Your job contains 1 sequence.
>008167
MPMPAGSGSVAHALFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVR
VIGEIGDRDTESEMVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVF
SVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERR
IDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQAR
MDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQI
REANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVS
SSKALADSLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHF
TSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELH
TLIYFRKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIV
KMDGNLSYSVLQTVNIHMEVVEPQPNRPKLQLTLI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008167
(575 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
MGI|MGI:1919912 - symbol:Dis3 "DIS3 mitotic control homol... 1461 1.1e-149 1
UNIPROTKB|E2RNY6 - symbol:DIS3 "Uncharacterized protein" ... 1458 2.3e-149 1
ZFIN|ZDB-GENE-080213-3 - symbol:dis3 "DIS3 mitotic contro... 1439 3.2e-149 2
UNIPROTKB|G3V1J5 - symbol:DIS3 "Exosome complex exonuclea... 1456 3.8e-149 1
UNIPROTKB|Q9Y2L1 - symbol:DIS3 "Exosome complex exonuclea... 1456 3.8e-149 1
UNIPROTKB|E1BXX6 - symbol:DIS3 "Uncharacterized protein" ... 1445 5.5e-148 1
UNIPROTKB|F1RHF7 - symbol:DIS3 "Uncharacterized protein" ... 1445 5.5e-148 1
FB|FBgn0039183 - symbol:Dis3 "Dis3" species:7227 "Drosoph... 1388 6.1e-142 1
DICTYBASE|DDB_G0293614 - symbol:DDB_G0293614 "putative ex... 1380 4.3e-141 1
WB|WBGene00001001 - symbol:dis-3 species:6239 "Caenorhabd... 1379 5.5e-141 1
POMBASE|SPBC26H8.10 - symbol:dis3 "3'-5' exoribonuclease ... 1352 4.0e-138 1
UNIPROTKB|G4NDV8 - symbol:MGG_00193 "Mitotic control prot... 1316 2.6e-134 1
CGD|CAL0003527 - symbol:orf19.5229 species:5476 "Candida ... 1309 1.4e-133 1
UNIPROTKB|F1N1R4 - symbol:DIS3 "Uncharacterized protein" ... 1306 3.0e-133 1
SGD|S000005381 - symbol:DIS3 "Exosome core complex cataly... 1266 5.2e-129 1
ASPGD|ASPL0000011287 - symbol:AN3657 species:162425 "Emer... 1217 8.0e-124 1
ZFIN|ZDB-GENE-070209-95 - symbol:dis3l "DIS3 mitotic cont... 526 6.9e-100 2
UNIPROTKB|Q5R5N8 - symbol:DIS3L "DIS3-like exonuclease 1"... 527 1.1e-99 2
UNIPROTKB|Q0P4R5 - symbol:dis3l "DIS3-like exonuclease 1"... 533 7.5e-98 2
UNIPROTKB|Q8TF46 - symbol:DIS3L "DIS3-like exonuclease 1"... 528 8.6e-98 2
UNIPROTKB|Q6GN11 - symbol:dis3l "DIS3-like exonuclease 1"... 510 3.1e-97 2
UNIPROTKB|F1SJJ9 - symbol:DIS3L "Uncharacterized protein"... 513 7.8e-96 2
UNIPROTKB|I3LEH1 - symbol:DIS3L "Uncharacterized protein"... 513 1.3e-95 2
DICTYBASE|DDB_G0278757 - symbol:DDB_G0278757 "DIS3-like e... 493 2.8e-91 2
DICTYBASE|DDB_G0268186 - symbol:DDB_G0268186 species:4468... 499 1.6e-89 2
GENEDB_PFALCIPARUM|MAL13P1.289 - symbol:MAL13P1.289 "mito... 877 8.6e-88 1
UNIPROTKB|Q8IDB6 - symbol:MAL13P1.289 "Mitotic control pr... 877 8.6e-88 1
POMBASE|SPAC2C4.07c - symbol:SPAC2C4.07c "ribonuclease II... 833 3.9e-83 1
ZFIN|ZDB-GENE-070705-171 - symbol:si:ch211-273k1.4 "si:ch... 707 9.6e-70 1
UNIPROTKB|Q8IYB7 - symbol:DIS3L2 "DIS3-like exonuclease 2... 695 1.7e-68 1
UNIPROTKB|E2QZ40 - symbol:DIS3L2 "Uncharacterized protein... 694 2.1e-68 1
UNIPROTKB|F6XKS7 - symbol:DIS3L2 "Uncharacterized protein... 694 2.1e-68 1
RGD|1560168 - symbol:Dis3l2 "DIS3 mitotic control homolog... 692 3.5e-68 1
UNIPROTKB|E1B7R0 - symbol:DIS3L2 "Uncharacterized protein... 691 4.4e-68 1
MGI|MGI:2442555 - symbol:Dis3l2 "DIS3 mitotic control hom... 691 4.4e-68 1
UNIPROTKB|E1C372 - symbol:DIS3L2 "Uncharacterized protein... 663 4.1e-65 1
ASPGD|ASPL0000054659 - symbol:AN1158 species:162425 "Emer... 648 2.4e-62 1
TAIR|locus:2203231 - symbol:AT1G77680 species:3702 "Arabi... 586 7.5e-60 2
FB|FBgn0035111 - symbol:CG16940 species:7227 "Drosophila ... 612 6.7e-59 1
RGD|1304646 - symbol:Dis3 "DIS3 mitotic control homolog (... 600 1.9e-58 1
UNIPROTKB|F2Z2C0 - symbol:DIS3 "Exosome complex exonuclea... 592 1.4e-57 1
UNIPROTKB|H7C440 - symbol:DIS3L2 "DIS3-like exonuclease 2... 573 1.4e-55 1
TIGR_CMR|BA_5334 - symbol:BA_5334 "ribonuclease R" specie... 573 1.4e-55 1
TIGR_CMR|CHY_0289 - symbol:CHY_0289 "ribonuclease R" spec... 572 1.8e-55 1
TIGR_CMR|GSU_1485 - symbol:GSU_1485 "ribonuclease R, puta... 550 3.8e-53 1
WB|WBGene00018612 - symbol:F48E8.6 species:6239 "Caenorha... 550 1.2e-52 1
UNIPROTKB|A0JN80 - symbol:DIS3L "DIS3-like exonuclease 1"... 529 5.3e-51 2
UNIPROTKB|F1MEA6 - symbol:DIS3L "DIS3-like exonuclease 1"... 529 5.3e-51 2
UNIPROTKB|F1NKN5 - symbol:LOC100857630 "Uncharacterized p... 533 2.6e-50 1
RGD|1308959 - symbol:Dis3l "DIS3 mitotic control homolog ... 525 1.8e-49 1
MGI|MGI:2143272 - symbol:Dis3l "DIS3 mitotic control homo... 524 2.2e-49 1
CGD|CAL0003016 - symbol:SSD1 species:5476 "Candida albica... 526 2.3e-49 1
UNIPROTKB|Q5AK62 - symbol:SSD1 "Putative uncharacterized ... 526 2.3e-49 1
TIGR_CMR|SPO_3330 - symbol:SPO_3330 "ribonuclease R" spec... 499 2.2e-47 1
TIGR_CMR|CBU_1091 - symbol:CBU_1091 "ribonuclease R" spec... 495 6.1e-47 1
UNIPROTKB|F1PK78 - symbol:DIS3L "Uncharacterized protein"... 498 1.3e-46 1
TIGR_CMR|CPS_4617 - symbol:CPS_4617 "ribonuclease R" spec... 477 1.1e-44 1
SGD|S000002701 - symbol:SSD1 "Translational repressor wit... 460 2.5e-42 1
UNIPROTKB|P21499 - symbol:rnr species:83333 "Escherichia ... 455 2.6e-42 1
TIGR_CMR|SO_3935 - symbol:SO_3935 "ribonuclease R" specie... 436 3.0e-40 1
UNIPROTKB|Q9KNY1 - symbol:rnr "Ribonuclease R" species:24... 432 8.7e-40 1
TIGR_CMR|VC_2599 - symbol:VC_2599 "ribonuclease R" specie... 432 8.7e-40 1
UNIPROTKB|I3LLL5 - symbol:I3LLL5 "Uncharacterized protein... 406 7.0e-38 1
POMBASE|SPBC609.01 - symbol:SPBC609.01 "ribonuclease II (... 370 6.6e-31 1
UNIPROTKB|Q5HVE0 - symbol:CJE0734 "RNB-like protein" spec... 330 5.9e-27 1
TIGR_CMR|CJE_0734 - symbol:CJE_0734 "RNB-like protein" sp... 330 5.9e-27 1
POMBASE|SPCC16C4.09 - symbol:sts5 "RNB-like protein" spec... 284 6.0e-26 2
UNIPROTKB|P30850 - symbol:rnb "ribonuclease II" species:8... 295 5.2e-23 1
UNIPROTKB|Q9KLE1 - symbol:rnb "Exoribonuclease 2" species... 284 9.9e-22 1
TIGR_CMR|VC_A0805 - symbol:VC_A0805 "exoribonuclease II" ... 284 9.9e-22 1
UNIPROTKB|E1C0Z0 - symbol:HELZ2 "Uncharacterized protein"... 240 4.9e-21 2
RGD|1306056 - symbol:Pric285 "peroxisomal proliferator-ac... 216 3.7e-20 2
DICTYBASE|DDB_G0285435 - symbol:DDB_G0285435 species:4468... 227 1.6e-19 3
UNIPROTKB|E2RBM4 - symbol:PRIC285 "Uncharacterized protei... 210 5.4e-19 2
TAIR|locus:2180172 - symbol:EMB2730 "EMBRYO DEFECTIVE 273... 224 1.1e-18 2
UNIPROTKB|Q9BYK8 - symbol:HELZ2 "Helicase with zinc finge... 202 5.2e-18 2
UNIPROTKB|F1RMM8 - symbol:LOC100519780 "Uncharacterized p... 208 2.7e-16 2
GENEDB_PFALCIPARUM|PFF0745c - symbol:PFF0745c "ribonuclea... 159 6.1e-16 2
DICTYBASE|DDB_G0288469 - symbol:DDB_G0288469 species:4468... 177 3.7e-14 2
ZFIN|ZDB-GENE-070912-617 - symbol:si:dkey-97a13.6 "si:dke... 207 4.9e-11 2
UNIPROTKB|I3LNA8 - symbol:I3LNA8 "Uncharacterized protein... 159 1.1e-10 1
ASPGD|ASPL0000038338 - symbol:AN9151 species:162425 "Emer... 136 3.5e-08 2
SGD|S000004900 - symbol:DSS1 "3'-5' exoribonuclease" spec... 103 1.7e-06 2
UNIPROTKB|G4MRS6 - symbol:MGG_13800 "Mitochondrial protei... 118 8.2e-06 2
CGD|CAL0000344 - symbol:orf19.3624 species:5476 "Candida ... 118 2.3e-05 2
POMBASE|SPCC1322.01 - symbol:rpm1 "3'-5' exonuclease for ... 130 2.8e-05 2
>MGI|MGI:1919912 [details] [associations]
symbol:Dis3 "DIS3 mitotic control homolog (S. cerevisiae)"
species:10090 "Mus musculus" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISO] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=ISO] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=ISO] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0005085 "guanyl-nucleotide exchange factor activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0071034 "CUT catabolic process" evidence=ISO]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 MGI:MGI:1919912
InterPro:IPR006596 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0003723 GO:GO:0005085 GO:GO:0004519 GO:GO:0016075
GO:GO:0006364 GO:GO:0000176 GO:GO:0000175 eggNOG:COG0557
HOGENOM:HOG000191945 HOVERGEN:HBG059397 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 KO:K12585 OMA:MPWSITE
SMART:SM00670 GO:GO:0071034 CTD:22894 OrthoDB:EOG45B1DT
EMBL:AK012840 EMBL:AK032091 EMBL:AK129259 IPI:IPI00407764
RefSeq:NP_082591.2 UniGene:Mm.163339 ProteinModelPortal:Q9CSH3
SMR:Q9CSH3 STRING:Q9CSH3 PhosphoSite:Q9CSH3 PaxDb:Q9CSH3
PRIDE:Q9CSH3 Ensembl:ENSMUST00000042471 GeneID:72662 KEGG:mmu:72662
UCSC:uc007uuw.1 InParanoid:Q9CSH3 NextBio:336687 Bgee:Q9CSH3
CleanEx:MM_DIS3 Genevestigator:Q9CSH3 Uniprot:Q9CSH3
Length = 958
Score = 1461 (519.4 bits), Expect = 1.1e-149, P = 1.1e-149
Identities = 288/564 (51%), Positives = 399/564 (70%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
LF P D+RIP+IRI+TRQ L +RIIVA+D W SRYP GH+V+ +G++G+++TE+E
Sbjct: 372 LFTPADKRIPRIRIETRQASALEGRRIIVAIDGWPRNSRYPNGHFVKNLGDVGEKETETE 431
Query: 74 MVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDA 133
++L+++D+ +PFS VL+ LP +PWS++ ED+ N R DLR L V SVDPPGC DIDDA
Sbjct: 432 VLLLEHDVPHQPFSQAVLSFLPRMPWSITEEDMKN--REDLRHLCVCSVDPPGCTDIDDA 489
Query: 134 LHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDIC 193
LHC LS+GN EVGVHIADV++F+ PG LD E+++RGT+VYL E+RIDM+P+ L+ ++C
Sbjct: 490 LHCRELSNGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLC 549
Query: 194 SLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTD 253
SLR++V+RLAFS IWE+ AEI+ TR+TKSVI S A+L+Y EAQ R+D + + D +TT
Sbjct: 550 SLRSNVDRLAFSCIWEMNHNAEILKTRFTKSVINSKASLTYAEAQMRIDSAAMNDDITTS 609
Query: 254 LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLA 313
LR +N LAK +++ RIE+GALTL+S E++F +D+ETHDP+D+ ++RE N MVEEFML
Sbjct: 610 LRGLNQLAKILKKGRIEKGALTLSSPEIRFHMDSETHDPIDLQTKELRETNSMVEEFMLL 669
Query: 314 ANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAV 373
AN+SVA++I +F +LLR+HP+P + L++ A + L + ++K+LADSLDRA
Sbjct: 670 ANISVAKKIHEEFSEHALLRKHPAPPPSNYDILVKAAKSKNLQIKTDTAKSLADSLDRAE 729
Query: 374 GDD-PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVV 432
D PY N L+RILATRCM QAVYFCSG +FHHYGLA+P+YTHFTSPIRRYAD++V
Sbjct: 730 SPDFPYLNTLLRILATRCMMQAVYFCSG--MDNDFHHYGLASPIYTHFTSPIRRYADIIV 787
Query: 433 HRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRP-TD 491
HRLL+ ++G D+ +L+ I NLN+RH+ AQ A R SV HT ++F+ +
Sbjct: 788 HRLLAVAIGADCTYPELTDKHKLSDICKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVS 847
Query: 492 TEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDE-QQQKI----------V 540
EA I+ +R N +V +PK+G+EG V+ + + Y DE +I V
Sbjct: 848 EEAYILFVRKNAIVVLIPKYGLEGTVFFEEKDKPKPRLAYDDEIPSLRIEGTVFHVFDKV 907
Query: 541 KMDGNLSYSVLQTVNIHMEVVEPQ 564
K+ L S LQ I M +VEPQ
Sbjct: 908 KVKITLDSSNLQHQKIRMALVEPQ 931
>UNIPROTKB|E2RNY6 [details] [associations]
symbol:DIS3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071034 "CUT catabolic process" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange
factor activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0005654 GO:GO:0003723 GO:GO:0005085 GO:GO:0004519
GO:GO:0016075 GO:GO:0000176 GO:GO:0000175 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 KO:K12585 OMA:MPWSITE
SMART:SM00670 GO:GO:0071034 CTD:22894 EMBL:AAEX03013240
RefSeq:XP_542610.3 Ensembl:ENSCAFT00000008080 GeneID:485491
KEGG:cfa:485491 NextBio:20859485 Uniprot:E2RNY6
Length = 958
Score = 1458 (518.3 bits), Expect = 2.3e-149, P = 2.3e-149
Identities = 289/564 (51%), Positives = 396/564 (70%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
LF P DRRIP+IRI+TRQ L +RIIVA+D W SRYP GH+V+ +GE+G+++TE+E
Sbjct: 372 LFTPADRRIPRIRIETRQASALEGRRIIVAIDGWPRNSRYPNGHFVKNLGEVGEKETETE 431
Query: 74 MVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDA 133
++L+++D+ +PFS VL+ LP +PWS++ +D+ N R DLR L V SVDPPGC DIDDA
Sbjct: 432 VLLLEHDVPHQPFSQAVLSFLPKMPWSITEKDMKN--REDLRHLCVCSVDPPGCTDIDDA 489
Query: 134 LHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDIC 193
LHC L +GN EVGVHIADV++F+ PG LD E+++RGT+VYL E+RIDM+P+ L+ ++C
Sbjct: 490 LHCRELENGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLC 549
Query: 194 SLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTD 253
SLR +V+RLAFS IWE+ +AEI+ R+TKSVI S A+L+Y EAQ R+D + + D +TT
Sbjct: 550 SLRCNVDRLAFSCIWEMNHDAEILKVRFTKSVINSKASLTYAEAQMRIDSAAMNDDITTS 609
Query: 254 LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLA 313
LR +N LAK +++RRIE+GALTL+S EV+F +D+ETHDP+D+ ++RE N MVEEFML
Sbjct: 610 LRGLNKLAKILKKRRIEKGALTLSSPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLL 669
Query: 314 ANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAV 373
AN+SVA++I +F +LLR+HP+P E L++ A + L + ++K+LADSLDRA
Sbjct: 670 ANISVAKKIHEEFSEHALLRKHPAPPPSNYEILVKAAKSKNLEIKTDTAKSLADSLDRAD 729
Query: 374 GDD-PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVV 432
PY N L+RILATRCM QAVYFCSG +FHHYGLA+P+YTHFTSPIRRYAD++V
Sbjct: 730 SPTFPYLNTLLRILATRCMMQAVYFCSG--MDNDFHHYGLASPIYTHFTSPIRRYADIIV 787
Query: 433 HRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRP-TD 491
HRLL+ ++G D+ +L + NLN+RH+ AQ A R SV HT ++F+ +
Sbjct: 788 HRLLAVAIGADCTYPELTDKHKLADLCKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVS 847
Query: 492 TEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQ-KI----------V 540
EA I+ +R N +V +PK+G+EG V+ + + Y DE KI V
Sbjct: 848 EEAYILFVRKNAIVVLIPKYGLEGTVFFEEKDKPKPKLIYDDEVPSLKIEDTVFHIFDKV 907
Query: 541 KMDGNLSYSVLQTVNIHMEVVEPQ 564
K+ L S LQ I M +VEPQ
Sbjct: 908 KVKIMLDSSNLQHQKIRMSLVEPQ 931
>ZFIN|ZDB-GENE-080213-3 [details] [associations]
symbol:dis3 "DIS3 mitotic control homolog (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
ZFIN:ZDB-GENE-080213-3 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
KO:K12585 SMART:SM00670 CTD:22894 EMBL:BX571717 IPI:IPI00803594
RefSeq:XP_001336850.2 UniGene:Dr.51536 ProteinModelPortal:E7FE01
Ensembl:ENSDART00000085454 GeneID:100003553 KEGG:dre:100003553
NextBio:20785882 Bgee:E7FE01 Uniprot:E7FE01
Length = 950
Score = 1439 (511.6 bits), Expect = 3.2e-149, Sum P(2) = 3.2e-149
Identities = 285/563 (50%), Positives = 395/563 (70%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
LF P DRRIP+IRI+TRQ L+ +RI+VA+D W SRYP GH+V+ +G GD++TE+E
Sbjct: 369 LFTPADRRIPRIRIETRQAATLIGQRIMVAIDGWPKNSRYPNGHFVKNLGTAGDKETETE 428
Query: 74 MVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDA 133
++L+++D+ +PFS VL+ LP +PW ++ EDL +R DLR L V SVDPPGC DIDDA
Sbjct: 429 VLLLEHDVPHQPFSQAVLSFLPKMPWGITEEDLK--VRADLRHLCVCSVDPPGCTDIDDA 486
Query: 134 LHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDIC 193
LHC L +GN EVGVHIADV++F+ PG LD EA+ RGT+VYL +RIDM+P+ L+ ++C
Sbjct: 487 LHCRELENGNLEVGVHIADVSHFIRPGNALDQEAANRGTTVYLCGKRIDMVPELLSSNLC 546
Query: 194 SLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTD 253
SLR++VERLAFS IWE+ +AEII T +TKSVI S A+L+Y EAQ R+DD+ + D +T
Sbjct: 547 SLRSNVERLAFSCIWEMNHKAEIIKTHFTKSVINSKASLTYAEAQMRIDDTTMNDDITKS 606
Query: 254 LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLA 313
LR +N LAK ++ +RI++GALTL+S EV+F ID+ETHDP+D+ ++ E N MVEEFML
Sbjct: 607 LRGLNKLAKILKAQRIDKGALTLSSPEVRFHIDSETHDPIDLQTKELMETNSMVEEFMLL 666
Query: 314 ANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAV 373
AN+SVA++I +F C+LLR+HP+P + L++ A + L + S+KALADSL+ A
Sbjct: 667 ANISVAQKIYDEFSECALLRKHPAPPPSNYDILIKAAKSRDLEIHTDSAKALADSLNNAT 726
Query: 374 GDD-PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVV 432
++ YFN L+RILATRCM QAVYFCSG +FHHYGLA+P+YTHFTSPIRRYAD++V
Sbjct: 727 IENFAYFNTLLRILATRCMMQAVYFCSG--MDSDFHHYGLASPIYTHFTSPIRRYADIIV 784
Query: 433 HRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPT-D 491
HRLL+ ++ D+ + +++ +N+NYRH+ AQ A R SV HT ++F+ + +
Sbjct: 785 HRLLAVAINADSTYPDLMDKHKQSALCNNINYRHKMAQYAQRASVAFHTQLFFKNKGIIN 844
Query: 492 TEARIVKIRSNGFIVFVPKFGIEGPVYL------TPR-GQKGSGDWY-VDEQQQKI---V 540
E I+ +R N I+ +PKFG+EG V+ +PR G V+E +I V
Sbjct: 845 EEGFILFVRKNAIIILIPKFGLEGTVFFENKDKPSPRLSFDTEGPTLKVEEHTFRIFDRV 904
Query: 541 KMDGNLSYSVLQTVNIHMEVVEP 563
K+ +L S LQ I M + EP
Sbjct: 905 KVTISLDASNLQHQRIRMALTEP 927
Score = 39 (18.8 bits), Expect = 3.2e-149, Sum P(2) = 3.2e-149
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 535 QQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPKL 570
Q Q+I +M L+ V+ V++ + EP+ +PKL
Sbjct: 916 QHQRI-RMA--LTEPVIPGVSVPIPESEPEAKKPKL 948
>UNIPROTKB|G3V1J5 [details] [associations]
symbol:DIS3 "Exosome complex exonuclease RRP44"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 GO:GO:0003723
GO:GO:0004540 EMBL:AL138695 InterPro:IPR022966 PROSITE:PS01175
EMBL:CH471093 EMBL:AL391384 UniGene:Hs.740506 HGNC:HGNC:20604
ChiTaRS:DIS3 ProteinModelPortal:G3V1J5 SMR:G3V1J5
Ensembl:ENST00000545453 ArrayExpress:G3V1J5 Bgee:G3V1J5
Uniprot:G3V1J5
Length = 796
Score = 1456 (517.6 bits), Expect = 3.8e-149, P = 3.8e-149
Identities = 287/564 (50%), Positives = 396/564 (70%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
LF P D+RIP+IRI+TRQ L +RIIVA+D W SRYP GH+VR +G++G+++TE+E
Sbjct: 210 LFTPADKRIPRIRIETRQASTLEGRRIIVAIDGWPRNSRYPNGHFVRNLGDVGEKETETE 269
Query: 74 MVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDA 133
++L+++D+ +PFS VL+ LP +PWS++ +D+ N R DLR L + SVDPPGC DIDDA
Sbjct: 270 VLLLEHDVPHQPFSQAVLSFLPKMPWSITEKDMKN--REDLRHLCICSVDPPGCTDIDDA 327
Query: 134 LHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDIC 193
LHC L +GN EVGVHIADV++F+ PG LD E+++RGT+VYL E+RIDM+P+ L+ ++C
Sbjct: 328 LHCRELENGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLC 387
Query: 194 SLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTD 253
SL+ DV+RLAFS IWE+ AEI+ T++TKSVI S A+L+Y EAQ R+D + + D +TT
Sbjct: 388 SLKCDVDRLAFSCIWEMNHNAEILKTKFTKSVINSKASLTYAEAQLRIDSANMNDDITTS 447
Query: 254 LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLA 313
LR +N LAK +++RRIE+GALTL+S EV+F +D+ETHDP+D+ ++RE N MVEEFML
Sbjct: 448 LRGLNKLAKILKKRRIEKGALTLSSPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLL 507
Query: 314 ANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAV 373
AN+SVA++I +F +LLR+HP+P E L++ A + L + ++K+LA+SLD+A
Sbjct: 508 ANISVAKKIHEEFSEHALLRKHPAPPPSNYEILVKAARSRNLEIKTDTAKSLAESLDQAE 567
Query: 374 GDD-PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVV 432
PY N L+RILATRCM QAVYFCSG +FHHYGLA+P+YTHFTSPIRRYADV+V
Sbjct: 568 SPTFPYLNTLLRILATRCMMQAVYFCSG--MDNDFHHYGLASPIYTHFTSPIRRYADVIV 625
Query: 433 HRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRP-TD 491
HRLL+ ++G D+ +L I NLN+RH+ AQ A R SV HT ++F+ +
Sbjct: 626 HRLLAVAIGADCTYPELTDKHKLADICKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVS 685
Query: 492 TEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDE-QQQKI----------V 540
EA I+ +R N +V +PK+G+EG V+ + + Y DE KI V
Sbjct: 686 EEAYILFVRKNAIVVLIPKYGLEGTVFFEEKDKPNPQLIYDDEIPSLKIEDTVFHVFDKV 745
Query: 541 KMDGNLSYSVLQTVNIHMEVVEPQ 564
K+ L S LQ I M +VEPQ
Sbjct: 746 KVKIMLDSSNLQHQKIRMSLVEPQ 769
>UNIPROTKB|Q9Y2L1 [details] [associations]
symbol:DIS3 "Exosome complex exonuclease RRP44"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005085 "guanyl-nucleotide exchange factor activity"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0000178 "exosome (RNase complex)" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IMP]
[GO:0004519 "endonuclease activity" evidence=IMP] [GO:0016075 "rRNA
catabolic process" evidence=IMP] [GO:0071034 "CUT catabolic
process" evidence=IMP] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
InterPro:IPR006596 GO:GO:0005829 GO:GO:0005654 GO:GO:0003723
GO:GO:0005085 GO:GO:0004519 GO:GO:0016075 GO:GO:0006364
EMBL:AL138695 GO:GO:0000176 GO:GO:0000175 GO:GO:0043928
eggNOG:COG0557 HOVERGEN:HBG059397 InterPro:IPR022966
PROSITE:PS01175 KO:K12585 OMA:MPWSITE SMART:SM00670 EMBL:CH471093
GO:GO:0071034 EMBL:AL391384 EMBL:AF330044 EMBL:AB023225
EMBL:AL832266 EMBL:AK314715 EMBL:AL080158 EMBL:BC056143
IPI:IPI00183462 IPI:IPI00746351 PIR:JE0110 RefSeq:NP_001121698.1
RefSeq:NP_055768.3 UniGene:Hs.740506 ProteinModelPortal:Q9Y2L1
SMR:Q9Y2L1 IntAct:Q9Y2L1 STRING:Q9Y2L1 PhosphoSite:Q9Y2L1
DMDM:73620993 SWISS-2DPAGE:Q9Y2L1 PaxDb:Q9Y2L1 PRIDE:Q9Y2L1
Ensembl:ENST00000377767 Ensembl:ENST00000377780 GeneID:22894
KEGG:hsa:22894 UCSC:uc001vix.4 UCSC:uc001viy.4 CTD:22894
GeneCards:GC13M073329 H-InvDB:HIX0011365 HGNC:HGNC:20604
HPA:HPA039281 MIM:607533 neXtProt:NX_Q9Y2L1 PharmGKB:PA162383628
InParanoid:Q9Y2L1 OrthoDB:EOG45B1DT PhylomeDB:Q9Y2L1 ChiTaRS:DIS3
GenomeRNAi:22894 NextBio:43511 ArrayExpress:Q9Y2L1 Bgee:Q9Y2L1
CleanEx:HS_DIS3 Genevestigator:Q9Y2L1 GermOnline:ENSG00000083520
Uniprot:Q9Y2L1
Length = 958
Score = 1456 (517.6 bits), Expect = 3.8e-149, P = 3.8e-149
Identities = 287/564 (50%), Positives = 396/564 (70%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
LF P D+RIP+IRI+TRQ L +RIIVA+D W SRYP GH+VR +G++G+++TE+E
Sbjct: 372 LFTPADKRIPRIRIETRQASTLEGRRIIVAIDGWPRNSRYPNGHFVRNLGDVGEKETETE 431
Query: 74 MVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDA 133
++L+++D+ +PFS VL+ LP +PWS++ +D+ N R DLR L + SVDPPGC DIDDA
Sbjct: 432 VLLLEHDVPHQPFSQAVLSFLPKMPWSITEKDMKN--REDLRHLCICSVDPPGCTDIDDA 489
Query: 134 LHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDIC 193
LHC L +GN EVGVHIADV++F+ PG LD E+++RGT+VYL E+RIDM+P+ L+ ++C
Sbjct: 490 LHCRELENGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLC 549
Query: 194 SLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTD 253
SL+ DV+RLAFS IWE+ AEI+ T++TKSVI S A+L+Y EAQ R+D + + D +TT
Sbjct: 550 SLKCDVDRLAFSCIWEMNHNAEILKTKFTKSVINSKASLTYAEAQLRIDSANMNDDITTS 609
Query: 254 LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLA 313
LR +N LAK +++RRIE+GALTL+S EV+F +D+ETHDP+D+ ++RE N MVEEFML
Sbjct: 610 LRGLNKLAKILKKRRIEKGALTLSSPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLL 669
Query: 314 ANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAV 373
AN+SVA++I +F +LLR+HP+P E L++ A + L + ++K+LA+SLD+A
Sbjct: 670 ANISVAKKIHEEFSEHALLRKHPAPPPSNYEILVKAARSRNLEIKTDTAKSLAESLDQAE 729
Query: 374 GDD-PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVV 432
PY N L+RILATRCM QAVYFCSG +FHHYGLA+P+YTHFTSPIRRYADV+V
Sbjct: 730 SPTFPYLNTLLRILATRCMMQAVYFCSG--MDNDFHHYGLASPIYTHFTSPIRRYADVIV 787
Query: 433 HRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRP-TD 491
HRLL+ ++G D+ +L I NLN+RH+ AQ A R SV HT ++F+ +
Sbjct: 788 HRLLAVAIGADCTYPELTDKHKLADICKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVS 847
Query: 492 TEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDE-QQQKI----------V 540
EA I+ +R N +V +PK+G+EG V+ + + Y DE KI V
Sbjct: 848 EEAYILFVRKNAIVVLIPKYGLEGTVFFEEKDKPNPQLIYDDEIPSLKIEDTVFHVFDKV 907
Query: 541 KMDGNLSYSVLQTVNIHMEVVEPQ 564
K+ L S LQ I M +VEPQ
Sbjct: 908 KVKIMLDSSNLQHQKIRMSLVEPQ 931
>UNIPROTKB|E1BXX6 [details] [associations]
symbol:DIS3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange
factor activity" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0071034 "CUT catabolic process" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0005654 GO:GO:0003723 GO:GO:0005085 GO:GO:0004519
GO:GO:0016075 GO:GO:0000176 GO:GO:0000175 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 KO:K12585 OMA:MPWSITE
SMART:SM00670 GO:GO:0071034 CTD:22894 EMBL:AADN02042596
IPI:IPI00592352 RefSeq:XP_417016.2 ProteinModelPortal:E1BXX6
Ensembl:ENSGALT00000027368 GeneID:418821 KEGG:gga:418821
NextBio:20821959 Uniprot:E1BXX6
Length = 963
Score = 1445 (513.7 bits), Expect = 5.5e-148, P = 5.5e-148
Identities = 282/564 (50%), Positives = 397/564 (70%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
LF+P DR IP+IRI+TRQ L +RIIVA+D W SRYP GH+V+ +G GD++TE+E
Sbjct: 375 LFIPADRSIPRIRIETRQADKLEGQRIIVAIDGWPRNSRYPNGHFVKNLGSAGDKETETE 434
Query: 74 MVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDA 133
++L+++D+ +PFS VL+ LP +PWS++ +D+ R DLR L V SVDPPGC DIDDA
Sbjct: 435 VLLLEHDVPHQPFSQNVLSFLPKMPWSITEKDMK--YREDLRHLYVCSVDPPGCTDIDDA 492
Query: 134 LHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDIC 193
LHC + +GN EVGVHIADV++F+ PG LD+E+++RGT+VYL E+RIDM+P+ L+ ++C
Sbjct: 493 LHCREIENGNLEVGVHIADVSHFIRPGNALDEESARRGTTVYLCEKRIDMVPELLSSNLC 552
Query: 194 SLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTD 253
SLR++V+RLAFS IWE+ +AEI+ TR+TKS+I S A+L+Y EAQ R+D + + D +T
Sbjct: 553 SLRSNVDRLAFSCIWEMNQKAEILKTRFTKSIINSKASLTYAEAQMRIDSAAMNDDITVS 612
Query: 254 LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLA 313
LR +N LAK ++++RI+ GALTL+S EV+F +D+ETHDP+D+ ++RE N MVEEFML
Sbjct: 613 LRGLNKLAKILKKKRIDNGALTLSSPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLL 672
Query: 314 ANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAV 373
ANVSVA++I +FP +LLR+HP+P + L++ A + L + S+KALA+SLD+A
Sbjct: 673 ANVSVAQKIYDEFPEFALLRKHPAPPPSNYDILVKAAKSKNLEIKTDSAKALAESLDKAE 732
Query: 374 GDD-PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVV 432
D PY N L+RIL TRCM QAVYFCSG +FHHYGLA+P+YTHFTSPIRRYAD++V
Sbjct: 733 SPDFPYLNTLLRILTTRCMMQAVYFCSG--MDSDFHHYGLASPIYTHFTSPIRRYADIIV 790
Query: 433 HRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFR-KRPTD 491
HRLL+ ++G D+ +L + NLNYRH+ AQ A R SV HT ++F+ K +
Sbjct: 791 HRLLAVAIGADSTYPELTDKHKLADLCKNLNYRHKMAQYAQRASVAFHTQLFFKTKGVVN 850
Query: 492 TEARIVKIRSNGFIVFVPKFGIEGPVYL------TPRGQKGSG--DWYVDEQQQKI---V 540
+A I+ +R N +V +PK+G+EG V+ TP+ S V++ + V
Sbjct: 851 EDAYILFVRRNAVVVLIPKYGLEGTVFFEEKDKPTPKLDYNSEVPSLTVEDTTLCVFDKV 910
Query: 541 KMDGNLSYSVLQTVNIHMEVVEPQ 564
+ L S +Q I ME+VEP+
Sbjct: 911 TVSVTLDASNIQHQKIRMELVEPK 934
>UNIPROTKB|F1RHF7 [details] [associations]
symbol:DIS3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071034 "CUT catabolic process" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange
factor activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 GO:GO:0005654
GO:GO:0003723 GO:GO:0005085 GO:GO:0004519 GO:GO:0016075
GO:GO:0000176 GO:GO:0000175 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 OMA:MPWSITE GO:GO:0071034
EMBL:FP101966 Ensembl:ENSSSCT00000010370 Uniprot:F1RHF7
Length = 752
Score = 1445 (513.7 bits), Expect = 5.5e-148, P = 5.5e-148
Identities = 287/564 (50%), Positives = 395/564 (70%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
LF P D+RIP+IRI+TRQ L +RIIV++D W SRYP GH+V+ +GE+GD++TE+E
Sbjct: 166 LFTPADKRIPRIRIETRQASTLEGRRIIVSIDGWPRNSRYPNGHFVKNLGEVGDKETETE 225
Query: 74 MVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDA 133
++L+++D+ +PFS VL+ LP +PWS++ +D+ N R DLR L V SVDPPGC DIDDA
Sbjct: 226 VLLLEHDVPHQPFSQAVLSFLPKMPWSITEKDMKN--REDLRHLCVCSVDPPGCTDIDDA 283
Query: 134 LHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDIC 193
LHC L +G+ EVGVHIADV++F+ PG LD E+++RGT+VYL E+RIDM+P+ L+ ++C
Sbjct: 284 LHCRELENGDLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLC 343
Query: 194 SLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTD 253
SLR++V+RLAFS IWE+ AEI+ TR+TKSVI S A+L+Y EAQ R+D + + D +T
Sbjct: 344 SLRSNVDRLAFSCIWEMNHNAEILKTRFTKSVINSKASLTYAEAQMRIDSAAMNDSITAS 403
Query: 254 LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLA 313
LR +N LAK +++RRIE+GALTL+S EV+F +D+ETHDP+D+ ++RE N MVEEFML
Sbjct: 404 LRGLNKLAKILKKRRIEKGALTLSSPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLL 463
Query: 314 ANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAV 373
AN+SVA++I +F +LLR+HP+P E L++ A + L + ++KALADSLDR
Sbjct: 464 ANISVAKKIHEEFSEHALLRKHPAPPPSNYEILVKAAKSKNLEIKTDTAKALADSLDRVD 523
Query: 374 GDD-PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVV 432
PY N L+RILATRCM QAVYFCSG +FHHYGLA+P+YTHFTSPIRRYAD++V
Sbjct: 524 SPIFPYLNTLLRILATRCMMQAVYFCSG--MDNDFHHYGLASPIYTHFTSPIRRYADIIV 581
Query: 433 HRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRP-TD 491
HRLL+ ++G D+ +L + NLN+RH+ AQ A R SV HT ++F+ +
Sbjct: 582 HRLLAVAIGADCTYPELTDKHKLADLCKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVS 641
Query: 492 TEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQ-KI----------V 540
EA I+ +R N +V +PK+G+EG V+ + + Y DE KI V
Sbjct: 642 EEAYILFVRKNAIVVLIPKYGLEGTVFFEEKDKPKPRLIYDDEVPSLKIEDTVFHIFDKV 701
Query: 541 KMDGNLSYSVLQTVNIHMEVVEPQ 564
K+ L S LQ I M +VEPQ
Sbjct: 702 KVRIMLDSSNLQHQKIRMLLVEPQ 725
>FB|FBgn0039183 [details] [associations]
symbol:Dis3 "Dis3" species:7227 "Drosophila melanogaster"
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISS;IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005652 "nuclear lamina" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0071027 "nuclear RNA
surveillance" evidence=IMP] [GO:0010468 "regulation of gene
expression" evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0022008 GO:GO:0003723 GO:GO:0004540 GO:GO:0010468
GO:GO:0005652 GO:GO:0000176 InterPro:IPR022966 PROSITE:PS01175
SMART:SM00670 GO:GO:0071027 FlyBase:FBgn0039183 EMBL:AJ276897
ProteinModelPortal:Q9BI20 STRING:Q9BI20 PRIDE:Q9BI20
InParanoid:Q9BI20 ArrayExpress:Q9BI20 Bgee:Q9BI20 Uniprot:Q9BI20
Length = 983
Score = 1388 (493.7 bits), Expect = 6.1e-142, P = 6.1e-142
Identities = 268/529 (50%), Positives = 372/529 (70%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
+FVP DR+IP+IRI+TRQ L ++RIIV +D+W SRYP GH+VR +G +GD TE+E
Sbjct: 379 IFVPADRKIPRIRIETRQAAMLQNQRIIVTIDTWPRNSRYPHGHFVRSLGPLGDMATENE 438
Query: 74 MVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDA 133
++L+++D+ FS +VL+ LP +PW+++ ED + R+DLRDL + SVDPPGC DIDDA
Sbjct: 439 VILLEHDVPHCKFSDEVLSFLPKMPWTITDEDYSK--RVDLRDLYICSVDPPGCTDIDDA 496
Query: 134 LHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRG-TSVYLVERRIDMLPKPLTEDI 192
LHC L +GN EVGVHIADV++F+ PG S G T+VYLV +RIDM+P+ L+ ++
Sbjct: 497 LHCRELPNGNLEVGVHIADVSHFIRPGKRTGHGGSGPGETTVYLVGKRIDMVPELLSSNL 556
Query: 193 CSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTT 252
CSL VER AFS +WE+ EA ++S R+ KSVIKS A++Y EAQ +DD+ + +
Sbjct: 557 CSLVGGVERFAFSCVWEVDNEANVLSKRFHKSVIKSKRAMTYEEAQNIIDDATQQNEIAK 616
Query: 253 DLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFML 312
LRN+N LAK +++RR++ GAL LAS E++FQ+D+ETH+PL++ + Q+RE N MVEEFML
Sbjct: 617 SLRNLNRLAKILKKRRMDNGALVLASPEIRFQVDSETHEPLEVEVKQMRETNSMVEEFML 676
Query: 313 AANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRA 372
AN++VAE I +F C++LRRHP P +PL+++A G +D++S L+ SLD+
Sbjct: 677 LANITVAEHIATEFSECAVLRRHPRPPPTNFDPLVKSARYQGFQVDINSGLELSHSLDKC 736
Query: 373 V-GDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVV 431
V D+PYFN +IRIL TRCM QAVYF SG L EF HYGLAAP+YTHFTSPIRRY+D++
Sbjct: 737 VKADNPYFNTMIRILTTRCMMQAVYFISGSLQKEEFFHYGLAAPIYTHFTSPIRRYSDIM 796
Query: 432 VHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTD 491
VHRLL+AS+G + DR + NLNYRH+ AQ A R SV L+T ++FR + D
Sbjct: 797 VHRLLAASIGADSTYAQLLDRKSNEELCHNLNYRHKMAQYAGRASVALNTHLFFRGKEED 856
Query: 492 TEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIV 540
E ++ +R N V +PK+G+EG +YL + K D V+ + +IV
Sbjct: 857 EEGYVLFVRKNALQVLIPKYGLEGTLYL--KSDKDGKDG-VERVKSEIV 902
>DICTYBASE|DDB_G0293614 [details] [associations]
symbol:DDB_G0293614 "putative exoribonuclease"
species:44689 "Dictyostelium discoideum" [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
dictyBase:DDB_G0293614 InterPro:IPR006596 GO:GO:0003723
GO:GO:0004540 EMBL:AAFI02000218 GO:GO:0000176 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 KO:K12585 OMA:MPWSITE
SMART:SM00670 RefSeq:XP_629050.1 ProteinModelPortal:Q54BH9
STRING:Q54BH9 EnsemblProtists:DDB0234145 GeneID:8629340
KEGG:ddi:DDB_G0293614 InParanoid:Q54BH9 ProtClustDB:CLSZ2429248
Uniprot:Q54BH9
Length = 1006
Score = 1380 (490.8 bits), Expect = 4.3e-141, P = 4.3e-141
Identities = 276/577 (47%), Positives = 397/577 (68%)
Query: 12 HAL-FVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDT 70
H L F+P D+RIPKIRI++RQ+ NL+ KRI+VA+D WD S+YP GH+V+ +G +GD++T
Sbjct: 370 HFLYFMPIDKRIPKIRIKSRQVSNLIGKRIVVAIDQWDKNSKYPSGHFVKDLGPLGDKET 429
Query: 71 ESEMVLIDNDIDARPFSTQVLACLP-P-LPWSVSSEDLANPIRLDLRDLRVFSVDPPGCK 128
ES+++L+ DI PF V+ CLP P + V+S D+ R DLR +FSVDPPGC
Sbjct: 430 ESQVLLLQFDIPHHPFGAAVMKCLPSPDIMDRVTSADMVG--RKDLRKECIFSVDPPGCT 487
Query: 129 DIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPL 188
DIDDALH L G EVGVHIADV++FV GT +D+EA+ R TSVYLV+RRIDMLP L
Sbjct: 488 DIDDALHIKDLGKGIMEVGVHIADVSHFVQEGTAIDEEAANRSTSVYLVDRRIDMLPGEL 547
Query: 189 TEDICSLRADVERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLM 247
+ ++CSL ++V+R AFS IW++ EII+ YTKS+I+SCA+L+Y +AQ R+DD
Sbjct: 548 SGNLCSLMSNVDRFAFSCIWKINQHTGEIIAVEYTKSIIRSCASLTYEQAQIRIDDKSQN 607
Query: 248 DPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMV 307
D +T +LRN+NSLAK +R++R +RGAL LAS +VKF+ + DP D+ +YQ+RE N M+
Sbjct: 608 DQITVNLRNLNSLAKILRKQRFDRGALYLASPQVKFKTEELGGDPSDVEIYQLRETNSMI 667
Query: 308 EEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD 367
EEFML AN+ VA++I + FP C++LRRHP+P K + L + G ++SK LAD
Sbjct: 668 EEFMLLANIWVAKKIYKHFPGCAMLRRHPTPNKAAFDLLTKLIENKGYKFSTTTSKDLAD 727
Query: 368 SLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRR 426
SLD AV +D YFN L RI+ TRCM+ A YF SG L +F+HYGLA +YTHFTSPIRR
Sbjct: 728 SLDSAVDKNDSYFNTLCRIMTTRCMSPAKYFSSGSLPYEDFNHYGLATDIYTHFTSPIRR 787
Query: 427 YADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFR 486
Y D++VHRLL++++GI + S+ + ++++ +N N+RH+ AQ ASRGS +LHTLI+F+
Sbjct: 788 YPDIIVHRLLASAIGIQSV-SLNLENKTISALTENNNFRHKMAQYASRGSTQLHTLIFFK 846
Query: 487 KRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYL--------TPRGQKGSGDWYVDEQQQK 538
R + +A I+++++N F+V VP++G EG VY+ T G G+ + Y + +
Sbjct: 847 GRKSVEDAYIIRVKANAFVVLVPRYGFEGTVYVSDPNSSTATTNGGGGTSNIYNYNHEDQ 906
Query: 539 IVKMDGNLSYSVLQTVNIHMEVVEPQPNRPKLQLTLI 575
+ +G ++ V V + + V + + + KL++ I
Sbjct: 907 TLG-NGIHTFRVFDKVTVEIYVDDSKAHDQKLKINCI 942
>WB|WBGene00001001 [details] [associations]
symbol:dis-3 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0051537 "2 iron, 2 sulfur cluster
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
InterPro:IPR006596 GO:GO:0005737 GO:GO:0040010 GO:GO:0005730
GO:GO:0040018 GO:GO:0000003 GO:GO:0003723 GO:GO:0004527
GO:GO:0090305 GO:GO:0000178 GO:GO:0004540 GO:GO:0006364
eggNOG:COG0557 HOGENOM:HOG000191945 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 KO:K12585 OMA:MPWSITE
SMART:SM00670 EMBL:Z70718 PIR:T18925 RefSeq:NP_501835.2
ProteinModelPortal:Q17632 SMR:Q17632 STRING:Q17632 PaxDb:Q17632
EnsemblMetazoa:C04G2.6 GeneID:177875 KEGG:cel:CELE_C04G2.6
UCSC:C04G2.6 CTD:177875 WormBase:C04G2.6 InParanoid:Q17632
NextBio:898756 Uniprot:Q17632
Length = 961
Score = 1379 (490.5 bits), Expect = 5.5e-141, P = 5.5e-141
Identities = 277/577 (48%), Positives = 383/577 (66%)
Query: 1 MPMPAGSGSVAHALFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVR 60
M +P+ LF P +R IP+IRI+T Q L +RI+VA+D W S+YP GHYVR
Sbjct: 368 MLLPSTVKGARRHLFCPAERLIPRIRIETEQAETLSQQRIVVAIDHWPRDSKYPLGHYVR 427
Query: 61 VIGEIGDRDTESEMVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPI-RLDLRDLRV 119
IGE+G R+TE+E++L+++DI PFS VL CLP W + P+ R+DLRDL +
Sbjct: 428 SIGEMGSRETENEVLLLEHDIPHAPFSESVLDCLPREEWEPDLTENRGPLPRVDLRDLTI 487
Query: 120 FSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVER 179
SVDP GC DIDDALHC + FEVGVHIADVT+FV PGT +DDEA+ RGT+VYL +R
Sbjct: 488 CSVDPLGCTDIDDALHCKQIGEDLFEVGVHIADVTHFVRPGTAIDDEAALRGTTVYLCDR 547
Query: 180 RIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQA 239
RIDMLP L+ ++CSLR + ER AFS IW +T A+I S +Y KS+IKS AAL+Y +AQ
Sbjct: 548 RIDMLPCLLSSNLCSLRGEEERYAFSCIWTMTSSADIQSVKYHKSLIKSKAALTYEKAQE 607
Query: 240 RMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQ 299
+DD + + + LR + L+K + RR GALTLAS+EV+F +D E+ P + Q
Sbjct: 608 IIDDPKEQNDVALGLRGLMKLSKVLNARRTGNGALTLASSEVRFDMDWESRTPKKVMEKQ 667
Query: 300 IREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDV 359
+ + MVEEFML AN+SVAE+IL ++P C+LLRRHP P KE +PL+ A G + V
Sbjct: 668 HLDTHSMVEEFMLLANISVAEKILEEYPDCALLRRHPVPLKESYKPLVEAARHRGFEIIV 727
Query: 360 SSSKALADSLDRAVGD-DPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYT 418
S K LADSL+R V +P N+L+R+L TRCMTQAVYF +G + P++ H+GLA +YT
Sbjct: 728 ESGKGLADSLNRCVDKKNPMLNRLLRMLTTRCMTQAVYFSAGTVPVPQYQHFGLACAIYT 787
Query: 419 HFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVE 478
HFTSPIRRYADV+VHRLL+A++G + S ++ + T I N+NYRH+ AQ A R SV+
Sbjct: 788 HFTSPIRRYADVIVHRLLAAAIGADDIQSGLLNQARCTKICTNINYRHKQAQYAGRASVQ 847
Query: 479 LHTLIYFRKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQK 538
L+ + YF+ + E ++ +R+NG VFVPK+G+E + L G+ +D ++
Sbjct: 848 LNVVRYFKGKVETCEGFVMGVRNNGIQVFVPKYGLESIIVLQTSAASGTT---IDVEEMS 904
Query: 539 IVKMDGNLSYSVLQTVNIHMEVVEPQPNRPKLQLTLI 575
VK++G++ L+ V + + V E RP+++L LI
Sbjct: 905 -VKVNGDVVIKELEPVTVRISVNEKNQQRPRVELQLI 940
>POMBASE|SPBC26H8.10 [details] [associations]
symbol:dis3 "3'-5' exoribonuclease subunit Dis3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000465 "exonucleolytic
trimming to generate mature 5'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0000467 "exonucleolytic trimming to generate mature 3'-end of
5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004521 "endoribonuclease activity" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008536 "Ran GTPase binding" evidence=IPI] [GO:0032853
"positive regulation of Ran GTPase activity" evidence=IMP]
[GO:0034661 "ncRNA catabolic process" evidence=ISO] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=ISO] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=ISO] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=ISO]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=ISO] InterPro:IPR001900 InterPro:IPR003029
Pfam:PF00773 PROSITE:PS50126 SMART:SM00955 PomBase:SPBC26H8.10
InterPro:IPR006596 GO:GO:0051301 GO:GO:0007067 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0040008 GO:GO:0004521
GO:GO:0071035 GO:GO:0071038 GO:GO:0000176 GO:GO:0000175
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 eggNOG:COG0557 HOGENOM:HOG000191945
InterPro:IPR022966 PROSITE:PS01175 EMBL:M74094 PIR:A41944
RefSeq:NP_596653.1 ProteinModelPortal:P37202 SMR:P37202
STRING:P37202 PRIDE:P37202 EnsemblFungi:SPBC26H8.10.1
GeneID:2540398 KEGG:spo:SPBC26H8.10 KO:K12585 OMA:MPWSITE
OrthoDB:EOG4VHPFH BRENDA:3.1.13.1 NextBio:20801525 GO:GO:0000465
GO:GO:0032853 SMART:SM00670 Uniprot:P37202
Length = 970
Score = 1352 (481.0 bits), Expect = 4.0e-138, P = 4.0e-138
Identities = 275/584 (47%), Positives = 380/584 (65%)
Query: 8 GSVAHALFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGD 67
GS L P DRR+PKIR +TRQ L+ +RI+VA+D WD SRYP GH+VR +GE+
Sbjct: 389 GSQQTVLLTPMDRRVPKIRFRTRQAPRLVGRRIVVAIDLWDASSRYPEGHFVRDLGEMET 448
Query: 68 RDTESEMVLIDNDIDARPFSTQVLACLPPLP--WSVSSEDLANPI---RLDLRDLRVFSV 122
++ E+E +L++ D+ RPF VL CLP W V + D +P+ R D RD + S+
Sbjct: 449 KEAETEALLLEYDVQHRPFPKAVLDCLPEEGHNWKVPA-DKTHPLWKNRKDFRDKLICSI 507
Query: 123 DPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRID 182
DPPGC+DIDDALH L +GN+EVGVHIADVT+FV P T +D EA+ RGT+VYLV++RID
Sbjct: 508 DPPGCQDIDDALHACVLPNGNYEVGVHIADVTHFVKPNTSMDSEAASRGTTVYLVDKRID 567
Query: 183 MLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMD 242
MLP L D+CSLR VER AFS IWE+ A II +TKSVI S A SY +AQAR+D
Sbjct: 568 MLPMLLGTDLCSLRPYVERFAFSCIWEMDENANIIKVHFTKSVIASKEAFSYADAQARID 627
Query: 243 DSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIRE 302
D ++ DPLT +R + L+K ++Q+R++ GAL LAS EV+ Q D ET DP+D+ + Q+ E
Sbjct: 628 DQKMQDPLTQGMRVLLKLSKILKQKRMDEGALNLASPEVRIQTDNETSDPMDVEIKQLLE 687
Query: 303 ANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSP--TK-EMLEPLLRTAAAVGLNLDV 359
N +VEEFML AN+SVA++I FP ++LRRH +P T + L+ +LR G++L
Sbjct: 688 TNSLVEEFMLLANISVAQKIYDAFPQTAVLRRHAAPPLTNFDSLQDILRVCK--GMHLKC 745
Query: 360 SSSKALADSLDRAVGD-DPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYT 418
+SK+LA SLD V +PYFN L+RIL TRCM A YFCSG PP+F HYGLA+P+YT
Sbjct: 746 DTSKSLAKSLDECVDPKEPYFNTLLRILTTRCMLSAEYFCSGTFAPPDFRHYGLASPIYT 805
Query: 419 HFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVE 478
HFTSPIRRYADV+ HR L+A++ + D+ +L I + +NYRHR AQMA R S+E
Sbjct: 806 HFTSPIRRYADVLAHRQLAAAIDYETINPSLSDKSRLIEICNGINYRHRMAQMAGRASIE 865
Query: 479 LHTLIYFRKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQ--KGSGDWYVDEQQ 536
+ + + +A ++K+ NGF+VF+ +FG+EG VY + + ++ DE +
Sbjct: 866 YYVGQALKGGVAEEDAYVIKVFKNGFVVFIARFGLEGIVYTKSLSSVLEPNVEYVEDEYK 925
Query: 537 QKIVKMDG----NLSYSVLQTVNIHMEVVEPQPN-RPKLQLTLI 575
I D + + Q V + + V + + + K+Q+TL+
Sbjct: 926 LNIEIRDQPKPQTVQIQMFQQVRVRVTTVRDEHSGKQKVQITLV 969
>UNIPROTKB|G4NDV8 [details] [associations]
symbol:MGG_00193 "Mitotic control protein dis3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001900 InterPro:IPR003029 Pfam:PF00773
PROSITE:PS50126 SMART:SM00955 InterPro:IPR006596 GO:GO:0005730
EMBL:CM001235 GO:GO:0004521 GO:GO:0000049 GO:GO:0071039
GO:GO:0071035 GO:GO:0071038 GO:GO:0000176 GO:GO:0000175
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 InterPro:IPR022967
SMART:SM00316 InterPro:IPR022966 PROSITE:PS01175 KO:K12585
SMART:SM00670 GO:GO:0071028 RefSeq:XP_003718924.1
ProteinModelPortal:G4NDV8 SMR:G4NDV8 EnsemblFungi:MGG_00193T0
GeneID:2674544 KEGG:mgr:MGG_00193 Uniprot:G4NDV8
Length = 990
Score = 1316 (468.3 bits), Expect = 2.6e-134, P = 2.6e-134
Identities = 268/523 (51%), Positives = 363/523 (69%)
Query: 5 AGSGSVAHALF-VPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIG 63
A G +F +P D++IPKIR++TRQ+G LL KRI+V +D+WD SR+P GH+VR +G
Sbjct: 412 ATQGRKQEVVFLIPMDKKIPKIRLRTRQVGELLGKRILVTIDAWDRDSRHPVGHFVRSLG 471
Query: 64 EIGDRDTESEMVLIDNDIDARPFSTQVLACLPPL--PWSV--SSEDLANPIRLDLRDLRV 119
E+ + E+E +L++ D+ RPF VL CLP W V S++D R DLR L +
Sbjct: 472 ELETKAAETEALLLEYDVQYRPFPKTVLDCLPKEGHDWKVPASTDDPGWRDREDLRGLLI 531
Query: 120 FSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVER 179
S+DP GC+DIDDALH L +GNFEVGVHIADV++FV P +D EAS RGT+VYLV++
Sbjct: 532 CSIDPIGCQDIDDALHARPLPNGNFEVGVHIADVSHFVKPSNAMDTEASIRGTTVYLVDK 591
Query: 180 RIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQA 239
RIDMLP L D+CSL+ VER AFSV+WELTP+A+I++ R+TKSVIKS A SY AQ
Sbjct: 592 RIDMLPMLLGTDLCSLKPYVERFAFSVLWELTPDADIVNARFTKSVIKSREAFSYEAAQI 651
Query: 240 RMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQ 299
R+DD+ D LTT +R + +L+KK++Q+R++ GAL+L+S EVK Q+++ET DP+DI
Sbjct: 652 RVDDASQQDELTTGIRTLLALSKKLKQKRMDAGALSLSSPEVKVQMESETSDPIDIKTKV 711
Query: 300 IREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLL-RTAAAVGLNLD 358
E +VEEFML AN+SVA +I P ++LRRH +P K + L + G L
Sbjct: 712 HLETMSLVEEFMLLANISVARKIYEASPQTAILRRHGAPPKTNFDELANQLKVKKGFELR 771
Query: 359 VSSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLY 417
V SS+ALADSLD V ++P+FN L+RI+ATRCM A YFCSG PEF HYGLA+ +Y
Sbjct: 772 VDSSRALADSLDTCVDPNNPFFNTLVRIMATRCMMSAEYFCSGTQAYPEFRHYGLASEIY 831
Query: 418 THFTSPIRRYADVVVHRLLSASLGIYKL-PSVFQDRPQLTSIADNLNYRHRNAQMASRGS 476
THFTSPIRRYAD+V HR L+A++G + PSV + R +L ++ N+N RHRNAQ+A R S
Sbjct: 832 THFTSPIRRYADLVAHRQLAAAIGYEAVHPSV-RSRGRLEAVCRNINVRHRNAQLAGRAS 890
Query: 477 VELHTLIYFRKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYL 519
V + + + + + I+KI SNGF+V+VP+FG+EG + L
Sbjct: 891 VAYYVGQSLKGKVAEEDGFIMKIFSNGFVVYVPRFGVEGLIRL 933
>CGD|CAL0003527 [details] [associations]
symbol:orf19.5229 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0004521 "endoribonuclease activity" evidence=IEA] [GO:0000049
"tRNA binding" evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IEA] [GO:0070651 "nonfunctional rRNA decay"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IEA] InterPro:IPR001900
InterPro:IPR003029 Pfam:PF00773 PROSITE:PS50126 SMART:SM00955
CGD:CAL0003527 InterPro:IPR006596 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 KO:K12585 SMART:SM00670 EMBL:AACQ01000070
EMBL:AACQ01000071 RefSeq:XP_716298.1 RefSeq:XP_716360.1
ProteinModelPortal:Q5A3P1 SMR:Q5A3P1 STRING:Q5A3P1 GeneID:3641956
GeneID:3642063 KEGG:cal:CaO19.12694 KEGG:cal:CaO19.5229
Uniprot:Q5A3P1
Length = 1004
Score = 1309 (465.8 bits), Expect = 1.4e-133, P = 1.4e-133
Identities = 271/581 (46%), Positives = 374/581 (64%)
Query: 7 SGSVAHALFVP-KDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEI 65
+G + + FV D ++PKIRI+TR+ L +RI+V VDSW SRYP GH+VR +GEI
Sbjct: 423 TGHASRSCFVILMDPKLPKIRIRTRKAREYLGQRIVVVVDSWPINSRYPNGHFVRALGEI 482
Query: 66 GDRDTESEMVLIDNDIDARPFSTQVLACLPPLP--WSV-----SSEDLANPIRLDLRDLR 118
+ E+E +L+++D++ RPFS VL CLP W V ++ED R+DLRD
Sbjct: 483 ESAEAETEALLLEHDVEYRPFSKNVLDCLPKEGDNWVVPDITNNTEDPQLQKRVDLRDKL 542
Query: 119 VFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVE 178
V S+DPP C DIDDALH L +GN+EVGVHIADVT+FV P TPLD E + RGTSVYLV+
Sbjct: 543 VCSIDPPNCVDIDDALHAKQLPNGNYEVGVHIADVTHFVKPNTPLDQEGASRGTSVYLVD 602
Query: 179 RRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQ 238
+RIDMLP+ L ++CSL+ V+R AFSVIWE+ +A I++ Y KS+IKS A SY +AQ
Sbjct: 603 KRIDMLPQLLGTNLCSLKPFVDRFAFSVIWEVDEDANIVNVNYMKSIIKSRQAFSYEQAQ 662
Query: 239 ARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMY 298
R+DD D LT +R + L+KK++Q+R++ GAL LAS EVK +D+ET DP ++ +
Sbjct: 663 LRIDDPSQQDDLTKSMRILLKLSKKLKQKRLDAGALNLASPEVKVHMDSETSDPQEVEIK 722
Query: 299 QIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPL--LRTAAAVGLN 356
++ E N +VEEFML AN+SVA +I +P ++LRRH +P E L + G++
Sbjct: 723 KLLETNSLVEEFMLFANISVARKIYDAYPQTAMLRRHAAPPATNFETLNDMLNVRKNGMS 782
Query: 357 LDVSSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAP 415
+ + SSKALADSLDR + +D YFN L+RI++TRCM A YF SG PEF HYGLA
Sbjct: 783 ISLESSKALADSLDRCIDPNDKYFNTLVRIMSTRCMMAAEYFPSGSYGYPEFRHYGLAVD 842
Query: 416 LYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRG 475
+YTHFTSPIRRY DVV HR L+ ++G L +D+ ++ I N+N RHRNAQ A R
Sbjct: 843 IYTHFTSPIRRYCDVVAHRQLAGAIGYENLDLSHRDKSKMEMIVRNINKRHRNAQFAGRS 902
Query: 476 SVELHTLIYFRKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQ 535
S+E + R ++ E I+KI +NG +V VPKFG+EG + L G S ++ D+
Sbjct: 903 SIEYYVGQVMRNNESEHEGYIIKIFNNGIVVLVPKFGVEGLIKLENMGDVNSANYNEDKY 962
Query: 536 QQKIVKMDGN-LSYSVLQTVNIHMEVVEPQ-PNRPKLQLTL 574
+ GN + +V V + ++ V+ + + K QL L
Sbjct: 963 ELTFTDFKGNERTIAVFDKVKVDVKSVKDEISGKRKAQLML 1003
>UNIPROTKB|F1N1R4 [details] [associations]
symbol:DIS3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071034 "CUT catabolic process" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange
factor activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0005654 GO:GO:0003723 GO:GO:0005085 GO:GO:0004519
GO:GO:0016075 GO:GO:0000176 GO:GO:0000175 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 OMA:MPWSITE
SMART:SM00670 GO:GO:0071034 EMBL:DAAA02033486 EMBL:DAAA02033485
IPI:IPI01017508 Ensembl:ENSBTAT00000026500 Uniprot:F1N1R4
Length = 951
Score = 1306 (464.8 bits), Expect = 3.0e-133, P = 3.0e-133
Identities = 270/564 (47%), Positives = 376/564 (66%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
LF P D+RIP+IRI+TRQ L +RIIVAVD W SRYP GH+V+ +GE+GD++TE+E
Sbjct: 372 LFTPADKRIPRIRIETRQASTLEGRRIIVAVDGWPRNSRYPNGHFVKNLGEVGDKETETE 431
Query: 74 MVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDA 133
++L+++D+ + FS VL+ LP +PWS++ +D+ N R DLR L V SVDPPGC DIDDA
Sbjct: 432 VLLLEHDVPHQAFSQAVLSFLPKMPWSITEKDMKN--REDLRHLCVCSVDPPGCTDIDDA 489
Query: 134 LHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDIC 193
LHC L +GN EVGVHIADV++F+ PG LD E+++RGT+VYL E+RID + + +
Sbjct: 490 LHCRELENGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDXFTELVVGNKA 549
Query: 194 SLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTD 253
S D E S + +L ++I+ Y K+++ A+L+Y EAQ R+D + + D +TT
Sbjct: 550 SCETDKE----SCVNDLNFPSKIL---YEKNLVNIQASLTYAEAQMRIDSAAMNDNITTS 602
Query: 254 LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLA 313
LR +N LAK +++ RIE+GALTL+S EV+F +D+ETHDP+D+ ++RE N MVEEFML
Sbjct: 603 LRGLNKLAKILKKGRIEKGALTLSSPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLL 662
Query: 314 ANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAV 373
AN+SVA++I +F +LLR+HP+P E L++ A + L + ++KALADSLD+A
Sbjct: 663 ANISVAKKIHEEFSEHALLRKHPAPPPSNYEILVKAAKSKNLEIKTDTAKALADSLDQAD 722
Query: 374 GDD-PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVV 432
PY N L+RILATRCM QAVYFCSG +FHHYGLA+P+YTHFTSPIRRYAD++V
Sbjct: 723 SPIFPYLNTLLRILATRCMMQAVYFCSG--MDNDFHHYGLASPIYTHFTSPIRRYADIIV 780
Query: 433 HRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRP-TD 491
HRLL+ ++G D+ +L + NLN+RH+ AQ A R SV HT ++F+ +
Sbjct: 781 HRLLAVAIGADCTYPELTDKHKLADLCKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVS 840
Query: 492 TEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDE-QQQKI----------V 540
EA I+ +R N +V +PK+G+EG V+ + + Y DE KI V
Sbjct: 841 EEAYILFVRKNAIVVLIPKYGLEGTVFFEEKDKPNPRLIYDDEIPSLKIEDTVFHVFDKV 900
Query: 541 KMDGNLSYSVLQTVNIHMEVVEPQ 564
K+ L S LQ I M +VEPQ
Sbjct: 901 KVKIMLDSSNLQHQKIRMSLVEPQ 924
>SGD|S000005381 [details] [associations]
symbol:DIS3 "Exosome core complex catalytic subunit"
species:4932 "Saccharomyces cerevisiae" [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=IC] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IDA] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IEA;IDA]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IMP;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=IMP]
[GO:0070651 "nonfunctional rRNA decay" evidence=IMP] [GO:0004521
"endoribonuclease activity" evidence=IMP;IDA] [GO:0000178 "exosome
(RNase complex)" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=IMP] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IMP]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IGI;IMP;IDA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IMP]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0000049 "tRNA
binding" evidence=IDA;IMP] [GO:0070481 "nuclear-transcribed mRNA
catabolic process, non-stop decay" evidence=IC] [GO:0043628 "ncRNA
3'-end processing" evidence=IMP] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IC]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=IC]
InterPro:IPR001900 InterPro:IPR003029 Pfam:PF00773 PROSITE:PS50126
SMART:SM00955 SGD:S000005381 InterPro:IPR006596 GO:GO:0005739
GO:GO:0005730 EMBL:BK006948 GO:GO:0004521 GO:GO:0000049
GO:GO:0071039 GO:GO:0071035 GO:GO:0071038 GO:GO:0000176
GO:GO:0000175 GO:GO:0000177 GO:GO:0000467 GO:GO:0070651
GO:GO:0071042 GO:GO:0070478 GO:GO:0070481 InterPro:IPR022967
SMART:SM00316 GO:GO:0071051 eggNOG:COG0557 HOGENOM:HOG000191945
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
KO:K12585 OMA:MPWSITE OrthoDB:EOG4VHPFH SMART:SM00670 GO:GO:0071028
PDB:2WP8 PDBsum:2WP8 EMBL:D76430 EMBL:Z74763 PIR:S66704
RefSeq:NP_014621.1 PDB:2VNU PDBsum:2VNU ProteinModelPortal:Q08162
SMR:Q08162 DIP:DIP-2355N IntAct:Q08162 MINT:MINT-614156
STRING:Q08162 PaxDb:Q08162 PeptideAtlas:Q08162 EnsemblFungi:YOL021C
GeneID:854138 KEGG:sce:YOL021C CYGD:YOL021c
EvolutionaryTrace:Q08162 NextBio:975871 Genevestigator:Q08162
GermOnline:YOL021C Uniprot:Q08162
Length = 1001
Score = 1266 (450.7 bits), Expect = 5.2e-129, P = 5.2e-129
Identities = 268/589 (45%), Positives = 373/589 (63%)
Query: 7 SGSVAHALFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIG 66
S S + + D+ +PK+RI+TR+ LLDKRI++++DSW +YP GH+VR +G I
Sbjct: 416 SSSTQNVFVILMDKCLPKVRIRTRRAAELLDKRIVISIDSWPTTHKYPLGHFVRDLGTIE 475
Query: 67 DRDTESEMVLIDNDIDARPFSTQVLACLP--------PL----PWSVSSEDLANPIRLDL 114
E+E +L+++D++ RPFS +VL CLP P P +VS + L R DL
Sbjct: 476 SAQAETEALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTK-RKDL 534
Query: 115 RDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSV 174
RD + S+DPPGC DIDDALH L +GN+EVGVHIADVT+FV PGT LD E + RGTSV
Sbjct: 535 RDKLICSIDPPGCVDIDDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSV 594
Query: 175 YLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSY 234
YLV++RIDMLP L D+CSL+ V+R AFSVIWEL A I++ + KSVI+S A SY
Sbjct: 595 YLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSY 654
Query: 235 VEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLD 294
+AQ R+DD D LT +R + L+ K++Q+R+E GAL LAS EVK +D+ET DP +
Sbjct: 655 EQAQLRIDDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNE 714
Query: 295 IGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRH---PSPTKEMLEPLLRTAA 351
+ + ++ N +VEEFML AN+SVA +I FP ++LRRH PS E+L +L T
Sbjct: 715 VEIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRK 774
Query: 352 AVGLNLDVSSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHY 410
+ ++L+ SSKALADSLDR V +DPYFN L+RI++TRCM A YF SG + P+F HY
Sbjct: 775 NMSISLE--SSKALADSLDRCVDPEDPYFNTLVRIMSTRCMMAAQYFYSGAYSYPDFRHY 832
Query: 411 GLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQ 470
GLA +YTHFTSPIRRY DVV HR L+ ++G L +D+ ++ I N+N +HRNAQ
Sbjct: 833 GLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQ 892
Query: 471 MASRGSVELHTLIYFRKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDW 530
A R S+E + R + ++K+ +NG +V VPKFG+EG + L + +
Sbjct: 893 FAGRASIEYYVGQVMRNNESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAA 952
Query: 531 YVDEQQQKIVKMDGNLSYS----VLQTVNIHME-VVEPQPNRPKLQLTL 574
+ DE + K+ + N V V + + V++P ++ K +L L
Sbjct: 953 F-DEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPITSKRKAELLL 1000
>ASPGD|ASPL0000011287 [details] [associations]
symbol:AN3657 species:162425 "Emericella nidulans"
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0000467
"exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IEA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IEA]
[GO:0070651 "nonfunctional rRNA decay" evidence=IEA] [GO:0071038
"nuclear polyadenylation-dependent tRNA catabolic process"
evidence=IEA] [GO:0004521 "endoribonuclease activity" evidence=IEA]
[GO:0000049 "tRNA binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0005730 EMBL:BN001302 EMBL:AACD01000061 GO:GO:0004521
GO:GO:0000049 GO:GO:0071039 GO:GO:0071035 GO:GO:0071038
GO:GO:0000467 GO:GO:0070651 eggNOG:COG0557 HOGENOM:HOG000191945
InterPro:IPR022966 PROSITE:PS01175 KO:K12585 OMA:MPWSITE
OrthoDB:EOG4VHPFH SMART:SM00670 GO:GO:0071028 RefSeq:XP_661261.1
ProteinModelPortal:Q5B723 SMR:Q5B723 STRING:Q5B723
EnsemblFungi:CADANIAT00005078 GeneID:2873078 KEGG:ani:AN3657.2
Uniprot:Q5B723
Length = 1015
Score = 1217 (433.5 bits), Expect = 8.0e-124, P = 8.0e-124
Identities = 261/546 (47%), Positives = 357/546 (65%)
Query: 2 PMPAGS---GSVAHALFV-PKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGH 57
P GS G +FV P ++++PKIR++TRQ LL +RI+V +D+W+ SRYP GH
Sbjct: 386 PTSTGSQTTGRRQQNVFVLPMEKKVPKIRVRTRQATELLGQRILVTIDAWNRDSRYPTGH 445
Query: 58 YVRVIGEIGDRDTESEMVLIDNDIDARPFSTQVLACLPPL--PWSV--SSEDLANPIRLD 113
++R +GE+ + E+E +L++ D+ +PF VL CLPP W V S +D+ R D
Sbjct: 446 FIRSLGELETKSAETEALLLEWDVQYKPFPKAVLECLPPEGHDWRVPASKDDIGWRGRRD 505
Query: 114 LRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTS 173
LRDL + S+DPPGC+DIDDALH L +GNFEVGVHIADV++FV P +D EAS RGT+
Sbjct: 506 LRDLLICSIDPPGCQDIDDALHARKLPNGNFEVGVHIADVSHFVKPNNAMDLEASVRGTT 565
Query: 174 VYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALS 233
VYLV++RIDMLP L D+CSL+ VER AFSV+WE+TP+AE++S +TKSVI+S A S
Sbjct: 566 VYLVDKRIDMLPHLLGTDLCSLKPYVERYAFSVLWEMTPDAEVVSADFTKSVIRSREAFS 625
Query: 234 YVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDT-ETHDP 292
Y +AQ R+DD D LT +R + L+K +RQ+R++ GAL LAS EV+ + D E DP
Sbjct: 626 YEQAQLRIDDPSKTDELTESMRTLLHLSKILRQKRMDAGALNLASPEVRIEADNDEVGDP 685
Query: 293 L-DIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAA 351
L D+ + N +VEEFML AN++VA +I FP ++LRRH +P + E L+
Sbjct: 686 LADVKTKAMLATNSLVEEFMLHANITVAAKIYSTFPQTAMLRRHATPPPQNFEELINQLT 745
Query: 352 AV-GLNLDVSSSKALADSLDRAV-GDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHH 409
+ LDVSSS+ALADSLDR ++P+FN L+RILATRCMT A YFC+G EF H
Sbjct: 746 KKRDMRLDVSSSRALADSLDRCTDAENPFFNTLVRILATRCMTSAEYFCAGAHAESEFRH 805
Query: 410 YGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLP---SVFQD---RPQLTSIADNLN 463
YGLA+P+YTHFTSPIRRYAD++VHR L+A++ Y+ + + R +L I N+N
Sbjct: 806 YGLASPIYTHFTSPIRRYADLLVHRQLAAAIN-YEGEDGRATIEGSITRNRLEDICRNIN 864
Query: 464 YRHRNAQMASRGSVELHT--LIYFRKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTP 521
YRHRNAQ A R S+E + + R T + I +G+++ V + G+ V P
Sbjct: 865 YRHRNAQHAGRASIEYYVGQALKARSEKLATNGVDIGIEEDGYVMRVFENGV---VVFVP 921
Query: 522 R-GQKG 526
R G +G
Sbjct: 922 RFGIEG 927
Score = 347 (127.2 bits), Expect = 2.1e-28, P = 2.1e-28
Identities = 75/162 (46%), Positives = 101/162 (62%)
Query: 375 DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHR 434
++P+FN L+RILATRCMT A YFC+G EF HYGLA+P+YTHFTSPIRRYAD++VHR
Sbjct: 771 ENPFFNTLVRILATRCMTSAEYFCAGAHAESEFRHYGLASPIYTHFTSPIRRYADLLVHR 830
Query: 435 LLSASL------GIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKR 488
L+A++ G + R +L I N+NYRHRNAQ A R S+E + + R
Sbjct: 831 QLAAAINYEGEDGRATIEGSIT-RNRLEDICRNINYRHRNAQHAGRASIEYYVGQALKAR 889
Query: 489 PT-----------DTEARIVKIRSNGFIVFVPKFGIEGPVYL 519
+ + ++++ NG +VFVP+FGIEG V L
Sbjct: 890 SEKLATNGVDIGIEEDGYVMRVFENGVVVFVPRFGIEGVVRL 931
>ZFIN|ZDB-GENE-070209-95 [details] [associations]
symbol:dis3l "DIS3 mitotic control homolog (S.
cerevisiae)-like" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=ISS] [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
ZFIN:ZDB-GENE-070209-95 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:CABZ01003662 IPI:IPI00493157
ProteinModelPortal:F1Q9I9 Ensembl:ENSDART00000075176 Bgee:F1Q9I9
Uniprot:F1Q9I9
Length = 1057
Score = 526 (190.2 bits), Expect = 6.9e-100, Sum P(2) = 6.9e-100
Identities = 120/294 (40%), Positives = 179/294 (60%)
Query: 247 MDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQM 306
M L L + +A+ +R +R + GAL L EV+ Q+D E + + + E ++
Sbjct: 614 MSELLQALETLTRVARHLRAQRDKGGALELEGVEVRAQLDEEKNITALVPKQPL-EVHET 672
Query: 307 VEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALA 366
V E M+ AN VA +I FP +LLR HP P +E L+ +A A G ++D S++ALA
Sbjct: 673 VAECMIYANHWVARKIQESFPHHALLRHHPPPKQEFFNHLIDSAKAHGFSIDTRSNRALA 732
Query: 367 DSLDRAVGD-DPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIR 425
DSL+RAV DP N+L+R++AT+ M+ A+YF +G +++HYGLA YTHFTSPIR
Sbjct: 733 DSLERAVDPRDPLVNRLLRMMATQAMSNALYFSTGSCPEEQYYHYGLALARYTHFTSPIR 792
Query: 426 RYADVVVHRLLSASLGIYK--LPS-VFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTL 482
RYADV+VHRLL A++ + K PS +L +A ++N ++R AQ + + S+EL
Sbjct: 793 RYADVIVHRLLMAAVQLEKDESPSKTLACNKELEELAQHINNKNRAAQHSQKQSIELFQC 852
Query: 483 IYFRKRPTDTEARIVK------IRSNGFIVFVPKFGIEGPVYLTPR-GQKGSGD 529
+YFR + + T+ R V +R+NGF+ FVP++G++G VYL R GQ S D
Sbjct: 853 MYFRDKDSHTDERCVADAVIYAVRANGFLAFVPQYGLKGAVYLKDREGQVISVD 906
Score = 504 (182.5 bits), Expect = 6.9e-100, Sum P(2) = 6.9e-100
Identities = 118/291 (40%), Positives = 169/291 (58%)
Query: 3 MPAGSGSVAHALFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVI 62
M + S + L VP D RIPKIRI T+Q L D+R+IV +DSW+ S YP GH+VRV+
Sbjct: 349 MQSQSRNSQKILVVPWDYRIPKIRISTQQAEALQDQRVIVRLDSWESTSVYPNGHFVRVL 408
Query: 63 GEIGDRDTESEMVLIDNDIDARPFSTQVLACLP----PLPWSVSSEDLANPIRLDLRDLR 118
G+ G+ +TE + +L++N I PFS L +P PW + S ++++ R DLRD
Sbjct: 409 GKSGELETEIQTILVENCIHVPPFSEAQLREMPVNTEENPWQMDSNEVSS--RRDLRDSH 466
Query: 119 -VFSVDPPGCKDIDDALHCTALSSGN-FEVGVHIADVTNFVHPGTPLDDEASKRGTSVYL 176
VFS+DP GC+D+DD L G E+GVHIADVT+FV G+ D EA R T+ YL
Sbjct: 467 LVFSIDPKGCEDVDDTLSVRTQPGGKRLELGVHIADVTHFVREGSLTDLEARSRATTYYL 526
Query: 177 VERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYV 235
+RR DMLP L+ D+CSL V+R A SV+WEL E E+ S + +++I+S L Y
Sbjct: 527 ADRRYDMLPAVLSADLCSLLGGVDRYAMSVLWELDAETLEVCSVWFGRTLIRSSYQLHYE 586
Query: 236 EAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQID 286
AQ+ ++ + P L+ + +KM + LT + ++ Q D
Sbjct: 587 LAQSLLNGEEVEVPELNPLKG-SQRDQKMSELLQALETLTRVARHLRAQRD 636
>UNIPROTKB|Q5R5N8 [details] [associations]
symbol:DIS3L "DIS3-like exonuclease 1" species:9601 "Pongo
abelii" [GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 GO:GO:0003723
GO:GO:0000175 GO:GO:0000177 CTD:115752 HOGENOM:HOG000191945
HOVERGEN:HBG059397 InterPro:IPR022966 PROSITE:PS01175 EMBL:CR860819
RefSeq:NP_001126723.1 UniGene:Pab.8044 ProteinModelPortal:Q5R5N8
GeneID:100173724 KEGG:pon:100173724 Uniprot:Q5R5N8
Length = 1054
Score = 527 (190.6 bits), Expect = 1.1e-99, Sum P(2) = 1.1e-99
Identities = 116/263 (44%), Positives = 158/263 (60%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
L P D RIPKIRI T+Q L D R++V +DSW+ S YP GH+VRV+G IGD + E
Sbjct: 366 LVTPWDYRIPKIRISTQQAETLQDFRVVVRIDSWESTSVYPNGHFVRVLGRIGDLEGEIA 425
Query: 74 MVLIDNDIDARPFSTQVLACLP---PL-PWSVSSEDLANPIRLDLRDLR-VFSVDPPGCK 128
+L++N I PFS + +P P PW VS E+ R DLR VFS+DP GC+
Sbjct: 426 TILVENSISVIPFSEAQMCEMPVNTPENPWKVSPEEEQK--RKDLRKSHLVFSIDPKGCE 483
Query: 129 DIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPL 188
D+DD L L++GN E+GVHIADVT+FV P + +D EA R T+ YL +RR DMLP L
Sbjct: 484 DVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDIEARTRATTYYLADRRYDMLPSVL 543
Query: 189 TEDICSLRADVERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLM 247
+ D+CSL V+R A S++WEL + EI Y +++I+S L Y AQ +D +
Sbjct: 544 SADLCSLLGGVDRYAVSIMWELDKASYEIKKVWYGRTIIRSAYKLFYEAAQELLDGNL-- 601
Query: 248 DPLTTDLRNMNSLAKKMRQRRIE 270
+ D+ L +K RQ ++E
Sbjct: 602 -SVVDDIPEFKDLDEKSRQAKLE 623
Score = 501 (181.4 bits), Expect = 1.1e-99, Sum P(2) = 1.1e-99
Identities = 116/284 (40%), Positives = 167/284 (58%)
Query: 247 MDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQM 306
++ L + + +A+ +R +R GAL L EV+ Q+D + + D+ Q E ++
Sbjct: 622 LEELVWAIGKLTDIARHVRAKRDGCGALELEGVEVRVQLDDKKNIH-DLIPKQPLEVHET 680
Query: 307 VEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALA 366
V E M+ AN VA++I FP +LLR+HP P +E L A A G +D S+K LA
Sbjct: 681 VAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLA 740
Query: 367 DSLDRAVGD-DPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIR 425
DSLD A G DP N+L+R +AT+ M+ A+YF +G EFHHYGLA YTHFTSPIR
Sbjct: 741 DSLDNANGPHDPIVNRLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIR 800
Query: 426 RYADVVVHRLLSASLGIYKLPSV----FQDRPQLTSIADNLNYRHRNAQMASRGSVELHT 481
RY+D+VVHRLL A++ K + F ++ L + ++N R+R AQ + + S EL
Sbjct: 801 RYSDIVVHRLLMAAISKDKKMEIKGNLFSNK-DLEELCRHINNRNRAAQHSQKQSTELFQ 859
Query: 482 LIYFRKRPTDTEAR------IVKIRSNGFIVFVPKFGIEGPVYL 519
+YF+ + TE R I IR+NG +VF+P+FGI+G YL
Sbjct: 860 CMYFKDKDPATEERCISDGVIYSIRANGVLVFIPRFGIKGAAYL 903
Score = 38 (18.4 bits), Expect = 4.5e-48, Sum P(2) = 4.5e-48
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 213 EAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDP-LTTDL 254
EA I S RY + ++ + +EA R+ + D L +D+
Sbjct: 235 EAGIKSGRYIQGILNVNKHRAQIEAFVRLQGASSKDSDLVSDI 277
Score = 37 (18.1 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 300 IREANQMVEEFMLAANVSV 318
++E + VEE LA V V
Sbjct: 997 VKEVTKSVEEAQLAQEVKV 1015
>UNIPROTKB|Q0P4R5 [details] [associations]
symbol:dis3l "DIS3-like exonuclease 1" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISS] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=ISS] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0003723 GO:GO:0000175 GO:GO:0000177 CTD:115752
eggNOG:COG0557 HOGENOM:HOG000191945 HOVERGEN:HBG059397
InterPro:IPR022966 PROSITE:PS01175 EMBL:BC121935
RefSeq:NP_001072835.1 UniGene:Str.52789 ProteinModelPortal:Q0P4R5
STRING:Q0P4R5 GeneID:780296 KEGG:xtr:780296 Xenbase:XB-GENE-1013178
Uniprot:Q0P4R5
Length = 1039
Score = 533 (192.7 bits), Expect = 7.5e-98, Sum P(2) = 7.5e-98
Identities = 118/247 (47%), Positives = 153/247 (61%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
L +P D RIPKIRI T+Q L D R++V +DSW+ S YP GH+VRV+G G+ + E
Sbjct: 360 LVMPWDYRIPKIRISTQQAEALQDYRVVVRIDSWESTSLYPNGHFVRVLGRTGNLEAEIA 419
Query: 74 MVLIDNDIDARPFSTQVLACLP---P-LPWSVSSEDLANPIRLDLRDLR-VFSVDPPGCK 128
+L++N I PFS LA +P P PW V E+ RLDLR VFS+DP GC+
Sbjct: 420 TILVENSISVNPFSEAQLAEMPSNTPESPWQVKPEE---GDRLDLRKTHLVFSIDPKGCE 476
Query: 129 DIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPL 188
D+DDAL L SG+ E+GVHIADVT+FV P T D EA R T+ YL +RR DMLP L
Sbjct: 477 DVDDALSIRKLPSGHLELGVHIADVTHFVPPNTYTDIEARSRATTYYLADRRYDMLPLIL 536
Query: 189 TEDICSLRADVERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLM 247
+ D+CSL V+R A SVIWE+ EI Y +++I+S LSY AQ MD +
Sbjct: 537 SADLCSLLGGVDRYAVSVIWEMDSSTYEIRRVWYGRTIIRSSYKLSYEVAQQLMDGD--L 594
Query: 248 DPLTTDL 254
+PL T++
Sbjct: 595 EPLNTEM 601
Score = 477 (173.0 bits), Expect = 7.5e-98, Sum P(2) = 7.5e-98
Identities = 111/287 (38%), Positives = 168/287 (58%)
Query: 240 RMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQ 299
+ D RL + L + + +A R RR GAL L EV+ Q+ E H D+ Q
Sbjct: 607 KQDPVRL-EQLLWAVGKLTEVAHATRMRRDMSGALELEGVEVRVQLG-EKHSIDDLVPKQ 664
Query: 300 IREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDV 359
+ ++ + E M+ AN VA++I +P +LLR HP +E + L A A G ++D
Sbjct: 665 PLQMHETIAECMILANHWVAKKIWECYPQHALLRLHPPARQEFFQELKECAKARGFSIDT 724
Query: 360 SSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYT 418
S+KALADSLD+A DP N+L+R++AT+ M+ A YF +G T EF+HYGLA YT
Sbjct: 725 RSNKALADSLDQANDPSDPLVNQLLRMMATQAMSNARYFSTGSYTEDEFYHYGLALEKYT 784
Query: 419 HFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVE 478
HFTSPIRRYAD+VVHRLL A++ ++ ++ L + ++N R+R AQ + S E
Sbjct: 785 HFTSPIRRYADIVVHRLLLAAVNKGPKDNLLGNK-DLEELCRHINVRNRAAQHCQKQSTE 843
Query: 479 LHTLIYFRKRPTDTEARIVK------IRSNGFIVFVPKFGIEGPVYL 519
L ++F+ + D++ R + IR+NG ++F+P++GI+G YL
Sbjct: 844 LFQCMFFKDKDPDSDQRCISDAVIYGIRTNGVLLFLPRYGIKGAAYL 890
>UNIPROTKB|Q8TF46 [details] [associations]
symbol:DIS3L "DIS3-like exonuclease 1" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IMP;IDA] [GO:0016075
"rRNA catabolic process" evidence=IMP;IDA] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 GO:GO:0005886
GO:GO:0005813 GO:GO:0003723 GO:GO:0016075 EMBL:CH471082
GO:GO:0000175 GO:GO:0000177 CTD:115752 eggNOG:COG0557
HOGENOM:HOG000191945 HOVERGEN:HBG059397 InterPro:IPR022966
PROSITE:PS01175 EMBL:AB075835 EMBL:AK095407 EMBL:AC055855
EMBL:BC014124 EMBL:BC022089 IPI:IPI00291003 IPI:IPI00295876
IPI:IPI00879677 IPI:IPI00879828 RefSeq:NP_001137160.1
RefSeq:NP_588616.1 UniGene:Hs.446251 ProteinModelPortal:Q8TF46
SMR:Q8TF46 IntAct:Q8TF46 STRING:Q8TF46 PhosphoSite:Q8TF46
DMDM:166201903 PaxDb:Q8TF46 PeptideAtlas:Q8TF46 PRIDE:Q8TF46
DNASU:115752 Ensembl:ENST00000319194 Ensembl:ENST00000319212
GeneID:115752 KEGG:hsa:115752 UCSC:uc002app.3 UCSC:uc002apq.2
GeneCards:GC15P066585 HGNC:HGNC:28698 HPA:HPA041805 MIM:614183
neXtProt:NX_Q8TF46 PharmGKB:PA162383675 InParanoid:Q8TF46
OMA:IPRFGIK ChiTaRS:DIS3L GenomeRNAi:115752 NextBio:79674
ArrayExpress:Q8TF46 Bgee:Q8TF46 CleanEx:HS_DIS3L
Genevestigator:Q8TF46 Uniprot:Q8TF46
Length = 1054
Score = 528 (190.9 bits), Expect = 8.6e-98, Sum P(2) = 8.6e-98
Identities = 116/263 (44%), Positives = 158/263 (60%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
L P D RIPKIRI T+Q L D R++V +DSW+ S YP GH+VRV+G IGD + E
Sbjct: 366 LVTPWDYRIPKIRISTQQAETLQDFRVVVRIDSWESTSVYPNGHFVRVLGRIGDLEGEIA 425
Query: 74 MVLIDNDIDARPFSTQVLACLP---P-LPWSVSSEDLANPIRLDLRDLR-VFSVDPPGCK 128
+L++N I PFS + +P P PW VS E+ R DLR VFS+DP GC+
Sbjct: 426 TILVENSISVIPFSEAQMCEMPVNTPESPWKVSPEEEQK--RKDLRKSHLVFSIDPKGCE 483
Query: 129 DIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPL 188
D+DD L L++GN E+GVHIADVT+FV P + +D EA R T+ YL +RR DMLP L
Sbjct: 484 DVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDIEARTRATTYYLADRRYDMLPSVL 543
Query: 189 TEDICSLRADVERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLM 247
+ D+CSL V+R A S++WEL + EI Y +++I+S L Y AQ +D +
Sbjct: 544 SADLCSLLGGVDRYAVSIMWELDKASYEIKKVWYGRTIIRSAYKLFYEAAQELLDGNL-- 601
Query: 248 DPLTTDLRNMNSLAKKMRQRRIE 270
+ D+ L +K RQ ++E
Sbjct: 602 -SVVDDIPEFKDLDEKSRQAKLE 623
Score = 482 (174.7 bits), Expect = 8.6e-98, Sum P(2) = 8.6e-98
Identities = 113/284 (39%), Positives = 165/284 (58%)
Query: 247 MDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQM 306
++ L + + +A+ +R +R GAL L EV Q+D + + D+ Q E ++
Sbjct: 622 LEELVWAIGKLTDIARHVRAKRDGCGALELEGVEVCVQLDDKKNIH-DLIPKQPLEVHET 680
Query: 307 VEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALA 366
V E M+ AN VA++I FP +LLR+HP P +E L A A G +D S+K LA
Sbjct: 681 VAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLA 740
Query: 367 DSLDRAVGD-DPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIR 425
DSLD A DP N+L+R +AT+ M+ A+YF +G EFHHYGLA YTHFTSPIR
Sbjct: 741 DSLDNANDPHDPIVNRLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIR 800
Query: 426 RYADVVVHRLLSASLGIYKLPSV----FQDRPQLTSIADNLNYRHRNAQMASRGSVELHT 481
RY+D+VVHRLL A++ K + F ++ L + ++N R++ AQ + + S EL
Sbjct: 801 RYSDIVVHRLLMAAISKDKKMEIKGNLFSNK-DLEELCRHINNRNQAAQHSQKQSTELFQ 859
Query: 482 LIYFRKRPTDTEAR------IVKIRSNGFIVFVPKFGIEGPVYL 519
+YF+ + TE R I IR+NG ++F+P+FGI+G YL
Sbjct: 860 CMYFKDKDPATEERCISDGVIYSIRTNGVLLFIPRFGIKGAAYL 903
Score = 38 (18.4 bits), Expect = 5.1e-46, Sum P(2) = 5.1e-46
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 213 EAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDP-LTTDL 254
EA I S RY + ++ + +EA R+ + D L +D+
Sbjct: 235 EAGIKSGRYIQGILNVNKHRAQIEAFVRLQGASSKDSDLVSDI 277
Score = 37 (18.1 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 300 IREANQMVEEFMLAANVSV 318
++E + VEE LA V V
Sbjct: 997 VKEVTKSVEEAQLAQEVKV 1015
>UNIPROTKB|Q6GN11 [details] [associations]
symbol:dis3l "DIS3-like exonuclease 1" species:8355
"Xenopus laevis" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=ISS] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
GO:GO:0003723 GO:GO:0000175 GO:GO:0000177 CTD:115752
HOVERGEN:HBG059397 InterPro:IPR022966 PROSITE:PS01175 EMBL:BC073711
RefSeq:NP_001086021.1 UniGene:Xl.3437 ProteinModelPortal:Q6GN11
GeneID:444450 KEGG:xla:444450 Xenbase:XB-GENE-1013183
Uniprot:Q6GN11
Length = 1040
Score = 510 (184.6 bits), Expect = 3.1e-97, Sum P(2) = 3.1e-97
Identities = 113/246 (45%), Positives = 151/246 (61%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
L +P D RIPKIRI T+Q L + R++V +DSW+ S YP GH+VR +G G+ + E
Sbjct: 361 LVMPWDYRIPKIRISTQQAEALQNYRVVVRIDSWESNSLYPNGHFVRALGRAGNLEAEIA 420
Query: 74 MVLIDNDIDARPFSTQVLACLPPL----PWSVSSEDLANPIRLDLRDLR-VFSVDPPGCK 128
+L++N I PFS LA +P PW V E+ RLDLR+ VFS+DP GC+
Sbjct: 421 TILVENSISLNPFSEAQLAEMPSNTHENPWQVKPEE---GDRLDLRETHLVFSIDPKGCE 477
Query: 129 DIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPL 188
D+DDAL L SG+ E+GVHIADVT+FV T D EA R T+ YL +RR DMLP L
Sbjct: 478 DVDDALSIRVLPSGDLELGVHIADVTHFVQHNTYTDIEARSRATTYYLADRRNDMLPLIL 537
Query: 189 TEDICSLRADVERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLM 247
+ D+CSL V+R A SVIWE+ EI Y +++I+S LSY AQ +D +
Sbjct: 538 SADLCSLLGAVDRYAVSVIWEMDCSTYEIRRVWYGRTIIRSSYKLSYEVAQQLLDGD--L 595
Query: 248 DPLTTD 253
+PL+T+
Sbjct: 596 EPLSTE 601
Score = 495 (179.3 bits), Expect = 3.1e-97, Sum P(2) = 3.1e-97
Identities = 113/287 (39%), Positives = 168/287 (58%)
Query: 240 RMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQ 299
+ D +RL L + M +A R RR GAL L EV+ Q+ E H D+ Q
Sbjct: 608 KQDPARLQQLLWA-VGKMTEVAHATRMRRNMSGALELEGVEVRVQLG-EKHSIDDLVPKQ 665
Query: 300 IREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDV 359
+ ++ + E M+ AN VA++I +P +LLR HP P +E + L A A G ++D
Sbjct: 666 PLQVHETIAECMILANHWVAKKIWESYPQHALLRLHPPPRQEFFQELKECAKARGFSIDT 725
Query: 360 SSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYT 418
S+KALADSLD+A DP N+L+R++AT+ M+ A YF +G T EF+HYGLA YT
Sbjct: 726 RSNKALADSLDQAHDPSDPLVNQLLRMMATQAMSNARYFSTGSYTEDEFYHYGLALEKYT 785
Query: 419 HFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVE 478
HFTSPIRRYAD+VVHRLL A++ + ++ L + ++N R+R AQ + S E
Sbjct: 786 HFTSPIRRYADIVVHRLLLAAVNKGPKDHLLGNK-DLEELCRHINARNRAAQQCQKQSTE 844
Query: 479 LHTLIYFRKRPTDTEARIVK------IRSNGFIVFVPKFGIEGPVYL 519
L ++F+ + D++ R + IR+NG ++F+P++GI+G YL
Sbjct: 845 LFQCMFFKDKDPDSDQRCISDAVIYGIRTNGVLLFIPRYGIKGAAYL 891
Score = 37 (18.1 bits), Expect = 5.6e-49, Sum P(2) = 5.6e-49
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 445 LPSVFQDRPQL--TSIADNLNYRHRNAQMASRGSVEL 479
LPS PQL T + + AQ+A G+ EL
Sbjct: 971 LPSA--SNPQLLRTELVKEVTRTAVEAQLAVEGAAEL 1005
>UNIPROTKB|F1SJJ9 [details] [associations]
symbol:DIS3L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
EMBL:CU062652 Ensembl:ENSSSCT00000005453 Uniprot:F1SJJ9
Length = 1057
Score = 513 (185.6 bits), Expect = 7.8e-96, Sum P(2) = 7.8e-96
Identities = 119/290 (41%), Positives = 169/290 (58%)
Query: 242 DDSRL--MDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQ 299
D SR ++ L +R + +A+ +R +R GAL L EV+ Q+D E + D+ Q
Sbjct: 618 DKSRQAKLEELVWAIRKLTDIARHIRAKRDLCGALELEGVEVRIQLD-EKKNIHDLIPKQ 676
Query: 300 IREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDV 359
E ++ V E M+ AN VA++I FP +LLR+HP P +E L A A G +D
Sbjct: 677 PLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDT 736
Query: 360 SSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYT 418
S+K LADSLD A +DP NKL+R +AT+ M+ A+YF +G EFHHYGLA YT
Sbjct: 737 RSNKTLADSLDNANDPNDPIVNKLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYT 796
Query: 419 HFTSPIRRYADVVVHRLLSASLGIYKLPSVFQD---RPQLTSIADNLNYRHRNAQMASRG 475
HFTSPIRRY+D++VHRLL ++ K + ++ L + ++N R+R AQ +
Sbjct: 797 HFTSPIRRYSDIIVHRLLMEAISKDKKMEIKENLFSNKDLEELCKHINNRNRAAQHCQKQ 856
Query: 476 SVELHTLIYFRKRPTDTEAR------IVKIRSNGFIVFVPKFGIEGPVYL 519
S EL +YF+ + DTE R I IR+NG +VF+P+FGI+G YL
Sbjct: 857 STELFQCMYFKDKDPDTEERCISDGVIYSIRTNGVLVFIPRFGIKGAAYL 906
Score = 479 (173.7 bits), Expect = 7.8e-96, Sum P(2) = 7.8e-96
Identities = 109/258 (42%), Positives = 151/258 (58%)
Query: 19 DRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESEMVLID 78
D P+ + + R+ D R +V +DSW+ S YP GH+VRV+G IGD + E +L++
Sbjct: 374 DYTCPQKKKKEREREREKDFREVVRIDSWESTSMYPNGHFVRVLGRIGDLEGEIATILVE 433
Query: 79 NDIDARPFSTQVLACLP---PL-PWSVSSEDLANPIRLDLRDLR-VFSVDPPGCKDIDDA 133
N I PFS + +P P PW VSSE+ R DLR VFS+DP GC+D+DD
Sbjct: 434 NSISVVPFSEAQMCEMPVNTPENPWKVSSEEERK--RKDLRKTHLVFSIDPRGCEDVDDT 491
Query: 134 LHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDIC 193
L AL +GN E+GVHIADVT+FV P + +D EA R T+ YL +RR DMLP L+ D+C
Sbjct: 492 LSVRALDNGNLELGVHIADVTHFVAPHSYIDIEARSRATTYYLADRRYDMLPSILSADVC 551
Query: 194 SLRADVERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTT 252
SL V+R A SV+WEL + EI + Y +++I+S L Y AQ +D + +
Sbjct: 552 SLLGGVDRYAVSVMWELDKTSHEIKNVWYGRTIIRSAYKLFYEAAQELLDGNF---SIVD 608
Query: 253 DLRNMNSLAKKMRQRRIE 270
D+ L K RQ ++E
Sbjct: 609 DIPEFRDLDDKSRQAKLE 626
Score = 39 (18.8 bits), Expect = 1.8e-49, Sum P(2) = 1.8e-49
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 213 EAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDP-LTTDL 254
EA I S RY + ++ + +EA R+ + D L +D+
Sbjct: 235 EAGIKSGRYIQGILNVNKHRAQIEAFVRLQGASTKDSGLVSDI 277
Score = 37 (18.1 bits), Expect = 1.4e-45, Sum P(2) = 1.4e-45
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 300 IREANQMVEEFMLAANVSV 318
++E + VEE LA V V
Sbjct: 1000 VKEVTRSVEEAQLAQEVKV 1018
>UNIPROTKB|I3LEH1 [details] [associations]
symbol:DIS3L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019899 "enzyme binding" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005813 "centrosome" evidence=IEA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0005886 GO:GO:0005813
GO:GO:0003723 GO:GO:0016075 GO:GO:0000175 GO:GO:0000177
InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:CU062652
Ensembl:ENSSSCT00000024119 Uniprot:I3LEH1
Length = 1059
Score = 513 (185.6 bits), Expect = 1.3e-95, Sum P(2) = 1.3e-95
Identities = 119/290 (41%), Positives = 169/290 (58%)
Query: 242 DDSRL--MDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQ 299
D SR ++ L +R + +A+ +R +R GAL L EV+ Q+D E + D+ Q
Sbjct: 620 DKSRQAKLEELVWAIRKLTDIARHIRAKRDLCGALELEGVEVRIQLD-EKKNIHDLIPKQ 678
Query: 300 IREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDV 359
E ++ V E M+ AN VA++I FP +LLR+HP P +E L A A G +D
Sbjct: 679 PLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDT 738
Query: 360 SSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYT 418
S+K LADSLD A +DP NKL+R +AT+ M+ A+YF +G EFHHYGLA YT
Sbjct: 739 RSNKTLADSLDNANDPNDPIVNKLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYT 798
Query: 419 HFTSPIRRYADVVVHRLLSASLGIYKLPSVFQD---RPQLTSIADNLNYRHRNAQMASRG 475
HFTSPIRRY+D++VHRLL ++ K + ++ L + ++N R+R AQ +
Sbjct: 799 HFTSPIRRYSDIIVHRLLMEAISKDKKMEIKENLFSNKDLEELCKHINNRNRAAQHCQKQ 858
Query: 476 SVELHTLIYFRKRPTDTEAR------IVKIRSNGFIVFVPKFGIEGPVYL 519
S EL +YF+ + DTE R I IR+NG +VF+P+FGI+G YL
Sbjct: 859 STELFQCMYFKDKDPDTEERCISDGVIYSIRTNGVLVFIPRFGIKGAAYL 908
Score = 477 (173.0 bits), Expect = 1.3e-95, Sum P(2) = 1.3e-95
Identities = 107/242 (44%), Positives = 145/242 (59%)
Query: 35 LLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESEMVLIDNDIDARPFSTQVLACL 94
L D R +V +DSW+ S YP GH+VRV+G IGD + E +L++N I PFS + +
Sbjct: 392 LRDFREVVRIDSWESTSMYPNGHFVRVLGRIGDLEGEIATILVENSISVVPFSEAQMCEM 451
Query: 95 P---PL-PWSVSSEDLANPIRLDLRDLR-VFSVDPPGCKDIDDALHCTALSSGNFEVGVH 149
P P PW VSSE+ R DLR VFS+DP GC+D+DD L AL +GN E+GVH
Sbjct: 452 PVNTPENPWKVSSEEERK--RKDLRKTHLVFSIDPRGCEDVDDTLSVRALDNGNLELGVH 509
Query: 150 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 209
IADVT+FV P + +D EA R T+ YL +RR DMLP L+ D+CSL V+R A SV+WE
Sbjct: 510 IADVTHFVAPHSYIDIEARSRATTYYLADRRYDMLPSILSADVCSLLGGVDRYAVSVMWE 569
Query: 210 LTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRR 268
L + EI + Y +++I+S L Y AQ +D + + D+ L K RQ +
Sbjct: 570 LDKTSHEIKNVWYGRTIIRSAYKLFYEAAQELLDGNF---SIVDDIPEFRDLDDKSRQAK 626
Query: 269 IE 270
+E
Sbjct: 627 LE 628
Score = 39 (18.8 bits), Expect = 1.8e-49, Sum P(2) = 1.8e-49
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 213 EAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDP-LTTDL 254
EA I S RY + ++ + +EA R+ + D L +D+
Sbjct: 235 EAGIKSGRYIQGILNVNKHRAQIEAFVRLQGASTKDSGLVSDI 277
Score = 37 (18.1 bits), Expect = 2.3e-45, Sum P(2) = 2.3e-45
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 300 IREANQMVEEFMLAANVSV 318
++E + VEE LA V V
Sbjct: 1002 VKEVTRSVEEAQLAQEVKV 1020
>DICTYBASE|DDB_G0278757 [details] [associations]
symbol:DDB_G0278757 "DIS3-like exonuclease 2"
species:44689 "Dictyostelium discoideum" [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
dictyBase:DDB_G0278757 GO:GO:0003723 EMBL:AAFI02000024
GO:GO:0004540 eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
RefSeq:XP_641919.1 ProteinModelPortal:Q54XT5
EnsemblProtists:DDB0206173 GeneID:8621677 KEGG:ddi:DDB_G0278757
InParanoid:Q54XT5 OMA:EICTIDP ProtClustDB:CLSZ2447996
Uniprot:Q54XT5
Length = 1343
Score = 493 (178.6 bits), Expect = 2.8e-91, Sum P(2) = 2.8e-91
Identities = 115/280 (41%), Positives = 161/280 (57%)
Query: 15 FVPKDRRIPKIRIQTRQLGNLLD-----KRIIVAV--DSWDCQSRYPFGHYVRVIGEIGD 67
F+P D +PK I + K+ +V+V W S P GHY + GE G
Sbjct: 725 FIPMDTTLPKCCIFKESIPQYKSNPEKYKKSLVSVGYSGWKETSLLPIGHYKSLFGECGK 784
Query: 68 RDTESEMVLIDNDIDARPFSTQVLACLPPLP----WSVSSEDLANPIRLDLRDLRVFSVD 123
+ E+ +L + ++ PFS +V+ CLP + W S +DL R DLR+L + ++D
Sbjct: 785 IEPETYALLSEFGVETDPFSKEVMECLPKIDQSKLWLPSEQDLKG--RRDLRNLEICTID 842
Query: 124 PPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDM 183
P KD+DDALHC L GNFEVGVHIADV++FV P T LD A ++ T+VYLV++ I M
Sbjct: 843 PDTAKDLDDALHCIELEDGNFEVGVHIADVSHFVKPDTALDKCAQRKATTVYLVQKAIPM 902
Query: 184 LPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDD 243
LP L+E++CSL VERLAFSVIW+L+P EI+ + +SVIKS + L+Y AQA +DD
Sbjct: 903 LPSLLSEELCSLNMGVERLAFSVIWKLSPTGEILDEWFGRSVIKSFSRLTYAIAQALIDD 962
Query: 244 ---SRLMDPLTTDLRNMNSLAKKMRQR--RIERGALTLAS 278
+ D + D + L Q R+++G L L S
Sbjct: 963 KITNAWEDWIPAD-KMRKDLGPNTAQHIARVKKGVLGLRS 1001
Score = 461 (167.3 bits), Expect = 2.8e-91, Sum P(2) = 2.8e-91
Identities = 106/277 (38%), Positives = 157/277 (56%)
Query: 257 MNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANV 316
+ S+AK MR RI GA T+ +++ F +D + +P+ +Y I E+N +VEE+ML AN+
Sbjct: 999 LRSIAKHMRSNRIANGAFTIHPSKLAFALD-DKGNPVSTKIYPIYESNNLVEEYMLLANM 1057
Query: 317 SVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDD 376
VAE+I + FP SLLRRHPSP + LE + + G +D SSS +S+ +
Sbjct: 1058 RVAERIGKFFPSNSLLRRHPSPNENKLESFISFCSKHGFEIDSSSSLTFGESIKKLKDTC 1117
Query: 377 PYFNKL--IRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHR 434
N L I++L+ R M A YFCS + ++ HY L AP YTHFTSPIRRYAD++VHR
Sbjct: 1118 TDINILMAIQLLSIRSMKLAEYFCSNNEEEEDWRHYALNAPFYTHFTSPIRRYADIIVHR 1177
Query: 435 LLSASLGIYKLPSVFQDR-PQ---LTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPT 490
LL S+ + K ++ P +T+I N N + NA+ A S ++ + PT
Sbjct: 1178 LLDLSIQVEKNNRNHTEQLPSSESITAICKNCNEKKLNARKAQERSDKVFLCVLLENHPT 1237
Query: 491 DTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGS 527
TEA + ++ + VP+FG E VYL ++G+
Sbjct: 1238 TTEAVALNTGASYIVCIVPQFGSEQKVYLDDLQKEGT 1274
>DICTYBASE|DDB_G0268186 [details] [associations]
symbol:DDB_G0268186 species:44689 "Dictyostelium
discoideum" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 dictyBase:DDB_G0268186 EMBL:AAFI02000003
GO:GO:0003723 GO:GO:0004540 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 RefSeq:XP_647622.1 EnsemblProtists:DDB0189843
GeneID:8616436 KEGG:ddi:DDB_G0268186 InParanoid:Q55FB1 OMA:YMILANS
Uniprot:Q55FB1
Length = 1504
Score = 499 (180.7 bits), Expect = 1.6e-89, Sum P(2) = 1.6e-89
Identities = 109/272 (40%), Positives = 160/272 (58%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
+ VP D RIP IR+ T+ L KR+++ +DSWD S YP GHYV IGE G +TE
Sbjct: 610 MIVPFDYRIPLIRVPTKNPSQYLGKRLVIRMDSWDLNSNYPMGHYVSSIGESGSLETELS 669
Query: 74 MVLIDNDIDARPFSTQVLACLPPL----PWSVSSEDLANPIRLDLRDLRVFSVDPPGCKD 129
+++++DI + + +L CLP PW + E+ A R L + + S+DP G KD
Sbjct: 670 ALMVEHDISLKQWPQSILKCLPESSDQSPWQIPPEEKA--YRRQLTNHHIMSIDPLGSKD 727
Query: 130 IDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLT 189
IDDA+ ++ E+GVHIADV++FV G+PLD EA +RGT++YL +RR DMLP L+
Sbjct: 728 IDDAISIGYPTNDIIEIGVHIADVSHFVKEGSPLDLEAKRRGTTIYLPDRRFDMLPAVLS 787
Query: 190 EDICSLRADVERLAFSVIWEL--TPEA--EIISTRYTKSVIKSCAALSYVEAQARMDDSR 245
ED+CSLR + R A SV+W+ P EI+ T + +++I S A L Y AQ +D +
Sbjct: 788 EDVCSLRGGLPRCAMSVVWQFKRNPNKTYEIVDTWFGRTIIHSSAELHYQLAQDIID-GK 846
Query: 246 LMDPLTTDLRNMNSLAKKMRQRRIERGALTLA 277
++D D A+ + RI G +T++
Sbjct: 847 IVDGKDKDSDVTGGGARAGYKHRIFNG-ITIS 877
Score = 440 (159.9 bits), Expect = 1.6e-89, Sum P(2) = 1.6e-89
Identities = 104/291 (35%), Positives = 164/291 (56%)
Query: 253 DLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDT-ETHDPLDIGMYQIREANQMVEEFM 311
DL + S+ +++++ R++ GAL L S EV+F+ ++ ++ P I + E + +V E+M
Sbjct: 882 DLLELCSIFRQLKKERVKNGALELESIEVRFKFNSKDSSQPKKIILKNDLEIHHLVAEYM 941
Query: 312 LAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDR 371
+ AN VA +I FP +LLRRHP P + + + + G L ++K L +SL
Sbjct: 942 ILANSHVATKIHSVFPSSALLRRHPKPNQIDFKSIKSYFSYCGFQLLTKTNKQLQESLAS 1001
Query: 372 AV--GDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYAD 429
AV G D Y NK++++ +++AVYF +G + EF+HYGLA YTHFTSPIRRY+D
Sbjct: 1002 AVDSGGDVYVNKILKLKIVNVVSEAVYFSTGSVNVSEFYHYGLAIDKYTHFTSPIRRYSD 1061
Query: 430 VVVHRLLSASL----GIYK-LPSVFQ----------DRPQLTSIADNLNYRHRNAQMASR 474
++VHR L SL G + S+ D +T + D+LN R+R ++ R
Sbjct: 1062 IIVHRQLWNSLNQSNGKFGGKSSIIDNNNNNDQSSYDNFSITQLTDHLNIRNRASKTVQR 1121
Query: 475 GSVELHTLIYFRKRPTDTEARIVK-IRSNGFIVFVPKFGIEGPVYLTPRGQ 524
+ EL +YF+ P + I+ IRSNGF+ F+P+FG+ V+L Q
Sbjct: 1122 DATELFQSLYFKLFPKENVLAIITDIRSNGFVCFIPEFGLRSRVFLKKDSQ 1172
>GENEDB_PFALCIPARUM|MAL13P1.289 [details] [associations]
symbol:MAL13P1.289 "mitotic control protein
dis3 homologue, putative" species:5833 "Plasmodium falciparum"
[GO:0004527 "exonuclease activity" evidence=ISS] [GO:0000178
"exosome (RNase complex)" evidence=ISS] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0004527
GO:GO:0000178 GO:GO:0004540 EMBL:AL844509 InterPro:IPR022966
PROSITE:PS01175 KO:K12585 RefSeq:XP_001350300.2
EnsemblProtists:MAL13P1.289:mRNA GeneID:813851 KEGG:pfa:MAL13P1.289
EuPathDB:PlasmoDB:PF3D7_1359300 HOGENOM:HOG000281701
ProtClustDB:CLSZ2515355 Uniprot:Q8IDB6
Length = 1073
Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
Identities = 207/561 (36%), Positives = 315/561 (56%)
Query: 19 DRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESEMVLID 78
+ +IP I I+ + L +KR+IV +D+WD SR P G + V+G D +TE++++ +
Sbjct: 505 NNKIPYIMIKAQLEDELRNKRVIVTIDNWDIYSRNPLGRCISVLGNCDDIETETKLIYNE 564
Query: 79 NDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDALHCTA 138
+I R FS V CLPP W + E+ R D R++ FS+DPPGC+DIDDAL
Sbjct: 565 YNISTREFSENVYKCLPPNNWVIPDEEYEK--RNDFRNVLTFSIDPPGCQDIDDALSVEF 622
Query: 139 LSS-GNFE------VGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTED 191
L GN E +GVHIADV+ FV +P+D EASKR T+VYL+ +R+DMLPK LT +
Sbjct: 623 LQQDGNIEKNYIYRIGVHIADVSYFVKQNSPIDLEASKRCTTVYLINQRVDMLPKLLTTN 682
Query: 192 ICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLT 251
+CSL ERL +S I+ + +II K +IKS + SY +AQ +DD
Sbjct: 683 LCSLVEGEERLTYSCIFCFNKDFDIIDISVKKCIIKSNKSFSYEQAQNVIDDKNDQSDTA 742
Query: 252 TDLRNMNSLAKKMRQRRIERGALTL-ASAEVKFQIDTETHDPL-DIGMYQIREANQMVEE 309
LR +N +AK ++Q+ GAL L + EV F+ + ++ Y E N+++E
Sbjct: 743 KSLRLLNKIAKHLKQKWSNDGALELRGNTEVLFEFEANDFSKAKNLKPYVCYETNKLIEA 802
Query: 310 FMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPL---LRTAAAVGLNLDVSSSKALA 366
FML AN SVA I + F S+LRRHP P E L+ L L+T + ++SK L+
Sbjct: 803 FMLLANRSVARIIFQNFKAASVLRRHPPPKHEYLKELNDYLKTIQV--FDFKYNTSKDLS 860
Query: 367 DSLDRA-VGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEF-HHYGLAAPLYTHFTSPI 424
S++ + +D + +++++ T+CM +AV+ ++ + HYGLAA +YT FTSPI
Sbjct: 861 HSINNINLKNDNILSNILKVMVTKCMNEAVFISGYNVHNNDMLRHYGLAADIYTFFTSPI 920
Query: 425 RRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIY 484
RRYAD++VHR+L+ I +L + D L LN ++RNA+ ASR SV+ + +Y
Sbjct: 921 RRYADIMVHRILNHIYQIEELDKKYLDIIYLNKQVALLNDKYRNARFASRASVDFFSYLY 980
Query: 485 FRKRPTD-TEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMD 543
+K T A I ++ NG +F+ + EG YL K + DE++++ +K+D
Sbjct: 981 IKKIGNQITNAVITNLKKNGIQIFLIDYFTEGICYL-----KRKDGFLFDEKKKRFIKID 1035
Query: 544 ---GNLSY-SVLQTVNIHMEV 560
L + S + +HM+V
Sbjct: 1036 KYKNELFHLSFYDKIQVHMQV 1056
>UNIPROTKB|Q8IDB6 [details] [associations]
symbol:MAL13P1.289 "Mitotic control protein dis3 homologue,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000178
"exosome (RNase complex)" evidence=ISS] [GO:0004527 "exonuclease
activity" evidence=ISS] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0003723 GO:GO:0004527 GO:GO:0000178
GO:GO:0004540 EMBL:AL844509 InterPro:IPR022966 PROSITE:PS01175
KO:K12585 RefSeq:XP_001350300.2 EnsemblProtists:MAL13P1.289:mRNA
GeneID:813851 KEGG:pfa:MAL13P1.289 EuPathDB:PlasmoDB:PF3D7_1359300
HOGENOM:HOG000281701 ProtClustDB:CLSZ2515355 Uniprot:Q8IDB6
Length = 1073
Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
Identities = 207/561 (36%), Positives = 315/561 (56%)
Query: 19 DRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESEMVLID 78
+ +IP I I+ + L +KR+IV +D+WD SR P G + V+G D +TE++++ +
Sbjct: 505 NNKIPYIMIKAQLEDELRNKRVIVTIDNWDIYSRNPLGRCISVLGNCDDIETETKLIYNE 564
Query: 79 NDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDALHCTA 138
+I R FS V CLPP W + E+ R D R++ FS+DPPGC+DIDDAL
Sbjct: 565 YNISTREFSENVYKCLPPNNWVIPDEEYEK--RNDFRNVLTFSIDPPGCQDIDDALSVEF 622
Query: 139 LSS-GNFE------VGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTED 191
L GN E +GVHIADV+ FV +P+D EASKR T+VYL+ +R+DMLPK LT +
Sbjct: 623 LQQDGNIEKNYIYRIGVHIADVSYFVKQNSPIDLEASKRCTTVYLINQRVDMLPKLLTTN 682
Query: 192 ICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLT 251
+CSL ERL +S I+ + +II K +IKS + SY +AQ +DD
Sbjct: 683 LCSLVEGEERLTYSCIFCFNKDFDIIDISVKKCIIKSNKSFSYEQAQNVIDDKNDQSDTA 742
Query: 252 TDLRNMNSLAKKMRQRRIERGALTL-ASAEVKFQIDTETHDPL-DIGMYQIREANQMVEE 309
LR +N +AK ++Q+ GAL L + EV F+ + ++ Y E N+++E
Sbjct: 743 KSLRLLNKIAKHLKQKWSNDGALELRGNTEVLFEFEANDFSKAKNLKPYVCYETNKLIEA 802
Query: 310 FMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPL---LRTAAAVGLNLDVSSSKALA 366
FML AN SVA I + F S+LRRHP P E L+ L L+T + ++SK L+
Sbjct: 803 FMLLANRSVARIIFQNFKAASVLRRHPPPKHEYLKELNDYLKTIQV--FDFKYNTSKDLS 860
Query: 367 DSLDRA-VGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEF-HHYGLAAPLYTHFTSPI 424
S++ + +D + +++++ T+CM +AV+ ++ + HYGLAA +YT FTSPI
Sbjct: 861 HSINNINLKNDNILSNILKVMVTKCMNEAVFISGYNVHNNDMLRHYGLAADIYTFFTSPI 920
Query: 425 RRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIY 484
RRYAD++VHR+L+ I +L + D L LN ++RNA+ ASR SV+ + +Y
Sbjct: 921 RRYADIMVHRILNHIYQIEELDKKYLDIIYLNKQVALLNDKYRNARFASRASVDFFSYLY 980
Query: 485 FRKRPTD-TEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMD 543
+K T A I ++ NG +F+ + EG YL K + DE++++ +K+D
Sbjct: 981 IKKIGNQITNAVITNLKKNGIQIFLIDYFTEGICYL-----KRKDGFLFDEKKKRFIKID 1035
Query: 544 ---GNLSY-SVLQTVNIHMEV 560
L + S + +HM+V
Sbjct: 1036 KYKNELFHLSFYDKIQVHMQV 1056
>POMBASE|SPAC2C4.07c [details] [associations]
symbol:SPAC2C4.07c "ribonuclease II (RNB) family
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISM] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006401 "RNA catabolic process" evidence=ISM]
[GO:0033554 "cellular response to stress" evidence=IEP]
InterPro:IPR001900 Pfam:PF00773 PROSITE:PS50126 SMART:SM00955
PomBase:SPAC2C4.07c GO:GO:0005829 EMBL:CU329670 GO:GO:0033554
GO:GO:0003723 GO:GO:0006401 GO:GO:0004527 GO:GO:0004540
eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175 EMBL:AB027825
PIR:T38518 RefSeq:NP_594510.1 ProteinModelPortal:O14040
STRING:O14040 EnsemblFungi:SPAC2C4.07c.1 GeneID:2542643
KEGG:spo:SPAC2C4.07c OMA:WIISHEE OrthoDB:EOG4MGWGN NextBio:20803692
Uniprot:O14040
Length = 927
Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
Identities = 194/502 (38%), Positives = 285/502 (56%)
Query: 11 AHALFVPKDRRIPKIRIQTRQLG---------NLL---DKRIIVAVDSWDCQSRYPFGHY 58
++A+F+PKD+R+P I I L N+L D+ V + W SRYP G
Sbjct: 331 SYAIFIPKDKRLPFITIHKNDLSDLSGENWIENILKHHDQLFSVEITRWSIYSRYPMGVL 390
Query: 59 VRVIGEIGDRDTESEMVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLR 118
+G I D + + +L++N I + PFS +VL CLPP W +S E++ R DLR+
Sbjct: 391 GEKLGNITDVEAYTNALLLENGISSSPFSDEVLNCLPPDDWIISHEEIKK--RRDLRNEL 448
Query: 119 VFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVE 178
+ ++DP +D+DDA+ C AL +G +EVGVHIADVT+FV P + LD EA+ R T+VYLV+
Sbjct: 449 IITIDPETARDLDDAVSCRALDNGTYEVGVHIADVTHFVKPDSALDKEAASRATTVYLVQ 508
Query: 179 RRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTR-YTKSVIKSCAALSYVEA 237
+ I MLP L E +CSL +VERLAFSV W+L + I R + K+VIK+CA L+Y EA
Sbjct: 509 KAIPMLPPLLCERLCSLNPNVERLAFSVFWKLDSNGKEIGKRWFGKTVIKTCARLAYSEA 568
Query: 238 QARMD----DSRLMDPL---------TTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQ 284
Q ++ D + P+ T + + +++K+R+ R +GA+ + S E+KFQ
Sbjct: 569 QGVIEGKSWDDAVGKPIGGTHTPKDVETSILTLCEISRKLRKDRFAKGAVEINSTELKFQ 628
Query: 285 IDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLE 344
+D E P +Y+ +AN ++EEFML AN SVAE I + F SLLRRH SP ++ +
Sbjct: 629 LD-EYGMPNKCEVYEQTDANHLIEEFMLLANRSVAEHISKNFSNNSLLRRHASPKEKQIN 687
Query: 345 PLLRTAAAVGLNLDVSSSKALADSLDRAVGD-DPYFNKLIRILATRCMTQAVYFCSGDL- 402
++ + D SSS A S+ R + +L +A R + +A YFC+GD
Sbjct: 688 EFCHFLKSMNFDFDASSSAAFNASMVRLRSTFNEELVELFENMAVRSLNRAEYFCTGDFG 747
Query: 403 TPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNL 462
++HHY L+ YTHFTSPIRRY D++VHRLL SL K S D+ + +A +
Sbjct: 748 EKTDWHHYALSFNHYTHFTSPIRRYPDIIVHRLLERSL---KNTSPGIDKKNCSLVAAHC 804
Query: 463 NYRHRNAQMASRGSVELHTLIY 484
N + + S +L +Y
Sbjct: 805 NEKKEKSTTVQEDSQQLFLSVY 826
Score = 381 (139.2 bits), Expect = 2.2e-32, P = 2.2e-32
Identities = 99/301 (32%), Positives = 153/301 (50%)
Query: 252 TDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFM 311
T + + +++K+R+ R +GA+ + S E+KFQ+D E P +Y+ +AN ++EEFM
Sbjct: 596 TSILTLCEISRKLRKDRFAKGAVEINSTELKFQLD-EYGMPNKCEVYEQTDANHLIEEFM 654
Query: 312 LAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDR 371
L AN SVAE I + F SLLRRH SP ++ + ++ + D SSS A S+ R
Sbjct: 655 LLANRSVAEHISKNFSNNSLLRRHASPKEKQINEFCHFLKSMNFDFDASSSAAFNASMVR 714
Query: 372 AVGD-DPYFNKLIRILATRCMTQAVYFCSGDL-TPPEFHHYGLAAPLYTHFTSPIRRYAD 429
+ +L +A R + +A YFC+GD ++HHY L+ YTHFTSPIRRY D
Sbjct: 715 LRSTFNEELVELFENMAVRSLNRAEYFCTGDFGEKTDWHHYALSFNHYTHFTSPIRRYPD 774
Query: 430 VVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFR--- 486
++VHRLL SL K S D+ + +A + N + + S +L +Y
Sbjct: 775 IIVHRLLERSL---KNTSPGIDKKNCSLVAAHCNEKKEKSTTVQEDSQQLFLSVYIAEYC 831
Query: 487 ----KRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKM 542
K+ +A +I N V++ ++GI V L+ + S D+ KI
Sbjct: 832 KKHDKKSMPVQAFATRISGNSIDVYISEYGISNRVDLSSDDRIKSFIVAPDDSSVKITLF 891
Query: 543 D 543
D
Sbjct: 892 D 892
>ZFIN|ZDB-GENE-070705-171 [details] [associations]
symbol:si:ch211-273k1.4 "si:ch211-273k1.4"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
ZFIN:ZDB-GENE-070705-171 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
EMBL:BX001029 IPI:IPI00499069 Ensembl:ENSDART00000083272
Uniprot:E7F350
Length = 995
Score = 707 (253.9 bits), Expect = 9.6e-70, P = 9.6e-70
Identities = 155/402 (38%), Positives = 237/402 (58%)
Query: 13 ALFVPKDRRIPKIRIQ--------TRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGE 64
A+F P D R+P++ + T + G+ + I + W S + G + +G+
Sbjct: 396 AMFSPVDHRVPRVNVPLADCPADFTSRPGDYENTLFICRITQWPADSNFAEGRLAKTLGQ 455
Query: 65 IGDRDTESEMVLIDNDIDARPFSTQVLACLPP-LPWSVSSEDLANPIRLDLRDLRVFSVD 123
G+ + E+E +L + +D F+ +VL CLP LPWS+ + +L+ R DLR +F++D
Sbjct: 456 AGEIEPETEGILTEYGVDFSEFTEEVLNCLPQDLPWSIPAHELST--RRDLRKECIFTID 513
Query: 124 PPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDM 183
P +D+DDAL C LS GNFEVGVHIADV+ FV G LD+ A +R TSVYLV++ I M
Sbjct: 514 PATARDLDDALSCKQLSDGNFEVGVHIADVSYFVKEGNALDELAGQRATSVYLVQKVIPM 573
Query: 184 LPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMD- 242
LP+ L E++CSL +RL FSVIW+L+PE +I+S + ++VI SC LSY AQ+ +D
Sbjct: 574 LPRLLCEELCSLNPLTDRLTFSVIWKLSPEGKILSEWFGRTVICSCIKLSYDHAQSMIDA 633
Query: 243 DSRLMDP--------------LTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTE 288
+ P + + N++++AK++R +R E GAL L ++ F +D E
Sbjct: 634 PDKHFSPEELPACSPNHSIIEIQEAVLNLHNIAKQLRAQRFEGGALRLDQLKLSFTLDKE 693
Query: 289 THDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLR 348
+ P +YQ R++N++VEEFML AN++V QI R +P +LLRRHP P +M++ +
Sbjct: 694 SSMPQGCYVYQYRDSNKLVEEFMLLANMAVGHQIYRSYPELALLRRHPPPQTKMVDDMQE 753
Query: 349 TAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLIRILATRC 390
+GL++D SSS AL SL+ +GDD Y ++ C
Sbjct: 754 FFDQMGLDIDFSSSGALHRSLNENLGDDEYTAARKEVITHMC 795
Score = 484 (175.4 bits), Expect = 3.8e-45, P = 3.8e-45
Identities = 108/268 (40%), Positives = 163/268 (60%)
Query: 256 NMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAAN 315
N++++AK++R +R E GAL L ++ F +D E+ P +YQ R++N++VEEFML AN
Sbjct: 661 NLHNIAKQLRAQRFEGGALRLDQLKLSFTLDKESSMPQGCYVYQYRDSNKLVEEFMLLAN 720
Query: 316 VSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGD 375
++V QI R +P +LLRRHP P +M++ + +GL++D SSS AL SL+ +GD
Sbjct: 721 MAVGHQIYRSYPELALLRRHPPPQTKMVDDMQEFFDQMGLDIDFSSSGALHRSLNENLGD 780
Query: 376 DPYF---NKLIRILATRCMTQAVYFCSGDLTPPE-FHHYGLAAPLYTHFTSPIRRYADVV 431
D Y ++I + +R M AVYFC+G L + F HY L PLYTHFTSPIRRYADV+
Sbjct: 781 DEYTAARKEVITHMCSRPMQMAVYFCAGALKDEKLFRHYALNVPLYTHFTSPIRRYADVI 840
Query: 432 VHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRK-RPT 490
VHRLL ASL SV + ++ A + N R ++ S EL ++ ++ P
Sbjct: 841 VHRLLGASLNCGPRLSVSGE--EVHQQASHCNDRKTASKRVQELSSELFFAVFVKECGPL 898
Query: 491 DTEARIVKIRSNGFIVFVPKFGIEGPVY 518
D+EA ++ + F V V ++G++ +Y
Sbjct: 899 DSEAMVMGVLDQSFDVLVLRYGVQKRIY 926
>UNIPROTKB|Q8IYB7 [details] [associations]
symbol:DIS3L2 "DIS3-like exonuclease 2" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0051306 "mitotic sister
chromatid separation" evidence=IMP] [GO:0008285 "negative
regulation of cell proliferation" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005737 GO:GO:0008285 GO:GO:0051301
GO:GO:0003723 GO:GO:0004527 GO:GO:0004540 Orphanet:654
GO:GO:0051306 eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
EMBL:AK094293 EMBL:AL834174 EMBL:BX648325 EMBL:AF443854
EMBL:AC019130 EMBL:AC068134 EMBL:AC093374 EMBL:AC138658
EMBL:BC026166 EMBL:BC036113 IPI:IPI00167753 IPI:IPI00217752
IPI:IPI00385160 IPI:IPI00465384 IPI:IPI00880048
RefSeq:NP_001244210.1 RefSeq:NP_001244211.1 RefSeq:NP_689596.4
UniGene:Hs.732236 ProteinModelPortal:Q8IYB7 IntAct:Q8IYB7
MINT:MINT-1386910 STRING:Q8IYB7 PhosphoSite:Q8IYB7 DMDM:296439471
PaxDb:Q8IYB7 PRIDE:Q8IYB7 DNASU:129563 Ensembl:ENST00000273009
Ensembl:ENST00000325385 Ensembl:ENST00000360410
Ensembl:ENST00000390005 Ensembl:ENST00000409307
Ensembl:ENST00000409401 Ensembl:ENST00000433430
Ensembl:ENST00000445090 GeneID:129563 KEGG:hsa:129563
UCSC:uc010fxz.3 CTD:129563 GeneCards:GC02P232825 H-InvDB:HIX0002923
HGNC:HGNC:28648 HPA:HPA035797 MIM:267000 MIM:614184
neXtProt:NX_Q8IYB7 Orphanet:2849 PharmGKB:PA162383714
HOVERGEN:HBG107810 InParanoid:Q8IYB7 OMA:HIYEYRE ChiTaRS:DIS3L2
GenomeRNAi:129563 NextBio:82609 ArrayExpress:Q8IYB7 Bgee:Q8IYB7
CleanEx:HS_DIS3L2 Genevestigator:Q8IYB7 Uniprot:Q8IYB7
Length = 885
Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 176/504 (34%), Positives = 274/504 (54%)
Query: 12 HALFVPKDRRIPKIRIQTRQLGNLLDKR--------IIVAVDSWDCQSRYPFGHYVRVIG 63
+ALF P D R+P+I + + R I + W + G + +G
Sbjct: 265 YALFSPSDHRVPRIYVPLKDCPQDFVARPKDYANTLFICRIVDWKEDCNFALGQLAKSLG 324
Query: 64 EIGDRDTESEMVLIDNDIDARPFSTQVLACLPP-LPWSVSSEDLANPIRLDLRDLRVFSV 122
+ G+ + E+E +L + +D FS++VL CLP LPW++ E+ + R DLR +F++
Sbjct: 325 QAGEIEPETEGILTEYGVDFSDFSSEVLECLPQGLPWTIPPEEFSK--RRDLRKDCIFTI 382
Query: 123 DPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRID 182
DP +D+DDAL C L+ GNF+VGVHIADV+ FV G+ LD A++R TSVYLV++ +
Sbjct: 383 DPSTARDLDDALSCKPLADGNFKVGVHIADVSYFVPEGSDLDKVAAERATSVYLVQKVVP 442
Query: 183 MLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMD 242
MLP+ L E++CSL ++L FSVIW LTPE +I+ + +++I+SC LSY AQ+ ++
Sbjct: 443 MLPRLLCEELCSLNPMSDKLTFSVIWTLTPEGKILDEWFGRTIIRSCTKLSYEHAQSMIE 502
Query: 243 D------SRLMDPLTTD---------LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDT 287
++ + P++ + + N++ +AK++RQ+R GAL L ++ F +D
Sbjct: 503 SPTEKIPAKELPPISPEHSSEEVHQAVLNLHGIAKQLRQQRFVDGALRLDQLKLAFTLDH 562
Query: 288 ETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLL 347
ET P +Y+ RE+N++VEEFML AN++VA +I R FP +LLRRHP P ML L+
Sbjct: 563 ETGLPQGCHIYEYRESNKLVEEFMLLANMAVAHKIHRAFPEQALLRRHPPPQTRMLSDLV 622
Query: 348 RTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEF 407
+GL +D SS+ AL SL + GDD Y L R +T CS + +
Sbjct: 623 EFCDQMGLPVDFSSAGALNKSLTQTFGDDKY--SLAR---KEVLTN---MCSRPMQMALY 674
Query: 408 HHYGLAA-PL-YTHFTSPIRRYADVVVHRLLSASLGIYKL-PSVFQDRPQLTSIADNLNY 464
GL P + H+ + Y A + +++L + R +L D L
Sbjct: 675 FCSGLLQDPAQFRHYALNVPLYTHFTSPIRRFADVLVHRLLAAALGYRERLDMAPDTLQK 734
Query: 465 R--HRN-AQMASRGSVELHTLIYF 485
+ H N +MAS+ EL T ++F
Sbjct: 735 QADHCNDRRMASKRVQELSTSLFF 758
Score = 491 (177.9 bits), Expect = 4.5e-46, P = 4.5e-46
Identities = 116/272 (42%), Positives = 162/272 (59%)
Query: 256 NMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAAN 315
N++ +AK++RQ+R GAL L ++ F +D ET P +Y+ RE+N++VEEFML AN
Sbjct: 531 NLHGIAKQLRQQRFVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRESNKLVEEFMLLAN 590
Query: 316 VSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGD 375
++VA +I R FP +LLRRHP P ML L+ +GL +D SS+ AL SL + GD
Sbjct: 591 MAVAHKIHRAFPEQALLRRHPPPQTRMLSDLVEFCDQMGLPVDFSSAGALNKSLTQTFGD 650
Query: 376 DPYFNKLIRILATRC---MTQAVYFCSGDLTPP-EFHHYGLAAPLYTHFTSPIRRYADVV 431
D Y +L C M A+YFCSG L P +F HY L PLYTHFTSPIRR+ADV+
Sbjct: 651 DKYSLARKEVLTNMCSRPMQMALYFCSGLLQDPAQFRHYALNVPLYTHFTSPIRRFADVL 710
Query: 432 VHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYF-----R 486
VHRLL+A+LG + + D L AD+ N R +MAS+ EL T ++F
Sbjct: 711 VHRLLAAALGYRERLDMAPDT--LQKQADHCNDR----RMASKRVQELSTSLFFAVLVKE 764
Query: 487 KRPTDTEARIVKIRSNGFIVFVPKFGIEGPVY 518
P ++EA ++ I F V V ++G++ +Y
Sbjct: 765 SGPLESEAMVMGILKQAFDVLVLRYGVQKRIY 796
>UNIPROTKB|E2QZ40 [details] [associations]
symbol:DIS3L2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051306 "mitotic sister chromatid separation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005737 GO:GO:0008285 GO:GO:0003723
GO:GO:0004540 GO:GO:0051306 InterPro:IPR022966 PROSITE:PS01175
Ensembl:ENSCAFT00000017770 Uniprot:E2QZ40
Length = 870
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 153/403 (37%), Positives = 236/403 (58%)
Query: 12 HALFVPKDRRIPKIRIQTRQLGNLLDKR--------IIVAVDSWDCQSRYPFGHYVRVIG 63
+ALF P D R+P+I + + R I + W S + G + +G
Sbjct: 263 YALFSPSDHRVPRIYVPLKDCPQDFVTRPKDYANTLFICRIVDWKEDSNFALGQLAKSLG 322
Query: 64 EIGDRDTESEMVLIDNDIDARPFSTQVLACLPP-LPWSVSSEDLANPIRLDLRDLRVFSV 122
+ G+ + E+E +L + +D FS++VL CLP LPW++ E+ + R DLR +F++
Sbjct: 323 QAGEIEPETEGILTEYGVDFSDFSSEVLDCLPQGLPWTIPPEEFSK--RRDLRKDCIFTI 380
Query: 123 DPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRID 182
DP +D+DDAL C L+ GNFEVGVHIADV+ FV G+PLD A++R TSVYLV++ +
Sbjct: 381 DPSTARDLDDALSCKPLADGNFEVGVHIADVSYFVPEGSPLDKVAAERATSVYLVQKVVP 440
Query: 183 MLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMD 242
MLP+ L E++CSL ++L FSVIW LTPE +I+ + +++I+SC LSY AQ+ ++
Sbjct: 441 MLPRLLCEELCSLHPMSDKLTFSVIWTLTPEGKILGEWFGRTIIRSCTKLSYEHAQSMIE 500
Query: 243 D--SRL----MDPLTTD---------LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDT 287
++ + P++ + + N++ +AK++R++R GAL L ++ F +D
Sbjct: 501 SPTEKIPEEELPPISPEHTSEEVHRAVLNLHKIAKELRKQRFVDGALRLDQLKLAFTLDH 560
Query: 288 ETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLL 347
ET P +Y+ R++N++VEEFML AN++VA + R FP +LLRRHP P +ML L+
Sbjct: 561 ETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKTHRTFPERALLRRHPPPQTKMLNDLM 620
Query: 348 RTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLIRILATRC 390
+GL +D SS+ AL SL GDD Y +L C
Sbjct: 621 EFCDQMGLPMDFSSAGALNKSLTETFGDDKYSLARKEVLTNMC 663
Score = 488 (176.8 bits), Expect = 8.9e-46, P = 8.9e-46
Identities = 118/311 (37%), Positives = 177/311 (56%)
Query: 217 ISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTL 276
+S + +S+I+S E + + + + N++ +AK++R++R GAL L
Sbjct: 490 LSYEHAQSMIESPTEKIPEEELPPISPEHTSEEVHRAVLNLHKIAKELRKQRFVDGALRL 549
Query: 277 ASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHP 336
++ F +D ET P +Y+ R++N++VEEFML AN++VA + R FP +LLRRHP
Sbjct: 550 DQLKLAFTLDHETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKTHRTFPERALLRRHP 609
Query: 337 SPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLIRILATRC---MTQ 393
P +ML L+ +GL +D SS+ AL SL GDD Y +L C M
Sbjct: 610 PPQTKMLNDLMEFCDQMGLPMDFSSAGALNKSLTETFGDDKYSLARKEVLTNMCSRPMQM 669
Query: 394 AVYFCSGDLTPP-EFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDR 452
A+YFCSG L +F HY L PLYTHFTSPIRR+ADV+VHRLL+A+LG +LP + D
Sbjct: 670 ALYFCSGVLQDQAQFRHYALNVPLYTHFTSPIRRFADVLVHRLLAAALGYRELPDMEPDT 729
Query: 453 PQLTSIADNLNYRHRNAQMASRGSVELHTLIYF-----RKRPTDTEARIVKIRSNGFIVF 507
L AD+ N R +MAS+ EL T ++F P ++EA ++ + + F V
Sbjct: 730 --LQKQADHCNDR----RMASKRVQELSTGLFFAILVKESGPLESEAMVLGVLNQAFDVL 783
Query: 508 VPKFGIEGPVY 518
V ++G++ +Y
Sbjct: 784 VLRYGVQKRIY 794
>UNIPROTKB|F6XKS7 [details] [associations]
symbol:DIS3L2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
CTD:129563 OMA:VQKRVYC EMBL:AAEX03014445 Ensembl:ENSCAFT00000017770
EMBL:AAEX03014441 EMBL:AAEX03014442 EMBL:AAEX03014443
EMBL:AAEX03014444 RefSeq:XP_852722.1 ProteinModelPortal:F6XKS7
GeneID:610194 KEGG:cfa:610194 Uniprot:F6XKS7
Length = 879
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 153/403 (37%), Positives = 236/403 (58%)
Query: 12 HALFVPKDRRIPKIRIQTRQLGNLLDKR--------IIVAVDSWDCQSRYPFGHYVRVIG 63
+ALF P D R+P+I + + R I + W S + G + +G
Sbjct: 263 YALFSPSDHRVPRIYVPLKDCPQDFVTRPKDYANTLFICRIVDWKEDSNFALGQLAKSLG 322
Query: 64 EIGDRDTESEMVLIDNDIDARPFSTQVLACLPP-LPWSVSSEDLANPIRLDLRDLRVFSV 122
+ G+ + E+E +L + +D FS++VL CLP LPW++ E+ + R DLR +F++
Sbjct: 323 QAGEIEPETEGILTEYGVDFSDFSSEVLDCLPQGLPWTIPPEEFSK--RRDLRKDCIFTI 380
Query: 123 DPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRID 182
DP +D+DDAL C L+ GNFEVGVHIADV+ FV G+PLD A++R TSVYLV++ +
Sbjct: 381 DPSTARDLDDALSCKPLADGNFEVGVHIADVSYFVPEGSPLDKVAAERATSVYLVQKVVP 440
Query: 183 MLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMD 242
MLP+ L E++CSL ++L FSVIW LTPE +I+ + +++I+SC LSY AQ+ ++
Sbjct: 441 MLPRLLCEELCSLHPMSDKLTFSVIWTLTPEGKILGEWFGRTIIRSCTKLSYEHAQSMIE 500
Query: 243 D--SRL----MDPLTTD---------LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDT 287
++ + P++ + + N++ +AK++R++R GAL L ++ F +D
Sbjct: 501 SPTEKIPEEELPPISPEHTSEEVHRAVLNLHKIAKELRKQRFVDGALRLDQLKLAFTLDH 560
Query: 288 ETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLL 347
ET P +Y+ R++N++VEEFML AN++VA + R FP +LLRRHP P +ML L+
Sbjct: 561 ETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKTHRTFPERALLRRHPPPQTKMLNDLM 620
Query: 348 RTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLIRILATRC 390
+GL +D SS+ AL SL GDD Y +L C
Sbjct: 621 EFCDQMGLPMDFSSAGALNKSLTETFGDDKYSLARKEVLTNMC 663
Score = 488 (176.8 bits), Expect = 9.3e-46, P = 9.3e-46
Identities = 118/311 (37%), Positives = 177/311 (56%)
Query: 217 ISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTL 276
+S + +S+I+S E + + + + N++ +AK++R++R GAL L
Sbjct: 490 LSYEHAQSMIESPTEKIPEEELPPISPEHTSEEVHRAVLNLHKIAKELRKQRFVDGALRL 549
Query: 277 ASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHP 336
++ F +D ET P +Y+ R++N++VEEFML AN++VA + R FP +LLRRHP
Sbjct: 550 DQLKLAFTLDHETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKTHRTFPERALLRRHP 609
Query: 337 SPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLIRILATRC---MTQ 393
P +ML L+ +GL +D SS+ AL SL GDD Y +L C M
Sbjct: 610 PPQTKMLNDLMEFCDQMGLPMDFSSAGALNKSLTETFGDDKYSLARKEVLTNMCSRPMQM 669
Query: 394 AVYFCSGDLTPP-EFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDR 452
A+YFCSG L +F HY L PLYTHFTSPIRR+ADV+VHRLL+A+LG +LP + D
Sbjct: 670 ALYFCSGVLQDQAQFRHYALNVPLYTHFTSPIRRFADVLVHRLLAAALGYRELPDMEPDT 729
Query: 453 PQLTSIADNLNYRHRNAQMASRGSVELHTLIYF-----RKRPTDTEARIVKIRSNGFIVF 507
L AD+ N R +MAS+ EL T ++F P ++EA ++ + + F V
Sbjct: 730 --LQKQADHCNDR----RMASKRVQELSTGLFFAILVKESGPLESEAMVLGVLNQAFDVL 783
Query: 508 VPKFGIEGPVY 518
V ++G++ +Y
Sbjct: 784 VLRYGVQKRIY 794
>RGD|1560168 [details] [associations]
symbol:Dis3l2 "DIS3 mitotic control homolog (S. cerevisiae)-like
2" species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0007067 "mitosis"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0051306 "mitotic sister chromatid
separation" evidence=ISO] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 RGD:1560168 GO:GO:0005737 GO:GO:0008285 GO:GO:0003723
GO:GO:0004540 GO:GO:0051306 InterPro:IPR022966 PROSITE:PS01175
OrthoDB:EOG415GCR IPI:IPI00950040 Ensembl:ENSRNOT00000066216
UCSC:RGD:1560168 ArrayExpress:D3ZWJ4 Uniprot:D3ZWJ4
Length = 884
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 151/391 (38%), Positives = 235/391 (60%)
Query: 12 HALFVPKDRRIPKIRIQTRQLGNLLDKR--------IIVAVDSWDCQSRYPFGHYVRVIG 63
+ALF P D R+P+I + + R I + W + G + +G
Sbjct: 277 YALFSPSDHRVPRIYVPLKDCPQDFMTRPKDYANTLFICRIIDWKEDCNFALGQLAKSLG 336
Query: 64 EIGDRDTESEMVLIDNDIDARPFSTQVLACLPP-LPWSVSSEDLANPIRLDLRDLRVFSV 122
+ G+ + E+E +L + +D FS++VL CLP LPW++ E++ R DLR +F++
Sbjct: 337 QAGEIEPETEGILTEYGVDFSDFSSEVLECLPQSLPWTIPPEEVGK--RRDLRKDCIFTI 394
Query: 123 DPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRID 182
DP +D+DDAL C L+ G FEVGVHIADV+ FV G+ LD A++R TSVYLV++ +
Sbjct: 395 DPSTARDLDDALSCRQLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQKVVP 454
Query: 183 MLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMD 242
MLP+ L E++CSL ++L FSVIW+LTPE +I+ + +++I+SC LSY AQ+ ++
Sbjct: 455 MLPRLLCEELCSLNPMTDKLTFSVIWKLTPEGKILEEWFGRTIIRSCTKLSYDHAQSMIE 514
Query: 243 D--SRL----MDPLTTD---------LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDT 287
+ ++ + P++ + + N++S+AK++R++R GAL L ++ F +D
Sbjct: 515 NPTEKIPKEELPPISPEHSIEEVHQAVLNLHSIAKQLRRQRFVDGALRLDQLKLAFTLDH 574
Query: 288 ETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLL 347
ET P +Y+ R++N++VEEFML AN++VA +I R FP +LLRRHP P +ML L+
Sbjct: 575 ETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKIFRTFPEQALLRRHPPPQTKMLSDLV 634
Query: 348 RTAAAVGLNLDVSSSKALADSLDRAVGDDPY 378
+GL +DVSS+ AL SL GDD Y
Sbjct: 635 EFCDQMGLPMDVSSAGALNKSLTNTFGDDKY 665
Score = 499 (180.7 bits), Expect = 6.1e-47, P = 6.1e-47
Identities = 112/268 (41%), Positives = 165/268 (61%)
Query: 256 NMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAAN 315
N++S+AK++R++R GAL L ++ F +D ET P +Y+ R++N++VEEFML AN
Sbjct: 543 NLHSIAKQLRRQRFVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRDSNKLVEEFMLLAN 602
Query: 316 VSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGD 375
++VA +I R FP +LLRRHP P +ML L+ +GL +DVSS+ AL SL GD
Sbjct: 603 MAVAHKIFRTFPEQALLRRHPPPQTKMLSDLVEFCDQMGLPMDVSSAGALNKSLTNTFGD 662
Query: 376 DPYF---NKLIRILATRCMTQAVYFCSGDLTPP-EFHHYGLAAPLYTHFTSPIRRYADVV 431
D Y +++ + +R M A+YFCSG L +F HY L PLYTHFTSPIRR+ADV+
Sbjct: 663 DKYSLARKEVLTNMYSRPMQMALYFCSGMLQDQAQFRHYALNVPLYTHFTSPIRRFADVI 722
Query: 432 VHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKR-PT 490
VHRLL+A+LG + P V D L AD+ N R ++ S+ L I ++ P
Sbjct: 723 VHRLLAAALGYSEQPDVEPDA--LQKQADHCNDRRMASKRVQELSIGLFFSILVKESGPL 780
Query: 491 DTEARIVKIRSNGFIVFVPKFGIEGPVY 518
++EA ++ + + F V V +FG++ +Y
Sbjct: 781 ESEAMVMGVLNQAFDVLVLRFGVQKRIY 808
>UNIPROTKB|E1B7R0 [details] [associations]
symbol:DIS3L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051306 "mitotic sister chromatid separation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005737 GO:GO:0008285 GO:GO:0003723
GO:GO:0004540 GO:GO:0051306 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 CTD:129563 OMA:VQKRVYC
EMBL:DAAA02006206 EMBL:DAAA02006207 EMBL:DAAA02006208
IPI:IPI00693579 RefSeq:NP_001179435.1 UniGene:Bt.54653
ProteinModelPortal:E1B7R0 Ensembl:ENSBTAT00000038112 GeneID:519222
KEGG:bta:519222 NextBio:20872834 Uniprot:E1B7R0
Length = 882
Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
Identities = 156/403 (38%), Positives = 237/403 (58%)
Query: 12 HALFVPKDRRIPKIRIQTRQLGNLLDKR--------IIVAVDSWDCQSRYPFGHYVRVIG 63
+ALF P D R+P+I + + R I + W S + G + +G
Sbjct: 265 YALFSPSDHRVPRIYVPLKDCPQDFVTRPKDYANTLFICRIMDWKEDSNFALGQLAKSLG 324
Query: 64 EIGDRDTESEMVLIDNDIDARPFSTQVLACLPP-LPWSVSSEDLANPIRLDLRDLRVFSV 122
+ G+ + E+E +L + +D FS++VL CLP LPW++ E+ + R DLR +F++
Sbjct: 325 QAGEIEPETEGILTEYGVDFSDFSSEVLECLPQGLPWTIPPEEFSR--RRDLRKDCIFTI 382
Query: 123 DPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRID 182
DP +D+DDAL C +L+ GNFEVGVHIADV+ FV G+ LD A++R TSVYLV++ +
Sbjct: 383 DPSTARDLDDALSCKSLADGNFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQKVVP 442
Query: 183 MLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQA--- 239
MLP+ L E++CSL ++L FSVIW LTP+ +I++ + +++I+SC LSY AQ+
Sbjct: 443 MLPRLLCEELCSLNPMTDKLTFSVIWTLTPKGKILAEWFGRTIIRSCTKLSYEHAQSMIE 502
Query: 240 ----RMDDSRL--MDPL-TTD-----LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDT 287
R+ + L + P T D + N++ +AK++R++R GAL L ++ F +D
Sbjct: 503 SPTRRIPERELPAISPEHTCDEVHRAVLNLHGVAKELRRQRFADGALRLDQLKLAFTLDH 562
Query: 288 ETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLL 347
ET P +Y+ R++N++VEEFML AN++VA +I R FP +LLRRHP P +ML L+
Sbjct: 563 ETGLPQGCHVYEYRDSNKLVEEFMLLANMAVAHKIHRAFPEQALLRRHPPPQTKMLNDLV 622
Query: 348 RTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLIRILATRC 390
+GL +D SS+ AL SL GDD Y +L C
Sbjct: 623 EFCDQMGLPMDFSSAGALNKSLTEMFGDDKYSLARKEVLTNMC 665
Score = 505 (182.8 bits), Expect = 1.3e-47, P = 1.3e-47
Identities = 123/311 (39%), Positives = 180/311 (57%)
Query: 217 ISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTL 276
+S + +S+I+S + D + + N++ +AK++R++R GAL L
Sbjct: 492 LSYEHAQSMIESPTRRIPERELPAISPEHTCDEVHRAVLNLHGVAKELRRQRFADGALRL 551
Query: 277 ASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHP 336
++ F +D ET P +Y+ R++N++VEEFML AN++VA +I R FP +LLRRHP
Sbjct: 552 DQLKLAFTLDHETGLPQGCHVYEYRDSNKLVEEFMLLANMAVAHKIHRAFPEQALLRRHP 611
Query: 337 SPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLIRILATRC---MTQ 393
P +ML L+ +GL +D SS+ AL SL GDD Y +L C M
Sbjct: 612 PPQTKMLNDLVEFCDQMGLPMDFSSAGALNKSLTEMFGDDKYSLARKEVLTNMCSRPMQM 671
Query: 394 AVYFCSGDLTPP-EFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDR 452
AVYFCSG L P +F HY L PLYTHFTSPIRR+ADV+VHRLL+++LG +LP V D
Sbjct: 672 AVYFCSGALRDPAQFRHYALNVPLYTHFTSPIRRFADVLVHRLLASALGYRELPDVEPD- 730
Query: 453 PQLTSIADNLNYRHRNAQMASRGSVELHTLIYF----RKR-PTDTEARIVKIRSNGFIVF 507
L AD+ N R +MAS+ EL T ++F R+ P ++EA ++ + + F V
Sbjct: 731 -SLQKQADHCNDR----RMASKRVQELSTGLFFAILVRESGPLESEAMVMGVLNQAFDVL 785
Query: 508 VPKFGIEGPVY 518
V ++G++ VY
Sbjct: 786 VLRYGVQKRVY 796
>MGI|MGI:2442555 [details] [associations]
symbol:Dis3l2 "DIS3 mitotic control homolog (S.
cerevisiae)-like 2" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0007067 "mitosis" evidence=ISO] [GO:0008285 "negative
regulation of cell proliferation" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0051306 "mitotic sister chromatid separation"
evidence=ISO] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
MGI:MGI:2442555 GO:GO:0005737 GO:GO:0008285 GO:GO:0051301
GO:GO:0003723 GO:GO:0004527 GO:GO:0004540 GO:GO:0051306
eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 CTD:129563 HOVERGEN:HBG107810
EMBL:AK031180 EMBL:BC036177 IPI:IPI00229771 IPI:IPI00881442
RefSeq:NP_001165628.1 RefSeq:NP_705758.1 UniGene:Mm.389152
ProteinModelPortal:Q8CI75 SMR:Q8CI75 STRING:Q8CI75
PhosphoSite:Q8CI75 PaxDb:Q8CI75 PRIDE:Q8CI75
Ensembl:ENSMUST00000065694 Ensembl:ENSMUST00000168237 GeneID:208718
KEGG:mmu:208718 UCSC:uc007bvu.2 UCSC:uc007bvv.2
HOGENOM:HOG000017705 InParanoid:Q8CI75 OMA:VQKRVYC
OrthoDB:EOG415GCR NextBio:372395 Bgee:Q8CI75 Genevestigator:Q8CI75
Uniprot:Q8CI75
Length = 870
Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
Identities = 149/391 (38%), Positives = 237/391 (60%)
Query: 12 HALFVPKDRRIPKIRIQTRQLG--------NLLDKRIIVAVDSWDCQSRYPFGHYVRVIG 63
+ALF P D R+P+I + + + + I + W + G + +G
Sbjct: 263 YALFSPSDHRVPRIYVPLKDCPQDFMTRPKDFANTLFICRIIDWKEDCNFALGQLAKSLG 322
Query: 64 EIGDRDTESEMVLIDNDIDARPFSTQVLACLPP-LPWSVSSEDLANPIRLDLRDLRVFSV 122
+ G+ + E+E +L + +D FS++VL CLP LPW++ +++ R DLR +F++
Sbjct: 323 QAGEIEPETEGILTEYGVDFSDFSSEVLECLPQSLPWTIPPDEVGK--RRDLRKDCIFTI 380
Query: 123 DPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRID 182
DP +D+DDAL C L+ G FEVGVHIADV+ FV G+ LD A++R TSVYLV++ +
Sbjct: 381 DPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQKVVP 440
Query: 183 MLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMD 242
MLP+ L E++CSL ++L FSVIW+LTPE +I+ + +++I+SC LSY AQ+ ++
Sbjct: 441 MLPRLLCEELCSLNPMTDKLTFSVIWKLTPEGKILEEWFGRTIIRSCTKLSYDHAQSMIE 500
Query: 243 D--SRL----MDPLTTD---------LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDT 287
+ ++ + P++ + + N++S+AK++R++R GAL L ++ F +D
Sbjct: 501 NPTEKIPEEELPPISPEHSVEEVHQAVLNLHSIAKQLRRQRFVDGALRLDQLKLAFTLDH 560
Query: 288 ETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLL 347
ET P +Y+ R++N++VEEFML AN++VA +I R FP +LLRRHP P +ML L+
Sbjct: 561 ETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKIFRTFPEQALLRRHPPPQTKMLSDLV 620
Query: 348 RTAAAVGLNLDVSSSKALADSLDRAVGDDPY 378
+GL +DVSS+ AL SL + GDD Y
Sbjct: 621 EFCDQMGLPMDVSSAGALNKSLTKTFGDDKY 651
Score = 504 (182.5 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 112/268 (41%), Positives = 166/268 (61%)
Query: 256 NMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAAN 315
N++S+AK++R++R GAL L ++ F +D ET P +Y+ R++N++VEEFML AN
Sbjct: 529 NLHSIAKQLRRQRFVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRDSNKLVEEFMLLAN 588
Query: 316 VSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGD 375
++VA +I R FP +LLRRHP P +ML L+ +GL +DVSS+ AL SL + GD
Sbjct: 589 MAVAHKIFRTFPEQALLRRHPPPQTKMLSDLVEFCDQMGLPMDVSSAGALNKSLTKTFGD 648
Query: 376 DPYF---NKLIRILATRCMTQAVYFCSGDLTPPE-FHHYGLAAPLYTHFTSPIRRYADVV 431
D Y +++ + +R M A+YFCSG L E F HY L PLYTHFTSPIRR+ADV+
Sbjct: 649 DKYSLARKEVLTNMYSRPMQMALYFCSGMLQDQEQFRHYALNVPLYTHFTSPIRRFADVI 708
Query: 432 VHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKR-PT 490
VHRLL+A+LG + P V D L AD+ N R ++ S+ L + ++ P
Sbjct: 709 VHRLLAAALGYSEQPDVEPDT--LQKQADHCNDRRMASKRVQELSIGLFFAVLVKESGPL 766
Query: 491 DTEARIVKIRSNGFIVFVPKFGIEGPVY 518
++EA ++ + + F V V +FG++ +Y
Sbjct: 767 ESEAMVMGVLNQAFDVLVLRFGVQKRIY 794
>UNIPROTKB|E1C372 [details] [associations]
symbol:DIS3L2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0051306 "mitotic sister chromatid
separation" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005737 GO:GO:0008285 GO:GO:0003723
GO:GO:0004540 GO:GO:0051306 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 OMA:VQKRVYC EMBL:AADN02020657
EMBL:AADN02020658 EMBL:AADN02020659 EMBL:AADN02020660
EMBL:AADN02020661 EMBL:AADN02020662 EMBL:AADN02020663
IPI:IPI00578279 Ensembl:ENSGALT00000012599 Uniprot:E1C372
Length = 875
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 152/390 (38%), Positives = 225/390 (57%)
Query: 13 ALFVPKDRRIPKIRIQTRQLGNLLDKR--------IIVAVDSWDCQSRYPFGHYVRVIGE 64
A+F P D R+P+ + + R I + W S + G + +G+
Sbjct: 269 AMFSPVDHRVPRAYVSLADCPSDFVARPEDYSNMLFICRIVDWKEDSNFASGQLAKSLGQ 328
Query: 65 IGDRDTESEMVLIDNDIDARPFSTQVLACLPP-LPWSVSSEDLANPIRLDLRDLRVFSVD 123
G+ + E+E +L + +D FS + L CLP LPW +S ++A R DLR +F++D
Sbjct: 329 AGEIEPETEGILTEYGVDFSDFSPEALECLPQGLPWVISPGEMAK--RRDLRKECIFTID 386
Query: 124 PPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDM 183
P KD+DDAL C L GNFEVGVHIADV+ FV T LD AS+R TSVYLV++ I M
Sbjct: 387 PSTAKDLDDALSCKQLPDGNFEVGVHIADVSYFVLEETALDRVASERATSVYLVQKVIPM 446
Query: 184 LPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDD 243
LPK L E++CSL +RL FSV+W++TPE +I+ + ++VI SCA LSY AQ+ +++
Sbjct: 447 LPKLLCEELCSLNPMRDRLTFSVMWKVTPEGKILDEWFGRTVICSCAKLSYDHAQSMIEN 506
Query: 244 -SRLMDP--------------LTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTE 288
++ P + + N++ +A+ +R++R GAL L ++ F +D E
Sbjct: 507 PGKVFSPEELPPISPQHSVAEIQQAVLNLHHIARHLRKQRFIDGALRLDQLKLSFTLDQE 566
Query: 289 THDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLR 348
+ P +YQ R++N++VEEFML AN++VA QI R FP +LLRRHP P ++L L+
Sbjct: 567 SGMPQGCYIYQYRDSNKLVEEFMLLANMAVAHQIYRSFPEQALLRRHPPPQSKLLNDLME 626
Query: 349 TAAAVGLNLDVSSSKALADSLDRAVGDDPY 378
VGL +D SS+ +L SL+ G D Y
Sbjct: 627 FCHQVGLEIDFSSAGSLHKSLNETFGADKY 656
Score = 483 (175.1 bits), Expect = 3.2e-45, P = 3.2e-45
Identities = 109/268 (40%), Positives = 160/268 (59%)
Query: 256 NMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAAN 315
N++ +A+ +R++R GAL L ++ F +D E+ P +YQ R++N++VEEFML AN
Sbjct: 534 NLHHIARHLRKQRFIDGALRLDQLKLSFTLDQESGMPQGCYIYQYRDSNKLVEEFMLLAN 593
Query: 316 VSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGD 375
++VA QI R FP +LLRRHP P ++L L+ VGL +D SS+ +L SL+ G
Sbjct: 594 MAVAHQIYRSFPEQALLRRHPPPQSKLLNDLMEFCHQVGLEIDFSSAGSLHKSLNETFGA 653
Query: 376 DPYFNKLIRILA---TRCMTQAVYFCSGDLTPPE-FHHYGLAAPLYTHFTSPIRRYADVV 431
D Y +L +R M A+YFC+G L F HY L P YTHFTSPIRRYADVV
Sbjct: 654 DKYSEARKEVLTNMFSRPMQMALYFCTGVLKDETLFRHYALNVPFYTHFTSPIRRYADVV 713
Query: 432 VHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRK-RPT 490
VHRLLSASLGI P + ++ + A++ N R ++ S +L ++ R+ P
Sbjct: 714 VHRLLSASLGISS-P-IKMEKEAIQRQAEHCNDRKMASKRVQELSTDLFFAVFVRECGPL 771
Query: 491 DTEARIVKIRSNGFIVFVPKFGIEGPVY 518
++EA ++ + + F V V KFG++ +Y
Sbjct: 772 ESEAMVMGVLNEAFDVLVLKFGVQKRIY 799
>ASPGD|ASPL0000054659 [details] [associations]
symbol:AN1158 species:162425 "Emericella nidulans"
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005935
"cellular bud neck" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0032153 "cell division site"
evidence=IEA] [GO:0000900 "translation repressor activity, nucleic
acid binding" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0060237 "regulation of fungal-type cell wall
organization" evidence=IEA] [GO:0008298 "intracellular mRNA
localization" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0034613 "cellular protein
localization" evidence=IEA] [GO:2000115 "regulation of maintenance
of bipolar cell polarity regulating cell shape" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 EMBL:AACD01000016
EMBL:BN001308 GO:GO:0003723 GO:GO:0004540 eggNOG:COG0557
OrthoDB:EOG4MGWGN HOGENOM:HOG000207194 OMA:DIFICGS
RefSeq:XP_658762.1 ProteinModelPortal:Q5BE72 STRING:Q5BE72
EnsemblFungi:CADANIAT00001468 GeneID:2876936 KEGG:ani:AN1158.2
Uniprot:Q5BE72
Length = 1374
Score = 648 (233.2 bits), Expect = 2.4e-62, P = 2.4e-62
Identities = 168/524 (32%), Positives = 264/524 (50%)
Query: 15 FVPKDRRIPKIRIQTRQLG-NLLDK------RIIVA-VDSWDCQSRYPFGHYVRVIGEIG 66
F P D+R+P I I T Q + ++K RI VA + W S +PFG V +GE+G
Sbjct: 653 FKPTDKRVPLIAIPTEQAPRDFVEKHQDYANRIFVACIKRWPITSLHPFGTLVEQLGEMG 712
Query: 67 DRDTESEMVLIDNDIDARPFSTQVLACLPPLPWSVSSE-DLANPIRLDLRDLRVFSVDPP 125
D E+E +L DN+ + F+ VL + WS+SSE DL++ R D R F+++P
Sbjct: 713 DLKVETEALLRDNNFGSDEFTDAVLKSIGWENWSISSEGDLSS--RRDFRQETTFTIEPT 770
Query: 126 GCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLP 185
G ++D+A H AL G E+G+H+ D+ +FV P + +D EA KRGT+VYLV+R + MLP
Sbjct: 771 GTSELDNAYHFKALPDGKAEIGIHVTDIAHFVKPNSLVDREAKKRGTAVYLVDRLVKMLP 830
Query: 186 KPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYT--KSVIKSCAALSY--VEAQARM 241
+ ++C+L ERL SV+++ PE I KS+IKS L + VE+ +
Sbjct: 831 PRIATELCALLPGEERLTVSVVFKANPETGAIDDDIWIGKSIIKSSGKLGFDEVESVIKG 890
Query: 242 DDSRLMDPLTTDL-RNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQI 300
+ ++ D+ R + A K R+ R+ + + +D E + P++ ++
Sbjct: 891 TSDVPLSGVSVDIIRGLQRTASKFREARLGNRVSQIPPLRLLHSLDDE-NVPVESNIFGS 949
Query: 301 REANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVS 360
++VEE AN VA +++ P + LRR SP L + +G D S
Sbjct: 950 SAVRELVEELSCKANFLVARKLVAALPDKAFLRRQQSPNPRRLHSFVDRMNRLGFGFDES 1009
Query: 361 SSKALADSLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHF 420
SS +L SL + DD K + + + M +A Y+ +G + HY L P+YTHF
Sbjct: 1010 SSGSLQSSLCKVKDDD--LRKGMETIFVKSMQRAKYYVAGTVQDEMRPHYTLNLPVYTHF 1067
Query: 421 TSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELH 480
T+P+RRYADV+VHR L A L + D L+ AD N + +A A SV +
Sbjct: 1068 TNPLRRYADVIVHRQLEAVLSDGAI-EFSDDVESLSKTADICNNKKDSAHNAQEQSVHIE 1126
Query: 481 TLIYFRKRPTD------TEARIVKIRSNGFIVFVPKFGIEGPVY 518
K + +E ++ + + F V +P++G E V+
Sbjct: 1127 ACRNMDKLRQEIGGDLISEGIVLCVYESAFDVLIPEYGFEKRVH 1170
>TAIR|locus:2203231 [details] [associations]
symbol:AT1G77680 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0004540
"ribonuclease activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0003723 GO:GO:0004540
eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175 OMA:HIYEYRE
EMBL:AK229034 IPI:IPI00531584 RefSeq:NP_177891.1 UniGene:At.22476
ProteinModelPortal:Q0WPN0 STRING:Q0WPN0 PaxDb:Q0WPN0 PRIDE:Q0WPN0
EnsemblPlants:AT1G77680.1 GeneID:844104 KEGG:ath:AT1G77680
TAIR:At1g77680 HOGENOM:HOG000030596 InParanoid:Q0WPN0
PhylomeDB:Q0WPN0 ProtClustDB:CLSN2682125 Genevestigator:Q0WPN0
Uniprot:Q0WPN0
Length = 1055
Score = 586 (211.3 bits), Expect = 7.5e-60, Sum P(2) = 7.5e-60
Identities = 147/407 (36%), Positives = 217/407 (53%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVA-VDSWDCQSRYPFGHYVRVIGEIGDRDTES 72
L VP IR + L L+ ++ A + W S +P + G + + +
Sbjct: 380 LIVPFHVLPGSIRARLENLDPNLEAELVAAQIVDWGEGSPFPVAQITHLFGRGSELEPQI 439
Query: 73 EMVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDD 132
+L N + FS L LP +PW V E++ R DLRDL V ++DP D+DD
Sbjct: 440 NAILYQNSVCDSDFSPGSLTSLPRVPWEVPEEEVQR--RKDLRDLCVLTIDPSTATDLDD 497
Query: 133 ALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDI 192
AL +L G F VGVHIADV+ FV P T LD EA R TSVYL++R+I MLP L+E++
Sbjct: 498 ALSVQSLPGGFFRVGVHIADVSYFVLPETALDTEARFRSTSVYLMQRKISMLPPLLSENV 557
Query: 193 CSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDD-SRLMD--- 248
SL +RLAFS++W+L E ++I +++I+SC LSY AQ +D S + +
Sbjct: 558 GSLSPGADRLAFSILWDLNREGDVIDRWIGRTIIRSCCKLSYDHAQDIIDGKSDVAENGW 617
Query: 249 P----------LTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMY 298
P +T ++ ++ ++ +RQ+R GAL L +++ F D E P D
Sbjct: 618 PALHGSFKWCDVTRSVKQLSEISTTLRQKRFRNGALQLENSKPVFLFD-EHGVPYDFVTC 676
Query: 299 QIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLD 358
+ +N +VEEFML AN++ AE I + + SLLRRHP P L+ + G++LD
Sbjct: 677 SRKGSNFLVEEFMLLANMTAAEVISQAYRASSLLRRHPEPNTRKLKEFEGFCSKHGMDLD 736
Query: 359 VSSSKALADSLDRAVG---DDPYFNKLIRILATRCMTQAVYFCSGDL 402
+SSS L DSL++ G DD F ++ A + M A YFC+G+L
Sbjct: 737 ISSSGQLQDSLEKITGNLKDDSVFVDILNNYAIKPMQLASYFCTGNL 783
Score = 363 (132.8 bits), Expect = 5.8e-32, Sum P(2) = 5.8e-32
Identities = 83/203 (40%), Positives = 121/203 (59%)
Query: 250 LTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEE 309
+T ++ ++ ++ +RQ+R GAL L +++ F D E P D + +N +VEE
Sbjct: 629 VTRSVKQLSEISTTLRQKRFRNGALQLENSKPVFLFD-EHGVPYDFVTCSRKGSNFLVEE 687
Query: 310 FMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSL 369
FML AN++ AE I + + SLLRRHP P L+ + G++LD+SSS L DSL
Sbjct: 688 FMLLANMTAAEVISQAYRASSLLRRHPEPNTRKLKEFEGFCSKHGMDLDISSSGQLQDSL 747
Query: 370 DRAVG---DDPYFNKLIRILATRCMTQAVYFCSGDL--TPPEFHHYGLAAPLYTHFTSPI 424
++ G DD F ++ A + M A YFC+G+L + E+ HY LA PLYTHFTSP+
Sbjct: 748 EKITGNLKDDSVFVDILNNYAIKPMQLASYFCTGNLKDSVAEWGHYALAVPLYTHFTSPL 807
Query: 425 RRYADVVVHRLLSASLGIYKLPS 447
RRY D+VVHR L+A+L +L S
Sbjct: 808 RRYPDIVVHRALAAALEAEELYS 830
Score = 62 (26.9 bits), Expect = 7.5e-60, Sum P(2) = 7.5e-60
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 455 LTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPT-DTEARIVKIRSNGFIVFVPKFGI 513
L+ +A N R A+ +L+T +++ EAR++ + S V++ K GI
Sbjct: 878 LSDVAAYCNERKLAARKVRDACDKLYTWFVLKQKEIFPCEARVMNLGSRFMTVYISKLGI 937
Query: 514 EGPVY 518
E +Y
Sbjct: 938 ERRIY 942
>FB|FBgn0035111 [details] [associations]
symbol:CG16940 species:7227 "Drosophila melanogaster"
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS]
[GO:0008859 "exoribonuclease II activity" evidence=ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 EMBL:AE014296 GO:GO:0003723 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 GO:GO:0008859
EMBL:BT044564 RefSeq:NP_728490.1 UniGene:Dm.29548 SMR:Q8IRJ7
EnsemblMetazoa:FBtr0072486 GeneID:38034 KEGG:dme:Dmel_CG16940
UCSC:CG16940-RC FlyBase:FBgn0035111 InParanoid:Q8IRJ7 OMA:LESGHVI
OrthoDB:EOG46M912 GenomeRNAi:38034 NextBio:806667 Uniprot:Q8IRJ7
Length = 1044
Score = 612 (220.5 bits), Expect = 6.7e-59, P = 6.7e-59
Identities = 167/505 (33%), Positives = 258/505 (51%)
Query: 14 LFVPKDRRIPKI-RIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTES 72
++VPKD I Q + LL + + DC + ++ +G +G+ D E
Sbjct: 467 VYVPKDACAAHIGNKQQIDVSGLL---YLAHILETDCNG-HCIAELIQPVGRVGNLDDEL 522
Query: 73 EMVLIDNDI-DARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDID 131
+ +L N + D +PF + + P +S EDL R DLR + +F++DP +D+D
Sbjct: 523 KAILFHNGLRDIKPFEQRFIDIYSQPPPPISQEDLRQ--RKDLRKMCIFTIDPMTARDLD 580
Query: 132 DALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLT-- 189
DA+ L +E+GVHI+DV++F+ LD+ +R TS+YL I MLP+ L
Sbjct: 581 DAVSIEKLGDNEYEIGVHISDVSHFLIEDNELDNIVKERSTSIYLANEVIHMLPQSLCMR 640
Query: 190 ------EDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDD 243
+D + V+ + PE + ++VI SC+ +Y AQ +D+
Sbjct: 641 CSLLPGQDKFAFSVFWRMNGKGVMLQKKPE-------FCRTVINSCSQFAYEHAQKIIDN 693
Query: 244 --SRLMD---PLTT------DLRN----MNSLAKKMRQRRIERGALTLASAEVKFQIDTE 288
R + P D+RN ++ +A +R+ R++ GALT+ +A+++F +D
Sbjct: 694 PNERFTENDFPTILNGFNPDDIRNRVLWLHDIASSIRKTRLDNGALTINNAKLRFLLDPI 753
Query: 289 THDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLR 348
T +PL + + REAN+++EEFML AN +VA I FP ++LR HP P + L+ L
Sbjct: 754 TGEPLSFEVEKQREANRLIEEFMLLANQAVARFIHDSFPDIAVLRNHPPPLIKSLKALRE 813
Query: 349 TAAAVGLNLDVSSSKALADSLDRAVGDDPY---FNKLIRILATRCMTQAVYFCS-GDLTP 404
A+G LD SSSKAL +S+ R + P N + L + M +A YFCS G P
Sbjct: 814 KLLALGFELDYSSSKALQESMVRLCNEAPNPVAMNACLSQLLMKPMARATYFCSEGKSEP 873
Query: 405 PEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPS-VFQDRPQLTSIADNLN 463
+ HY L+ P+YTHFTSPIRRY D++VHRLL+A+L P D LT +A+
Sbjct: 874 ADLWHYALSIPIYTHFTSPIRRYPDILVHRLLAAALKYCTPPKRTPDDLHTLTKLANERK 933
Query: 464 YRHRNAQMASRGSVELHTLIYFRKR 488
Y NA+ A S L+ Y +
Sbjct: 934 Y---NAKKAGEDSGNLYFKRYVHNK 955
>RGD|1304646 [details] [associations]
symbol:Dis3 "DIS3 mitotic control homolog (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=ISO]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0005085
"guanyl-nucleotide exchange factor activity" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0016075 "rRNA catabolic
process" evidence=ISO] [GO:0071034 "CUT catabolic process"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR001900 Pfam:PF00773 InterPro:IPR006596 RGD:1304646
GO:GO:0003723 GO:GO:0004540 SMART:SM00670 IPI:IPI00392641
PRIDE:D3ZAM5 Ensembl:ENSRNOT00000012182 UCSC:RGD:1304646
Uniprot:D3ZAM5
Length = 565
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 108/194 (55%), Positives = 153/194 (78%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
LF P D+RIP+IRI+TRQ L +RIIVA+D W SRYP GH+V+ +G++G+++TE+E
Sbjct: 371 LFTPADKRIPRIRIETRQASALEGRRIIVAIDGWPRNSRYPNGHFVKNLGDVGEKETETE 430
Query: 74 MVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDA 133
++L+++D+ +PFS VL+ LP +PWS++ ED+ N R DLR L V SVDPPGC DIDDA
Sbjct: 431 VLLLEHDVPHQPFSQAVLSFLPKMPWSITEEDMKN--REDLRHLCVCSVDPPGCTDIDDA 488
Query: 134 LHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDIC 193
LHC LS+GN EVGVHIADV++F+ PG LD E+++RGT+VYL E+RIDM+P+ L+ ++C
Sbjct: 489 LHCRELSNGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLC 548
Query: 194 SLRADVERLAFSVI 207
SLR++V+RL ++
Sbjct: 549 SLRSNVDRLLLHML 562
>UNIPROTKB|F2Z2C0 [details] [associations]
symbol:DIS3 "Exosome complex exonuclease RRP44"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 InterPro:IPR006596 GO:GO:0003723
GO:GO:0004540 EMBL:AL138695 SMART:SM00670 EMBL:AL391384
HGNC:HGNC:20604 ChiTaRS:DIS3 IPI:IPI00978109
ProteinModelPortal:F2Z2C0 SMR:F2Z2C0 PRIDE:F2Z2C0
Ensembl:ENST00000490646 ArrayExpress:F2Z2C0 Bgee:F2Z2C0
Uniprot:F2Z2C0
Length = 559
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 105/188 (55%), Positives = 148/188 (78%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
LF P D+RIP+IRI+TRQ L +RIIVA+D W SRYP GH+VR +G++G+++TE+E
Sbjct: 372 LFTPADKRIPRIRIETRQASTLEGRRIIVAIDGWPRNSRYPNGHFVRNLGDVGEKETETE 431
Query: 74 MVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDA 133
++L+++D+ +PFS VL+ LP +PWS++ +D+ N R DLR L + SVDPPGC DIDDA
Sbjct: 432 VLLLEHDVPHQPFSQAVLSFLPKMPWSITEKDMKN--REDLRHLCICSVDPPGCTDIDDA 489
Query: 134 LHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDIC 193
LHC L +GN EVGVHIADV++F+ PG LD E+++RGT+VYL E+RIDM+P+ L+ ++C
Sbjct: 490 LHCRELENGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLC 549
Query: 194 SLRADVER 201
SL+ DV+R
Sbjct: 550 SLKCDVDR 557
>UNIPROTKB|H7C440 [details] [associations]
symbol:DIS3L2 "DIS3-like exonuclease 2" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 EMBL:AC013435
GO:GO:0004540 InterPro:IPR022966 PROSITE:PS01175 EMBL:AC019130
EMBL:AC068134 EMBL:AC093374 EMBL:AC138658 HGNC:HGNC:28648
ChiTaRS:DIS3L2 EMBL:AC105461 ProteinModelPortal:H7C440
Ensembl:ENST00000424049 Bgee:H7C440 Uniprot:H7C440
Length = 383
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 124/295 (42%), Positives = 184/295 (62%)
Query: 111 RLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKR 170
R DLR +F++DP +D+DDAL C L+ GNF+VGVHIADV+ FV G+ LD A++R
Sbjct: 6 RRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFKVGVHIADVSYFVPEGSDLDKVAAER 65
Query: 171 GTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCA 230
TSVYLV++ + MLP+ L E++CSL ++L FSVIW LTPE +I+ + +++I+SC
Sbjct: 66 ATSVYLVQKVVPMLPRLLCEELCSLNPMSDKLTFSVIWTLTPEGKILDEWFGRTIIRSCT 125
Query: 231 ALSYVEAQARMDD------SRLMDPLTTD---------LRNMNSLAKKMRQRRIERGALT 275
LSY AQ+ ++ ++ + P++ + + N++ +AK++RQ+R GAL
Sbjct: 126 KLSYEHAQSMIESPTEKIPAKELPPISPEHSSEEVHQAVLNLHGIAKQLRQQRFVDGALR 185
Query: 276 LASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRH 335
L ++ F +D ET P +Y+ RE+N++VEEFML AN++VA +I R FP +LLRRH
Sbjct: 186 LDQLKLAFTLDHETGLPQGCHIYEYRESNKLVEEFMLLANMAVAHKIHRAFPEQALLRRH 245
Query: 336 PSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLIRILATRC 390
P P ML L+ +GL +D SS+ AL SL + GDD Y +L C
Sbjct: 246 PPPQTRMLSDLVEFCDQMGLPVDFSSAGALNKSLTQTFGDDKYSLARKEVLTNMC 300
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 103/223 (46%), Positives = 138/223 (61%)
Query: 256 NMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAAN 315
N++ +AK++RQ+R GAL L ++ F +D ET P +Y+ RE+N++VEEFML AN
Sbjct: 166 NLHGIAKQLRQQRFVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRESNKLVEEFMLLAN 225
Query: 316 VSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGD 375
++VA +I R FP +LLRRHP P ML L+ +GL +D SS+ AL SL + GD
Sbjct: 226 MAVAHKIHRAFPEQALLRRHPPPQTRMLSDLVEFCDQMGLPVDFSSAGALNKSLTQTFGD 285
Query: 376 DPYFNKLIRILATRC---MTQAVYFCSGDLTPP-EFHHYGLAAPLYTHFTSPIRRYADVV 431
D Y +L C M A+YFCSG L P +F HY L PLYTHFTSPIRR+ADV+
Sbjct: 286 DKYSLARKEVLTNMCSRPMQMALYFCSGLLQDPAQFRHYALNVPLYTHFTSPIRRFADVL 345
Query: 432 VHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASR 474
VHRLL+A+LG + + D L AD+ N R +MAS+
Sbjct: 346 VHRLLAAALGYRERLDMAPDT--LQKQADHCNDR----RMASK 382
>TIGR_CMR|BA_5334 [details] [associations]
symbol:BA_5334 "ribonuclease R" species:198094 "Bacillus
anthracis str. Ames" [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008997 "ribonuclease R activity" evidence=ISS] HAMAP:MF_01895
InterPro:IPR001900 InterPro:IPR003029 InterPro:IPR004476
InterPro:IPR011129 InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773
PROSITE:PS50126 SMART:SM00357 SMART:SM00955 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
GO:GO:0090305 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0016070 InterPro:IPR022967 SMART:SM00316 InterPro:IPR022966
PROSITE:PS01175 GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206
TIGRFAMs:TIGR00358 KO:K12573 OMA:FGFLIPD TIGRFAMs:TIGR02063
HOGENOM:HOG000071119 RefSeq:NP_847510.1 RefSeq:YP_021992.2
RefSeq:YP_031196.1 ProteinModelPortal:Q81XA6 IntAct:Q81XA6
DNASU:1084838 EnsemblBacteria:EBBACT00000009754
EnsemblBacteria:EBBACT00000016672 EnsemblBacteria:EBBACT00000021451
GeneID:1084838 GeneID:2818515 GeneID:2848989 KEGG:ban:BA_5334
KEGG:bar:GBAA_5334 KEGG:bat:BAS4956 ProtClustDB:CLSK873641
BioCyc:BANT260799:GJAJ-5031-MONOMER
BioCyc:BANT261594:GJ7F-5204-MONOMER Uniprot:Q81XA6
Length = 808
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 163/534 (30%), Positives = 272/534 (50%)
Query: 27 IQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESEMVLIDNDIDARPF 86
+++ +G + +++V + S+ G ++++G D + V+ + + F
Sbjct: 171 LKSASMGAVEGHKVVVKITSYPENRLSAEGEVIQILGHKNDPGVDILSVIHKHHLPLA-F 229
Query: 87 STQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEV 146
+V+ +P ++S EDL + R DLRD + ++D KD+DDA+ T L +GN+++
Sbjct: 230 PEEVMEHANSVPETISEEDLKD--RRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKL 287
Query: 147 GVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSV 206
GVHIADV+++V G+P+D EA++R TSVYLV+R I M+P L+ ICSL V+RL S
Sbjct: 288 GVHIADVSHYVQEGSPIDVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSC 347
Query: 207 IWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDS--RLM---DPLTTDLRNMNSLA 261
E+ +++ +SVIK+ ++Y + ++ ++D LM +PL + M LA
Sbjct: 348 EMEINNLGDVVKHEIFQSVIKTTERMTYADVRSILEDEDEELMKRYEPLVPMFKEMGQLA 407
Query: 262 KKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQ 321
+ +R++R+ RGA+ E K +D E P D+ M + +++EEFML AN +VAE
Sbjct: 408 QILREKRMRRGAIDFDFKEAKVLVDEEGK-PTDVVMRDRSVSEKLIEEFMLVANETVAEH 466
Query: 322 ILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSS----KALADSLDRAVGDDP 377
+ + R H P ++ LE G + ++ +AL L+ G
Sbjct: 467 F-HWMNVPFMYRVHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPE 525
Query: 378 YFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLS 437
+I + R M QA Y D H+GL+ YTHFTSPIRRY D +VHRL+
Sbjct: 526 --EVVISTVMLRSMKQARY--DAD----SLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIR 577
Query: 438 ASLGIYKLPSVFQD--RPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFR-KRPTDTEA 494
+ K+ + Q R +L IA++ + R A A R + EL Y K + +
Sbjct: 578 EYIINGKVDNETQAKWREKLPEIAEHSSNMERRAVEAERETDELKKAEYMLDKIGEEYDG 637
Query: 495 RIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWY-VDEQQQKIV-KMDGNL 546
I + + G V +P IEG V+++ + D+Y DEQ ++ + GN+
Sbjct: 638 MISSVTNFGLFVELPNT-IEGLVHVSYL----TDDYYRYDEQHFAMIGERTGNV 686
>TIGR_CMR|CHY_0289 [details] [associations]
symbol:CHY_0289 "ribonuclease R" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006401 "RNA
catabolic process" evidence=ISS] [GO:0008997 "ribonuclease R
activity" evidence=ISS] HAMAP:MF_01895 InterPro:IPR001900
InterPro:IPR003029 InterPro:IPR004476 InterPro:IPR011129
InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126
SMART:SM00357 SMART:SM00955 GO:GO:0005737 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0090305
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206
TIGRFAMs:TIGR00358 KO:K12573 OMA:FGFLIPD TIGRFAMs:TIGR02063
RefSeq:YP_359161.1 ProteinModelPortal:Q3AFC3 STRING:Q3AFC3
GeneID:3727430 KEGG:chy:CHY_0289 PATRIC:21273751
HOGENOM:HOG000071119 BioCyc:CHYD246194:GJCN-290-MONOMER
Uniprot:Q3AFC3
Length = 724
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 170/546 (31%), Positives = 275/546 (50%)
Query: 12 HALFVPKDRRIP-KIRIQTRQLGNLLD--KRIIVAVDSWDCQSRYPFGHYVRVIGEIGDR 68
+ L P D RI I I + G ++++V + ++ + P G + ++G+ D+
Sbjct: 144 YGLVEPDDERITGAIIIPLGKKGVKAKNGEKVVVEITAYPRKGELPEGKIIEILGDPEDQ 203
Query: 69 DTESEMVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCK 128
+T + ++ + F + + + + E+L + R DLR + ++D K
Sbjct: 204 ETRLKAIIKKYGL-LDSFKPETIKEARAISQEIGPEELKS--RRDLRGEMIVTIDDEDAK 260
Query: 129 DIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPL 188
D+DDA+ L +GN+++GVHIADV+ +V G+ LD EA +RGTSVYL + + MLP L
Sbjct: 261 DLDDAVSLKKLPNGNYQLGVHIADVSYYVREGSALDKEALERGTSVYLAGKVLPMLPPEL 320
Query: 189 TEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSY-VEAQARMD-DSRL 246
+ ICSL V+RL SV+ E+TP E++S SVIK+ A L+Y + +A +D D +
Sbjct: 321 SNGICSLNPRVDRLTLSVVMEITPAGEVVSHEIFPSVIKTRARLTYTIVKKAVLDKDPKA 380
Query: 247 MDPL---TTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREA 303
+ L L M +LA +R+RR+ERGA+ E K +D + + +DI + A
Sbjct: 381 REELGDLVPMLEEMANLAMILRKRRLERGAIDFDLPEAKVILD-DKGEVVDIVRRERNIA 439
Query: 304 NQMVEEFMLAANVSVAEQIL-RQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSS 362
+Q++EEFML N +VAE+ ++ P L R H P + ++ L G NL
Sbjct: 440 HQLIEEFMLITNETVAERFFWQEVPF--LYRIHEDPDEGKIQSLKEFLRLFGYNLKGGRD 497
Query: 363 -----KALADSLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLY 417
+ L++ G ++I + R M QA Y + H+GLAA Y
Sbjct: 498 GKYHPREFQRLLEKVAGRKE--ERVINAVMLRSMKQARY------SAERIWHFGLAAEYY 549
Query: 418 THFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQ-LTSIADNLNYRHRNAQMASRGS 476
THFTSPIRRY D+++HR++ L P + L +A + + R A A R S
Sbjct: 550 THFTSPIRRYPDLMIHRIIREVLEGKLTPRREAKLAKILPKVAKHSSEMERRAMEAERES 609
Query: 477 VELHTLIYF-RKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYV-DE 534
VE+ + + K T+ +A I + S GF V +P IEG V ++ D+Y+ DE
Sbjct: 610 VEMRMVEFMVGKEGTEYDAIISGVTSFGFFVQLPNL-IEGLVRVSTL----EDDYYLYDE 664
Query: 535 QQQKIV 540
+ ++
Sbjct: 665 KSYALI 670
>TIGR_CMR|GSU_1485 [details] [associations]
symbol:GSU_1485 "ribonuclease R, putative" species:243231
"Geobacter sulfurreducens PCA" [GO:0008997 "ribonuclease R
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0090305 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070 InterPro:IPR022967
SMART:SM00316 InterPro:IPR022966 PROSITE:PS01175 GO:GO:0008859
InterPro:IPR013223 Pfam:PF08206 TIGRFAMs:TIGR00358 KO:K12573
OMA:FGFLIPD TIGRFAMs:TIGR02063 HOGENOM:HOG000071119
RefSeq:NP_952536.1 ProteinModelPortal:Q74D34 GeneID:2686169
KEGG:gsu:GSU1485 PATRIC:22025817 ProtClustDB:CLSK828384
BioCyc:GSUL243231:GH27-1468-MONOMER Uniprot:Q74D34
Length = 763
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 176/543 (32%), Positives = 266/543 (48%)
Query: 15 FV-PKDRRIPK-IRIQTRQLGNLLDKRIIVA-VDSWDCQSRYPFGHYVRVIGEIGDRDTE 71
FV P D RI + I + + G +++VA + +W + + G V V+G D + E
Sbjct: 147 FVQPDDTRITRDIAVPQKAWGGARSGQVVVAELTAWPTERKKAEGRIVEVLGSPDDPEVE 206
Query: 72 SEMVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDID 131
++ +D+ F VL P V D+A R+DLR+ ++D +D D
Sbjct: 207 VLTIIRKHDLPYE-FPVDVLTEARSTPQEVRRGDVAK--RVDLRERLTVTIDGETARDFD 263
Query: 132 DALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTED 191
DA+ G+ + V IADV+++V PG+ LD EA RGTSVY +R I MLP+ L+
Sbjct: 264 DAVSVQREKGGDIRLWVSIADVSHYVKPGSALDREAYLRGTSVYFPDRCIPMLPEELSNG 323
Query: 192 ICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDS-----RL 246
ICSL VERL + T I S+ + SVI+S A L+Y + + D +
Sbjct: 324 ICSLNPQVERLTLTAEMLFTRSGAIKSSSFYPSVIRSAARLTYTTVRKVLVDGDPEAIKA 383
Query: 247 MDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQM 306
L DL M LA ++ ++R +RG++ E + +D + + +DI + A+++
Sbjct: 384 NRHLVDDLEVMKELALRLMEKRKKRGSIDFDLPEPQIVLDLQG-EMVDIIRSERNLAHRI 442
Query: 307 VEEFMLAANVSVAEQIL-RQFPLCSLLRRH--PSPTK--EMLEPLLRTAAAVGLNLDVSS 361
+EEFMLAAN +VA I R P SL R H P PTK + E + A ++ D
Sbjct: 443 IEEFMLAANEAVASHIEERGIP--SLYRVHEPPDPTKLTDFREFIFNFGYAFRMDGDRVD 500
Query: 362 SKALADSLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFT 421
L +D A G ++I + RCM QA Y + H+GLAA YTHFT
Sbjct: 501 PHELQRLIDEAEGKPE--ERMINEVLLRCMKQARY------SHENLGHFGLAARCYTHFT 552
Query: 422 SPIRRYADVVVHRLLSASLGIYKLPSVFQDR--PQLTSIADNLNYRHRNAQMASRGSVEL 479
SPIRRY D+VVHR+L L + Q+R L A+ + R R A A R V L
Sbjct: 553 SPIRRYPDLVVHRILKDILA-GAMTEKEQERLAAALPETAEQTSRRERLAMEAEREIVAL 611
Query: 480 HTLIYFRKRPTDT-EARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWY-VDEQQQ 537
+ ++R +T E I + S GF V + +EG V+++ + D+Y +E++
Sbjct: 612 KKAQFMKERVGETFEGYITGVSSFGFFVELIDLFVEGMVHVSTL----ANDFYRYEEKRH 667
Query: 538 KIV 540
+V
Sbjct: 668 SLV 670
>WB|WBGene00018612 [details] [associations]
symbol:F48E8.6 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004540 "ribonuclease
activity" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 EMBL:FO081421 GO:GO:0003723 GO:GO:0090305
GO:GO:0004540 eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 OMA:HIYEYRE HOGENOM:HOG000017705
PIR:T16409 RefSeq:NP_498160.2 ProteinModelPortal:Q09568 SMR:Q09568
STRING:Q09568 PaxDb:Q09568 EnsemblMetazoa:F48E8.6 GeneID:175748
KEGG:cel:CELE_F48E8.6 UCSC:F48E8.6 CTD:175748 WormBase:F48E8.6
InParanoid:Q09568 NextBio:889474 Uniprot:Q09568
Length = 848
Score = 550 (198.7 bits), Expect = 1.2e-52, P = 1.2e-52
Identities = 165/554 (29%), Positives = 274/554 (49%)
Query: 12 HALFVPKDRRIPKIRIQTRQLGNLLDKR-------IIVA-VDSWDCQSRYPFGHYVRVIG 63
+ LFV D R+P+I I + R + A + W +S Y G V+++G
Sbjct: 225 NVLFVATDSRVPRILIPKSDVDKEFFSRPKDFERFLYTAKITDWRAESVYADGRLVKLLG 284
Query: 64 EIGDRDTESEMVLIDNDIDARPFSTQVLACLPPLP---WSVSSEDLANPIRLDLRDLRVF 120
G+ DTE+E ++ ++ ID R FS + L LP W V + R D R VF
Sbjct: 285 MSGEIDTETERIVYEHQIDHREFSDECLESLPITTAENWKVPDAEFE--YRRDFRSDIVF 342
Query: 121 SVDPPGCKDIDDALH------CTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSV 174
++DP +D+DDALH C + E+GVHIADVT F+ GT LD AS+RG S
Sbjct: 343 TIDPKTARDLDDALHAKHIDDCDGKGTPGLEIGVHIADVTFFLKEGTELDKWASERGNST 402
Query: 175 YLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSY 234
YL + I MLP+ L E +CSL V+RL+FS +++++ EAE+ + +SVI+S L+Y
Sbjct: 403 YLSQTVIPMLPRILCEQLCSLNPGVDRLSFSTVFKMSYEAELYDVWFGRSVIRSRVKLAY 462
Query: 235 VEAQARMDDSR---LMDPLTTDLRNMNS-------------LAKKMRQRRIERGALTLAS 278
AQ +++ D L D+ + N+ +A+ +RQ+R + GAL +
Sbjct: 463 EHAQDFIENPEKDFTCDELP-DISDGNTPFEIKEKTLMLHRIAQVLRQKREDSGALRIEL 521
Query: 279 AEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSP 338
+KF +D E P + +Y+I+++N++VEEFML AN+ VA++I FP +LLR HP P
Sbjct: 522 PRLKFALD-EDKKPQGVSIYEIKDSNKLVEEFMLLANMEVAKKIAENFPEHALLRNHPPP 580
Query: 339 TKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLIRILATRCMTQAVYFC 398
++M++ + A +G LD +S L+ SL + G R+ C+ Q +
Sbjct: 581 KEKMIKDVAEQCARIGFPLDGRTSGLLSTSLRKYQGKS-------RL--DMCIRQVI--S 629
Query: 399 SGDLTPPEFHHY--GLAAPL--YTHFTSPIRRYADVV--VHRLLSASLGIYKLPSV-FQD 451
S + P + Y PL Y HF + Y + R + ++ + +
Sbjct: 630 SLTIKPMQQAKYFCTFEMPLSFYHHFALNVDHYTHFTSPIRRYPDVIVHRQLAAALGYNE 689
Query: 452 RPQ-LTSIADNLNYRHRNAQMASRGSVELHTLIYF-----RKRPTDTEARIVKIRSNGFI 505
R + + + R + ++AS+ + + ++YF + P +A ++ + F
Sbjct: 690 RSERVPEEIQEICTRCNDTKLASKEASDESAMLYFGVFIHQTGPMKCQAVVLGVMDLSFD 749
Query: 506 VFVPKFGIEGPVYL 519
V + ++G+ VY+
Sbjct: 750 VLIVEYGVVKRVYV 763
>UNIPROTKB|A0JN80 [details] [associations]
symbol:DIS3L "DIS3-like exonuclease 1" species:9913 "Bos
taurus" [GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0000175
GO:GO:0000177 EMBL:BC126555 IPI:IPI00701147 RefSeq:NP_001071624.1
UniGene:Bt.10856 ProteinModelPortal:A0JN80 STRING:A0JN80
PRIDE:A0JN80 GeneID:777771 KEGG:bta:777771 CTD:115752
eggNOG:COG0557 HOGENOM:HOG000191945 HOVERGEN:HBG059397
InParanoid:A0JN80 OrthoDB:EOG4229HZ NextBio:20924325
InterPro:IPR022966 PROSITE:PS01175 Uniprot:A0JN80
Length = 1053
Score = 529 (191.3 bits), Expect = 6.5e-50, P = 6.5e-50
Identities = 126/329 (38%), Positives = 190/329 (57%)
Query: 201 RLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSL 260
R A+ + +E + ++ + SV+K ++ ++R ++L + L +R + +
Sbjct: 583 RSAYKLFYEAAQD--LLDGNF--SVVKDIPEFKDLDEKSRQ--AKL-EELVWAIRKLTDI 635
Query: 261 AKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAE 320
A+ +R +R GAL L EV+ Q+D E + D+ Q E ++ V E M+ AN VA+
Sbjct: 636 ARHIRAKRDSCGALELEGVEVRIQLD-EKKNIHDLIPKQPLEVHETVAECMILANHWVAK 694
Query: 321 QILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG-DDPYF 379
+I FP +LLRRHP P +E L A A G +D S+KALADSLD A +DP
Sbjct: 695 KIWESFPHQALLRRHPPPHQEFFSELRECAKAKGFFIDTRSNKALADSLDNANDPNDPIV 754
Query: 380 NKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSAS 439
NKL+R +AT+ M+ A+YF +G EFHHYGLA YTHFTSPIRRY+D++VHRLL A+
Sbjct: 755 NKLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIIVHRLLMAA 814
Query: 440 LGIYKLPSVFQD---RPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEAR- 495
+ K + ++ L + ++N R+R AQ + + S EL +YF+ + +TE R
Sbjct: 815 ISKDKKMEIQENLFSNKDLEELCRHINNRNRAAQHSQKQSTELFQCMYFKDKDPETEERC 874
Query: 496 -----IVKIRSNGFIVFVPKFGIEGPVYL 519
I IR+NG +VF+P+FGI+G YL
Sbjct: 875 ISDGVIYSIRTNGVLVFIPRFGIKGAAYL 903
Score = 528 (190.9 bits), Expect = 5.3e-51, Sum P(2) = 5.3e-51
Identities = 118/263 (44%), Positives = 159/263 (60%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
L P D RIPKIRI T+Q L D R++V +DSW+ S YP GH+VRV+G IGD + E
Sbjct: 366 LVTPWDYRIPKIRISTQQAEALQDFRVVVRIDSWESTSMYPNGHFVRVLGRIGDLEGEIA 425
Query: 74 MVLIDNDIDARPFSTQVLACLP---PL-PWSVSSEDLANPIRLDLRDLR-VFSVDPPGCK 128
+L++N I PFS + +P P PW VSS++ R DLR VFS+DP GC+
Sbjct: 426 TILVENSISVVPFSEAQMCEMPVNTPENPWKVSSQEERE--REDLRKTHLVFSIDPSGCE 483
Query: 129 DIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPL 188
D+DD L AL +GN E+GVHIADVT+FV P + +D EA R T+ YL +RR DMLP L
Sbjct: 484 DVDDTLSVRALDNGNLELGVHIADVTHFVAPHSYIDIEARTRATTYYLADRRYDMLPAIL 543
Query: 189 TEDICSLRADVERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLM 247
+ D+CSL V+R A SV+WEL + EI Y +++I+S L Y AQ +D +
Sbjct: 544 SADVCSLLGGVDRYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQDLLDGNF-- 601
Query: 248 DPLTTDLRNMNSLAKKMRQRRIE 270
+ D+ L +K RQ ++E
Sbjct: 602 -SVVKDIPEFKDLDEKSRQAKLE 623
Score = 38 (18.4 bits), Expect = 5.3e-51, Sum P(2) = 5.3e-51
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 300 IREANQMVEEFMLAANVSV 318
++E + VEE LA V+V
Sbjct: 997 VKEVTRSVEEAQLAQEVAV 1015
>UNIPROTKB|F1MEA6 [details] [associations]
symbol:DIS3L "DIS3-like exonuclease 1" species:9913 "Bos
taurus" [GO:0019899 "enzyme binding" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005813 "centrosome" evidence=IEA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0005886 GO:GO:0005813
GO:GO:0003723 GO:GO:0016075 GO:GO:0000175 GO:GO:0000177
IPI:IPI00701147 InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:DAAA02027893
Ensembl:ENSBTAT00000000481 Uniprot:F1MEA6
Length = 1053
Score = 529 (191.3 bits), Expect = 6.5e-50, P = 6.5e-50
Identities = 126/329 (38%), Positives = 190/329 (57%)
Query: 201 RLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSL 260
R A+ + +E + ++ + SV+K ++ ++R ++L + L +R + +
Sbjct: 583 RSAYKLFYEAAQD--LLDGNF--SVVKDIPEFKDLDEKSRQ--AKL-EELVWAIRKLTDI 635
Query: 261 AKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAE 320
A+ +R +R GAL L EV+ Q+D E + D+ Q E ++ V E M+ AN VA+
Sbjct: 636 ARHIRAKRDSCGALELEGVEVRIQLD-EKKNIHDLIPKQPLEVHETVAECMILANHWVAK 694
Query: 321 QILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG-DDPYF 379
+I FP +LLRRHP P +E L A A G +D S+KALADSLD A +DP
Sbjct: 695 KIWESFPHQALLRRHPPPHQEFFSELRECAKAKGFFIDTRSNKALADSLDNANDPNDPIV 754
Query: 380 NKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSAS 439
NKL+R +AT+ M+ A+YF +G EFHHYGLA YTHFTSPIRRY+D++VHRLL A+
Sbjct: 755 NKLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIIVHRLLMAA 814
Query: 440 LGIYKLPSVFQD---RPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEAR- 495
+ K + ++ L + ++N R+R AQ + + S EL +YF+ + +TE R
Sbjct: 815 ISKDKKMEIQENLFSNKDLEELCRHINNRNRAAQHSQKQSTELFQCMYFKDKDPETEERC 874
Query: 496 -----IVKIRSNGFIVFVPKFGIEGPVYL 519
I IR+NG +VF+P+FGI+G YL
Sbjct: 875 ISDGVIYSIRTNGVLVFIPRFGIKGAAYL 903
Score = 528 (190.9 bits), Expect = 5.3e-51, Sum P(2) = 5.3e-51
Identities = 118/263 (44%), Positives = 159/263 (60%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
L P D RIPKIRI T+Q L D R++V +DSW+ S YP GH+VRV+G IGD + E
Sbjct: 366 LVTPWDYRIPKIRISTQQAEALQDFRVVVRIDSWESTSMYPNGHFVRVLGRIGDLEGEIA 425
Query: 74 MVLIDNDIDARPFSTQVLACLP---PL-PWSVSSEDLANPIRLDLRDLR-VFSVDPPGCK 128
+L++N I PFS + +P P PW VSS++ R DLR VFS+DP GC+
Sbjct: 426 TILVENSISVVPFSEAQMCEMPVNTPENPWKVSSQEERE--REDLRKTHLVFSIDPSGCE 483
Query: 129 DIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPL 188
D+DD L AL +GN E+GVHIADVT+FV P + +D EA R T+ YL +RR DMLP L
Sbjct: 484 DVDDTLSVRALDNGNLELGVHIADVTHFVAPHSYIDIEARTRATTYYLADRRYDMLPAIL 543
Query: 189 TEDICSLRADVERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLM 247
+ D+CSL V+R A SV+WEL + EI Y +++I+S L Y AQ +D +
Sbjct: 544 SADVCSLLGGVDRYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQDLLDGNF-- 601
Query: 248 DPLTTDLRNMNSLAKKMRQRRIE 270
+ D+ L +K RQ ++E
Sbjct: 602 -SVVKDIPEFKDLDEKSRQAKLE 623
Score = 38 (18.4 bits), Expect = 5.3e-51, Sum P(2) = 5.3e-51
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 300 IREANQMVEEFMLAANVSV 318
++E + VEE LA V+V
Sbjct: 997 VKEVTRSVEEAQLAQEVAV 1015
>UNIPROTKB|F1NKN5 [details] [associations]
symbol:LOC100857630 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0005886 GO:GO:0005813
GO:GO:0003723 GO:GO:0016075 GO:GO:0000175 GO:GO:0000177
InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:AADN02038918 EMBL:AADN02038919
EMBL:AADN02038920 IPI:IPI00571818 Ensembl:ENSGALT00000012364
Uniprot:F1NKN5
Length = 1082
Score = 533 (192.7 bits), Expect = 2.6e-50, P = 2.6e-50
Identities = 117/263 (44%), Positives = 163/263 (61%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
L P D RIPKIRI T+Q L + R++V +DSW+ S YP GH+VRV+G IGD + E
Sbjct: 391 LVTPWDYRIPKIRISTQQAEALQEYRVVVRIDSWESTSVYPNGHFVRVLGRIGDLEGEIA 450
Query: 74 MVLIDNDIDARPFSTQVLACLPPL----PWSVSSEDLANPIRLDLRDLR-VFSVDPPGCK 128
+L++N I PFS + +P PW V+ E+ RL+LRD +FS+DP GC+
Sbjct: 451 AILVENSITVAPFSEIQMNEMPVSSSKNPWKVNPEEEKK--RLNLRDTHLIFSIDPKGCE 508
Query: 129 DIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPL 188
D+DDAL L +GN E+GVHIADVT FV + D EA R T+ YL +RR DMLP L
Sbjct: 509 DVDDALSVRTLPNGNLELGVHIADVTYFVAANSYTDIEARARATTYYLADRRYDMLPSVL 568
Query: 189 TEDICSLRADVERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMD-DSRL 246
+ DICSL + V+R A SV+WEL E+ EI+ Y KS+I+S L Y AQ +D D+ +
Sbjct: 569 SADICSLLSGVDRYAVSVLWELERESYEILRVCYNKSIIRSAYKLVYEVAQGLLDGDTSV 628
Query: 247 MDPLTTDLRNMNSLAKKMRQRRI 269
+D D+ + L ++ R++++
Sbjct: 629 VD----DILELKDLDERTREKKL 647
Score = 501 (181.4 bits), Expect = 7.2e-47, P = 7.2e-47
Identities = 124/337 (36%), Positives = 192/337 (56%)
Query: 192 ICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLT 251
+C ++ + R A+ +++E+ A+ + T SV+ L ++ + R + +L + L
Sbjct: 600 VCYNKSII-RSAYKLVYEV---AQGLLDGDT-SVVDDILELKDLDERTR--EKKLSE-LV 651
Query: 252 TDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFM 311
+ + +A+ +R +R GAL L E++ Q+D + + D+ Q E ++ V E M
Sbjct: 652 WAISKLTDIARHIRAKRDSCGALELEGVEIRVQLDDKKNIH-DLIPKQPLEVHETVAECM 710
Query: 312 LAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDR 371
+ AN VA++I FP +LLR+HP P +E L A+A G +D S+KALA+SLD+
Sbjct: 711 ILANHWVAKKISESFPHQALLRQHPPPRQEFFTDLQECASAKGFAIDTRSNKALAESLDK 770
Query: 372 AVGD-DPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADV 430
A DP NKL+R +AT+ M+ A+YF +G + EFHHYGLA YTHFTSPIRRYAD+
Sbjct: 771 ANDPLDPIVNKLLRSMATQAMSNALYFSTGSCSEEEFHHYGLALDKYTHFTSPIRRYADI 830
Query: 431 VVHRLLSASLG--IYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKR 488
+VHRLL A+ L L ++N R+R AQ A + S EL +YF+ +
Sbjct: 831 IVHRLLMAAFRKETKDLKDKLFSNKDLEDPRKHINNRNRAAQHAQKQSTELFQCMYFKDK 890
Query: 489 PTDTEAR------IVKIRSNGFIVFVPKFGIEGPVYL 519
+T+ R I IR+NG +VFVP++GI+G Y+
Sbjct: 891 SPETDERCIADGVIYSIRTNGVLVFVPRYGIKGAAYM 927
>RGD|1308959 [details] [associations]
symbol:Dis3l "DIS3 mitotic control homolog (S. cerevisiae)-like"
species:10116 "Rattus norvegicus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO;ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISO;ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0005886 "plasma
membrane" evidence=IEA;ISO] [GO:0016075 "rRNA catabolic process"
evidence=IEA;ISO] [GO:0019899 "enzyme binding" evidence=IEA;ISO]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 RGD:1308959
GO:GO:0005886 GO:GO:0005813 GO:GO:0003723 GO:GO:0016075
GO:GO:0000175 GO:GO:0000177 CTD:115752 eggNOG:COG0557
HOGENOM:HOG000191945 HOVERGEN:HBG059397 OrthoDB:EOG4229HZ
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
EMBL:BC085932 IPI:IPI00366657 RefSeq:NP_001008381.1
UniGene:Rn.24884 ProteinModelPortal:Q5U2P0 STRING:Q5U2P0
PRIDE:Q5U2P0 Ensembl:ENSRNOT00000014071 GeneID:363077
KEGG:rno:363077 UCSC:RGD:1308959 InParanoid:Q5U2P0 NextBio:682358
Genevestigator:Q5U2P0 Uniprot:Q5U2P0
Length = 1054
Score = 525 (189.9 bits), Expect = 1.8e-49, P = 1.8e-49
Identities = 116/264 (43%), Positives = 161/264 (60%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
L P D RIPKIRI T+Q L D R++V +DSW+ S YP GH+VRV+G IGD + E
Sbjct: 366 LVTPWDYRIPKIRISTQQAEALQDFRVVVRIDSWETTSVYPNGHFVRVLGRIGDLEGEIA 425
Query: 74 MVLIDNDIDARPFSTQVLACLPPL-----PWSVSSEDLANPIRLDLRDLR-VFSVDPPGC 127
+L++N I+ PFS + C P+ PW VS ++ R DLR VFS+DP GC
Sbjct: 426 TILVENSINVVPFS-EAQMCEMPVNTAENPWKVSPKEEQE--RRDLRSTHLVFSIDPKGC 482
Query: 128 KDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKP 187
+D+DDAL L++GN E+GVHIADVT+FV P + +D EA R T+ YL +RR DMLP
Sbjct: 483 EDVDDALSVRTLNNGNLELGVHIADVTHFVAPNSYIDVEARTRATTYYLADRRYDMLPSI 542
Query: 188 LTEDICSLRADVERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRL 246
L+ D+CSL V+R A SV+WEL + EI Y +++I+S L Y AQ +D +
Sbjct: 543 LSADLCSLLGGVDRYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQELLDGNF- 601
Query: 247 MDPLTTDLRNMNSLAKKMRQRRIE 270
+ D+ +L ++ RQ ++E
Sbjct: 602 --SIVDDIPEFKTLEEQNRQAKLE 623
Score = 523 (189.2 bits), Expect = 2.9e-49, P = 2.9e-49
Identities = 134/375 (35%), Positives = 202/375 (53%)
Query: 201 RLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSL 260
R A+ + +E E ++ + S++ +E Q R ++L + L + + +
Sbjct: 583 RSAYKLFYEAAQE--LLDGNF--SIVDDIPEFKTLEEQNRQ--AKL-EELVWAIGKLTDI 635
Query: 261 AKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAE 320
A+ +R +R GAL L EV+ Q+D + + D+ Q E ++ V E M+ AN VA+
Sbjct: 636 ARHIRAKRDRCGALELEGVEVRVQLDDKKNIH-DLIPKQPLEVHETVAECMILANHWVAK 694
Query: 321 QILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG-DDPYF 379
+I FP +LLR+HP P +E L A A G +D S+K LADSLD A DP
Sbjct: 695 KIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLADSLDSANDPSDPLV 754
Query: 380 NKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSAS 439
NKL+R +AT+ M+ A+YF +G EFHHYGLA YTHFTSPIRRY+D+VVHRLL A+
Sbjct: 755 NKLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAA 814
Query: 440 LGIYKLPSVFQD---RPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEARI 496
+ K + ++ L + ++N R+R AQ + + S EL +YF+ R +TE R
Sbjct: 815 ISKDKKVEIKENLFSNKNLEELCRHINNRNRAAQRSQKQSTELFQCMYFKDRDPETEERC 874
Query: 497 V------KIRSNGFIVFVPKFGIEGPVYLTPR-------GQKGSGDWYVDEQQQKIVKMD 543
V IR+NG +VF+P+FGI+G YL + G +GS +W Q+ K+
Sbjct: 875 VVDGIIYSIRTNGVLVFIPRFGIKGAAYLKNKDGLVISCGPEGSSEWKPGSLQRSQNKII 934
Query: 544 GNLSYSVLQTVNIHM 558
+ Q+V H+
Sbjct: 935 STTAGG--QSVTFHL 947
>MGI|MGI:2143272 [details] [associations]
symbol:Dis3l "DIS3 mitotic control homolog (S.
cerevisiae)-like" species:10090 "Mus musculus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISO] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016075 "rRNA catabolic process" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=ISO] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 MGI:MGI:2143272 GO:GO:0005886 GO:GO:0005813
GO:GO:0003723 GO:GO:0016075 GO:GO:0000175 GO:GO:0000177 CTD:115752
eggNOG:COG0557 HOGENOM:HOG000191945 HOVERGEN:HBG059397
OrthoDB:EOG4229HZ InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
EMBL:AK173310 EMBL:AK029974 EMBL:BC056939 IPI:IPI00223964
IPI:IPI00881768 RefSeq:NP_001001295.2 RefSeq:NP_001171255.1
RefSeq:NP_766107.1 UniGene:Mm.268341 ProteinModelPortal:Q8C0S1
SMR:Q8C0S1 STRING:Q8C0S1 PhosphoSite:Q8C0S1 PaxDb:Q8C0S1
PRIDE:Q8C0S1 Ensembl:ENSMUST00000068367 Ensembl:ENSMUST00000113890
Ensembl:ENSMUST00000120760 Ensembl:ENSMUST00000168844 GeneID:213550
KEGG:mmu:213550 UCSC:uc009qbu.2 UCSC:uc009qbw.2
GeneTree:ENSGT00530000063106 InParanoid:Q8C0S1 NextBio:374039
Bgee:Q8C0S1 CleanEx:MM_DIS3L Genevestigator:Q8C0S1 Uniprot:Q8C0S1
Length = 1053
Score = 524 (189.5 bits), Expect = 2.2e-49, P = 2.2e-49
Identities = 133/375 (35%), Positives = 204/375 (54%)
Query: 201 RLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSL 260
R A+ + +E E ++ + S++ L ++ Q++ ++L + L + + +
Sbjct: 583 RSAYKLFYEAAQE--LLDGNF--SIVDDIPELKALDKQSQQ--AKL-EELVWAIGKLTDI 635
Query: 261 AKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAE 320
A+ +R +R GAL L EV+ Q+D + + D+ Q E ++ V E M+ AN VA+
Sbjct: 636 ARHIRAKRDRCGALELEGVEVRVQLD-DKKNIRDLIPKQPLEVHETVAECMILANHWVAK 694
Query: 321 QILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGD-DPYF 379
+I FP +LLR+HP P +E L A A G +D S+K LADSLD A DP
Sbjct: 695 KIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLADSLDSANDPKDPLV 754
Query: 380 NKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSAS 439
NKL+R +AT+ M+ A+YF +G EFHHYGLA YTHFTSPIRRY+D+VVHRLL A+
Sbjct: 755 NKLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAA 814
Query: 440 LGIYKLPSVFQD---RPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEAR- 495
+ K + ++ L + ++N R+R AQ + + S EL +YF+ R +TE R
Sbjct: 815 ISKDKKMEIKENLFSNKNLEELCRHINNRNRAAQRSQKQSTELFQCMYFKDRDAETEERC 874
Query: 496 -----IVKIRSNGFIVFVPKFGIEGPVYLTPR-------GQKGSGDWYVDEQQQKIVKMD 543
I IR+NG +VF+P+FGI+G YL + G +GS +W Q+ K+
Sbjct: 875 IADGVIYSIRTNGVLVFIPRFGIKGAAYLKNKDSLVISCGPEGSSEWKPGSLQRSQNKII 934
Query: 544 GNLSYSVLQTVNIHM 558
+ Q+V H+
Sbjct: 935 STTAGG--QSVTFHL 947
Score = 522 (188.8 bits), Expect = 3.7e-49, P = 3.7e-49
Identities = 115/263 (43%), Positives = 160/263 (60%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
L P D RIPKIRI T+Q L D R++V +DSW+ S YP GH+VRV+G IGD + E
Sbjct: 366 LVTPWDYRIPKIRISTQQAEALQDFRVVVRIDSWEATSVYPNGHFVRVLGRIGDLEGEIA 425
Query: 74 MVLIDNDIDARPFSTQVLACLP---PL-PWSVSSEDLANPIRLDLRDLR-VFSVDPPGCK 128
+L++N I PFS + +P P PW VS ++ R DLR VFS+DP GC+
Sbjct: 426 TILVENSISVVPFSEAQMCEMPVNTPENPWKVSPKEEQE--RKDLRTTHLVFSIDPKGCE 483
Query: 129 DIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPL 188
D+DD L L++GN E+GVHIADVT+FV P + +D EA R T+ YL +RR DMLP L
Sbjct: 484 DVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDVEARTRATTYYLADRRYDMLPSIL 543
Query: 189 TEDICSLRADVERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLM 247
+ D+CSL V+R A SV+WEL + EI Y +++I+S L Y AQ +D +
Sbjct: 544 SADLCSLLGGVDRYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQELLDGNF-- 601
Query: 248 DPLTTDLRNMNSLAKKMRQRRIE 270
+ D+ + +L K+ +Q ++E
Sbjct: 602 -SIVDDIPELKALDKQSQQAKLE 623
>CGD|CAL0003016 [details] [associations]
symbol:SSD1 species:5476 "Candida albicans" [GO:0020012
"evasion or tolerance of host immune response" evidence=IMP]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005935 "cellular bud neck"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0032153 "cell division site" evidence=IEA]
[GO:0060237 "regulation of fungal-type cell wall organization"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0034613 "cellular protein localization"
evidence=IEA] [GO:2000115 "regulation of maintenance of bipolar
cell polarity regulating cell shape" evidence=IEA] [GO:0000900
"translation repressor activity, nucleic acid binding"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 CGD:CAL0003016
GO:GO:0009405 GO:GO:0003723 GO:GO:0004540 EMBL:AACQ01000012
GO:GO:0020012 RefSeq:XP_721868.1 ProteinModelPortal:Q5AK62
STRING:Q5AK62 GeneID:3636520 KEGG:cal:CaO19.3959 Uniprot:Q5AK62
Length = 1274
Score = 526 (190.2 bits), Expect = 2.3e-49, P = 2.3e-49
Identities = 150/529 (28%), Positives = 270/529 (51%)
Query: 15 FVPKDRRIPKIRIQTRQ-----LGN---LLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIG 66
F P D+++P I I T Q + N D+ + ++ W S +PFG V +G I
Sbjct: 564 FKPTDKKVPLIAIPTEQAPKDFVENHEKYADRLFVASIKRWPITSLHPFGTLVSNLGPID 623
Query: 67 DRDTESEMVLIDNDI--DARPFSTQ---VLACLPPLPWSVSSEDLANPIRLDLRDLRVFS 121
+TE + +L DN+ D P V LP S+ E N R + + + +
Sbjct: 624 SPETEIDSILRDNNFLCDEYPDDDNDDIVSVNAYDLP-SIEPE-FENTQREEYLNDYIIA 681
Query: 122 VDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRI 181
G + +D ALH +S+ E+G H+AD+ F+ PG+ LD ++ KR +SV+L ++ +
Sbjct: 682 FTQNG-EFVDHALHVKRISNTKIELGFHVADIAYFIKPGSSLDRKSKKRSSSVFLPQKTV 740
Query: 182 DMLPKPLTEDICSLRADVERLAFSVIWEL-TPEAEIISTRYTKSVIKSCAALSYVEAQAR 240
++ PK + + I S + + + LA SV++E+ T E+ +SVI ++Y +A
Sbjct: 741 NLFPKQVNK-IVSFKENEKNLAVSVVFEIDTSNFEVEDLYIHESVIVPKQLVTY-DAFDT 798
Query: 241 MDDSRLMDPL---TTD-LRNMNSLAKKMRQRRIERGALTLA-SAEVKFQIDTETHDPLDI 295
+ + +D + T+D ++ + +AK+ R+ R+ +L + + + Q+D E LD+
Sbjct: 799 ILSGQSVDSISSATSDYVKTFSLIAKEFRRHRLSNRSLGITPNLTLLDQLDDEKVR-LDL 857
Query: 296 GMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGL 355
+++ A ++ E N ++A ++ ++LRRHP PT + +E +R A ++G
Sbjct: 858 NIFKDSLAFDVISEISHKVNSAIAAKVHAGLGDQAILRRHPLPTLQKMETFVRKATSLGF 917
Query: 356 NLDVSSSKALADSLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAP 415
+D ++S L +S+ + DDP K + L +CM++ Y+ +G + HY P
Sbjct: 918 KIDTTTSSTLQNSILKI--DDPVKRKCVETLLYKCMSRGRYYVAGKQDTDSYAHYYFNLP 975
Query: 416 LYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRG 475
LYTHFT+P+RRYAD++VHR L A L ++ +D L +I D N++ A A
Sbjct: 976 LYTHFTAPLRRYADLIVHRQLKAVLN-KQVED--KDLDSLKAITDYCNFKKDCAANAQEQ 1032
Query: 476 SVELHTLIYFRKRPTDTEAR------IVKIRSNGFIVFVPKFGIEGPVY 518
++ L L ++T + +V++ + F VF+P+FG+E V+
Sbjct: 1033 AIHL-LLSQTINEMSETAGQLLCMGTVVQVYESSFDVFIPEFGVEKRVH 1080
>UNIPROTKB|Q5AK62 [details] [associations]
symbol:SSD1 "Putative uncharacterized protein SSD1"
species:237561 "Candida albicans SC5314" [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0020012 "evasion or tolerance of host immune
response" evidence=IMP] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 CGD:CAL0003016 GO:GO:0009405 GO:GO:0003723
GO:GO:0004540 EMBL:AACQ01000012 GO:GO:0020012 RefSeq:XP_721868.1
ProteinModelPortal:Q5AK62 STRING:Q5AK62 GeneID:3636520
KEGG:cal:CaO19.3959 Uniprot:Q5AK62
Length = 1274
Score = 526 (190.2 bits), Expect = 2.3e-49, P = 2.3e-49
Identities = 150/529 (28%), Positives = 270/529 (51%)
Query: 15 FVPKDRRIPKIRIQTRQ-----LGN---LLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIG 66
F P D+++P I I T Q + N D+ + ++ W S +PFG V +G I
Sbjct: 564 FKPTDKKVPLIAIPTEQAPKDFVENHEKYADRLFVASIKRWPITSLHPFGTLVSNLGPID 623
Query: 67 DRDTESEMVLIDNDI--DARPFSTQ---VLACLPPLPWSVSSEDLANPIRLDLRDLRVFS 121
+TE + +L DN+ D P V LP S+ E N R + + + +
Sbjct: 624 SPETEIDSILRDNNFLCDEYPDDDNDDIVSVNAYDLP-SIEPE-FENTQREEYLNDYIIA 681
Query: 122 VDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRI 181
G + +D ALH +S+ E+G H+AD+ F+ PG+ LD ++ KR +SV+L ++ +
Sbjct: 682 FTQNG-EFVDHALHVKRISNTKIELGFHVADIAYFIKPGSSLDRKSKKRSSSVFLPQKTV 740
Query: 182 DMLPKPLTEDICSLRADVERLAFSVIWEL-TPEAEIISTRYTKSVIKSCAALSYVEAQAR 240
++ PK + + I S + + + LA SV++E+ T E+ +SVI ++Y +A
Sbjct: 741 NLFPKQVNK-IVSFKENEKNLAVSVVFEIDTSNFEVEDLYIHESVIVPKQLVTY-DAFDT 798
Query: 241 MDDSRLMDPL---TTD-LRNMNSLAKKMRQRRIERGALTLA-SAEVKFQIDTETHDPLDI 295
+ + +D + T+D ++ + +AK+ R+ R+ +L + + + Q+D E LD+
Sbjct: 799 ILSGQSVDSISSATSDYVKTFSLIAKEFRRHRLSNRSLGITPNLTLLDQLDDEKVR-LDL 857
Query: 296 GMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGL 355
+++ A ++ E N ++A ++ ++LRRHP PT + +E +R A ++G
Sbjct: 858 NIFKDSLAFDVISEISHKVNSAIAAKVHAGLGDQAILRRHPLPTLQKMETFVRKATSLGF 917
Query: 356 NLDVSSSKALADSLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAP 415
+D ++S L +S+ + DDP K + L +CM++ Y+ +G + HY P
Sbjct: 918 KIDTTTSSTLQNSILKI--DDPVKRKCVETLLYKCMSRGRYYVAGKQDTDSYAHYYFNLP 975
Query: 416 LYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRG 475
LYTHFT+P+RRYAD++VHR L A L ++ +D L +I D N++ A A
Sbjct: 976 LYTHFTAPLRRYADLIVHRQLKAVLN-KQVED--KDLDSLKAITDYCNFKKDCAANAQEQ 1032
Query: 476 SVELHTLIYFRKRPTDTEAR------IVKIRSNGFIVFVPKFGIEGPVY 518
++ L L ++T + +V++ + F VF+P+FG+E V+
Sbjct: 1033 AIHL-LLSQTINEMSETAGQLLCMGTVVQVYESSFDVFIPEFGVEKRVH 1080
>TIGR_CMR|SPO_3330 [details] [associations]
symbol:SPO_3330 "ribonuclease R" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0006401 "RNA catabolic process" evidence=ISS]
[GO:0008997 "ribonuclease R activity" evidence=ISS] HAMAP:MF_01895
InterPro:IPR001900 InterPro:IPR003029 InterPro:IPR004476
InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126
SMART:SM00955 GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003723 GO:GO:0090305 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0016070 InterPro:IPR022967 SMART:SM00316
InterPro:IPR022966 PROSITE:PS01175 GO:GO:0008859 TIGRFAMs:TIGR00358
KO:K12573 TIGRFAMs:TIGR02063 RefSeq:YP_168526.1
ProteinModelPortal:Q5LN82 GeneID:3193934 KEGG:sil:SPO3330
PATRIC:23380111 HOGENOM:HOG000071121 OMA:NLRRYAH
ProtClustDB:CLSK934129 Uniprot:Q5LN82
Length = 752
Score = 499 (180.7 bits), Expect = 2.2e-47, P = 2.2e-47
Identities = 148/465 (31%), Positives = 225/465 (48%)
Query: 111 RLDLRDLRVFSVDPPGCKDIDDALHCTA----LSSGNFEVGVHIADVTNFVHPGTPLDDE 166
R DLRD+ + ++DP +D DDA A + G + V IADV +V G+ LD E
Sbjct: 249 RQDLRDMALVTIDPSDARDHDDACFAHADDDPKNPGGHVIWVAIADVAAYVRAGSALDRE 308
Query: 167 ASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVI 226
A KRG S Y +R + MLP L+ D+CSL V R +V ++ + I R+ + ++
Sbjct: 309 ARKRGNSTYFPDRVVPMLPDRLSGDLCSLHEGVPRACIAVRMQIDAQGNKIGHRFVRGMM 368
Query: 227 KSCAALSYVEAQARMDDSR--LMDPLTTD-LRNMNSLAKKMRQRRIERGALTLASAEVKF 283
+S A+L+Y E Q +D S PL + L + + K + R R L L E +
Sbjct: 369 RSVASLNYQEVQDAIDGSPNDKTGPLLDEVLTPLYAAYKALDAERDRRQPLDLDLPERRI 428
Query: 284 QIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQIL-RQFPLCSLLRRHPSPTKEM 342
++ + H + +A++++EEFM+ ANV+ AE ++ ++ PL L R H P E
Sbjct: 429 VLNDKGHVE-SVAFRDRLDAHKLIEEFMILANVAAAETLIAKRVPL--LFRVHEEPAPEK 485
Query: 343 LEPLLRTAAAVGLNL---DVSSSKALADSLDRAVGDDPYFNKLIRILATRCMTQAVYFCS 399
LE L TA A GL L V ++ L L +A G D +LI I R M QA Y
Sbjct: 486 LEALRETAQASGLTLAKGQVLQTRHLNALLHQAAGTDEA--ELINISTLRSMAQAYY--- 540
Query: 400 GDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIA 459
P F H+GLA Y HFTSPIRRY+D++VHR L + G + QL IA
Sbjct: 541 ---NPENFGHFGLALKNYAHFTSPIRRYSDLIVHRGLIKAHGWGDDGLTADEIEQLDRIA 597
Query: 460 DNLNYRHRNAQMASRGSVELHTLIYFRKRP-TDTEARIVKIRSNGFIVFVPKFGIEGPVY 518
+++ R + MA R + + + Y +R + RI I G V + + G +G
Sbjct: 598 THISDTERRSMMAERDTTDRYLAAYLSERVGNEFSGRISGIARFGAFVKLDETGADG--- 654
Query: 519 LTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEP 563
L P G ++ D + ++ + L ++ Q V + + P
Sbjct: 655 LVPVRSLGREFFHFDREAGTLMGSETGLLIAIGQRVTVRLAQASP 699
>TIGR_CMR|CBU_1091 [details] [associations]
symbol:CBU_1091 "ribonuclease R" species:227377 "Coxiella
burnetii RSA 493" [GO:0008997 "ribonuclease R activity"
evidence=ISS] HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0090305 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070 InterPro:IPR022967
SMART:SM00316 GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206
TIGRFAMs:TIGR00358 HOGENOM:HOG000071120 KO:K12573 OMA:FGFLIPD
TIGRFAMs:TIGR02063 RefSeq:NP_820090.2 ProteinModelPortal:Q83CM3
PRIDE:Q83CM3 GeneID:1208992 KEGG:cbu:CBU_1091 PATRIC:17930913
ProtClustDB:CLSK914532 BioCyc:CBUR227377:GJ7S-1084-MONOMER
Uniprot:Q83CM3
Length = 749
Score = 495 (179.3 bits), Expect = 6.1e-47, P = 6.1e-47
Identities = 151/514 (29%), Positives = 256/514 (49%)
Query: 15 FV-PKDRRIPK-IRIQTRQLGNLLDKRIIVA-VDSWDCQSRYPFGHYVRVIGEIGDRDTE 71
FV P + I + I I Q G + +VA + + R G + ++G+ E
Sbjct: 181 FVDPNHKLITQDILIPPGQQGEAKTGQFVVAEITVQPTKRRQAMGRIIEILGDQLTPGME 240
Query: 72 SEMVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDID 131
E+ + +++ R + +VL LP + D R DLR L ++D +D D
Sbjct: 241 VELAIRTHELPYR-WPNEVLREAKKLPVELMEYDKKG--RKDLRKLPFMTIDGEDARDFD 297
Query: 132 DALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTED 191
DA++C + SSG +++ V IADV+++V + LD E RG SVY + I MLP+ L+ +
Sbjct: 298 DAVYCESKSSG-WKLYVAIADVSHYVSRESALDKEGQLRGNSVYFPSKVIPMLPEALSNN 356
Query: 192 ICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLM-DPL 250
+CSL + +RLA LT + ++ ++ ++VI S A L+Y + A + + + +
Sbjct: 357 LCSLVPNKDRLAIVCEIHLTAKGKVSKYQFYEAVIHSHARLTYTQVAAMLRGEKTKNEEM 416
Query: 251 TTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEF 310
++N++ L + + ++RI RGA+ + E + Q D + + + + EA++++EE
Sbjct: 417 LPHIKNLDQLYQNLLRQRINRGAIEFETTETRIQFDQKGKIKRIVPVVR-NEAHRIIEEC 475
Query: 311 MLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD--S 368
ML ANVS A L++ + +L R H P ++ L L + A GL L D
Sbjct: 476 MLVANVS-ASHFLQEKNIPTLYRVHEGPDEQKLHDLKQFLRAFGLRLTGGDKPTPMDYAK 534
Query: 369 LDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYA 428
L + P + L++ + R + QA+Y TP + H+GL+ Y HFTSPIRRY
Sbjct: 535 LLLRIEKRPDAH-LLQTVMLRSLRQAIY------TPEDGGHFGLSYERYCHFTSPIRRYP 587
Query: 429 DVVVHRLLSASLGIYKLPSVFQ-DRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRK 487
D++VHR + +L K P F D P+L + ++ + R A A+R +V+ Y
Sbjct: 588 DLLVHRGIRHALQ-KKSPKKFHYDNPKLGELGEHCSMTERRADRATREAVDWLKCEYMMN 646
Query: 488 RPTDTEA-RIVKIRSNGFIVFVPKFGIEGPVYLT 520
+ A IV + G V + + IEG V++T
Sbjct: 647 KIGQAYAGHIVDVTGFGVFVQLDQIYIEGLVHIT 680
>UNIPROTKB|F1PK78 [details] [associations]
symbol:DIS3L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0004540 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:AAEX03016225
Ensembl:ENSCAFT00000027369 Uniprot:F1PK78
Length = 1024
Score = 498 (180.4 bits), Expect = 1.3e-46, P = 1.3e-46
Identities = 124/330 (37%), Positives = 185/330 (56%)
Query: 201 RLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSL 260
R A+ + +E E ++ T V++ L ++ ++R ++L + L L + +
Sbjct: 552 RSAYKLFYEAAQE--LLDGNVT--VVEDIPELKNLDTKSRQ--AKL-EELVWALGKLTDI 604
Query: 261 AKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAE 320
A+ +R +R GAL L EV+ Q+D E + D+ Q E ++ V E M+ AN VA
Sbjct: 605 ARHIRAKRDRCGALELEGVEVRVQLD-EKKNIHDLIPKQPLEVHETVAECMILANHWVAR 663
Query: 321 QILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG-DDPYF 379
+I FP +LLR+HP P +E L A A G +D S+K LADSLD A +DP
Sbjct: 664 KIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLADSLDNANDPNDPIV 723
Query: 380 NKLIRILATRCMTQAVYFCSGDLTPPEFHHY-GLAAPLYTHFTSPIRRYADVVVHRLLSA 438
N+L+R +AT+ M+ A+YF +G EFHHY GLA YTHFTSPIRRY+D+VVHRLL A
Sbjct: 724 NRLLRSMATQAMSNALYFSTGSCAEEEFHHYEGLALDKYTHFTSPIRRYSDIVVHRLLMA 783
Query: 439 SLGIYKLPSVFQD---RPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEAR 495
++ K + + L + ++N R+R AQ + + S EL +YF+ + + E R
Sbjct: 784 AISKDKKMEIKDNLLSNKDLEELCRHINNRNRAAQHSQKQSTELFQCMYFKDKDPENEER 843
Query: 496 ------IVKIRSNGFIVFVPKFGIEGPVYL 519
I IR+NG +VF+P+FGI+G YL
Sbjct: 844 CISDGVIYSIRTNGVLVFIPRFGIKGAAYL 873
Score = 347 (127.2 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
Identities = 77/178 (43%), Positives = 109/178 (61%)
Query: 95 PPLPWSVSSEDLANPIRLDLRDLR-VFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADV 153
P PW VS E+ R DLR+ VFS+DP GC+D+DD L L++G+ E+GVHIADV
Sbjct: 420 PGNPWKVSPEEERE--RKDLRETHLVFSIDPKGCEDVDDTLSVRTLANGSLELGVHIADV 477
Query: 154 TNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPE 213
T+FV P + +D EA R T+ YL +RR DMLP L+ D+CSL V+R A SVIWEL
Sbjct: 478 THFVPPSSYIDTEARTRATTYYLADRRYDMLPSILSADLCSLLGGVDRYAVSVIWELDRT 537
Query: 214 A-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIE 270
+ EI + + +++I+S L Y AQ +D + + D+ + +L K RQ ++E
Sbjct: 538 SYEIKNVWFGRTIIRSAYKLFYEAAQELLDGNVTV---VEDIPELKNLDTKSRQAKLE 592
Score = 37 (18.1 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 300 IREANQMVEEFMLAANVSV 318
++E + VEE LA V V
Sbjct: 967 VKEVTRSVEEAQLAQEVKV 985
>TIGR_CMR|CPS_4617 [details] [associations]
symbol:CPS_4617 "ribonuclease R" species:167879 "Colwellia
psychrerythraea 34H" [GO:0008997 "ribonuclease R activity"
evidence=ISS] [GO:0016075 "rRNA catabolic process" evidence=ISS]
HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0090305 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070 InterPro:IPR022967
SMART:SM00316 eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206 TIGRFAMs:TIGR00358
HOGENOM:HOG000071120 KO:K12573 OMA:FGFLIPD TIGRFAMs:TIGR02063
RefSeq:YP_271264.1 ProteinModelPortal:Q47VA8 STRING:Q47VA8
GeneID:3520956 KEGG:cps:CPS_4617 PATRIC:21472057
BioCyc:CPSY167879:GI48-4626-MONOMER Uniprot:Q47VA8
Length = 826
Score = 477 (173.0 bits), Expect = 1.1e-44, P = 1.1e-44
Identities = 154/574 (26%), Positives = 270/574 (47%)
Query: 16 VPKDRRIPK---IRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTES 72
V +D +I + I QT+ +G + ++V + + + G + V+G+ E
Sbjct: 174 VSEDSKIKQEVLIDPQTK-MGARHGQMVVVELVQRPTKRSHAIGKVIEVLGDHLAPGMEI 232
Query: 73 EMVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDD 132
E+ L +D+ + F V A + + V E+ + R DLRDL + ++D +D DD
Sbjct: 233 EIALRAHDLPHQ-FPHAVQAEVASIADEV--EESSKLPRKDLRDLPLVTIDGDDARDFDD 289
Query: 133 ALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDI 192
A++C SG + + V IADV+ +V GT LDDEA RG SVY + I MLP+ L+ +
Sbjct: 290 AVYCEPKKSGGWRLWVAIADVSYYVQHGTALDDEAISRGNSVYFPSQVIPMLPEKLSNGL 349
Query: 193 CSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMD-DSRLMDPLT 251
CSL DV+RL ++ ++ +++ +V++S A +Y + A +D D L
Sbjct: 350 CSLNPDVDRLCMVCEMTISATGKLSGSKFYPAVMRSHARFTYTKVAAILDGDEALCQEYQ 409
Query: 252 T---DLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVE 308
T DL+N+ + + R++RGA+ + E F I E + +A++++E
Sbjct: 410 TLVPDLKNLEHMYHALTDARLKRGAIAFETQESIF-IFNEDKKIASVEALIRNDAHKIIE 468
Query: 309 EFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNL---DVSSSKAL 365
E M+ ANV+ A+ + + L R H P+++ + +GL+L + +
Sbjct: 469 ECMIMANVATAK-FIEKHEKPGLFRVHDKPSEDKYRNFVTYLNELGLSLPSKEAPEPRDY 527
Query: 366 ADSLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIR 425
D L + G +LI+ + R M QAVY + H+GLA P Y+HFTSPIR
Sbjct: 528 GDILAKVAGRPD--QELIQTMLLRSMRQAVYQSDNE------GHFGLALPSYSHFTSPIR 579
Query: 426 RYADVVVHRLLSASLGIYKLPSVFQDR-----PQLTSIADNLNYRHRNAQMASRGSVELH 480
RY D+VVHR++ A L + + ++ + ++ + R A A+R +
Sbjct: 580 RYPDLVVHRVIKAILEKEAKNAANEGNYEYSLEEVIELGEHCSMTERRADEATRDVADWL 639
Query: 481 TLIYFRKRPTDTEARIVKIRSN-GFIVFVPKFGIEGPVYLTPRGQKGSGDWY-VDEQQQK 538
+ + D ++ +N G V + IEG V++T G+ D+Y D+ +
Sbjct: 640 KCEFMQDHVGDNFTGVISTVTNFGMFVRLQDLHIEGLVHITSLGR----DFYHFDDVRMC 695
Query: 539 IVKMDGNLSYSVLQTVNIHMEVVEPQPNRPKLQL 572
+ + Y V + + + V + L+L
Sbjct: 696 LSGENSGKKYRVGDEIRVQVAAVNLDEKKIDLRL 729
>SGD|S000002701 [details] [associations]
symbol:SSD1 "Translational repressor with a role in polar
growth and wall integrity" species:4932 "Saccharomyces cerevisiae"
[GO:0005933 "cellular bud" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0000900 "translation
repressor activity, nucleic acid binding" evidence=IGI] [GO:0060237
"regulation of fungal-type cell wall organization" evidence=IGI]
[GO:0017148 "negative regulation of translation" evidence=IGI]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0007067 "mitosis"
evidence=IEA] [GO:0051301 "cell division" evidence=IEA] [GO:0005935
"cellular bud neck" evidence=IDA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 SGD:S000002701 GO:GO:0005634 GO:GO:0005935
GO:GO:0051301 GO:GO:0007067 EMBL:BK006938 GO:GO:0048027
GO:GO:0000932 GO:GO:0004540 GO:GO:0008298 GO:GO:0060237
GO:GO:0010494 GO:GO:0000900 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 OrthoDB:EOG4MGWGN EMBL:U51031 EMBL:M60318
EMBL:M63004 PIR:A39578 RefSeq:NP_010579.1 ProteinModelPortal:P24276
DIP:DIP-6449N IntAct:P24276 MINT:MINT-605909 STRING:P24276
PaxDb:P24276 PeptideAtlas:P24276 PRIDE:P24276 EnsemblFungi:YDR293C
GeneID:851887 KEGG:sce:YDR293C CYGD:YDR293c
GeneTree:ENSGT00530000069300 HOGENOM:HOG000207194 OMA:DIFICGS
NextBio:969865 Genevestigator:P24276 GermOnline:YDR293C
Uniprot:P24276
Length = 1250
Score = 460 (167.0 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 143/526 (27%), Positives = 240/526 (45%)
Query: 13 ALFVPKDRRIPKIRIQTR--------QLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGE 64
A F P D+++P I I T +K + ++ W S +PFG V +G+
Sbjct: 582 AWFKPTDKKVPLIAIPTELAPKDFVENADKYSEKLFVASIKRWPITSLHPFGILVSELGD 641
Query: 65 IGDRDTESEMVLIDNDIDARPFSTQV-----LACLPPLPWSVSSEDLANPIRLDLRDLRV 119
I D DTE + +L DN+ + + Q PLP + S + D + +
Sbjct: 642 IHDPDTEIDSILRDNNFLSNEYLDQKNPQKEKPSFQPLPLTAESLEYRRNFT-DTNEYNI 700
Query: 120 FSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVER 179
F++ G + ALH +G E+G H+ DVT+ + G+ +D A KR ++V++ ++
Sbjct: 701 FAISELGWVS-EFALHVRNNGNGTLELGCHVVDVTSHIEEGSSVDRRARKRSSAVFMPQK 759
Query: 180 RIDMLPKPLTEDICSLRADVERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQ 238
+++LP+ +++ SL E SV++ L I ST +S I LS +
Sbjct: 760 LVNLLPQSFNDEL-SLAPGKESATLSVVYTLDSSTLRIKSTWVGESTISPSNILSLEQLD 818
Query: 239 ARMDDSRLMDPLTTDLRNMNSLAKKMRQRRI-ERGALTLASAEVKFQIDTETHDPLDIGM 297
++ P T+ L + +A+ RRI + A L + + +D E +D+ +
Sbjct: 819 EKLSTG---SP-TSYLSTVQEIARSFYARRINDPEATLLPTLSLLESLDDEKVK-VDLNI 873
Query: 298 YQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNL 357
++ E N +VAE+I + +LLRR P + + G N
Sbjct: 874 LDRTLGFVVINEIKRKVNSTVAEKIYTKLGDLALLRRQMQPIATKMASFRKKIQNFGYNF 933
Query: 358 DVSSSKALADSLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLY 417
D +++ L + + DD I IL + M +A YF +G + P ++ HY L P+Y
Sbjct: 934 DTNTADELIKGVLKIKDDDVRVG--IEILLFKTMPRARYFIAGKVDPDQYGHYALNLPIY 991
Query: 418 THFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSV 477
THFT+P+RRYAD VVHR L A I+ P +D L ++ N++ A A ++
Sbjct: 992 THFTAPMRRYADHVVHRQLKAV--IHDTPYT-EDMEALKITSEYCNFKKDCAYQAQEQAI 1048
Query: 478 ELHTL--IYFRKRPTD---TEARIVKIRSNGFIVFVPKFGIEGPVY 518
L I T T A ++++ + F VF+P+FGIE V+
Sbjct: 1049 HLLLCKTINDMGNTTGQLLTMATVLQVYESSFDVFIPEFGIEKRVH 1094
>UNIPROTKB|P21499 [details] [associations]
symbol:rnr species:83333 "Escherichia coli K-12"
[GO:0004540 "ribonuclease activity" evidence=IMP] [GO:0016896
"exoribonuclease activity, producing 5'-phosphomonoesters"
evidence=IDA] [GO:0008997 "ribonuclease R activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0034458 "3'-5' RNA helicase
activity" evidence=IDA] [GO:0034470 "ncRNA processing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0006402 "mRNA catabolic process" evidence=IMP] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0008859 "exoribonuclease II activity" evidence=IEA] [GO:0006950
"response to stress" evidence=IEA;IEP] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0009405 "pathogenesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=IDA] HAMAP:MF_01895 InterPro:IPR001900
InterPro:IPR003029 InterPro:IPR004476 InterPro:IPR011129
InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126
SMART:SM00357 SMART:SM00955 GO:GO:0005737 GO:GO:0009405
GO:GO:0006950 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0016556 GO:GO:0003723 EMBL:U14003
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 GO:GO:0000154 GO:GO:0008859 EMBL:J04199
InterPro:IPR013223 Pfam:PF08206 TIGRFAMs:TIGR00358 PIR:S56404
RefSeq:NP_418600.4 RefSeq:YP_492321.1 ProteinModelPortal:P21499
SMR:P21499 DIP:DIP-10733N IntAct:P21499 PRIDE:P21499
EnsemblBacteria:EBESCT00000001517 EnsemblBacteria:EBESCT00000016566
GeneID:12932898 GeneID:948692 KEGG:ecj:Y75_p4065 KEGG:eco:b4179
PATRIC:32123931 EchoBASE:EB1239 EcoGene:EG11259
HOGENOM:HOG000071120 KO:K12573 OMA:FGFLIPD ProtClustDB:PRK11642
BioCyc:EcoCyc:EG11259-MONOMER BioCyc:ECOL316407:JW5741-MONOMER
BioCyc:MetaCyc:EG11259-MONOMER Genevestigator:P21499 GO:GO:0008997
InterPro:IPR013668 Pfam:PF08461 TIGRFAMs:TIGR02063 Uniprot:P21499
Length = 813
Score = 455 (165.2 bits), Expect = 2.6e-42, P = 2.6e-42
Identities = 156/578 (26%), Positives = 262/578 (45%)
Query: 16 VPKDRRIP-KIRIQTRQL-GNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
VP D R+ I I Q+ G + ++V + + G V V+G+ +
Sbjct: 166 VPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVD 225
Query: 74 MVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDA 133
+ L ++I + V + L V E A R+DLRDL + ++D +D DDA
Sbjct: 226 IALRTHEIPYI-WPQAVEQQVAGLKEEVPEEAKAG--RVDLRDLPLVTIDGEDARDFDDA 282
Query: 134 LHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDIC 193
++C G + + V IADV+ +V P TPLD EA RGTSVY + I MLP+ L+ +C
Sbjct: 283 VYCEKKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLC 342
Query: 194 SLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEA----QARMDDSRLMDP 249
SL V+RL ++ + + ++ ++V+ S A L+Y + Q D P
Sbjct: 343 SLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAP 402
Query: 250 LTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEE 309
L L +++L K + + R ERG ++ S E KF + E I Q +A++++EE
Sbjct: 403 LVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIER-IEQTQRNDAHKLIEE 461
Query: 310 FMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD-- 367
M+ AN+S A + + + +L R H P+ E + A +GL L + D
Sbjct: 462 CMILANISAA-RFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYA 520
Query: 368 SLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRY 427
L +V D P ++++ + R M QA+Y D P H+GLA Y HFTSPIRRY
Sbjct: 521 ELLESVADRPDA-EMLQTMLLRSMKQAIY----D--PENRGHFGLALQSYAHFTSPIRRY 573
Query: 428 ADVVVHR----LLSASLG----IYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVEL 479
D+ +HR LL+ G + ++ + + + R A A+R +
Sbjct: 574 PDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADW 633
Query: 480 HTLIYFRKRPTDTEARIVK-IRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWY-VDEQQQ 537
+ + + ++ + GF V + I+G V+++ D+Y D+ Q
Sbjct: 634 LKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSL----DNDYYRFDQVGQ 689
Query: 538 KIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPKLQLTLI 575
+++ +Y + V + +E V K+ +LI
Sbjct: 690 RLMGESSGQTYRLGDRVEVRVEAVNMDER--KIDFSLI 725
>TIGR_CMR|SO_3935 [details] [associations]
symbol:SO_3935 "ribonuclease R" species:211586 "Shewanella
oneidensis MR-1" [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008997 "ribonuclease R activity" evidence=ISS] HAMAP:MF_01895
InterPro:IPR001900 InterPro:IPR003029 InterPro:IPR004476
InterPro:IPR011129 InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773
PROSITE:PS50126 SMART:SM00357 SMART:SM00955 GO:GO:0005737
GO:GO:0003723 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0090305
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070
InterPro:IPR022967 SMART:SM00316 InterPro:IPR022966 PROSITE:PS01175
GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206 TIGRFAMs:TIGR00358
HOGENOM:HOG000071120 KO:K12573 OMA:FGFLIPD InterPro:IPR013668
Pfam:PF08461 TIGRFAMs:TIGR02063 RefSeq:NP_719466.1
ProteinModelPortal:Q8EAG7 GeneID:1171573 KEGG:son:SO_3935
PATRIC:23527548 ProtClustDB:CLSK907414 Uniprot:Q8EAG7
Length = 808
Score = 436 (158.5 bits), Expect = 3.0e-40, P = 3.0e-40
Identities = 151/568 (26%), Positives = 266/568 (46%)
Query: 13 ALFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRY--PFGHYVRVIGEIGDRDT 70
A + D+RI + + + N + +V V+ R+ G V+G+
Sbjct: 163 AFVIADDKRITQEILIASEDRNGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGM 222
Query: 71 ESEMVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDI 130
E E+ L + D+ +S + L +P V+ D R+DLR L + ++D +D
Sbjct: 223 EIEIALRNYDLP-HTWSAAIEKKLRRIPDEVTESDKVG--RVDLRSLPLVTIDGEDARDF 279
Query: 131 DDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTE 190
DDA++ SG + + V IADV+ +V + LD EA RG SVY + I MLP+ ++
Sbjct: 280 DDAVYAEVKPSGGWRLWVAIADVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISN 339
Query: 191 DICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLM--- 247
+CSL V+RL ++ ++ ++ +V+ S A +Y + A ++ +
Sbjct: 340 GLCSLNPHVDRLCMVAEMTISARGKLSGYKFYPAVMHSHARFTYTQVAAMLEGGPIAPEH 399
Query: 248 DPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIR-EANQM 306
+ L L+ + SL + ++R ERGA+ + E +F + + +D + + R +A+++
Sbjct: 400 EALFVHLQCLQSLYLALDEQRAERGAIAFETIETQFIFNDQRK--IDKIVPRARNQAHKI 457
Query: 307 VEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALA 366
+EE M+ ANVS A+ +++ L R H SP+++ L A GL++ A
Sbjct: 458 IEECMILANVSAAK-FVKKHKGEILYRVHESPSEQKLANFKEFLAERGLSMGGGLEPTPA 516
Query: 367 D--SLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPI 424
D ++ + D P +LI+++ R M QA+Y TP H+GLA Y HFTSPI
Sbjct: 517 DYQNVMLQIADRPDA-ELIQVMLLRSMRQAIY------TPDNEGHFGLALEEYAHFTSPI 569
Query: 425 RRYADVVVHRLLSASLGIYKLPSVFQDRP---------QLTSIADNLNYRHRNAQMASRG 475
RRY D+V+HR++ L K + + P +L + + + R A A+R
Sbjct: 570 RRYPDLVLHRVIRYLLAKEKGEANEKWTPDGGYHYQLDELDQLGEECSTTERRADEATRD 629
Query: 476 SVELHTLIYFRKRPTDT-EARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWY-VD 533
+ + + DT EA I + + G V + I+G V+++ G D+Y D
Sbjct: 630 VSDWLKCEFMQDHVGDTFEAVIASVTNFGLFVRLNDLFIDGLVHISSLGS----DYYQFD 685
Query: 534 EQQQKIVKMDGNLSYSVLQTVNIHMEVV 561
+Q+++ Y V V + + V
Sbjct: 686 PMRQRLIGEHTGQVYQVGDPVTVKVAAV 713
>UNIPROTKB|Q9KNY1 [details] [associations]
symbol:rnr "Ribonuclease R" species:243277 "Vibrio cholerae
O1 biovar El Tor str. N16961" [GO:0006396 "RNA processing"
evidence=ISS] [GO:0008997 "ribonuclease R activity" evidence=ISS]
HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003723 GO:GO:0006396 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 GO:GO:0008859 InterPro:IPR013223
Pfam:PF08206 TIGRFAMs:TIGR00358 KO:K12573 OMA:FGFLIPD GO:GO:0008997
InterPro:IPR013668 Pfam:PF08461 TIGRFAMs:TIGR02063 PIR:C82055
RefSeq:NP_232227.1 ProteinModelPortal:Q9KNY1 DNASU:2615616
GeneID:2615616 KEGG:vch:VC2599 PATRIC:20084224
ProtClustDB:CLSK874852 Uniprot:Q9KNY1
Length = 821
Score = 432 (157.1 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 150/571 (26%), Positives = 266/571 (46%)
Query: 10 VAHALFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRD 69
+ H + +P D +R R +GN+ +++ + ++R G V V+GE
Sbjct: 179 IHHDILIPND-----LRAGAR-MGNV----VVIEITDRGTRNRGMMGKVVEVLGENMAPG 228
Query: 70 TESEMVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKD 129
E+++ + + I + +V + L V E A R+DLR L + ++D +D
Sbjct: 229 METQIAIRTHQIP-HEWPAEVEQQVAGLTEEVPEE--AKQGRVDLRALPLVTIDGEDARD 285
Query: 130 IDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLT 189
DDA++C A G + + V IADV+ +V P T LD EA RG SVY + + MLP+ L+
Sbjct: 286 FDDAVYCEAKKGGGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLS 345
Query: 190 EDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMD-DSRLMD 248
+CSL V+RL ++ ++ ++ ++V+ S A L+Y + ++ D L +
Sbjct: 346 NGLCSLNPQVDRLCMVCEMTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRE 405
Query: 249 ---PLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQ 305
L L ++ + + ++ R ERGA+ + E KF + + I +A++
Sbjct: 406 RYKALVPHLEELHKMYQVLKSARDERGAIEFETVETKFIFNAQRKIE-SIEPVVRNDAHK 464
Query: 306 MVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKAL 365
++EE M+ AN++ A ++ + +L R H P +E L +GL+L +
Sbjct: 465 LIEECMILANIASAS-LVEKAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSP 523
Query: 366 AD--SLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSP 423
D +L + +G+ P +LI+ + R M QAVY + D H+GLA Y HFTSP
Sbjct: 524 TDYANLMKQIGERPD-KELIQTMLLRSMKQAVY--NAD----NAGHFGLALKRYAHFTSP 576
Query: 424 IRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTS----IADNLNYRHRNAQMASR----G 475
IRRY D+++HR + + K QDR T D++++ M R
Sbjct: 577 IRRYPDLLLHRAIKYLIA--KQEGRNQDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDA 634
Query: 476 SVELHTLI---YFRKRP-TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWY 531
+ E+ + Y + + E + + S GF V + + I+G V+++ + D+Y
Sbjct: 635 TREVSDWLKCEYMQDHVGEELEGVVANVTSFGFFVRLTELHIDGLVHISTL----ANDYY 690
Query: 532 -VDEQQQKIVKMDGNLSYSVLQTVNIHMEVV 561
D Q++V Y + V + + V
Sbjct: 691 HYDPIGQRLVGESFGAIYRLGDAVKVKVLAV 721
>TIGR_CMR|VC_2599 [details] [associations]
symbol:VC_2599 "ribonuclease R" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0006396 "RNA processing"
evidence=ISS] [GO:0008997 "ribonuclease R activity" evidence=ISS]
HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003723 GO:GO:0006396 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 GO:GO:0008859 InterPro:IPR013223
Pfam:PF08206 TIGRFAMs:TIGR00358 KO:K12573 OMA:FGFLIPD GO:GO:0008997
InterPro:IPR013668 Pfam:PF08461 TIGRFAMs:TIGR02063 PIR:C82055
RefSeq:NP_232227.1 ProteinModelPortal:Q9KNY1 DNASU:2615616
GeneID:2615616 KEGG:vch:VC2599 PATRIC:20084224
ProtClustDB:CLSK874852 Uniprot:Q9KNY1
Length = 821
Score = 432 (157.1 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 150/571 (26%), Positives = 266/571 (46%)
Query: 10 VAHALFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRD 69
+ H + +P D +R R +GN+ +++ + ++R G V V+GE
Sbjct: 179 IHHDILIPND-----LRAGAR-MGNV----VVIEITDRGTRNRGMMGKVVEVLGENMAPG 228
Query: 70 TESEMVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKD 129
E+++ + + I + +V + L V E A R+DLR L + ++D +D
Sbjct: 229 METQIAIRTHQIP-HEWPAEVEQQVAGLTEEVPEE--AKQGRVDLRALPLVTIDGEDARD 285
Query: 130 IDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLT 189
DDA++C A G + + V IADV+ +V P T LD EA RG SVY + + MLP+ L+
Sbjct: 286 FDDAVYCEAKKGGGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLS 345
Query: 190 EDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMD-DSRLMD 248
+CSL V+RL ++ ++ ++ ++V+ S A L+Y + ++ D L +
Sbjct: 346 NGLCSLNPQVDRLCMVCEMTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRE 405
Query: 249 ---PLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQ 305
L L ++ + + ++ R ERGA+ + E KF + + I +A++
Sbjct: 406 RYKALVPHLEELHKMYQVLKSARDERGAIEFETVETKFIFNAQRKIE-SIEPVVRNDAHK 464
Query: 306 MVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKAL 365
++EE M+ AN++ A ++ + +L R H P +E L +GL+L +
Sbjct: 465 LIEECMILANIASAS-LVEKAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSP 523
Query: 366 AD--SLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSP 423
D +L + +G+ P +LI+ + R M QAVY + D H+GLA Y HFTSP
Sbjct: 524 TDYANLMKQIGERPD-KELIQTMLLRSMKQAVY--NAD----NAGHFGLALKRYAHFTSP 576
Query: 424 IRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTS----IADNLNYRHRNAQMASR----G 475
IRRY D+++HR + + K QDR T D++++ M R
Sbjct: 577 IRRYPDLLLHRAIKYLIA--KQEGRNQDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDA 634
Query: 476 SVELHTLI---YFRKRP-TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWY 531
+ E+ + Y + + E + + S GF V + + I+G V+++ + D+Y
Sbjct: 635 TREVSDWLKCEYMQDHVGEELEGVVANVTSFGFFVRLTELHIDGLVHISTL----ANDYY 690
Query: 532 -VDEQQQKIVKMDGNLSYSVLQTVNIHMEVV 561
D Q++V Y + V + + V
Sbjct: 691 HYDPIGQRLVGESFGAIYRLGDAVKVKVLAV 721
>UNIPROTKB|I3LLL5 [details] [associations]
symbol:I3LLL5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 GO:GO:0003723 GO:GO:0004540 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 EMBL:CU861482
Ensembl:ENSSSCT00000031517 Uniprot:I3LLL5
Length = 385
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 96/223 (43%), Positives = 133/223 (59%)
Query: 305 QMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKA 364
++VEEFML AN++VA +I R FP +LLRRHP P +ML L+ +GL +D SS+ A
Sbjct: 82 RLVEEFMLLANMAVAREIHRAFPERALLRRHPPPQTKMLNDLMEFCEQLGLPMDFSSAGA 141
Query: 365 LADSLDRAVGDDPYFNKLIRILATRC---MTQAVYFCSGDLTPP-EFHHYGLAAPLYTHF 420
L SL GDD Y +L C M A+YFC+G L P +F HY L PLYTHF
Sbjct: 142 LNKSLTETFGDDKYSLARKEVLTNMCSRPMQMALYFCAGTLRDPAQFRHYALNVPLYTHF 201
Query: 421 TSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELH 480
TSPIRR+ADV+VHRLL+A+LG Y+ P + L AD+ N R +MAS+ EL
Sbjct: 202 TSPIRRFADVMVHRLLAAALG-YREPPDMEPNV-LQKRADHCNDR----RMASKRVQELS 255
Query: 481 TLIYF-----RKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVY 518
T ++F P ++EA ++ + + F V V ++G++ +Y
Sbjct: 256 TGLFFAILVKESGPLESEAMVLGVLNQAFDVLVLRYGVQKRIY 298
>POMBASE|SPBC609.01 [details] [associations]
symbol:SPBC609.01 "ribonuclease II (RNB) family"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0004540 "ribonuclease activity" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 PomBase:SPBC609.01
GO:GO:0005829 EMBL:CU329671 GO:GO:0003723 GO:GO:0004540
eggNOG:COG0557 PROSITE:PS01175 OrthoDB:EOG4MGWGN PIR:T40572
RefSeq:NP_596311.1 ProteinModelPortal:O94525
EnsemblFungi:SPBC609.01.1 GeneID:2540838 KEGG:spo:SPBC609.01
OMA:LHEVATH NextBio:20801955 Uniprot:O94525
Length = 1157
Score = 370 (135.3 bits), Expect = 6.6e-31, P = 6.6e-31
Identities = 136/521 (26%), Positives = 228/521 (43%)
Query: 15 FVPKDRRIPKIRIQTRQL--------GNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIG 66
F P D+RIP I I + Q+ + DK + + W S +PFG IG IG
Sbjct: 503 FKPSDKRIPLIAISSDQVPPTFFTNNDDFKDKVFLAGIKRWPTTSLHPFGTLYESIGTIG 562
Query: 67 DRDTESEMVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPG 126
D E + +L D F + C+ LP + +E+L R +LRD F + G
Sbjct: 563 DPKVEYKAILHDFSCHTYDFPESLSHCVKRLPTPIPAEELQK--RYNLRDKLTFMI---G 617
Query: 127 CKDIDDALHC-TALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLP 185
+D ALH T G +G+H+ADV +V PLDDEA+ R + V L++ + LP
Sbjct: 618 TRDY--ALHIDTGSIDGVITLGIHVADVAYYVKQDMPLDDEAANRVSEVQLLQGSVPFLP 675
Query: 186 KPLTEDICSLRADVERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDS 244
K ++E+I SL + L S++ +L ++ ++ SVI + +S AQA + +
Sbjct: 676 KKVSEEI-SLIEGHDCLTISIVVQLDLKSGAVLQCSLGPSVIHPSSFISLESAQANLQTN 734
Query: 245 RLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDI-GMYQIREA 303
+ + + L K ++++ +L QI + + I + I +
Sbjct: 735 EALQLVDASAHVLTKLRLKT-DKKLDLQSLYCFEF-CDGQIPNIQNINMSIFEAFPIACS 792
Query: 304 NQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSK 363
Q +E ++ N VA ++ FP +LR++ P+ L+ + G+NL SS+
Sbjct: 793 LQQIEHWV---NEKVASHLMSVFPSKVILRKNQRPSD--FASLVAVSELTGVNLSASSTP 847
Query: 364 ALADSLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSP 423
+ + + A D L+++ R ++ Y G + H+ + P YTHF P
Sbjct: 848 SEIMT-EIATTKDKRTKMLLQLTLRRMCNESEYTI-GTSNAKDVSHFVFSCPYYTHFCHP 905
Query: 424 IRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYR---HRNAQMASRGSVELH 480
RRY D+ V R L + P +D L SI + N +RNAQ S +
Sbjct: 906 TRRYIDICVQRQLREAFD--GRPDFSKDYRSLLSITQSCNTLSNFYRNAQEKSLHAYLCQ 963
Query: 481 TL--IYFRKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYL 519
L I R +A ++ + + + +FG+E + L
Sbjct: 964 LLHSINLRSGLVKHKAFVLAVDQEYIDIVIYEFGLERRISL 1004
>UNIPROTKB|Q5HVE0 [details] [associations]
symbol:CJE0734 "RNB-like protein" species:195099
"Campylobacter jejuni RM1221" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0004540 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 KO:K12573 RefSeq:YP_178745.1
ProteinModelPortal:Q5HVE0 STRING:Q5HVE0 GeneID:3230687
KEGG:cjr:CJE0734 PATRIC:20043197 HOGENOM:HOG000103239 OMA:DCMLLAN
ProtClustDB:CLSK878874 BioCyc:CJEJ195099:GJC0-751-MONOMER
Uniprot:Q5HVE0
Length = 644
Score = 330 (121.2 bits), Expect = 5.9e-27, P = 5.9e-27
Identities = 109/385 (28%), Positives = 185/385 (48%)
Query: 59 VRVIGEIGDR--DTESEMVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLAN-PIRLDLR 115
+ V+G I D D + + L + + + FS AC+ + S D + R+DLR
Sbjct: 166 IEVLGHIDDESIDEKISLALFNKNNE---FSD---ACIKEALANGDSVDASMYENRMDLR 219
Query: 116 DLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVY 175
L ++DP KD DDA++ + E+ V IADV+ +V+ + +D EA RG S+Y
Sbjct: 220 ALPFCTIDPIHAKDFDDAIY---FDTQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIY 276
Query: 176 LVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYV 235
I MLP PL+E+ICSL+ ++RLA+ L E ++I + +I S +Y
Sbjct: 277 FPHIAIPMLPHPLSENICSLKPHLDRLAYCFKITLDHENKVIKEELFEGIINSKRRFNYD 336
Query: 236 EAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDI 295
E + + L+ L + + K +R+ R+ + A + E++ +D E
Sbjct: 337 EVDEILVQKPDLKELSW-LYELFEITKNLRKMRL-KNAFEFRTEELRMNLD-ENLSLKST 393
Query: 296 GMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGL 355
+ ++ ++E+ ML AN + A+ I + R H S ++ LL +G+
Sbjct: 394 VFEKDTPSHNLIEDCMLLANKAAAKLID-----IGVFRNHLSADTRKIDKLLNELRELGI 448
Query: 356 NLDVSSSKALADSL-D-RAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLA 413
DV+ L + + D +A+ D+ + L + +A Y + H+GL
Sbjct: 449 --DVNFKPNLPELIRDIQALADELNLRAEVDKLIIKAQKKAEY------SSVNAGHFGLG 500
Query: 414 APLYTHFTSPIRRYADVVVHRLLSA 438
Y+HFTSPIRRY+D+++HRLL A
Sbjct: 501 FDKYSHFTSPIRRYSDLILHRLLKA 525
>TIGR_CMR|CJE_0734 [details] [associations]
symbol:CJE_0734 "RNB-like protein" species:195099
"Campylobacter jejuni RM1221" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0004540 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 KO:K12573 RefSeq:YP_178745.1
ProteinModelPortal:Q5HVE0 STRING:Q5HVE0 GeneID:3230687
KEGG:cjr:CJE0734 PATRIC:20043197 HOGENOM:HOG000103239 OMA:DCMLLAN
ProtClustDB:CLSK878874 BioCyc:CJEJ195099:GJC0-751-MONOMER
Uniprot:Q5HVE0
Length = 644
Score = 330 (121.2 bits), Expect = 5.9e-27, P = 5.9e-27
Identities = 109/385 (28%), Positives = 185/385 (48%)
Query: 59 VRVIGEIGDR--DTESEMVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLAN-PIRLDLR 115
+ V+G I D D + + L + + + FS AC+ + S D + R+DLR
Sbjct: 166 IEVLGHIDDESIDEKISLALFNKNNE---FSD---ACIKEALANGDSVDASMYENRMDLR 219
Query: 116 DLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVY 175
L ++DP KD DDA++ + E+ V IADV+ +V+ + +D EA RG S+Y
Sbjct: 220 ALPFCTIDPIHAKDFDDAIY---FDTQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIY 276
Query: 176 LVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYV 235
I MLP PL+E+ICSL+ ++RLA+ L E ++I + +I S +Y
Sbjct: 277 FPHIAIPMLPHPLSENICSLKPHLDRLAYCFKITLDHENKVIKEELFEGIINSKRRFNYD 336
Query: 236 EAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDI 295
E + + L+ L + + K +R+ R+ + A + E++ +D E
Sbjct: 337 EVDEILVQKPDLKELSW-LYELFEITKNLRKMRL-KNAFEFRTEELRMNLD-ENLSLKST 393
Query: 296 GMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGL 355
+ ++ ++E+ ML AN + A+ I + R H S ++ LL +G+
Sbjct: 394 VFEKDTPSHNLIEDCMLLANKAAAKLID-----IGVFRNHLSADTRKIDKLLNELRELGI 448
Query: 356 NLDVSSSKALADSL-D-RAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLA 413
DV+ L + + D +A+ D+ + L + +A Y + H+GL
Sbjct: 449 --DVNFKPNLPELIRDIQALADELNLRAEVDKLIIKAQKKAEY------SSVNAGHFGLG 500
Query: 414 APLYTHFTSPIRRYADVVVHRLLSA 438
Y+HFTSPIRRY+D+++HRLL A
Sbjct: 501 FDKYSHFTSPIRRYSDLILHRLLKA 525
>POMBASE|SPCC16C4.09 [details] [associations]
symbol:sts5 "RNB-like protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006401 "RNA
catabolic process" evidence=ISM] [GO:0032153 "cell division site"
evidence=IDA] [GO:0034613 "cellular protein localization"
evidence=IMP] [GO:2000115 "regulation of maintenance of bipolar
cell polarity regulating cell shape" evidence=IMP]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 PomBase:SPCC16C4.09
GO:GO:0005829 GO:GO:0034613 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0032153 GO:GO:0003723 GO:GO:0006401 GO:GO:0007049
GO:GO:0004527 GO:GO:0004540 eggNOG:COG0557 PROSITE:PS01175
OrthoDB:EOG4MGWGN EMBL:D58421 PIR:T41099 PIR:T45283
RefSeq:NP_587919.1 ProteinModelPortal:O74454 STRING:O74454
EnsemblFungi:SPCC16C4.09.1 GeneID:2539180 KEGG:spo:SPCC16C4.09
OMA:HESNINS NextBio:20800351 GO:GO:2000115 Uniprot:O74454
Length = 1066
Score = 284 (105.0 bits), Expect = 6.0e-26, Sum P(2) = 6.0e-26
Identities = 106/400 (26%), Positives = 192/400 (48%)
Query: 130 IDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLT 189
+ A H S+G + VG+H+ DV+ + PG+PLD E +R +V L ++ + + P L
Sbjct: 628 VSSAFHIRPTSTG-YHVGIHVTDVSRVIEPGSPLDRELQRRSIAVNLCQKSVPLFPTTLG 686
Query: 190 EDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMD-DSRLMD 248
E + SLR D + S++ +++ +I T +VI+ A + EA + D+RL
Sbjct: 687 EAL-SLREDKDCYTMSLLLDVSSTGKIRGTWIGWAVIRPRKAYTMKEADELLQTDARL-- 743
Query: 249 PLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTET--HDPLDIGMYQIREANQM 306
R ++++ ++R + + + D E+ DP + ++ I A ++
Sbjct: 744 ------RLFHTVSSRLRTHHLGTDVPLSRYCRLVRRWDEESCSFDPNETNLF-ISSAVEV 796
Query: 307 VEEFML-AANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKAL 365
+ E +L AAN +VA + ++F + LR P++E L A +G LD+SS+K+L
Sbjct: 797 LRETLLDAANRAVASHLRQEFRENAFLRTQRLPSRENCRILQSMAIQMGCVLDLSSTKSL 856
Query: 366 ADSLDRAVGDDPYFNKLIRILATRCMTQAVYFCS---GDLTPPEFHHYGLA--APLYTHF 420
SL + DD N ++++ + +AVY G+L + G+ + THF
Sbjct: 857 LRSLS-LIEDDTVRN-ILQLYYYKVTPRAVYEMQKYKGNLAS-QMMSLGIEDESDDLTHF 913
Query: 421 TSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADN-LNYRHRNAQMASRGSVEL 479
T+P+ RY D+VVH L L +L S + R ++ S A N + R ++ A S+ +
Sbjct: 914 TAPLERYGDIVVHYQLQLLLR-GELAS--EKRLRVWSQAANDASRRLVISKFAQETSIHI 970
Query: 480 HTLIYFRKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYL 519
+ + + + + + F VF P G+E V+L
Sbjct: 971 KIFSDWAESQVWQDGLVCFVAPSYFDVFFPSLGMEKRVHL 1010
Score = 92 (37.4 bits), Expect = 6.0e-26, Sum P(2) = 6.0e-26
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 15 FVPKDRRIPKIRIQTRQ-----LGN--LLDKRIIVA-VDSWDCQSRYPFGHYVRVIGEIG 66
F P D+R+P I I T Q LGN +R+ +A + W S +PFG ++GE+G
Sbjct: 484 FKPSDKRVPLIAIPTEQAPTDFLGNDQAYAQRLFLASIKRWPVTSLHPFG---MLVGELG 540
Query: 67 DRDTESEMV---LIDNDIDARPF 86
D+ S V L D + + P+
Sbjct: 541 SMDSMSAQVSALLHDTGVHSEPW 563
>UNIPROTKB|P30850 [details] [associations]
symbol:rnb "ribonuclease II" species:83333 "Escherichia
coli K-12" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IGI] [GO:0016078
"tRNA catabolic process" evidence=IGI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008859
"exoribonuclease II activity" evidence=IEA] HAMAP:MF_01036
InterPro:IPR001900 InterPro:IPR003029 InterPro:IPR004476
InterPro:IPR011129 InterPro:IPR011804 Pfam:PF00575 Pfam:PF00773
PROSITE:PS50126 SMART:SM00357 SMART:SM00955 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003723 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0016078 GO:GO:0008408 InterPro:IPR022967
SMART:SM00316 InterPro:IPR022966 PROSITE:PS01175 BRENDA:3.1.13.1
GO:GO:0008859 EMBL:X67913 PIR:A64877 RefSeq:NP_415802.1
RefSeq:YP_489554.1 PDB:2ID0 PDB:2IX0 PDB:2IX1 PDBsum:2ID0
PDBsum:2IX0 PDBsum:2IX1 ProteinModelPortal:P30850 SMR:P30850
DIP:DIP-10724N IntAct:P30850 MINT:MINT-1248196 PaxDb:P30850
PRIDE:P30850 EnsemblBacteria:EBESCT00000004108
EnsemblBacteria:EBESCT00000004109 EnsemblBacteria:EBESCT00000015364
GeneID:12934347 GeneID:945864 KEGG:ecj:Y75_p1261 KEGG:eco:b1286
PATRIC:32117840 EchoBASE:EB1577 EcoGene:EG11620 eggNOG:COG4776
HOGENOM:HOG000271427 KO:K01147 OMA:ERDIADW ProtClustDB:PRK05054
BioCyc:EcoCyc:EG11620-MONOMER BioCyc:ECOL316407:JW1279-MONOMER
BioCyc:MetaCyc:EG11620-MONOMER EvolutionaryTrace:P30850
Genevestigator:P30850 InterPro:IPR013223 PANTHER:PTHR23355:SF6
Pfam:PF08206 TIGRFAMs:TIGR00358 TIGRFAMs:TIGR02062 Uniprot:P30850
Length = 644
Score = 295 (108.9 bits), Expect = 5.2e-23, P = 5.2e-23
Identities = 136/476 (28%), Positives = 210/476 (44%)
Query: 98 PWSVSSEDLANP-IRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNF 156
P V++E L +R DL L ++D +D+DDAL AL ++ V IAD T +
Sbjct: 175 PDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAW 234
Query: 157 VHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEI 216
+ G+ LD A R + YL I MLP+ L++D+CSLRA+ R + L+ + I
Sbjct: 235 IAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTI 294
Query: 217 IST-RYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIE---RG 272
+ + I+S A L Y + ++++ P + + L ++ QRR E
Sbjct: 295 EDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNH 354
Query: 273 ALTLASA-EVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQ---FPL 328
AL + +F + E + LDI R AN++VEE M+AAN+ A ++LR F +
Sbjct: 355 ALVFKDRPDYRFILG-EKGEVLDIVAEPRRIANRIVEEAMIAANICAA-RVLRDKLGFGI 412
Query: 329 CSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD--SLDRAVGDDP--YFNKLIR 384
++ + L LL+T GL++D L L R + P + + IR
Sbjct: 413 YNVHMGFDPANADALAALLKTH---GLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIR 469
Query: 385 ILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYK 444
Q+ S + P H+GL Y +TSPIR+Y D++ HRLL A + K
Sbjct: 470 RF------QSFAEISTEPGP----HFGLGLEAYATWTSPIRKYGDMINHRLLKA---VIK 516
Query: 445 LPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVE-LHTLIYFRKRPTDTE--ARIVKIRS 501
+ RPQ I + R R +MA R + L+ K TDT A IV I
Sbjct: 517 GETA--TRPQ-DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISR 573
Query: 502 NGFIVFVPKFGIEGPVYLTPRG-QKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNI 556
G V + G + P D V Q+ V++ G Y V +++
Sbjct: 574 GGMRV---RLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDV 626
>UNIPROTKB|Q9KLE1 [details] [associations]
symbol:rnb "Exoribonuclease 2" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0006401 "RNA catabolic
process" evidence=ISS] [GO:0008859 "exoribonuclease II activity"
evidence=ISS] HAMAP:MF_01036 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011804
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 GO:GO:0003723 GO:GO:0006401
EMBL:AE003853 GenomeReviews:AE003853_GR InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 InterPro:IPR022966
PROSITE:PS01175 GO:GO:0008859 eggNOG:COG4776 KO:K01147 OMA:ERDIADW
ProtClustDB:PRK05054 InterPro:IPR013223 PANTHER:PTHR23355:SF6
Pfam:PF08206 TIGRFAMs:TIGR00358 TIGRFAMs:TIGR02062 PIR:D82415
RefSeq:NP_233191.1 ProteinModelPortal:Q9KLE1 SMR:Q9KLE1
DNASU:2612319 GeneID:2612319 KEGG:vch:VCA0805 PATRIC:20086158
Uniprot:Q9KLE1
Length = 678
Score = 284 (105.0 bits), Expect = 9.9e-22, P = 9.9e-22
Identities = 110/434 (25%), Positives = 193/434 (44%)
Query: 99 WSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVH 158
W + +D A+ +R DL L ++D KD+DDAL+ L +G+F + + IAD T ++
Sbjct: 183 WQL--KDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYIT 240
Query: 159 PGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEI-I 217
P +D A +RG ++YL R I MLP+ L +++CSL + R A + + I
Sbjct: 241 PEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGD 300
Query: 218 STRYTKSVIKSCAALSY--VEAQARMDDSRLMDP---LTTDLRNMNSLAKKMRQRRIERG 272
R+ + IKS A L Y V S P + +R++ + ++ R
Sbjct: 301 DIRFFAANIKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQARANWRETHA 360
Query: 273 ALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLL 332
+ + +F++ + +D + I R AN++VEE M+ AN+ + + F +
Sbjct: 361 VVFPDRPDYRFELSAD-NDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGF-GVF 418
Query: 333 RRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLIRILATR--- 389
H E + ++ A G + A A++L G F L R LAT+
Sbjct: 419 NTHAGFKAEKMADVVELMAVNG------APNADAETLATVEG----FAALRRWLATQETS 468
Query: 390 CMTQAV--YFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPS 447
+ + Y ++ H+ + +Y +TSPIR+Y D++ HRLL A + + K P
Sbjct: 469 YLDNRIRKYQSYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHI-LGKAPV 527
Query: 448 VFQDRPQLTSIADNLNYRHRNAQMASRGSVE---LHTLIYFRKRPTDTEARI-------- 496
D ++ + L ++ ++A R + TL + T +A I
Sbjct: 528 QTPDE----TVGEELALHRKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDINRPGM 583
Query: 497 -VKIRSNGFIVFVP 509
V++ NG + F+P
Sbjct: 584 RVRLLENGAMAFIP 597
>TIGR_CMR|VC_A0805 [details] [associations]
symbol:VC_A0805 "exoribonuclease II" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0006401 "RNA catabolic process"
evidence=ISS] [GO:0008859 "exoribonuclease II activity"
evidence=ISS] HAMAP:MF_01036 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011804
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 GO:GO:0003723 GO:GO:0006401
EMBL:AE003853 GenomeReviews:AE003853_GR InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 InterPro:IPR022966
PROSITE:PS01175 GO:GO:0008859 eggNOG:COG4776 KO:K01147 OMA:ERDIADW
ProtClustDB:PRK05054 InterPro:IPR013223 PANTHER:PTHR23355:SF6
Pfam:PF08206 TIGRFAMs:TIGR00358 TIGRFAMs:TIGR02062 PIR:D82415
RefSeq:NP_233191.1 ProteinModelPortal:Q9KLE1 SMR:Q9KLE1
DNASU:2612319 GeneID:2612319 KEGG:vch:VCA0805 PATRIC:20086158
Uniprot:Q9KLE1
Length = 678
Score = 284 (105.0 bits), Expect = 9.9e-22, P = 9.9e-22
Identities = 110/434 (25%), Positives = 193/434 (44%)
Query: 99 WSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVH 158
W + +D A+ +R DL L ++D KD+DDAL+ L +G+F + + IAD T ++
Sbjct: 183 WQL--KDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYIT 240
Query: 159 PGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEI-I 217
P +D A +RG ++YL R I MLP+ L +++CSL + R A + + I
Sbjct: 241 PEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGD 300
Query: 218 STRYTKSVIKSCAALSY--VEAQARMDDSRLMDP---LTTDLRNMNSLAKKMRQRRIERG 272
R+ + IKS A L Y V S P + +R++ + ++ R
Sbjct: 301 DIRFFAANIKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQARANWRETHA 360
Query: 273 ALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLL 332
+ + +F++ + +D + I R AN++VEE M+ AN+ + + F +
Sbjct: 361 VVFPDRPDYRFELSAD-NDVVAIHADMRRTANRLVEESMITANICAGKTLQTTFGF-GVF 418
Query: 333 RRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLIRILATR--- 389
H E + ++ A G + A A++L G F L R LAT+
Sbjct: 419 NTHAGFKAEKMADVVELMAVNG------APNADAETLATVEG----FAALRRWLATQETS 468
Query: 390 CMTQAV--YFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPS 447
+ + Y ++ H+ + +Y +TSPIR+Y D++ HRLL A + + K P
Sbjct: 469 YLDNRIRKYQSYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHI-LGKAPV 527
Query: 448 VFQDRPQLTSIADNLNYRHRNAQMASRGSVE---LHTLIYFRKRPTDTEARI-------- 496
D ++ + L ++ ++A R + TL + T +A I
Sbjct: 528 QTPDE----TVGEELALHRKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDINRPGM 583
Query: 497 -VKIRSNGFIVFVP 509
V++ NG + F+P
Sbjct: 584 RVRLLENGAMAFIP 597
>UNIPROTKB|E1C0Z0 [details] [associations]
symbol:HELZ2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001900 InterPro:IPR007087 InterPro:IPR015880
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS00028 SMART:SM00355
SMART:SM00955 GO:GO:0008270 GO:GO:0003723 GO:GO:0005622
GO:GO:0004386 GO:GO:0004540 OMA:FRAAHIM PANTHER:PTHR10887:SF16
GeneTree:ENSGT00550000074391 EMBL:AADN02019144 IPI:IPI00594758
Ensembl:ENSGALT00000009906 Uniprot:E1C0Z0
Length = 2565
Score = 240 (89.5 bits), Expect = 4.9e-21, Sum P(2) = 4.9e-21
Identities = 82/230 (35%), Positives = 117/230 (50%)
Query: 99 WSVSSEDLANPIRLDLRDLR---VFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTN 155
+S SS+ NP + +LRD R F+VDP G +D+DDA+ L +E+G+HIADV +
Sbjct: 1239 YSTSSKP--NPSKENLRDCRSYLTFTVDPQGARDLDDAVSVRDLGH-QYEIGIHIADVAS 1295
Query: 156 FVHPGTPLDDEASKRGTSVYLVERR-IDMLPKPLTEDICSLRADVERLAFS--VIWELTP 212
V G+ +D EA KRG S Y E+ + MLP ++ DICSL +R S VI E
Sbjct: 1296 IVPKGSAVDVEAKKRGVSYYAPEQEPVHMLPPRVSNDICSLLPQKDRRVISLFVIVEKKT 1355
Query: 213 EAEIISTRYTKSVIKSCAALSYVEAQARMDDSRL--MDPLTTDLRNMNSLAKKMRQRRIE 270
+ ++ +T SVI S LSY EA+ + D D L D + LA R+
Sbjct: 1356 D-KVTDGNFTLSVICSDWQLSYEEAELCIQDHYRGGADALRFDTLE-DCLAVAYHFSRMH 1413
Query: 271 RGALTLASAEVKFQIDTETHDPLDIGMYQ-IREANQMVEEFMLAANVSVA 319
R + + + D +D LD G R ++QM+EE M+ N VA
Sbjct: 1414 RKS--------RLKEDC-FYDQLDEGSSPGNRRSHQMIEELMIMFNSFVA 1454
Score = 101 (40.6 bits), Expect = 4.9e-21, Sum P(2) = 4.9e-21
Identities = 30/74 (40%), Positives = 38/74 (51%)
Query: 369 LDRAVGDDPYFNKLIRI-LATRCMTQAVYFCSGDLTPP-EFHHYGLAAPLYTHFTSPIRR 426
LD V DD + KL + L R + YFC + T + HY L YT +SPIRR
Sbjct: 1539 LDLVVTDDIH-PKLAPVALEFRKLLGRSYFCRSNSTAQSKVGHYSLKVDSYTWASSPIRR 1597
Query: 427 YADVVVHRLLSASL 440
Y D+VV R L + L
Sbjct: 1598 YMDIVVQRHLHSVL 1611
>RGD|1306056 [details] [associations]
symbol:Pric285 "peroxisomal proliferator-activated receptor A
interacting complex 285" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001900 InterPro:IPR003593 InterPro:IPR026855
Pfam:PF00773 SMART:SM00382 SMART:SM00955 RGD:1306056 GO:GO:0005524
GO:GO:0003723 GO:GO:0004386 GO:GO:0004540 PANTHER:PTHR10887:SF16
GeneTree:ENSGT00550000074391 IPI:IPI00567928 RefSeq:XP_001057758.2
RefSeq:XP_230961.5 UniGene:Rn.47450 ProteinModelPortal:D4ADC2
Ensembl:ENSRNOT00000017787 GeneID:296474 KEGG:rno:296474
UCSC:RGD:1306056 CTD:296474 OrthoDB:EOG4Q84WM NextBio:641262
ArrayExpress:D4ADC2 Uniprot:D4ADC2
Length = 2944
Score = 216 (81.1 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 94/339 (27%), Positives = 155/339 (45%)
Query: 21 RIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESEMVLIDND 80
++ +R +T + + + V + W + YP G + V+ + + ++ +++
Sbjct: 1477 KVKHVRHETLKREDRSTRLFWVRIVLWRERFYYPLGIVLEVLPKAVTWEQGLHILDLEHG 1536
Query: 81 IDAR-PFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDALHCTAL 139
+ A P V L S D+A R D R F+VDP G ++DDAL L
Sbjct: 1537 LKAHTPDPASVSKALQKYH---SEIDMAASHREDYRRFLTFTVDPQGACNLDDALSVRDL 1593
Query: 140 SSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERR-IDMLPKPLTEDICSLRAD 198
+EV VHIADV + V LD EA ++GT Y R + MLP L ++ SL
Sbjct: 1594 GPV-YEVAVHIADVASLVPKDGALDVEARQQGTVFYAPSREPVLMLPASLCQEALSLLPG 1652
Query: 199 VERLAFSVIWELTPE----AEIISTRYTKSVIKSCAALSYVEAQA---RMDDSRLMDPLT 251
+RLA S+ LT E +I S R+ S+++S LSY EA+ R + L P
Sbjct: 1653 QDRLAISLF--LTMEKGGGGQIRSLRFAPSIVRSDRQLSYEEAEELIKRHPGAGLKLPAH 1710
Query: 252 TDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFM 311
D +A + R L A+ ++ E D + +G R A+ MV+E+M
Sbjct: 1711 LDSVEACVVAACYFSWMLRRQRLP---ADCYYEPPDE--DSV-LGF---RTAHIMVQEYM 1761
Query: 312 LAANVSVAEQIL--RQFPLCSLLRRHPSPTKEMLEPLLR 348
+ N VAE ++ + + LR P+P+++ L+ + +
Sbjct: 1762 IQFNSRVAEFLVGDKHTQTLTPLRWQPTPSRQQLDSVFK 1800
Score = 119 (46.9 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 32/103 (31%), Positives = 52/103 (50%)
Query: 409 HYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRN 468
HY L YT +SPIRRY DVV+ RL+ +LG +K S + +R + + + + ++
Sbjct: 1890 HYSLQVDWYTWASSPIRRYLDVVLQRLILLALG-HK-SSTYSNR-DIDGLCQDFSRQYAC 1946
Query: 469 AQMASRGSVELHTLIYFRKRPTDTEARIVKIRSNG--FIVFVP 509
AQ R + LH I + +P + +V + + F V P
Sbjct: 1947 AQSYQRRACSLHLAIQLKTQPQNKLGFVVDVETGARCFKVLFP 1989
>DICTYBASE|DDB_G0285435 [details] [associations]
symbol:DDB_G0285435 species:44689 "Dictyostelium
discoideum" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 dictyBase:DDB_G0285435 EMBL:AAFI02000079
GO:GO:0003723 GO:GO:0004540 eggNOG:COG0557 RefSeq:XP_638051.1
ProteinModelPortal:Q54N92 EnsemblProtists:DDB0186491 GeneID:8625097
KEGG:ddi:DDB_G0285435 InParanoid:Q54N92 OMA:RYNDISW Uniprot:Q54N92
Length = 1642
Score = 227 (85.0 bits), Expect = 1.6e-19, Sum P(3) = 1.6e-19
Identities = 51/141 (36%), Positives = 84/141 (59%)
Query: 111 RLDLRDLRVFSVDPPGCKDIDDALHCTALSS----GN--FEVGVHIADVTNFVHPGTPLD 164
R+DL L ++DPP D+DDA+ L+ G FE+G+HI+DV+ F+ G+ LD
Sbjct: 984 RVDLTHLVPVTIDPPSSTDLDDAISFRCLTDEFDEGMSVFEIGIHISDVSAFLEKGSKLD 1043
Query: 165 DEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKS 224
EA R ++YL+ I MLPK L+ CSL+ +R FS++ ++ + +II ++ KS
Sbjct: 1044 KEAEYRLNTIYLIGSIIPMLPKNLSSSTCSLKLYQKRFCFSLLVKIRSDGKIIDYKFCKS 1103
Query: 225 VIKSCAALSYVEAQARMDDSR 245
++S LSY +AQ ++ ++
Sbjct: 1104 NLRSKGHLSYEKAQRIIEKNK 1124
Score = 93 (37.8 bits), Expect = 1.6e-19, Sum P(3) = 1.6e-19
Identities = 31/91 (34%), Positives = 45/91 (49%)
Query: 356 NLDVSSS---KALADSLDRAVGD-DPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYG 411
N+ VSS + + +++A+ + P K +R LA M Y + + F +
Sbjct: 1398 NIVVSSEDDWRTIKTKVEKALKNCTPEQAKAMRRLAMHLMDPTKYITTVEKRQG-FGNEN 1456
Query: 412 LA--APLYTHFTSPIRRYADVVVHRLLSASL 440
L YTHFT+PIRRY DV +HR LS L
Sbjct: 1457 LLDERSQYTHFTAPIRRYMDVNIHRALSLQL 1487
Score = 50 (22.7 bits), Expect = 4.1e-15, Sum P(3) = 4.1e-15
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 401 DLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPS-VFQDRPQLT-SI 458
D + EF + + P T +RY D+ R +S L + L + +++ P LT I
Sbjct: 1504 DESSQEFTDFKKSLPTGDDLTQLCQRYNDISWKRKISEKLNLLYLATYIWEKGPILTPGI 1563
Query: 459 ADNLNYRH 466
++ +H
Sbjct: 1564 VVTMSTKH 1571
Score = 49 (22.3 bits), Expect = 1.6e-19, Sum P(3) = 1.6e-19
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 260 LAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVA 319
++ + R ER + S +++ + E P+ + E++ +V+EFM AN A
Sbjct: 1214 ISSLLNNYRKERREIFDISNNIQYDLSVEGV-PISVDFLPKLESHVLVQEFMHLANNLAA 1272
Query: 320 EQIL 323
+L
Sbjct: 1273 VSLL 1276
>UNIPROTKB|E2RBM4 [details] [associations]
symbol:PRIC285 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001900 InterPro:IPR003593
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS50103 SMART:SM00382
SMART:SM00955 GO:GO:0005524 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0004540 InterPro:IPR022966 PROSITE:PS01175
PANTHER:PTHR10887:SF16 GeneTree:ENSGT00550000074391
EMBL:AAEX03014158 Ensembl:ENSCAFT00000020582 OMA:RCQYAHS
Uniprot:E2RBM4
Length = 2919
Score = 210 (79.0 bits), Expect = 5.4e-19, Sum P(2) = 5.4e-19
Identities = 91/314 (28%), Positives = 138/314 (43%)
Query: 42 VAVDSWDCQSRYPFGHYVRVIGEIGDRDTESEMVLIDNDIDARPFSTQVLACLPPLPWSV 101
V + W + YP G + V+ E E + ++D + + S + A L
Sbjct: 1502 VRIVLWRQRFYYPLGIVLEVLPEA--TTWEQGLRVLDLEHGLKKPSLEPAALCKVLQKYR 1559
Query: 102 SSEDLANPIRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGT 161
+ A R D R F+VDP G + +DDAL L ++V VHIADV + +
Sbjct: 1560 AELGRAPDHREDCRGFPTFTVDPQGAQYLDDALSVRDLGP-RYQVAVHIADVASSLPRDG 1618
Query: 162 PLDDEASKRGTSVYLVERR-IDMLPKPLTEDICSLRADVERLAFSVIWELTPEA---EII 217
+D EA ++G + Y +R + MLP L D+ SL +RLA S+ LT E +I
Sbjct: 1619 AVDLEARRQGITFYAPDREPVPMLPASLCRDVLSLLPGQDRLAISLF--LTVEKGSDQIK 1676
Query: 218 STRYTKSVIKSCAALSYVEAQA---RMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGAL 274
S + SVI S LSY EA+A R P D + +A R + R L
Sbjct: 1677 SLHFAPSVICSDRQLSYEEAEAVIRRHPGGGRELPAQLDSVDACVVAACHFSRVLRRRRL 1736
Query: 275 TLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSL--L 332
Q D+ P + + R A+ M++E+M+ N VAE ++ P ++ L
Sbjct: 1737 ---------QTDSHYEQPSEDCVLGFRAAHVMIKEYMIQFNSLVAELLVSSEPTRTVTPL 1787
Query: 333 RRHPSPTKEMLEPL 346
R P+P + L L
Sbjct: 1788 RWQPTPGERQLGAL 1801
Score = 114 (45.2 bits), Expect = 5.4e-19, Sum P(2) = 5.4e-19
Identities = 31/104 (29%), Positives = 47/104 (45%)
Query: 398 CSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTS 457
C G+ E HY L YT TSPIRRY DVV+ R + +LG + + R +
Sbjct: 1884 CQGERQ--EAGHYSLQVDWYTWATSPIRRYLDVVLQRQILLALG--RGGPAYSAR-DIDG 1938
Query: 458 IADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEARIVKIRS 501
+ +Y+H AQ R + LH + +P +V + +
Sbjct: 1939 LCQEFSYQHGRAQSYQRQARSLHLAAQLKVQPRSKLGFVVGVET 1982
>TAIR|locus:2180172 [details] [associations]
symbol:EMB2730 "EMBRYO DEFECTIVE 2730" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0004540 "ribonuclease activity" evidence=IEA;ISS] [GO:0009793
"embryo development ending in seed dormancy" evidence=NAS]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=RCA;IMP]
[GO:0009658 "chloroplast organization" evidence=RCA;IMP]
[GO:0006399 "tRNA metabolic process" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0034660 "ncRNA metabolic
process" evidence=RCA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005739 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009507 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009658
GO:GO:0003723 GO:GO:0006364 GO:GO:0000175 eggNOG:COG0557
EMBL:AL162874 GO:GO:0008859 EMBL:BT010457 EMBL:AK176383
IPI:IPI00548385 PIR:T48246 RefSeq:NP_195845.2 UniGene:At.4904
ProteinModelPortal:Q6NQJ6 SMR:Q6NQJ6 STRING:Q6NQJ6 PaxDb:Q6NQJ6
PRIDE:Q6NQJ6 EnsemblPlants:AT5G02250.1 GeneID:830864
KEGG:ath:AT5G02250 GeneFarm:4119 TAIR:At5g02250
HOGENOM:HOG000029837 InParanoid:Q6NQJ6 OMA:RVEEAHP PhylomeDB:Q6NQJ6
ProtClustDB:CLSN2681022 Genevestigator:Q6NQJ6 Uniprot:Q6NQJ6
Length = 803
Score = 224 (83.9 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 66/221 (29%), Positives = 111/221 (50%)
Query: 103 SEDLANPIRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTP 162
S D+ R+DL L+V+++D ++DDAL T L G ++ +H+AD +V PG+
Sbjct: 391 SSDIDAVRRIDLTHLKVYAIDVDEADELDDALSATRLQDGRIKIWIHVADPARYVTPGSK 450
Query: 163 LDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYT 222
+D EA +RGTSV+L M P+ L + SLR A SV L + I
Sbjct: 451 VDREARRRGTSVFLPTATYPMFPEKLAMEGMSLRQGENCNAVSVSVVLRSDGCITEYSVD 510
Query: 223 KSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVK 282
S+I+ L+Y E+ + + L + +L+ ++ A Q R E+GA+ + E +
Sbjct: 511 NSIIRPTYMLTY-ESASELLHLNLEEE--AELKLLSEAAFIRSQWRREQGAVDTTTLETR 567
Query: 283 FQI-DTETHDPLDIGMYQIREAN---QMVEEFMLAANVSVA 319
++ + E +PL I +Y +A+ ++V E M+ VA
Sbjct: 568 IKVVNPEDPEPL-INLYVENQADLAMRLVFEMMILCGEVVA 607
Score = 83 (34.3 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 34/124 (27%), Positives = 53/124 (42%)
Query: 409 HYGLAAPLYTHFTSPIRRYADVVVHRLLSASL-GIYKLPSVFQDRPQLTSIADNLNYRHR 467
H L P Y FTSPIRRY D+ H + A L G P F +L IA ++N + +
Sbjct: 662 HGVLGIPGYVQFTSPIRRYMDLTAHYQIKAFLRGGDNFP--FS-AGELEGIAASVNMQSK 718
Query: 468 NAQMASRGSVELHTLIYFR-----KRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPR 522
+ S + + + R K+ T R VK R ++ + G + +++
Sbjct: 719 VVRKLSNTGLRYWVIEFLRRQEKGKKYTALVLRFVKDRIASLLLV--EVGFQATAWVSEG 776
Query: 523 GQKG 526
Q G
Sbjct: 777 KQVG 780
>UNIPROTKB|Q9BYK8 [details] [associations]
symbol:HELZ2 "Helicase with zinc finger domain 2"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid
metabolic process" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] Reactome:REACT_111217
InterPro:IPR001900 InterPro:IPR003593 InterPro:IPR015880
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS00028 PROSITE:PS50157
SMART:SM00355 SMART:SM00382 SMART:SM00955 GO:GO:0005524
Reactome:REACT_111045 GO:GO:0005654 GO:GO:0044281 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0044255
GO:GO:0006351 GO:GO:0003723 GO:GO:0004386 GO:GO:0004540
GO:GO:0030374 eggNOG:COG0557 InterPro:IPR022966 EMBL:AL121829
EMBL:AF517673 EMBL:AB201715 EMBL:AB051556 EMBL:AK074171
EMBL:AK055611 IPI:IPI00249304 IPI:IPI00249305 IPI:IPI00736631
RefSeq:NP_001032412.2 RefSeq:NP_208384.3 UniGene:Hs.517180
ProteinModelPortal:Q9BYK8 IntAct:Q9BYK8 STRING:Q9BYK8
PhosphoSite:Q9BYK8 DMDM:209572784 PaxDb:Q9BYK8 PRIDE:Q9BYK8
GeneID:85441 KEGG:hsa:85441 UCSC:uc002yfl.1 UCSC:uc002yfm.2
CTD:85441 GeneCards:GC20M062189 HGNC:HGNC:30021 HPA:HPA051267
MIM:611265 neXtProt:NX_Q9BYK8 HOGENOM:HOG000231856
HOVERGEN:HBG080465 InParanoid:Q9BYK8 OMA:FRAAHIM PhylomeDB:Q9BYK8
GenomeRNAi:85441 NextBio:76020 ArrayExpress:Q9BYK8 Bgee:Q9BYK8
Genevestigator:Q9BYK8 GermOnline:ENSG00000130589
PANTHER:PTHR10887:SF16 Uniprot:Q9BYK8
Length = 2649
Score = 202 (76.2 bits), Expect = 5.2e-18, Sum P(2) = 5.2e-18
Identities = 76/243 (31%), Positives = 113/243 (46%)
Query: 111 RLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKR 170
R D R F+VDP G ++DDAL L EV VHI DV +FV LD EA ++
Sbjct: 1334 REDCRAFLTFTVDPQGACNLDDALSVRDLGP-RCEVAVHITDVASFVPRDGVLDVEARRQ 1392
Query: 171 GTSVYLVERR-IDMLPKPLTEDICSLRADVERLAFSVIWELTPEA-EIISTRYTKSVIKS 228
G + Y R + MLP L +D+ SL +RLA S+ + + ++ S R+ SV++S
Sbjct: 1393 GAAFYAPGREPVPMLPASLCQDVLSLLPGRDRLAISLFLTMEKASGQLKSLRFAPSVVQS 1452
Query: 229 CAALSYVEAQA--RMDDSRLMD-PLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQI 285
LSY EA+ R + P D + +A R + R L +
Sbjct: 1453 DRQLSYEEAEEVIRQHPGAGRELPARLDSVDACVVAACYFSRLLRRHRL---------RS 1503
Query: 286 DTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSL--LRRHPSPTKEML 343
D P + G R A+ MV+E+M+ N VAE ++ ++ LR P+P + L
Sbjct: 1504 DCFYEQPDEDGTLGFRAAHIMVKEYMIQFNRLVAEFLVGSECTRTVTPLRWQPAPRSQQL 1563
Query: 344 EPL 346
+ L
Sbjct: 1564 KAL 1566
Score = 112 (44.5 bits), Expect = 5.2e-18, Sum P(2) = 5.2e-18
Identities = 29/93 (31%), Positives = 44/93 (47%)
Query: 409 HYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRN 468
HY L YT TSPIRRY DVV+ R + +LG S + R + + + +H
Sbjct: 1660 HYSLQVDWYTWATSPIRRYLDVVLQRQILLALG--HGGSAYSAR-DIDGLCQAFSLQHAL 1716
Query: 469 AQMASRGSVELHTLIYFRKRPTDTEARIVKIRS 501
AQ R + LH + + +P D +V + +
Sbjct: 1717 AQSYQRRARSLHLAVQLKAQPLDKLGFVVDVEA 1749
>UNIPROTKB|F1RMM8 [details] [associations]
symbol:LOC100519780 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0045944 "positive regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001900 InterPro:IPR003593
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS50103 SMART:SM00382
SMART:SM00955 GO:GO:0005524 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0004540 InterPro:IPR022966 PROSITE:PS01175
OMA:FRAAHIM PANTHER:PTHR10887:SF16 GeneTree:ENSGT00550000074391
EMBL:FP102633 Ensembl:ENSSSCT00000003670 Uniprot:F1RMM8
Length = 2879
Score = 208 (78.3 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 100/344 (29%), Positives = 157/344 (45%)
Query: 7 SGSVAHALFVP--KDR-RIPKIRI---QTRQLG-NLLD---KR---IIVAVDSWDCQSRY 53
+GSV +FVP KDR R+P R+ + +++G L +R V V W + Y
Sbjct: 1406 NGSVTK-IFVPGLKDRLRVPVHRLLQGRVQRVGYEQLSAEARRHWFFRVRVILWRERFYY 1464
Query: 54 PFGHYVRVIGEIGDRDTESEMVLIDNDID-ARPFSTQVLACLPPLPWSVSSEDLANPIRL 112
P G ++V+ E + ++ ++ + A P V L +S R
Sbjct: 1465 PLGVILKVLPEATTWEQGLRILRLEYGLKGASPDPASVYKALQMYQKELSR---VPGCRE 1521
Query: 113 DLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGT 172
D R F+VDP G D+DDAL L S +EV VHIADV + V LD EA +RG+
Sbjct: 1522 DCRSFPTFTVDPQGAFDLDDALSVRDLGS-MYEVAVHIADVASCVPRDGALDLEARRRGS 1580
Query: 173 SVYLV-ERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAA 231
++Y + + MLP L++D SL +RL S+ ++ S R+ SVI+S
Sbjct: 1581 TLYAPGQEPVHMLPAVLSQDAFSLLPGRDRLTISLFLTEKGSDQLKSLRFAPSVIRSDRQ 1640
Query: 232 LSYVEAQ--------ARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKF 283
+SY EA+ A + +D L + ++ +R+RR+ G E
Sbjct: 1641 MSYEEAEQVIRSHPRAGCELPARLDSLDACVAAAYHFSRVLRRRRLHDGC----HYE--- 1693
Query: 284 QIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFP 327
Q D ++ +G REA M++E+M+ N VA ++ P
Sbjct: 1694 QPDEDSA----LGF---REARIMIKEYMVQYNSLVAAFLVADGP 1730
Score = 90 (36.7 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 409 HYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGI 442
H+ L A YT TSPIRRY DVV+ R + +LG+
Sbjct: 1846 HFALEAEWYTWATSPIRRYVDVVLQRQILRALGL 1879
>GENEDB_PFALCIPARUM|PFF0745c [details] [associations]
symbol:PFF0745c "ribonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0006396 "RNA processing"
evidence=ISS] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
GO:GO:0003723 GO:GO:0004540 EMBL:AL844505 InterPro:IPR022966
PROSITE:PS01175 InterPro:IPR013223 Pfam:PF08206 RefSeq:XP_966140.2
EnsemblProtists:PFF0745c:mRNA GeneID:3885866 KEGG:pfa:PFF0745c
EuPathDB:PlasmoDB:PF3D7_0615400 Uniprot:C6KSZ5
Length = 2733
Score = 159 (61.0 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 52/193 (26%), Positives = 91/193 (47%)
Query: 254 LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLA 313
L +M+ + K R R + G++ + ++ F I + + P+ I + +N M+EE ML+
Sbjct: 2366 LYDMHKITKGARNIRRKNGSMFFNNDKINF-ILSNSRSPIGIVRKKYTFSNYMIEELMLS 2424
Query: 314 ANVSVA-EQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRA 372
AN +A Q ++ S+ R H L ++ ++ + + + LD
Sbjct: 2425 ANKLIAIRQYFSKYRDISVFRSHNLNDAIDLNDIMDLLKKSDIHFEFHDLRQIMKFLDEK 2484
Query: 373 VGDDPYF----NKLIRILAT---RCMTQAVYFCSGDLTPPEF--HHYGLAAPLYTHFTSP 423
YF N + I++ + M +A Y + +HY L+ LYTHFTSP
Sbjct: 2485 ---KKYFKQKKNNVYDIVSAYLKKKMIRAEYHTYKYIKDNNMSTYHYALSFLLYTHFTSP 2541
Query: 424 IRRYADVVVHRLL 436
IRRY D++VHR++
Sbjct: 2542 IRRYPDILVHRVI 2554
Score = 137 (53.3 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 32/95 (33%), Positives = 50/95 (52%)
Query: 144 FEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLA 203
+EVGVHI DV+ F+ + LD +A R ++YL M+ K L+E++CSL RL
Sbjct: 1983 YEVGVHITDVSFFIKENSSLDIDARNRAMTIYLTHTCFPMISKILSEELCSLDPVNNRLC 2042
Query: 204 FSVIWELTPEAEIISTRY--TKSVIKSCAALSYVE 236
S+ + + +I + +S+I S SY E
Sbjct: 2043 LSIFFYMDSSGKIDHNSFFIKESIINSKVKFSYEE 2077
Score = 101 (40.6 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 41/204 (20%), Positives = 86/204 (42%)
Query: 16 VPKDRRIPKIRIQTRQLGNLLDKRIIVAVDS---------WDCQSRYPFGHYVRVIGEIG 66
+P + IP I++ + ++K I + + WD YP G V ++G+
Sbjct: 1293 IPFKKNIPLIKVLNEDIIKFMNKYNICDISNQLVYIKIFVWDINDTYPEGKIVEILGQND 1352
Query: 67 DRDTESEMVLIDNDIDAR---PFSTQVLACLPPLPW--SVSSEDLANPIRLDLRDLRVFS 121
+L++++++ Q L L + SE + R DL + +F+
Sbjct: 1353 IFHNMQNAILLNHNLNFNLKDALEDQYLKDLKNKDTYKQIISEQIKK--RTDLTNTCIFT 1410
Query: 122 VDPPGCKDIDDALHCTALSSGNF-EVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERR 180
+DP +D+DDA++ +S +I V N + +++ K+ S+Y +
Sbjct: 1411 IDPDTARDLDDAININKISRKKIMSSNYYIQIVHNLIAHNGDIEELILKKNISLYKNDHD 1470
Query: 181 IDMLPKPLTEDICSLRADVERLAF 204
+ L ++ C L+ D+E + +
Sbjct: 1471 NNFFEN-LKKNTC-LK-DIENVKY 1491
>DICTYBASE|DDB_G0288469 [details] [associations]
symbol:DDB_G0288469 species:44689 "Dictyostelium
discoideum" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 dictyBase:DDB_G0288469 GO:GO:0003723
EMBL:AAFI02000111 GO:GO:0004540 eggNOG:COG0557 RefSeq:XP_636708.1
ProteinModelPortal:Q54IW8 EnsemblProtists:DDB0219344 GeneID:8626640
KEGG:ddi:DDB_G0288469 InParanoid:Q54IW8 OMA:FEMERES
ProtClustDB:CLSZ2429881 Uniprot:Q54IW8
Length = 960
Score = 177 (67.4 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 67/252 (26%), Positives = 121/252 (48%)
Query: 76 LID--NDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDA 133
LID N ++ P T+V L S++S + N R+ + D + F++D KD+DDA
Sbjct: 501 LIDPPNHLNDLPIGTKVDKNENIL--SINSI-IDNDGRIIIND-KSFAIDSESTKDVDDA 556
Query: 134 LHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDIC 193
+ +G + V VHIADVT+ V P + D + +S+YL + MLP +T +
Sbjct: 557 IGLIDEGNGEYSVIVHIADVTDIVKPHSDHDKWGQFKSSSIYLPHKTYFMLPNSITNHL- 615
Query: 194 SLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTD 253
SL + S ++++ + EII + S++ + SY + + + DS +
Sbjct: 616 SLSPNKSNKCLSFQFKVSNKGEIIDYKIFPSIVNNLIKTSYNKVENSLLDSNSSNNNKNT 675
Query: 254 LRNMNSLA--KKM-------RQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIRE-- 302
+ +++ + KK+ ++RR + +K +D + +D+ Q RE
Sbjct: 676 IHSIDEIKQLKKLFEISTLLKERREINKPYRIDLPSIKINVDN--NGLIDVCQDQ-RENE 732
Query: 303 -ANQMVEEFMLA 313
+NQ+V EFM+A
Sbjct: 733 ISNQLVSEFMIA 744
Score = 91 (37.1 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 399 SGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASL 440
SG+++ H+ LA YT TSPIRRY D++VH + + L
Sbjct: 798 SGEVSISNIGHHSLALDNYTWATSPIRRYPDIIVHSQIKSFL 839
>ZFIN|ZDB-GENE-070912-617 [details] [associations]
symbol:si:dkey-97a13.6 "si:dkey-97a13.6"
species:7955 "Danio rerio" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001900 InterPro:IPR003593 InterPro:IPR026855
Pfam:PF00773 SMART:SM00382 SMART:SM00955 ZFIN:ZDB-GENE-070912-617
GO:GO:0005524 GO:GO:0003723 GO:GO:0004386 GO:GO:0004540
PANTHER:PTHR10887:SF16 GeneTree:ENSGT00550000074391 EMBL:BX663525
IPI:IPI00499390 RefSeq:XP_699251.2 UniGene:Dr.89869
Ensembl:ENSDART00000017829 GeneID:570654 KEGG:dre:570654
NextBio:20890238 Uniprot:E7F3B1
Length = 2781
Score = 207 (77.9 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 73/244 (29%), Positives = 117/244 (47%)
Query: 111 RLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKR 170
R D L+ F+VDPP + +DDA+ L S +E+GVH+ADV +FV + +D A
Sbjct: 1255 RKDFTGLKTFTVDPPNAEVLDDAISINDLGSC-YEIGVHVADVASFVSKDSSIDAFAKDM 1313
Query: 171 GTSVYLVERR-IDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTR-YTKSVIKS 228
G + Y + M PK L+ SL +R A S+I E+ ++ +I+ + + S++KS
Sbjct: 1314 GATFYAPGKEPAFMFPKHLSTTCWSLLPGKDRKAISLIVEVEKQSGVITKKTFDLSMVKS 1373
Query: 229 CAALSYVEAQ---ARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQI 285
L+Y EA+ + D D L +R A+ R+ R++ + A K Q
Sbjct: 1374 KRQLTYNEAEDIICQCDGELRFDTLEDCVRVAYHFARSQRKTRLKED-WSYAQLN-KHQK 1431
Query: 286 DTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFP---LCSLLRRHPSPTKEM 342
E REA++M+EE + N V++ L ++ C+ LR SP E
Sbjct: 1432 PGE------------REAHRMIEELNIMFNHEVSK-FLSEYTDTKSCTPLRCQDSPNAEA 1478
Query: 343 LEPL 346
LE +
Sbjct: 1479 LEKI 1482
Score = 40 (19.1 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 516 PVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQ 552
P+YL R + +G ++E Q K ++ N ++++Q
Sbjct: 2274 PLYLLMREEAPAGLPQLNESQFKALEKALNGKFTIIQ 2310
>UNIPROTKB|I3LNA8 [details] [associations]
symbol:I3LNA8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 GO:GO:0003723 GO:GO:0004540
GeneTree:ENSGT00530000063106 EMBL:CU861482 EMBL:CU467781
Ensembl:ENSSSCT00000026675 OMA:KFHEDEL Uniprot:I3LNA8
Length = 146
Score = 159 (61.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 37/109 (33%), Positives = 64/109 (58%)
Query: 183 MLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMD 242
MLP+ L E++CSL ++L FSVIW LTP +I+S + ++VI+SC LSY AQ+ ++
Sbjct: 1 MLPRLLCEELCSLNPMTDKLTFSVIWTLTPRGKILSEWFGRTVIRSCTKLSYEHAQSMIE 60
Query: 243 D------SRLMDPLTTD---------LRNMNSLAKKMRQRRIERGALTL 276
+ + P++ + + ++ +AK++R++R GAL L
Sbjct: 61 SPTRKIPEKELPPISPEHSGEEVHRAVLTLHGIAKELRKQRFADGALRL 109
>ASPGD|ASPL0000038338 [details] [associations]
symbol:AN9151 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 EMBL:BN001306
GO:GO:0003723 GO:GO:0004540 EnsemblFungi:CADANIAT00009455
OMA:WIHVHVA Uniprot:C8VK46
Length = 1050
Score = 136 (52.9 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 38/150 (25%), Positives = 79/150 (52%)
Query: 105 DLANPIRLDLRDLRVFSVDPPGCKDIDDALHCTAL-SSGNFEVGVHIADVTNFVHPGTPL 163
D +R D +L V+ VD ++IDD + + S +F + VH+A+ +++++ G L
Sbjct: 547 DAMAALRKDWGELPVYCVDAIDAQEIDDGISLERIPGSDSFWIHVHVANPSSYLNVGHRL 606
Query: 164 DDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTK 223
+ A+ R ++Y+ ER +LP LT++ SL L FS +L + +++ + T
Sbjct: 607 IEYAAARLQTLYVPERTYPILPPSLTQEHFSLAPGRPCLTFSA--KLNLQGQVLESNVTN 664
Query: 224 SVIKSCAALSYVEAQA--RMDDSRLMDPLT 251
V+++ +++ + ++ ++ M PLT
Sbjct: 665 GVVRNVKYITHDKLRSVFGVEADSSMKPLT 694
Score = 77 (32.2 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 408 HHYGLAAPLYTHFTSPIRRYADVVVHRLLSASL 440
HH L Y TSP+RRY+D++ H + A+L
Sbjct: 863 HHIPLGLDAYVKSTSPLRRYSDLLAHYQIEAAL 895
>SGD|S000004900 [details] [associations]
symbol:DSS1 "3'-5' exoribonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0008859 "exoribonuclease II
activity" evidence=IEA;IDA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0000957 "mitochondrial RNA
catabolic process" evidence=IMP] [GO:0045025 "mitochondrial
degradosome" evidence=IDA] [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0005759 "mitochondrial matrix" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 SGD:S000004900 GO:GO:0005759
GO:GO:0003723 EMBL:BK006946 EMBL:Z49704 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 BRENDA:3.1.13.1 EMBL:U15461
EMBL:D90217 PIR:S54594 RefSeq:NP_014014.1 ProteinModelPortal:P39112
DIP:DIP-2936N IntAct:P39112 MINT:MINT-547765 STRING:P39112
PaxDb:P39112 EnsemblFungi:YMR287C GeneID:855331 KEGG:sce:YMR287C
CYGD:YMR287c OMA:VFCIDSE OrthoDB:EOG4FBN29 NextBio:979055
Genevestigator:P39112 GermOnline:YMR287C GO:GO:0045025
GO:GO:0008859 GO:GO:0000957 Uniprot:P39112
Length = 969
Score = 103 (41.3 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 38/133 (28%), Positives = 58/133 (43%)
Query: 91 LACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDALHCTALS-SGNFEVGVH 149
L + L W S D R D DLRVF +D +IDD + G + + +H
Sbjct: 505 LTNIEELQWKKSGTD---DDRYDFGDLRVFCIDSETAHEIDDGVSVKNYGRDGLYTLYIH 561
Query: 150 IADVTNFVHPGTPLDDE---------ASKRGTSVYLVERRIDMLPKPLTE--DICSLRAD 198
IAD T+ T +D E A KR + YL + + MLP+ + D+
Sbjct: 562 IADPTSMFPESTNVDIEGISTDILNVALKRSFTTYLPDTVVPMLPQSICHLSDLGKQGQR 621
Query: 199 VERLAFSVIWELT 211
+ ++FSV ++T
Sbjct: 622 TKTISFSVDVKIT 634
Score = 94 (38.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 31/103 (30%), Positives = 47/103 (45%)
Query: 407 FHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRH 466
F H + A Y TSP+RR+ D++ H L + K P F ++ Q+ S+ + R
Sbjct: 819 FRHEMIGAKQYLTVTSPLRRFPDLINH--LQIHRHLQKKPLCF-NQTQIDSLIWPIQSRA 875
Query: 467 RNAQMASRGSVELHTLIYFRK----RPTDT-EARIVKIRSNGF 504
+ ASR S TL Y +K P T + + + NGF
Sbjct: 876 DILKRASRNSSTYWTLNYLKKLTKLEPERTFDVMVTSVPQNGF 918
>UNIPROTKB|G4MRS6 [details] [associations]
symbol:MGG_13800 "Mitochondrial protein cyt-4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0003723 EMBL:CM001231 GO:GO:0043581
GO:GO:0004540 RefSeq:XP_003710903.1 ProteinModelPortal:G4MRS6
EnsemblFungi:MGG_13800T0 GeneID:5049017 KEGG:mgr:MGG_13800
Uniprot:G4MRS6
Length = 1091
Score = 118 (46.6 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 55/256 (21%), Positives = 106/256 (41%)
Query: 111 RLDLRDLRVFSVDPPGCKDIDDALHCTALSS-GNFEVGVHIADVTNFVHPGTPLDDEASK 169
R D DL F++D +DIDDA+ S+ G + + VH+ADV + V P + A K
Sbjct: 548 RKDWGDLTAFAIDDAKTEDIDDAVSVERTSTAGQYWIHVHVADVASIVRPNSAHAQYAEK 607
Query: 170 RGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSC 229
+ Y MLP SL L FS + + + E++ + T +++
Sbjct: 608 LSETHYYPGHFARMLPDLGILQHLSLAPGSRALTFSGL--VNEKGELLECKITPGILRKV 665
Query: 230 AALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGAL-TLASAEVKFQIDTE 288
+ E A++ + P TT N ++L + QR G+ T + ++K D +
Sbjct: 666 VNIEPAEV-AKVCP-QTPQPETT---NGSALTLCVGQRS---GSFYTPTNKKIKSADDLD 717
Query: 289 THDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLR 348
H+ D+ + + + L + S R++ + + + + + R
Sbjct: 718 AHEVEDLKLLDRLATSYYLRR--LENHASPDRTFKREYRVAPEIWPASTQFERASDGTFR 775
Query: 349 TAAAVGLNLDVSSSKA 364
++ + +N+ + S A
Sbjct: 776 SSGDIAINVGIQSDAA 791
Score = 73 (30.8 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 409 HYGLAAPLYTHFTSPIRRYADVVVHRLLSASL 440
H+ L Y TSP+RRY D+V H + A+L
Sbjct: 877 HFWLGLKHYVKVTSPLRRYLDIVAHFQIHAAL 908
>CGD|CAL0000344 [details] [associations]
symbol:orf19.3624 species:5476 "Candida albicans" [GO:0045025
"mitochondrial degradosome" evidence=IEA] [GO:0008859
"exoribonuclease II activity" evidence=IEA] [GO:0000957
"mitochondrial RNA catabolic process" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 CGD:CAL0000344
GO:GO:0003723 GO:GO:0004540 eggNOG:COG0557 EMBL:AACQ01000103
RefSeq:XP_714466.1 ProteinModelPortal:Q59Y25 GeneID:3643919
KEGG:cal:CaO19.3624 Uniprot:Q59Y25
Length = 1146
Score = 118 (46.6 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 23/95 (24%), Positives = 52/95 (54%)
Query: 101 VSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPG 160
+ +ED +R D+R++ ++ +D P +IDD + ++ V +H+A+ ++++ P
Sbjct: 630 IYNEDPLQHLRQDMREIPIYCIDDPTAHEIDDGISIHE-DQQDYIVSIHVAEPSSYIKPN 688
Query: 161 TPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSL 195
+ + A ++ ++ Y+ + +LPK L DI L
Sbjct: 689 SIISSLAFEKTSTSYMPDTAFPLLPK-LVSDIAGL 722
Score = 69 (29.3 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 386 LATRCMTQAV-YFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVV 431
+ T +TQ +F G +T H + +Y++ TSP+RRY D+V
Sbjct: 951 IPTDQLTQMFPFFTRGLVTDKPQKHLLMGLSMYSNITSPLRRYIDLV 997
>POMBASE|SPCC1322.01 [details] [associations]
symbol:rpm1 "3'-5' exonuclease for RNA 3' ss-tail"
species:4896 "Schizosaccharomyces pombe" [GO:0000965 "mitochondrial
RNA 3'-end processing" evidence=IMP] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005759
"mitochondrial matrix" evidence=ISO] [GO:0008859 "exoribonuclease
II activity" evidence=ISO] [GO:0006401 "RNA catabolic process"
evidence=IMP] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
PomBase:SPCC1322.01 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005759 GO:GO:0003723 eggNOG:COG0557 GO:GO:0008859
GO:GO:0000965 RefSeq:NP_588129.2 ProteinModelPortal:Q1MTN7
STRING:Q1MTN7 EnsemblFungi:SPCC1322.01.1 GeneID:2538798
KEGG:spo:SPCC1322.01 OrthoDB:EOG4NKG3S NextBio:20799980
Uniprot:Q1MTN7
Length = 957
Score = 130 (50.8 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 38/131 (29%), Positives = 65/131 (49%)
Query: 111 RLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKR 170
R+DLR L+ F+ D K+IDDA+ L N + +H+A+ T+ V +PL A +
Sbjct: 503 RVDLRHLKAFAFDSSSTKEIDDAISVEELGMSNSWLHIHVANPTSTVDIRSPLGTFAERN 562
Query: 171 GTSVYLVERRIDMLPKPLTEDICSLRAD--VER-LAFSVIWELTPEAEIISTRYTKSVIK 227
++Y + + MLP +T+ SL + +R L FS +++ +I+ + S I
Sbjct: 563 FQTIYHPNKIVYMLPLNITQKYWSLDSSSTAQRALTFSA--KISKNGDILDYKVRPSFIS 620
Query: 228 SCAALSYVEAQ 238
S + Y Q
Sbjct: 621 S--VIKYTPQQ 629
Score = 54 (24.1 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 397 FCSGDLTPPEFHHYGLAAPL-YTHFTSPIRRYADVVVHRLLSASL 440
F S L H+ L Y TSP+RR+ D H + + L
Sbjct: 799 FESSHLASTPVSHFSLGLKDGYIQSTSPLRRFTDFFTHHQIQSVL 843
Score = 40 (19.1 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 430 VVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGS 476
++ R+ S +KLP +F+ +P I D + + +++R S
Sbjct: 739 ILAGRVSSLFFQEHKLPGIFRGQPY--PIMDGVRRKAFETLLSNRSS 783
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.403 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 575 575 0.00080 120 3 11 22 0.37 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 86
No. of states in DFA: 615 (65 KB)
Total size of DFA: 305 KB (2158 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 47.39u 0.13s 47.52t Elapsed: 00:00:02
Total cpu time: 47.41u 0.13s 47.54t Elapsed: 00:00:02
Start: Tue May 21 08:14:50 2013 End: Tue May 21 08:14:52 2013