BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008167
(575 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CSH3|RRP44_MOUSE Exosome complex exonuclease RRP44 OS=Mus musculus GN=Dis3 PE=2 SV=4
Length = 958
Score = 586 bits (1511), Expect = e-166, Method: Compositional matrix adjust.
Identities = 287/564 (50%), Positives = 397/564 (70%), Gaps = 17/564 (3%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
LF P D+RIP+IRI+TRQ L +RIIVA+D W SRYP GH+V+ +G++G+++TE+E
Sbjct: 372 LFTPADKRIPRIRIETRQASALEGRRIIVAIDGWPRNSRYPNGHFVKNLGDVGEKETETE 431
Query: 74 MVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDA 133
++L+++D+ +PFS VL+ LP +PWS++ ED+ N R DLR L V SVDPPGC DIDDA
Sbjct: 432 VLLLEHDVPHQPFSQAVLSFLPRMPWSITEEDMKN--REDLRHLCVCSVDPPGCTDIDDA 489
Query: 134 LHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDIC 193
LHC LS+GN EVGVHIADV++F+ PG LD E+++RGT+VYL E+RIDM+P+ L+ ++C
Sbjct: 490 LHCRELSNGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLC 549
Query: 194 SLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTD 253
SLR++V+RLAFS IWE+ AEI+ TR+TKSVI S A+L+Y EAQ R+D + + D +TT
Sbjct: 550 SLRSNVDRLAFSCIWEMNHNAEILKTRFTKSVINSKASLTYAEAQMRIDSAAMNDDITTS 609
Query: 254 LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLA 313
LR +N LAK +++ RIE+GALTL+S E++F +D+ETHDP+D+ ++RE N MVEEFML
Sbjct: 610 LRGLNQLAKILKKGRIEKGALTLSSPEIRFHMDSETHDPIDLQTKELRETNSMVEEFMLL 669
Query: 314 ANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAV 373
AN+SVA++I +F +LLR+HP+P + L++ A + L + ++K+LADSLDRA
Sbjct: 670 ANISVAKKIHEEFSEHALLRKHPAPPPSNYDILVKAAKSKNLQIKTDTAKSLADSLDRAE 729
Query: 374 GDD-PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVV 432
D PY N L+RILATRCM QAVYFCSG +FHHYGLA+P+YTHFTSPIRRYAD++V
Sbjct: 730 SPDFPYLNTLLRILATRCMMQAVYFCSG--MDNDFHHYGLASPIYTHFTSPIRRYADIIV 787
Query: 433 HRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRP-TD 491
HRLL+ ++G D+ +L+ I NLN+RH+ AQ A R SV HT ++F+ +
Sbjct: 788 HRLLAVAIGADCTYPELTDKHKLSDICKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVS 847
Query: 492 TEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDE-----------QQQKIV 540
EA I+ +R N +V +PK+G+EG V+ + + Y DE V
Sbjct: 848 EEAYILFVRKNAIVVLIPKYGLEGTVFFEEKDKPKPRLAYDDEIPSLRIEGTVFHVFDKV 907
Query: 541 KMDGNLSYSVLQTVNIHMEVVEPQ 564
K+ L S LQ I M +VEPQ
Sbjct: 908 KVKITLDSSNLQHQKIRMALVEPQ 931
>sp|Q9Y2L1|RRP44_HUMAN Exosome complex exonuclease RRP44 OS=Homo sapiens GN=DIS3 PE=1 SV=2
Length = 958
Score = 583 bits (1503), Expect = e-165, Method: Compositional matrix adjust.
Identities = 287/564 (50%), Positives = 396/564 (70%), Gaps = 17/564 (3%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
LF P D+RIP+IRI+TRQ L +RIIVA+D W SRYP GH+VR +G++G+++TE+E
Sbjct: 372 LFTPADKRIPRIRIETRQASTLEGRRIIVAIDGWPRNSRYPNGHFVRNLGDVGEKETETE 431
Query: 74 MVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDA 133
++L+++D+ +PFS VL+ LP +PWS++ +D+ N R DLR L + SVDPPGC DIDDA
Sbjct: 432 VLLLEHDVPHQPFSQAVLSFLPKMPWSITEKDMKN--REDLRHLCICSVDPPGCTDIDDA 489
Query: 134 LHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDIC 193
LHC L +GN EVGVHIADV++F+ PG LD E+++RGT+VYL E+RIDM+P+ L+ ++C
Sbjct: 490 LHCRELENGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLC 549
Query: 194 SLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTD 253
SL+ DV+RLAFS IWE+ AEI+ T++TKSVI S A+L+Y EAQ R+D + + D +TT
Sbjct: 550 SLKCDVDRLAFSCIWEMNHNAEILKTKFTKSVINSKASLTYAEAQLRIDSANMNDDITTS 609
Query: 254 LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLA 313
LR +N LAK +++RRIE+GALTL+S EV+F +D+ETHDP+D+ ++RE N MVEEFML
Sbjct: 610 LRGLNKLAKILKKRRIEKGALTLSSPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLL 669
Query: 314 ANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAV 373
AN+SVA++I +F +LLR+HP+P E L++ A + L + ++K+LA+SLD+A
Sbjct: 670 ANISVAKKIHEEFSEHALLRKHPAPPPSNYEILVKAARSRNLEIKTDTAKSLAESLDQAE 729
Query: 374 GDD-PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVV 432
PY N L+RILATRCM QAVYFCSG +FHHYGLA+P+YTHFTSPIRRYADV+V
Sbjct: 730 SPTFPYLNTLLRILATRCMMQAVYFCSG--MDNDFHHYGLASPIYTHFTSPIRRYADVIV 787
Query: 433 HRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRP-TD 491
HRLL+ ++G D+ +L I NLN+RH+ AQ A R SV HT ++F+ +
Sbjct: 788 HRLLAVAIGADCTYPELTDKHKLADICKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVS 847
Query: 492 TEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDE-QQQKI----------V 540
EA I+ +R N +V +PK+G+EG V+ + + Y DE KI V
Sbjct: 848 EEAYILFVRKNAIVVLIPKYGLEGTVFFEEKDKPNPQLIYDDEIPSLKIEDTVFHVFDKV 907
Query: 541 KMDGNLSYSVLQTVNIHMEVVEPQ 564
K+ L S LQ I M +VEPQ
Sbjct: 908 KVKIMLDSSNLQHQKIRMSLVEPQ 931
>sp|Q17632|RRP44_CAEEL Probable exosome complex exonuclease RRP44 OS=Caenorhabditis
elegans GN=dis-3 PE=3 SV=2
Length = 961
Score = 550 bits (1416), Expect = e-155, Method: Compositional matrix adjust.
Identities = 277/577 (48%), Positives = 383/577 (66%), Gaps = 6/577 (1%)
Query: 1 MPMPAGSGSVAHALFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVR 60
M +P+ LF P +R IP+IRI+T Q L +RI+VA+D W S+YP GHYVR
Sbjct: 368 MLLPSTVKGARRHLFCPAERLIPRIRIETEQAETLSQQRIVVAIDHWPRDSKYPLGHYVR 427
Query: 61 VIGEIGDRDTESEMVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPI-RLDLRDLRV 119
IGE+G R+TE+E++L+++DI PFS VL CLP W + P+ R+DLRDL +
Sbjct: 428 SIGEMGSRETENEVLLLEHDIPHAPFSESVLDCLPREEWEPDLTENRGPLPRVDLRDLTI 487
Query: 120 FSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVER 179
SVDP GC DIDDALHC + FEVGVHIADVT+FV PGT +DDEA+ RGT+VYL +R
Sbjct: 488 CSVDPLGCTDIDDALHCKQIGEDLFEVGVHIADVTHFVRPGTAIDDEAALRGTTVYLCDR 547
Query: 180 RIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQA 239
RIDMLP L+ ++CSLR + ER AFS IW +T A+I S +Y KS+IKS AAL+Y +AQ
Sbjct: 548 RIDMLPCLLSSNLCSLRGEEERYAFSCIWTMTSSADIQSVKYHKSLIKSKAALTYEKAQE 607
Query: 240 RMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQ 299
+DD + + + LR + L+K + RR GALTLAS+EV+F +D E+ P + Q
Sbjct: 608 IIDDPKEQNDVALGLRGLMKLSKVLNARRTGNGALTLASSEVRFDMDWESRTPKKVMEKQ 667
Query: 300 IREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDV 359
+ + MVEEFML AN+SVAE+IL ++P C+LLRRHP P KE +PL+ A G + V
Sbjct: 668 HLDTHSMVEEFMLLANISVAEKILEEYPDCALLRRHPVPLKESYKPLVEAARHRGFEIIV 727
Query: 360 SSSKALADSLDRAV-GDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYT 418
S K LADSL+R V +P N+L+R+L TRCMTQAVYF +G + P++ H+GLA +YT
Sbjct: 728 ESGKGLADSLNRCVDKKNPMLNRLLRMLTTRCMTQAVYFSAGTVPVPQYQHFGLACAIYT 787
Query: 419 HFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVE 478
HFTSPIRRYADV+VHRLL+A++G + S ++ + T I N+NYRH+ AQ A R SV+
Sbjct: 788 HFTSPIRRYADVIVHRLLAAAIGADDIQSGLLNQARCTKICTNINYRHKQAQYAGRASVQ 847
Query: 479 LHTLIYFRKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQK 538
L+ + YF+ + E ++ +R+NG VFVPK+G+E + L G+ +D ++
Sbjct: 848 LNVVRYFKGKVETCEGFVMGVRNNGIQVFVPKYGLESIIVLQTSAASGTT---IDVEEMS 904
Query: 539 IVKMDGNLSYSVLQTVNIHMEVVEPQPNRPKLQLTLI 575
VK++G++ L+ V + + V E RP+++L LI
Sbjct: 905 -VKVNGDVVIKELEPVTVRISVNEKNQQRPRVELQLI 940
>sp|P37202|DIS3_SCHPO Exosome complex exonuclease dis3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dis3 PE=1 SV=1
Length = 970
Score = 533 bits (1374), Expect = e-150, Method: Compositional matrix adjust.
Identities = 274/587 (46%), Positives = 379/587 (64%), Gaps = 19/587 (3%)
Query: 5 AGSGSVAHALFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGE 64
+ GS L P DRR+PKIR +TRQ L+ +RI+VA+D WD SRYP GH+VR +GE
Sbjct: 386 SKGGSQQTVLLTPMDRRVPKIRFRTRQAPRLVGRRIVVAIDLWDASSRYPEGHFVRDLGE 445
Query: 65 IGDRDTESEMVLIDNDIDARPFSTQVLACLPP--LPWSVSSEDLANPI---RLDLRDLRV 119
+ ++ E+E +L++ D+ RPF VL CLP W V + D +P+ R D RD +
Sbjct: 446 METKEAETEALLLEYDVQHRPFPKAVLDCLPEEGHNWKVPA-DKTHPLWKNRKDFRDKLI 504
Query: 120 FSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVER 179
S+DPPGC+DIDDALH L +GN+EVGVHIADVT+FV P T +D EA+ RGT+VYLV++
Sbjct: 505 CSIDPPGCQDIDDALHACVLPNGNYEVGVHIADVTHFVKPNTSMDSEAASRGTTVYLVDK 564
Query: 180 RIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQA 239
RIDMLP L D+CSLR VER AFS IWE+ A II +TKSVI S A SY +AQA
Sbjct: 565 RIDMLPMLLGTDLCSLRPYVERFAFSCIWEMDENANIIKVHFTKSVIASKEAFSYADAQA 624
Query: 240 RMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQ 299
R+DD ++ DPLT +R + L+K ++Q+R++ GAL LAS EV+ Q D ET DP+D+ + Q
Sbjct: 625 RIDDQKMQDPLTQGMRVLLKLSKILKQKRMDEGALNLASPEVRIQTDNETSDPMDVEIKQ 684
Query: 300 IREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSP---TKEMLEPLLRTAAAVGLN 356
+ E N +VEEFML AN+SVA++I FP ++LRRH +P + L+ +LR G++
Sbjct: 685 LLETNSLVEEFMLLANISVAQKIYDAFPQTAVLRRHAAPPLTNFDSLQDILRVCK--GMH 742
Query: 357 LDVSSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAP 415
L +SK+LA SLD V +PYFN L+RIL TRCM A YFCSG PP+F HYGLA+P
Sbjct: 743 LKCDTSKSLAKSLDECVDPKEPYFNTLLRILTTRCMLSAEYFCSGTFAPPDFRHYGLASP 802
Query: 416 LYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRG 475
+YTHFTSPIRRYADV+ HR L+A++ + D+ +L I + +NYRHR AQMA R
Sbjct: 803 IYTHFTSPIRRYADVLAHRQLAAAIDYETINPSLSDKSRLIEICNGINYRHRMAQMAGRA 862
Query: 476 SVELHTLIYFRKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQ--KGSGDWYVD 533
S+E + + + +A ++K+ NGF+VF+ +FG+EG VY + + ++ D
Sbjct: 863 SIEYYVGQALKGGVAEEDAYVIKVFKNGFVVFIARFGLEGIVYTKSLSSVLEPNVEYVED 922
Query: 534 EQQQKIVKMD----GNLSYSVLQTVNIHMEVV-EPQPNRPKLQLTLI 575
E + I D + + Q V + + V + + K+Q+TL+
Sbjct: 923 EYKLNIEIRDQPKPQTVQIQMFQQVRVRVTTVRDEHSGKQKVQITLV 969
>sp|Q08162|RRP44_YEAST Exosome complex exonuclease DIS3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DIS3 PE=1 SV=1
Length = 1001
Score = 501 bits (1289), Expect = e-141, Method: Compositional matrix adjust.
Identities = 256/529 (48%), Positives = 348/529 (65%), Gaps = 19/529 (3%)
Query: 7 SGSVAHALFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIG 66
S S + + D+ +PK+RI+TR+ LLDKRI++++DSW +YP GH+VR +G I
Sbjct: 416 SSSTQNVFVILMDKCLPKVRIRTRRAAELLDKRIVISIDSWPTTHKYPLGHFVRDLGTIE 475
Query: 67 DRDTESEMVLIDNDIDARPFSTQVLACLPPL------------PWSVSSEDLANPIRLDL 114
E+E +L+++D++ RPFS +VL CLP P +VS + L R DL
Sbjct: 476 SAQAETEALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTK-RKDL 534
Query: 115 RDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSV 174
RD + S+DPPGC DIDDALH L +GN+EVGVHIADVT+FV PGT LD E + RGTSV
Sbjct: 535 RDKLICSIDPPGCVDIDDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSV 594
Query: 175 YLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSY 234
YLV++RIDMLP L D+CSL+ V+R AFSVIWEL A I++ + KSVI+S A SY
Sbjct: 595 YLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSY 654
Query: 235 VEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLD 294
+AQ R+DD D LT +R + L+ K++Q+R+E GAL LAS EVK +D+ET DP +
Sbjct: 655 EQAQLRIDDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNE 714
Query: 295 IGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRH---PSPTKEMLEPLLRTAA 351
+ + ++ N +VEEFML AN+SVA +I FP ++LRRH PS E+L +L T
Sbjct: 715 VEIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRK 774
Query: 352 AVGLNLDVSSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHY 410
+ ++L+ SSKALADSLDR V +DPYFN L+RI++TRCM A YF SG + P+F HY
Sbjct: 775 NMSISLE--SSKALADSLDRCVDPEDPYFNTLVRIMSTRCMMAAQYFYSGAYSYPDFRHY 832
Query: 411 GLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQ 470
GLA +YTHFTSPIRRY DVV HR L+ ++G L +D+ ++ I N+N +HRNAQ
Sbjct: 833 GLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQ 892
Query: 471 MASRGSVELHTLIYFRKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYL 519
A R S+E + R + ++K+ +NG +V VPKFG+EG + L
Sbjct: 893 FAGRASIEYYVGQVMRNNESTETGYVIKVFNNGIVVLVPKFGVEGLIRL 941
>sp|A0JN80|DI3L1_BOVIN DIS3-like exonuclease 1 OS=Bos taurus GN=DIS3L PE=2 SV=2
Length = 1053
Score = 404 bits (1037), Expect = e-111, Method: Compositional matrix adjust.
Identities = 232/559 (41%), Positives = 321/559 (57%), Gaps = 45/559 (8%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
L P D RIPKIRI T+Q L D R++V +DSW+ S YP GH+VRV+G IGD + E
Sbjct: 366 LVTPWDYRIPKIRISTQQAEALQDFRVVVRIDSWESTSMYPNGHFVRVLGRIGDLEGEIA 425
Query: 74 MVLIDNDIDARPFSTQVLACLP----PLPWSVSSEDLANPIRLDLRDLR-VFSVDPPGCK 128
+L++N I PFS + +P PW VSS++ R DLR VFS+DP GC+
Sbjct: 426 TILVENSISVVPFSEAQMCEMPVNTPENPWKVSSQEERE--REDLRKTHLVFSIDPSGCE 483
Query: 129 DIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPL 188
D+DD L AL +GN E+GVHIADVT+FV P + +D EA R T+ YL +RR DMLP L
Sbjct: 484 DVDDTLSVRALDNGNLELGVHIADVTHFVAPHSYIDIEARTRATTYYLADRRYDMLPAIL 543
Query: 189 TEDICSLRADVERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDS--- 244
+ D+CSL V+R A SV+WEL + EI Y +++I+S L Y AQ +D +
Sbjct: 544 SADVCSLLGGVDRYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQDLLDGNFSV 603
Query: 245 ----------------RLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTE 288
++ L +R + +A+ +R +R GAL L EV+ Q+D E
Sbjct: 604 VKDIPEFKDLDEKSRQAKLEELVWAIRKLTDIARHIRAKRDSCGALELEGVEVRIQLD-E 662
Query: 289 THDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLR 348
+ D+ Q E ++ V E M+ AN VA++I FP +LLRRHP P +E L
Sbjct: 663 KKNIHDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRRHPPPHQEFFSELRE 722
Query: 349 TAAAVGLNLDVSSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEF 407
A A G +D S+KALADSLD A +DP NKL+R +AT+ M+ A+YF +G EF
Sbjct: 723 CAKAKGFFIDTRSNKALADSLDNANDPNDPIVNKLLRSMATQAMSNALYFSTGSCAEEEF 782
Query: 408 HHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQD---RPQLTSIADNLNY 464
HHYGLA YTHFTSPIRRY+D++VHRLL A++ K + ++ L + ++N
Sbjct: 783 HHYGLALDKYTHFTSPIRRYSDIIVHRLLMAAISKDKKMEIQENLFSNKDLEELCRHINN 842
Query: 465 RHRNAQMASRGSVELHTLIYFRKRPTDTEAR------IVKIRSNGFIVFVPKFGIEGPVY 518
R+R AQ + + S EL +YF+ + +TE R I IR+NG +VF+P+FGI+G Y
Sbjct: 843 RNRAAQHSQKQSTELFQCMYFKDKDPETEERCISDGVIYSIRTNGVLVFIPRFGIKGAAY 902
Query: 519 LTPR-------GQKGSGDW 530
L + G G +W
Sbjct: 903 LRNKDGLVVSCGPDGHSEW 921
>sp|Q5U2P0|DI3L1_RAT DIS3-like exonuclease 1 OS=Rattus norvegicus GN=Dis3l PE=2 SV=2
Length = 1054
Score = 401 bits (1030), Expect = e-111, Method: Compositional matrix adjust.
Identities = 238/602 (39%), Positives = 339/602 (56%), Gaps = 54/602 (8%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
L P D RIPKIRI T+Q L D R++V +DSW+ S YP GH+VRV+G IGD + E
Sbjct: 366 LVTPWDYRIPKIRISTQQAEALQDFRVVVRIDSWETTSVYPNGHFVRVLGRIGDLEGEIA 425
Query: 74 MVLIDNDIDARPFSTQVLACLP----PLPWSVSSEDLANPIRLDLRDLR-VFSVDPPGCK 128
+L++N I+ PFS + +P PW VS ++ R DLR VFS+DP GC+
Sbjct: 426 TILVENSINVVPFSEAQMCEMPVNTAENPWKVSPKEEQE--RRDLRSTHLVFSIDPKGCE 483
Query: 129 DIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPL 188
D+DDAL L++GN E+GVHIADVT+FV P + +D EA R T+ YL +RR DMLP L
Sbjct: 484 DVDDALSVRTLNNGNLELGVHIADVTHFVAPNSYIDVEARTRATTYYLADRRYDMLPSIL 543
Query: 189 TEDICSLRADVERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDS--- 244
+ D+CSL V+R A SV+WEL + EI Y +++I+S L Y AQ +D +
Sbjct: 544 SADLCSLLGGVDRYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQELLDGNFSI 603
Query: 245 ----------------RLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTE 288
++ L + + +A+ +R +R GAL L EV+ Q+D +
Sbjct: 604 VDDIPEFKTLEEQNRQAKLEELVWAIGKLTDIARHIRAKRDRCGALELEGVEVRVQLD-D 662
Query: 289 THDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLR 348
+ D+ Q E ++ V E M+ AN VA++I FP +LLR+HP P +E L
Sbjct: 663 KKNIHDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSELRE 722
Query: 349 TAAAVGLNLDVSSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEF 407
A A G +D S+K LADSLD A DP NKL+R +AT+ M+ A+YF +G EF
Sbjct: 723 CAKAKGFFIDTRSNKTLADSLDSANDPSDPLVNKLLRSMATQAMSNALYFSTGSCAEEEF 782
Query: 408 HHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQD---RPQLTSIADNLNY 464
HHYGLA YTHFTSPIRRY+D+VVHRLL A++ K + ++ L + ++N
Sbjct: 783 HHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDKKVEIKENLFSNKNLEELCRHINN 842
Query: 465 RHRNAQMASRGSVELHTLIYFRKRPTDTEARIV------KIRSNGFIVFVPKFGIEGPVY 518
R+R AQ + + S EL +YF+ R +TE R V IR+NG +VF+P+FGI+G Y
Sbjct: 843 RNRAAQRSQKQSTELFQCMYFKDRDPETEERCVVDGIIYSIRTNGVLVFIPRFGIKGAAY 902
Query: 519 LTPR-------GQKGSGDWY---VDEQQQKIVKMDG---NLSYSVLQTVNIHMEVVEPQP 565
L + G +GS +W + Q KI+ ++++ + V + + V QP
Sbjct: 903 LKNKDGLVISCGPEGSSEWKPGSLQRSQNKIISTTAGGQSVTFHLFDHVTVRISV---QP 959
Query: 566 NR 567
+R
Sbjct: 960 SR 961
>sp|Q8C0S1|DI3L1_MOUSE DIS3-like exonuclease 1 OS=Mus musculus GN=Dis3l PE=2 SV=2
Length = 1053
Score = 398 bits (1023), Expect = e-110, Method: Compositional matrix adjust.
Identities = 235/610 (38%), Positives = 340/610 (55%), Gaps = 51/610 (8%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
L P D RIPKIRI T+Q L D R++V +DSW+ S YP GH+VRV+G IGD + E
Sbjct: 366 LVTPWDYRIPKIRISTQQAEALQDFRVVVRIDSWEATSVYPNGHFVRVLGRIGDLEGEIA 425
Query: 74 MVLIDNDIDARPFSTQVLACLP----PLPWSVSSEDLANPIRLDLRDLR-VFSVDPPGCK 128
+L++N I PFS + +P PW VS ++ R DLR VFS+DP GC+
Sbjct: 426 TILVENSISVVPFSEAQMCEMPVNTPENPWKVSPKEEQE--RKDLRTTHLVFSIDPKGCE 483
Query: 129 DIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPL 188
D+DD L L++GN E+GVHIADVT+FV P + +D EA R T+ YL +RR DMLP L
Sbjct: 484 DVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDVEARTRATTYYLADRRYDMLPSIL 543
Query: 189 TEDICSLRADVERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDS--- 244
+ D+CSL V+R A SV+WEL + EI Y +++I+S L Y AQ +D +
Sbjct: 544 SADLCSLLGGVDRYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQELLDGNFSI 603
Query: 245 ----------------RLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTE 288
++ L + + +A+ +R +R GAL L EV+ Q+D +
Sbjct: 604 VDDIPELKALDKQSQQAKLEELVWAIGKLTDIARHIRAKRDRCGALELEGVEVRVQLD-D 662
Query: 289 THDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLR 348
+ D+ Q E ++ V E M+ AN VA++I FP +LLR+HP P +E L
Sbjct: 663 KKNIRDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSELRE 722
Query: 349 TAAAVGLNLDVSSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEF 407
A A G +D S+K LADSLD A DP NKL+R +AT+ M+ A+YF +G EF
Sbjct: 723 CAKAKGFFIDTRSNKTLADSLDSANDPKDPLVNKLLRSMATQAMSNALYFSTGSCAEEEF 782
Query: 408 HHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQD---RPQLTSIADNLNY 464
HHYGLA YTHFTSPIRRY+D+VVHRLL A++ K + ++ L + ++N
Sbjct: 783 HHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDKKMEIKENLFSNKNLEELCRHINN 842
Query: 465 RHRNAQMASRGSVELHTLIYFRKRPTDTEAR------IVKIRSNGFIVFVPKFGIEGPVY 518
R+R AQ + + S EL +YF+ R +TE R I IR+NG +VF+P+FGI+G Y
Sbjct: 843 RNRAAQRSQKQSTELFQCMYFKDRDAETEERCIADGVIYSIRTNGVLVFIPRFGIKGAAY 902
Query: 519 LTPR-------GQKGSGDWY---VDEQQQKIVKMDG---NLSYSVLQTVNIHMEVVEPQP 565
L + G +GS +W + Q KI+ ++++ + V + + V +
Sbjct: 903 LKNKDSLVISCGPEGSSEWKPGSLQRSQNKIISTTAGGQSVTFHLFDHVTVRISVQASRC 962
Query: 566 NRPKLQLTLI 575
+ ++L ++
Sbjct: 963 HSDTIRLEIV 972
>sp|A2RV18|DI3L1_DANRE DIS3-like exonuclease 1 OS=Danio rerio GN=dis3l PE=2 SV=1
Length = 1057
Score = 398 bits (1022), Expect = e-110, Method: Compositional matrix adjust.
Identities = 241/618 (38%), Positives = 353/618 (57%), Gaps = 48/618 (7%)
Query: 3 MPAGSGSVAHALFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVI 62
M + S + L VP D RIPKIRI T+Q L D+R+IV +DSW+ S YP GH+VRV+
Sbjct: 349 MQSQSRNSQKILVVPWDYRIPKIRISTQQAEALQDQRVIVRLDSWESTSVYPNGHFVRVL 408
Query: 63 GEIGDRDTESEMVLIDNDIDARPFSTQVLACLP----PLPWSVSSEDLANPIRLDLRDLR 118
G+ G+ +TE + +L++N I PFS L +P PW + S ++++ R DLRD
Sbjct: 409 GKSGELETEIQTILVENCIHVPPFSEAQLREMPVNTEENPWQMDSNEVSS--RRDLRDSH 466
Query: 119 -VFSVDPPGCKDIDDALHCTALSSGN-FEVGVHIADVTNFVHPGTPLDDEASKRGTSVYL 176
VFS+DP GC+D+DD L L G E+GVHIADVT+FV G+ D EA R T+ YL
Sbjct: 467 LVFSIDPKGCEDVDDTLSVRTLPGGKRLELGVHIADVTHFVREGSLTDLEARSRATTYYL 526
Query: 177 VERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYV 235
+RR DMLP L+ D+CSL V+R A SV+WEL E E+ S + +++I+S L Y
Sbjct: 527 ADRRYDMLPAVLSADLCSLLGGVDRYAMSVLWELDAETLEVCSVWFGRTLIRSSYQLHYE 586
Query: 236 EAQARMDDSRL----------------MDPLTTDLRNMNSLAKKMRQRRIERGALTLASA 279
AQ+ ++ + M L L + +A+ +R +R + GAL L
Sbjct: 587 LAQSLLNGEEVEVPELNPLKGSQRDQKMSELLQALETLTRVARHLRAQRDKGGALELEGV 646
Query: 280 EVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPT 339
EV+ Q+D E + + Q E ++ V E M+ AN VA +I FP +LLR HP P
Sbjct: 647 EVRAQLDEEKNITALVPK-QPLEVHETVAECMIYANHWVARKIQESFPHHALLRHHPPPK 705
Query: 340 KEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFC 398
+E L+ +A A G ++D S++ALADSL+RAV DP N+L+R++AT+ M+ A+YF
Sbjct: 706 QEFFNHLIDSAKAHGFSIDTRSNRALADSLERAVDPRDPLVNRLLRMMATQAMSNALYFS 765
Query: 399 SGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPS---VFQDRPQL 455
+G +++HYGLA YTHFTSPIRRYADV+VHRLL A++ + K S +L
Sbjct: 766 TGSCPEEQYYHYGLALARYTHFTSPIRRYADVIVHRLLMAAVQLEKDESPSKALACNKEL 825
Query: 456 TSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEAR------IVKIRSNGFIVFVP 509
+A ++N ++R AQ + + S+EL +YFR + + T+ R I +R+NGF+ FVP
Sbjct: 826 EELAQHINNKNRAAQHSQKQSIELFQCMYFRDKDSHTDERCVADAVIYAVRANGFLAFVP 885
Query: 510 KFGIEGPVYLTPR-GQ------KGSGDWYVDEQQQ---KIV--KMDGNLSYSVLQTVNIH 557
++G++G VYL R GQ G +W Q+ KI+ G ++ + V +
Sbjct: 886 QYGLKGAVYLKDREGQVISVDGDGKCEWKPGTLQKYSDKIITSTSTGTHTFYLFNHVTVR 945
Query: 558 MEVVEPQPNRPKLQLTLI 575
+ V + + L L LI
Sbjct: 946 ISVEPSRCHADSLNLELI 963
>sp|Q5R5N8|DI3L1_PONAB DIS3-like exonuclease 1 OS=Pongo abelii GN=DIS3L PE=2 SV=1
Length = 1054
Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust.
Identities = 225/545 (41%), Positives = 315/545 (57%), Gaps = 40/545 (7%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
L P D RIPKIRI T+Q L D R++V +DSW+ S YP GH+VRV+G IGD + E
Sbjct: 366 LVTPWDYRIPKIRISTQQAETLQDFRVVVRIDSWESTSVYPNGHFVRVLGRIGDLEGEIA 425
Query: 74 MVLIDNDIDARPFSTQVLACLP----PLPWSVSSEDLANPIRLDLRDLR-VFSVDPPGCK 128
+L++N I PFS + +P PW VS E+ R DLR VFS+DP GC+
Sbjct: 426 TILVENSISVIPFSEAQMCEMPVNTPENPWKVSPEEEQK--RKDLRKSHLVFSIDPKGCE 483
Query: 129 DIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPL 188
D+DD L L++GN E+GVHIADVT+FV P + +D EA R T+ YL +RR DMLP L
Sbjct: 484 DVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDIEARTRATTYYLADRRYDMLPSVL 543
Query: 189 TEDICSLRADVERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDS--- 244
+ D+CSL V+R A S++WEL + EI Y +++I+S L Y AQ +D +
Sbjct: 544 SADLCSLLGGVDRYAVSIMWELDKASYEIKKVWYGRTIIRSAYKLFYEAAQELLDGNLSV 603
Query: 245 ----------------RLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTE 288
++ L + + +A+ +R +R GAL L EV+ Q+D +
Sbjct: 604 VDDIPEFKDLDEKSRQAKLEELVWAIGKLTDIARHVRAKRDGCGALELEGVEVRVQLD-D 662
Query: 289 THDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLR 348
+ D+ Q E ++ V E M+ AN VA++I FP +LLR+HP P +E L
Sbjct: 663 KKNIHDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSELRE 722
Query: 349 TAAAVGLNLDVSSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEF 407
A A G +D S+K LADSLD A G DP N+L+R +AT+ M+ A+YF +G EF
Sbjct: 723 CAKAKGFFIDTRSNKTLADSLDNANGPHDPIVNRLLRSMATQAMSNALYFSTGSCAEEEF 782
Query: 408 HHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYK----LPSVFQDRPQLTSIADNLN 463
HHYGLA YTHFTSPIRRY+D+VVHRLL A++ K ++F ++ L + ++N
Sbjct: 783 HHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDKKMEIKGNLFSNK-DLEELCRHIN 841
Query: 464 YRHRNAQMASRGSVELHTLIYFRKRPTDTEAR------IVKIRSNGFIVFVPKFGIEGPV 517
R+R AQ + + S EL +YF+ + TE R I IR+NG +VF+P+FGI+G
Sbjct: 842 NRNRAAQHSQKQSTELFQCMYFKDKDPATEERCISDGVIYSIRANGVLVFIPRFGIKGAA 901
Query: 518 YLTPR 522
YL +
Sbjct: 902 YLKNK 906
>sp|Q0P4R5|DI3L1_XENTR DIS3-like exonuclease 1 OS=Xenopus tropicalis GN=dis3l PE=2 SV=2
Length = 1039
Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust.
Identities = 225/538 (41%), Positives = 314/538 (58%), Gaps = 39/538 (7%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
L +P D RIPKIRI T+Q L D R++V +DSW+ S YP GH+VRV+G G+ + E
Sbjct: 360 LVMPWDYRIPKIRISTQQAEALQDYRVVVRIDSWESTSLYPNGHFVRVLGRTGNLEAEIA 419
Query: 74 MVLIDNDIDARPFSTQVLACLPP----LPWSVSSEDLANPIRLDLRDLR-VFSVDPPGCK 128
+L++N I PFS LA +P PW V E+ RLDLR VFS+DP GC+
Sbjct: 420 TILVENSISVNPFSEAQLAEMPSNTPESPWQVKPEE---GDRLDLRKTHLVFSIDPKGCE 476
Query: 129 DIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPL 188
D+DDAL L SG+ E+GVHIADVT+FV P T D EA R T+ YL +RR DMLP L
Sbjct: 477 DVDDALSIRKLPSGHLELGVHIADVTHFVPPNTYTDIEARSRATTYYLADRRYDMLPLIL 536
Query: 189 TEDICSLRADVERLAFSVIWEL-TPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLM 247
+ D+CSL V+R A SVIWE+ + EI Y +++I+S LSY AQ MD +
Sbjct: 537 SADLCSLLGGVDRYAVSVIWEMDSSTYEIRRVWYGRTIIRSSYKLSYEVAQQLMDGD--L 594
Query: 248 DPLTTDLR-------------------NMNSLAKKMRQRRIERGALTLASAEVKFQIDTE 288
+PL T++ + +A R RR GAL L EV+ Q+ E
Sbjct: 595 EPLNTEMELHPLKQDPVRLEQLLWAVGKLTEVAHATRMRRDMSGALELEGVEVRVQLG-E 653
Query: 289 THDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLR 348
H D+ Q + ++ + E M+ AN VA++I +P +LLR HP +E + L
Sbjct: 654 KHSIDDLVPKQPLQMHETIAECMILANHWVAKKIWECYPQHALLRLHPPARQEFFQELKE 713
Query: 349 TAAAVGLNLDVSSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEF 407
A A G ++D S+KALADSLD+A DP N+L+R++AT+ M+ A YF +G T EF
Sbjct: 714 CAKARGFSIDTRSNKALADSLDQANDPSDPLVNQLLRMMATQAMSNARYFSTGSYTEDEF 773
Query: 408 HHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHR 467
+HYGLA YTHFTSPIRRYAD+VVHRLL A++ ++ ++ L + ++N R+R
Sbjct: 774 YHYGLALEKYTHFTSPIRRYADIVVHRLLLAAVNKGPKDNLLGNK-DLEELCRHINVRNR 832
Query: 468 NAQMASRGSVELHTLIYFRKRPTDTEAR------IVKIRSNGFIVFVPKFGIEGPVYL 519
AQ + S EL ++F+ + D++ R I IR+NG ++F+P++GI+G YL
Sbjct: 833 AAQHCQKQSTELFQCMFFKDKDPDSDQRCISDAVIYGIRTNGVLLFLPRYGIKGAAYL 890
>sp|Q6GN11|DI3L1_XENLA DIS3-like exonuclease 1 OS=Xenopus laevis GN=dis3l PE=2 SV=2
Length = 1040
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 223/538 (41%), Positives = 313/538 (58%), Gaps = 39/538 (7%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
L +P D RIPKIRI T+Q L + R++V +DSW+ S YP GH+VR +G G+ + E
Sbjct: 361 LVMPWDYRIPKIRISTQQAEALQNYRVVVRIDSWESNSLYPNGHFVRALGRAGNLEAEIA 420
Query: 74 MVLIDNDIDARPFSTQVLACLPPL----PWSVSSEDLANPIRLDLRDLR-VFSVDPPGCK 128
+L++N I PFS LA +P PW V E+ RLDLR+ VFS+DP GC+
Sbjct: 421 TILVENSISLNPFSEAQLAEMPSNTHENPWQVKPEE---GDRLDLRETHLVFSIDPKGCE 477
Query: 129 DIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPL 188
D+DDAL L SG+ E+GVHIADVT+FV T D EA R T+ YL +RR DMLP L
Sbjct: 478 DVDDALSIRVLPSGDLELGVHIADVTHFVQHNTYTDIEARSRATTYYLADRRNDMLPLIL 537
Query: 189 TEDICSLRADVERLAFSVIWEL-TPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLM 247
+ D+CSL V+R A SVIWE+ EI Y +++I+S LSY AQ +D +
Sbjct: 538 SADLCSLLGAVDRYAVSVIWEMDCSTYEIRRVWYGRTIIRSSYKLSYEVAQQLLDGD--L 595
Query: 248 DPLTTD-------------------LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTE 288
+PL+T+ + M +A R RR GAL L EV+ Q+ E
Sbjct: 596 EPLSTEKELHPLKQDPARLQQLLWAVGKMTEVAHATRMRRNMSGALELEGVEVRVQLG-E 654
Query: 289 THDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLR 348
H D+ Q + ++ + E M+ AN VA++I +P +LLR HP P +E + L
Sbjct: 655 KHSIDDLVPKQPLQVHETIAECMILANHWVAKKIWESYPQHALLRLHPPPRQEFFQELKE 714
Query: 349 TAAAVGLNLDVSSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEF 407
A A G ++D S+KALADSLD+A DP N+L+R++AT+ M+ A YF +G T EF
Sbjct: 715 CAKARGFSIDTRSNKALADSLDQAHDPSDPLVNQLLRMMATQAMSNARYFSTGSYTEDEF 774
Query: 408 HHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHR 467
+HYGLA YTHFTSPIRRYAD+VVHRLL A++ + ++ L + ++N R+R
Sbjct: 775 YHYGLALEKYTHFTSPIRRYADIVVHRLLLAAVNKGPKDHLLGNK-DLEELCRHINARNR 833
Query: 468 NAQMASRGSVELHTLIYFRKRPTDTEAR------IVKIRSNGFIVFVPKFGIEGPVYL 519
AQ + S EL ++F+ + D++ R I IR+NG ++F+P++GI+G YL
Sbjct: 834 AAQQCQKQSTELFQCMFFKDKDPDSDQRCISDAVIYGIRTNGVLLFIPRYGIKGAAYL 891
>sp|Q8TF46|DI3L1_HUMAN DIS3-like exonuclease 1 OS=Homo sapiens GN=DIS3L PE=1 SV=2
Length = 1054
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 222/545 (40%), Positives = 313/545 (57%), Gaps = 40/545 (7%)
Query: 14 LFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
L P D RIPKIRI T+Q L D R++V +DSW+ S YP GH+VRV+G IGD + E
Sbjct: 366 LVTPWDYRIPKIRISTQQAETLQDFRVVVRIDSWESTSVYPNGHFVRVLGRIGDLEGEIA 425
Query: 74 MVLIDNDIDARPFSTQVLACLP----PLPWSVSSEDLANPIRLDLRDLR-VFSVDPPGCK 128
+L++N I PFS + +P PW VS E+ R DLR VFS+DP GC+
Sbjct: 426 TILVENSISVIPFSEAQMCEMPVNTPESPWKVSPEEEQK--RKDLRKSHLVFSIDPKGCE 483
Query: 129 DIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPL 188
D+DD L L++GN E+GVHIADVT+FV P + +D EA R T+ YL +RR DMLP L
Sbjct: 484 DVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDIEARTRATTYYLADRRYDMLPSVL 543
Query: 189 TEDICSLRADVERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDS--- 244
+ D+CSL V+R A S++WEL + EI Y +++I+S L Y AQ +D +
Sbjct: 544 SADLCSLLGGVDRYAVSIMWELDKASYEIKKVWYGRTIIRSAYKLFYEAAQELLDGNLSV 603
Query: 245 ----------------RLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTE 288
++ L + + +A+ +R +R GAL L EV Q+D +
Sbjct: 604 VDDIPEFKDLDEKSRQAKLEELVWAIGKLTDIARHVRAKRDGCGALELEGVEVCVQLD-D 662
Query: 289 THDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLR 348
+ D+ Q E ++ V E M+ AN VA++I FP +LLR+HP P +E L
Sbjct: 663 KKNIHDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSELRE 722
Query: 349 TAAAVGLNLDVSSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEF 407
A A G +D S+K LADSLD A DP N+L+R +AT+ M+ A+YF +G EF
Sbjct: 723 CAKAKGFFIDTRSNKTLADSLDNANDPHDPIVNRLLRSMATQAMSNALYFSTGSCAEEEF 782
Query: 408 HHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYK----LPSVFQDRPQLTSIADNLN 463
HHYGLA YTHFTSPIRRY+D+VVHRLL A++ K ++F ++ L + ++N
Sbjct: 783 HHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDKKMEIKGNLFSNK-DLEELCRHIN 841
Query: 464 YRHRNAQMASRGSVELHTLIYFRKRPTDTEAR------IVKIRSNGFIVFVPKFGIEGPV 517
R++ AQ + + S EL +YF+ + TE R I IR+NG ++F+P+FGI+G
Sbjct: 842 NRNQAAQHSQKQSTELFQCMYFKDKDPATEERCISDGVIYSIRTNGVLLFIPRFGIKGAA 901
Query: 518 YLTPR 522
YL +
Sbjct: 902 YLKNK 906
>sp|Q8CI75|DI3L2_MOUSE DIS3-like exonuclease 2 OS=Mus musculus GN=Dis3l2 PE=1 SV=1
Length = 870
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 209/540 (38%), Positives = 321/540 (59%), Gaps = 41/540 (7%)
Query: 12 HALFVPKDRRIPKIRIQTRQL--------GNLLDKRIIVAVDSWDCQSRYPFGHYVRVIG 63
+ALF P D R+P+I + + + + I + W + G + +G
Sbjct: 263 YALFSPSDHRVPRIYVPLKDCPQDFMTRPKDFANTLFICRIIDWKEDCNFALGQLAKSLG 322
Query: 64 EIGDRDTESEMVLIDNDIDARPFSTQVLACLP-PLPWSVSSEDLANPIRLDLRDLRVFSV 122
+ G+ + E+E +L + +D FS++VL CLP LPW++ +++ R DLR +F++
Sbjct: 323 QAGEIEPETEGILTEYGVDFSDFSSEVLECLPQSLPWTIPPDEVGK--RRDLRKDCIFTI 380
Query: 123 DPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRID 182
DP +D+DDAL C L+ G FEVGVHIADV+ FV G+ LD A++R TSVYLV++ +
Sbjct: 381 DPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQKVVP 440
Query: 183 MLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMD 242
MLP+ L E++CSL ++L FSVIW+LTPE +I+ + +++I+SC LSY AQ+ ++
Sbjct: 441 MLPRLLCEELCSLNPMTDKLTFSVIWKLTPEGKILEEWFGRTIIRSCTKLSYDHAQSMIE 500
Query: 243 D------SRLMDPLTTD---------LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDT 287
+ + P++ + + N++S+AK++R++R GAL L ++ F +D
Sbjct: 501 NPTEKIPEEELPPISPEHSVEEVHQAVLNLHSIAKQLRRQRFVDGALRLDQLKLAFTLDH 560
Query: 288 ETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLL 347
ET P +Y+ R++N++VEEFML AN++VA +I R FP +LLRRHP P +ML L+
Sbjct: 561 ETGLPQGCHIYEYRDSNKLVEEFMLLANMAVAHKIFRTFPEQALLRRHPPPQTKMLSDLV 620
Query: 348 RTAAAVGLNLDVSSSKALADSLDRAVGDDPYF---NKLIRILATRCMTQAVYFCSGDLTP 404
+GL +DVSS+ AL SL + GDD Y +++ + +R M A+YFCSG L
Sbjct: 621 EFCDQMGLPMDVSSAGALNKSLTKTFGDDKYSLARKEVLTNMYSRPMQMALYFCSGMLQD 680
Query: 405 PE-FHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLN 463
E F HY L PLYTHFTSPIRR+ADV+VHRLL+A+LG + P V D L AD+ N
Sbjct: 681 QEQFRHYALNVPLYTHFTSPIRRFADVIVHRLLAAALGYSEQPDVEPD--TLQKQADHCN 738
Query: 464 YRHRNAQMASRGSVELHTLIYF-----RKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVY 518
R +MAS+ EL ++F P ++EA ++ + + F V V +FG++ +Y
Sbjct: 739 DR----RMASKRVQELSIGLFFAVLVKESGPLESEAMVMGVLNQAFDVLVLRFGVQKRIY 794
>sp|Q8IYB7|DI3L2_HUMAN DIS3-like exonuclease 2 OS=Homo sapiens GN=DIS3L2 PE=1 SV=4
Length = 885
Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust.
Identities = 210/540 (38%), Positives = 316/540 (58%), Gaps = 41/540 (7%)
Query: 12 HALFVPKDRRIPKIRIQTRQL--------GNLLDKRIIVAVDSWDCQSRYPFGHYVRVIG 63
+ALF P D R+P+I + + + + I + W + G + +G
Sbjct: 265 YALFSPSDHRVPRIYVPLKDCPQDFVARPKDYANTLFICRIVDWKEDCNFALGQLAKSLG 324
Query: 64 EIGDRDTESEMVLIDNDIDARPFSTQVLACLPP-LPWSVSSEDLANPIRLDLRDLRVFSV 122
+ G+ + E+E +L + +D FS++VL CLP LPW++ E+ + R DLR +F++
Sbjct: 325 QAGEIEPETEGILTEYGVDFSDFSSEVLECLPQGLPWTIPPEEFSK--RRDLRKDCIFTI 382
Query: 123 DPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRID 182
DP +D+DDAL C L+ GNF+VGVHIADV+ FV G+ LD A++R TSVYLV++ +
Sbjct: 383 DPSTARDLDDALSCKPLADGNFKVGVHIADVSYFVPEGSDLDKVAAERATSVYLVQKVVP 442
Query: 183 MLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMD 242
MLP+ L E++CSL ++L FSVIW LTPE +I+ + +++I+SC LSY AQ+ ++
Sbjct: 443 MLPRLLCEELCSLNPMSDKLTFSVIWTLTPEGKILDEWFGRTIIRSCTKLSYEHAQSMIE 502
Query: 243 D------SRLMDPLTTD---------LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDT 287
++ + P++ + + N++ +AK++RQ+R GAL L ++ F +D
Sbjct: 503 SPTEKIPAKELPPISPEHSSEEVHQAVLNLHGIAKQLRQQRFVDGALRLDQLKLAFTLDH 562
Query: 288 ETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLL 347
ET P +Y+ RE+N++VEEFML AN++VA +I R FP +LLRRHP P ML L+
Sbjct: 563 ETGLPQGCHIYEYRESNKLVEEFMLLANMAVAHKIHRAFPEQALLRRHPPPQTRMLSDLV 622
Query: 348 RTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLIRILATRC---MTQAVYFCSGDLT- 403
+GL +D SS+ AL SL + GDD Y +L C M A+YFCSG L
Sbjct: 623 EFCDQMGLPVDFSSAGALNKSLTQTFGDDKYSLARKEVLTNMCSRPMQMALYFCSGLLQD 682
Query: 404 PPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLN 463
P +F HY L PLYTHFTSPIRR+ADV+VHRLL+A+LG + + D L AD+ N
Sbjct: 683 PAQFRHYALNVPLYTHFTSPIRRFADVLVHRLLAAALGYRERLDMAPD--TLQKQADHCN 740
Query: 464 YRHRNAQMASRGSVELHTLIYF-----RKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVY 518
R +MAS+ EL T ++F P ++EA ++ I F V V ++G++ +Y
Sbjct: 741 DR----RMASKRVQELSTSLFFAVLVKESGPLESEAMVMGILKQAFDVLVLRYGVQKRIY 796
>sp|Q0V9R3|DI3L2_XENTR DIS3-like exonuclease 2 OS=Xenopus tropicalis GN=dis3l2 PE=2 SV=1
Length = 834
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 209/538 (38%), Positives = 310/538 (57%), Gaps = 39/538 (7%)
Query: 13 ALFVPKDRRIPKI-----------RIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRV 61
ALF P D R+P+I I N L I ++ +W S + G ++
Sbjct: 237 ALFSPVDHRLPRIYVPLGDCPHDFAIHPETYANTL---FICSITAWRDDSNFAEGKLMKS 293
Query: 62 IGEIGDRDTESEMVLIDNDIDARPFSTQVLACLPP-LPWSVSSEDLANPIRLDLRDLRVF 120
+G+ G+ + E+E +L++ +D F +VL CLP LPW++ E+ R DLR+ +F
Sbjct: 294 LGQAGEIEPETEGILVEYGVDFSDFPDKVLQCLPQDLPWTIPQEEFQK--RKDLRNECIF 351
Query: 121 SVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERR 180
++DP +D+DDAL C L GNFEVGVHIADV+ FV G+ LD AS+R TSVYLV++
Sbjct: 352 TIDPATARDLDDALSCKPLPDGNFEVGVHIADVSYFVAEGSALDIMASERATSVYLVQKV 411
Query: 181 IDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQAR 240
I MLP+ L E++CSL +RL FSVIW++TP+ EI+ + +SVI SC LSY AQ
Sbjct: 412 IPMLPRLLCEELCSLNPMTDRLTFSVIWKITPQGEILDEWFGRSVICSCVKLSYDHAQNM 471
Query: 241 MD--DSRL-------------MDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQI 285
++ D ++ ++ + + N++ +A+ +R++R + GAL L ++ F +
Sbjct: 472 INHPDKKIEQHELPPVSPQHTINEIHQAVLNLHLIAQNLRKQRFDDGALRLDQLKLTFTL 531
Query: 286 DTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEP 345
D E+ P +YQ R++N++VEEFML AN++VA I R+FP +LLRRHP P +ML
Sbjct: 532 DKESGLPQGCYIYQYRDSNKLVEEFMLLANMAVAHHIYRRFPEEALLRRHPPPQTKMLND 591
Query: 346 LLRTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLIRILATRC---MTQAVYFCSGDL 402
L+ +GL LD +SS L SL+ D Y +L C M AVYFC+G L
Sbjct: 592 LIEFCDQMGLQLDFTSSGTLHKSLNDQFETDEYSAARKEVLTNMCSRPMQMAVYFCTGAL 651
Query: 403 TPPE-FHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADN 461
FHHY L PLYTHFTSPIRR+ADV+VHRLL+ASLG P + + + AD+
Sbjct: 652 KDETLFHHYALNVPLYTHFTSPIRRFADVIVHRLLAASLGCG--PPLKMPKEVIQKQADH 709
Query: 462 LNYRHRNAQMASRGSVELHTLIYFRK-RPTDTEARIVKIRSNGFIVFVPKFGIEGPVY 518
N R ++ S EL ++ ++ P ++EA ++ + + F V V +FG++ +Y
Sbjct: 710 CNDRKTASKRVQELSAELFFSVFVKECGPLESEAMVMGVLNEAFDVIVLRFGVQKRIY 767
>sp|O14040|DIS3L_SCHPO Dis3-like exonuclease C2C4.07c OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC2C4.07c PE=3 SV=1
Length = 927
Score = 337 bits (865), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 204/552 (36%), Positives = 301/552 (54%), Gaps = 47/552 (8%)
Query: 7 SGSVAHALFVPKDRRIPKIRIQTRQLGNLL------------DKRIIVAVDSWDCQSRYP 54
S ++A+F+PKD+R+P I I L +L D+ V + W SRYP
Sbjct: 327 SKKSSYAIFIPKDKRLPFITIHKNDLSDLSGENWIENILKHHDQLFSVEITRWSIYSRYP 386
Query: 55 FGHYVRVIGEIGDRDTESEMVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDL 114
G +G I D + + +L++N I + PFS +VL CLPP W +S E++ R DL
Sbjct: 387 MGVLGEKLGNITDVEAYTNALLLENGISSSPFSDEVLNCLPPDDWIISHEEIKK--RRDL 444
Query: 115 RDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSV 174
R+ + ++DP +D+DDA+ C AL +G +EVGVHIADVT+FV P + LD EA+ R T+V
Sbjct: 445 RNELIITIDPETARDLDDAVSCRALDNGTYEVGVHIADVTHFVKPDSALDKEAASRATTV 504
Query: 175 YLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTR-YTKSVIKSCAALS 233
YLV++ I MLP L E +CSL +VERLAFSV W+L + I R + K+VIK+CA L+
Sbjct: 505 YLVQKAIPMLPPLLCERLCSLNPNVERLAFSVFWKLDSNGKEIGKRWFGKTVIKTCARLA 564
Query: 234 YVEAQARMDDSRLMDP-------------LTTDLRNMNSLAKKMRQRRIERGALTLASAE 280
Y EAQ ++ D + T + + +++K+R+ R +GA+ + S E
Sbjct: 565 YSEAQGVIEGKSWDDAVGKPIGGTHTPKDVETSILTLCEISRKLRKDRFAKGAVEINSTE 624
Query: 281 VKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTK 340
+KFQ+D E P +Y+ +AN ++EEFML AN SVAE I + F SLLRRH SP +
Sbjct: 625 LKFQLD-EYGMPNKCEVYEQTDANHLIEEFMLLANRSVAEHISKNFSNNSLLRRHASPKE 683
Query: 341 EMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDDPYFN----KLIRILATRCMTQAVY 396
+ + ++ + D SSS A S+ R FN +L +A R + +A Y
Sbjct: 684 KQINEFCHFLKSMNFDFDASSSAAFNASMVRLRS---TFNEELVELFENMAVRSLNRAEY 740
Query: 397 FCSGDL-TPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQL 455
FC+GD ++HHY L+ YTHFTSPIRRY D++VHRLL SL K S D+
Sbjct: 741 FCTGDFGEKTDWHHYALSFNHYTHFTSPIRRYPDIIVHRLLERSL---KNTSPGIDKKNC 797
Query: 456 TSIADNLNYRHRNAQMASRGSVELHTLIYFR-------KRPTDTEARIVKIRSNGFIVFV 508
+ +A + N + + S +L +Y K+ +A +I N V++
Sbjct: 798 SLVAAHCNEKKEKSTTVQEDSQQLFLSVYIAEYCKKHDKKSMPVQAFATRISGNSIDVYI 857
Query: 509 PKFGIEGPVYLT 520
++GI V L+
Sbjct: 858 SEYGISNRVDLS 869
>sp|Q09568|YR86_CAEEL Uncharacterized ribonuclease F48E8.6 OS=Caenorhabditis elegans
GN=F48E8.6 PE=3 SV=2
Length = 848
Score = 289 bits (740), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 183/550 (33%), Positives = 292/550 (53%), Gaps = 53/550 (9%)
Query: 12 HALFVPKDRRIPKIRIQTRQLGNLLDKR--------IIVAVDSWDCQSRYPFGHYVRVIG 63
+ LFV D R+P+I I + R + W +S Y G V+++G
Sbjct: 225 NVLFVATDSRVPRILIPKSDVDKEFFSRPKDFERFLYTAKITDWRAESVYADGRLVKLLG 284
Query: 64 EIGDRDTESEMVLIDNDIDARPFSTQVLACLPPLP---WSVSSEDLANPIRLDLRDLRVF 120
G+ DTE+E ++ ++ ID R FS + L LP W V + R D R VF
Sbjct: 285 MSGEIDTETERIVYEHQIDHREFSDECLESLPITTAENWKVPDAEFE--YRRDFRSDIVF 342
Query: 121 SVDPPGCKDIDDALH------CTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSV 174
++DP +D+DDALH C + E+GVHIADVT F+ GT LD AS+RG S
Sbjct: 343 TIDPKTARDLDDALHAKHIDDCDGKGTPGLEIGVHIADVTFFLKEGTELDKWASERGNST 402
Query: 175 YLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSY 234
YL + I MLP+ L E +CSL V+RL+FS +++++ EAE+ + +SVI+S L+Y
Sbjct: 403 YLSQTVIPMLPRILCEQLCSLNPGVDRLSFSTVFKMSYEAELYDVWFGRSVIRSRVKLAY 462
Query: 235 VEAQARMDDSR---LMDPLTTDLRNMNS-------------LAKKMRQRRIERGALTLAS 278
AQ +++ D L D+ + N+ +A+ +RQ+R + GAL +
Sbjct: 463 EHAQDFIENPEKDFTCDEL-PDISDGNTPFEIKEKTLMLHRIAQVLRQKREDSGALRIEL 521
Query: 279 AEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSP 338
+KF +D E P + +Y+I+++N++VEEFML AN+ VA++I FP +LLR HP P
Sbjct: 522 PRLKFALD-EDKKPQGVSIYEIKDSNKLVEEFMLLANMEVAKKIAENFPEHALLRNHPPP 580
Query: 339 TKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGD---DPYFNKLIRILATRCMTQAV 395
++M++ + A +G LD +S L+ SL + G D ++I L + M QA
Sbjct: 581 KEKMIKDVAEQCARIGFPLDGRTSGLLSTSLRKYQGKSRLDMCIRQVISSLTIKPMQQAK 640
Query: 396 YFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQ- 454
YFC+ ++ +HH+ L YTHFTSPIRRY DV+VHR L+A+LG + +R +
Sbjct: 641 YFCTFEMPLSFYHHFALNVDHYTHFTSPIRRYPDVIVHRQLAAALG-------YNERSER 693
Query: 455 LTSIADNLNYRHRNAQMASRGSVELHTLIYF-----RKRPTDTEARIVKIRSNGFIVFVP 509
+ + R + ++AS+ + + ++YF + P +A ++ + F V +
Sbjct: 694 VPEEIQEICTRCNDTKLASKEASDESAMLYFGVFIHQTGPMKCQAVVLGVMDLSFDVLIV 753
Query: 510 KFGIEGPVYL 519
++G+ VY+
Sbjct: 754 EYGVVKRVYV 763
>sp|O32231|RNR_BACSU Ribonuclease R OS=Bacillus subtilis (strain 168) GN=rnr PE=3 SV=1
Length = 779
Score = 208 bits (529), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 152/464 (32%), Positives = 236/464 (50%), Gaps = 30/464 (6%)
Query: 86 FSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFE 145
F + P ++ +DL + R DLRD + ++D KD+DDA+ T L G+++
Sbjct: 225 FPADAMEQASSTPDTIDEKDLKD--RRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYK 282
Query: 146 VGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFS 205
+GVHIADV+++V +P+D EA +RGTSVYLV+R I M+P L+ ICSL V+RL S
Sbjct: 283 LGVHIADVSHYVTENSPIDKEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLS 342
Query: 206 VIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARM--DDSRL---MDPLTTDLRNMNSL 260
+ + ++ +SVIK+ ++Y + + DD L +PL ++M L
Sbjct: 343 CEMTINSQGQVTEHEIFQSVIKTTERMTYSDVNKILVDDDEELKQKYEPLVPMFKDMERL 402
Query: 261 AKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAE 320
A+ +R +R++RGA+ E K +D E D+ + + A +++EEFML AN +VAE
Sbjct: 403 AQILRDKRMDRGAVDFDFKEAKVLVDDEGA-VKDVVIRERSVAEKLIEEFMLVANETVAE 461
Query: 321 QILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSS----KALADSLDRAVGDD 376
+ + R H P E L+ L G + ++ +AL LD AV D
Sbjct: 462 H-FHWMNVPFIYRIHEEPNAEKLQKFLEFVTTFGYVVKGTAGNIHPRALQSILD-AVRDR 519
Query: 377 PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLL 436
P +I + R M QA Y P H+GL+ YTHFTSPIRRY D++VHRL+
Sbjct: 520 PE-ETVISTVMLRSMKQAKY------DPQSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLI 572
Query: 437 SASLGIYKLPSVFQDR--PQLTSIADNLNYRHRNAQMASRGSVELHTLIY-FRKRPTDTE 493
L K+ Q++ +L IA++ + R A A R + +L Y K + +
Sbjct: 573 RTYLINGKVDEATQEKWAERLPDIAEHTSSMERRAVDAERETDDLKKAEYMLDKIGEEFD 632
Query: 494 ARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWY-VDEQQ 536
I + + G V +P IEG V+++ + D+Y DEQ
Sbjct: 633 GMISSVTNFGMFVELPN-TIEGLVHVSFM----TDDYYRFDEQH 671
>sp|Q9WZI1|RNR_THEMA Ribonuclease R OS=Thermotoga maritima (strain ATCC 43589 / MSB8 /
DSM 3109 / JCM 10099) GN=rnr PE=3 SV=1
Length = 710
Score = 205 bits (521), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 160/495 (32%), Positives = 247/495 (49%), Gaps = 22/495 (4%)
Query: 37 DKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESEMVLIDNDI-DARPFSTQVLACLP 95
++++I + + + P V+V+G++ D + V++ +D+ + F +V+
Sbjct: 173 NQKVIAEILKYPSPGKNPEAKVVKVLGDLDDPSIDLPSVIVKHDLPEPGEFPEEVIREAN 232
Query: 96 PLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTN 155
+P V +DL R DLRD + ++D KD DDA+ L +GN+ +GVHIADV++
Sbjct: 233 AIPARVRKKDLVG--RKDLRDKVIVTIDGEDAKDFDDAISVEKLPNGNYLLGVHIADVSH 290
Query: 156 FVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAE 215
+V G+ LD EA KRGTSVYL++ I MLP L+ ICSL +RL SV E+ +
Sbjct: 291 YVKEGSALDQEAFKRGTSVYLIDTVIPMLPFRLSNGICSLVEGKDRLTMSVEMEIDRDGR 350
Query: 216 IISTRYTKSVIKSCAALSYVEAQARMDDSRLM---DPLTTDLRNMNSLAKKMRQRRIERG 272
++ SVIKS + Y ++D M +P + N LA+ +R+ R +RG
Sbjct: 351 VVRYDVYPSVIKSKKRMIYERVNEFLEDPSSMKEYEPFKDLIYNAVELAEILREARRKRG 410
Query: 273 A-LTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSL 331
A L + S EVK +D E +DI + A +++EEFM+ AN +VAE I L +
Sbjct: 411 AILDIESDEVKVILD-ENGQVVDIVPRKRGIAEKLIEEFMIRANETVAE-IFDHAGLPFM 468
Query: 332 LRRHPSPTKEMLEPLLRTAAAVGLNLDVSSS--KALADSLDRAVGDDPYFNKLIRILATR 389
R H P E + L A+G+ S + L V D P + + R+L R
Sbjct: 469 YRVHEEPDPETIFQLKNYLEAMGIRAKFSHKIHPGMLQKLLEKVKDHPLRSSVERLL-VR 527
Query: 390 CMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASL---GIYKLP 446
M +A+Y + H+GLA+ YTHFTSPIRRY D+VVHRLL L G +
Sbjct: 528 SMKRAMY------SAVNIGHFGLASYAYTHFTSPIRRYPDLVVHRLLKLYLEQNGYFTPE 581
Query: 447 SVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEARIV-KIRSNGFI 505
+ + L IA + + R R A A V + + Y + + +V I G
Sbjct: 582 QIEKFSKVLPKIAKHCSRRERVADEAEWDLVAMKKVEYIARHIGEVFNVVVTNITKFGLF 641
Query: 506 VFVPKFGIEGPVYLT 520
V +P+ I G V+++
Sbjct: 642 VEIPEKSISGLVHIS 656
>sp|Q9CH00|RNR1_LACLA Ribonuclease R 1 OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=rnr1 PE=3 SV=1
Length = 817
Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 161/522 (30%), Positives = 260/522 (49%), Gaps = 49/522 (9%)
Query: 56 GHYVRVIGEIGDRDTESEMVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLR 115
G +IG+ D+ + VL DI F +VL +P V ++ R+D R
Sbjct: 207 GLVTEIIGQADDQGIDVLEVLASMDI-VSEFPKEVLDQAEAVPEEVPENEIVG--RVDYR 263
Query: 116 DLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVY 175
+ F++D KD+DDA+H L +GN+E+GVHIADV+++V +PLD EA +RGTSVY
Sbjct: 264 NEITFTIDGADAKDLDDAVHAKRLENGNYELGVHIADVSHYVTENSPLDKEAYERGTSVY 323
Query: 176 LVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSY- 234
+ +R + MLP+ L+ ICSL + RL S + E++PE +I+ + ++S+IK+ ++Y
Sbjct: 324 VTDRVVPMLPERLSNGICSLNPRINRLTQSCVMEISPEGRVINYQISQSIIKTTERMTYD 383
Query: 235 -VEAQARMDDSRLMD--PLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHD 291
V D++ L + + ++ M L + R RGA+ + E K I E
Sbjct: 384 AVNQMIAGDEAALENYAKIADSVKIMVELHHILEAMRKRRGAIDFDTVEAKI-IVNEKGL 442
Query: 292 PLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAA 351
P++I A +M+E FML AN +VA L + R H P + L+ + AA
Sbjct: 443 PIEIRKRTRGIAERMIESFMLEANETVATH-FEAHGLPFIYRIHEQPKADRLQRFIDFAA 501
Query: 352 AVGLNLDVSSS----KALADSLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEF 407
G+ ++ +S+ K L + + G ++ + R M QA Y + +
Sbjct: 502 TFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEM--VLSTMLLRSMQQARYSENNE------ 553
Query: 408 HHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPS-VFQD-RPQLTSIADNLNYR 465
H+GLAA YTHFTSPIRRY D++VHRL+ +G K P+ + Q ++ IA++ ++R
Sbjct: 554 GHFGLAAENYTHFTSPIRRYPDLLVHRLIR-EIGEGKTPANILQKWEDKIPEIAEHSSHR 612
Query: 466 HRNAQMASRGSVELHTLIYFRKRPTDTEARIVKIRSNGFIVFVPKFG--------IEGPV 517
R A A R VE F + E G I V +FG IEG V
Sbjct: 613 ERRAVDAER-EVEKMKKAEFMEEHVGEEYE-------GIIASVTRFGMFIELENTIEGLV 664
Query: 518 YLTPRGQKGSGDWYVDEQQQKIVKMDG---NLSYSVLQTVNI 556
+++ GD++ Q++++ + G L++ + Q + I
Sbjct: 665 HISTL----KGDYF--NYQERMLALIGERSGLTFKIGQPIKI 700
>sp|Q02146|RNR2_LACLA Ribonuclease R 2 OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=rnr2 PE=3 SV=3
Length = 665
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 121/361 (33%), Positives = 192/361 (53%), Gaps = 20/361 (5%)
Query: 84 RPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGN 143
+ FS++ LA ++ DL + R D R+ +++D KD+DDA+H LS+ +
Sbjct: 177 QEFSSETLAEAEAFSEKLTDSDLQD--REDYRNEITYTIDGDDSKDLDDAIHVKKLSNWH 234
Query: 144 FEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLA 203
FE+GVHIADV+++V G+ LD+EA R TSVY+ +R + MLP L+ ++CSL ERL
Sbjct: 235 FELGVHIADVSHYVTEGSSLDEEAYSRATSVYVTDRVVPMLPVKLSNNLCSLNEAQERLT 294
Query: 204 FSVIWELTPEAEIISTRYTKSVIKSCAALSYVEA-----QARMDDSRLMD---PLTTDLR 255
S + E+ + +I+S + + SVIK+ ++Y Q + ++ +T ++
Sbjct: 295 MSCLMEIDDKGKIVSYKISPSVIKTTYRMTYNNVNKMIHQGQEGHREALENFFKITDSIK 354
Query: 256 NMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAAN 315
L + + R +RG + +E K +D + H P++I A +M+E FML AN
Sbjct: 355 VAVELHEILETMRKDRGMIEFDESEAKIILDEKGH-PIEIVKRDRDTAERMIESFMLMAN 413
Query: 316 VSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGD 375
+VA ++ L SL R H +P ++ L+ AA G +L+ S +A+ D G
Sbjct: 414 ETVALDFQKK-KLPSLYRVHDNPKEKSFAKLMEAAANAGFSLNSDSHQAINFFADEIKGT 472
Query: 376 DPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRL 435
K + M+ AVY + H+GLAA YTHFTSPIRRY D+++HRL
Sbjct: 473 SS--EKALTYQLRHTMSTAVY------SEKNTKHFGLAATNYTHFTSPIRRYPDLIIHRL 524
Query: 436 L 436
L
Sbjct: 525 L 525
>sp|Q9PR88|RNR_UREPA Ribonuclease R OS=Ureaplasma parvum serovar 3 (strain ATCC 700970)
GN=rnr PE=3 SV=1
Length = 721
Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 128/395 (32%), Positives = 200/395 (50%), Gaps = 29/395 (7%)
Query: 59 VRVIGEIGDRDTESEMVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLR 118
V +IG D ++ ++ DN ID F QV+ L + V N IR + D
Sbjct: 200 VHIIGHKNDVGSDVLSIVYDNGIDP-TFDPQVVDLASKLEFYVDEH--QNKIRRSIIDRE 256
Query: 119 VFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVE 178
+ S+DP G KDIDDA++ L+ + +G+ IADV+ +V P T LD +A KRGTS YLV+
Sbjct: 257 IISIDPVGSKDIDDAVYVKKLNDQRYFLGISIADVSFYVQPNTILDADAFKRGTSTYLVD 316
Query: 179 RRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQ 238
R I MLP ++ +ICSL R+ + + + +I +++K+ +SY E
Sbjct: 317 RVIPMLPHNISNNICSLNEGEFRMCITCDMVIDKDGKICWKDVYPAIMKNYRQMSYDEVN 376
Query: 239 ARMDDSRLMDPLTTDLRNMNSLAKK----MRQRRIERGALTLASAEVKFQIDTETHDPLD 294
+ + T ++ M AK+ +R ++I+ G + E K +D ET P+D
Sbjct: 377 DFYEGKSRFESATLTMKEMLLEAKELHHILRNKKIKDGYVDFDIKEPKIILD-ETGVPID 435
Query: 295 IGMYQIREANQMVEEFMLAANVSVA-------EQILRQFPLCS--LLRRHPSPTKEMLEP 345
I +Y+ + A MVE+FM+AAN +V ++ L++F L + R H P+ L+
Sbjct: 436 IKIYERKTAQMMVEDFMIAANEAVTMFAEEHMDKTLKEFNLEMPFIYRVHDKPSIINLQK 495
Query: 346 LLRTAAAVGLNLDVSSSKALADSLDRAVG-DDPYFN-KLIRILATRCMTQAVY--FCSGD 401
A + N+ +++ + +D + N LI L R M +A Y +G
Sbjct: 496 FEIEAKKLSFNISHDFENIQPNTISNWLKMNDNHVNLPLISKLLLRSMAKASYEIINTG- 554
Query: 402 LTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLL 436
H+GLA+ YTHFTSPIRRY D++VHRLL
Sbjct: 555 -------HFGLASDNYTHFTSPIRRYPDLIVHRLL 582
>sp|Q9PK00|RNR_CHLMU Ribonuclease R OS=Chlamydia muridarum (strain MoPn / Nigg) GN=rnr
PE=3 SV=1
Length = 692
Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 127/412 (30%), Positives = 196/412 (47%), Gaps = 25/412 (6%)
Query: 111 RLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKR 170
R DLRDL F++D KD DDA+ T GN+ +GVHIADV+++V P + LD EA+KR
Sbjct: 204 RKDLRDLLCFTIDSASAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDQEAAKR 263
Query: 171 GTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCA 230
S+Y + I MLP L++++CSL+ +V+RLA SV + E + R +SVI+S
Sbjct: 264 CNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKEGFLSDYRILRSVIRSKY 323
Query: 231 ALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETH 290
++Y E + + +L P++ + M L++ R +RG L +D
Sbjct: 324 RMTYDEVD-EIIEKKLAHPISKTILEMAELSRIFSDIREQRGCTRLVLPSFTMSLDN-LQ 381
Query: 291 DPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTA 350
+P+ + + A++++EEFML AN +A I Q + R H P +E L TA
Sbjct: 382 EPVALVENKQTAAHKLIEEFMLKANEVIAYHISHQ-GITMPFRIHEPPNEENLLLFRETA 440
Query: 351 AAVGLNLDVSSSKA--LADSLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFH 408
A+G + + ++ L P ++ R M A Y
Sbjct: 441 KAMGFTITQTPTQEPDYQYLLQETSAGHP-LEPILHSQFVRSMKTASYSTENK------G 493
Query: 409 HYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRN 468
HYGL YTHFTSPIRRY D++VHRLL L + + L I + + R
Sbjct: 494 HYGLCLDYYTHFTSPIRRYVDLIVHRLLFHPLSV--------EEGHLEQIVRACSSQERV 545
Query: 469 AQMASRGSVELHTLIYFRK----RP-TDTEARIVKIRSNGFIVFVPKFGIEG 515
A A + + + +K +P T +A I+ + G +P+ EG
Sbjct: 546 AAKAEGAFINIKKARFLKKFLDEQPATLYKAFIITVSPEGLSFVLPELCHEG 597
>sp|O84402|RNR_CHLTR Ribonuclease R OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=rnr
PE=3 SV=1
Length = 694
Score = 176 bits (446), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 195/412 (47%), Gaps = 25/412 (6%)
Query: 111 RLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKR 170
R DLRDL F++D KD DDA+ T GN+ +GVHIADV+++V P + LD EA+KR
Sbjct: 204 RKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDREAAKR 263
Query: 171 GTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCA 230
S+Y + I MLP L++++CSL+ +V+RLA SV + E + R +SVI+S
Sbjct: 264 CNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKEGFLSDYRILRSVIRSKY 323
Query: 231 ALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETH 290
++Y E + + + P++ + M L++ R +RG L +D
Sbjct: 324 RMTYDEVD-EIIEKKQTHPISKTILKMAELSRIFSDIREQRGCTRLVLPSFTMSLDN-LQ 381
Query: 291 DPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTA 350
+P+ + + A++++EEFML AN +A I Q + R H P +E L TA
Sbjct: 382 EPVALIENKQTAAHKLIEEFMLKANEVIAYHISHQ-GITMPFRTHEPPNEESLLVFQETA 440
Query: 351 AAVGLNLDVSSSKA--LADSLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFH 408
A+G + + ++ L P ++ R M A Y
Sbjct: 441 KAMGFTITQTPAQEPDYQYLLQETTAGHP-LEPILHSQFVRSMKTASYSTENK------G 493
Query: 409 HYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRN 468
HYGL YTHFTSPIRRY D++VHRLL L + + L I + + R
Sbjct: 494 HYGLCLDYYTHFTSPIRRYVDLIVHRLLFHPLSV--------EEEHLEQIVRACSSQERI 545
Query: 469 AQMASRGSVELHTLIYFRK----RP-TDTEARIVKIRSNGFIVFVPKFGIEG 515
A A V + + +K +P T +A I+ G +P+F EG
Sbjct: 546 AAKAEGAFVNIKKARFLKKFIEEQPATLYKAFIITASPEGISFVLPEFCHEG 597
>sp|P21499|RNR_ECOLI Ribonuclease R OS=Escherichia coli (strain K12) GN=rnr PE=1 SV=2
Length = 813
Score = 176 bits (446), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 134/471 (28%), Positives = 222/471 (47%), Gaps = 29/471 (6%)
Query: 107 ANPIRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDE 166
A R+DLRDL + ++D +D DDA++C G + + V IADV+ +V P TPLD E
Sbjct: 256 AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTPLDRE 315
Query: 167 ASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVI 226
A RGTSVY + I MLP+ L+ +CSL V+RL ++ + + ++ ++V+
Sbjct: 316 ARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVM 375
Query: 227 KSCAALSYVEA----QARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVK 282
S A L+Y + Q D PL L +++L K + + R ERG ++ S E K
Sbjct: 376 SSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAK 435
Query: 283 FQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEM 342
F + E I Q +A++++EE M+ AN+S A + + + +L R H P+ E
Sbjct: 436 FIFNAERRIE-RIEQTQRNDAHKLIEECMILANISAA-RFVEKAKEPALFRIHDKPSTEA 493
Query: 343 LEPLLRTAAAVGLNLDVSSSKALAD--SLDRAVGDDPYFNKLIRILATRCMTQAVYFCSG 400
+ A +GL L + D L +V D P ++++ + R M QA+Y
Sbjct: 494 ITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPD-AEMLQTMLLRSMKQAIY---- 548
Query: 401 DLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHR----LLSASLG----IYKLPSVFQDR 452
P H+GLA Y HFTSPIRRY D+ +HR LL+ G +
Sbjct: 549 --DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSM 606
Query: 453 PQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDT-EARIVKIRSNGFIVFVPKF 511
++ + + + R A A+R + + + + + I + GF V +
Sbjct: 607 EEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDL 666
Query: 512 GIEGPVYLTPRGQKGSGDWY-VDEQQQKIVKMDGNLSYSVLQTVNIHMEVV 561
I+G V+++ D+Y D+ Q+++ +Y + V + +E V
Sbjct: 667 FIDGLVHVSSL----DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAV 713
>sp|P30851|RNR_SHIFL Ribonuclease R OS=Shigella flexneri GN=rnr PE=3 SV=4
Length = 813
Score = 175 bits (443), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 134/471 (28%), Positives = 222/471 (47%), Gaps = 29/471 (6%)
Query: 107 ANPIRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDE 166
A R+DLRDL + ++D +D DDA++C G + + V IADV+ +V P TPLD E
Sbjct: 256 AKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDRE 315
Query: 167 ASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVI 226
A RGTSVY + I MLP+ L+ +CSL V+RL ++ + + ++ ++V+
Sbjct: 316 ARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVM 375
Query: 227 KSCAALSYVEA----QARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVK 282
S A L+Y + Q D PL L +++L K + + R ERG ++ S E K
Sbjct: 376 SSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAK 435
Query: 283 FQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEM 342
F + E I Q +A++++EE M+ AN+S A + + + +L R H P+ E
Sbjct: 436 FIFNAERRIE-RIEQTQRNDAHKLIEECMILANISAA-RFVEKAKEPALFRIHDKPSTEA 493
Query: 343 LEPLLRTAAAVGLNLDVSSSKALAD--SLDRAVGDDPYFNKLIRILATRCMTQAVYFCSG 400
+ A +GL L + D L +V D P ++++ + R M QA+Y
Sbjct: 494 ITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPD-AEMLQTMLLRSMKQAIY---- 548
Query: 401 DLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHR----LLSASLG----IYKLPSVFQDR 452
P H+GLA Y HFTSPIRRY D+ +HR LL+ G +
Sbjct: 549 --DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSM 606
Query: 453 PQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDT-EARIVKIRSNGFIVFVPKF 511
++ + + + R A A+R + + + + + I + GF V +
Sbjct: 607 EEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDL 666
Query: 512 GIEGPVYLTPRGQKGSGDWY-VDEQQQKIVKMDGNLSYSVLQTVNIHMEVV 561
I+G V+++ D+Y D+ Q+++ +Y + V + +E V
Sbjct: 667 FIDGLVHVSSL----DNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAV 713
>sp|O67834|RNR_AQUAE Ribonuclease R OS=Aquifex aeolicus (strain VF5) GN=rnr PE=3 SV=1
Length = 705
Score = 172 bits (435), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 141/472 (29%), Positives = 229/472 (48%), Gaps = 26/472 (5%)
Query: 111 RLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKR 170
R DLR+ F++DP D DDA+ G +++ VHIADV+ +V GT D EA KR
Sbjct: 240 RRDLREQLCFTIDPEKAGDFDDAVAIELTPEGYYKLYVHIADVSYYVREGTETDKEAYKR 299
Query: 171 GTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCA 230
G + Y +R + MLP+ L+ +CSLR + ++LAF+V + + +SVI+S A
Sbjct: 300 GFTYYFPDRALHMLPEKLSAKLCSLRPNEDKLAFTVEMVFDESGNLKAYDIYESVIRSKA 359
Query: 231 ALSYVEAQARMDDSRLMDP----LTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQID 286
L+Y EA A + ++ L LR M +L + + ++R E G++ E + +D
Sbjct: 360 RLTYNEALALIVGDPALEKKFPNLVEPLRMMETLYRILSRKRWEMGSIDFDLPEAEVIVD 419
Query: 287 TETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPL 346
E +P I Y+ A++++E FM++AN +VA + C L R H P +E +E L
Sbjct: 420 -EYGEPTAIYPYERHVAHRIIEHFMISANETVALHLEHAGYPC-LYRVHEPPDEEKVENL 477
Query: 347 LRTAAAVGLNLDVSSSKALADSLDRAVGDD----PYFNKLIRILATRCMTQAVYFCSGDL 402
L GL V + + +D P N L+R L R M +A Y
Sbjct: 478 LEILE--GLGYKVKRPHEYTPKFFQKIIEDFEGRPEEN-LVRFLTLRAMARAKY------ 528
Query: 403 TPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNL 462
+P H+GLA Y HFTSPIRRY D++VHRLL +L ++ + L ++L
Sbjct: 529 SPHNVGHFGLALEHYAHFTSPIRRYPDIIVHRLLKKALRGEEI-DYEKTLAYLEEAGNHL 587
Query: 463 NYRHRNAQMASRGSVELHTLIYFRKRPTDTEARIVK-IRSNGFIVFVPKFGIEGPVYLTP 521
+ + R A A +++ Y + R + I+ + + GF V + + +EG V +
Sbjct: 588 SKQERIADEAEMEAIDYLKARYMKGRIGEEFIGIITGVVAFGFFVELEENLVEGLVKINT 647
Query: 522 RGQKGSGDWYV-DEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPKLQL 572
+ D YV DE ++V + + + V + V+ + R + +L
Sbjct: 648 L----TDDEYVFDEPAHRLVGVRTGKVFRLGDHVKVRCIAVDEERARVEFEL 695
>sp|P24276|SSD1_YEAST Protein SSD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SSD1 PE=1 SV=1
Length = 1250
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 139/525 (26%), Positives = 235/525 (44%), Gaps = 31/525 (5%)
Query: 13 ALFVPKDRRIPKIRIQTR--------QLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGE 64
A F P D+++P I I T +K + ++ W S +PFG V +G+
Sbjct: 582 AWFKPTDKKVPLIAIPTELAPKDFVENADKYSEKLFVASIKRWPITSLHPFGILVSELGD 641
Query: 65 IGDRDTESEMVLIDNDIDARPFSTQV-----LACLPPLPWSVSSEDLANPIRLDLRDLRV 119
I D DTE + +L DN+ + + Q PLP + S + D + +
Sbjct: 642 IHDPDTEIDSILRDNNFLSNEYLDQKNPQKEKPSFQPLPLTAESLEYRRNF-TDTNEYNI 700
Query: 120 FSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVER 179
F++ G + ALH +G E+G H+ DVT+ + G+ +D A KR ++V++ ++
Sbjct: 701 FAISELGWVS-EFALHVRNNGNGTLELGCHVVDVTSHIEEGSSVDRRARKRSSAVFMPQK 759
Query: 180 RIDMLPKPLTEDICSLRADVERLAFSVIWEL-TPEAEIISTRYTKSVIKSCAALSYVEAQ 238
+++LP+ +++ SL E SV++ L + I ST +S I LS
Sbjct: 760 LVNLLPQSFNDEL-SLAPGKESATLSVVYTLDSSTLRIKSTWVGESTISPSNILSL---- 814
Query: 239 ARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMY 298
++D+ T+ L + +A+ RRI TL + + +D+ +
Sbjct: 815 EQLDEKLSTGSPTSYLSTVQEIARSFYARRINDPEATLLPTLSLLESLDDEKVKVDLNIL 874
Query: 299 QIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLD 358
++ E N +VAE+I + +LLRR P + + G N D
Sbjct: 875 DRTLGFVVINEIKRKVNSTVAEKIYTKLGDLALLRRQMQPIATKMASFRKKIQNFGYNFD 934
Query: 359 VSSSKALADSLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYT 418
+++ L + + DD I IL + M +A YF +G + P ++ HY L P+YT
Sbjct: 935 TNTADELIKGVLKIKDDDVRVG--IEILLFKTMPRARYFIAGKVDPDQYGHYALNLPIYT 992
Query: 419 HFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVE 478
HFT+P+RRYAD VVHR L A I+ P +D L ++ N++ A A ++
Sbjct: 993 HFTAPMRRYADHVVHRQLKAV--IHDTPYT-EDMEALKITSEYCNFKKDCAYQAQEQAIH 1049
Query: 479 LHTLIYFRKRPTDTE-----ARIVKIRSNGFIVFVPKFGIEGPVY 518
L T A ++++ + F VF+P+FGIE V+
Sbjct: 1050 LLLCKTINDMGNTTGQLLTMATVLQVYESSFDVFIPEFGIEKRVH 1094
>sp|Q9Z848|RNR_CHLPN Ribonuclease R OS=Chlamydia pneumoniae GN=rnr PE=3 SV=1
Length = 676
Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 191/412 (46%), Gaps = 25/412 (6%)
Query: 111 RLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKR 170
R DLRDL F++D +D DDA+ T + N+ +GVHIADV+++V P + LD EA+KR
Sbjct: 207 RKDLRDLLCFTIDSSTARDFDDAISLTYDHNNNYILGVHIADVSHYVTPHSHLDKEAAKR 266
Query: 171 GTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCA 230
S Y + I MLP L++++CSL+ +V+RLA SV T + + +SVI+S
Sbjct: 267 CNSTYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFTKSGHLSDYQIFRSVIRSKY 326
Query: 231 ALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETH 290
++Y E + + + PL+ L M +L+KK R ERG + V +D
Sbjct: 327 RMTYDEVD-NIIEKKHSHPLSKILNEMATLSKKFSDIREERGCIRFVLPSVTMSLDN-LQ 384
Query: 291 DPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTA 350
+P+ + +++++EEFML AN VA I Q + R H P E L A
Sbjct: 385 EPVALIENHQTFSHKLIEEFMLKANEVVAYHISHQ-GVSLPFRSHEPPNDENLLAFQELA 443
Query: 351 AAVGLNLDVSSSKA--LADSLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFH 408
+G ++ + ++ L P +++ R M A Y
Sbjct: 444 KNMGFDITFTPTQEPDYQYLLQTTSAGHP-LEQVLHSQFVRSMKTASYSTENK------G 496
Query: 409 HYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRN 468
HYGL YTHFTSPIRRY D++VHRLL L I D+ L I + + R
Sbjct: 497 HYGLKLDYYTHFTSPIRRYIDLIVHRLLFNPLSI--------DQTHLEIIVRACSTKERV 548
Query: 469 AQMASRGSVELHTLIYFRK----RPTDT-EARIVKIRSNGFIVFVPKFGIEG 515
+ A L + K +P T A I+ G V +F EG
Sbjct: 549 SAKAENSFENLKKTRFINKFLQEQPKTTYHAYIITANHEGLSFVVTEFCHEG 600
>sp|Q8K917|RNR_BUCAP Ribonuclease R OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=rnr PE=3 SV=1
Length = 726
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 134/501 (26%), Positives = 249/501 (49%), Gaps = 29/501 (5%)
Query: 86 FSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDALHCTALSSG--N 143
+S +V L + ++ +D N R+DLR L F++D +D DDA+ C ++G
Sbjct: 239 WSKEVEYQLCGIKSKINEKDFKN--RIDLRHLPFFTIDEEDARDFDDAIFCKKKTNGEKG 296
Query: 144 FEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLA 203
+++ V I+DV+ ++ P T LD ASKRGTS+Y I MLP+ ++ D+CSL + ERL+
Sbjct: 297 WKLWVAISDVSYYIQPDTALDKAASKRGTSIYFPSLVIPMLPEKISIDVCSLNPNAERLS 356
Query: 204 FSVIWELTPEAEIISTRYTKSVIKSCAALSYVEA----QARMDDSRLMDPLTTDLRNMNS 259
L+ + E+I+ ++ ++VI S +Y E ++ L ++N++S
Sbjct: 357 LICEMNLSNKGELITYKHYEAVICSHGRFTYNEIFKIWNGDIELCFKYKKLLKYIQNLSS 416
Query: 260 LAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVA 319
L K +++ + + + + E KF +D+ + +I +A++ +E M+ AN++ A
Sbjct: 417 LQKILKKYNVSKRGIYFENIEAKFILDS-NYRIKNISQNIRNDAHKFIESCMILANIASA 475
Query: 320 EQILRQFPLCSLLRRHPSPTKEML---EPLLRTAAAVGLNLDVSSSKALADSLDRAVGDD 376
E +++ L R H P K+ + +L+ L ++ S ++ L +
Sbjct: 476 E-FVKKHKSPVLFRNHDRPDKDSIINFRSVLKKLGLSLLGGEIPESTDYSELLKKISTRP 534
Query: 377 PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLL 436
Y ++I+ + R M QAVY +P H+GL+ Y HFTSPIRRY D++VHR++
Sbjct: 535 DY--EMIQTILLRSMKQAVY------SPDNRGHFGLSLSSYVHFTSPIRRYPDLLVHRVI 586
Query: 437 SASLGIYKLPSVFQ--DRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEA 494
L K S + + ++T I + + R A A+R ++ + +K+ D
Sbjct: 587 KNLLLKEKNLSKYHLYNLNEVTKIGLHCSMTERRADEATRDVLDWLKCDFMQKKIGDVLT 646
Query: 495 RIV-KIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQT 553
++ + S GF V + +F I+G V++ +Y D K++ +Y + T
Sbjct: 647 GVISNVTSFGFFVRLNQFFIDGLVHIATLIDDY---YYFDSIGLKLIGKSSKNTYCLGDT 703
Query: 554 VNIHMEVVEPQPNRPKLQLTL 574
+ + +V+ N K++L+L
Sbjct: 704 LKV--KVISVNLNERKIELSL 722
>sp|Q9KNY1|RNR_VIBCH Ribonuclease R OS=Vibrio cholerae serotype O1 (strain ATCC 39315 /
El Tor Inaba N16961) GN=rnr PE=3 SV=1
Length = 821
Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 144/534 (26%), Positives = 250/534 (46%), Gaps = 52/534 (9%)
Query: 10 VAHALFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRD 69
+ H + +P D R ++GN+ +++ + ++R G V V+GE
Sbjct: 179 IHHDILIPNDLRAGA------RMGNV----VVIEITDRGTRNRGMMGKVVEVLGENMAPG 228
Query: 70 TESEMVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKD 129
E+++ + + I + +V + L V E A R+DLR L + ++D +D
Sbjct: 229 METQIAIRTHQI-PHEWPAEVEQQVAGLTEEVPEE--AKQGRVDLRALPLVTIDGEDARD 285
Query: 130 IDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLT 189
DDA++C A G + + V IADV+ +V P T LD EA RG SVY + + MLP+ L+
Sbjct: 286 FDDAVYCEAKKGGGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLS 345
Query: 190 EDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMD-DSRLMD 248
+CSL V+RL ++ ++ ++ ++V+ S A L+Y + ++ D L +
Sbjct: 346 NGLCSLNPQVDRLCMVCEMTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRE 405
Query: 249 ---PLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKF----QIDTETHDPLDIGMYQIR 301
L L ++ + + ++ R ERGA+ + E KF Q E+ +P+ +R
Sbjct: 406 RYKALVPHLEELHKMYQVLKSARDERGAIEFETVETKFIFNAQRKIESIEPV------VR 459
Query: 302 -EANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVS 360
+A++++EE M+ AN++ A ++ + +L R H P +E L +GL+L
Sbjct: 460 NDAHKLIEECMILANIASA-SLVEKAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGG 518
Query: 361 SSKALAD--SLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYT 418
+ D +L + +G+ P +LI+ + R M QAVY H+GLA Y
Sbjct: 519 LEPSPTDYANLMKQIGERP-DKELIQTMLLRSMKQAVY------NADNAGHFGLALKRYA 571
Query: 419 HFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTS-----------IADNLNYRHR 467
HFTSPIRRY D+++HR + I K QDR T + + R
Sbjct: 572 HFTSPIRRYPDLLLHRAIKYL--IAKQEGRNQDRWTPTGGYHYSFDDMDFYGEQCSMTER 629
Query: 468 NAQMASRGSVELHTLIYFRKR-PTDTEARIVKIRSNGFIVFVPKFGIEGPVYLT 520
A A+R + Y + + E + + S GF V + + I+G V+++
Sbjct: 630 RADDATREVSDWLKCEYMQDHVGEELEGVVANVTSFGFFVRLTELHIDGLVHIS 683
>sp|P40611|RNR_VIBPA Ribonuclease R OS=Vibrio parahaemolyticus serotype O3:K6 (strain
RIMD 2210633) GN=rnr PE=3 SV=2
Length = 835
Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 151/542 (27%), Positives = 251/542 (46%), Gaps = 58/542 (10%)
Query: 11 AHALFVPKDRRI------PKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGE 64
++ VP D RI P ++GN+ +++ + +SR G V V+GE
Sbjct: 168 GYSYVVPDDSRISQDILIPNEHKAGARMGNV----VVIEITDRGSRSRGMMGKVVEVLGE 223
Query: 65 IGDRDTESEMVLIDNDIDARPFS--TQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSV 122
E+++ + + I P+ V + L V E A R+DLR+L + ++
Sbjct: 224 NMAPGMETQIAIRTHQI---PYEWPEAVEKQIVNLGEEVPEE--AKVGRVDLRELPLVTI 278
Query: 123 DPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRID 182
D +D DDA+ C G + + V IADV+ +V P + LD EA RG SVY + +
Sbjct: 279 DGEDARDFDDAVFCEKKKDGGWRLWVAIADVSYYVRPDSALDKEAINRGNSVYFPSQVVP 338
Query: 183 MLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMD 242
MLP+ L+ +CSL V+RL ++ ++ S ++ ++V+ S A L+Y + A ++
Sbjct: 339 MLPEVLSNGLCSLNPQVDRLCMVCEMTISESGKLSSYKHYEAVMNSHARLTYSKVSAILE 398
Query: 243 -DSRLMD---PLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETH----DPLD 294
D L + PL + L ++++ K +++ R +RGA+ + E KF + E +P+
Sbjct: 399 GDEELRERYQPLVSHLEELHAMYKVLKEARDQRGAIEFETVETKFIFNAERKIESIEPV- 457
Query: 295 IGMYQIR-EANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAV 353
IR +A++++EE M+ AN++ A ++ + +L R H SP + L+ + +
Sbjct: 458 -----IRNDAHKIIEECMILANIASA-SLVEKAKEPALYRIHESPGELRLQGFRDFLSEL 511
Query: 354 GLNLDVSSSKALADSLDRA---VGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHY 410
GL L + D D A G +LI+ + R M QAVY H+
Sbjct: 512 GLELKGGLEPSPTDYADLARQIAGRQD--QELIQTMLLRSMKQAVY------NADNAGHF 563
Query: 411 GLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTS-----------IA 459
GLA Y HFTSPIRRY D+++HR + I K QDR T
Sbjct: 564 GLALKRYAHFTSPIRRYPDLLLHRAIKYL--IAKEEGRNQDRWTPTGGYHYSFDDMDFYG 621
Query: 460 DNLNYRHRNAQMASRGSVELHTLIYFRKRPTDT-EARIVKIRSNGFIVFVPKFGIEGPVY 518
+ + R A A+R + Y + D E I + S GF V + I+G V+
Sbjct: 622 EQCSMTERRADDATREVADWLKCEYMQDHVGDELEGVIANVTSFGFFVRLTDLHIDGLVH 681
Query: 519 LT 520
++
Sbjct: 682 IS 683
>sp|Q98QL0|RNR_MYCPU Ribonuclease R OS=Mycoplasma pulmonis (strain UAB CTIP) GN=rnr PE=3
SV=1
Length = 725
Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 104/330 (31%), Positives = 176/330 (53%), Gaps = 14/330 (4%)
Query: 111 RLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKR 170
R DLRD + ++D KD DDA++ + +F + VHIADV ++V + +D EA +R
Sbjct: 236 RKDLRDKLIITIDGEDTKDFDDAIYVEK-NKDHFLLSVHIADVAHYVKENSAIDKEALRR 294
Query: 171 GTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCA 230
TS+YL I MLP+ L+ ICSL V+RL S+ + + I T + +I S
Sbjct: 295 ATSIYLPHMVIPMLPEKLSNGICSLNPGVDRLVMSIDIFIDFQGNTIKTELYEGIINSKH 354
Query: 231 ALSYVEAQARMDDSRLMDP-LTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTET 289
L+Y + ++ +DP L L + L+K + + + G + L E K +D E
Sbjct: 355 RLTYNQVNDFYNNKIKLDPNLEKMLNDSLELSKILENYKKDEGYINLEIEESKVILDKEG 414
Query: 290 HDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRT 349
+ I + Q + ++E FM+ AN +VA + + + L S+ R H +P+ E L +T
Sbjct: 415 K-TVGIKVIQRGLSEVLIENFMVRANEAVAWK-MNKLKLPSIYRVHDNPSIESLVLFEKT 472
Query: 350 AAAVGLNLD---VSSSKALADSLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPE 406
+G++ D ++S KA +DS ++ + + + ++++ R M +A+Y +
Sbjct: 473 LKTLGIDFDTPKITSPKAFSDSFEK-IKQNYQIDNFVKLMVLRTMEKAIY------SDKN 525
Query: 407 FHHYGLAAPLYTHFTSPIRRYADVVVHRLL 436
H+GLA+ Y+HFTSPIRRY D+ +HRL+
Sbjct: 526 IGHFGLASSYYSHFTSPIRRYPDLQLHRLI 555
>sp|P44907|RNR_HAEIN Ribonuclease R OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=rnr PE=3 SV=1
Length = 782
Score = 159 bits (402), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 148/570 (25%), Positives = 265/570 (46%), Gaps = 47/570 (8%)
Query: 16 VPKDRRIPKIRI--QTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESE 73
VP D RI + + + G + + ++V + P G ++G+ + E E
Sbjct: 174 VPDDSRIGRDILVPNEHRNGARMGQVVVVELQERSASFNQPIGVITEILGDNMAKGMEVE 233
Query: 74 MVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDA 133
+ L ++DI F + V + VS E A R+DLR+L + ++D +D DDA
Sbjct: 234 IALRNHDI-LHKFPSAVEKYVKKFTEEVSEE--AKKGRVDLRNLPLVTIDGEDARDFDDA 290
Query: 134 LHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDIC 193
++C G +++ V IADV+ +V + LD EA RG SVY R + MLP+ L+ +C
Sbjct: 291 VYCEKHGKG-WKLWVAIADVSYYVRLRSTLDVEAHNRGNSVYFPNRVVPMLPEILSNGLC 349
Query: 194 SLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMD-DSRLMDPLTT 252
SL V+RL +++ + ++ R+ ++V+ S A L+Y + ++ D L +T
Sbjct: 350 SLNPQVDRLCMVCEMQISAKGKLTDYRFYEAVMNSHARLTYTKVAKMLEGDEELRTRYST 409
Query: 253 ---DLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDT----ETHDPLDIGMYQIR-EAN 304
L + L + + R +RGA+ + E KF + E +P+ +R +A
Sbjct: 410 LVPHLEELYKLYQALLSARHQRGAIDFETIETKFIFNAMGRIERIEPV------VRNDAX 463
Query: 305 QMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVS---S 361
+++EE M AN++ A + + +L R H +P++E L + GL L+ +
Sbjct: 464 KIIEECMXLANIAAA-NFMEKHKEPALYRIHATPSEEKLTSFRTFLSEFGLTLEGGLKPT 522
Query: 362 SKALADSLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFT 421
+K A L++ V + P ++LI+ + R ++QAVY H+GLA Y HFT
Sbjct: 523 TKDYAALLEK-VKERPD-HELIQTMLLRSLSQAVYHADN------IGHFGLALEEYAHFT 574
Query: 422 SPIRRYADVVVHR----LLSASLGIYKLPS----VFQDRPQLTSIADNLNYRHRNAQMAS 473
SPIRRY D+ +HR LL+ G + + ++ + ++ + R A A+
Sbjct: 575 SPIRRYPDLTLHRGIKYLLAKEQGAKRKTTDTGGYHYSFDEMDLLGNHCSMTERRADDAT 634
Query: 474 RGSVELHTLIYFRKR-PTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWY- 531
R + Y + + I + G V + I+G V+++ D+Y
Sbjct: 635 REVADWLKCEYMQDHVGGEFSGVISSVTGFGLFVRLDDLFIDGLVHISTL----ENDYYQ 690
Query: 532 VDEQQQKIVKMDGNLSYSVLQTVNIHMEVV 561
D +Q+++ + + Y + V I +E V
Sbjct: 691 FDAAKQRLIGENSGMQYRLGDKVRIKVEAV 720
>sp|P57628|RNR_BUCAI Ribonuclease R OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=rnr PE=3 SV=2
Length = 731
Score = 152 bits (384), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 140/511 (27%), Positives = 236/511 (46%), Gaps = 42/511 (8%)
Query: 86 FSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFE 145
+S +V + + ++ D N R DLR F++D +D DDA+ C N E
Sbjct: 237 WSKEVKKQVYEISRKINQYDFKN--RTDLRHFPFFTIDDEDARDFDDAVFCK--RKANPE 292
Query: 146 VG----VHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVER 201
G V IADV+ +V P TPLD A +RGTSVY I MLP+ ++ D+CSL+ +VER
Sbjct: 293 EGWILWVAIADVSCYVQPNTPLDKAALERGTSVYFPSLVIPMLPEKISTDLCSLKPNVER 352
Query: 202 LAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLM----DPLTTDLRNM 257
L L+ + E+IS ++ + +I S +Y E + + D+ N+
Sbjct: 353 LCLICEMSLSKQGELISYKHYEGIICSHGRFTYNEIFKIWNGDIFLRSKYKKFLKDIENL 412
Query: 258 NSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQ-IR-EANQMVEEFMLAAN 315
+ L + I + + + E KF +D+ +YQ IR +A++ +E M+ AN
Sbjct: 413 SCLQNIFNKDNISKKGIYFENIEPKFVLDSNLRIK---SIYQNIRNDAHKFIESCMILAN 469
Query: 316 VSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNL--DVSSSKALADSLDRAV 373
V+ A + + ++ L R H P K+ + L +G L S +L + V
Sbjct: 470 VASA-RFVEKYKYPVLFRNHDRPKKDNVVSLRLFLNELGFTLLGGDSPESVHYSNLLKNV 528
Query: 374 GDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVH 433
D P + ++I+ + R MTQAVY +P H+GL+ Y HFTSPIRRY D+++H
Sbjct: 529 SDRPEY-EMIQTVLLRSMTQAVY------SPDNRGHFGLSLSSYVHFTSPIRRYPDLILH 581
Query: 434 RLL--------SASLGIYKLPSV-FQDRPQLTSIADNLNYRHRNAQMASRGSVE-LHTLI 483
R++ + S Y S ++ I + + R A A+R ++ L
Sbjct: 582 RVIKYLLFKDKNTSKSNYNFYSAHLYSTGEIKKIGAHCSITERRADEANRDVIDWLKCDF 641
Query: 484 YFRKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMD 543
++K I + + GF V + +F I+G V++ +Y D K++
Sbjct: 642 MYKKIGCILNGVISNVTTFGFFVRLNQFFIDGLVHINSLNDDY---YYFDSLGLKLIGKS 698
Query: 544 GNLSYSVLQTVNIHMEVVEPQPNRPKLQLTL 574
+Y + + + +V+ N K++L+L
Sbjct: 699 TKNTYCLGDALKV--KVISVNLNEKKIELSL 727
>sp|P47350|RNR_MYCGE Ribonuclease R OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 /
NCTC 10195) GN=rnr PE=3 SV=1
Length = 725
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 131/492 (26%), Positives = 225/492 (45%), Gaps = 40/492 (8%)
Query: 37 DKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESEMVLIDNDIDARPFSTQVLACLPP 96
+ +I +D +D + +V+G D + +++DN I F T +
Sbjct: 193 NTKIAFQIDEYDPDNNLCKVSVQQVLGNNDDPLINIKAIMLDNSI---VFETNDVVEQHA 249
Query: 97 LPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNF 156
S +E+ R DL DL +VDP KD+DDA++ + +G F + V IADV ++
Sbjct: 250 NKLSFDTEEQHKAYRQDLTDLAFVTVDPTTSKDLDDAIYVKTIPTG-FVLYVAIADVAHY 308
Query: 157 VHPGTPLDDEASKRGTSVYLVERRI-DMLPKPLTEDICSLRADVERLAFSVIWELTPEAE 215
V+ + +D EA + +S+YL + MLP+ L+ +CSL +R +
Sbjct: 309 VNRNSEIDIEAKHKTSSIYLPGHYVVPMLPEQLSNQLCSLNPAQKRYVVVCEISFDNQGR 368
Query: 216 IISTRYTKSVIKSCAALSYVEAQARMDDSRLMD---PLTTDLRNMNSLAKKMRQRRIERG 272
I + + + I S SY + +++ ++ + L+ +L+ ++ +R +RG
Sbjct: 369 IKTNKLYPATIISKNRFSYDQVNKWLNNKSELNCDETVINSLKAAFTLSDLIQAQRQKRG 428
Query: 273 ALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLL 332
+ L+ E + +D E + P+ I +A M+E M+ AN +VA +L +
Sbjct: 429 TIDLSHKETEIVVD-EHYFPIKINFLVHDKAETMIENLMVVANETVA-WVLTNNKIALPY 486
Query: 333 RRHPSPTKEMLEPLLRTAAAVGL-----NLDVSSSKALADSLDRAVGDDPYFNKLIRILA 387
R HP P+K+ L+ L+ T + + NLD +S +A L+ D+P + ++ IL
Sbjct: 487 RVHPRPSKKKLQSLIETVGELNITKPQFNLDTVTSSQIASWLNEN-KDNPSY-EIFVILL 544
Query: 388 TRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPS 447
R + +A Y + P H+ + + YTHFTSPIRRY D+ +HRLL L P
Sbjct: 545 LRTLGKAFY----SVNP--LMHFSIGSNHYTHFTSPIRRYIDLTIHRLLWMHLFT---PD 595
Query: 448 VFQD------RPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEARIVKIRS 501
F D + +L IAD +N R + + T + K+ T +
Sbjct: 596 QFTDNERDQLKQELEKIADTVNDTEIKIINCERNANDYLTTLLLSKQIGKTFS------- 648
Query: 502 NGFIVFVPKFGI 513
GFI + FGI
Sbjct: 649 -GFISAITSFGI 659
>sp|P75529|RNR_MYCPN Ribonuclease R OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=rnr PE=3 SV=1
Length = 726
Score = 143 bits (360), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 123/423 (29%), Positives = 203/423 (47%), Gaps = 38/423 (8%)
Query: 107 ANPIRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDE 166
+ P R DL +L ++DP KD+DDA++ G F + V IADV +V + LD E
Sbjct: 260 SKPYRKDLTELAFVTIDPATSKDLDDAIYVKRTDKG-FVLYVAIADVAYYVQRNSELDIE 318
Query: 167 ASKRGTSVYLVERRI-DMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSV 225
A + +S+YL + MLP+ L+ ++CSL + +R EA + + +
Sbjct: 319 ARHKTSSIYLPGYYVVPMLPERLSNELCSLNPNEKRYVVVCELNFDHEARLNFSEVYPAT 378
Query: 226 IKSCAALSYVEAQARMDDS-RLMDPLTTDLRNMN---SLAKKMRQRRIERGALTLASAEV 281
I S +Y E ++DS L D T L ++ +L++ + ++R ++G + L+ +E
Sbjct: 379 IVSQRRFAYSEVNDWLEDSDALKDESATVLESLKAGFTLSELIAEQRKKKGTIDLSHSET 438
Query: 282 KFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKE 341
+ +D + + P++I +A M+E M+ AN +VA L + R HP P+K+
Sbjct: 439 EVVVD-QNYYPIEIRFLTHGKAETMIENLMVVANEAVA-WTLTNHKVHLPYRVHPRPSKK 496
Query: 342 MLEPLLRTAAAVGLN-----LDVSSSKALADSLDRAVGDDPYFNKLIRILATRCMTQAVY 396
L+ LL + + LD +S +A L + D+P ++ + IL R + +A Y
Sbjct: 497 KLQMLLENIVELKITQPNFVLDTVTSTQIAAWL-KENKDNPSYDIFV-ILLLRTLGKAFY 554
Query: 397 FCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQD--RPQ 454
+ + H+ + + YTHFTSPIRRYAD+ VHRLL +L P F D R Q
Sbjct: 555 IVNPLI------HFSIGSHHYTHFTSPIRRYADLTVHRLLWMNLFT---PERFTDTEREQ 605
Query: 455 LTS----IADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEARIVKIRSNGFIVFVPK 510
L + I + +N R + + T +Y K+ T +GFI +
Sbjct: 606 LNAELEQICETINDTEIKINGCERTANDYLTTLYLSKQVGQT--------FHGFISAITS 657
Query: 511 FGI 513
FGI
Sbjct: 658 FGI 660
>sp|O94525|YBU1_SCHPO Uncharacterized ribonuclease C609.01 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC609.01 PE=3 SV=1
Length = 1157
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 138/525 (26%), Positives = 226/525 (43%), Gaps = 53/525 (10%)
Query: 15 FVPKDRRIPKIRIQTRQL--------GNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIG 66
F P D+RIP I I + Q+ + DK + + W S +PFG IG IG
Sbjct: 503 FKPSDKRIPLIAISSDQVPPTFFTNNDDFKDKVFLAGIKRWPTTSLHPFGTLYESIGTIG 562
Query: 67 DRDTESEMVLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPG 126
D E + +L D F + C+ LP + +E+L R +LRD F + G
Sbjct: 563 DPKVEYKAILHDFSCHTYDFPESLSHCVKRLPTPIPAEELQK--RYNLRDKLTFMI---G 617
Query: 127 CKDIDDALHC-TALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLP 185
+D ALH T G +G+H+ADV +V PLDDEA+ R + V L++ + LP
Sbjct: 618 TRDY--ALHIDTGSIDGVITLGIHVADVAYYVKQDMPLDDEAANRVSEVQLLQGSVPFLP 675
Query: 186 KPLTEDICSLRADVERLAFSVIWELT-PEAEIISTRYTKSVIKSCAALSYVEAQARMDDS 244
K ++E+I SL + L S++ +L ++ SVI + +S AQA + +
Sbjct: 676 KKVSEEI-SLIEGHDCLTISIVVQLDLKSGAVLQCSLGPSVIHPSSFISLESAQANLQTN 734
Query: 245 RLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGM-----YQ 299
+ + + L K ++ L L S D + + +I M +
Sbjct: 735 EALQLVDASAHVLTKLRLKTDKK------LDLQSLYCFEFCDGQIPNIQNINMSIFEAFP 788
Query: 300 IREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDV 359
I + Q +E ++ N VA ++ FP +LR++ P+ L+ + G+NL
Sbjct: 789 IACSLQQIEHWV---NEKVASHLMSVFPSKVILRKNQRPSD--FASLVAVSELTGVNLSA 843
Query: 360 SSSKA-----LADSLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAA 414
SS+ + +A + D+ K++ L R M + G + H+ +
Sbjct: 844 SSTPSEIMTEIATTKDKRT-------KMLLQLTLRRMCNESEYTIGTSNAKDVSHFVFSC 896
Query: 415 PLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSI---ADNLNYRHRNAQM 471
P YTHF P RRY D+ V R L + P +D L SI + L+ +RNAQ
Sbjct: 897 PYYTHFCHPTRRYIDICVQRQLREAFD--GRPDFSKDYRSLLSITQSCNTLSNFYRNAQE 954
Query: 472 ASRGS--VELHTLIYFRKRPTDTEARIVKIRSNGFIVFVPKFGIE 514
S + +L I R +A ++ + + + +FG+E
Sbjct: 955 KSLHAYLCQLLHSINLRSGLVKHKAFVLAVDQEYIDIVIYEFGLE 999
>sp|O74454|STS5_SCHPO Protein sts5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sts5 PE=1 SV=1
Length = 1066
Score = 122 bits (306), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 138/550 (25%), Positives = 247/550 (44%), Gaps = 68/550 (12%)
Query: 15 FVPKDRRIPKIRIQTRQ-----LGN---LLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIG 66
F P D+R+P I I T Q LGN + + ++ W S +PFG ++GE+G
Sbjct: 484 FKPSDKRVPLIAIPTEQAPTDFLGNDQAYAQRLFLASIKRWPVTSLHPFG---MLVGELG 540
Query: 67 DRDTESEMV---LIDNDIDARPF----STQVLACLPPLP---------WSVSSEDLANPI 110
D+ S V L D + + P+ +T + L L SED+ +
Sbjct: 541 SMDSMSAQVSALLHDTGVHSEPWEGSAATSAVTALNALSDNFLNVAGCADYRSEDVFLFV 600
Query: 111 RLDLRDLRVFSV-------DPPGCKD-IDDALHCTALSSGNFEVGVHIADVTNFVHPGTP 162
+ D+ V V + D + A H S+G + VG+H+ DV+ + PG+P
Sbjct: 601 KNDVSKAAVSEVKQHESNINSSSATDFVSSAFHIRPTSTG-YHVGIHVTDVSRVIEPGSP 659
Query: 163 LDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYT 222
LD E +R +V L ++ + + P L E + SLR D + S++ +++ +I T
Sbjct: 660 LDRELQRRSIAVNLCQKSVPLFPTTLGEAL-SLREDKDCYTMSLLLDVSSTGKIRGTWIG 718
Query: 223 KSVIKSCAALSYVEAQARMD-DSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEV 281
+VI+ A + EA + D+R LR ++++ ++R + +
Sbjct: 719 WAVIRPRKAYTMKEADELLQTDAR--------LRLFHTVSSRLRTHHLGTDVPLSRYCRL 770
Query: 282 KFQIDTE--THDPLDIGMYQIREANQMVEEFML-AANVSVAEQILRQFPLCSLLRRHPSP 338
+ D E + DP + ++ I A +++ E +L AAN +VA + ++F + LR P
Sbjct: 771 VRRWDEESCSFDPNETNLF-ISSAVEVLRETLLDAANRAVASHLRQEFRENAFLRTQRLP 829
Query: 339 TKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLIRILATRCMTQAVYFC 398
++E L A +G LD+SS+K+L SL ++ +D ++++ + +AVY
Sbjct: 830 SRENCRILQSMAIQMGCVLDLSSTKSLLRSL--SLIEDDTVRNILQLYYYKVTPRAVYEM 887
Query: 399 ---SGDLTPPEFHHYGL--AAPLYTHFTSPIRRYADVVVHR----LLSASLGIYKLPSVF 449
G+L + G+ + THFT+P+ RY D+VVH LL L K V+
Sbjct: 888 QKYKGNLA-SQMMSLGIEDESDDLTHFTAPLERYGDIVVHYQLQLLLRGELASEKRLRVW 946
Query: 450 QDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEARIVKIRSNGFIVFVP 509
+ A++ + R ++ A S+ + + + + + + + F VF P
Sbjct: 947 ------SQAANDASRRLVISKFAQETSIHIKIFSDWAESQVWQDGLVCFVAPSYFDVFFP 1000
Query: 510 KFGIEGPVYL 519
G+E V+L
Sbjct: 1001 SLGMEKRVHL 1010
>sp|A7MMD8|RNB_CROS8 Exoribonuclease 2 OS=Cronobacter sakazakii (strain ATCC BAA-894)
GN=rnb PE=3 SV=1
Length = 644
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 133/488 (27%), Positives = 218/488 (44%), Gaps = 65/488 (13%)
Query: 98 PWSVSSEDL-ANPIRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNF 156
P V++E L N R DL L ++D +D+DDAL+ AL ++ V IAD T +
Sbjct: 175 PDGVATEMLDENLTREDLTALDFVTIDSASTEDMDDALYVEALDGDRLQLTVAIADPTAW 234
Query: 157 VHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEI 216
+ G+ LD+ A R + YL I MLP+ L++D+CSLR V+R A + + I
Sbjct: 235 IAEGSKLDNIAKVRAFTNYLPGFNIPMLPRELSDDLCSLREGVQRPALVCRMIIEADGAI 294
Query: 217 I-STRYTKSVIKSCAALSYVEAQARMDDSRLMDP----LTTDLRNMNSLAKKMRQRRIER 271
+ ++I+S A L+Y + +++ P + +R + + ++ R E
Sbjct: 295 SDDIHFFAAIIESKAKLAYDDVSDWLEEKGDWQPGSEAIAAQIRLLQQICQRRSAWRTEH 354
Query: 272 GALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQ---FPL 328
+ + +F + E + LDI R AN++VEE M+AAN+ A ++LR F +
Sbjct: 355 ALVFKDRPDYRFVL-GEKGEVLDIVAEPRRIANRIVEESMIAANICAA-RVLRDKLGFGV 412
Query: 329 CSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLIRILAT 388
++ + E L LL++ G+++D + L P F KL R L
Sbjct: 413 YNVHAGFDPASTEQLATLLQSH---GMHVDANDVLTL-----------PGFCKLRRELDA 458
Query: 389 R----CMTQAVYFCS-GDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIY 443
+ ++ F S +++ H+GL Y +TSPIR+Y D+V HRLL A I
Sbjct: 459 QPSGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKA---II 515
Query: 444 KLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIY--FRKRPTDTEARI----- 496
K S RPQ + + R R +MA R ++ +Y F K T++R
Sbjct: 516 KGESA--TRPQDEATV-QMAERRRLNRMAER---DVGDWLYARFLKDKAGTDSRFAAEII 569
Query: 497 --------VKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSY 548
V++ NG + F+P P R D V Q+ V++ G Y
Sbjct: 570 DVSRGGMRVRLVDNGAVAFIP-----APFLHAVR------DELVCSQENGTVQIKGETVY 618
Query: 549 SVLQTVNI 556
V +++
Sbjct: 619 KVTDVIDV 626
>sp|B7VSB8|RNB_VIBSL Exoribonuclease 2 OS=Vibrio splendidus (strain LGP32) GN=rnb PE=3
SV=1
Length = 668
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 117/438 (26%), Positives = 198/438 (45%), Gaps = 50/438 (11%)
Query: 99 WSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVH 158
W + +D A+ R+D+ + ++D KD+DDAL+ +G+FE+ + IAD T ++
Sbjct: 183 WQI--KDDADLERVDMTHVPFVTIDGESTKDMDDALYAKKKENGDFELTIAIADPTAYIS 240
Query: 159 PGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEI-I 217
P +D A +RG ++YL R I MLP+ L +++CSL + R A ++ + I
Sbjct: 241 PDDAMDKVARERGFTIYLPGRNIPMLPRDLADNLCSLIENEVRPALCCTVTVSKDGVIGD 300
Query: 218 STRYTKSVIKSCAALSY--------VEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRI 269
+ + IKS A L+Y A + S + + +DL + A+ R
Sbjct: 301 DINFFAANIKSHARLAYDHVSDWLETGASEKWQPSEEIAAIVSDL---HQFAQARSAWRS 357
Query: 270 ERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLC 329
+ + +F++ +E +D + I R AN++VEE M++AN+ A ++L++
Sbjct: 358 ANAVVFPDRPDYRFEL-SEDNDVVAIHADMRRSANKLVEESMISANI-CAGRVLKESFNQ 415
Query: 330 SLLRRHPSPTKEMLEPLLR----TAAAVGLNLDVSSSKALADSLDRAVG--DDPYFNKLI 383
+ H E L +L A + S + A +L R +G D+ Y++ I
Sbjct: 416 GVFNCHSGFKAEKLTDVLELVNPEAETPFTEEQIVSLEGFA-TLRRWLGSLDNSYYDNRI 474
Query: 384 RILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIY 443
R QA S + P HY + +Y +TSPIR+Y D++ HR+L A + +
Sbjct: 475 RKF------QAYSEISNEPAP----HYAMGLDIYATWTSPIRKYGDMINHRMLKAHI-LR 523
Query: 444 KLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVEL---HTLIYFRKRPTDTEARI---- 496
K P+ D +I D L R+ MA R + TL T +A I
Sbjct: 524 KTPTQTPDE----TIGDELALHRRHHGMAERNVGDWLYARTLANAPVEETRFQAEIFDIN 579
Query: 497 -----VKIRSNGFIVFVP 509
V++ NG F+P
Sbjct: 580 RAGMRVRLLENGAAAFIP 597
>sp|A0KFR1|RNB_AERHH Exoribonuclease 2 OS=Aeromonas hydrophila subsp. hydrophila (strain
ATCC 7966 / NCIB 9240) GN=rnb PE=3 SV=1
Length = 673
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 118/423 (27%), Positives = 192/423 (45%), Gaps = 46/423 (10%)
Query: 111 RLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKR 170
R DL F++D KD+DDAL L +G +E+ V IAD T +V G+ LD EA++R
Sbjct: 191 RTDLTATPFFTIDGAKTKDMDDALAIRKLDNG-WELLVAIADPTAYVAEGSELDKEAAQR 249
Query: 171 GTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEII-STRYTKSVIKSC 229
+VY+ R + M+P+ L++++CSL+ ER + + ++ T + + I S
Sbjct: 250 AFTVYMPGRNVPMIPRTLSDELCSLKEGEERNTLCARLLIAEDGLLLEETEFFAARISSH 309
Query: 230 AALSYVEAQARMDDSRLMD---PLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQID 286
A L+Y + + + +D + L M ++ + R E + + F++
Sbjct: 310 ARLTYDDVSDWAEHGKQLDIDAGVLAQLPLMKAMTEARIAWRTEHALVFPDRPDYDFEL- 368
Query: 287 TETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEP- 345
E + L I + R AN+MVEE M+AAN+ + +Q + H +E L+
Sbjct: 369 GENGEVLAIHVEPRRIANRMVEESMIAANICAGRVLGKQVGY-GIFNVHTGFDEESLDGA 427
Query: 346 --LLRTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLIRILATRCMTQAV-YFCSGDL 402
LL++A A +++S + I L TR + + F S L
Sbjct: 428 IDLLKSAEAPFEKEEIASLSGFC-----------ALRRWIDNLDTRWLDGKIRRFQSYAL 476
Query: 403 TPPE-FHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADN 461
E HYGL Y +TSPIR+Y D+V HRLL A + K P +RP L + ++
Sbjct: 477 MSAEPGAHYGLGLDAYATWTSPIRKYGDMVNHRLLKAVIA-GKTPG---ERPSL-ELTEH 531
Query: 462 LNYRHRNAQMASRGSVELHTLIYFRKRPTDT------EARIV---------KIRSNGFIV 506
L R +M R ++ +Y R D A I+ ++R NG +V
Sbjct: 532 LTACRRLHRMVER---DIGDWLYVRYLKADAGTDKVFNAEIIDVMRAGLKLRLRENGAVV 588
Query: 507 FVP 509
F+P
Sbjct: 589 FMP 591
>sp|B7LRZ1|RNB_ESCF3 Exoribonuclease 2 OS=Escherichia fergusonii (strain ATCC 35469 /
DSM 13698 / CDC 0568-73) GN=rnb PE=3 SV=1
Length = 644
Score = 115 bits (289), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 132/470 (28%), Positives = 198/470 (42%), Gaps = 54/470 (11%)
Query: 110 IRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASK 169
+R DL L ++D +D+DDAL+ AL G ++ V IAD T ++ G+ LD+ A
Sbjct: 188 VRQDLTALNFVTIDSASTEDMDDALYAEALPDGKLQLTVAIADPTAWIAEGSKLDNVAKI 247
Query: 170 RGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEII-STRYTKSVIKS 228
R + YL I MLP+ L++D+CSLRA R A + + + I + + I+S
Sbjct: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRAFEVRPALACRMTIAADGTIEDDIEFFAATIES 307
Query: 229 CAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIE---RGALTLASAEVKFQI 285
A L Y E +++S P + L ++ QRR E AL I
Sbjct: 308 KAKLVYDEVSDWLENSGNWQPENDAIAEQIRLLAQICQRRGEWRHNHALVFKDRPDYRFI 367
Query: 286 DTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEP 345
E + LDI R AN++VEE M+AAN+ A ++LR + H +
Sbjct: 368 LGEKGEVLDIVAEPRRIANRIVEEAMIAANICAA-RVLRDKIGFGIYNVHMGFDPANADA 426
Query: 346 LLRTAAAVGLNLDVSSSKALAD--SLDRAVGDDP--YFNKLIRILATRCMTQAVYFCSGD 401
L GL++D L L R + P + + IR Q+ S
Sbjct: 427 LAALLKTHGLHVDAQEVLTLEGFCKLRRELDAQPSGFLDSRIRRF------QSFAEISTQ 480
Query: 402 LTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADN 461
P H+GL Y +TSPIR+Y D++ HRLL A+ + RPQ +
Sbjct: 481 PGP----HFGLGLEAYATWTSPIRKYGDMINHRLLKAA-----IKGETASRPQDETTV-Q 530
Query: 462 LNYRHRNAQMASRGSVELHTLIYFR----KRPTDTE--ARIVKIR---------SNGFIV 506
+ R R +MA R ++ +Y R K TDT A I+ I NG +
Sbjct: 531 MTERRRLNRMAER---DVGDWLYARFLKDKAGTDTRFAAEIIDISRGGMRVRLVDNGAVA 587
Query: 507 FVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNI 556
F+P P R D V Q+ V++ G Y V +++
Sbjct: 588 FIP-----APFLHAVR------DELVCSQENGTVQIKGETVYKVTDVIDV 626
>sp|Q8K9Q5|RNB_BUCAP Exoribonuclease 2 OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=rnb PE=3 SV=1
Length = 646
Score = 115 bits (288), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 107/375 (28%), Positives = 161/375 (42%), Gaps = 38/375 (10%)
Query: 90 VLACLPPLPWSVS--------------SEDLA---NPIRLDLRDLRVFSVDPPGCKDIDD 132
V A P +PW V+ +DL N R DL L ++D KDIDD
Sbjct: 152 VKANNPLIPWWVTLSRHNLERKEPKIEKDDLILKNNSHREDLTHLNFITIDNFNTKDIDD 211
Query: 133 ALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDI 192
AL + +GN + V IAD T+++ G+ LD A+KRG + YL + MLP+ L+EDI
Sbjct: 212 ALFIEEIHNGNLRLIVAIADPTSYIKSGSKLDITAAKRGFTNYLPGFNVPMLPRSLSEDI 271
Query: 193 CSLRADVERLAFSVIWELTPEAEIIST-RYTKSVIKSCAALSYVEAQARMDDSRLMDPLT 251
CSL R + + + I S + + IKS + LSY ++ P T
Sbjct: 272 CSLNPHERRPVLACCITILKDGNICSKINFFLAWIKSKSKLSYDNVSDWIEKKSSWKPET 331
Query: 252 TDLRNM----NSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMV 307
+ N + L + R L S E +FQ +ET D+ + + R A++++
Sbjct: 332 KSIENQILLLHRLCLLRIKWRTSNAVLFQDSLEYRFQF-SETGIVEDVVIEKRRIAHKII 390
Query: 308 EEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD 367
EE M+ AN+S A + + + H E ++ L V L
Sbjct: 391 EESMIIANISAANFLSKNLGF-GIYNTHAGFDPINAENVVSFLNNYNLKFTVKEITTLKG 449
Query: 368 --SLDRAVG--DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSP 423
+L R + D Y N IR Y GD + H+ L Y +TSP
Sbjct: 450 FCNLRRVLNILSDNYINSRIR----------RYQSFGDFSITPSPHFALGLVEYATWTSP 499
Query: 424 IRRYADVVVHRLLSA 438
IR+Y+D++ HRLL +
Sbjct: 500 IRKYSDMINHRLLKS 514
>sp|A8GF49|RNB_SERP5 Exoribonuclease 2 OS=Serratia proteamaculans (strain 568) GN=rnb
PE=3 SV=1
Length = 644
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 129/481 (26%), Positives = 207/481 (43%), Gaps = 47/481 (9%)
Query: 100 SVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHP 159
++S D + P R DL L ++D +D+DDAL G+ ++ + IAD T +V
Sbjct: 179 AISEPDASLP-REDLTALNFVTIDSASTEDMDDALFVQDNGDGSLQLTIAIADPTAYVEQ 237
Query: 160 GTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEII-S 218
G+PLD+ A KR + YL I MLP+ L++++CSLR + R + + + +
Sbjct: 238 GSPLDEIARKRAFTNYLPGFNIPMLPRDLSDNLCSLRPNQRRPVLACRVTIGADGALADD 297
Query: 219 TRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKK---MRQRRIERGALT 275
R+ + I+S A L Y E ++ P + D+ +L K+ +R + AL
Sbjct: 298 IRFFAAEIESKAKLVYDEVSDWLEGIAGWQPPSDDIAQQITLLKRVCDVRNSWRHQHALV 357
Query: 276 LASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRH 335
+ E + L+I Q R AN++VEE M+A+NV A +LR + H
Sbjct: 358 FKDRPDYRFVLGEKGEVLEIVTEQRRTANRIVEECMIASNVCAA-IVLRDRLGFGIYNVH 416
Query: 336 PSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD--SLDRAVGDDPYFNKLIRILATRCMTQ 393
++E + A G+ D L L R + P + L +R
Sbjct: 417 TGFDPLLVEQAVTVLQANGVEADAEKLLTLDGFCELRRHLDSQP-----TQFLDSRIRRS 471
Query: 394 AVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRP 453
Y +++ HYGL Y +TSPIR+Y D+V HRLL A I + P+ ++P
Sbjct: 472 QTY---AEISTTPGPHYGLGLEAYATWTSPIRKYGDMVNHRLLKAI--IAEQPA---EKP 523
Query: 454 QLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTE---ARI---------VKIRS 501
Q + L R R +MA R + Y + + E A I V++
Sbjct: 524 Q-DEVTVQLAERRRLNRMAERDVGDWLYARYLKDKAGTDERFNAEIIDVTRGGLRVRLLD 582
Query: 502 NGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVV 561
NG + F+P P R D V Q+ V++ G + Y Q N+ + +
Sbjct: 583 NGAVAFIP-----APFIHAVR------DEMVCSQETGTVQIKGEVVYR--QGDNLQVTIA 629
Query: 562 E 562
E
Sbjct: 630 E 630
>sp|Q2NST6|RNB_SODGM Exoribonuclease 2 OS=Sodalis glossinidius (strain morsitans) GN=rnb
PE=3 SV=1
Length = 644
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 127/444 (28%), Positives = 200/444 (45%), Gaps = 56/444 (12%)
Query: 95 PPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVT 154
P +P VS ++ P R DL L ++D +D+DDA+H +G + + V IAD T
Sbjct: 175 PTMPEGVSLQE-DGPAREDLTALDFITIDSASTEDMDDAIHLAPAPNGAWVMTVAIADPT 233
Query: 155 NFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEA 214
+V G+PLD+ A +R + YL I MLP+ L++D+CSLRA R A + + P
Sbjct: 234 AWVPAGSPLDNIARERAFTNYLPGFNIPMLPRALSDDLCSLRAHERRPALACRVTVRPNG 293
Query: 215 EII-STRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKM---RQRRIE 270
+ R+ + I+S L+Y +++ P T + + L + R +
Sbjct: 294 TLADDARFFTAWIESKGKLAYDNVSDWLENLGSWQPETEAIADQIRLLHDVCLARSAWRQ 353
Query: 271 RGALTLAS-AEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLC 329
R AL + +F ++ E + DI + R AN+M+EE M+ ANV A ++LR
Sbjct: 354 RHALVFKDRPDYRFVLN-EKGNVDDIVVEPRRIANRMIEEAMITANVCAA-RVLRDGLGY 411
Query: 330 SLLRRHPSPTKEMLEPLLRTAAAVGLN---LDVSSSKALA----DSLDRAVGDDP--YFN 380
L H +PLL A L+ ++V + L +L R + P Y +
Sbjct: 412 GLYNVHHG-----FDPLLVDQAVAILHSHQIEVDPADLLTLEGFCALRRRLDAQPTSYLD 466
Query: 381 KLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASL 440
IR T F P H+GL Y +TSPIR+Y D++ HRLL A +
Sbjct: 467 SRIRRFQT--------FAEVSTVPGP--HFGLGLDAYATWTSPIRKYGDMINHRLLKALI 516
Query: 441 GIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFR----KRPTDTE--A 494
G+ +RP + L R R +MA R ++ +Y R K +D+ A
Sbjct: 517 GVGD-----AERPN-EEVTLRLAERRRQNRMAER---DVGDWLYARFLQPKAGSDSRFAA 567
Query: 495 RI---------VKIRSNGFIVFVP 509
I V++ +NG + F+P
Sbjct: 568 EIIDISRGGMRVRLLNNGAVAFIP 591
>sp|B7N4A3|RNB_ECOLU Exoribonuclease 2 OS=Escherichia coli O17:K52:H18 (strain UMN026 /
ExPEC) GN=rnb PE=3 SV=1
Length = 644
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 133/470 (28%), Positives = 200/470 (42%), Gaps = 54/470 (11%)
Query: 110 IRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASK 169
+R DL L ++D +D+DDAL AL G ++ V IAD T ++ G+ LD A
Sbjct: 188 VREDLTALDFVTIDSASTEDMDDALFAKALPDGKLQLIVAIADPTAWIAEGSKLDKAAKI 247
Query: 170 RGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEII-STRYTKSVIKS 228
R + YL I MLP+ L++D+CSLRA+ R + L+ + I + + + I+S
Sbjct: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIES 307
Query: 229 CAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIE---RGALTLASAEVKFQI 285
A L Y + ++++ P + + L ++ QRR E AL I
Sbjct: 308 KAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFI 367
Query: 286 DTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEP 345
E + LDI R AN++VEE M+AAN+ A ++LR + H +
Sbjct: 368 LGEKGEVLDIVAEPRRIANRIVEEAMIAANICAA-RVLRDKLGFGIYNVHMGFDPANADA 426
Query: 346 LLRTAAAVGLNLDVSSSKALAD--SLDRAVGDDP--YFNKLIRILATRCMTQAVYFCSGD 401
L GL++D L L R + P + + IR Q+ S +
Sbjct: 427 LAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRF------QSFAEISTE 480
Query: 402 LTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADN 461
P H+GL Y +TSPIR+Y D++ HRLL A + RPQ I
Sbjct: 481 PGP----HFGLGLEAYATWTSPIRKYGDMINHRLLKAV-----IKGETATRPQ-DEITVQ 530
Query: 462 LNYRHRNAQMASRGSVELHTLIYFR----KRPTDTE--ARIVKIR---------SNGFIV 506
+ R R +MA R ++ +Y R K TDT A IV I NG I
Sbjct: 531 MAERRRLNRMAER---DVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIA 587
Query: 507 FVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNI 556
F+P P R D V Q+ V++ G +Y V +++
Sbjct: 588 FIP-----APFLHAVR------DELVCSQENGTVQIKGETAYKVTDVIDV 626
>sp|Q8FHT6|RNB_ECOL6 Exoribonuclease 2 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=rnb PE=3 SV=1
Length = 644
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 133/470 (28%), Positives = 200/470 (42%), Gaps = 54/470 (11%)
Query: 110 IRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASK 169
+R DL L ++D +D+DDAL AL G ++ V IAD T ++ G+ LD A
Sbjct: 188 VREDLTALDFVTIDSASTEDMDDALFAKALPDGKLQLIVAIADPTAWIAEGSKLDKAAKI 247
Query: 170 RGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEII-STRYTKSVIKS 228
R + YL I MLP+ L++D+CSLRA+ R + L+ + I + + + I+S
Sbjct: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSTDGTIEDNIEFFAATIES 307
Query: 229 CAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIE---RGALTLASAEVKFQI 285
A L Y + ++++ P + + L ++ QRR E AL I
Sbjct: 308 KAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFI 367
Query: 286 DTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEP 345
E + LDI R AN++VEE M+AAN+ A ++LR + H +
Sbjct: 368 LGEKGEVLDIVAEPRRIANRIVEEAMIAANICAA-RVLRDKLGFGIYNVHMGFDPANADA 426
Query: 346 LLRTAAAVGLNLDVSSSKALAD--SLDRAVGDDP--YFNKLIRILATRCMTQAVYFCSGD 401
L GL++D L L R + P + + IR Q+ S +
Sbjct: 427 LAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRF------QSFAEISTE 480
Query: 402 LTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADN 461
P H+GL Y +TSPIR+Y D++ HRLL A + RPQ I
Sbjct: 481 PGP----HFGLGLEAYATWTSPIRKYGDMINHRLLKAV-----IKGETATRPQ-DEITVQ 530
Query: 462 LNYRHRNAQMASRGSVELHTLIYFR----KRPTDTE--ARIVKIR---------SNGFIV 506
+ R R +MA R ++ +Y R K TDT A IV I NG I
Sbjct: 531 MAERRRLNRMAER---DVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIA 587
Query: 507 FVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNI 556
F+P P R D V Q+ V++ G +Y V +++
Sbjct: 588 FIP-----APFLHAVR------DELVCSQENGTVQIKGETAYKVTDVIDV 626
>sp|Q0TI78|RNB_ECOL5 Exoribonuclease 2 OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=rnb PE=3 SV=1
Length = 644
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 133/470 (28%), Positives = 200/470 (42%), Gaps = 54/470 (11%)
Query: 110 IRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASK 169
+R DL L ++D +D+DDAL AL G ++ V IAD T ++ G+ LD A
Sbjct: 188 VREDLTALDFVTIDSASTEDMDDALFAKALPDGKLQLIVAIADPTAWIAEGSKLDKAAKI 247
Query: 170 RGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEII-STRYTKSVIKS 228
R + YL I MLP+ L++D+CSLRA+ R + L+ + I + + + I+S
Sbjct: 248 RAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSTDGTIEDNIEFFAATIES 307
Query: 229 CAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIE---RGALTLASAEVKFQI 285
A L Y + ++++ P + + L ++ QRR E AL I
Sbjct: 308 KAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFI 367
Query: 286 DTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEP 345
E + LDI R AN++VEE M+AAN+ A ++LR + H +
Sbjct: 368 LGEKGEVLDIVAEPRRIANRIVEEAMIAANICAA-RVLRDKLGFGIYNVHMGFDPANADA 426
Query: 346 LLRTAAAVGLNLDVSSSKALAD--SLDRAVGDDP--YFNKLIRILATRCMTQAVYFCSGD 401
L GL++D L L R + P + + IR Q+ S +
Sbjct: 427 LAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRF------QSFAEISTE 480
Query: 402 LTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADN 461
P H+GL Y +TSPIR+Y D++ HRLL A + RPQ I
Sbjct: 481 PGP----HFGLGLEAYATWTSPIRKYGDMINHRLLKAV-----IKGETATRPQ-DEITVQ 530
Query: 462 LNYRHRNAQMASRGSVELHTLIYFR----KRPTDTE--ARIVKIR---------SNGFIV 506
+ R R +MA R ++ +Y R K TDT A IV I NG I
Sbjct: 531 MAERRRLNRMAER---DVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIA 587
Query: 507 FVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNI 556
F+P P R D V Q+ V++ G +Y V +++
Sbjct: 588 FIP-----APFLHAVR------DELVCSQENGTVQIKGETAYKVTDVIDV 626
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,118,606
Number of Sequences: 539616
Number of extensions: 8820269
Number of successful extensions: 18765
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 18242
Number of HSP's gapped (non-prelim): 170
length of query: 575
length of database: 191,569,459
effective HSP length: 123
effective length of query: 452
effective length of database: 125,196,691
effective search space: 56588904332
effective search space used: 56588904332
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)