPTNPLRIVINGGRRVTAP 90 (575)
Q Consensus 66 ~~~~~~~~~~p~~~~~~~~~~~~~~ 90 (575)
.++|-++|.-|. .+|+-..+++|
T Consensus 318 ~p~q~~~~~~P~--~~n~~vs~aP~ 340 (483)
T KOG2546|consen 318 IPLQPKHPIPPN--SVNKRVSFAPP 340 (483)
T ss_pred cccccCCCCCCc--cccCccccCCC
Confidence 356666665553 34444444444
No 59
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=53.16 E-value=1.1e+02 Score=37.19 Aligned_cols=13 Identities=38% Similarity=0.368 Sum_probs=9.8
Q ss_pred eeecCCCccccCC
Q 008166 43 KVVDSNSNVNINN 55 (575)
Q Consensus 43 ~~~~~~~~~~~~~ 55 (575)
+-+|+||.-||-+
T Consensus 287 ~~~~~~~~~~~~~ 299 (1096)
T TIGR00927 287 RRVESNSSTNHWG 299 (1096)
T ss_pred cccccCCCcCccc
Confidence 4578888887765
No 60
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.35 E-value=24 Score=39.47 Aligned_cols=11 Identities=36% Similarity=0.634 Sum_probs=7.2
Q ss_pred CCCCCCCCCCC
Q 008166 93 ATPPPSQPSRQ 103 (575)
Q Consensus 93 ~~~~~~~~~~~ 103 (575)
+|||..|++|.
T Consensus 491 ~ppPrpq~sHs 501 (737)
T KOG1955|consen 491 EPPPRPQSSHS 501 (737)
T ss_pred CCCCCCccccc
Confidence 36677777764
No 61
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=52.15 E-value=9.1 Score=38.31 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=15.6
Q ss_pred CCCcccccccccCCCCCceEE
Q 008166 60 QRGFNASMMQTLNPTNPLRIV 80 (575)
Q Consensus 60 ~~~~~~~~~~~~~~~~p~~~~ 80 (575)
.+.+.-..+||---+||..|.
T Consensus 107 aekrpilsvqrrgspnpfeis 127 (319)
T KOG3832|consen 107 AEKRPILSVQRRGSPNPFEIS 127 (319)
T ss_pred cccCCcceecccCCCCcceee
Confidence 334556678998999998886
No 62
>PF02993 MCPVI: Minor capsid protein VI; InterPro: IPR004243 This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. Residues at the C-terminal end of the protein may act as a protease cofactor leading to activation of the adenovirus proteinase [].; GO: 0019028 viral capsid; PDB: 1AVP_B.
Probab=51.76 E-value=4.8 Score=40.82 Aligned_cols=10 Identities=20% Similarity=0.508 Sum_probs=0.0
Q ss_pred hhhhhhhhhh
Q 008166 8 VERETQNKEE 17 (575)
Q Consensus 8 ~~~~~~~~~~ 17 (575)
||||.|++-|
T Consensus 98 vq~~lekrle 107 (238)
T PF02993_consen 98 VQKDLEKRLE 107 (238)
T ss_dssp ----------
T ss_pred HHHHHHHHhc
Confidence 5566665444
No 63
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=50.98 E-value=39 Score=35.43 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcccCCCC
Q 008166 526 ACVSCYYVCYAQNPDNR 542 (575)
Q Consensus 526 ~~VdTifvCfaeDpe~~ 542 (575)
...|-+--|...||+.|
T Consensus 303 ~l~~li~~~l~~~P~~R 319 (353)
T PLN00034 303 EFRHFISCCLQREPAKR 319 (353)
T ss_pred HHHHHHHHHccCChhhC
Confidence 44566667999999964
No 64
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.10 E-value=33 Score=36.89 Aligned_cols=10 Identities=40% Similarity=0.378 Sum_probs=4.1
Q ss_pred CCCCCCCCCC
Q 008166 89 APRIATPPPS 98 (575)
Q Consensus 89 ~~~~~~~~~~ 98 (575)
+++|+.|-.+
T Consensus 400 a~sP~rp~t~ 409 (488)
T KOG3895|consen 400 AESPARPTTS 409 (488)
T ss_pred CCCCCCCccc
Confidence 4444443333
No 65
>PF15451 DUF4632: Domain of unknown function (DUF4632)
Probab=49.51 E-value=6.5 Score=31.46 Aligned_cols=20 Identities=45% Similarity=0.697 Sum_probs=9.9
Q ss_pred hhhhcCCCCCCCchhhhhhhccc
Q 008166 15 KEEEEGGGEGGGEEEVKDVEKGE 37 (575)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~ 37 (575)
||.+|.|+|+|||| +-|||.
T Consensus 6 kesgdad~e~d~e~---ese~ga 25 (71)
T PF15451_consen 6 KESGDADGEADEEE---ESEKGA 25 (71)
T ss_pred cccccccccccccc---ccccCC
Confidence 45555555555333 345564
No 66
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=48.80 E-value=11 Score=47.70 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=7.4
Q ss_pred chhhHhHHHhhcCCch
Q 008166 431 GNGWAYVQIAAYGKGF 446 (575)
Q Consensus 431 ~N~~Ayi~iAI~G~~F 446 (575)
+|+--|--+.|.-+..
T Consensus 636 ~nk~~~~niem~p~~l 651 (2849)
T PTZ00415 636 INKAKYANIEIFPKML 651 (2849)
T ss_pred cccccccChhccchhh
Confidence 4554444445544433
No 67
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=48.48 E-value=6.9 Score=43.93 Aligned_cols=27 Identities=37% Similarity=0.684 Sum_probs=14.4
Q ss_pred hhhhhhhhcCCCCCCCchhhhhhhccc
Q 008166 11 ETQNKEEEEGGGEGGGEEEVKDVEKGE 37 (575)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (575)
++||.+.++++.|+++|||++++|..|
T Consensus 412 dsen~d~~~~s~E~~~eee~e~~ee~~ 438 (739)
T KOG2140|consen 412 DSENEDDEDGSSEDDDEEEDESVEEDE 438 (739)
T ss_pred ccccccccccccccccccccccccccc
Confidence 334444455555566666665555443
No 68
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=47.90 E-value=6.1 Score=41.12 Aligned_cols=29 Identities=7% Similarity=-0.165 Sum_probs=0.0
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008166 189 RVLKYLLPQVEAASLLSISLSFSWQKAVR 217 (575)
Q Consensus 189 ~dl~~~~~~i~~~~~is~vls~iwl~llr 217 (575)
+|+..+...++.++++-+++-.+.+.++|
T Consensus 45 sd~t~~a~~vl~sfAvvliiIIiIImlF~ 73 (381)
T PF05297_consen 45 SDLTQGALTVLYSFAVVLIIIIIIIMLFK 73 (381)
T ss_dssp -----------------------------
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333444455555544444555555
No 69
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=47.33 E-value=8.1 Score=46.41 Aligned_cols=12 Identities=17% Similarity=0.207 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 008166 206 ISLSFSWQKAVR 217 (575)
Q Consensus 206 ~vls~iwl~llr 217 (575)
++.|++|+.++-
T Consensus 938 Fi~SIiwIsi~S 949 (1096)
T TIGR00927 938 FLGSIMWIAMFS 949 (1096)
T ss_pred HHHHHHHHHHHH
Confidence 334444544333
No 70
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=47.21 E-value=41 Score=40.96 Aligned_cols=7 Identities=29% Similarity=0.487 Sum_probs=3.3
Q ss_pred CCCCcch
Q 008166 2 GASDPVV 8 (575)
Q Consensus 2 ~~~~~~~ 8 (575)
|+.|-.|
T Consensus 5 G~NewlV 11 (1228)
T PRK12270 5 GQNEWLV 11 (1228)
T ss_pred CcchHHH
Confidence 4444444
No 71
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=47.17 E-value=14 Score=41.30 Aligned_cols=15 Identities=7% Similarity=-0.026 Sum_probs=8.1
Q ss_pred cCCchhHhHHHHHHH
Q 008166 442 YGKGFVQASQDTWAL 456 (575)
Q Consensus 442 ~G~~F~~SAk~a~~L 456 (575)
.+++=|.-+|.....
T Consensus 375 ESCGqCtPCReGt~~ 389 (461)
T PLN03132 375 ESCGQCTPCREGTGW 389 (461)
T ss_pred cCCCCCCChhhHHHH
Confidence 455556555555443
No 72
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=46.47 E-value=9.2 Score=48.23 Aligned_cols=8 Identities=13% Similarity=0.281 Sum_probs=3.5
Q ss_pred chhHhHHH
Q 008166 445 GFVQASQD 452 (575)
Q Consensus 445 ~F~~SAk~ 452 (575)
+|-.-||.
T Consensus 697 p~n~i~k~ 704 (2849)
T PTZ00415 697 PFNHIAKK 704 (2849)
T ss_pred ehhhhhHH
Confidence 34444443
No 73
>PRK08763 single-stranded DNA-binding protein; Provisional
Probab=46.14 E-value=37 Score=32.72 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=27.4
Q ss_pred hhcccceeeeeeecCCCccccCCCCCCCCCcccccccccCCC
Q 008166 33 VEKGEVVVEEKVVDSNSNVNINNINGEQRGFNASMMQTLNPT 74 (575)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (575)
+.||..|.-|--+..++-.+.++.++..-+..+..++.+..-
T Consensus 70 L~KGs~V~VeGrL~~~~y~dkdG~kr~~~eIva~~i~~L~~~ 111 (164)
T PRK08763 70 LRKGSQCYIEGSIRYDKFTGQDGQERYVTEIVADEMQMLGGR 111 (164)
T ss_pred cCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEeEEEECCCC
Confidence 568876666666666666666665556666667777766543
No 74
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=45.78 E-value=26 Score=38.44 Aligned_cols=17 Identities=35% Similarity=0.602 Sum_probs=6.6
Q ss_pred CCCCCCCCCCCCCCCCC
Q 008166 111 PPSQPSRPRSISTSPPA 127 (575)
Q Consensus 111 ~~~~~~~~~~~~~~~~~ 127 (575)
+|++|++++..++.|-.
T Consensus 177 l~~~Ppaqp~~Pt~pss 193 (523)
T KOG3837|consen 177 LPSQPPAQPTAPTTPSS 193 (523)
T ss_pred CCCCCCCCCCCCCCCCC
Confidence 33344444333333333
No 75
>TIGR00859 ENaC sodium channel transporter. This model is designed from the vertebrate members of the ENaC family.
Probab=45.44 E-value=27 Score=40.31 Aligned_cols=6 Identities=17% Similarity=0.495 Sum_probs=2.2
Q ss_pred CCCCCC
Q 008166 95 PPPSQP 100 (575)
Q Consensus 95 ~~~~~~ 100 (575)
|..+.+
T Consensus 555 ~~~~~~ 560 (595)
T TIGR00859 555 SADTPP 560 (595)
T ss_pred CCCCcc
Confidence 333333
No 76
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=45.33 E-value=43 Score=37.00 Aligned_cols=8 Identities=25% Similarity=0.634 Sum_probs=4.4
Q ss_pred cccccCCC
Q 008166 84 GRRVTAPR 91 (575)
Q Consensus 84 ~~~~~~~~ 91 (575)
-.|+..||
T Consensus 282 PkR~~SPP 289 (458)
T PF10446_consen 282 PKRLRSPP 289 (458)
T ss_pred cccccCCC
Confidence 35555665
No 77
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.07 E-value=48 Score=38.48 Aligned_cols=8 Identities=25% Similarity=0.414 Sum_probs=4.5
Q ss_pred hhHHhhHH
Q 008166 189 RVLKYLLP 196 (575)
Q Consensus 189 ~dl~~~~~ 196 (575)
.++...|.
T Consensus 500 e~l~~~W~ 507 (614)
T PRK14971 500 EDLQYYWQ 507 (614)
T ss_pred HHHHHHHH
Confidence 35666664
No 78
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.73 E-value=63 Score=37.38 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=12.1
Q ss_pred CCCCCCCcccccccccCCCCC
Q 008166 56 INGEQRGFNASMMQTLNPTNP 76 (575)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~p 76 (575)
+|+..+|-+-.++|.++|+-=
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~ 72 (922)
T KOG2677|consen 52 GHTGDAPTASEPVQELSPTPE 72 (922)
T ss_pred CCcCCCCCccCcccccCCCcc
Confidence 444445555566777777643
No 79
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=42.96 E-value=51 Score=36.04 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=5.7
Q ss_pred CCCCCCCCCCCCC
Q 008166 98 SQPSRQAPRIATP 110 (575)
Q Consensus 98 ~~~~~~~~~~~~~ 110 (575)
-||.++||.+.+.
T Consensus 413 ~~pl~~Pp~~~~~ 425 (462)
T KOG2199|consen 413 QQPLQQPPNSNPA 425 (462)
T ss_pred cCCCCCCCccCCC
Confidence 3444444444443
No 80
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=42.89 E-value=33 Score=35.23 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=9.6
Q ss_pred HHHHHHHhhhcccccccc
Q 008166 162 IGLVGFLVFKGIQGLILA 179 (575)
Q Consensus 162 i~~~~~~~~~~~~~~~~~ 179 (575)
.+.-+++.+.++.++.+.
T Consensus 147 GVAGG~lL~n~i~~lF~~ 164 (247)
T PF09849_consen 147 GVAGGMLLANGIESLFGG 164 (247)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 344445556666665544
No 81
>KOG4090 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.87 E-value=51 Score=31.35 Aligned_cols=9 Identities=33% Similarity=0.523 Sum_probs=3.4
Q ss_pred CCCCCCCCC
Q 008166 102 RQAPRIATP 110 (575)
Q Consensus 102 ~~~~~~~~~ 110 (575)
|.|+..+.|
T Consensus 20 rap~~~aap 28 (157)
T KOG4090|consen 20 RAPSPAAAP 28 (157)
T ss_pred cCCCcccCC
Confidence 333333333
No 82
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=42.11 E-value=73 Score=29.70 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=26.9
Q ss_pred hhHhHHHhhcCCchhHhHHHHHHHHHhcCCcc
Q 008166 433 GWAYVQIAAYGKGFVQASQDTWALFERQEMEP 464 (575)
Q Consensus 433 ~~Ayi~iAI~G~~F~~SAk~a~~L~~~n~~~a 464 (575)
-++.-.+.+.++++.+|-|++|++.++|.++.
T Consensus 104 if~lp~~vle~~~~~~A~k~Sw~ltk~~~~~~ 135 (149)
T PF10110_consen 104 IFVLPLIVLENKSFKEALKESWQLTKGRFWRI 135 (149)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHcCcHHHH
Confidence 35667788999999999999999999876543
No 83
>COG3147 DedD Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.68 E-value=1.2e+02 Score=30.62 Aligned_cols=7 Identities=0% Similarity=-0.178 Sum_probs=2.6
Q ss_pred hhhhhhh
Q 008166 28 EEVKDVE 34 (575)
Q Consensus 28 ~~~~~~~ 34 (575)
+...+++
T Consensus 39 ~a~p~pp 45 (226)
T COG3147 39 AAIPLPP 45 (226)
T ss_pred cccCCCC
Confidence 3333333
No 84
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=41.32 E-value=36 Score=38.62 Aligned_cols=7 Identities=14% Similarity=0.648 Sum_probs=2.8
Q ss_pred Cchhhhh
Q 008166 26 GEEEVKD 32 (575)
Q Consensus 26 ~~~~~~~ 32 (575)
+|||.++
T Consensus 298 ~~~~L~~ 304 (562)
T TIGR01628 298 TDEKLRE 304 (562)
T ss_pred CHHHHHH
Confidence 3344443
No 85
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.50 E-value=72 Score=37.95 Aligned_cols=9 Identities=11% Similarity=0.006 Sum_probs=4.4
Q ss_pred cccccchhH
Q 008166 543 LFDSTIKDR 551 (575)
Q Consensus 543 ~~~~~~p~~ 551 (575)
+....+|++
T Consensus 730 L~k~IYP~L 738 (887)
T KOG1985|consen 730 LMKYIYPTL 738 (887)
T ss_pred HHhhhcccc
Confidence 334456663
No 86
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=39.80 E-value=53 Score=31.00 Aligned_cols=7 Identities=57% Similarity=0.719 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 008166 93 ATPPPSQ 99 (575)
Q Consensus 93 ~~~~~~~ 99 (575)
+|||-+-
T Consensus 113 apPpysy 119 (155)
T PF10873_consen 113 APPPYSY 119 (155)
T ss_pred CCCCccc
Confidence 3444433
No 87
>PF15471 TMEM171: Transmembrane protein family 171
Probab=39.69 E-value=89 Score=32.50 Aligned_cols=19 Identities=16% Similarity=0.475 Sum_probs=13.0
Q ss_pred CCCCCceEEEeCcccccCC
Q 008166 72 NPTNPLRIVINGGRRVTAP 90 (575)
Q Consensus 72 ~~~~p~~~~~~~~~~~~~~ 90 (575)
+-+.|.||++.+.--+-+|
T Consensus 203 qs~Ep~qVTVGDaViiFPP 221 (319)
T PF15471_consen 203 QSTEPVQVTVGDAVIIFPP 221 (319)
T ss_pred CCCCCEEEEecCEEEEcCC
Confidence 4567999998766555554
No 88
>PF14017 DUF4233: Protein of unknown function (DUF4233)
Probab=39.37 E-value=2.8e+02 Score=24.81 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 008166 221 KFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFC 278 (575)
Q Consensus 221 ~~~i~~~vw~~iil~~~~~i~~~~f~~~~~~~~~i~~ii~ai~~~ly~~~~r~RI~~a 278 (575)
|......-|..=+..++.++.. ...+++.++|+..+ .|..++|+||+.-
T Consensus 55 rpwa~~~g~~lQv~~i~~g~v~--------p~m~vvG~iF~~~W-~~~l~lg~~i~~~ 103 (107)
T PF14017_consen 55 RPWAYWLGWVLQVLLIAGGFVH--------PAMFVVGVIFAAVW-WYALYLGRRIDRR 103 (107)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4444445555444433333321 24566777888777 6777888888754
No 89
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=39.26 E-value=43 Score=36.41 Aligned_cols=15 Identities=7% Similarity=0.306 Sum_probs=5.8
Q ss_pred hhhhhhhhhhHHHHH
Q 008166 379 NLGSACLGSLFVPTI 393 (575)
Q Consensus 379 hfGSIcfGSLIvaiI 393 (575)
||+.+-=+++++++|
T Consensus 280 Hf~~rFGsAlLlS~I 294 (376)
T PRK13855 280 HFWQRFSGAMLLSVV 294 (376)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333444433
No 90
>PF15449 Retinal: Retinal protein
Probab=38.74 E-value=1e+02 Score=37.83 Aligned_cols=6 Identities=17% Similarity=0.108 Sum_probs=2.3
Q ss_pred cccccc
Q 008166 65 ASMMQT 70 (575)
Q Consensus 65 ~~~~~~ 70 (575)
.--+|+
T Consensus 1046 ~P~v~~ 1051 (1287)
T PF15449_consen 1046 LPSVQR 1051 (1287)
T ss_pred CCcCCC
Confidence 333444
No 91
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.38 E-value=46 Score=37.31 Aligned_cols=13 Identities=8% Similarity=0.038 Sum_probs=5.9
Q ss_pred ccccccccCCCCC
Q 008166 64 NASMMQTLNPTNP 76 (575)
Q Consensus 64 ~~~~~~~~~~~~p 76 (575)
..+|-||+++.-+
T Consensus 505 sLd~n~~fq~~~~ 517 (737)
T KOG1955|consen 505 SLDANQRFQAKKL 517 (737)
T ss_pred ccchhcccccccc
Confidence 3444455554443
No 92
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=38.19 E-value=47 Score=37.64 Aligned_cols=7 Identities=43% Similarity=0.401 Sum_probs=2.7
Q ss_pred cchHHHH
Q 008166 147 NKISLFL 153 (575)
Q Consensus 147 d~~~~~l 153 (575)
+.+..|+
T Consensus 332 ~vi~~p~ 338 (574)
T PF07462_consen 332 KVIALPL 338 (574)
T ss_pred ceeeccC
Confidence 3333343
No 93
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=37.87 E-value=7.8e+02 Score=29.42 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 008166 204 LSISLSFSWQKAVRVWPKF 222 (575)
Q Consensus 204 is~vls~iwl~llr~~~~~ 222 (575)
..++-+++|-.+...+-|.
T Consensus 214 G~iiG~li~G~LsDR~GRR 232 (742)
T TIGR01299 214 GMMVGAFFWGGLADKLGRK 232 (742)
T ss_pred HHHHHHHHHHHHHHHhCcH
Confidence 3444455555566655554
No 94
>COG5137 Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]
Probab=37.68 E-value=15 Score=36.74 Aligned_cols=21 Identities=43% Similarity=0.515 Sum_probs=9.2
Q ss_pred hhcCCCCCCCchhhhhhhccc
Q 008166 17 EEEGGGEGGGEEEVKDVEKGE 37 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~ 37 (575)
++..|.|+++|||+.+.+.||
T Consensus 183 eE~d~~EeeeDee~~~~~~gE 203 (279)
T COG5137 183 EESDGREEEEDEEVGSDSYGE 203 (279)
T ss_pred hhhccchhhhhhccccccccc
Confidence 334444444444444444444
No 95
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=37.41 E-value=95 Score=37.25 Aligned_cols=11 Identities=18% Similarity=0.462 Sum_probs=5.3
Q ss_pred CCchhHhHHHH
Q 008166 443 GKGFVQASQDT 453 (575)
Q Consensus 443 G~~F~~SAk~a 453 (575)
+..|+.+.++-
T Consensus 716 ~~~f~~~~~~f 726 (833)
T KOG1922|consen 716 GDPFSKVKKEF 726 (833)
T ss_pred cchhhhhhhhh
Confidence 34555555443
No 96
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=37.14 E-value=11 Score=35.90 Aligned_cols=6 Identities=0% Similarity=-0.191 Sum_probs=2.7
Q ss_pred hhHHhh
Q 008166 189 RVLKYL 194 (575)
Q Consensus 189 ~dl~~~ 194 (575)
.|+.+-
T Consensus 68 ~D~~KR 73 (157)
T PF07304_consen 68 DDIEKR 73 (157)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 454443
No 97
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=36.91 E-value=45 Score=35.60 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=11.3
Q ss_pred CCCCCCCCCCCCCCCCCCcccccc
Q 008166 115 PSRPRSISTSPPAPTPTPQQASRT 138 (575)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~ 138 (575)
|+|.+.--++|||+||-++++...
T Consensus 39 ppP~~~~~~~PpPq~~~~~~~~~g 62 (362)
T KOG1546|consen 39 PPPQPSSYPNPPPQPPYQYPQMAG 62 (362)
T ss_pred CCCCCCCCCCCCCCCCCCCccccc
Confidence 333444456665554444444433
No 98
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=36.78 E-value=16 Score=38.45 Aligned_cols=30 Identities=40% Similarity=0.633 Sum_probs=19.5
Q ss_pred chhhhhhhhhhhcCCC---------CCCCchhhhhhhccc
Q 008166 7 VVERETQNKEEEEGGG---------EGGGEEEVKDVEKGE 37 (575)
Q Consensus 7 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 37 (575)
.+.|-.|+ |||+++| +|+|||++||+..+|
T Consensus 71 ~lkr~~q~-e~eddgg~~gi~sgp~~~gd~~~~edla~~E 109 (383)
T KOG4317|consen 71 ELKRKMQK-EEEDDGGWSGIESGPPLDGDDEEQEDLADWE 109 (383)
T ss_pred HHHHHHhh-hhccCCcccccccCCCCCCchHhHHhcCchh
Confidence 35455555 4444443 467888999988876
No 99
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.34 E-value=56 Score=37.98 Aligned_cols=6 Identities=33% Similarity=0.778 Sum_probs=2.5
Q ss_pred HHHHHH
Q 008166 211 SWQKAV 216 (575)
Q Consensus 211 iwl~ll 216 (575)
.|..+.
T Consensus 505 ~W~~~~ 510 (614)
T PRK14971 505 YWQEFA 510 (614)
T ss_pred HHHHHH
Confidence 444333
No 100
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=35.73 E-value=5e+02 Score=28.50 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008166 198 VEAASLLSISLSFSWQK 214 (575)
Q Consensus 198 i~~~~~is~vls~iwl~ 214 (575)
...+.++++++-+++++
T Consensus 250 ~~~a~~ig~ilV~l~~~ 266 (397)
T TIGR01129 250 GIKAGLIGLVLVLVFMI 266 (397)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555554444444
No 101
>PF15195 TMEM210: TMEM210 family
Probab=35.62 E-value=45 Score=29.25 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=6.0
Q ss_pred CcccccccccC
Q 008166 62 GFNASMMQTLN 72 (575)
Q Consensus 62 ~~~~~~~~~~~ 72 (575)
..+++|++-+.
T Consensus 81 DleVsmm~~Le 91 (116)
T PF15195_consen 81 DLEVSMMPPLE 91 (116)
T ss_pred CccccccCccc
Confidence 34566665543
No 102
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=35.05 E-value=81 Score=34.17 Aligned_cols=13 Identities=8% Similarity=-0.008 Sum_probs=5.0
Q ss_pred CCCCCCCcccccc
Q 008166 56 INGEQRGFNASMM 68 (575)
Q Consensus 56 ~~~~~~~~~~~~~ 68 (575)
|+--..|.....+
T Consensus 134 gdtV~~g~~la~i 146 (457)
T KOG0559|consen 134 GDTVTPGQKLAKI 146 (457)
T ss_pred CCcccCCceeEEe
Confidence 3333344443333
No 103
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=34.95 E-value=5.2e+02 Score=26.52 Aligned_cols=6 Identities=17% Similarity=0.279 Sum_probs=2.3
Q ss_pred hhhhhh
Q 008166 381 GSACLG 386 (575)
Q Consensus 381 GSIcfG 386 (575)
|++.|-
T Consensus 203 gAllf~ 208 (237)
T KOG2322|consen 203 GALLFC 208 (237)
T ss_pred HHHHHh
Confidence 333333
No 104
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=34.51 E-value=22 Score=41.31 Aligned_cols=7 Identities=14% Similarity=0.591 Sum_probs=3.5
Q ss_pred HhHHHhh
Q 008166 435 AYVQIAA 441 (575)
Q Consensus 435 Ayi~iAI 441 (575)
.|+.+|+
T Consensus 557 ~~lVvGv 563 (622)
T PF02724_consen 557 TYLVVGV 563 (622)
T ss_pred eEEEEEe
Confidence 4444555
No 105
>PF15470 DUF4637: Domain of unknown function (DUF4637)
Probab=33.34 E-value=19 Score=33.77 Aligned_cols=20 Identities=30% Similarity=0.165 Sum_probs=10.1
Q ss_pred cccCcccccchHHHHHHHHH
Q 008166 139 ALNSKKYTNKISLFLFVLHM 158 (575)
Q Consensus 139 ~~~s~~~~d~~~~~lF~~~l 158 (575)
++--+|+.+.=+-+.|+.|-
T Consensus 139 ILfCkKC~tLHs~payVaHc 158 (173)
T PF15470_consen 139 ILFCKKCRTLHSHPAYVAHC 158 (173)
T ss_pred eeeehhhccccCchHHHHHH
Confidence 44445554444555555553
No 106
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=32.39 E-value=81 Score=33.50 Aligned_cols=9 Identities=33% Similarity=0.357 Sum_probs=3.6
Q ss_pred HHHHHHHHh
Q 008166 369 QFCFQRALT 377 (575)
Q Consensus 369 ~~S~~ra~t 377 (575)
++-+.|+++
T Consensus 334 RADIE~ALR 342 (407)
T PF04625_consen 334 RADIERALR 342 (407)
T ss_pred HHHHHHHHH
Confidence 333444443
No 107
>PRK10649 hypothetical protein; Provisional
Probab=32.33 E-value=2e+02 Score=33.16 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhHH
Q 008166 204 LSISLSFSWQKAVRVWPKFMVH 225 (575)
Q Consensus 204 is~vls~iwl~llr~~~~~~i~ 225 (575)
=+++++++|+..+-.+|+..-.
T Consensus 48 ~~~~~~~~~~~~~~l~p~~~~~ 69 (577)
T PRK10649 48 DALLFSSLWLIPVFLFPRRIRI 69 (577)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH
Confidence 3666777888777777777443
No 108
>PRK10263 DNA translocase FtsK; Provisional
Probab=32.07 E-value=58 Score=40.88 Aligned_cols=10 Identities=30% Similarity=0.348 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 008166 392 TIEALRIVAR 401 (575)
Q Consensus 392 iI~~lR~il~ 401 (575)
+.+.+|++.+
T Consensus 1075 a~~aLr~lV~ 1084 (1355)
T PRK10263 1075 AANALRWCVN 1084 (1355)
T ss_pred HHHHHHHHHH
Confidence 3455555553
No 109
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=30.99 E-value=26 Score=39.63 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=8.9
Q ss_pred ecCCCccccCCCCCCCCCcc
Q 008166 45 VDSNSNVNINNINGEQRGFN 64 (575)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~ 64 (575)
+|-||..-..++-.|-++..
T Consensus 245 ~D~~se~~ee~~~~Eee~~~ 264 (678)
T KOG0127|consen 245 TDGNSEAFEEGEESEEEEDD 264 (678)
T ss_pred ccccchhhhccccccccccc
Confidence 45555554433333433333
No 110
>PTZ00249 variable surface protein Vir28; Provisional
Probab=30.65 E-value=81 Score=35.53 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=20.2
Q ss_pred hhhhhhhcc--cceeeeeeecCCCccccCCCCCCCCCcccccccccCCCCCceE
Q 008166 28 EEVKDVEKG--EVVVEEKVVDSNSNVNINNINGEQRGFNASMMQTLNPTNPLRI 79 (575)
Q Consensus 28 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 79 (575)
||+|.|-.- .+.-+|+---..+.+.--+-||++++-+ ||+||..+
T Consensus 220 ee~k~~~~~~~~~~~~~~~~~~~~s~ss~~~h~r~~~~t-------~~~~~vs~ 266 (516)
T PTZ00249 220 EEQKAVTAHAHRRISGEARPPKHISFSSPHAHGRPPVET-------RPPNPVSV 266 (516)
T ss_pred ccccccchhhhccccccCCCCccccccCchhccCCCccc-------CCCCceec
Confidence 455555422 1223333333333333334555555543 77777544
No 111
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=30.65 E-value=44 Score=33.77 Aligned_cols=15 Identities=0% Similarity=-0.239 Sum_probs=9.5
Q ss_pred CcccccccccCCCCC
Q 008166 62 GFNASMMQTLNPTNP 76 (575)
Q Consensus 62 ~~~~~~~~~~~~~~p 76 (575)
...-.++|++++++|
T Consensus 136 ~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 136 CAVPFALDLYQGLEL 150 (267)
T ss_pred hcCcHHhhhhcccCc
Confidence 334456677777777
No 112
>PRK14849 putative lipoprotein/autotransporter domain-containing protein; Provisional
Probab=30.51 E-value=30 Score=44.39 Aligned_cols=9 Identities=11% Similarity=0.386 Sum_probs=4.3
Q ss_pred eeeeeeeee
Q 008166 353 CRVISLYYI 361 (575)
Q Consensus 353 Ag~va~WYF 361 (575)
.|+.++||-
T Consensus 1602 vG~YaTWy~ 1610 (1806)
T PRK14849 1602 AGLYATWYQ 1610 (1806)
T ss_pred EEEEEEEEc
Confidence 344455553
No 113
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=30.23 E-value=20 Score=38.63 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=0.0
Q ss_pred hcccceeeeeeecCCCcc
Q 008166 34 EKGEVVVEEKVVDSNSNV 51 (575)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~ 51 (575)
++.+..++|..-||...+
T Consensus 302 ~~~~~~~~~~~~~~~dd~ 319 (375)
T PF03153_consen 302 EDDEDAINSDLDDSDDDV 319 (375)
T ss_dssp ------------------
T ss_pred ccccccccCCcCCccccc
Confidence 333445555555555444
No 114
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.63 E-value=23 Score=40.79 Aligned_cols=24 Identities=13% Similarity=-0.060 Sum_probs=16.7
Q ss_pred HHHHHHhcccCCCCcccccchhHHHH
Q 008166 529 SCYYVCYAQNPDNRLFDSTIKDRLSL 554 (575)
Q Consensus 529 dTifvCfaeDpe~~~~~~~~p~~~~~ 554 (575)
+-.+--+|.+|| +...+-.++|+.
T Consensus 657 ~~~~~~~a~~p~--~s~~sa~~L~~~ 680 (704)
T KOG2153|consen 657 VGATGEGALPPE--LSNLSAAELFEQ 680 (704)
T ss_pred CCccCcCCCCcc--ccCchHHHHhhh
Confidence 344566788888 566677777776
No 115
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=29.30 E-value=29 Score=35.15 Aligned_cols=8 Identities=13% Similarity=0.256 Sum_probs=4.1
Q ss_pred CCCCCCCc
Q 008166 56 INGEQRGF 63 (575)
Q Consensus 56 ~~~~~~~~ 63 (575)
+|||..|.
T Consensus 200 eh~hssgl 207 (265)
T PF06409_consen 200 EHHHSSGL 207 (265)
T ss_pred HhccCCCC
Confidence 45555553
No 116
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=29.29 E-value=58 Score=38.16 Aligned_cols=11 Identities=45% Similarity=0.908 Sum_probs=7.0
Q ss_pred chhHHHHHHHH
Q 008166 411 EFMFSCAHCCL 421 (575)
Q Consensus 411 ~~l~~c~~C~l 421 (575)
++..-.++||+
T Consensus 653 EI~~VllhC~l 663 (822)
T KOG2141|consen 653 EIARVLLHCCL 663 (822)
T ss_pred HHHHHHHHHHh
Confidence 55566677765
No 117
>PF14816 FAM178: Family of unknown function, FAM178
Probab=28.29 E-value=22 Score=38.63 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=16.6
Q ss_pred CccccCCCCCCCCCccccccccc
Q 008166 49 SNVNINNINGEQRGFNASMMQTL 71 (575)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~ 71 (575)
-+|..+.+-+.|+|-.++++.+.
T Consensus 74 fsv~~~~Ip~~HPGE~IF~~~~~ 96 (377)
T PF14816_consen 74 FSVSLQAIPDVHPGEEIFNLSKS 96 (377)
T ss_pred hchhhccCCCCCCchhhcCcccc
Confidence 34446788899999999865544
No 118
>PHA03160 hypothetical protein; Provisional
Probab=28.28 E-value=42 Score=37.55 Aligned_cols=10 Identities=30% Similarity=0.418 Sum_probs=4.1
Q ss_pred hhhhhhhhhc
Q 008166 10 RETQNKEEEE 19 (575)
Q Consensus 10 ~~~~~~~~~~ 19 (575)
|-..||+||+
T Consensus 327 ~~~krkree~ 336 (499)
T PHA03160 327 RPNKRKREDF 336 (499)
T ss_pred cccccccccc
Confidence 3344444433
No 119
>KOG2181 consensus LIM domain binding protein LDB1/NLI/CLIM [Transcription]
Probab=27.73 E-value=96 Score=32.84 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=16.9
Q ss_pred cCCCCCCCCCcccccccccCCCCC
Q 008166 53 INNINGEQRGFNASMMQTLNPTNP 76 (575)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~p 76 (575)
.+..|++|.|+.-++-|.-||..-
T Consensus 358 ~~~~n~~~~g~~~sP~~g~np~~~ 381 (415)
T KOG2181|consen 358 RNMMNQHHPGMQPSPGQGHNPPHS 381 (415)
T ss_pred ccchhccCCCCCCCccccCCCcch
Confidence 355677777777777777777654
No 120
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=27.42 E-value=16 Score=41.52 Aligned_cols=8 Identities=38% Similarity=0.389 Sum_probs=3.0
Q ss_pred ccccCccc
Q 008166 138 TALNSKKY 145 (575)
Q Consensus 138 ~~~~s~~~ 145 (575)
-.+.|.|.
T Consensus 559 i~l~S~KM 566 (618)
T PF05053_consen 559 ITLYSQKM 566 (618)
T ss_dssp CC--SHHH
T ss_pred EEeehHHH
Confidence 34455554
No 121
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=27.40 E-value=30 Score=39.93 Aligned_cols=6 Identities=17% Similarity=-0.025 Sum_probs=2.2
Q ss_pred cccccc
Q 008166 64 NASMMQ 69 (575)
Q Consensus 64 ~~~~~~ 69 (575)
|+.|.+
T Consensus 936 n~~Rq~ 941 (952)
T KOG1834|consen 936 NNQRQV 941 (952)
T ss_pred ccceee
Confidence 333333
No 122
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=27.25 E-value=21 Score=38.74 Aligned_cols=8 Identities=13% Similarity=-0.155 Sum_probs=0.0
Q ss_pred hhhhHHhh
Q 008166 187 EKRVLKYL 194 (575)
Q Consensus 187 ~~~dl~~~ 194 (575)
++.|+.++
T Consensus 85 ELDdmM~s 92 (386)
T PF01698_consen 85 ELDDMMNS 92 (386)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 55665554
No 123
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=27.08 E-value=34 Score=36.56 Aligned_cols=8 Identities=50% Similarity=0.675 Sum_probs=3.1
Q ss_pred eeeeeecC
Q 008166 40 VEEKVVDS 47 (575)
Q Consensus 40 ~~~~~~~~ 47 (575)
+||.-.+|
T Consensus 289 ~Eeeplns 296 (348)
T KOG2652|consen 289 VEEEPLNS 296 (348)
T ss_pred cccccccC
Confidence 34443333
No 124
>PHA03356 tegument protein UL11; Provisional
Probab=26.75 E-value=1.3e+02 Score=25.82 Aligned_cols=6 Identities=50% Similarity=0.850 Sum_probs=5.0
Q ss_pred ceEEEe
Q 008166 77 LRIVIN 82 (575)
Q Consensus 77 ~~~~~~ 82 (575)
|||++|
T Consensus 52 lrvVTq 57 (93)
T PHA03356 52 LRVVTQ 57 (93)
T ss_pred ceEEec
Confidence 788887
No 125
>PF05858 BIV_Env: Bovine immunodeficiency virus surface protein (SU); InterPro: IPR008411 (Bovine immunodeficiency virus) (BIV), like the human immunodeficiency virus, is a lentivirus. It shows a great deal of genomic diversity, mostly in the viral envelope gene []. This property of the BIV group of viruses may play an important role in the pathobiology of the virus, particularly the conserved (C) 2, hypervariable (V) 1, V2 and C3 regions []. The surface protein (SU) attaches the virus to the host cell by binding to its receptor. This interaction triggers the refolding of the transmembrane protein (TM) and is thought to activate its fusogenic potential by unmasking its fusion peptide. Fusion occurs at the host cell plasma membrane. The transmembrane protein (TM) acts as a class I viral fusion protein. Under the current model, the protein has at least 3 conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes. Membranes fusion leads to delivery of the nucleocapsid into the cytoplasm. ; GO: 0016021 integral to membrane, 0030120 vesicle coat
Probab=26.48 E-value=19 Score=39.31 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=19.6
Q ss_pred hhhhhhhhhcCCCCCCCc--hhhhhhhcccceeee
Q 008166 10 RETQNKEEEEGGGEGGGE--EEVKDVEKGEVVVEE 42 (575)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 42 (575)
.|+.|+|++|++||.|+- --|||++||.-.-.|
T Consensus 3 qdl~r~ErgE~~G~s~elr~LlQe~i~~grLT~rE 37 (548)
T PF05858_consen 3 QDLDRVERGEGEGRSEELRDLLQEDIDKGRLTARE 37 (548)
T ss_pred ccccccccccccCCcchHHHHHHHHhhcCcccHHH
Confidence 355667766666555442 247888888643333
No 126
>PHA03378 EBNA-3B; Provisional
Probab=26.46 E-value=2.1e+02 Score=33.64 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=4.3
Q ss_pred CCCccccccc
Q 008166 130 PTPQQASRTA 139 (575)
Q Consensus 130 ~~~~~~~~~~ 139 (575)
|+||-++.+.
T Consensus 778 ~pPq~~P~~~ 787 (991)
T PHA03378 778 PPPQAPPAPQ 787 (991)
T ss_pred CCCCCCCccc
Confidence 3444444443
No 127
>PF05350 GSK-3_bind: Glycogen synthase kinase-3 binding; InterPro: IPR008014 Glycogen synthase kinase-3 (GSK-3) sequentially phosphorylates four serine residues on glycogen synthase (GS), in the sequence SxxxSxxxSxxx-SxxxS(p), by recognising and phosphorylating the first serine in the sequence motif SxxxS(P) (where S(p) represents a phosphoserine). Interaction of GSK-3 with a peptide derived from GSK-3 binding protein prevents GSK-3 interaction with Axin. This interaction thereby inhibits the Axin-dependent phosphorylation of beta-catenin by GSK-3 [].; PDB: 1GNG_Y 3ZRM_X 3ZRK_Y 4AFJ_Y 3ZRL_Y.
Probab=26.38 E-value=22 Score=35.29 Aligned_cols=13 Identities=69% Similarity=0.969 Sum_probs=0.0
Q ss_pred hhcCCCCCCCchh
Q 008166 17 EEEGGGEGGGEEE 29 (575)
Q Consensus 17 ~~~~~~~~~~~~~ 29 (575)
|||.+.|.++|||
T Consensus 8 ~~e~g~~~~g~e~ 20 (217)
T PF05350_consen 8 EEEAGEEAEGEEE 20 (217)
T ss_dssp -------------
T ss_pred hhcccccccCccc
Confidence 4444444444433
No 128
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=26.23 E-value=78 Score=31.00 Aligned_cols=6 Identities=17% Similarity=0.180 Sum_probs=2.3
Q ss_pred cCCCCC
Q 008166 71 LNPTNP 76 (575)
Q Consensus 71 ~~~~~p 76 (575)
+++..|
T Consensus 159 ~~~~a~ 164 (225)
T KOG3397|consen 159 QNAAAS 164 (225)
T ss_pred hccccC
Confidence 344333
No 129
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.81 E-value=1.1e+02 Score=36.63 Aligned_cols=28 Identities=29% Similarity=0.083 Sum_probs=16.2
Q ss_pred hchhhHhHHHhhc------------CCchhHhHHHHHHHH
Q 008166 430 CGNGWAYVQIAAY------------GKGFVQASQDTWALF 457 (575)
Q Consensus 430 y~N~~Ayi~iAI~------------G~~F~~SAk~a~~L~ 457 (575)
|+..+|||=+|-- =+...+|=+|..+|.
T Consensus 608 F~t~~ayvDvAtlg~v~~~TgG~vy~Y~~F~a~~D~~rl~ 647 (1007)
T KOG1984|consen 608 FLTPNAYVDVATLGVVPALTGGQVYKYYPFQALTDGPRLL 647 (1007)
T ss_pred EEcccceeeeeeecccccccCceeEEecchhhcccHHHHH
Confidence 5666777766533 234446666666663
No 130
>PF10529 Hist_rich_Ca-bd: Histidine-rich Calcium-binding repeat region; InterPro: IPR019552 This entry represents a histidine-rich calcium-binding repeat which appears in proteins called histidine-rich-calcium binding proteins (HRC). HRC is a high capacity, low affinity Ca2+-binding protein, residing in the lumen of the sarcoplasmic reticulum. HRC binds directly to triadin. This binding interaction occurs between the histidine-rich region of HRC and multiple clusters of charged amino acids, named KEKE motifs, in the lumenal domain of triadin. This repeat is found in the acidic region of the protein, which can be long and variable. There is also a cysteine-rich region further towards the C terminus []. HRC may regulate sarcoplasmic reticular calcium transport, play a critical role in maintaining calcium homeostasis, and function in the heart. HRC is a candidate regulator of sarcoplasmic reticular calcium uptake.
Probab=25.81 E-value=31 Score=20.21 Aligned_cols=8 Identities=25% Similarity=0.397 Sum_probs=3.2
Q ss_pred CCCCCCch
Q 008166 21 GGEGGGEE 28 (575)
Q Consensus 21 ~~~~~~~~ 28 (575)
|+++|+||
T Consensus 5 gH~~eeDe 12 (15)
T PF10529_consen 5 GHREEEDE 12 (15)
T ss_pred cccccccc
Confidence 34443333
No 131
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.47 E-value=94 Score=30.50 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=5.4
Q ss_pred Ccchhhhhhhhhh
Q 008166 5 DPVVERETQNKEE 17 (575)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (575)
+|+-..+.-|+|.
T Consensus 8 ~~~~~~~~~~g~k 20 (222)
T KOG4514|consen 8 IPGSTKTRPNGEK 20 (222)
T ss_pred CCCCcccccchhh
Confidence 3444344444443
No 132
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.44 E-value=1.3e+02 Score=34.98 Aligned_cols=6 Identities=17% Similarity=0.119 Sum_probs=2.4
Q ss_pred HHhhHH
Q 008166 191 LKYLLP 196 (575)
Q Consensus 191 l~~~~~ 196 (575)
++.-|.
T Consensus 505 l~~~w~ 510 (620)
T PRK14954 505 LRMEWN 510 (620)
T ss_pred HHHHHH
Confidence 333444
No 133
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=24.92 E-value=1.4e+02 Score=35.46 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhhh-cCcchhhHH
Q 008166 278 CCKVLIISLQPVSK-FSDLNQPTY 300 (575)
Q Consensus 278 ai~iLk~As~~i~~-~p~l~~~~i 300 (575)
...++..|.+..-+ +.-+++++.
T Consensus 424 s~evf~l~k~l~~eKntNilipT~ 447 (911)
T PF05086_consen 424 SDEVFDLSKRLSFEKNTNILIPTQ 447 (911)
T ss_pred cHHHHHHhhheEeeccccEEeeec
Confidence 34555555554433 555554443
No 134
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=24.52 E-value=1.9e+02 Score=36.35 Aligned_cols=14 Identities=7% Similarity=0.059 Sum_probs=7.7
Q ss_pred HHHHHHHHhcccCC
Q 008166 527 CVSCYYVCYAQNPD 540 (575)
Q Consensus 527 ~VdTifvCfaeDpe 540 (575)
.+-++|.|+..+++
T Consensus 917 ~i~~~~~~q~~~~~ 930 (1406)
T KOG1146|consen 917 IIKACYEAQRTPTM 930 (1406)
T ss_pred HHHHHHhhccCChH
Confidence 45555666655554
No 135
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=24.35 E-value=33 Score=37.56 Aligned_cols=46 Identities=15% Similarity=0.063 Sum_probs=29.4
Q ss_pred HHHhchhhHhHHHhhcCCchhHhHHHHHHHHHhcCCcceehhchhH
Q 008166 427 IFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEMEPIVDSDITS 472 (575)
Q Consensus 427 ~l~y~N~~Ayi~iAI~G~~F~~SAk~a~~L~~~n~~~alv~d~l~~ 472 (575)
+-+|+=--..=-+||||-.=-+--..+.+.|+.+--+.+|.-|+.+
T Consensus 437 IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVAS 482 (610)
T KOG0341|consen 437 IHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVAS 482 (610)
T ss_pred HHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchh
Confidence 3444444444457999987777667778888776666666554543
No 136
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=23.83 E-value=67 Score=29.34 Aligned_cols=6 Identities=17% Similarity=0.025 Sum_probs=3.0
Q ss_pred hhhhHH
Q 008166 271 VSQRIG 276 (575)
Q Consensus 271 ~r~RI~ 276 (575)
.|||.+
T Consensus 23 ~rRR~r 28 (130)
T PF12273_consen 23 NRRRRR 28 (130)
T ss_pred HHHHhh
Confidence 355554
No 137
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=23.81 E-value=26 Score=37.98 Aligned_cols=10 Identities=30% Similarity=0.853 Sum_probs=4.4
Q ss_pred HHHHH-HHHHH
Q 008166 416 CAHCC-LRIME 425 (575)
Q Consensus 416 c~~C~-l~~le 425 (575)
.++|. |.|++
T Consensus 305 yvhcyalhcld 315 (386)
T PF01698_consen 305 YVHCYALHCLD 315 (386)
T ss_dssp CHHHHHHHHH-
T ss_pred heeeeeeeccC
Confidence 44443 46664
No 138
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=23.66 E-value=2.9e+02 Score=27.86 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=11.5
Q ss_pred cccccccCcccccchHHH
Q 008166 135 ASRTALNSKKYTNKISLF 152 (575)
Q Consensus 135 ~~~~~~~s~~~~d~~~~~ 152 (575)
+..|--+..|+--.+|.+
T Consensus 118 k~~CEen~~K~amLIClI 135 (227)
T PF05399_consen 118 KEICEENNNKMAMLICLI 135 (227)
T ss_pred hhhhhcCccchhHHHHHH
Confidence 455555666776667766
No 139
>KOG4425 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.63 E-value=1.1e+02 Score=34.18 Aligned_cols=8 Identities=0% Similarity=0.044 Sum_probs=3.2
Q ss_pred cccccCCC
Q 008166 67 MMQTLNPT 74 (575)
Q Consensus 67 ~~~~~~~~ 74 (575)
-|-||.++
T Consensus 38 alkm~grp 45 (900)
T KOG4425|consen 38 ALKMQGRP 45 (900)
T ss_pred HHhhcCCC
Confidence 34444443
No 140
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.56 E-value=5.7e+02 Score=23.35 Aligned_cols=47 Identities=30% Similarity=0.492 Sum_probs=28.9
Q ss_pred chhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 008166 184 KRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILL 242 (575)
Q Consensus 184 ~~~~~~dl~~~~~~i~~~~~is~vls~iwl~llr~~~~~~i~~~vw~~iil~~~~~i~~ 242 (575)
++.++.|..++...+ ++++++++|=.+ .+.++ +|+..++.+..++.+
T Consensus 37 DKdellDViyW~rQV-----i~l~lGviwGi~------pL~G~-l~iv~f~~issgIvy 83 (129)
T KOG3415|consen 37 DKDELLDVIYWIRQV-----IGLILGVIWGII------PLVGF-LGIVLFLGISSGIVY 83 (129)
T ss_pred CHHHHHHHHHHHHHH-----HHHHHHHHHhhc------hhhhH-HHHHHHHHhhhhHHH
Confidence 345778888877655 577778887542 22222 466666666666653
No 141
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=23.56 E-value=3.7e+02 Score=25.18 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=5.2
Q ss_pred hhhhhhhhhcCCC
Q 008166 10 RETQNKEEEEGGG 22 (575)
Q Consensus 10 ~~~~~~~~~~~~~ 22 (575)
|..+||||.|-+.
T Consensus 29 rk~kK~~erer~r 41 (137)
T PF12868_consen 29 RKEKKKEERERER 41 (137)
T ss_pred HHhhhhhhhcccc
Confidence 4444444433333
No 142
>PF15324 TALPID3: Hedgehog signalling target
Probab=22.56 E-value=1.6e+02 Score=36.21 Aligned_cols=22 Identities=23% Similarity=0.108 Sum_probs=11.2
Q ss_pred hhcccceeeeeeecCCCccccC
Q 008166 33 VEKGEVVVEEKVVDSNSNVNIN 54 (575)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~ 54 (575)
||.-.|---.-.||..--||-+
T Consensus 874 Ve~~~ggglQLfVDAGvPVdsd 895 (1252)
T PF15324_consen 874 VEAAGGGGLQLFVDAGVPVDSD 895 (1252)
T ss_pred hhhccCceeEEEEeCCCCCCHH
Confidence 4432333345567766666644
No 143
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=22.52 E-value=54 Score=38.47 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=13.6
Q ss_pred hhhcccceeeeeeecCCCc
Q 008166 32 DVEKGEVVVEEKVVDSNSN 50 (575)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~ 50 (575)
|+++|.+..+|..+++++-
T Consensus 314 ~~ddgk~l~~ED~~e~~~~ 332 (823)
T KOG2147|consen 314 DFDDGKGLEEEDTVEKSSI 332 (823)
T ss_pred ccccccccccccchhhccc
Confidence 5667778888888866553
No 144
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=22.46 E-value=1.5e+02 Score=33.09 Aligned_cols=119 Identities=21% Similarity=0.273 Sum_probs=0.0
Q ss_pred CCCCcchhhhhhhhhhhcCCCCCCCchhhhhhhcccceeeeeeecCCCccccCCCCCCCCCccccccc----ccCC---C
Q 008166 2 GASDPVVERETQNKEEEEGGGEGGGEEEVKDVEKGEVVVEEKVVDSNSNVNINNINGEQRGFNASMMQ----TLNP---T 74 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~ 74 (575)
++++|-.+|..+-+|..-.--++++++-++-.+.++-.++.| +|+--.+-+-+ +.-..-++ .--| .
T Consensus 238 ~k~e~q~~~~s~~~~~~~~~~~e~~~~~~~k~~~a~~~i~~k-~~~~~~~fkqk------e~~~~~~~~s~~~~~P~~~~ 310 (484)
T KOG3655|consen 238 LKAEPQPRRWSEQNEIFGRNRDEEEETHMKKSEEAAAIISQK-VDSPREFFKQK------ERVLSASAGSCDVESPFNHR 310 (484)
T ss_pred cccCcCCCCcchhcchhhcccCHHHHhHhhhhHHHHhHhhcc-CCCcccccchh------cccccccccCCCCCCcccCC
Q ss_pred CCceEEEeCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008166 75 NPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTP 132 (575)
Q Consensus 75 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (575)
-|.|.-.+ |...|- |+++.+|++++...-|+-+..|+..-..+-.-|+|||+|
T Consensus 311 ~~~r~~~~---~~~~P~--~~~~pt~p~~a~~~ep~aa~~~~~~~e~~~~~P~p~p~P 363 (484)
T KOG3655|consen 311 PGPRLRSH---RRNAPT--PISTPTPPDTATEAEPVAAAIPRTLAEVPSSQPAPPPPP 363 (484)
T ss_pred CCcccccc---cccCCC--CCCCCCCCcccccCCCcccCCCccccCCcccCCCCCCCc
No 145
>PF05756 S-antigen: S-antigen protein; InterPro: IPR008825 S-antigens are heat stable proteins that are found in the blood of individuals infected with malaria [].
Probab=22.16 E-value=47 Score=28.05 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=4.5
Q ss_pred hhhhcCCCCCC
Q 008166 15 KEEEEGGGEGG 25 (575)
Q Consensus 15 ~~~~~~~~~~~ 25 (575)
+.|+|+|+|++
T Consensus 63 e~egenddeed 73 (94)
T PF05756_consen 63 EKEGENDDEED 73 (94)
T ss_pred hccCCCccccc
Confidence 33344444433
No 146
>PF12526 DUF3729: Protein of unknown function (DUF3729) ; InterPro: IPR022202 This domain of unknown function is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with PF01443 from PFAM, PF01661 from PFAM, PF05417 from PFAM, PF01660 from PFAM, PF00978 from PFAM. There is a single completely conserved residue L that may be functionally important.
Probab=21.97 E-value=2.1e+02 Score=26.03 Aligned_cols=11 Identities=27% Similarity=0.715 Sum_probs=4.5
Q ss_pred CCCCCCCCCCC
Q 008166 121 ISTSPPAPTPT 131 (575)
Q Consensus 121 ~~~~~~~~~~~ 131 (575)
.+++++.+.++
T Consensus 88 ~~P~pPvr~pp 98 (113)
T PF12526_consen 88 TTPPPPVRKPP 98 (113)
T ss_pred CCCCCCCCCCC
Confidence 34444444333
No 147
>PF15345 TMEM51: Transmembrane protein 51
Probab=21.84 E-value=1.5e+02 Score=30.25 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=6.1
Q ss_pred CCCCCCCCCCCCC
Q 008166 94 TPPPSQPSRQAPR 106 (575)
Q Consensus 94 ~~~~~~~~~~~~~ 106 (575)
|++.+.|.|+.+|
T Consensus 174 p~~g~~p~R~~Sr 186 (233)
T PF15345_consen 174 PSTGSPPNRSNSR 186 (233)
T ss_pred CCCCCCcccccCh
Confidence 3344445555554
No 148
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=21.39 E-value=27 Score=30.72 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=10.5
Q ss_pred hhhhhhhhcCCCCCCCchh
Q 008166 11 ETQNKEEEEGGGEGGGEEE 29 (575)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~ 29 (575)
|.+++|+++++-|-|.+||
T Consensus 51 ER~K~E~~~q~r~rES~~E 69 (121)
T PF10669_consen 51 ERSKKEEKRQKRNRESKRE 69 (121)
T ss_pred HHHHHHHHHHHHhhhhHHH
Confidence 5566666665555444433
No 149
>PHA03132 thymidine kinase; Provisional
Probab=20.86 E-value=2.6e+02 Score=32.41 Aligned_cols=12 Identities=17% Similarity=0.019 Sum_probs=4.9
Q ss_pred HHhchhhHhHHH
Q 008166 428 FRCGNGWAYVQI 439 (575)
Q Consensus 428 l~y~N~~Ayi~i 439 (575)
++||..---+.+
T Consensus 452 lqyf~~e~~v~~ 463 (580)
T PHA03132 452 LQYFTPEDIVQV 463 (580)
T ss_pred hcCCChHHHHHH
Confidence 344444443333
No 150
>PTZ00163 hypothetical protein; Provisional
Probab=20.80 E-value=40 Score=32.19 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=8.3
Q ss_pred CCCCcchhhhhhhh
Q 008166 2 GASDPVVERETQNK 15 (575)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (575)
|.+.|.. ||..+.
T Consensus 67 gnknpq~-r~~k~e 79 (230)
T PTZ00163 67 GNKNPQK-RERKNE 79 (230)
T ss_pred CCCChhh-ccccch
Confidence 6677777 776443
No 151
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=20.57 E-value=2.3e+02 Score=33.22 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=5.8
Q ss_pred ccCCCCCceEEE
Q 008166 70 TLNPTNPLRIVI 81 (575)
Q Consensus 70 ~~~~~~p~~~~~ 81 (575)
+..|+.|-...+
T Consensus 391 ~~gpp~p~~amm 402 (948)
T KOG0577|consen 391 EEGPPAPEMAMM 402 (948)
T ss_pred hcCCCCchhhhh
Confidence 345555554443
No 152
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=20.30 E-value=50 Score=36.56 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=22.6
Q ss_pred hhhhhhhhhcCCCCCCCchhhhhhhcccceeeee
Q 008166 10 RETQNKEEEEGGGEGGGEEEVKDVEKGEVVVEEK 43 (575)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (575)
|-.++-|.++.+-+--||+|+.|||+.+|.-||.
T Consensus 509 ~Gl~~lEK~~~~~DATdE~D~~~V~D~~G~~EE~ 542 (564)
T KOG1174|consen 509 RGLRLLEKSDDESDATDESDQQSVNDLTGLCEET 542 (564)
T ss_pred HHHHHHHhccCCCCccccccccchhhccCcchhh
Confidence 3445556666666667777777888887755553
No 153
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=20.25 E-value=85 Score=39.01 Aligned_cols=17 Identities=6% Similarity=0.221 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhhhh
Q 008166 275 IGFCCKVLIISLQPVSK 291 (575)
Q Consensus 275 I~~ai~iLk~As~~i~~ 291 (575)
+.++-++++.+.+--+.
T Consensus 2115 LhY~hSLlRlanDEakD 2131 (3015)
T KOG0943|consen 2115 LHYAHSLLRLANDEAKD 2131 (3015)
T ss_pred HHHHHHHHHhccccccc
Confidence 66677777766654433
No 154
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=20.21 E-value=1.6e+02 Score=34.56 Aligned_cols=53 Identities=17% Similarity=0.337 Sum_probs=0.0
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 008166 84 GRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQQAS 136 (575)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (575)
+++..+.+.+|-+.......++-+++|.|.+++..+++++.||.+++.+++..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (656)
T PRK06975 267 DAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARR 319 (656)
T ss_pred hcccCCcccCCCCCCCCCCCcccCCCCCCCCCCcCCCCCCCCCCCCcCCcccc
No 155
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=20.17 E-value=1.4e+02 Score=35.47 Aligned_cols=6 Identities=17% Similarity=0.063 Sum_probs=3.0
Q ss_pred cCCCCC
Q 008166 71 LNPTNP 76 (575)
Q Consensus 71 ~~~~~p 76 (575)
..++|+
T Consensus 250 ~~~~~~ 255 (911)
T PF05086_consen 250 SKRPNK 255 (911)
T ss_pred CCCCCC
Confidence 345555
No 156
>PF13388 DUF4106: Protein of unknown function (DUF4106)
Probab=20.15 E-value=2e+02 Score=30.35 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=4.9
Q ss_pred CCCCCCCCCCCc
Q 008166 122 STSPPAPTPTPQ 133 (575)
Q Consensus 122 ~~~~~~~~~~~~ 133 (575)
.+||-.+-|.+|
T Consensus 237 nQQpTvQNpaQQ 248 (422)
T PF13388_consen 237 NQQPTVQNPAQQ 248 (422)
T ss_pred ccCCCCCCcccC
Confidence 344444433333
No 157
>PHA03291 envelope glycoprotein I; Provisional
Probab=20.09 E-value=2.3e+02 Score=30.65 Aligned_cols=61 Identities=18% Similarity=0.291 Sum_probs=0.0
Q ss_pred CCCCceEEEeCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 008166 73 PTNPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQQASRT 138 (575)
Q Consensus 73 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (575)
++||-+|-+-++.| |+ +--...|-.+++++.+-+|++...|.+.+.-|++++++.+.++..
T Consensus 196 rl~~~~v~~P~~~~---p~--~~t~~~p~~t~~p~~~~~p~~tt~p~~~~~~~~~~~~~~~~~~~t 256 (401)
T PHA03291 196 RLGPADVFVPATPR---PT--PRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGT 256 (401)
T ss_pred ccCccceeccCCCC---CC--cccCCCCcccCCCCCCCCCCCCCCCCCcCCCCCCCCCCccCCCCC
Done!