Query 008166
Match_columns 575
No_of_seqs 211 out of 651
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 19:43:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 64.7 1.6 5.4E-05 39.5 0.5 12 121-132 126-137 (138)
2 2iu1_A EIF5, eukaryotic transl 59.1 2.6 8.9E-05 40.7 0.9 7 48-54 192-198 (208)
3 1uff_A Intersectin 2; beta bar 56.8 12 0.00039 30.8 4.4 7 32-38 23-29 (93)
4 2dvj_A V-CRK sarcoma virus CT1 51.0 17 0.00058 35.0 5.2 18 57-74 178-195 (230)
5 2i68_A Protein EMRE; transmemb 50.9 3.3 0.00011 37.3 0.0 13 46-58 125-137 (137)
6 2h8h_A Proto-oncogene tyrosine 49.8 3.5 0.00012 44.7 0.0 38 524-564 490-527 (535)
7 1pk8_A RAT synapsin I; ATP bin 48.9 3.6 0.00012 43.8 0.0 8 45-52 10-17 (422)
8 2grx_C Protein TONB; beta barr 44.8 4.6 0.00016 39.6 0.0 11 72-82 30-40 (229)
9 2h8h_A Proto-oncogene tyrosine 33.2 9.7 0.00033 41.1 0.3 10 551-560 493-502 (535)
10 3icg_A Endoglucanase D; cellul 28.4 13 0.00043 40.3 0.1 23 127-149 374-397 (515)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=64.73 E-value=1.6 Score=39.50 Aligned_cols=12 Identities=33% Similarity=0.880 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC
Q 008166 121 ISTSPPAPTPTP 132 (575)
Q Consensus 121 ~~~~~~~~~~~~ 132 (575)
.+++|.||||.|
T Consensus 126 ~~~~~~~~~~~~ 137 (138)
T 1jer_A 126 VMPPPVMPPPSP 137 (138)
T ss_dssp ------------
T ss_pred CCCCCCCCCCCC
Confidence 344555665543
No 2
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=59.11 E-value=2.6 Score=40.69 Aligned_cols=7 Identities=14% Similarity=0.781 Sum_probs=0.0
Q ss_pred CCccccC
Q 008166 48 NSNVNIN 54 (575)
Q Consensus 48 ~~~~~~~ 54 (575)
...++|+
T Consensus 192 ~~d~di~ 198 (208)
T 2iu1_A 192 DDDIDID 198 (208)
T ss_dssp -------
T ss_pred cccccHH
Confidence 3445565
No 3
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=56.84 E-value=12 Score=30.80 Aligned_cols=7 Identities=14% Similarity=0.667 Sum_probs=3.8
Q ss_pred hhhcccc
Q 008166 32 DVEKGEV 38 (575)
Q Consensus 32 ~~~~~~~ 38 (575)
..++|+.
T Consensus 23 sf~~Gd~ 29 (93)
T 1uff_A 23 SFNSGDI 29 (93)
T ss_dssp CBCTTCE
T ss_pred CCCCCCE
Confidence 4556653
No 4
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A
Probab=50.96 E-value=17 Score=34.95 Aligned_cols=18 Identities=11% Similarity=0.335 Sum_probs=7.9
Q ss_pred CCCCCCcccccccccCCC
Q 008166 57 NGEQRGFNASMMQTLNPT 74 (575)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~ 74 (575)
+|+..=+...-++..++.
T Consensus 178 ~g~~G~~P~~yv~~~~~~ 195 (230)
T 2dvj_A 178 EGKRGMIPVPYVEKYRPA 195 (230)
T ss_dssp TSCEEEEEGGGSCCCCSS
T ss_pred CCCEEEEehHHeEEcCCC
Confidence 343333444455544443
No 5
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=50.85 E-value=3.3 Score=37.28 Aligned_cols=13 Identities=31% Similarity=0.302 Sum_probs=0.0
Q ss_pred cCCCccccCCCCC
Q 008166 46 DSNSNVNINNING 58 (575)
Q Consensus 46 ~~~~~~~~~~~~~ 58 (575)
|-||.|+|+|+||
T Consensus 125 ~~~~~~~~~~~~~ 137 (137)
T 2i68_A 125 DLNSAVDHHHHHH 137 (137)
T ss_dssp -------------
T ss_pred HhhhhhhccccCC
Confidence 5678887766553
No 6
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=49.75 E-value=3.5 Score=44.71 Aligned_cols=38 Identities=13% Similarity=0.307 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcccCCCCcccccchhHHHHHHhcCCCCCC
Q 008166 524 PQACVSCYYVCYAQNPDNRLFDSTIKDRLSLMKAGRDVVVP 564 (575)
Q Consensus 524 ~~~~VdTifvCfaeDpe~~~~~~~~p~~~~~l~~~~~~~~p 564 (575)
-....|-+--|+..||+. ..+.-++.+.|+......-|
T Consensus 490 ~~~l~~li~~cl~~dP~~---RPt~~~l~~~L~~~~~~~~~ 527 (535)
T 2h8h_A 490 PESLHDLMCQCWRKEPEE---RPTFEYLQAFLEDYFTSTEP 527 (535)
T ss_dssp CHHHHHHHHHHTCSSGGG---SCCHHHHHHHHHTSSCCCSC
T ss_pred CHHHHHHHHHHcCCChhH---CcCHHHHHHHHHHHhhccCc
Confidence 345667788899999995 34666777888777544333
No 7
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=48.89 E-value=3.6 Score=43.84 Aligned_cols=8 Identities=50% Similarity=0.360 Sum_probs=0.0
Q ss_pred ecCCCccc
Q 008166 45 VDSNSNVN 52 (575)
Q Consensus 45 ~~~~~~~~ 52 (575)
-|||-.-|
T Consensus 10 sd~~~~~~ 17 (422)
T 1pk8_A 10 SDSNFMAN 17 (422)
T ss_dssp --------
T ss_pred ccchhhhc
Confidence 34444433
No 8
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Probab=44.85 E-value=4.6 Score=39.56 Aligned_cols=11 Identities=18% Similarity=0.673 Sum_probs=0.0
Q ss_pred CCCCCceEEEe
Q 008166 72 NPTNPLRIVIN 82 (575)
Q Consensus 72 ~~~~p~~~~~~ 82 (575)
.+.+|..|++-
T Consensus 30 ~~~~pi~v~mv 40 (229)
T 2grx_C 30 APAQPISVTMV 40 (229)
T ss_dssp -----------
T ss_pred CCCCCeEEEEe
Confidence 45568888874
No 9
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=33.20 E-value=9.7 Score=41.13 Aligned_cols=10 Identities=20% Similarity=-0.070 Sum_probs=4.4
Q ss_pred HHHHHHhcCC
Q 008166 551 RLSLMKAGRD 560 (575)
Q Consensus 551 ~~~~l~~~~~ 560 (575)
+.+-++..++
T Consensus 493 l~~li~~cl~ 502 (535)
T 2h8h_A 493 LHDLMCQCWR 502 (535)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHcC
Confidence 4444444433
No 10
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans}
Probab=28.37 E-value=13 Score=40.31 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=9.0
Q ss_pred CCCCCCccccccccc-Ccccccch
Q 008166 127 APTPTPQQASRTALN-SKKYTNKI 149 (575)
Q Consensus 127 ~~~~~~~~~~~~~~~-s~~~~d~~ 149 (575)
+||||++..+-..|. +..|.+.+
T Consensus 374 ~p~~p~~~~~~~~~~~~~~W~~g~ 397 (515)
T 3icg_A 374 TTPTTPQSAVEVTYAITNSWGSGA 397 (515)
T ss_dssp -------CCEEEEEEEEEECSSEE
T ss_pred CCCCCCCCceEEEEEEecCCCCcc
Confidence 344445555555664 45666653
Done!