Query 008167
Match_columns 575
No_of_seqs 283 out of 1914
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 19:44:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vnu_D Exosome complex exonucl 100.0 3E-128 1E-132 1098.7 62.9 563 7-574 175-759 (760)
2 2wp8_J Exosome complex exonucl 100.0 8E-127 3E-131 1103.2 58.0 563 7-574 392-976 (977)
3 2id0_A Exoribonuclease 2; RNAs 100.0 4E-118 2E-122 999.7 55.9 531 10-575 94-643 (644)
4 2r7d_A Ribonuclease II family 100.0 1.9E-99 6E-104 817.8 43.3 427 51-574 20-460 (469)
5 1luz_A Protein K3, protein K2; 98.8 9.4E-10 3.2E-14 91.2 3.0 74 483-574 5-81 (88)
6 4ayb_E DNA-directed RNA polyme 98.8 8.4E-09 2.9E-13 97.2 8.9 80 490-574 83-164 (180)
7 2ckz_B C25, DNA-directed RNA p 98.8 2.6E-09 8.8E-14 103.4 5.1 81 480-564 72-156 (218)
8 1kl9_A Eukaryotic translation 98.7 2E-08 7E-13 94.3 7.2 77 482-574 5-86 (182)
9 1go3_E DNA-directed RNA polyme 98.7 8.2E-08 2.8E-12 91.0 10.4 80 490-574 83-165 (187)
10 2a19_A EIF-2- alpha, eukaryoti 98.7 2.7E-08 9.1E-13 93.0 6.7 77 482-574 5-86 (175)
11 2k52_A Uncharacterized protein 98.7 6.6E-08 2.3E-12 78.5 8.1 65 490-575 7-71 (80)
12 2c35_B Human RPB7, DNA-directe 98.6 7.6E-08 2.6E-12 90.0 9.4 76 483-564 75-153 (172)
13 3bzc_A TEX; helix-turn-helix, 98.6 1.5E-08 5.2E-13 114.5 4.5 166 340-574 548-723 (785)
14 2k4k_A GSP13, general stress p 98.6 1.1E-07 3.8E-12 84.6 8.2 68 490-574 9-76 (130)
15 3ayh_B DNA-directed RNA polyme 98.5 2.2E-08 7.7E-13 96.0 2.8 79 481-564 73-160 (203)
16 2cqo_A Nucleolar protein of 40 98.5 5E-08 1.7E-12 85.5 4.2 71 490-574 24-94 (119)
17 2khi_A 30S ribosomal protein S 98.5 1.4E-07 4.7E-12 82.2 6.6 69 490-574 32-100 (115)
18 2eqs_A ATP-dependent RNA helic 98.5 1.3E-07 4.5E-12 80.6 5.9 68 490-574 14-83 (103)
19 2b8k_G B16, DNA-directed RNA p 98.4 3.2E-07 1.1E-11 88.5 7.8 73 484-564 78-153 (215)
20 1y14_B B16, RPB7, DNA-directed 98.4 4E-07 1.4E-11 84.9 8.3 75 482-564 76-153 (171)
21 2khj_A 30S ribosomal protein S 98.4 2.9E-07 9.8E-12 79.3 5.5 68 490-574 33-100 (109)
22 3aev_A Translation initiation 98.4 6.5E-07 2.2E-11 89.5 8.5 76 483-574 3-82 (275)
23 1q8k_A Eukaryotic translation 98.3 4.2E-07 1.4E-11 92.1 5.3 77 482-574 3-84 (308)
24 3h0g_G DNA-directed RNA polyme 98.2 4.8E-07 1.7E-11 84.4 3.9 75 482-564 77-154 (172)
25 1wi5_A RRP5 protein homolog; S 98.0 2.7E-06 9.1E-11 74.4 3.7 70 490-574 23-92 (119)
26 3cw2_C Translation initiation 97.9 3.9E-06 1.3E-10 83.6 2.3 69 490-574 13-82 (266)
27 3psi_A Transcription elongatio 97.8 1.7E-05 5.8E-10 93.5 5.8 69 490-574 904-972 (1219)
28 4aid_A Polyribonucleotide nucl 97.7 7.1E-06 2.4E-10 91.9 1.0 67 490-574 639-705 (726)
29 3go5_A Multidomain protein wit 97.7 7E-05 2.4E-09 75.2 7.9 60 490-574 154-214 (285)
30 1e3p_A Guanosine pentaphosphat 97.6 2.9E-06 9.9E-11 95.8 -3.3 137 414-574 596-739 (757)
31 3psf_A Transcription elongatio 97.6 1.1E-05 3.8E-10 93.6 0.0 69 490-574 907-975 (1030)
32 3cdi_A Polynucleotide phosphor 97.5 1.7E-05 5.9E-10 89.2 0.0 67 490-574 629-695 (723)
33 3m7n_A Putative uncharacterize 96.9 0.0014 4.8E-08 61.2 6.6 65 489-574 58-131 (179)
34 2nn6_I 3'-5' exoribonuclease C 96.6 0.0016 5.4E-08 62.3 5.1 71 490-574 83-160 (209)
35 2je6_I RRP4, exosome complex R 95.7 0.0081 2.8E-07 59.0 4.8 70 490-574 76-145 (251)
36 2ba0_A Archeal exosome RNA bin 95.7 0.019 6.4E-07 55.7 7.1 68 490-574 59-126 (229)
37 1hh2_P NUSA, N utilization sub 95.5 0.018 6.2E-07 58.9 6.8 62 490-573 136-197 (344)
38 2z0s_A Probable exosome comple 95.4 0.011 3.8E-07 57.5 4.6 71 490-574 68-138 (235)
39 3go5_A Multidomain protein wit 94.2 0.076 2.6E-06 53.0 7.1 62 490-574 71-134 (285)
40 1k0r_A NUSA; two component arr 94.1 0.063 2.2E-06 55.1 6.2 65 489-573 131-201 (366)
41 2asb_A Transcription elongatio 92.4 0.2 6.8E-06 48.7 6.5 64 489-573 8-78 (251)
42 2ja9_A Exosome complex exonucl 91.2 0.55 1.9E-05 43.2 7.8 66 490-573 9-74 (175)
43 2bh8_A 1B11; transcription, mo 88.1 0.2 7E-06 41.8 2.0 33 490-523 63-95 (101)
44 2bx2_L Ribonuclease E, RNAse E 87.8 0.77 2.6E-05 49.4 6.8 67 490-563 47-116 (517)
45 2rf4_A DNA-directed RNA polyme 87.7 1.2 4E-05 42.4 7.4 80 490-575 131-213 (214)
46 2nn6_H Exosome complex exonucl 85.7 0.43 1.5E-05 48.0 3.2 77 490-574 97-173 (308)
47 2bh8_A 1B11; transcription, mo 64.2 14 0.00047 30.4 6.1 56 490-562 15-73 (101)
48 3i4o_A Translation initiation 59.4 6.2 0.00021 31.2 2.9 63 490-573 14-77 (79)
49 2bti_A Carbon storage regulato 52.8 23 0.0008 26.5 5.0 23 541-563 7-29 (63)
50 3d0f_A Penicillin-binding 1 tr 51.7 23 0.00078 29.2 5.5 58 490-557 35-93 (106)
51 2nn6_G Exosome complex exonucl 48.4 28 0.00096 34.4 6.4 58 490-563 129-186 (289)
52 2jpp_A Translational repressor 47.4 25 0.00087 26.9 4.5 22 542-563 6-27 (70)
53 2dgy_A MGC11102 protein; EIF-1 44.7 36 0.0012 28.6 5.5 63 490-573 15-78 (111)
54 1d7q_A Translation initiation 44.1 34 0.0012 30.0 5.5 63 490-574 31-94 (143)
55 1vpz_A Carbon storage regulato 41.2 36 0.0012 26.2 4.5 23 541-563 17-39 (73)
56 1jjg_A M156R; beta barrel, S1 36.5 30 0.001 27.9 3.5 59 490-563 34-93 (102)
57 1t3o_A Carbon storage regulato 33.1 32 0.0011 27.9 3.2 27 537-563 22-48 (95)
58 3h8z_A FragIle X mental retard 32.3 65 0.0022 27.7 5.3 56 490-559 16-72 (128)
59 1u07_A TONB protein; beta-hair 29.8 62 0.0021 25.4 4.6 22 203-224 26-47 (90)
60 1wfq_A UNR protein; beta-barre 26.7 1.3E+02 0.0046 23.8 6.0 34 490-524 17-51 (89)
61 1c9o_A CSPB, cold-shock protei 26.6 1.8E+02 0.0063 21.4 6.5 51 493-561 3-54 (66)
62 1mhn_A SurviVal motor neuron p 26.3 1.4E+02 0.0047 21.5 5.6 34 490-523 19-54 (59)
63 2k9k_A TONB2; metal transport; 25.2 73 0.0025 25.8 4.3 22 203-224 41-62 (106)
64 3mqp_B Phorbol-12-myristate-13 24.6 22 0.00075 21.0 0.6 13 423-435 10-22 (25)
65 2id0_A Exoribonuclease 2; RNAs 23.5 87 0.003 34.5 5.8 56 7-67 28-84 (644)
66 2ytx_A Cold shock domain-conta 22.6 1.7E+02 0.0059 23.5 6.0 49 490-558 17-66 (97)
67 2jm6_A NOXA; apoptosis, BCL-2, 20.6 29 0.001 20.8 0.6 14 423-436 10-23 (27)
68 1ah9_A IF1, initiation factor 20.2 1.1E+02 0.0036 23.1 4.0 50 491-559 7-57 (71)
No 1
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=100.00 E-value=3e-128 Score=1098.66 Aligned_cols=563 Identities=46% Similarity=0.775 Sum_probs=520.9
Q ss_pred CCCccEEEEEeCCCCCCceEecCCccCcCCCCEEEEEEeecCCCCCCcceEEEEeecCCCChhhHHHHHHhhCCCCCCCC
Q 008167 7 SGSVAHALFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESEMVLIDNDIDARPF 86 (575)
Q Consensus 7 ~~~~~~~~~~P~d~r~p~i~i~~~~~~~~~~~~~~v~i~~w~~~~~~p~g~i~~~lG~~~~~~~~~~~il~~~~i~~~~f 86 (575)
|.+.+++||+|.|+|+|.|.|++++.+...|++|+|+|++||.++.+|.|+|+++||..+++++++++++.+|+|+..+|
T Consensus 175 ~~~~~~~~~~P~d~ri~~i~i~~~~~~~~~g~~vvv~i~~~p~~~~~p~G~i~~~LG~~~d~~~e~~~il~~~~l~~~~F 254 (760)
T 2vnu_D 175 SSSTQNVFVILMDKCLPKVRIRTRRAAELLDKRIVISIDSWPTTHKYPLGHFVRDLGTIESAQAETEALLLEHDVEYRPF 254 (760)
T ss_dssp CCSCEEEEEEESSTTSCCEEEEETTGGGGTTEEEEEEEEECCTTCSSCEEEEEEEEEESSCSHHHHHHHHHHTTCCCSCC
T ss_pred cCccceEEEEECCCCCccEEEecccccccCCCEEEEEEeeccCCCCCCcEEEEEEeCCCCCchhHHHHHHHHCCCCCcCC
Confidence 44567889999999999999999988888899999999999999999999999999999999999999999999998679
Q ss_pred cHHHHhcCCCC--CCCCCc----------c-ccCCCCCccCCCCeEEEECCCCCCCcCceEEEEEecCCcEEEEEEeccc
Q 008167 87 STQVLACLPPL--PWSVSS----------E-DLANPIRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADV 153 (575)
Q Consensus 87 ~~~v~~~~~~~--~~~~~~----------~-~~~~~~R~Dlr~~~~~tID~~~a~D~DDAisi~~~~~g~~~l~VHIADv 153 (575)
|++|++|++.. +|.+++ + +.. +|+|||++++|||||++|+||||||||+++++|+|+||||||||
T Consensus 255 ~~~vl~~~~~~~~~~~i~~~~~~~~~v~~~~~~~--~R~Dlr~l~~~TID~~~a~D~DDAvsie~~~~g~~~l~VHIADV 332 (760)
T 2vnu_D 255 SKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLT--KRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADV 332 (760)
T ss_dssp CHHHHTTSCTTGGGCCCCSSTTCHHHHHHCGGGG--GSEECTTSCCEEEESSSCCCCCEEEEEEECTTSCEEEEEEEECH
T ss_pred CHHHHHHHHhcccccccccccccccccccccchh--cccccccCeEEEEcCCCCCcccceEEEEEcCCCcEEEEEEeccH
Confidence 99999999887 787653 2 444 89999999999999999999999999999999999999999999
Q ss_pred cccccCCCHHHHHHHhCCCceEcCCccccCCChhhhccccCCCCCCeeeEEEEEEEEcCCCcEEEEEEEEEEEeecceeC
Q 008167 154 TNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALS 233 (575)
Q Consensus 154 s~~v~~~s~LD~eA~~R~~SvYlp~~~~pMLP~~Ls~~~cSL~~~~~r~a~s~~~~i~~~G~i~~~~~~~s~I~s~~~lt 233 (575)
|+||+|||+||+||++||||||||++++||||+.||+++|||+||++|+||||.|+||++|+|++++|++|+|+|+++||
T Consensus 333 s~yV~~gs~LD~eA~~RgtSvYlp~rviPMLP~~Ls~~lcSL~p~~dRla~S~~~~id~~G~v~~~~~~~svI~s~~rlt 412 (760)
T 2vnu_D 333 THFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFS 412 (760)
T ss_dssp HHHSCTTSHHHHHHHHHCBCEECSSCEECSSCHHHHTTTSSCCBTSEEEEEEEEEEECTTCCEEEEEEEEEEEEBSEEEE
T ss_pred HHeeCCCCHHHHHHHHcCCcEecCCceEeCCChHHcccccccCCCCcEEEEEEEEEEcCCCCEEEEEEEEEEEEecceEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCccccCcceEEEecCCCCCeeeEEEeecchHHHHHHHHHHH
Q 008167 234 YVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLA 313 (575)
Q Consensus 234 Y~~v~~~l~~~~~~~~~~~~L~~L~~la~~lr~~R~~~Gal~~~~~e~~~~~d~~~~~~~~v~~~~~~~s~~lVeE~Mil 313 (575)
|++|+++|+++....++.++|..|+++|+.|+++|.++|+++|+.||++|.+|++.|.|.++.+.++.+||.|||||||+
T Consensus 413 Y~~v~~~l~~~~~~~~l~~~L~~L~~la~~lr~~R~~~Gai~~~~pe~~~~ld~e~g~~~~i~~~~~~~a~~lIeE~Mll 492 (760)
T 2vnu_D 413 YEQAQLRIDDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEFMLL 492 (760)
T ss_dssp HHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEECSSSSCEEEEEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceEEEEecCCCcEEEEEEcCCccHHHHHHHHHHH
Confidence 99999999987666788899999999999999999999999999999999999666889999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCceeeeeCCCCChhhHHHHHHHHHHc-CCccCCCCHHHHHHHHHHHhC-CChhHHHHHHHHHHhhc
Q 008167 314 ANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAV-GLNLDVSSSKALADSLDRAVG-DDPYFNKLIRILATRCM 391 (575)
Q Consensus 314 AN~~vA~~l~~~~~~~~~~R~h~~P~~~~~~~l~~~~~~~-g~~~~~~~~~~l~~~l~~~~~-~~~~~~~~l~~~~~r~m 391 (575)
||.+||+++.++++.|++||+|+.|+++++++|.+++..+ |+.++..++++++++|+++.+ .++.++.+++.+++|+|
T Consensus 493 AN~~vA~~l~~~~~~~~l~R~h~~P~~~~l~~l~~~~~~~~g~~l~~~~~~~l~~~l~~~~~~~~~~~~~ll~~~~~r~m 572 (760)
T 2vnu_D 493 ANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMSTRCM 572 (760)
T ss_dssp HHHHHHHHHHHHCTTTCEEEEBCCCCGGGGHHHHHHHHHHHSCCCCCSCHHHHHHHHHTCCBTTBTTHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCCCCeeEEecCCCCHHHHHHHHHHHHHccCCCcCCCCHHHHHHHHHHhhCCchHHHHHHHHHHHHHhh
Confidence 9999999999988899999999999999999999999999 999998899999999987655 55677888999999999
Q ss_pred cCceecccCCCCCCCCCccccCCCCccccccccccchhHHHHHHHHHHhCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 008167 392 TQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQM 471 (575)
Q Consensus 392 ~~a~Y~~~~~~~~~~~~H~gL~~~~YthfTSPIRRY~DlvvHr~L~~~l~~~~~~~~~~~~~~l~~~~~~~n~~~~~a~~ 471 (575)
++|+|+++|..+.++.+|||||++.|||||||||||+||+|||||+++|.+++.+....+.+.|..+|.+||.++++|+.
T Consensus 573 ~~A~Y~~~g~~~~~~~~HfgLa~~~YtHfTSPIRRY~DLivHR~L~~~l~~~~~~~~~~~~~~l~~~~~~~s~~er~A~~ 652 (760)
T 2vnu_D 573 MAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQF 652 (760)
T ss_dssp CCCEEEEGGGSCGGGGCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHTTSSCCCGGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCccccccCcCCCCCCCceecCCCceeccCchHhhhHHHHHHHHHHHHHccCCCcccccCHHHHHHHHHHhhHHHHHHHH
Confidence 99999999988889999999999999999999999999999999999998765554445667899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCceeEEEEEEEecCeEEEEEcCCceEEEEEccCCC--CCCCCcceecCCcEEEEeeCC----C
Q 008167 472 ASRGSVELHTLIYFRKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRG--QKGSGDWYVDEQQQKIVKMDG----N 545 (575)
Q Consensus 472 a~r~~~~~~~~~~l~~~~~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~--~d~~~~~~~d~~~~~l~g~~~----~ 545 (575)
|+|++.++|+|.||+++++.++|+|++|.++|++|.||++|+||+||++++. ++| |.||+.+++++|+++ +
T Consensus 653 aer~~~~~~~~~~l~~~~~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~---~~fd~~~~~l~g~~~~~~~~ 729 (760)
T 2vnu_D 653 AGRASIEYYVGQVMRNNESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNS---AAFDEVEYKLTFVPTNSDKP 729 (760)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGG---CEEETTTTEEEECCTTCSSC
T ss_pred HHHHHHHHHHHHHhhcCceEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCce---eEEcccccEEEEecCCCccC
Confidence 9999999999999999888999999999999999999999999999999996 665 899999999998775 6
Q ss_pred eEEeeCcEEEEEEEEecCCCC-CCceEEEe
Q 008167 546 LSYSVLQTVNIHMEVVEPQPN-RPKLQLTL 574 (575)
Q Consensus 546 ~~~~lGD~V~V~V~~vd~~~~-~~~i~l~l 574 (575)
++|++||+|+|+|.+++.+.+ ++||.|+|
T Consensus 730 ~~~~lGD~V~VkV~~vd~~~~~~~kI~lsl 759 (760)
T 2vnu_D 730 RDVYVFDKVEVQVRSVMDPITSKRKAELLL 759 (760)
T ss_dssp EEEETTCEEEEEEC--------CCEEEC--
T ss_pred cEEecCCEEEEEEEEEECccccCCcEEEEe
Confidence 999999999999999997532 48999987
No 2
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-127 Score=1103.21 Aligned_cols=563 Identities=46% Similarity=0.774 Sum_probs=527.4
Q ss_pred CCCccEEEEEeCCCCCCceEecCCccCcCCCCEEEEEEeecCCCCCCcceEEEEeecCCCChhhHHHHHHhhCCCCCCCC
Q 008167 7 SGSVAHALFVPKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGDRDTESEMVLIDNDIDARPF 86 (575)
Q Consensus 7 ~~~~~~~~~~P~d~r~p~i~i~~~~~~~~~~~~~~v~i~~w~~~~~~p~g~i~~~lG~~~~~~~~~~~il~~~~i~~~~f 86 (575)
|.+.+++||+|.|+|+|.|.|++++.+...|++|+|+|++||.++.+|.|+|+++||..+++++++++++.+|||+..+|
T Consensus 392 g~~~~~~~~~P~D~ri~~i~I~~~~~~~~~g~~vvv~I~~wp~~~~~p~G~iv~~LG~~~d~~~e~~~il~~~~l~~~~F 471 (977)
T 2wp8_J 392 SSSTQNVFVILMDKCLPKVRIRTRRAAELLDKRIVISIDSWPTTHKYPLGHFVRDLGTIESAQAETEALLLEHDVEYRPF 471 (977)
T ss_dssp CCSCEEEEEEESSTTSCCEEEEETTTTGGGGEEEEEEEEECCTTCSSCEEEEEEEEEESSCSHHHHHHHHHHTTCCCSCC
T ss_pred CCccceEEEEECCCCCccEEeccccccccCCCEEEEEEeeccCCCCCccEEEEEEeCCCCCcchhHHHHHHHcCCCcccC
Confidence 34557789999999999999999988888899999999999999999999999999999999999999999999998779
Q ss_pred cHHHHhcCCCC--CCCCC----------cc-ccCCCCCccCCCCeEEEECCCCCCCcCceEEEEEecCCcEEEEEEeccc
Q 008167 87 STQVLACLPPL--PWSVS----------SE-DLANPIRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADV 153 (575)
Q Consensus 87 ~~~v~~~~~~~--~~~~~----------~~-~~~~~~R~Dlr~~~~~tID~~~a~D~DDAisi~~~~~g~~~l~VHIADv 153 (575)
|++|+++++.. +|.++ ++ +.. +|+|||++++|||||++|+||||||||+++++|+|+||||||||
T Consensus 472 p~~vl~~~~~~~~~~~i~~~~~~~~~v~~~~~~~--~R~Dlr~l~~~TID~~~akDlDDAvsie~~~~G~~~lgVHIADV 549 (977)
T 2wp8_J 472 SKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLT--KRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADV 549 (977)
T ss_dssp CHHHHTTSCTTGGGCCCCSSTTCHHHHHHCGGGG--GCEECTTSCCEEEECTTCSCCCEEEEEEECTTSCEEEEEEEECH
T ss_pred CHHHHHHHHhcccccccccccccccccccccccc--cceecccCcEEEECCCCCCcccceEEEEEcCCCcEEEEEEeccH
Confidence 99999999988 78765 22 444 89999999999999999999999999999999999999999999
Q ss_pred cccccCCCHHHHHHHhCCCceEcCCccccCCChhhhccccCCCCCCeeeEEEEEEEEcCCCcEEEEEEEEEEEeecceeC
Q 008167 154 TNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALS 233 (575)
Q Consensus 154 s~~v~~~s~LD~eA~~R~~SvYlp~~~~pMLP~~Ls~~~cSL~~~~~r~a~s~~~~i~~~G~i~~~~~~~s~I~s~~~lt 233 (575)
|+||+|||+||+||++||||||||++++||||+.||+++|||+||++|+||||.|+||++|+|++++|++|+|+|+++||
T Consensus 550 s~yV~~gS~LD~eA~~RgtSvYLpdrviPMLP~~LS~~lcSL~pg~dRla~Sv~~~id~~G~i~~~~~~~svIrs~~rlt 629 (977)
T 2wp8_J 550 THFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFS 629 (977)
T ss_dssp HHHSCSSSHHHHHHHHHCBCEEETTEEECSSCHHHHTTTSSCCBTSEEEEEEEEEEECTTSCEEEEEEEEEEEEBSEEEE
T ss_pred HHeeCCCCHHHHHHHHcCCcEeCCCceEeCCChHHhccccccCCCCceEEEEEEEEECCCCCEEEEEEEEEEEEecceEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCccccCcceEEEecCCCCCeeeEEEeecchHHHHHHHHHHH
Q 008167 234 YVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLA 313 (575)
Q Consensus 234 Y~~v~~~l~~~~~~~~~~~~L~~L~~la~~lr~~R~~~Gal~~~~~e~~~~~d~~~~~~~~v~~~~~~~s~~lVeE~Mil 313 (575)
|++|+++|+++....++.++|..|+++|+.|+++|.++|+++|+.||.+|.+|++.|.|.++.+.++.+||.|||||||+
T Consensus 630 Y~~v~~~l~~~~~~~~l~~~L~~L~~la~~Lr~~R~~~Gai~~~~pE~~~~ld~e~g~~~~i~~~~~~~a~~LIEE~Mll 709 (977)
T 2wp8_J 630 YEQAQLRIDDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEFMLL 709 (977)
T ss_dssp HHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSHHHHTTSCCTTCCCCCSSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceEEEeccCCCceEEEEecCCCcHHHHHHHHHHH
Confidence 99999999987666788899999999999999999999999999999999999556789988888999999999999999
Q ss_pred HHHHHHHHHHHhCCCceeeeeCCCCChhhHHHHHHHHHHc-CCccCCCCHHHHHHHHHHHhC-CChhHHHHHHHHHHhhc
Q 008167 314 ANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAV-GLNLDVSSSKALADSLDRAVG-DDPYFNKLIRILATRCM 391 (575)
Q Consensus 314 AN~~vA~~l~~~~~~~~~~R~h~~P~~~~~~~l~~~~~~~-g~~~~~~~~~~l~~~l~~~~~-~~~~~~~~l~~~~~r~m 391 (575)
||++||+++.++++.|++||+|+.|++++++.|.++++.+ |+.++..++++++++|+++.+ .++.++.+++.+++|+|
T Consensus 710 AN~~vA~~l~~~~~~~~lyR~h~~P~~~kl~~l~~~~~~~~G~~l~~~~~~~l~~~L~~~~~~~~~~~~~ll~~~~lrsm 789 (977)
T 2wp8_J 710 ANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMSTRCM 789 (977)
T ss_dssp HHHHHHHHHHHHCTTTCEEEEBCCCCGGGGHHHHHHHHHHHSCCCCCSSHHHHHHHHHHCCCSSCTTHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHhhCCchHHHHHHHHHHHHHhc
Confidence 9999999999988899999999999999999999999999 999998899999999998766 56777888999999999
Q ss_pred cCceecccCCCCCCCCCccccCCCCccccccccccchhHHHHHHHHHHhCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 008167 392 TQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQM 471 (575)
Q Consensus 392 ~~a~Y~~~~~~~~~~~~H~gL~~~~YthfTSPIRRY~DlvvHr~L~~~l~~~~~~~~~~~~~~l~~~~~~~n~~~~~a~~ 471 (575)
++|+|+++|..++++.+|||||++.|||||||||||+||+|||||+++|.+++.+....+.+.|..+|.+||.++++|+.
T Consensus 790 ~~A~Y~~sg~~s~~~~gHfgLa~~~YtHfTSPIRRY~DLivHR~L~a~L~~~~~~~~~~~~~~l~~i~~~~s~~er~A~~ 869 (977)
T 2wp8_J 790 MAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQF 869 (977)
T ss_dssp CCCEEEEGGGSCGGGSCBTTTTBSSCCCCSCTTTBHHHHHHHHHHHHHTTSSCCCGGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceeecccccCCCCCCceecCCCCeeccCchHhhHHHHHHHHHHHHHhcCCCCcccccCHHHHHHHHHHhCHHHHHHHH
Confidence 99999999988889999999999999999999999999999999999998776544445678899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCceeEEEEEEEecCeEEEEEcCCceEEEEEccCCC--CCCCCcceecCCcEEEEeeC----CC
Q 008167 472 ASRGSVELHTLIYFRKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRG--QKGSGDWYVDEQQQKIVKMD----GN 545 (575)
Q Consensus 472 a~r~~~~~~~~~~l~~~~~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~--~d~~~~~~~d~~~~~l~g~~----~~ 545 (575)
|+|++.++|++.||+.+.+.++|+|++|.++|++|.||++|+||+||++++. ++| |.||+.+++++|++ .+
T Consensus 870 aeR~~~~~~~~~~l~~~ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~---y~fde~~~~L~g~~~~g~~~ 946 (977)
T 2wp8_J 870 AGRASIEYYVGQVMRNNESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNS---AAFDEVEYKLTFVPTNSDKP 946 (977)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGG---CEEETTTTEEEECCTTCCSC
T ss_pred HHHHHHHHHHhhhhcccceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCce---eEEcccccEEEeecCCCccC
Confidence 9999999999999998878999999999999999999999999999999997 665 89999999999986 36
Q ss_pred eEEeeCcEEEEEEEEecCCCC-CCceEEEe
Q 008167 546 LSYSVLQTVNIHMEVVEPQPN-RPKLQLTL 574 (575)
Q Consensus 546 ~~~~lGD~V~V~V~~vd~~~~-~~~i~l~l 574 (575)
++|++||+|+|+|.+++.+.. ++||.|+|
T Consensus 947 ~~~~lGD~V~VkV~~vd~~~~~~~kI~Lsl 976 (977)
T 2wp8_J 947 RDVYVFDKVEVQVRSVMDPITSKRKAELLL 976 (977)
T ss_dssp EEEETTCEEEEEECCCCCSSSCCCCCCEEE
T ss_pred cEEccCCEEEEEEEEEcCcccCCCceEEEe
Confidence 999999999999999987544 48999987
No 3
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=100.00 E-value=4.5e-118 Score=999.67 Aligned_cols=531 Identities=21% Similarity=0.274 Sum_probs=476.0
Q ss_pred ccEEEEEeCCCCCCceEecCCccCc-----CCCCEEEEEEeecCCCCCCc-ceEEEEeecCCCChhhHHHHHHhhCCCCC
Q 008167 10 VAHALFVPKDRRIPKIRIQTRQLGN-----LLDKRIIVAVDSWDCQSRYP-FGHYVRVIGEIGDRDTESEMVLIDNDIDA 83 (575)
Q Consensus 10 ~~~~~~~P~d~r~p~i~i~~~~~~~-----~~~~~~~v~i~~w~~~~~~p-~g~i~~~lG~~~~~~~~~~~il~~~~i~~ 83 (575)
+..++++|.|++++. .|+.++... ..|++|+|+|++||.++.+| .|+|+++||..+++++++.++|.+|||+.
T Consensus 94 ~~~~~v~pdd~~~~~-~i~~~~~~~~~~~~~~g~~v~v~i~~~p~~~~~p~~g~i~~~LG~~~d~~~e~~~~l~~~~l~~ 172 (644)
T 2id0_A 94 NDRLAIVPDHPLLKD-AIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEK 172 (644)
T ss_dssp TTEEEEEESSTTCCS-CEECCBCSSCCCCCCSSCEEEEEEEECGGGTCSSCEEEEEEEEECTTCTTHHHHHHHHHTTCCC
T ss_pred CCEEEEEECCCCccc-cccccccccccccCCCCCEEEEEEecCcCCCCCCceEEEEEEeCCCCCccchHHHHHHHcCCCC
Confidence 346789999999988 888776654 37999999999999999899 99999999999999999999999999998
Q ss_pred CCCcHHHHhcCCCCCCCCCccccCCCCCccCCCCeEEEECCCCCCCcCceEEEEEecCCcEEEEEEeccccccccCCCHH
Q 008167 84 RPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDLRVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPL 163 (575)
Q Consensus 84 ~~f~~~v~~~~~~~~~~~~~~~~~~~~R~Dlr~~~~~tID~~~a~D~DDAisi~~~~~g~~~l~VHIADvs~~v~~~s~L 163 (575)
.||+++.++ +++ +.. +|+|||++++|||||++|+|+||||||+++++|+|+|||||||||+||+|||+|
T Consensus 173 -~fp~~~~~~-------~~~-~~~--~R~Dlr~l~~~TID~~~a~D~DDAvsie~~~~g~~~l~VHIADVs~yV~~gs~L 241 (644)
T 2id0_A 173 -EAPDGVATE-------MLD-EGL--VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKL 241 (644)
T ss_dssp -SCCCCCCCC-------CCC-SCC--CCCCCCSSCCBEEECSSCSCCCEEEEECCCSSSCEEEEEEEECGGGTCCTTSHH
T ss_pred -CCChHHhhc-------CCc-ccc--cceeccCCcEEEEcCCCCCcccceEEEEEcCCCCEEEEEEeccHHHeeCCCCHH
Confidence 588765433 222 223 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCceEcCCccccCCChhhhccccCCCCCCeeeEEEEEEEEcCCCcEEE-EEEEEEEEeecceeCHHHHHHHhc
Q 008167 164 DDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIIS-TRYTKSVIKSCAALSYVEAQARMD 242 (575)
Q Consensus 164 D~eA~~R~~SvYlp~~~~pMLP~~Ls~~~cSL~~~~~r~a~s~~~~i~~~G~i~~-~~~~~s~I~s~~~ltY~~v~~~l~ 242 (575)
|+||++||||||||++++||||+.||+++|||+||++|+||||.|+||++|+|++ ++|++|+|+|+++|||++|+++|+
T Consensus 242 D~eA~~RgtSvYlp~~~iPMLP~~Ls~~lcSL~p~~dR~a~s~~~~id~~G~v~~~~~~~~svI~s~~rltY~~v~~~l~ 321 (644)
T 2id0_A 242 DKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLE 321 (644)
T ss_dssp HHHHHHHCBCEEETTEEECSSCHHHHTTTSSCCSSCEEEEEEEEEEECSSCCCSTTCCEEEEEEECCCEEEHHHHHHHTT
T ss_pred HHHHHHhCCcEeCCCEEEeCCCHHHhcCcccCCCCCceEEEEEEEEEeCCCCEeeccEEEEEEEEeccccCHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999998 999999999999999999999998
Q ss_pred CCCC----CCchHHHHHHHHHHHHHHHHHHHhcCCccccCcceEEEecCCCCCeeeEEEeecchHHHHHHHHHHHHHHHH
Q 008167 243 DSRL----MDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSV 318 (575)
Q Consensus 243 ~~~~----~~~~~~~L~~L~~la~~lr~~R~~~Gal~~~~~e~~~~~d~~~~~~~~v~~~~~~~s~~lVeE~MilAN~~v 318 (575)
++.. ..++.++|..|+++|+.|+++|.++|+++|+.||.+|.+|++ |.|.++.+.++++||.|||||||+||++|
T Consensus 322 ~~~~~~~~~~~~~~~L~~L~~la~~lr~~R~~~Gai~~~~pe~~~~ld~~-g~~~~i~~~~~~~a~~lIeE~MllAN~~v 400 (644)
T 2id0_A 322 NTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEK-GEVLDIVAEPRRIANRIVEEAMIAANICA 400 (644)
T ss_dssp CCSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCEEEEECTT-SCEEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCceEEEECCC-CCEEEEEEecCCcHHHHHHHHHHHHHHHH
Confidence 6531 235778999999999999999999999999999999999865 78999999999999999999999999999
Q ss_pred HHHHHHhCCCceeeeeCCCCChhhHHHHHHHHHHcCCccCCC---CHHHHHHHHHHHhCCChhHHHHHHHHHHhhccCce
Q 008167 319 AEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVS---SSKALADSLDRAVGDDPYFNKLIRILATRCMTQAV 395 (575)
Q Consensus 319 A~~l~~~~~~~~~~R~h~~P~~~~~~~l~~~~~~~g~~~~~~---~~~~l~~~l~~~~~~~~~~~~~l~~~~~r~m~~a~ 395 (575)
|+++.++ ..|++||+|+.|+++++++|.++++.+|+.++.. ++..+++.++.+.+... . +++.+++|+|++|.
T Consensus 401 A~~l~~~-~~~~lyR~h~~p~~~~l~~l~~~~~~~g~~l~~~~~~~~~~~~~l~~~~~~~~~--~-~l~~~l~r~~~~a~ 476 (644)
T 2id0_A 401 ARVLRDK-LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPT--G-FLDSRIRRFQSFAE 476 (644)
T ss_dssp HHHHHHH-TSCCCEEEBCCBCTTTHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHTSSS--S-HHHHHHTTSBCCCE
T ss_pred HHHHHHc-CCCceeecCCCCCHHHHHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHhcCChH--H-HHHHHHHHhccccc
Confidence 9999998 5799999999999999999999999999988643 34556666666655221 1 56778899999999
Q ss_pred ecccCCCCCCCCCccccCCCCccccccccccchhHHHHHHHHHHhCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008167 396 YFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRG 475 (575)
Q Consensus 396 Y~~~~~~~~~~~~H~gL~~~~YthfTSPIRRY~DlvvHr~L~~~l~~~~~~~~~~~~~~l~~~~~~~n~~~~~a~~a~r~ 475 (575)
| ++++.+|||||++.|||||||||||+||+|||||+++|.+++.+. ..+.+|.+||.++++|+.|+|+
T Consensus 477 y------s~~~~~HfgLa~~~YthfTSPIRRY~DLivHR~l~a~l~~~~~~~------~~~~~~~~~s~~er~a~~aer~ 544 (644)
T 2id0_A 477 I------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATR------PQDEITVQMAERRRLNRMAERD 544 (644)
T ss_dssp E------ESSCCCBTTTTBSSCBCCSCTTTBHHHHHHHHHHHHHTTC----C------CCTTHHHHHHHHHHHHHHHHHH
T ss_pred c------cCCCCCchhcCCCceeeeCChhhcchHHHHHHHHHHHHcCCCCCc------cHHHHHHHHHHHHHHHHHHHHH
Confidence 9 678899999999999999999999999999999999998764331 1246788999999999999999
Q ss_pred HHHHHHHHHHhcCC-c--eeEEEEEEEecCeEEEEEcCCceEEEEEccCCCC--CCCCcceecCCcEEEEeeCCCeEEee
Q 008167 476 SVELHTLIYFRKRP-T--DTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQ--KGSGDWYVDEQQQKIVKMDGNLSYSV 550 (575)
Q Consensus 476 ~~~~~~~~~l~~~~-~--~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~--d~~~~~~~d~~~~~l~g~~~~~~~~l 550 (575)
+.++|+|.||+.++ + +|+|+|++|+++|+||.|+++|++|+||++.+++ +| |.||+...+++. +++..|++
T Consensus 545 ~~~~~~~~~l~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~---~~~d~~~~~l~~-~~~~~~~l 620 (644)
T 2id0_A 545 VGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE---LVCSQENGTVQI-KGETVYKV 620 (644)
T ss_dssp HHHHHHHHHHGGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGG---EEEETTTTEEEE-TTEEEEET
T ss_pred HHHHHHHHHhhhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCce---eEEcccccEEEe-cCCCEeCC
Confidence 99999999999887 5 8999999999999999999999999999999984 55 899988888754 77889999
Q ss_pred CcEEEEEEEEecCCCCCCceEEEeC
Q 008167 551 LQTVNIHMEVVEPQPNRPKLQLTLI 575 (575)
Q Consensus 551 GD~V~V~V~~vd~~~~~~~i~l~l~ 575 (575)
||+|+|+|.++|.+ +++|.|+|+
T Consensus 621 GD~V~VkV~~vd~~--~~~I~~~l~ 643 (644)
T 2id0_A 621 TDVIDVTIAEVRME--TRSIIARPV 643 (644)
T ss_dssp TCEEEEEEEEEETT--TTEEEEEEC
T ss_pred CCEEEEEEEEEeCC--CCEEEEEEc
Confidence 99999999999976 899999985
No 4
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=100.00 E-value=1.9e-99 Score=817.76 Aligned_cols=427 Identities=25% Similarity=0.314 Sum_probs=374.2
Q ss_pred CCCcceEEEEeecCCCChhhHHHH-------------HHhhCCCCCCCCcHHHHhcCCCCCCCCCccccCCCCCccCCCC
Q 008167 51 SRYPFGHYVRVIGEIGDRDTESEM-------------VLIDNDIDARPFSTQVLACLPPLPWSVSSEDLANPIRLDLRDL 117 (575)
Q Consensus 51 ~~~p~g~i~~~lG~~~~~~~~~~~-------------il~~~~i~~~~f~~~v~~~~~~~~~~~~~~~~~~~~R~Dlr~~ 117 (575)
+..|.|+|+++||..++++.+.+. ++.+|+++. .|| +++ .. +.+.. .+|+|||++
T Consensus 20 ~~~~~g~i~~~LG~~~~~~~~~~lL~~~G~~~~~~~~~~~~~~lp~-~fp-----~l~---~~--~~~~~-~~R~Dlr~l 87 (469)
T 2r7d_A 20 GRADKSRVLRDLKLPETPEAAHALLLRLGVWDEARTPYADRLRAAL-NAV-----ELP---VP--DFDPA-EERLDLTHL 87 (469)
T ss_dssp TSCSCCHHHHHTTCCCSHHHHHHHHHHHTSSCTTCCCHHHHTTCCC-SCC-----CCC---CC--CCCTT-SCCEECTTS
T ss_pred CCCcceeEeeecCCCCChhhHHHHHHhcCCCCchhhHHHHHcCCCC-CCc-----ccC---CC--Ccccc-cCceecccC
Confidence 467999999999999999999865 455789988 588 121 11 22220 279999999
Q ss_pred eEEEECCCCCCCcCceEEEEEecCCcEEEEEEeccccccccCCCHHHHHHHhCCCceEcCCccccCCChhhhccccCCCC
Q 008167 118 RVFSVDPPGCKDIDDALHCTALSSGNFEVGVHIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 197 (575)
Q Consensus 118 ~~~tID~~~a~D~DDAisi~~~~~g~~~l~VHIADvs~~v~~~s~LD~eA~~R~~SvYlp~~~~pMLP~~Ls~~~cSL~~ 197 (575)
++|||||++|+|+||||||+++++|+|+|||||||||+||+|||+||+||++||||||||++++||||+.| +++|||+|
T Consensus 88 ~~~TID~~~a~D~DDAvsve~~~~g~~~l~VHIADVs~~V~~gs~LD~eA~~RgtSvYlp~~~ipMLP~~L-~~~cSL~p 166 (469)
T 2r7d_A 88 PTFAIDDEGNQDPDDAVGVEDLGGGLTRLWVHVADVAALVAPDSPLDLEARARGATLYLPDRTIGMLPDEL-VAKAGLGL 166 (469)
T ss_dssp CEEEEECTTCCCCCEEEEEEECSTTCEEEEEEEECGGGTCCTTSHHHHHHHHHCBCEECSSCEECSSCHHH-HHHHSTTS
T ss_pred CEEEEcCCCCCCccceEEEEEeCCCCEEEEEEeccHhheeCCCCHHHHHHHHhCceEecCCceEcCCChHH-hcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred CCeeeEEEEEEEEcCCCcEEEEEEEEEEEeecceeCHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 008167 198 DVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLA 277 (575)
Q Consensus 198 ~~~r~a~s~~~~i~~~G~i~~~~~~~s~I~s~~~ltY~~v~~~l~~~~~~~~~~~~L~~L~~la~~lr~~R~~~Gal~~~ 277 (575)
|++|+||||.|+||++|+|++++|++|+|+|+ +|||++|+++|+++ .++|..|+++|+.|+++|.++|+++|+
T Consensus 167 g~dr~als~~~~id~~G~i~~~~~~~svI~s~-rltY~~v~~~l~~~------~~~L~~L~~la~~lr~~R~~~Gai~~~ 239 (469)
T 2r7d_A 167 HEVSPALSICLDLDPDGNAEAVDVLLTRVKVQ-RLAYQEAQARLEAG------EEPFVTLARLARASRRLREGEGALSID 239 (469)
T ss_dssp SSSEEEEEEEEEECTTSCEEEEEEEEEEECEE-EEEHHHHHHHHHTT------CTTHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCceEEEEEEEEEcCCCCEeeeEEEEEEEEec-cccHHHHHHHHhCC------cHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 99999999999999999999999999999999 99999999999875 146999999999999999999999999
Q ss_pred CcceEEEecCCCCCeeeEEEeecchHHHHHHHHHHHHHHHHHHHHHHhCCCceeeeeCCCCChhhHHHHHHHHHHcCCcc
Q 008167 278 SAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNL 357 (575)
Q Consensus 278 ~~e~~~~~d~~~~~~~~v~~~~~~~s~~lVeE~MilAN~~vA~~l~~~~~~~~~~R~h~~P~~~~~~~l~~~~~~~g~~~ 357 (575)
.||.+|.+|++ +..+...++++|+.|||||||+||++||+++.++ +.|++||+|+.|+.+++
T Consensus 240 ~pe~~i~~d~~---~~~i~~~~~~~a~~lIeE~MilAN~~vA~~l~~~-~ip~~yR~h~~p~~~~~-------------- 301 (469)
T 2r7d_A 240 LPEVRVKADET---GASVFPLPKPEMRTVVQECMTLAGWGTAIFADDN-EIPLPFATQDYPTREVA-------------- 301 (469)
T ss_dssp CCCEEEEEETT---EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCEEEECCCSSCCC--------------
T ss_pred CCceEEEECCC---cceEEecCCCcHHHHHHHHHHHHHHHHHHHHHHc-CCCeeEeeCCCCCcccC--------------
Confidence 99999999864 7788888999999999999999999999999987 88999999999987653
Q ss_pred CCCCHHHHHHHHHHHhCCChhHHHHHHHHHHhhccCceecccCCCCCCCCCccccCCCCccccccccccchhHHHHHHHH
Q 008167 358 DVSSSKALADSLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLS 437 (575)
Q Consensus 358 ~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~r~m~~a~Y~~~~~~~~~~~~H~gL~~~~YthfTSPIRRY~DlvvHr~L~ 437 (575)
. ... +++.+++|+|++|.| +..|.+|||||++.|||||||||||+||+|||||+
T Consensus 302 ~----------------~~~----~~~~~l~r~m~~a~y------~~~~~~HfgL~~~~YthfTSPIRRY~DLivHr~L~ 355 (469)
T 2r7d_A 302 G----------------DTL----PAMWARRKTLARTRF------QPSPGPHHGMGLDLYAQATSPMRRYLDLVVHQQLR 355 (469)
T ss_dssp C----------------CSH----HHHHHHHHHCCCEEE------ESSCCCBTTTTBSCCCCCSCTTTBHHHHHHHHHHH
T ss_pred c----------------chH----HHHHHHHHhcccccc------cCCCCCchhhCccceeeECCcccccHHHHHHHHHH
Confidence 0 011 244567899999999 45689999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ceeEEEEEEEecCeEEEEEcCCceEEE
Q 008167 438 ASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRP-TDTEARIVKIRSNGFIVFVPKFGIEGP 516 (575)
Q Consensus 438 ~~l~~~~~~~~~~~~~~l~~~~~~~n~~~~~a~~a~r~~~~~~~~~~l~~~~-~~~~g~V~~v~~~g~~V~l~~~gleg~ 516 (575)
++|.+++ + ++.++|+.+|.+||.+++.|++|||++.++|++.||+++. ++|+|+|+.+...+..|.++++|.+
T Consensus 356 a~l~~~~-~---~~~~~l~~~~~~~~~~er~a~~aer~~~~~~~~~~l~~~~g~~f~g~vv~l~~~~glV~v~~l~~d-- 429 (469)
T 2r7d_A 356 AFLAGRD-P---LSSKVMAAHIAESQMNADATRQAERLSRRHHTLRFIAAQPERVWDAVVVDRRGAQATLLIPDLAFD-- 429 (469)
T ss_dssp HHHTTCC-C---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEETTEEEEEEGGGTEE--
T ss_pred HHHcCCC-C---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEEeCcEEEEEECCCCeE--
Confidence 9998762 2 3467899999999999999999999999999999999876 7899999876544444444444433
Q ss_pred EEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCCCceEEEe
Q 008167 517 VYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPKLQLTL 574 (575)
Q Consensus 517 v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~~~i~l~l 574 (575)
. +.++.|++||+|+|+|.+||.. +++|.|++
T Consensus 430 --------------------~-----~~~~~~~lGd~V~V~v~~vd~~--~~~i~f~~ 460 (469)
T 2r7d_A 430 --------------------V-----QVNTPAAPGTALQVQFADIDLP--QMRVRARS 460 (469)
T ss_dssp --------------------E-----EEECCCCTTCEEEEEEEEEETT--TTEEEEEE
T ss_pred --------------------E-----ecCCcCCCCCEEEEEEEEEccC--CCEEEEEE
Confidence 0 1135799999999999999976 89999976
No 5
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=98.85 E-value=9.4e-10 Score=91.17 Aligned_cols=74 Identities=9% Similarity=0.110 Sum_probs=60.6
Q ss_pred HHHhcCC-ceeEEEEEEEecCeEEEEEcCC-ceEEEEEcc-CCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEE
Q 008167 483 IYFRKRP-TDTEARIVKIRSNGFIVFVPKF-GIEGPVYLT-PRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHME 559 (575)
Q Consensus 483 ~~l~~~~-~~~~g~V~~v~~~g~~V~l~~~-gleg~v~~~-~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~ 559 (575)
.|+..+. +.++|+|+ +.++|+||.|+++ |++|+||++ ++++++ +.+. ...+ +||+|+|+|.
T Consensus 5 ~y~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~---~~~~-----------~~~~-~Gd~V~VkV~ 68 (88)
T 1luz_A 5 CYSLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDR---YVEY-----------RDKL-VGKTVKVKVI 68 (88)
T ss_dssp CSCCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHH---HHHH-----------HHHH-TTCEEEEEEE
T ss_pred EecCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCccc---ccCH-----------hHEe-CCCEEEEEEE
Confidence 3555554 78999999 9999999999886 899999999 997653 3322 2456 9999999999
Q ss_pred EecCCCCCCceEEEe
Q 008167 560 VVEPQPNRPKLQLTL 574 (575)
Q Consensus 560 ~vd~~~~~~~i~l~l 574 (575)
++|.+ ++||+|++
T Consensus 69 ~vd~~--~~kI~lsl 81 (88)
T 1luz_A 69 RVDYT--KGYIDVNY 81 (88)
T ss_dssp EEETT--TTEEEEEE
T ss_pred EEECC--CCEEEEEE
Confidence 99976 89999986
No 6
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.82 E-value=8.4e-09 Score=97.25 Aligned_cols=80 Identities=15% Similarity=0.188 Sum_probs=69.8
Q ss_pred ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCC--CC
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQP--NR 567 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~--~~ 567 (575)
+.++|+|++++++|+||.+. +++|++|.+++.+++ |.||+....+.|++++..|++||+|+|+|.+++.+. ..
T Consensus 83 ev~~G~V~~v~~~G~fv~l~--~~~glvh~s~l~~d~---~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~~~ 157 (180)
T 4ayb_E 83 EVVEGEVLQVDNYGVFVNLG--PMDGLVHISQITDDT---LKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGRL 157 (180)
T ss_dssp CEEEEEEEEEETTEEEEECS--SSEEEEEGGGSCSSC---EEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC------
T ss_pred CEEEEEEeeeccceEEEEEC--CccceEEeeecCCCc---cccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCCccc
Confidence 78999999999999999986 589999999999987 899999999999999999999999999999999753 24
Q ss_pred CceEEEe
Q 008167 568 PKLQLTL 574 (575)
Q Consensus 568 ~~i~l~l 574 (575)
.||.||+
T Consensus 158 ~rI~ls~ 164 (180)
T 4ayb_E 158 PRIALTM 164 (180)
T ss_dssp -CEEEEC
T ss_pred CcEEEEc
Confidence 5788875
No 7
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=98.81 E-value=2.6e-09 Score=103.40 Aligned_cols=81 Identities=12% Similarity=0.080 Sum_probs=71.4
Q ss_pred HHHHHHhcCC-ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEe---eCCCeEEeeCcEEE
Q 008167 480 HTLIYFRKRP-TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVK---MDGNLSYSVLQTVN 555 (575)
Q Consensus 480 ~~~~~l~~~~-~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g---~~~~~~~~lGD~V~ 555 (575)
+.|.||+.+. ++++|+|++|+++|+||.|+. .++|+++.+.+.+++ |.||+..+.++| +++++.|++||+|+
T Consensus 72 fk~~~f~p~vGEv~~G~Is~Vt~fGifVeL~g-~~eglv~~s~l~~d~---~~fd~~~~~~vg~~~e~t~~~~~~Gd~Vr 147 (218)
T 2ckz_B 72 FRAVVFKPFLGEIVTGWISKCTAEGIKVSLLG-IFDDIFIPQNMLFEG---CYYTPEESAWIWPMDEETKLYFDVNEKIR 147 (218)
T ss_dssp EEEEEECCCTTCEEEEEEEEEETTEEEEECTT-SCCCEEEETTTSCTT---CEEETTTTEEEEECC--CEEEECTTCEEE
T ss_pred EEEEEecCCCCCEEEEEEEEEccCcEEEEccC-ccceEEEcHHHCCCC---cEEcCcCceEEeeccccCCcEEcCCCEEE
Confidence 3567888876 889999999999999999976 589999999998887 899999999999 77889999999999
Q ss_pred EEEEEecCC
Q 008167 556 IHMEVVEPQ 564 (575)
Q Consensus 556 V~V~~vd~~ 564 (575)
|+|.+++..
T Consensus 148 vrV~~v~~~ 156 (218)
T 2ckz_B 148 FRIEREVFV 156 (218)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEcc
Confidence 999999975
No 8
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=98.69 E-value=2e-08 Score=94.30 Aligned_cols=77 Identities=13% Similarity=0.128 Sum_probs=57.4
Q ss_pred HHHHhc---CC-ceeEEEEEEEecCeEEEEEcC-CceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEE
Q 008167 482 LIYFRK---RP-TDTEARIVKIRSNGFIVFVPK-FGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNI 556 (575)
Q Consensus 482 ~~~l~~---~~-~~~~g~V~~v~~~g~~V~l~~-~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V 556 (575)
|+||++ .. ..+.|+|++|.++|+||.|++ .|++|+||+++++.++ . .+....|++||.|+|
T Consensus 5 ~~~~~~~~p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~----v----------~~~~~~~~vGd~V~V 70 (182)
T 1kl9_A 5 CRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRR----I----------RSINKLIRIGRNECV 70 (182)
T ss_dssp CCSSSSSSCCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC--------------------------CTTCEEEE
T ss_pred eEeccccCCCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcc----c----------CCHHHhcCCCCEEEE
Confidence 667765 22 789999999999999999953 4899999999997543 1 135678999999999
Q ss_pred EEEEecCCCCCCceEEEe
Q 008167 557 HMEVVEPQPNRPKLQLTL 574 (575)
Q Consensus 557 ~V~~vd~~~~~~~i~l~l 574 (575)
+|.++|.+ +++|+||+
T Consensus 71 kVl~vD~~--~~rI~LSl 86 (182)
T 1kl9_A 71 VVIRVDKE--KGYIDLSK 86 (182)
T ss_dssp EEEEEETT--TTEEEEES
T ss_pred EEEEEECC--CCEEEEEE
Confidence 99999975 89999987
No 9
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.66 E-value=8.2e-08 Score=91.00 Aligned_cols=80 Identities=14% Similarity=0.171 Sum_probs=68.1
Q ss_pred ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCC---
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPN--- 566 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~--- 566 (575)
+.++|+|+++.++|+||.|. +++|++|.+++.+++ +.||+...++++++....|++||.|+|+|.+++.+..
T Consensus 83 ev~~G~V~~v~~~G~fV~l~--~~eglvhis~l~~~~---~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~p~ 157 (187)
T 1go3_E 83 ELIEGEVVDVVEFGSFVRLG--PLDGLIHVSQIMDDY---VSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERKR 157 (187)
T ss_dssp CEEEEEEEEEETTEEEEECS--SSEEEEEGGGSCSSC---EEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC----
T ss_pred CEEEEEEEEEeCcEEEEEEc--CccEEEEhHHhCCCc---ceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCCCC
Confidence 78999999999999999995 489999999998775 7899988999988888999999999999999997532
Q ss_pred CCceEEEe
Q 008167 567 RPKLQLTL 574 (575)
Q Consensus 567 ~~~i~l~l 574 (575)
..+|.||+
T Consensus 158 ~~~I~lS~ 165 (187)
T 1go3_E 158 GSKIALTM 165 (187)
T ss_dssp -CEEEEEC
T ss_pred ccEEEEEE
Confidence 23888886
No 10
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=98.65 E-value=2.7e-08 Score=93.03 Aligned_cols=77 Identities=13% Similarity=0.092 Sum_probs=59.6
Q ss_pred HHHHhcC---C-ceeEEEEEEEecCeEEEEEcC-CceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEE
Q 008167 482 LIYFRKR---P-TDTEARIVKIRSNGFIVFVPK-FGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNI 556 (575)
Q Consensus 482 ~~~l~~~---~-~~~~g~V~~v~~~g~~V~l~~-~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V 556 (575)
|+|+++. . ..+.|+|++|.++|+||.|++ .|++|+||+++++.++ . .+....|++||.|+|
T Consensus 5 ~~~~~~~~p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~----v----------~~~~~~~~vGd~V~v 70 (175)
T 2a19_A 5 CRFYENKYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRR----I----------RSIQKLIRVGKNDVA 70 (175)
T ss_dssp CCSSSSSSCCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC----------------------CCCCCCCTTSEEEE
T ss_pred eEEhhhcCCCCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcc----c----------CCHHHcCCCCCEEEE
Confidence 4566665 3 789999999999999999963 4899999999997542 1 245678999999999
Q ss_pred EEEEecCCCCCCceEEEe
Q 008167 557 HMEVVEPQPNRPKLQLTL 574 (575)
Q Consensus 557 ~V~~vd~~~~~~~i~l~l 574 (575)
+|.++|.+ +++|.||+
T Consensus 71 kVl~vd~~--~~~I~LSl 86 (175)
T 2a19_A 71 VVLRVDKE--KGYIDLSK 86 (175)
T ss_dssp EEEEEETT--TTEEEEES
T ss_pred EEEEEECC--CCeEEEEE
Confidence 99999975 89999986
No 11
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=98.65 E-value=6.6e-08 Score=78.51 Aligned_cols=65 Identities=11% Similarity=0.138 Sum_probs=57.0
Q ss_pred ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCCCc
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 569 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~~~ 569 (575)
+.+.|.|+++.++|+||.|++ +++|+||++++..++ + ..|++||+|+|+|.++|.+ ++|
T Consensus 7 ~iv~G~V~~v~~~G~fV~l~~-~~~Gllh~sel~~~~---~---------------~~~~~Gd~V~v~V~~vd~~--~~~ 65 (80)
T 2k52_A 7 KFYKGVVTRIEKYGAFINLNE-QVRGLLRPRDMISLR---L---------------ENLNVGDEIIVQAIDVRPE--KRE 65 (80)
T ss_dssp CEEEEEEEEEETTEEEEEEET-TEEEEECGGGCSSCC---G---------------GGCCTTCEEEEEEEEEETT--TTE
T ss_pred CEEEEEEEEEeCCEEEEEECC-CCEEEEEHHHCCccc---c---------------eeeCCCCEEEEEEEEEECC--CCE
Confidence 679999999999999999987 899999999987542 1 4599999999999999975 799
Q ss_pred eEEEeC
Q 008167 570 LQLTLI 575 (575)
Q Consensus 570 i~l~l~ 575 (575)
|.|++.
T Consensus 66 i~lsl~ 71 (80)
T 2k52_A 66 IDFKYI 71 (80)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 999973
No 12
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.64 E-value=7.6e-08 Score=89.97 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=64.6
Q ss_pred HHHhcCC-ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCc--EEEEeeCCCeEEeeCcEEEEEEE
Q 008167 483 IYFRKRP-TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQ--QKIVKMDGNLSYSVLQTVNIHME 559 (575)
Q Consensus 483 ~~l~~~~-~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~--~~l~g~~~~~~~~lGD~V~V~V~ 559 (575)
.+++... +.++|+|++++++|+||.|. ..+|+||++.+++. |.||+.. .+|+|++++..|++||.|+|+|.
T Consensus 75 ~~~~~~~Gev~~G~V~~v~~fG~fV~l~--~~~glvhis~l~~~----~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~ 148 (172)
T 2c35_B 75 IVFRPFKGEVVDAVVTQVNKVGLFTEIG--PMSCFISRHSIPSE----MEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIV 148 (172)
T ss_dssp EEECCCTTCEEEEEEEEEETTEEEEEET--TEEEEEEGGGSCTT----EEEESSSSSCEEEETTSCSEEETTCEEEEEEE
T ss_pred EEeeCCCCCEEEEEEEEEeCCEEEEEEC--CEEEEEEHHHCCCC----cEECCCCCccEEEeCCCCEEECCCCEEEEEEE
Confidence 3455555 78999999999999999995 57899999999643 6777766 78898888899999999999999
Q ss_pred EecCC
Q 008167 560 VVEPQ 564 (575)
Q Consensus 560 ~vd~~ 564 (575)
++|.+
T Consensus 149 ~vd~~ 153 (172)
T 2c35_B 149 GTRVD 153 (172)
T ss_dssp EEEEE
T ss_pred EEEcC
Confidence 99975
No 13
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.61 E-value=1.5e-08 Score=114.50 Aligned_cols=166 Identities=14% Similarity=0.157 Sum_probs=108.1
Q ss_pred hhhHHHHHHHHHHcCCcc--CC--CCHHHHH---HHHHHHhCCChhHHHHH-HHHHHhhccCceecccCCCCCCCCCccc
Q 008167 340 KEMLEPLLRTAAAVGLNL--DV--SSSKALA---DSLDRAVGDDPYFNKLI-RILATRCMTQAVYFCSGDLTPPEFHHYG 411 (575)
Q Consensus 340 ~~~~~~l~~~~~~~g~~~--~~--~~~~~l~---~~l~~~~~~~~~~~~~l-~~~~~r~m~~a~Y~~~~~~~~~~~~H~g 411 (575)
+..++.+..++.-.|... +. ..+.+++ +.+..+ +. + ...++ +...+|+|.+|.| +. .|||
T Consensus 548 ~k~~ekl~~FL~i~G~~~pLD~t~VHPEsY~~a~kil~~~-g~-~-~e~li~~~~~Lrsl~~a~Y------a~---~hfG 615 (785)
T 3bzc_A 548 EKTFEQAAGFLRVMNGDNPLDASAVHPETYPLVQRIAADT-ER-D-IRSLIGDSAFLKRLDPKKF------TD---ETFG 615 (785)
T ss_dssp HHHHHHHGGGEECTTSSCGGGGSSCCGGGHHHHHHHHHHH-TC-C-HHHHTTCHHHHHHSCGGGT------CC---SSSC
T ss_pred HHHHHHhhheEEECCcccccccCcCCHHHHHHHHHHHHHc-CC-C-HHHHhhhHHHHHhcCHHHH------hh---hcCC
Confidence 445555555555555432 21 2455554 555554 32 2 23444 5567899999999 31 4999
Q ss_pred cCCCCccccccccccchhHHHHHHHHHHhCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-
Q 008167 412 LAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRK-RP- 489 (575)
Q Consensus 412 L~~~~YthfTSPIRRY~DlvvHr~L~~~l~~~~~~~~~~~~~~l~~~~~~~n~~~~~a~~a~r~~~~~~~~~~l~~-~~- 489 (575)
|+ .+||+++.++....-+...+....+ + ++. .-+++ ++
T Consensus 616 l~-----------------tl~rIi~eL~kpg~d~R~~~~~~~~---~--------------~~v------e~~~~l~vG 655 (785)
T 3bzc_A 616 LP-----------------TVTDILKELDKPGRDPRPEFKTAEF---Q--------------EGV------ESLKDLKPG 655 (785)
T ss_dssp HH-----------------HHHHHHHHHHSTTCCCSCCCCTTTT---C--------------CCC------CSSTTCCTT
T ss_pred cH-----------------HHHHHHHHHhccCCChhhhcccchh---h--------------hcc------cchhhcCCC
Confidence 76 8999999988543212111111111 0 000 00112 22
Q ss_pred ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCCCc
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 569 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~~~ 569 (575)
.+++|+|++|.+||+||.|. .+++|+||++++++. |.++ .+..|++||.|+|+|.+||.+ +++
T Consensus 656 ~iv~G~V~~V~~fGaFV~l~-~~~eGLVhiS~Lsd~----~v~d----------~~~~~~vGd~V~VkVi~VD~~--~~r 718 (785)
T 3bzc_A 656 MVLEGVVTNVTNFGAFVDIG-VHQDGLVHISALSEK----FVKD----------PYEVVKAGDIVKVKVMEVDIP--RNR 718 (785)
T ss_dssp CBCCCEEEEEETTEEEEECS-SSSEEEEETTTSCSS----CCSC----------HHHHCCTTCCCCCBEEEEETT--TTE
T ss_pred CEEEEEEEEEecCCeEEEeC-CCcEEEEEHHHcCcc----ccCC----------hhheeCCCCEEEEEEEEEECC--CCE
Confidence 68999999999999999996 489999999999864 4443 357799999999999999976 899
Q ss_pred eEEEe
Q 008167 570 LQLTL 574 (575)
Q Consensus 570 i~l~l 574 (575)
|.||+
T Consensus 719 I~LSl 723 (785)
T 3bzc_A 719 VGLSM 723 (785)
T ss_dssp EEECC
T ss_pred EEEEE
Confidence 99986
No 14
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=98.58 E-value=1.1e-07 Score=84.57 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=58.7
Q ss_pred ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCCCc
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 569 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~~~ 569 (575)
..+.|.|++|.++|+||.|++ |++|+||++++.+++ .. +....|++||.|+|+|..+|.+ +++
T Consensus 9 ~iv~G~V~~i~~~G~FV~l~~-~~~Glihisel~~~~----~~----------~~~~~~~vGd~V~vkV~~vd~~--~~k 71 (130)
T 2k4k_A 9 SVYTGKVTGLQAYGAFVALDE-ETQGLVHISEVTHGF----VK----------DINEHLSVGDEVQVKVLAVDEE--KGK 71 (130)
T ss_dssp CEEEEEEEEEETTEEEEEEET-TEEEEEEGGGTSSSC----CS----------CGGGTCCTTCEEEEEEEEEETT--TTE
T ss_pred CEEEEEEEEEeCCeEEEEECC-CcEEEEEHHHCCccc----cc----------CccccCCCCCEEEEEEEEEeCC--CCE
Confidence 678999999999999999986 899999999998653 21 2356799999999999999975 789
Q ss_pred eEEEe
Q 008167 570 LQLTL 574 (575)
Q Consensus 570 i~l~l 574 (575)
|.||+
T Consensus 72 I~LSl 76 (130)
T 2k4k_A 72 ISLSI 76 (130)
T ss_dssp EEEES
T ss_pred EEEEE
Confidence 99986
No 15
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=98.54 E-value=2.2e-08 Score=96.01 Aligned_cols=79 Identities=13% Similarity=0.075 Sum_probs=70.2
Q ss_pred HHHHHhcCC-ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEe--------eCCCeEEeeC
Q 008167 481 TLIYFRKRP-TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVK--------MDGNLSYSVL 551 (575)
Q Consensus 481 ~~~~l~~~~-~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g--------~~~~~~~~lG 551 (575)
.+.||+.+. ++++|+|++++++|+||.|. .++|.+|.+++.+++ |.||+....++| +++++.|++|
T Consensus 73 k~~~f~p~~GEv~~G~Vs~vt~~GifV~lg--~~eglv~~~~l~~d~---~~fd~~~~~~v~~~~~~~~~~~~~~~~~~G 147 (203)
T 3ayh_B 73 RLIIFRPFRGEVMLGKIKSCSEEGIRVTIS--FFDDIFIPKDMLFDP---CVFRPDERAWVWKIEGEDGSEGTELYFDID 147 (203)
T ss_dssp EEEEECCCTTCEEEEEEEEEETTEEEEECS--SCCCEEEEGGGBCTT---EEEEGGGTEEEEEECCCTTSCCEEEECCTT
T ss_pred EEEEEccCCCCEEEEEEEEEeccEEEEEEe--CceEEEEcHHhCCCC---ceECccCceEEeecccccccccCCcEEcCC
Confidence 456777776 88999999999999999994 689999999998876 899999999998 7778999999
Q ss_pred cEEEEEEEEecCC
Q 008167 552 QTVNIHMEVVEPQ 564 (575)
Q Consensus 552 D~V~V~V~~vd~~ 564 (575)
|+|+|+|.+++..
T Consensus 148 d~VrvrV~~v~~~ 160 (203)
T 3ayh_B 148 EEIRFQIESEDFV 160 (203)
T ss_dssp CEEEEEEEEEEEC
T ss_pred CEEEEEEEEEEcc
Confidence 9999999999873
No 16
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.52 E-value=5e-08 Score=85.46 Aligned_cols=71 Identities=17% Similarity=0.113 Sum_probs=58.8
Q ss_pred ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCCCc
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 569 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~~~ 569 (575)
..+.|+|++|.++|+||.|+.++.+|+||++++.+++ . .+....|++||.|+|+|..+|.+..+++
T Consensus 24 ~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~----~----------~~~~~~~~~Gd~V~VkV~~vd~~~~~~~ 89 (119)
T 2cqo_A 24 TIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCR----V----------DKPSEIVDVGDKVWVKLIGREMKNDRIK 89 (119)
T ss_dssp CEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSC----C----------SCHHHHCCTTCEEEEEEEEEEECSSCEE
T ss_pred CEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCccc----c----------cChhhcCCCCCEEEEEEEEEeccccCce
Confidence 6899999999999999999866689999999987653 1 1345679999999999999997522469
Q ss_pred eEEEe
Q 008167 570 LQLTL 574 (575)
Q Consensus 570 i~l~l 574 (575)
|.|++
T Consensus 90 i~LSl 94 (119)
T 2cqo_A 90 VSLSM 94 (119)
T ss_dssp EEEES
T ss_pred EEEEE
Confidence 99986
No 17
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.51 E-value=1.4e-07 Score=82.16 Aligned_cols=69 Identities=19% Similarity=0.290 Sum_probs=58.0
Q ss_pred ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCCCc
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 569 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~~~ 569 (575)
..++|+|+++.++|+||.|++ |++|+||++++..+. +. .+....|++||.|+|+|..+|.+ +++
T Consensus 32 ~~~~G~V~~v~~~G~FV~l~~-~~~Glvhisel~~~~---~~----------~~~~~~~~vGd~V~vkV~~vd~~--~~r 95 (115)
T 2khi_A 32 TKLTGRVTNLTDYGCFVEIEE-GVEGLVHVSEMDWTN---KN----------IHPSKVVNVGDVVEVMVLDIDEE--RRR 95 (115)
T ss_dssp CEEEEEEEEEETTEEEEECST-TCEEEEETTSSSCSS---TT----------CSSTTTCCTTCEEEEEEEEEETT--TTE
T ss_pred CEEEEEEEEEECCEEEEEECC-CCEEEEEHHHCCccc---cc----------cCcccEECCCCEEEEEEEEEECC--CCE
Confidence 689999999999999999975 899999999886421 11 24566799999999999999975 789
Q ss_pred eEEEe
Q 008167 570 LQLTL 574 (575)
Q Consensus 570 i~l~l 574 (575)
|.|++
T Consensus 96 I~lsl 100 (115)
T 2khi_A 96 ISLGL 100 (115)
T ss_dssp EEECC
T ss_pred EEEEE
Confidence 99986
No 18
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.49 E-value=1.3e-07 Score=80.62 Aligned_cols=68 Identities=18% Similarity=0.146 Sum_probs=57.0
Q ss_pred ceeEEEEEEEecCeEEEEEcCC--ceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCC
Q 008167 490 TDTEARIVKIRSNGFIVFVPKF--GIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNR 567 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~--gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~ 567 (575)
+.+.|.|++|.++|+||.|.++ +++|+||++++.+++ +. .+....|++||.|+|+|..+|.
T Consensus 14 ~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~---~~----------~~~~~~~~~Gd~V~VkV~~vd~---- 76 (103)
T 2eqs_A 14 DIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREG---RV----------ANVADVVSKGQRVKVKVLSFTG---- 76 (103)
T ss_dssp CEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSS---CC----------CCHHHHCCTTCEEEEEEEEEET----
T ss_pred CEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCc---cc----------CCcccEeCCCCEEEEEEEEEEC----
Confidence 6899999999999999999875 899999999995442 11 2345679999999999999994
Q ss_pred CceEEEe
Q 008167 568 PKLQLTL 574 (575)
Q Consensus 568 ~~i~l~l 574 (575)
.||.||+
T Consensus 77 ~~i~LSl 83 (103)
T 2eqs_A 77 TKTSLSM 83 (103)
T ss_dssp TEEEEES
T ss_pred CeeEEEE
Confidence 5899886
No 19
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.44 E-value=3.2e-07 Score=88.47 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=60.8
Q ss_pred HHhcCC-ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcE--EEEeeCCCeEEeeCcEEEEEEEE
Q 008167 484 YFRKRP-TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQ--KIVKMDGNLSYSVLQTVNIHMEV 560 (575)
Q Consensus 484 ~l~~~~-~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~--~l~g~~~~~~~~lGD~V~V~V~~ 560 (575)
+++... ++++|+|+++.++|+||.|.. ++|+||++.+++. |.||+... .+.+++ +.|++||.|+|+|.+
T Consensus 78 ~~~p~vGev~~G~V~~vt~fG~FVelg~--~dGlVhiS~l~d~----~~~d~~~~~w~~~~~~--~~~~~Gd~VrVkV~~ 149 (215)
T 2b8k_G 78 VFKPFKGEVVDGTVVSCSQHGFEVQVGP--MKVFVTKHLMPQD----LTFNAGSNPPSYQSSE--DVITIKSRIRVKIEG 149 (215)
T ss_dssp EECCCTTEEEEEEEEEEETTEEEEECTT--SEEEEEGGGSCSS----CCCBSSCSSCEEECSS--CEEETTCEEEEEEEE
T ss_pred eeccCCCCEEEEEEEEEecceEEEEecC--cEEEEEHHHCCcc----ceeccccccceeeccc--cEECCCCEEEEEEEE
Confidence 455555 789999999999999999964 8999999999653 67777655 677654 679999999999999
Q ss_pred ecCC
Q 008167 561 VEPQ 564 (575)
Q Consensus 561 vd~~ 564 (575)
+|.+
T Consensus 150 vd~~ 153 (215)
T 2b8k_G 150 CISQ 153 (215)
T ss_dssp EEEE
T ss_pred EEcC
Confidence 9975
No 20
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.44 E-value=4e-07 Score=84.90 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=59.3
Q ss_pred HHHHhcCC-ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcE--EEEeeCCCeEEeeCcEEEEEE
Q 008167 482 LIYFRKRP-TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQ--KIVKMDGNLSYSVLQTVNIHM 558 (575)
Q Consensus 482 ~~~l~~~~-~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~--~l~g~~~~~~~~lGD~V~V~V 558 (575)
+.+++... +.++|+|++++++|+||.+.. .+|+||++.+++. |.||+... ++.+++ +.|++||.|+|+|
T Consensus 76 ~~~~~~~~Gev~~G~V~~v~~fG~FV~l~~--~dglvhis~l~~~----~~~d~~~~~~~~~~~~--~~~~~Gd~V~vkV 147 (171)
T 1y14_B 76 AVVFKPFKGEVVDGTVVSCSQHGFEVQVGP--MKVFVTKHLMPQD----LTFNAGSNPPSYQSSE--DVITIKSRIRVKI 147 (171)
T ss_dssp EEEECCCTTCEEEEEEEEEETTEEEEEETT--EEEEEEGGGSCTT----CEECC-----CEECSS--CEECTTCEEEEEE
T ss_pred EEEccCCCCCEEEEEEEEEecCEEEEEecC--eEEEEEHHHCCCC----ceECcccCceEEeccc--eEECCCCEEEEEE
Confidence 33445544 789999999999999999974 9999999999753 67877655 566544 6799999999999
Q ss_pred EEecCC
Q 008167 559 EVVEPQ 564 (575)
Q Consensus 559 ~~vd~~ 564 (575)
.++|.+
T Consensus 148 ~~vd~~ 153 (171)
T 1y14_B 148 EGCISQ 153 (171)
T ss_dssp EEEEEE
T ss_pred EEEEcC
Confidence 999975
No 21
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.39 E-value=2.9e-07 Score=79.34 Aligned_cols=68 Identities=18% Similarity=0.278 Sum_probs=58.5
Q ss_pred ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCCCc
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 569 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~~~ 569 (575)
..+.|.|+++.++|+||.|++ |++|+||.+++.+++ . .+....|++||+|+|+|..+|.+ +++
T Consensus 33 ~iv~G~V~~v~~~G~fV~l~~-~~~Gll~~sel~~~~----~----------~~~~~~~~vGd~V~v~V~~vd~~--~~k 95 (109)
T 2khj_A 33 AIVTGKVTAVDAKGATVELAD-GVEGYLRASEASRDR----V----------EDATLVLSVGDEVEAKFTGVDRK--NRA 95 (109)
T ss_dssp SEEEEEEEEECSSCEEEECST-TCBCCBCTTCCCSSS----S----------SSGGGSCCTTCEEEEEEEEEETT--TTE
T ss_pred CEEEEEEEEEECCeEEEEECC-CCEEEEEHHHcCccc----c----------cChhhccCCCCEEEEEEEEEECC--CCE
Confidence 789999999999999999986 899999999987653 1 13456799999999999999975 789
Q ss_pred eEEEe
Q 008167 570 LQLTL 574 (575)
Q Consensus 570 i~l~l 574 (575)
|.||+
T Consensus 96 i~LS~ 100 (109)
T 2khj_A 96 ISLSV 100 (109)
T ss_dssp EEEET
T ss_pred EEEEE
Confidence 99986
No 22
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=98.37 E-value=6.5e-07 Score=89.49 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=61.0
Q ss_pred HHHhcCC---ceeEEEEEEEecCeEEEEEcCC-ceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEE
Q 008167 483 IYFRKRP---TDTEARIVKIRSNGFIVFVPKF-GIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHM 558 (575)
Q Consensus 483 ~~l~~~~---~~~~g~V~~v~~~g~~V~l~~~-gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V 558 (575)
.|++..+ ..+.|.|+++.++|+||.|+++ |++|+||+++++.++ .. +....|++||.|+|+|
T Consensus 3 ~~~~~~p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~----v~----------~~~~~~kvGd~V~vkV 68 (275)
T 3aev_A 3 RKAREYPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTW----VR----------NIRDYLKEGQKVVAKV 68 (275)
T ss_dssp ----CCCCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSC----CS----------CGGGTCCTTCEEEEEE
T ss_pred cccccCCCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCccc----cc----------CHHhccCCCCEEEEEE
Confidence 3555553 6899999999999999999874 999999999997653 11 2356799999999999
Q ss_pred EEecCCCCCCceEEEe
Q 008167 559 EVVEPQPNRPKLQLTL 574 (575)
Q Consensus 559 ~~vd~~~~~~~i~l~l 574 (575)
..+|.+ +++|.||+
T Consensus 69 i~vD~~--~~~I~LSl 82 (275)
T 3aev_A 69 IRVDPR--KGHIDLSL 82 (275)
T ss_dssp EEEETT--TTEEEEES
T ss_pred EEEECC--CCEEEEEE
Confidence 999975 89999986
No 23
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=98.30 E-value=4.2e-07 Score=92.11 Aligned_cols=77 Identities=13% Similarity=0.149 Sum_probs=63.8
Q ss_pred HHHHhcC---C-ceeEEEEEEEecCeEEEEEcC-CceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEE
Q 008167 482 LIYFRKR---P-TDTEARIVKIRSNGFIVFVPK-FGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNI 556 (575)
Q Consensus 482 ~~~l~~~---~-~~~~g~V~~v~~~g~~V~l~~-~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V 556 (575)
|+|+.+. . ..+.|.|++|.++|+||.|.+ .|++|+||+++++.++ . ++....|++||.|+|
T Consensus 3 ~~f~~~~~~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~----i----------~~~~~~~kvGd~V~V 68 (308)
T 1q8k_A 3 CRFYQHKFPEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRR----I----------RSINKLIRIGRNECV 68 (308)
T ss_dssp CCSSSSCCCSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSS----C----------SCCTTTCSSSCEEEE
T ss_pred eEehhhcCCCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCccc----c----------cCHHHhcCCCCEEEE
Confidence 4566554 2 689999999999999999986 4899999999997542 1 245677999999999
Q ss_pred EEEEecCCCCCCceEEEe
Q 008167 557 HMEVVEPQPNRPKLQLTL 574 (575)
Q Consensus 557 ~V~~vd~~~~~~~i~l~l 574 (575)
+|..+|.+ +++|.||+
T Consensus 69 kVl~vD~~--~~rI~LSl 84 (308)
T 1q8k_A 69 KVIRVDKE--KGYIDLSK 84 (308)
T ss_dssp EEEEEETT--TTEEEEEC
T ss_pred EEEEEeCC--CCEEEEEE
Confidence 99999975 89999986
No 24
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.24 E-value=4.8e-07 Score=84.43 Aligned_cols=75 Identities=9% Similarity=0.048 Sum_probs=61.4
Q ss_pred HHHHhcCC-ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecC--CcEEEEeeCCCeEEeeCcEEEEEE
Q 008167 482 LIYFRKRP-TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDE--QQQKIVKMDGNLSYSVLQTVNIHM 558 (575)
Q Consensus 482 ~~~l~~~~-~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~--~~~~l~g~~~~~~~~lGD~V~V~V 558 (575)
+.+++... +.++|+|++++++|+||.+. .++|+||.+++++. |.||+ ...++ ++++..|++||+|+|+|
T Consensus 77 ~ivf~p~~Gev~~G~V~~v~~fG~FV~l~--~~~glVh~s~l~~~----~~~d~~~~~~~~--~~~~~~~~~Gd~VrvkV 148 (172)
T 3h0g_G 77 AVLWRPFRGEVVDAIVTTVNKMGFFANIG--PLNVFVSSHLVPPD----MKFDPTANPPNY--SGEDQVIEKGSNVRLKI 148 (172)
T ss_dssp EEEECCCTTCEEECCCCEEETTEEECCBT--TBCCEEEGGGSCTT----CCCBSSSSSCBE--ESSSCEECSSCCEEEEE
T ss_pred EeeeccCCCCEEEEEEEEEEcceEEEEeC--CeEEEEEHHHCCCc----cccCcccccceE--ecCCcEECCCCEEEEEE
Confidence 44555555 78999999999999999995 57899999999654 56665 44555 56788999999999999
Q ss_pred EEecCC
Q 008167 559 EVVEPQ 564 (575)
Q Consensus 559 ~~vd~~ 564 (575)
.+++.+
T Consensus 149 ~~vd~~ 154 (172)
T 3h0g_G 149 VGTRTD 154 (172)
T ss_dssp EEEEES
T ss_pred EEEECC
Confidence 999986
No 25
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.02 E-value=2.7e-06 Score=74.40 Aligned_cols=70 Identities=16% Similarity=0.114 Sum_probs=54.5
Q ss_pred ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCCCc
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 569 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~~~ 569 (575)
+.++|.|++|.++|+||.|...+.+|+++.+.. .+| +.++ ..+..|++||.|+|+|.++|.+ +++
T Consensus 23 ~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~-~~~---~~~~---------~~~~~~~~Gd~V~vkV~~vd~~--~~~ 87 (119)
T 1wi5_A 23 MLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKA-QEY---IRQK---------NKGAKLKVGQYLNCIVEKVKGN--GGV 87 (119)
T ss_dssp CEEEEEEEEECSSEEEEECCCSSCEEEEEHHHH-HHH---HHHH---------SSSCCCCTTCEEEEEEEECCTT--SCE
T ss_pred CEEEEEEEEEeCceEEEEECCCCeEEEEEEecc-ccc---cccc---------CccCEeCCCCEEEEEEEEEeCC--CCE
Confidence 689999999999999999984467777665543 222 3332 2357899999999999999975 789
Q ss_pred eEEEe
Q 008167 570 LQLTL 574 (575)
Q Consensus 570 i~l~l 574 (575)
|.|++
T Consensus 88 i~Lsl 92 (119)
T 1wi5_A 88 VSLSV 92 (119)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 99986
No 26
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=97.87 E-value=3.9e-06 Score=83.64 Aligned_cols=69 Identities=12% Similarity=0.041 Sum_probs=58.6
Q ss_pred ceeEEEEEEEecCeEEEEEcC-CceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCCC
Q 008167 490 TDTEARIVKIRSNGFIVFVPK-FGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRP 568 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~-~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~~ 568 (575)
..+.|.|++|.++|+||.|++ .|++|+||+++++.++ . .+....+++||.|+|+|..+|.+ ++
T Consensus 13 ~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~----v----------~~~~~~~~vGd~V~VkVi~vd~~--~g 76 (266)
T 3cw2_C 13 EILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKW----V----------KNIRDVLKENRKVIVKVIRVDRR--KG 76 (266)
T ss_dssp CEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSS----C----------CCHHHHSCTTCEEEEEECCCCSS--SC
T ss_pred CEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCccc----c----------cCHHHhCcCCCEEEEEEEEEeCC--CC
Confidence 689999999999999999975 4899999999997653 1 12456799999999999999864 78
Q ss_pred ceEEEe
Q 008167 569 KLQLTL 574 (575)
Q Consensus 569 ~i~l~l 574 (575)
+|.||+
T Consensus 77 ~I~LSl 82 (266)
T 3cw2_C 77 TVDVSL 82 (266)
T ss_dssp CCBEES
T ss_pred EEEEEE
Confidence 999986
No 27
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=97.77 E-value=1.7e-05 Score=93.52 Aligned_cols=69 Identities=13% Similarity=0.085 Sum_probs=59.5
Q ss_pred ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCCCc
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 569 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~~~ 569 (575)
.+++|+|++|.++|+||.|. .|++|+||++++++++ |..+ ....|++||.|+|+|..||.+ +++
T Consensus 904 ~iv~G~V~~V~~fGaFV~L~-~gveGLVHiSelsd~~---~v~~----------p~~v~kvGd~V~vkVl~VD~~--~~r 967 (1219)
T 3psi_A 904 SIIPVRVERFWHNDIICTTN-SEVECVVNAQRHAGAQ---LRRP----------ANEIYEIGKTYPAKVIYIDYA--NIT 967 (1219)
T ss_dssp CEEEEEEEEECSSCEEEECT-TSCEEEECTTSSSSTT---SCSC----------STTTSCTTCEEEEEEEEEEGG--GTE
T ss_pred CEEEEEEEEEecceEEEEeC-CCceEEEEHHHcCCCc---ccCC----------HHHcCCCCCEEEEEEEEEECC--CCE
Confidence 57899999999999999995 5999999999998763 2333 346799999999999999975 899
Q ss_pred eEEEe
Q 008167 570 LQLTL 574 (575)
Q Consensus 570 i~l~l 574 (575)
|.||+
T Consensus 968 I~LSl 972 (1219)
T 3psi_A 968 AEVSL 972 (1219)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99987
No 28
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.69 E-value=7.1e-06 Score=91.93 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=0.0
Q ss_pred ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCCCc
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 569 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~~~ 569 (575)
..++|+|++|.++|+||.|.. |++|+||++++.+++ + .+....|++||+|+|+|.++|. ++|
T Consensus 639 ~v~~G~V~~I~~fGaFVel~~-g~eGLvHiSels~~r---v-----------~~~~d~~kvGD~V~VkVi~iD~---~gr 700 (726)
T 4aid_A 639 KIYDGKVVKVVDFGAFVNFFG-AKDGLVHVSQISNER---V-----------AKPSDVLKEGQMVKVKLLGFDD---RGK 700 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEEEEEeccEEEEEECC-CcEEEEEHHHcCccc---c-----------cCccccCCCCCEEEEEEEEECC---CCc
Confidence 689999999999999999976 899999999998653 1 1356789999999999999995 578
Q ss_pred eEEEe
Q 008167 570 LQLTL 574 (575)
Q Consensus 570 i~l~l 574 (575)
|.||+
T Consensus 701 I~LS~ 705 (726)
T 4aid_A 701 TKLSM 705 (726)
T ss_dssp -----
T ss_pred EEEEE
Confidence 88875
No 29
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=97.68 E-value=7e-05 Score=75.24 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=53.2
Q ss_pred ceeEEEEEEEecCeEEE-EEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCCC
Q 008167 490 TDTEARIVKIRSNGFIV-FVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRP 568 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V-~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~~ 568 (575)
..++|+|.+++++|+|| .+.+ |++|+||.+++.. .+++||+|+|+|..++.+ ++
T Consensus 154 ~~V~g~V~~i~~~G~fV~~i~~-g~~Glih~SEl~~----------------------~l~~Gd~v~~~V~~id~~--d~ 208 (285)
T 3go5_A 154 QNWPAIVYRLKLSGTFVYLPEN-NMLGFIHPSERYA----------------------EPRLGQVLDARVIGFREV--DR 208 (285)
T ss_dssp CEEEEEEEEEETTEEEEEETTT-TEEEEECGGGCSS----------------------CCCTTCEEEEEEEEEETT--TT
T ss_pred CEEEEEEEEEeCCcEEEEEeCC-CeEEEEEHHHccc----------------------cCCCCCEEEEEEEEEECC--CC
Confidence 68999999999999999 7754 9999999997742 379999999999999975 79
Q ss_pred ceEEEe
Q 008167 569 KLQLTL 574 (575)
Q Consensus 569 ~i~l~l 574 (575)
||+|||
T Consensus 209 kI~LSl 214 (285)
T 3go5_A 209 TLNLSL 214 (285)
T ss_dssp EEEEEC
T ss_pred eEEEEe
Confidence 999997
No 30
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=97.63 E-value=2.9e-06 Score=95.78 Aligned_cols=137 Identities=16% Similarity=0.137 Sum_probs=48.3
Q ss_pred CCCccccccccccchhHHHHH--HHHHHhCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-c
Q 008167 414 APLYTHFTSPIRRYADVVVHR--LLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRP-T 490 (575)
Q Consensus 414 ~~~YthfTSPIRRY~DlvvHr--~L~~~l~~~~~~~~~~~~~~l~~~~~~~n~~~~~a~~a~r~~~~~~~~~~l~~~~-~ 490 (575)
.|-..+|+.|..++.|++-+. .++.+....... .+-+. +.. -+++.....+.++.++..+... ...+-.. .
T Consensus 596 ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~---IdI~~-dG~-v~Is~~~~~~~~~a~~~i~~i~-~p~~~~vG~ 669 (757)
T 1e3p_A 596 APRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAE---ITIED-DGT-IYIGAADGPAAEAARATINGIA-NPTSPEVGE 669 (757)
T ss_dssp SCBCCCC------------------CTTCCCCCSC---C----------CCCBSSHHHHCC-------------------
T ss_pred CceeEEEEEChHHeehcccccceeeehhhHhhCCE---EEecC-Cce-EEEecCCHHHHHHHHHHHHHhc-chhhccccc
Confidence 478889999999999999776 666554332111 00000 000 0111111111111111111111 1111122 6
Q ss_pred eeEEEEEEEecCeEEEEEcCCceEEEEEccCC----CCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCC
Q 008167 491 DTEARIVKIRSNGFIVFVPKFGIEGPVYLTPR----GQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPN 566 (575)
Q Consensus 491 ~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l----~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~ 566 (575)
.++|+|+++.+||+||.|.. |++|+||++++ .+++ . ++....|++||+|+|+|..+|.
T Consensus 670 i~~G~V~~i~~fGaFV~l~~-g~eGLvHiSel~~~~s~~r----v----------~~~~~~~~vGd~V~VkVi~vd~--- 731 (757)
T 1e3p_A 670 RILGSVVKTTTFGAFVSLLP-GKDGLLHISQIRKLAGGKR----V----------ENVEDVLGVGQKVQVEIAEIDS--- 731 (757)
T ss_dssp ---CBEEECC-CSCEECCC----CCCCC---------------------------------CCSSCBCCCCCCCCCS---
T ss_pred EEEEEEEEccccEEEEEEcC-CcEEEEEhHHhccccCCCc----c----------cCcccccCCCCEEEEEEEEECC---
Confidence 89999999999999999975 89999999998 5442 1 2456789999999999999985
Q ss_pred CCceEEEe
Q 008167 567 RPKLQLTL 574 (575)
Q Consensus 567 ~~~i~l~l 574 (575)
++||.|++
T Consensus 732 ~grI~LS~ 739 (757)
T 1e3p_A 732 RGKLSLIP 739 (757)
T ss_dssp SCC-----
T ss_pred CCCEEEEE
Confidence 68888886
No 31
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=97.55 E-value=1.1e-05 Score=93.64 Aligned_cols=69 Identities=13% Similarity=0.085 Sum_probs=0.0
Q ss_pred ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCCCc
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 569 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~~~ 569 (575)
..++|+|++|.++|+||.|. .|++|+||++++++++ |.. +....|++||.|+|+|..||.+ +++
T Consensus 907 ~iv~G~V~~V~~fGaFV~L~-~gveGLVHiSelsd~~---~v~----------~~~~v~kvGd~V~vkVl~VD~~--~~r 970 (1030)
T 3psf_A 907 SIIPVRVERFWHNDIICTTN-SEVECVVNAQRHAGAQ---LRR----------PANEIYEIGKTYPAKVIYIDYA--NIT 970 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEEEEccCeEEEEeC-CCcEEEEEHHHcCCCc---ccC----------CHHHcCCCCCEEEEEEEEEECC--CCE
Confidence 56899999999999999995 5999999999998653 232 2457899999999999999975 899
Q ss_pred eEEEe
Q 008167 570 LQLTL 574 (575)
Q Consensus 570 i~l~l 574 (575)
|.||+
T Consensus 971 I~LSl 975 (1030)
T 3psf_A 971 AEVSL 975 (1030)
T ss_dssp -----
T ss_pred EEEEe
Confidence 99986
No 32
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=97.46 E-value=1.7e-05 Score=89.18 Aligned_cols=67 Identities=18% Similarity=0.207 Sum_probs=0.0
Q ss_pred ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCCCc
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 569 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~~~ 569 (575)
..++|+|+++.++|+||.|.. |.+|+||++++.+++ . ++....|++||+|+|+|..+|. ++|
T Consensus 629 ~i~~G~V~~i~~fGaFVel~~-g~eGLvHiSel~~~~----v----------~~~~~~~~vGd~V~VkVi~vd~---~gr 690 (723)
T 3cdi_A 629 RVYTGKVTRIVDFGAFVAIGG-GKEGLVHISQIADKR----V----------EKVTDYLQMGQEVPVKVLEVDR---QGR 690 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEEEEEecceEEEEeCC-CceEEEEHHHcCCcc----c----------cCcccccCCCCEEEEEEEEECC---CCc
Confidence 689999999999999999975 899999999997543 1 2456789999999999999995 688
Q ss_pred eEEEe
Q 008167 570 LQLTL 574 (575)
Q Consensus 570 i~l~l 574 (575)
|.||+
T Consensus 691 I~LS~ 695 (723)
T 3cdi_A 691 IRLSI 695 (723)
T ss_dssp -----
T ss_pred EEEEE
Confidence 88876
No 33
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=96.88 E-value=0.0014 Score=61.21 Aligned_cols=65 Identities=12% Similarity=0.042 Sum_probs=53.2
Q ss_pred CceeEEEEEEEecCeEEEEEcCC---------ceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEE
Q 008167 489 PTDTEARIVKIRSNGFIVFVPKF---------GIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHME 559 (575)
Q Consensus 489 ~~~~~g~V~~v~~~g~~V~l~~~---------gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~ 559 (575)
...+.|.|++|.++|++|.|... +++|+||++++...+ . .+....|++||.|+++|.
T Consensus 58 GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~----~----------~~~~~~~~~GD~V~akVi 123 (179)
T 3m7n_A 58 GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGY----V----------KEISEAVGYLDILKARVI 123 (179)
T ss_dssp TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSC----C----------SSGGGTCCTTCEEEEEEE
T ss_pred CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcch----h----------hCHhhcCCCCCEEEEEEE
Confidence 57899999999999999999764 899999999987642 1 134577999999999999
Q ss_pred EecCCCCCCceEEEe
Q 008167 560 VVEPQPNRPKLQLTL 574 (575)
Q Consensus 560 ~vd~~~~~~~i~l~l 574 (575)
+ +++.||+
T Consensus 124 ~-------~~i~LS~ 131 (179)
T 3m7n_A 124 G-------DNLRLST 131 (179)
T ss_dssp E-------TTTEEEC
T ss_pred C-------CeEEEEE
Confidence 7 5677664
No 34
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=96.64 E-value=0.0016 Score=62.34 Aligned_cols=71 Identities=14% Similarity=0.060 Sum_probs=55.3
Q ss_pred ceeEEEEEEEecCeEEEEEc-------CCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEec
Q 008167 490 TDTEARIVKIRSNGFIVFVP-------KFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVE 562 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~-------~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd 562 (575)
..+.|.|+++.++|++|.|. ..+++|.||++++...+ . +. .+....|++||.|+++|.+++
T Consensus 83 DvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~----~-~~-------~~~~~~l~~GD~V~akVisi~ 150 (209)
T 2nn6_I 83 AIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATE----K-DK-------VEIYKSFRPGDIVLAKVISLG 150 (209)
T ss_dssp CEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCS----S-CC-------CCGGGTCCSSSEEEEEEEEEE
T ss_pred CEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHccccc----c-cc-------cchhhhcCCCCEEEEEEEEEe
Confidence 68999999999999999985 23779999999887542 1 10 023566999999999999998
Q ss_pred CCCCCCceEEEe
Q 008167 563 PQPNRPKLQLTL 574 (575)
Q Consensus 563 ~~~~~~~i~l~l 574 (575)
.. +.++.||+
T Consensus 151 ~~--~~~i~LS~ 160 (209)
T 2nn6_I 151 DA--QSNYLLTT 160 (209)
T ss_dssp TT--TTEEEEEC
T ss_pred CC--CCeEEEEE
Confidence 54 45788875
No 35
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=95.71 E-value=0.0081 Score=59.03 Aligned_cols=70 Identities=11% Similarity=-0.002 Sum_probs=55.5
Q ss_pred ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCCCc
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 569 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~~~ 569 (575)
..+.|.|+++.++|++|.|.. +.+|+||++++.+.+ .+.+ .+....|++||.|+++|.+++.+ .+
T Consensus 76 DiV~G~V~~v~~~ga~VdI~~-~~~GlL~isei~~~~---~~~~--------~~~~~~l~vGD~V~arVi~v~~~---~~ 140 (251)
T 2je6_I 76 DIVIGLVEDVEIYGWVVDIKA-PYKAYLPASNLLGRS---INVG--------EDLRRYLDVGDYVIARIENFDRS---ID 140 (251)
T ss_dssp CEEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTSC---CCTT--------CCCSSSCCTTCEEEEEEEEEETT---EE
T ss_pred CEEEEEEEEEeCceEEEEcCC-CeEEEEEHHHhcCCc---cccc--------cchhhcCCCCCEEEEEEEEECCC---Cc
Confidence 689999999999999999975 789999999877542 1111 13456799999999999999863 57
Q ss_pred eEEEe
Q 008167 570 LQLTL 574 (575)
Q Consensus 570 i~l~l 574 (575)
+.||+
T Consensus 141 i~LS~ 145 (251)
T 2je6_I 141 PVLSV 145 (251)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 87774
No 36
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=95.67 E-value=0.019 Score=55.66 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=54.8
Q ss_pred ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCCCc
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 569 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~~~ 569 (575)
..+.|.|+++.++|++|.|.. +.+|.||++++.... +. .+....|++||.|.++|.+++.+ .+
T Consensus 59 DiV~G~V~~v~~~~a~V~I~~-~~~g~l~isev~~~~---~~----------~~~~~~l~~GD~V~arVi~v~~~---~~ 121 (229)
T 2ba0_A 59 DVVIGIIREVAANGWAVDIYS-PYQAFLPVSENPEMK---PN----------KKPNEVLDIGDAIIAKVLNIDPK---MK 121 (229)
T ss_dssp CEEEEEEEEECSSEEEEECSS-SSCEEEEGGGCTTCC---TT----------SCGGGTCCTTCEEEEEEEEECTT---CC
T ss_pred CEEEEEEEEEeCCeEEEEeCC-CeEEEEEHHHccccc---cc----------cchhcccCCCCEEEEEEEEECCC---Cc
Confidence 689999999999999999975 689999999887421 11 13456799999999999999864 57
Q ss_pred eEEEe
Q 008167 570 LQLTL 574 (575)
Q Consensus 570 i~l~l 574 (575)
+.||+
T Consensus 122 i~LS~ 126 (229)
T 2ba0_A 122 VTLTM 126 (229)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 77774
No 37
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=95.53 E-value=0.018 Score=58.86 Aligned_cols=62 Identities=13% Similarity=0.057 Sum_probs=50.8
Q ss_pred ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCCCc
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 569 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~~~ 569 (575)
....|+|..+.++|++|.+. ++||++|.++.. .+..|++||+|+|.|..++.+....+
T Consensus 136 eIV~G~V~ri~~~~v~VDlG--k~EgiLp~sE~i--------------------p~E~~~vGD~Vkv~V~~V~~~~kg~~ 193 (344)
T 1hh2_P 136 TVTTAEVIRVMGEWADIRIG--KLETRLPKKEWI--------------------PGEEIKAGDLVKVYIIDVVKTTKGPK 193 (344)
T ss_dssp CEEEEEEEEECSSEEEEEET--TEEEEEEGGGSC--------------------TTCCCCTTCEEEEEEEEEEEETTEEE
T ss_pred CEEEEEEEEEecCcEEEEeC--CeEEEEeHHHcC--------------------CCcCCCCCCEEEEEEEEEEcCCCCcE
Confidence 68999999999999999996 899999998653 23579999999999999986533346
Q ss_pred eEEE
Q 008167 570 LQLT 573 (575)
Q Consensus 570 i~l~ 573 (575)
|.||
T Consensus 194 I~LS 197 (344)
T 1hh2_P 194 ILVS 197 (344)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
No 38
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=95.44 E-value=0.011 Score=57.50 Aligned_cols=71 Identities=8% Similarity=-0.054 Sum_probs=55.0
Q ss_pred ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCCCc
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 569 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~~~ 569 (575)
..+.|.|+++.++|++|.|.. +.+|.||++++.+.. ...+. .+....|++||.|+++|.+++.+ .+
T Consensus 68 DiV~G~V~~v~~~~~~V~I~~-~~~g~l~isei~~~~---~~~~~-------~~~~~~l~~GD~V~a~Vi~v~~~---~~ 133 (235)
T 2z0s_A 68 DVVIGLIQSVGIMNWFVDINS-PYVAVLSVQDFLGRP---FNPAV-------DDMQSLLKVGDYIKAKVVAFDKT---RS 133 (235)
T ss_dssp CCEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTSC---CCTTT-------TCCTTSSCTTCEEEEEEEEECTT---SC
T ss_pred CEEEEEEEEEeCCeEEEEeCC-CeEEEEEHHHhCCCc---cccch-------hhHhhcCCCCCEEEEEEEEECCC---Cc
Confidence 678999999999999999975 789999999876421 11111 12356799999999999999863 47
Q ss_pred eEEEe
Q 008167 570 LQLTL 574 (575)
Q Consensus 570 i~l~l 574 (575)
+.||+
T Consensus 134 i~LS~ 138 (235)
T 2z0s_A 134 PLLTV 138 (235)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 87774
No 39
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=94.22 E-value=0.076 Score=53.05 Aligned_cols=62 Identities=18% Similarity=0.067 Sum_probs=47.3
Q ss_pred ceeEEEEEEEe-cCeEEEEEcCC-ceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCC
Q 008167 490 TDTEARIVKIR-SNGFIVFVPKF-GIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNR 567 (575)
Q Consensus 490 ~~~~g~V~~v~-~~g~~V~l~~~-gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~ 567 (575)
+...|.|++++ ++|+||.+. . |.+|+||+++++.. . ...+++||+|.|.+ .+|. +
T Consensus 71 ~~~~g~V~~v~~~~GaFVdiG-~~~~d~lvp~sel~~~------~------------~~~~~~Gd~v~v~l-~iD~---~ 127 (285)
T 3go5_A 71 QFGWGRVTEVRKDLGVFVDTG-LPDKEIVVSLDILPEL------K------------ELWPKKGDQLYIRL-EVDK---K 127 (285)
T ss_dssp SCEEEEEEEEETTTEEEEECS-CTTCCEEEEGGGSCSS------G------------GGSCCTTCEEEEEE-EECT---T
T ss_pred CEEEEEEEEEccCceEEEEEC-CCCcEEEEEHHHCCcc------c------------ccccCCCCEEEEEE-EECC---C
Confidence 67899999999 799999994 4 68999999988621 1 12358899998775 5664 4
Q ss_pred CceEEEe
Q 008167 568 PKLQLTL 574 (575)
Q Consensus 568 ~~i~l~l 574 (575)
+||.+++
T Consensus 128 ~Ri~ls~ 134 (285)
T 3go5_A 128 DRIWGLL 134 (285)
T ss_dssp SCEEEEE
T ss_pred CcEEEEe
Confidence 6888875
No 40
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=94.06 E-value=0.063 Score=55.13 Aligned_cols=65 Identities=14% Similarity=0.044 Sum_probs=51.9
Q ss_pred CceeEEEEEE----EecCeEEEEEcC--CceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEec
Q 008167 489 PTDTEARIVK----IRSNGFIVFVPK--FGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVE 562 (575)
Q Consensus 489 ~~~~~g~V~~----v~~~g~~V~l~~--~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd 562 (575)
.+.+.|+|.. +.+.+++|.|.. -++||.++.++.. ++..|+.||+|+|.|..|+
T Consensus 131 GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi--------------------P~E~~~~GDrVkvyV~~V~ 190 (366)
T 1k0r_A 131 GEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV--------------------PGESYEHGNRLRCYVVGVT 190 (366)
T ss_dssp TCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC--------------------TTCCCCTTCEEEEEEEEEE
T ss_pred CCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC--------------------CCccCCCCCEEEEEEEEEe
Confidence 3789999999 999999999953 1499999987643 2467999999999999999
Q ss_pred CCCCCCceEEE
Q 008167 563 PQPNRPKLQLT 573 (575)
Q Consensus 563 ~~~~~~~i~l~ 573 (575)
.+....+|.||
T Consensus 191 ~~~kgpqI~LS 201 (366)
T 1k0r_A 191 RGAREPLITLS 201 (366)
T ss_dssp CCSSSCEEEEE
T ss_pred cCCCccEEEEE
Confidence 76545666665
No 41
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=92.41 E-value=0.2 Score=48.67 Aligned_cols=64 Identities=14% Similarity=0.050 Sum_probs=51.4
Q ss_pred CceeEEEEEE----EecCeEEEEEcCC---ceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEe
Q 008167 489 PTDTEARIVK----IRSNGFIVFVPKF---GIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVV 561 (575)
Q Consensus 489 ~~~~~g~V~~----v~~~g~~V~l~~~---gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~v 561 (575)
.+.+.|+|.. +.+..++|.|. . +.||.++.++.. .+..|+.||+|+|.|..|
T Consensus 8 GeIVtG~V~r~~~~v~~~~ViVdlG-~~~~k~EgiLP~~Eqi--------------------p~E~~~~GDrIkayV~~V 66 (251)
T 2asb_A 8 GEIVAGVIQRDSRANARGLVVVRIG-TETKASEGVIPAAEQV--------------------PGESYEHGNRLRCYVVGV 66 (251)
T ss_dssp TCEEEEEEECCHHHHHTTCEEEEEC-SSSSCEEEEECGGGSC--------------------TTCCCCTTCEEEEEEEEE
T ss_pred CCEEEEEEEEccccccCCeEEEEeC-CCCcceEEEEcHHHcC--------------------CCccCCCCCEEEEEEEEE
Confidence 4789999999 78888999985 3 489999877542 245799999999999999
Q ss_pred cCCCCCCceEEE
Q 008167 562 EPQPNRPKLQLT 573 (575)
Q Consensus 562 d~~~~~~~i~l~ 573 (575)
+......+|.||
T Consensus 67 ~~~~~gpqIiLS 78 (251)
T 2asb_A 67 TRGAREPLITLS 78 (251)
T ss_dssp ECCSSSCEEEEE
T ss_pred EcCCCCCEEEEE
Confidence 976445778776
No 42
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=91.23 E-value=0.55 Score=43.24 Aligned_cols=66 Identities=11% Similarity=0.042 Sum_probs=52.4
Q ss_pred ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCCCc
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 569 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~~~ 569 (575)
..+.|.|+++..++++|.|......|.+|+++.++.. ++....|++||-|..+|.+++.+ .+
T Consensus 9 DvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~g~~---------------k~~r~~l~~GDlV~ArV~~~~~~---~~ 70 (175)
T 2ja9_A 9 DFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNAS---------------KKNRPTLQVGDLVYARVCTAEKE---LE 70 (175)
T ss_dssp CEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTTCC---------------SSSCCCCCTTCEEEEEEEECCTT---SC
T ss_pred CEEEEEEEEEECcEEEEEECCCCccEEEEHHHCCchh---------------hhhhccCCCCCEEEEEEEEecCC---Cc
Confidence 6789999999999999999754588999998765320 24567899999999999998853 45
Q ss_pred eEEE
Q 008167 570 LQLT 573 (575)
Q Consensus 570 i~l~ 573 (575)
+.|+
T Consensus 71 ~~Lt 74 (175)
T 2ja9_A 71 AEIE 74 (175)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 5555
No 43
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=88.05 E-value=0.2 Score=41.79 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=30.5
Q ss_pred ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCC
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRG 523 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~ 523 (575)
+.+++.|..+.++|++|.|+. +++|+||+++++
T Consensus 63 e~V~g~V~~i~~fG~fv~l~~-~~eGlvhis~i~ 95 (101)
T 2bh8_A 63 DRVEGKIKSITDFGIFIGLDG-GIDGLVHLSDIS 95 (101)
T ss_dssp CEEEEEEEECCSEEEEECTTS-CEEEEEEEEEEE
T ss_pred CEEEEEEEEeCCcEEEEEcCC-CceEEEEHHHCc
Confidence 789999999999999999976 899999999875
No 44
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=87.81 E-value=0.77 Score=49.43 Aligned_cols=67 Identities=12% Similarity=-0.008 Sum_probs=47.7
Q ss_pred ceeEEEEEEEecC--eEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEe-eCCCeEEeeCcEEEEEEEEecC
Q 008167 490 TDTEARIVKIRSN--GFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVK-MDGNLSYSVLQTVNIHMEVVEP 563 (575)
Q Consensus 490 ~~~~g~V~~v~~~--g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g-~~~~~~~~lGD~V~V~V~~vd~ 563 (575)
..+.|.|.+|.++ |+||.+.. |-+|++|++++...+ +. +... ..+ .+....++.||.|.|+|.....
T Consensus 47 nIY~GkV~rv~p~~~aAFVdiG~-gk~gfLhisei~~~~---~~-~~~~--~~~~~~i~d~lk~Gq~VlVQV~Ke~~ 116 (517)
T 2bx2_L 47 NIYKGKITRIEPSLEAAFVDYGA-ERHGFLPLKEIAREY---FP-ANYS--AHGRPNIKDVLREGQEVIVQIDKEER 116 (517)
T ss_dssp CEEEEEEEEEETTTTEEEEESSS-SSCEEEEGGGSCGGG---CC----------CCCGGGTCCTTCEEEEEEEECCC
T ss_pred CEEEEEEEEeccCCceEEEEeCC-CcEEEEEHHHcChhh---hc-cccc--cccccchhhhccCCCEEEEEEEeecc
Confidence 5799999999998 99999985 999999999985331 11 1000 000 1123558999999999998664
No 45
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=87.65 E-value=1.2 Score=42.41 Aligned_cols=80 Identities=10% Similarity=0.074 Sum_probs=54.9
Q ss_pred ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecC---CcEEEEeeCCCeEEeeCcEEEEEEEEecCCCC
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDE---QQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPN 566 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~---~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~ 566 (575)
++.+|+|..+++.|+.+.+-. -+..+|+-..++.+| .|+.++ ....|+...+. ++|++|+.+|.+++...+
T Consensus 131 evL~G~V~~~s~~~Ig~~~~G-~Fn~~Ip~~~ip~~~--~f~~~~~~~~~~~wv~~~~~---~ig~~IRFrV~~~~~~~~ 204 (214)
T 2rf4_A 131 DVLEGYIFIQSASHIGLLIHD-AFNASIKKNNIPVDW--TFVHNDGNRSLGHWVDSNGE---PIDGKLRFTVRNVHTTGR 204 (214)
T ss_dssp CEEEEEECCCCSSCEEEEETT-TEEEEECSTTSCSSC--BCCCCSCC-CCCCCBCSSCC---BCCSEEEEEEEEEECCSS
T ss_pred CEEEEEEEEECCCcEEEEEeC-CEEEEEcHHHCCCcc--cccccccccCCCceEcCCCC---CCCCEEEEEEEEEEecCC
Confidence 678999999999999886533 356799999998875 244333 11344433332 369999999999997644
Q ss_pred CCceEEEeC
Q 008167 567 RPKLQLTLI 575 (575)
Q Consensus 567 ~~~i~l~l~ 575 (575)
--.|..+|+
T Consensus 205 ~lsI~Gsll 213 (214)
T 2rf4_A 205 VVSVDGTLI 213 (214)
T ss_dssp SCEEEEECC
T ss_pred EEEEEEEec
Confidence 555665553
No 46
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=85.67 E-value=0.43 Score=48.05 Aligned_cols=77 Identities=9% Similarity=0.046 Sum_probs=50.8
Q ss_pred ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCCCc
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 569 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~~~ 569 (575)
..+.|.|+++.+++++|.|.. ..++.++++.+..+. +.... .....+.+....|++||.|.++|.+++. ..+
T Consensus 97 DvViG~Vt~V~~~~a~VdI~s-~~~~~l~iS~v~f~g---g~iR~-~~~~D~~~m~~~l~vGDlV~ArVisv~~---~~~ 168 (308)
T 2nn6_H 97 DIVVGRITEVQQKRWKVETNS-RLDSVLLLSSMNLPG---GELRR-RSAEDELAMRGFLQEGDLISAEVQAVFS---DGA 168 (308)
T ss_dssp BCCCEEEEEEETTEEEEECSS-SSCEEEESSCCC-----------------CHHHHHHSCSSCEECCEEEEEET---TTE
T ss_pred CEEEEEEEEEeCceEEEEECC-CcCCceechhhcccc---ceeec-ccchhhhhhhccCCCCCEEEEEEEEcCC---CCC
Confidence 678999999999999999974 467889988764321 11000 0000011234679999999999999984 356
Q ss_pred eEEEe
Q 008167 570 LQLTL 574 (575)
Q Consensus 570 i~l~l 574 (575)
+.|+.
T Consensus 169 i~LSt 173 (308)
T 2nn6_H 169 VSLHT 173 (308)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 77653
No 47
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=64.19 E-value=14 Score=30.44 Aligned_cols=56 Identities=5% Similarity=-0.099 Sum_probs=37.5
Q ss_pred ceeEEEEEEE---ecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEec
Q 008167 490 TDTEARIVKI---RSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVE 562 (575)
Q Consensus 490 ~~~~g~V~~v---~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd 562 (575)
....|+|... +.+| |+.-++-|.++++|++.+..+. | ..+.+++|+.|+..|..+.
T Consensus 15 ~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~---~-------------~~~~l~~Ge~V~g~V~~i~ 73 (101)
T 2bh8_A 15 GKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGA---A-------------VRGNPQQGDRVEGKIKSIT 73 (101)
T ss_dssp -CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSS---C-------------CCCCCCTTCEEEEEEEECC
T ss_pred ccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCC---c-------------cccCCCCCCEEEEEEEEeC
Confidence 4568999877 4466 5554554699999999987542 1 0145677777777777654
No 48
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=59.44 E-value=6.2 Score=31.16 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=42.3
Q ss_pred ceeEEEEEEEecCe-EEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCCC
Q 008167 490 TDTEARIVKIRSNG-FIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRP 568 (575)
Q Consensus 490 ~~~~g~V~~v~~~g-~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~~ 568 (575)
-+.+|+|+...++| +.|.+.+ |..-..+++.. +. +..-.+.+||.|.|.+..-|.+ +-
T Consensus 14 ie~~G~Vik~l~n~~f~V~l~n-G~~~~c~i~GK-------~R-----------k~~I~Il~GD~V~ve~~~yd~~--kg 72 (79)
T 3i4o_A 14 IEVEGRVVEPLPNAMFRIELEN-GHKVLAHISGK-------MR-----------QHYIRILPEDRVVVELSPYDLS--RG 72 (79)
T ss_dssp SEEEEEEEEEETTTEEEEEETT-SCEEEEEECHH-------HH-----------HTTCCCCTTCEEEEEEETTEEE--EE
T ss_pred EEEEEEEEEEcCCCEEEEEeCC-CCEEEEEeCcc-------ee-----------cCCccCCCCCEEEEEECccCCC--cE
Confidence 56899999998665 5588875 75555665432 11 1234588999999998766543 66
Q ss_pred ceEEE
Q 008167 569 KLQLT 573 (575)
Q Consensus 569 ~i~l~ 573 (575)
+|.+.
T Consensus 73 rIi~R 77 (79)
T 3i4o_A 73 RIVYR 77 (79)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66654
No 49
>2bti_A Carbon storage regulator homolog; RMSA, CSRA, RNA binding protein; 2.0A {Yersinia enterocolitica} PDB: 1y00_A
Probab=52.81 E-value=23 Score=26.54 Aligned_cols=23 Identities=9% Similarity=-0.038 Sum_probs=20.4
Q ss_pred eeCCCeEEeeCcEEEEEEEEecC
Q 008167 541 KMDGNLSYSVLQTVNIHMEVVEP 563 (575)
Q Consensus 541 g~~~~~~~~lGD~V~V~V~~vd~ 563 (575)
.++.+..+.+||.|+|+|..++.
T Consensus 7 tRk~GE~I~Igd~I~I~Vl~i~g 29 (63)
T 2bti_A 7 TRRVGETLMIGDEVTVTVLGVKG 29 (63)
T ss_dssp EEETTCEEEETTTEEEEEEEEET
T ss_pred eccCCCeEEeCCCEEEEEEEEeC
Confidence 46788999999999999999984
No 50
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=51.72 E-value=23 Score=29.19 Aligned_cols=58 Identities=7% Similarity=0.006 Sum_probs=40.5
Q ss_pred ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeC-CCeEEeeCcEEEEE
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMD-GNLSYSVLQTVNIH 557 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~-~~~~~~lGD~V~V~ 557 (575)
....|+|+++.+.++.|.+.+ |-++.|..+++. |...|... ... ....++.||.|.|+
T Consensus 35 ~~~~AvV~~v~~~~~~v~~~~-g~~~~l~~~~~~--WA~~~~~~-------~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 35 DILAAVVLSATPGAVEAFRKN-GETIRITGDGLK--AAHRFLSN-------DPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp TCEEEEEEEEETTEEEEEETT-SCEEEECGGGGS--TTGGGTTT-------CTTTGGGSCCTTEEEEEE
T ss_pred CeEEEEEEEeCCCeEEEEEcC-CCeEEEcHHHCh--hhhhcccc-------cccchhccCCCCCEEEEE
Confidence 467899999999999999965 667777776654 21111110 112 34669999999998
No 51
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=48.39 E-value=28 Score=34.37 Aligned_cols=58 Identities=9% Similarity=-0.074 Sum_probs=45.9
Q ss_pred ceeEEEEEEEecCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecC
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEP 563 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~ 563 (575)
..+-|.|+++....+.|.|.. ...+.++..++.+.. ++....|++||-|..+|.+++.
T Consensus 129 DiVIG~Vt~v~~~~~~VdI~s-~~~a~L~~~~f~Gat---------------k~~r~~f~~GDlV~ArV~s~~~ 186 (289)
T 2nn6_G 129 DHVIGIVTAKSGDIFKVDVGG-SEPASLSYLSFEGAT---------------KRNRPNVQVGDLIYGQFVVANK 186 (289)
T ss_dssp EEEEEEEEEEETTEEEEECSS-SSCCCEESCSSSCCS---------------SCSSSSSCTTCEEEEEEEECCT
T ss_pred CEEEEEEEEEeCcEEEEEECC-CceeEEehhhcCcch---------------hhhhhhcCCCCEEEEEEEEcCC
Confidence 578999999999999999975 567888887665320 1345679999999999999875
No 52
>2jpp_A Translational repressor; RNA recognition, protein/RNA, CSRA, RSMA, shine-dalgarno; NMR {Pseudomonas fluorescens}
Probab=47.42 E-value=25 Score=26.89 Aligned_cols=22 Identities=14% Similarity=0.015 Sum_probs=19.8
Q ss_pred eCCCeEEeeCcEEEEEEEEecC
Q 008167 542 MDGNLSYSVLQTVNIHMEVVEP 563 (575)
Q Consensus 542 ~~~~~~~~lGD~V~V~V~~vd~ 563 (575)
++.+..+.+||.|+|+|.+++.
T Consensus 6 Rk~GEsI~IGd~I~ItVl~v~g 27 (70)
T 2jpp_A 6 RKVGESINIGDDITITILGVSG 27 (70)
T ss_dssp EETTCEEEETTTEEEEEEEEET
T ss_pred ccCCCeEEECCCEEEEEEEEeC
Confidence 6778999999999999999984
No 53
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.73 E-value=36 Score=28.59 Aligned_cols=63 Identities=10% Similarity=0.043 Sum_probs=42.9
Q ss_pred ceeEEEEEEEecCeE-EEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCCC
Q 008167 490 TDTEARIVKIRSNGF-IVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRP 568 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~-~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~~ 568 (575)
....|.|+....++. .|.+++ |.+-++|++..- +..-.+..||.|.|.+..-+. ..+-
T Consensus 15 ge~~g~V~~~lgn~~f~V~l~n-G~~~la~i~GK~-------------------Rk~IwI~~GD~VlVe~~~yd~-~~kg 73 (111)
T 2dgy_A 15 QQQIVRVLRTPGNNLHEVETAQ-GQRFLVSMPSKY-------------------RKNIWIKRGDFLIVDPIEEGE-KVKA 73 (111)
T ss_dssp SCEEEEEEECCSSSEEEEECTT-SCEEEEECCTTC-------------------CSCCCCCSSCEEEEEECSSCS-SCCE
T ss_pred CeEEEEEEEeCCCCEEEEEeCC-CCEEEEEechhh-------------------cccEEEcCCCEEEEEecccCC-cceE
Confidence 568899999887765 588875 999888886432 123457889999999764331 2355
Q ss_pred ceEEE
Q 008167 569 KLQLT 573 (575)
Q Consensus 569 ~i~l~ 573 (575)
+|...
T Consensus 74 ~Iv~r 78 (111)
T 2dgy_A 74 EISFV 78 (111)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66543
No 54
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=44.10 E-value=34 Score=30.04 Aligned_cols=63 Identities=11% Similarity=0.151 Sum_probs=44.8
Q ss_pred ceeEEEEEEEecCeE-EEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecCCCCCC
Q 008167 490 TDTEARIVKIRSNGF-IVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRP 568 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~-~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~~~~~~ 568 (575)
....|.|+....++. .|.+++ |..-++|++..- +..-.+..||.|.|.+..-+ ..+-
T Consensus 31 ge~~g~V~e~lgn~~f~V~l~n-G~~~La~I~GKm-------------------Rk~IwI~~GD~VlVe~~~yd--~~KG 88 (143)
T 1d7q_A 31 GQEYAQVIKMLGNGRLEAMCFD-GVKRLCHIRGKL-------------------RKKVWINTSDIILVGLRDYQ--DNKA 88 (143)
T ss_dssp TEEEEEEEEECSSSEEEEEETT-TEEEEEECCSGG-------------------GGSCCCCTTCEEEEECSSSS--SSCC
T ss_pred CEEEEEEEEEcCCCEEEEEeCC-CCEEEEEecccc-------------------eeeEEecCCCEEEEeeccCC--CCeE
Confidence 568999999988775 588876 999888886431 12345789999999886444 3467
Q ss_pred ceEEEe
Q 008167 569 KLQLTL 574 (575)
Q Consensus 569 ~i~l~l 574 (575)
+|.+.+
T Consensus 89 ~Ii~r~ 94 (143)
T 1d7q_A 89 DVILKY 94 (143)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 776553
No 55
>1vpz_A Carbon storage regulator homolog; CSRA-like fold, structural genomics, joint center for struct genomics, JCSG; HET: MSE; 2.05A {Pseudomonas aeruginosa} SCOP: b.151.1.1
Probab=41.22 E-value=36 Score=26.24 Aligned_cols=23 Identities=13% Similarity=-0.032 Sum_probs=20.5
Q ss_pred eeCCCeEEeeCcEEEEEEEEecC
Q 008167 541 KMDGNLSYSVLQTVNIHMEVVEP 563 (575)
Q Consensus 541 g~~~~~~~~lGD~V~V~V~~vd~ 563 (575)
.++.+..+.+||.|+|+|..++-
T Consensus 17 tRK~GEsI~IGddI~ItVl~i~g 39 (73)
T 1vpz_A 17 TRRVGETLMVGDDVTVTVLGVKG 39 (73)
T ss_dssp EEETTCEEEETTTEEEEEEEEET
T ss_pred EccCCCEEEeCCCEEEEEEEEeC
Confidence 46788999999999999999984
No 56
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=36.55 E-value=30 Score=27.87 Aligned_cols=59 Identities=10% Similarity=0.017 Sum_probs=36.4
Q ss_pred ceeEEEEEEEecCeEEEEEcCC-ceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEecC
Q 008167 490 TDTEARIVKIRSNGFIVFVPKF-GIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEP 563 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~-gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~vd~ 563 (575)
...+|+|. +.++-+.|+|++| |+|+.|- . + +.+...++. +-.+ ==+|-.|+|+|..+|-
T Consensus 34 ~VtkGiVy-~kd~~fyV~L~dY~glEaii~-d-----Y---vnv~~dr~~----klkk-kLVGKtIkVqVIRvD~ 93 (102)
T 1jjg_A 34 SVHEGIVY-FKDGIFKVRLLGYEGHECILL-D-----Y---LNYRQDTLD----RLKE-RLVGRVIKTRVVRADG 93 (102)
T ss_dssp CEEEEEEE-EETTEEEEECTTTSSCEEEEC-T-----T---CCSSCCCCC----HHHH-HHTTCEEEEEEEEECS
T ss_pred ceEeeEEE-EeCCEEEEEecCCCCceeeee-h-----h---hhhhHHHHH----HHHH-HhcCceEEEEEEEecc
Confidence 45667665 4567788999999 9999883 2 2 223222110 0011 1367889999998874
No 57
>1t3o_A Carbon storage regulator; CSRA, CSRB, CSRC, mostly beta strands, RNA binding protein, beta sheet surface; NMR {Bacillus subtilis}
Probab=33.11 E-value=32 Score=27.93 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=22.2
Q ss_pred EEEEeeCCCeEEeeCcEEEEEEEEecC
Q 008167 537 QKIVKMDGNLSYSVLQTVNIHMEVVEP 563 (575)
Q Consensus 537 ~~l~g~~~~~~~~lGD~V~V~V~~vd~ 563 (575)
|-+..++.+..+.+||.|+|+|..++.
T Consensus 22 MLVLtRK~GEsI~IGddI~ItVl~i~g 48 (95)
T 1t3o_A 22 MLVLSRKINEAIQIGADIEVKVIAVEG 48 (95)
T ss_dssp EEEEECTTCCCEEETTTEEECCCEECS
T ss_pred eEEEEccCCCeEEECCCEEEEEEEEeC
Confidence 333457889999999999999999884
No 58
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=32.30 E-value=65 Score=27.68 Aligned_cols=56 Identities=9% Similarity=0.013 Sum_probs=34.8
Q ss_pred ceeEEEEEEEecCeEEEEEcCC-ceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEE
Q 008167 490 TDTEARIVKIRSNGFIVFVPKF-GIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHME 559 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~-gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~ 559 (575)
.-+.|.|.++.++++.|...+. ..+-.|+++++---. .......|++||+|+|.-.
T Consensus 16 ~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP--------------~~~~~~~f~~gd~VEV~~~ 72 (128)
T 3h8z_A 16 AFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPP--------------PADYNKEITEGDEVEVYSR 72 (128)
T ss_dssp CEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCC--------------CC----CCCTTCEEEEEEC
T ss_pred CEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCC--------------CcccccCCCCCCEEEEEec
Confidence 4689999999999999998642 224556655432110 0012356889999998654
No 59
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=29.79 E-value=62 Score=25.42 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=18.2
Q ss_pred EEEEEEEEcCCCcEEEEEEEEE
Q 008167 203 AFSVIWELTPEAEIISTRYTKS 224 (575)
Q Consensus 203 a~s~~~~i~~~G~i~~~~~~~s 224 (575)
.+.+.+.|+++|+|.+.++.+|
T Consensus 26 ~V~v~~~i~~~G~v~~~~v~~s 47 (90)
T 1u07_A 26 QVKVKFDVTPDGRVDNVQILSA 47 (90)
T ss_dssp EEEEEEEECTTSCEEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEec
Confidence 3667889999999999987665
No 60
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=26.72 E-value=1.3e+02 Score=23.84 Aligned_cols=34 Identities=6% Similarity=-0.169 Sum_probs=23.9
Q ss_pred ceeEEEEEEEecCeEEEEEcCCc-eEEEEEccCCCC
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFG-IEGPVYLTPRGQ 524 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~g-leg~v~~~~l~~ 524 (575)
....|+|.-.. .|+-..-|+-| -+-++|++.+..
T Consensus 17 ~~~~G~Vkwf~-KGfGFI~~ddgg~DVFvH~s~i~~ 51 (89)
T 1wfq_A 17 LRETGVIEKLL-TSYGFIQCSERQARLFFHCSQYNG 51 (89)
T ss_dssp CEEEEEEEEEC-SSEEEEEETTTTEEEEEETTTCSS
T ss_pred cccceEEEEEe-CCeeEEecCCCCccEEEEhHHhhC
Confidence 35679998875 66644444434 899999998864
No 61
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=26.57 E-value=1.8e+02 Score=21.40 Aligned_cols=51 Identities=14% Similarity=0.058 Sum_probs=35.1
Q ss_pred EEEEEEEe-cCeEEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEEEe
Q 008167 493 EARIVKIR-SNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVV 561 (575)
Q Consensus 493 ~g~V~~v~-~~g~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~~v 561 (575)
.|+|.... ..|+-..-|+-|-+-++|.+.+..+ +-+.++.||+|+..+..-
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~------------------g~~~l~~G~~V~f~~~~~ 54 (66)
T 1c9o_A 3 RGKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQGE------------------GFKTLEEGQEVSFEIVQG 54 (66)
T ss_dssp EEEEEEEETTTTEEEEEETTEEEEEEEGGGBCSS------------------SCCCCCTTCEEEEEEEEE
T ss_pred ceEEEEEECCCCeEEEecCCCccEEEEHHHcccc------------------CCCCCCCCCEEEEEEEEC
Confidence 57887775 3455444465578899999988643 124578888888887653
No 62
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=26.34 E-value=1.4e+02 Score=21.52 Aligned_cols=34 Identities=18% Similarity=0.075 Sum_probs=29.2
Q ss_pred ceeEEEEEEEec--CeEEEEEcCCceEEEEEccCCC
Q 008167 490 TDTEARIVKIRS--NGFIVFVPKFGIEGPVYLTPRG 523 (575)
Q Consensus 490 ~~~~g~V~~v~~--~g~~V~l~~~gleg~v~~~~l~ 523 (575)
..+.|+|.++.+ ..+.|...+||=...|+++++.
T Consensus 19 ~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr 54 (59)
T 1mhn_A 19 CIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLL 54 (59)
T ss_dssp CEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCB
T ss_pred CEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHee
Confidence 468999999985 6788999999999999988764
No 63
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=25.22 E-value=73 Score=25.82 Aligned_cols=22 Identities=0% Similarity=0.158 Sum_probs=18.1
Q ss_pred EEEEEEEEcCCCcEEEEEEEEE
Q 008167 203 AFSVIWELTPEAEIISTRYTKS 224 (575)
Q Consensus 203 a~s~~~~i~~~G~i~~~~~~~s 224 (575)
.+.+.+.||++|+|.+.++.+|
T Consensus 41 ~V~v~f~I~~~G~v~~~~v~~s 62 (106)
T 2k9k_A 41 FVTLSFTIDTTGKAVDINVVDA 62 (106)
T ss_dssp EEEEEEEEETTTEEEEEEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEEEc
Confidence 3667889999999999887655
No 64
>3mqp_B Phorbol-12-myristate-13-acetate-induced protein 1; BCL-2 family, structural genomics, PSI-2, protein structure initiative; 2.24A {Homo sapiens} PDB: 2nla_B
Probab=24.61 E-value=22 Score=20.97 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=10.7
Q ss_pred ccccchhHHHHHH
Q 008167 423 PIRRYADVVVHRL 435 (575)
Q Consensus 423 PIRRY~DlvvHr~ 435 (575)
-+||+.|.++-||
T Consensus 10 qlrr~gdkln~rq 22 (25)
T 3mqp_B 10 QLRRFGDKLNFRQ 22 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHH
Confidence 4789999998876
No 65
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=23.55 E-value=87 Score=34.49 Aligned_cols=56 Identities=11% Similarity=0.087 Sum_probs=42.3
Q ss_pred CCCccEEEEEeCCCCCCceEecCCccCc-CCCCEEEEEEeecCCCCCCcceEEEEeecCCCC
Q 008167 7 SGSVAHALFVPKDRRIPKIRIQTRQLGN-LLDKRIIVAVDSWDCQSRYPFGHYVRVIGEIGD 67 (575)
Q Consensus 7 ~~~~~~~~~~P~d~r~p~i~i~~~~~~~-~~~~~~~v~i~~w~~~~~~p~g~i~~~lG~~~~ 67 (575)
...+++++++|.+. ..|.|+..+... ..|++|+|+|..- . ..|.|+|+++|.....
T Consensus 28 ~~~~GfgF~~~d~~--~difi~~~~~~~a~~GD~V~v~i~~~--~-~~~eg~v~~iler~~~ 84 (644)
T 2id0_A 28 ATEKGFGFLEVDAQ--KSYFIPPPQMKKVMHGDRIIAVIHSE--K-ERESAEPEELVEPFLT 84 (644)
T ss_dssp CCSSSCEEEECSSS--CEEEECHHHHTTSCTTCEEEEEEECC--S-SSCEEEEEEEEECSCS
T ss_pred EecCCcEEEEECCC--CCEEECHHHHhcCCCCCEEEEEEecC--C-CCeEEEEEEEEecCCC
Confidence 34567899999763 479998876644 5799999999753 2 3489999999987654
No 66
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=22.64 E-value=1.7e+02 Score=23.54 Aligned_cols=49 Identities=6% Similarity=-0.106 Sum_probs=33.4
Q ss_pred ceeEEEEEEEecCeEEEEEcCCc-eEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEE
Q 008167 490 TDTEARIVKIRSNGFIVFVPKFG-IEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHM 558 (575)
Q Consensus 490 ~~~~g~V~~v~~~g~~V~l~~~g-leg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V 558 (575)
....|+|.-. ..|+-..-++-| -+-++|++.+..+ .+.++.||+|+..+
T Consensus 17 ~~~~G~Vkwf-~KGfGFI~~ddg~~DvFvH~s~i~~~-------------------~~~L~~G~~V~F~v 66 (97)
T 2ytx_A 17 ARCQGVVCAM-KEAFGFIERGDVVKEIFFHYSEFKGD-------------------LETLQPGDDVEFTI 66 (97)
T ss_dssp CCEEEEECCC-CSSEEEEECSSSCCCEEEETTTCCSC-------------------TTSCCSCCEEEEEE
T ss_pred cceeEEEEEE-eCCceEEecCCCCceEEEEehHhccc-------------------cCCCCCCCEEEEEE
Confidence 4568998877 667754445444 7899999988643 13466777777666
No 67
>2jm6_A NOXA; apoptosis, BCL-2, helical bundle, BH3-only; NMR {Mus musculus}
Probab=20.64 E-value=29 Score=20.82 Aligned_cols=14 Identities=36% Similarity=0.361 Sum_probs=11.6
Q ss_pred ccccchhHHHHHHH
Q 008167 423 PIRRYADVVVHRLL 436 (575)
Q Consensus 423 PIRRY~DlvvHr~L 436 (575)
-+||+.|.++-||=
T Consensus 10 qlr~~gdkln~rqk 23 (27)
T 2jm6_A 10 QLRRIGDKVNLRQK 23 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHH
Confidence 57999999998873
No 68
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=20.17 E-value=1.1e+02 Score=23.14 Aligned_cols=50 Identities=10% Similarity=0.152 Sum_probs=31.2
Q ss_pred eeEEEEEEEecCe-EEEEEcCCceEEEEEccCCCCCCCCcceecCCcEEEEeeCCCeEEeeCcEEEEEEE
Q 008167 491 DTEARIVKIRSNG-FIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHME 559 (575)
Q Consensus 491 ~~~g~V~~v~~~g-~~V~l~~~gleg~v~~~~l~~d~~~~~~~d~~~~~l~g~~~~~~~~lGD~V~V~V~ 559 (575)
.+.|.|+....+| +.|.+++ |-.-..+++.. +. +..-...+||.|.|.+.
T Consensus 7 ~~~G~Vi~~lg~~~y~V~~~~-g~~~~~~i~Gk-------~R-----------k~~i~i~vGD~V~ve~~ 57 (71)
T 1ah9_A 7 EMQGTVLETLPNTMFRVELEN-GHVVTAHISGK-------MR-----------KNYIRILTGDKVTVELT 57 (71)
T ss_dssp ECCEEEEEECSSSEEEEEETT-SCEEEEEECSS-------GG-----------GTTCCCCTTCEECCEEC
T ss_pred EEEEEEEEEeCCcEEEEEECC-CCEEEEEEcce-------Ee-----------ccCccCCCCCEEEEEEe
Confidence 4579999988855 5577765 54444554422 11 12234569999998864
Done!