Query 008166
Match_columns 575
No_of_seqs 211 out of 651
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 19:43:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008166.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008166hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uffa_ b.34.2.1 (A:) Intersec 24.1 39 0.0028 25.5 4.4 41 31-72 22-63 (93)
2 d1qvca_ b.40.4.3 (A:) ssDNA-bi 15.2 54 0.004 26.9 3.6 23 32-54 70-92 (145)
3 d1g9la_ a.144.1.1 (A:) poly(A) 8.5 2.5E+02 0.018 23.1 5.6 10 273-282 113-122 (144)
4 d1rw1a_ c.47.1.12 (A:) Hypothe 7.7 72 0.0052 24.9 1.6 26 440-465 3-28 (114)
5 d1pq4a_ c.92.2.2 (A:) Periplas 7.5 50 0.0037 30.2 0.6 11 66-76 150-160 (289)
6 d1z3ea1 c.47.1.12 (A:1-114) Re 7.4 53 0.0039 25.8 0.6 26 439-464 2-27 (114)
7 d1vpua_ g.34.1.1 (A:) HIV-1 VP 7.3 24 0.0017 23.8 -1.3 32 5-36 4-35 (45)
8 d2fcra_ c.23.5.1 (A:) Flavodox 6.1 1.2E+02 0.0084 25.5 2.2 24 442-465 98-121 (173)
9 d1j9ba_ c.47.1.12 (A:) Arsenat 6.0 1.3E+02 0.0093 24.4 2.4 28 441-468 4-31 (138)
10 d1g9la_ a.144.1.1 (A:) poly(A) 6.0 4.4E+02 0.032 21.4 6.0 46 83-128 6-52 (144)
No 1
>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.09 E-value=39 Score=25.45 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=18.6
Q ss_pred hhhhcccce-eeeeeecCCCccccCCCCCCCCCcccccccccC
Q 008166 31 KDVEKGEVV-VEEKVVDSNSNVNINNINGEQRGFNASMMQTLN 72 (575)
Q Consensus 31 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (575)
=..++||.+ |.|+.. .+.+.-.+..+|+..=+...-||.+.
T Consensus 22 Ls~~~Gd~v~Vl~~~~-~~~~w~~~~~~g~~G~~P~~Yve~~~ 63 (93)
T d1uffa_ 22 MSFNSGDIIQVDEKTV-GEPGWLYGSFQGNFGWFPCNYVEKMP 63 (93)
T ss_dssp CCBCTTCEEEECSSCC-CSSSEEEEEETTEEEEEETTTEEECC
T ss_pred ccCcCCCEEEEEEecc-CCCCEEEEEeCCcEEEEchHHEEECC
Confidence 355667633 222221 12233334445555555555565554
No 2
>d1qvca_ b.40.4.3 (A:) ssDNA-binding protein {Escherichia coli [TaxId: 562]}
Probab=15.22 E-value=54 Score=26.89 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=12.0
Q ss_pred hhhcccceeeeeeecCCCccccC
Q 008166 32 DVEKGEVVVEEKVVDSNSNVNIN 54 (575)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~ 54 (575)
.+.||..|.-|--+..++-.+.+
T Consensus 70 ~l~KG~~V~V~G~l~~~~~~~kd 92 (145)
T d1qvca_ 70 YLRKGSQVYIEGQLRTRKWTDQS 92 (145)
T ss_dssp HCCTTCEEEEEEEEEEEEECSSS
T ss_pred hcccCCEEEEEEEEEEeeeECCC
Confidence 45688655555444444443333
No 3
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.48 E-value=2.5e+02 Score=23.12 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=3.7
Q ss_pred hhHHHHHHHH
Q 008166 273 QRIGFCCKVL 282 (575)
Q Consensus 273 ~RI~~ai~iL 282 (575)
.||.-|.++|
T Consensus 113 ~kV~EA~~vL 122 (144)
T d1g9la_ 113 SKVDEAVAVL 122 (144)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 4
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=7.67 E-value=72 Score=24.89 Aligned_cols=26 Identities=8% Similarity=0.143 Sum_probs=23.1
Q ss_pred hhcCCchhHhHHHHHHHHHhcCCcce
Q 008166 440 AAYGKGFVQASQDTWALFERQEMEPI 465 (575)
Q Consensus 440 AI~G~~F~~SAk~a~~L~~~n~~~al 465 (575)
-+||.+=|.++|+|.++++.++...-
T Consensus 3 ~iY~~p~Cs~srka~~~L~~~~i~~~ 28 (114)
T d1rw1a_ 3 VLYGIKACDTMKKARTWLDEHKVAYD 28 (114)
T ss_dssp EEEECSSCHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCChHHHHHHHHHHHcCCCeE
Confidence 37999999999999999999998753
No 5
>d1pq4a_ c.92.2.2 (A:) Periplasmic zinc binding protein ZnuA {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=7.53 E-value=50 Score=30.16 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=5.8
Q ss_pred ccccccCCCCC
Q 008166 66 SMMQTLNPTNP 76 (575)
Q Consensus 66 ~~~~~~~~~~p 76 (575)
..|+.++|-|-
T Consensus 150 ~~L~~~dP~~~ 160 (289)
T d1pq4a_ 150 KELAELDPDNR 160 (289)
T ss_dssp HHHHHHCGGGH
T ss_pred HHHHHhhhhhh
Confidence 34555555544
No 6
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=7.39 E-value=53 Score=25.80 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=23.1
Q ss_pred HhhcCCchhHhHHHHHHHHHhcCCcc
Q 008166 439 IAAYGKGFVQASQDTWALFERQEMEP 464 (575)
Q Consensus 439 iAI~G~~F~~SAk~a~~L~~~n~~~a 464 (575)
+-+||.+=|.++|+|.+.++.++...
T Consensus 2 i~ly~~~~C~~~rka~~~L~~~~i~~ 27 (114)
T d1z3ea1 2 VTLYTSPSCTSCRKARAWLEEHEIPF 27 (114)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCE
T ss_pred EEEEcCCCCHHHHHHHHHHHHCCCCe
Confidence 34799999999999999999999874
No 7
>d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=7.31 E-value=24 Score=23.84 Aligned_cols=32 Identities=34% Similarity=0.499 Sum_probs=0.0
Q ss_pred CcchhhhhhhhhhhcCCCCCCCchhhhhhhcc
Q 008166 5 DPVVERETQNKEEEEGGGEGGGEEEVKDVEKG 36 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (575)
|--++|=.||.|..-|+.|||-||=..=||-|
T Consensus 4 drLi~RIrERAEDSGNESeGD~eELs~lvemg 35 (45)
T d1vpua_ 4 DRLIDRITERAEDSGNESEGDQEELSALVERG 35 (45)
T ss_dssp HHHHHHHHHTTCHHHHTTTTHHHHTCSSCCGG
T ss_pred HHHHHHHHHHcccCCCCCcccHHHHHHHHhcc
No 8
>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]}
Probab=6.08 E-value=1.2e+02 Score=25.55 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=0.0
Q ss_pred cCCchhHhHHHHHHHHHhcCCcce
Q 008166 442 YGKGFVQASQDTWALFERQEMEPI 465 (575)
Q Consensus 442 ~G~~F~~SAk~a~~L~~~n~~~al 465 (575)
|+..||.|++...+.++++|...+
T Consensus 98 y~~~F~~a~~~l~~~l~~~GA~~I 121 (173)
T d2fcra_ 98 YPDNFCDAIEEIHDCFAKQGAKPV 121 (173)
T ss_dssp CTTSTTTHHHHHHHHHHHTTCEEE
T ss_pred chhhHHHHHHHHHHHHHhCCCEEe
No 9
>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}
Probab=6.00 E-value=1.3e+02 Score=24.35 Aligned_cols=28 Identities=18% Similarity=0.250 Sum_probs=0.0
Q ss_pred hcCCchhHhHHHHHHHHHhcCCcceehh
Q 008166 441 AYGKGFVQASQDTWALFERQEMEPIVDS 468 (575)
Q Consensus 441 I~G~~F~~SAk~a~~L~~~n~~~alv~d 468 (575)
+|+.+=|..+|+|.++++.++...-+.+
T Consensus 4 iY~~p~Cs~srkal~~L~~~~i~~~~id 31 (138)
T d1j9ba_ 4 IYHNPACGTSRNTLEMIRNSGTEPTIIL 31 (138)
T ss_dssp EECCTTCHHHHHHHHHHHHTTCCCEEEC
T ss_pred EEECCCCHHHHHHHHHHHHCCCCeEEEe
No 10
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.99 E-value=4.4e+02 Score=21.44 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=0.0
Q ss_pred CcccccCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008166 83 GGRRVTAPRIATP-PPSQPSRQAPRIATPPPSQPSRPRSISTSPPAP 128 (575)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (575)
++.+...++..|+ +-.+.-|.|.+++..+|+.....+...-+++.|
T Consensus 6 ~~~~~p~~~~~P~~ky~~~~rnp~~~~~~~p~~~~~~p~~~~~~q~p 52 (144)
T d1g9la_ 6 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEP 52 (144)
T ss_dssp CCCCCSCCSSCCCCCCCCTTSCCCCCCCCCSCCCCSSCSCCCCSCCC
T ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Done!