Query 008168
Match_columns 575
No_of_seqs 296 out of 2034
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 20:20:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02967 kinase 100.0 5.1E-97 1E-101 811.8 45.5 560 1-575 1-567 (581)
2 PLN02543 pfkB-type carbohydrat 100.0 1.4E-59 3E-64 511.6 39.5 363 192-555 113-489 (496)
3 KOG2855 Ribokinase [Carbohydra 100.0 9.7E-45 2.1E-49 368.9 29.9 322 197-555 2-326 (330)
4 PLN02323 probable fructokinase 100.0 3.4E-44 7.5E-49 375.9 34.8 320 202-556 8-328 (330)
5 PRK11142 ribokinase; Provision 100.0 2.7E-42 5.8E-47 357.0 32.9 301 204-554 2-304 (306)
6 PLN02813 pfkB-type carbohydrat 100.0 4.8E-42 1E-46 371.1 34.6 323 202-561 67-413 (426)
7 PTZ00292 ribokinase; Provision 100.0 8E-42 1.7E-46 357.3 33.6 308 202-554 13-325 (326)
8 PRK09434 aminoimidazole ribosi 100.0 1E-41 2.2E-46 352.8 33.0 301 204-550 2-304 (304)
9 PLN02341 pfkB-type carbohydrat 100.0 4.4E-41 9.5E-46 368.2 34.3 321 202-557 70-411 (470)
10 COG0524 RbsK Sugar kinases, ri 100.0 7.6E-41 1.6E-45 347.4 34.2 309 206-555 1-309 (311)
11 cd01168 adenosine_kinase Adeno 100.0 4.3E-41 9.4E-46 349.5 30.1 300 204-541 1-311 (312)
12 cd01167 bac_FRK Fructokinases 100.0 2E-40 4.3E-45 340.8 31.7 286 206-539 1-294 (295)
13 cd01174 ribokinase Ribokinase 100.0 3.7E-40 8.1E-45 338.3 32.5 290 206-545 1-292 (292)
14 PRK15074 inosine/guanosine kin 100.0 2.3E-40 5E-45 356.7 32.3 322 202-548 31-425 (434)
15 PRK09850 pseudouridine kinase; 100.0 6.2E-40 1.3E-44 341.4 32.3 305 202-556 2-309 (313)
16 cd01944 YegV_kinase_like YegV- 100.0 1.7E-39 3.7E-44 333.6 31.9 287 206-538 1-289 (289)
17 cd01166 KdgK 2-keto-3-deoxyglu 100.0 2.8E-39 6E-44 331.9 31.5 291 206-539 1-293 (294)
18 PTZ00247 adenosine kinase; Pro 100.0 1.3E-39 2.9E-44 343.6 29.7 308 202-540 3-335 (345)
19 PF00294 PfkB: pfkB family car 100.0 2.9E-40 6.2E-45 339.7 23.4 298 204-545 1-300 (301)
20 PLN02379 pfkB-type carbohydrat 100.0 3.9E-39 8.5E-44 342.6 32.3 316 202-553 17-355 (367)
21 cd01945 ribokinase_group_B Rib 100.0 2E-38 4.3E-43 324.4 30.5 283 206-545 1-284 (284)
22 cd01942 ribokinase_group_A Rib 100.0 3.3E-38 7.1E-43 321.8 30.4 275 206-539 1-278 (279)
23 TIGR02152 D_ribokin_bact ribok 100.0 1.7E-37 3.7E-42 319.2 32.1 291 211-550 1-293 (293)
24 PRK09954 putative kinase; Prov 100.0 1.6E-37 3.5E-42 329.9 31.7 300 205-554 58-360 (362)
25 cd01940 Fructoselysine_kinase_ 100.0 3.2E-37 7E-42 312.5 29.0 262 206-539 1-263 (264)
26 TIGR02198 rfaE_dom_I rfaE bifu 100.0 3.3E-36 7.2E-41 312.9 31.8 301 204-554 7-315 (315)
27 TIGR03828 pfkB 1-phosphofructo 100.0 4.1E-36 8.9E-41 310.3 32.0 292 209-555 4-301 (304)
28 cd01172 RfaE_like RfaE encodes 100.0 2.5E-36 5.3E-41 312.0 28.9 290 206-543 1-298 (304)
29 cd01939 Ketohexokinase Ketohex 100.0 2.3E-36 5E-41 310.9 28.4 278 206-539 1-289 (290)
30 cd01947 Guanosine_kinase_like 100.0 4.3E-36 9.4E-41 304.6 29.9 264 206-539 1-264 (265)
31 cd01943 MAK32 MAK32 kinase. M 100.0 1.6E-36 3.6E-41 318.1 23.4 285 206-539 1-304 (328)
32 PLN02548 adenosine kinase 100.0 1.6E-35 3.6E-40 310.6 29.9 273 239-541 40-325 (332)
33 PRK09813 fructoselysine 6-kina 100.0 8.6E-36 1.9E-40 302.1 26.5 259 205-539 1-259 (260)
34 cd01941 YeiC_kinase_like YeiC- 100.0 1.3E-35 2.8E-40 304.0 27.9 282 207-536 2-288 (288)
35 PRK13508 tagatose-6-phosphate 100.0 6.5E-35 1.4E-39 303.1 31.7 296 206-555 2-303 (309)
36 PRK09513 fruK 1-phosphofructok 100.0 2E-34 4.3E-39 299.9 33.1 294 207-555 5-305 (312)
37 TIGR03168 1-PFK hexose kinase, 100.0 1.8E-34 3.8E-39 298.5 31.0 289 212-555 7-301 (303)
38 PRK10294 6-phosphofructokinase 100.0 2.6E-34 5.6E-39 298.6 31.2 296 207-555 5-306 (309)
39 TIGR01231 lacC tagatose-6-phos 100.0 3.8E-34 8.3E-39 297.3 30.5 294 209-555 4-303 (309)
40 PRK11316 bifunctional heptose 100.0 6.1E-34 1.3E-38 312.8 31.4 301 203-555 9-314 (473)
41 cd01164 FruK_PfkB_like 1-phosp 100.0 1E-33 2.2E-38 290.9 30.1 279 207-539 3-288 (289)
42 PLN02630 pfkB-type carbohydrat 100.0 2.3E-32 5E-37 286.8 29.4 273 202-556 9-292 (335)
43 cd01937 ribokinase_group_D Rib 100.0 2.9E-32 6.2E-37 274.9 27.4 254 206-535 1-254 (254)
44 cd01946 ribokinase_group_C Rib 100.0 2.7E-32 5.8E-37 278.9 27.1 274 206-540 1-276 (277)
45 COG1105 FruK Fructose-1-phosph 100.0 1.8E-31 3.9E-36 271.9 29.8 271 240-555 25-303 (310)
46 KOG2854 Possible pfkB family c 100.0 9.4E-31 2E-35 263.5 23.1 307 207-545 9-338 (343)
47 COG2870 RfaE ADP-heptose synth 100.0 5.3E-27 1.1E-31 240.9 24.0 303 203-557 9-315 (467)
48 KOG2947 Carbohydrate kinase [C 99.9 2.4E-25 5.2E-30 214.6 22.7 280 203-539 3-298 (308)
49 cd00287 ribokinase_pfkB_like r 99.9 4E-25 8.6E-30 213.1 21.3 195 206-507 1-196 (196)
50 cd01173 pyridoxal_pyridoxamine 99.7 1.3E-16 2.8E-21 161.3 18.5 169 342-535 71-250 (254)
51 PRK12413 phosphomethylpyrimidi 99.7 6.6E-16 1.4E-20 156.2 19.4 152 361-536 83-242 (253)
52 PRK05756 pyridoxamine kinase; 99.7 4.5E-16 9.7E-21 160.5 18.1 170 341-536 72-255 (286)
53 PRK07105 pyridoxamine kinase; 99.7 1.2E-15 2.6E-20 157.2 17.5 174 343-539 75-258 (284)
54 TIGR00687 pyridox_kin pyridoxa 99.7 1.3E-15 2.8E-20 157.0 17.5 165 341-531 72-251 (286)
55 TIGR00097 HMP-P_kinase phospho 99.6 6.8E-15 1.5E-19 149.1 18.8 164 343-536 67-240 (254)
56 PRK08176 pdxK pyridoxal-pyrido 99.6 5.5E-15 1.2E-19 152.1 18.3 167 341-535 86-265 (281)
57 cd01169 HMPP_kinase 4-amino-5- 99.6 9.1E-15 2E-19 146.6 19.3 164 343-535 68-240 (242)
58 PRK12412 pyridoxal kinase; Rev 99.6 8.1E-15 1.8E-19 149.8 18.0 164 344-536 73-246 (268)
59 PRK06427 bifunctional hydroxy- 99.6 1.1E-14 2.3E-19 148.5 18.3 165 343-536 73-248 (266)
60 PRK08573 phosphomethylpyrimidi 99.6 4.9E-15 1.1E-19 162.0 16.7 152 359-535 82-243 (448)
61 KOG3009 Predicted carbohydrate 99.6 5.3E-14 1.1E-18 146.8 14.7 251 207-535 343-599 (614)
62 PRK12616 pyridoxal kinase; Rev 99.5 2E-13 4.4E-18 139.7 18.2 165 343-536 74-249 (270)
63 PTZ00344 pyridoxal kinase; Pro 99.4 8.4E-12 1.8E-16 129.5 18.5 167 344-536 78-258 (296)
64 PLN02898 HMP-P kinase/thiamin- 99.3 4.2E-11 9E-16 133.0 20.1 164 343-536 78-253 (502)
65 PTZ00347 phosphomethylpyrimidi 99.3 2.3E-11 5E-16 135.2 17.5 151 360-536 311-478 (504)
66 PRK14713 multifunctional hydro 99.2 1.2E-10 2.6E-15 130.2 16.3 158 344-531 99-267 (530)
67 PLN02978 pyridoxal kinase 99.2 5.5E-10 1.2E-14 116.5 19.8 167 344-536 87-267 (308)
68 cd01171 YXKO-related B.subtili 99.2 3.3E-10 7.2E-15 114.7 16.7 164 340-538 74-237 (254)
69 PF08543 Phos_pyr_kin: Phospho 99.2 2E-10 4.4E-15 116.0 14.6 164 343-535 60-233 (246)
70 PRK09517 multifunctional thiam 99.2 3.3E-10 7.3E-15 131.3 16.0 162 344-536 311-484 (755)
71 cd01170 THZ_kinase 4-methyl-5- 99.1 1.8E-09 4E-14 108.8 17.9 175 338-535 44-221 (242)
72 COG2240 PdxK Pyridoxal/pyridox 99.1 2E-09 4.4E-14 108.7 16.5 171 340-535 70-249 (281)
73 TIGR00196 yjeF_cterm yjeF C-te 99.1 4.5E-09 9.8E-14 107.7 16.7 175 339-553 88-266 (272)
74 COG0351 ThiD Hydroxymethylpyri 99.0 6.7E-09 1.4E-13 104.4 16.0 151 359-535 83-244 (263)
75 PRK09355 hydroxyethylthiazole 98.7 4.6E-07 9.9E-12 92.6 17.6 172 339-534 50-224 (263)
76 PTZ00493 phosphomethylpyrimidi 98.7 7.3E-07 1.6E-11 93.1 17.4 140 376-536 107-285 (321)
77 TIGR00694 thiM hydroxyethylthi 98.5 3.4E-06 7.3E-11 85.5 15.4 171 339-533 45-218 (249)
78 KOG2599 Pyridoxal/pyridoxine/p 98.3 2.6E-05 5.7E-10 77.8 14.9 167 341-530 79-257 (308)
79 PRK03979 ADP-specific phosphof 97.7 0.0016 3.4E-08 71.1 17.8 164 247-420 98-306 (463)
80 KOG2598 Phosphomethylpyrimidin 97.5 0.0013 2.9E-08 69.7 13.8 170 343-535 92-282 (523)
81 PRK14039 ADP-dependent glucoki 97.5 0.0053 1.1E-07 66.8 18.3 169 244-421 84-295 (453)
82 PF04587 ADP_PFK_GK: ADP-speci 97.2 0.0084 1.8E-07 65.8 15.4 163 249-420 93-292 (444)
83 TIGR02045 P_fruct_ADP ADP-spec 97.1 0.033 7.1E-07 60.7 18.9 163 248-419 86-291 (446)
84 PF02110 HK: Hydroxyethylthiaz 97.1 0.051 1.1E-06 54.9 18.6 154 339-509 45-201 (246)
85 PRK14038 ADP-dependent glucoki 97.0 0.078 1.7E-06 57.9 20.3 245 247-554 106-388 (453)
86 PRK10565 putative carbohydrate 96.9 0.027 5.8E-07 63.1 16.8 149 341-529 318-468 (508)
87 KOG3974 Predicted sugar kinase 96.8 0.016 3.5E-07 58.1 12.0 172 338-538 96-269 (306)
88 PF01256 Carb_kinase: Carbohyd 96.4 0.12 2.5E-06 52.4 15.2 152 339-531 63-217 (242)
89 COG2145 ThiM Hydroxyethylthiaz 96.3 0.2 4.3E-06 50.6 16.2 79 339-422 51-131 (265)
90 cd01938 ADPGK_ADPPFK ADP-depen 96.0 0.062 1.4E-06 58.9 11.7 167 245-420 100-286 (445)
91 COG0063 Predicted sugar kinase 94.7 0.83 1.8E-05 47.3 14.5 153 341-528 99-252 (284)
92 PLN02967 kinase 82.0 1.7 3.6E-05 49.5 4.6 32 268-301 236-267 (581)
93 PRK10076 pyruvate formate lyas 79.3 14 0.0003 36.6 9.6 68 344-422 39-112 (213)
94 KOG4184 Predicted sugar kinase 72.3 9.5 0.00021 40.3 6.4 165 244-421 136-318 (478)
95 COG4809 Archaeal ADP-dependent 70.2 1.4E+02 0.0031 32.3 14.6 79 340-422 222-310 (466)
96 PF03154 Atrophin-1: Atrophin- 64.9 10 0.00023 44.8 5.5 22 487-509 540-561 (982)
97 KOG1832 HIV-1 Vpr-binding prot 62.0 4.3 9.4E-05 47.4 1.7 7 59-65 1276-1282(1516)
98 COG0136 Asd Aspartate-semialde 59.8 2.4E+02 0.0052 30.0 14.4 94 266-382 2-97 (334)
99 PLN02543 pfkB-type carbohydrat 55.5 13 0.00029 41.6 4.2 32 53-90 47-78 (496)
100 PRK06702 O-acetylhomoserine am 53.6 60 0.0013 35.8 8.8 126 245-413 78-207 (432)
101 TIGR00334 5S_RNA_mat_M5 ribonu 52.9 47 0.001 31.9 6.8 64 343-416 22-85 (174)
102 PF01118 Semialdhyde_dh: Semia 51.2 34 0.00074 30.3 5.4 96 271-385 2-100 (121)
103 COG1180 PflA Pyruvate-formate 49.6 1.5E+02 0.0034 30.1 10.6 71 343-423 83-158 (260)
104 PRK15452 putative protease; Pr 47.3 1.7E+02 0.0038 32.3 11.2 79 339-418 19-104 (443)
105 PRK15447 putative protease; Pr 46.4 2.4E+02 0.0053 29.3 11.7 73 343-419 28-104 (301)
106 KOG2141 Protein involved in hi 45.6 8 0.00017 44.3 0.5 23 133-155 185-207 (822)
107 PF10278 Med19: Mediator of RN 42.4 15 0.00033 35.3 1.7 15 23-37 80-94 (178)
108 PRK09028 cystathionine beta-ly 41.6 1.5E+02 0.0034 32.1 9.6 43 343-386 146-188 (394)
109 KOG3226 DNA repair protein [Re 41.4 55 0.0012 35.0 5.7 50 3-52 141-197 (508)
110 PRK05967 cystathionine beta-ly 39.5 2.4E+02 0.0053 30.6 10.7 44 343-387 149-192 (395)
111 TIGR03609 S_layer_CsaB polysac 34.5 2.1E+02 0.0046 29.2 9.0 73 338-412 59-135 (298)
112 PF09026 CENP-B_dimeris: Centr 33.0 14 0.00031 31.7 0.0 7 207-213 43-49 (101)
113 COG0206 FtsZ Cell division GTP 32.3 3.5E+02 0.0075 28.9 10.1 148 245-417 14-172 (338)
114 TIGR02494 PFLE_PFLC glycyl-rad 32.2 3E+02 0.0065 28.2 9.7 66 345-421 127-198 (295)
115 TIGR02826 RNR_activ_nrdG3 anae 32.0 1.7E+02 0.0036 27.2 6.9 58 345-415 63-120 (147)
116 PRK08133 O-succinylhomoserine 31.4 2.5E+02 0.0053 30.3 9.2 21 363-383 165-185 (390)
117 PF05077 DUF678: Protein of un 29.3 24 0.00052 28.7 0.7 12 143-154 7-18 (74)
118 TIGR01745 asd_gamma aspartate- 29.1 7.6E+02 0.016 26.7 13.1 94 267-383 2-98 (366)
119 PF01212 Beta_elim_lyase: Beta 28.5 88 0.0019 32.5 4.9 80 329-411 104-192 (290)
120 PRK08114 cystathionine beta-ly 28.5 3.1E+02 0.0067 29.8 9.3 109 244-387 78-192 (395)
121 PRK05968 hypothetical protein; 28.2 6.1E+02 0.013 27.2 11.6 42 342-384 146-187 (389)
122 PRK09522 bifunctional glutamin 28.1 4E+02 0.0086 30.3 10.4 36 257-294 293-329 (531)
123 PRK07050 cystathionine beta-ly 28.0 4.7E+02 0.01 28.2 10.6 43 343-386 150-192 (394)
124 TIGR01328 met_gam_lyase methio 27.7 3.2E+02 0.007 29.4 9.3 41 343-384 144-184 (391)
125 TIGR01324 cysta_beta_ly_B cyst 27.2 4.9E+02 0.011 27.9 10.6 43 343-386 135-177 (377)
126 PRK08134 O-acetylhomoserine am 26.6 2.8E+02 0.0061 30.5 8.7 59 343-412 149-208 (433)
127 PRK05973 replicative DNA helic 25.5 5.3E+02 0.011 26.0 9.7 104 254-382 81-191 (237)
128 PRK06444 prephenate dehydrogen 25.5 2.2E+02 0.0047 27.9 6.8 25 268-294 3-27 (197)
129 KOG1015 Transcription regulato 25.4 46 0.001 39.9 2.3 16 542-557 1151-1166(1567)
130 PRK07810 O-succinylhomoserine 25.1 5.5E+02 0.012 27.8 10.6 43 343-386 155-197 (403)
131 cd00614 CGS_like CGS_like: Cys 24.8 4E+02 0.0087 28.2 9.3 43 343-386 125-167 (369)
132 PRK08248 O-acetylhomoserine am 24.8 4.1E+02 0.0088 29.2 9.5 41 343-384 149-189 (431)
133 KOG1015 Transcription regulato 24.5 76 0.0016 38.2 3.8 29 127-155 457-488 (1567)
134 cd00562 NifX_NifB This CD repr 23.8 1.3E+02 0.0027 25.2 4.3 39 251-294 47-85 (102)
135 PHA00438 hypothetical protein 23.4 58 0.0013 26.9 1.9 17 492-508 47-63 (81)
136 PF10087 DUF2325: Uncharacteri 23.3 1.6E+02 0.0034 25.0 4.8 39 339-381 44-82 (97)
137 COG0826 Collagenase and relate 23.1 5.5E+02 0.012 27.5 9.8 78 342-420 25-108 (347)
138 COG0269 SgbH 3-hexulose-6-phos 23.1 7.1E+02 0.015 24.8 9.7 37 341-382 78-114 (217)
139 COG0373 HemA Glutamyl-tRNA red 23.0 2.2E+02 0.0048 31.2 6.9 130 263-420 172-302 (414)
140 PRK08249 cystathionine gamma-s 22.6 4.3E+02 0.0094 28.5 9.2 43 343-386 149-191 (398)
141 PF00070 Pyr_redox: Pyridine n 22.4 1.4E+02 0.003 24.0 4.1 42 254-295 11-58 (80)
142 PLN02383 aspartate semialdehyd 22.3 2.9E+02 0.0063 29.4 7.6 97 263-383 5-101 (344)
143 TIGR01329 cysta_beta_ly_E cyst 22.3 4.7E+02 0.01 27.9 9.3 41 343-384 131-171 (378)
144 PRK14874 aspartate-semialdehyd 22.2 4.5E+02 0.0099 27.7 9.0 92 266-384 2-96 (334)
145 KOG0053 Cystathionine beta-lya 22.1 3.8E+02 0.0082 29.4 8.3 41 344-387 163-205 (409)
146 PRK09330 cell division protein 21.9 7.1E+02 0.015 27.1 10.4 144 246-409 17-164 (384)
147 PRK11145 pflA pyruvate formate 21.8 4.4E+02 0.0095 26.1 8.4 58 346-412 73-131 (246)
148 PRK07582 cystathionine gamma-l 21.8 4E+02 0.0087 28.3 8.6 21 363-383 151-171 (366)
149 PF08070 DTHCT: DTHCT (NUC029) 21.7 1.2E+02 0.0027 26.2 3.7 8 145-152 58-65 (96)
150 KOG2422 Uncharacterized conser 21.6 63 0.0014 36.6 2.4 14 114-127 89-102 (665)
151 COG0626 MetC Cystathionine bet 21.6 3.6E+02 0.0079 29.4 8.2 109 244-388 79-193 (396)
152 KOG0943 Predicted ubiquitin-pr 21.6 1E+02 0.0022 37.9 4.1 12 489-500 2106-2117(3015)
153 KOG2393 Transcription initiati 21.2 86 0.0019 35.1 3.3 21 134-154 259-279 (555)
154 TIGR03576 pyridox_MJ0158 pyrid 20.8 7.1E+02 0.015 26.2 10.2 41 343-383 136-177 (346)
155 PRK05613 O-acetylhomoserine am 20.7 6E+02 0.013 28.0 9.8 41 363-412 174-214 (437)
156 PRK05671 aspartate-semialdehyd 20.5 5.1E+02 0.011 27.5 8.9 93 267-383 6-98 (336)
157 cd00757 ThiF_MoeB_HesA_family 20.3 7.5E+02 0.016 24.3 9.7 24 244-267 23-46 (228)
158 PRK06728 aspartate-semialdehyd 20.2 5.3E+02 0.012 27.6 9.0 95 265-383 5-100 (347)
159 KOG2897 DNA-binding protein YL 20.1 52 0.0011 35.2 1.3 8 156-163 46-53 (390)
160 PRK08574 cystathionine gamma-s 20.1 8.2E+02 0.018 26.2 10.6 43 343-386 137-179 (385)
No 1
>PLN02967 kinase
Probab=100.00 E-value=5.1e-97 Score=811.76 Aligned_cols=560 Identities=72% Similarity=1.140 Sum_probs=497.0
Q ss_pred CCccccccccccccccccCcc---ccccceeEeccccccccchhhHHhhhhhhhh-hccccccCCCcccccccCCCCccc
Q 008168 1 MASLSFAHFLSLPRCHSNWQY---CSSVNLMHAQNFRLHSAKWHLVATSRKKIVQ-ASAQDELSGSEAVVKKRTPLTTKR 76 (575)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 76 (575)
|++|+|+|||++||||.+||+ |..+|+++.+.+|+| +||.+.|.+|||++. ..++|++.+|+++++|+ ++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 75 (581)
T PLN02967 1 MASLSFTQFLSFPRCNADVPCLLQSLGFNKFRGERWRLQ-NKFLLAAGSRKKIESALAVDEEPDENGAVSKKK----PTR 75 (581)
T ss_pred CCcccchhhhcCCCCcCCCchhhhhhhhhhhhhhhhhhh-hHHHhhhhhhhhcccccccccCCcccCceeccC----Ccc
Confidence 899999999999999999996 677888899999999 999999999999999 88888899999999999 999
Q ss_pred ccccccccccc---CCCcccccccccccccCccccccccCCCCCCCcccccccccccCCccchhhhhhhhhhcccccccc
Q 008168 77 ATFKQTRKKSE---TDALDENSDLELSRDASDEESIVASSSKDTKKTPRMTRRKAASASTGMEEEKTEKKVRRRRKTTKK 153 (575)
Q Consensus 77 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (575)
+|+| +|||++ ++.++++++++|+.|+. ....+||++||||||||+||++++|+++|||+|+|||+|++
T Consensus 76 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (581)
T PLN02967 76 SVKR-ATKKTVVEISEPLEEGSELVVNEDAA--------LDKESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKM 146 (581)
T ss_pred cccc-ccCCcceeccCCccccceEEecCccc--------cccccccCcchhhhhhhhcccchhhhhcchhhhhcccccch
Confidence 9999 999885 67888999999999865 34467999999999999999999999999999999999999
Q ss_pred cCCcccccCCCCccCChhhhccccccccccccccccccCCCcccccccCCCCcEEEECcceeeeeccCCCCCCCcchhhh
Q 008168 154 IGDETEDQGNESEISDVEEYTFINIVDDESKGEIELEKDDGEDISFTYGWPPLVCCFGSAQHAFVPSGRPANRLIDHEIH 233 (575)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~~~~~~~~VlviG~~~vDii~~~~~~~~lp~~e~~ 233 (575)
+ +..||++.+++.++.++..+....++|++.|.++.++++|+|+++|++.+.|+|||++++|+++.+.+..++..++++
T Consensus 147 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~iGe~l~D~~p~g~~~~~l~~~~~~ 225 (581)
T PLN02967 147 D-EDVEDQGSESEVSDVEESEFVTSLENESEEELDLEKDDGEDISHTYGWPPLVCCFGAAQHAFVPSGRPANRLLDYEIH 225 (581)
T ss_pred h-hcccccccccccccchhccccccccccccccccccccccccccCcCCCCCeEEEECchhheecccCccchhhhhcccc
Confidence 8 567788889999999999999999999999999999999999999999999999999999999987777778888899
Q ss_pred hhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEc
Q 008168 234 ERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIG 313 (575)
Q Consensus 234 ~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd 313 (575)
..+.+..|++..+...+||+++|+|++|++||.++.|||.||+|.+|+++++.|+..||+++++.+.++.+|+++++.++
T Consensus 226 ~~~~~~~s~~~~~~~~~GGa~aNVAvaLARLG~~v~fIg~VGdD~~G~~ll~~L~~~GVDts~v~~~~~~~Tgla~V~vd 305 (581)
T PLN02967 226 ERMKDAFWAPEKFVRAPGGSAGGVAIALASLGGKVAFMGKLGDDDYGQAMLYYLNVNKVQTRSVCIDGKRATAVSTMKIA 305 (581)
T ss_pred ccccccccCccceeeecCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCcEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred CCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchh
Q 008168 314 KRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEE 393 (575)
Q Consensus 314 ~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~ 393 (575)
.+|++++.++.++++..++.++++...+..+++||++++.++++.....+..+++.++++|++|+||+|++.++|.+...
T Consensus 306 ~~Gerr~~~~~~gAd~~L~~~di~~~~l~~A~i~hfgg~~ll~e~~~~all~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~ 385 (581)
T PLN02967 306 KRGRLKTTCVKPCAEDSLSKSEINIDVLKEAKMFYFNTHSLLDPTMRSTTLRAIKISKKLGGVIFYDLNLPLPLWSSSEE 385 (581)
T ss_pred CCCceEEEEecCChhhhCChhhcCHhHhcCCCEEEEeCchhcccchHHHHHHHHHHHHHCCCEEEEECCCCcccccchHH
Confidence 99998876677888888888888877889999999999877666677889999999999999999999999999976666
Q ss_pred HHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCc
Q 008168 394 TKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDD 473 (575)
Q Consensus 394 ~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~ 473 (575)
+.+.+.++++++|||++|++|+..|+|.......+........+.++.++.+..++..|++.||||+|++|+++++.+..
T Consensus 386 ~~e~i~elL~~aDILk~NeeEl~~LtG~~~~~e~~~~~~~~~~~~~~~~e~a~~l~~~g~k~VVVTlG~~Ga~~~~~~~~ 465 (581)
T PLN02967 386 TKSFIQEAWNLADIIEVTKQELEFLCGIEPTEEFDTKDNDKSKFVHYSPEVVAPLWHENLKVLFVTNGTSKIHYYTKEHN 465 (581)
T ss_pred HHHHHHHHHHhCCEEEECHHHHHHHhCCCccccccccccchhccccchHHHHHHHHhCCCCEEEEEECccceEEEECCCc
Confidence 67788899999999999999999999864321111111223344444566777787889999999999999999998765
Q ss_pred eeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhh
Q 008168 474 GAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEV 553 (575)
Q Consensus 474 ~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l 553 (575)
..++.++.+++.+.+||||||||+|+||||++|+.+..+..+.+++.+|++||+++||++|+..|+..++|++++|+...
T Consensus 466 ~~v~~~~a~~V~V~vVDTTGAGDAF~AGfL~~Ll~g~~~~~g~~~LeeaLrfAnAaAAL~vt~~GA~~glPt~~eV~~~~ 545 (581)
T PLN02967 466 GAVHGMEDAPITPFTSDMSASGDGIVAGLMRMLTVQPHLITDKGYLEKTIKYAIDCGVIDQWLLARTRGFPPKEDMEDEV 545 (581)
T ss_pred eeEeeccCCCCCCCCCCCCchhHHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHhccCCCccCCCCHHHHhhhc
Confidence 56666555566544699999999999999999998533222236799999999999999999999999999999999999
Q ss_pred CCCCCCcccccccccccCCCCC
Q 008168 554 EPDPYGIRSMTEKEYRTLKPVS 575 (575)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~ 575 (575)
+.+++|||+|||+|||||++++
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~ 567 (581)
T PLN02967 546 EPDPNGIRSITEKEYRTLEPYS 567 (581)
T ss_pred cCCccccchhhhhhhccCCCcc
Confidence 9999999999999999999863
No 2
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.4e-59 Score=511.57 Aligned_cols=363 Identities=45% Similarity=0.815 Sum_probs=292.9
Q ss_pred CCCcccccccCCCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEE
Q 008168 192 DDGEDISFTYGWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFM 271 (575)
Q Consensus 192 ~~~~~i~~~~~~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~li 271 (575)
|..++|+|||.|.+.|||||++.+|+++.......-..++++..+....|.+..+...+||+++|+|++|+|||.++.|+
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ge~liDf~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~GGa~aNVAvaLARLG~~vafI 192 (496)
T PLN02543 113 DYDDGIDFPYDDPPLVCCFGAVQKEFVPTVRVHDNQMHPDMYSQWKMLQWDPPEFARAPGGPPSNVAISHVRLGGRAAFM 192 (496)
T ss_pred cccccccccCCCCCeEEEeChhhhhhcCCCcccccccccccccccccccccCCeeEeccCcHHHHHHHHHHHCCCCEEEE
Confidence 44457999999999999999999999987532222234567778888888889999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEc--CCCCeEEE-EecCCccccCCccccchhhhccCcEEE
Q 008168 272 GKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIG--KRGRLRMT-CVKPCAEDALTKSEINIDVLKEAKMFY 348 (575)
Q Consensus 272 g~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd--~~Ger~~~-~~~~ga~~~lt~~~i~~~~l~~ad~v~ 348 (575)
|.||+|.+|+++++.|++.||+++++.+.++.+|+++++.++ .+| +.+. ++.++++..+.+++++...+..+++||
T Consensus 193 G~VGdD~fG~~l~~~L~~~GVDts~v~~~~~~~Tgla~V~v~~~~~g-r~~~~~~~~gA~~~L~~~di~~~~l~~a~ilh 271 (496)
T PLN02543 193 GKVGDDDFGEELVLMMNKERVQTRAVKFDENAKTACSRMKIKFRDGG-KMVAETVKEAAEDSLLASELNLAVLKEARMFH 271 (496)
T ss_pred EEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCceEEEEEEeCCCC-CEEEEecCCCHHHhCChhhcCHhHhCCCceEE
Confidence 999999999999999999999999999988889999998884 445 4444 356677778888888878889999999
Q ss_pred EecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcc-
Q 008168 349 FSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEF- 427 (575)
Q Consensus 349 ~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~- 427 (575)
++++.+..+...+.+.++++.|++.|++|+||+|++.++|.+.+...+.+..+++++|||++|++|++.|+|.......
T Consensus 272 ~~~~~l~~~~~~~a~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~~aDIl~~SeeEa~~Ltg~~~~~~~~ 351 (496)
T PLN02543 272 FNSEVLTSPSMQSTLFRAIELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKAWNEADIIEVSRQELEFLLDEDYYERKR 351 (496)
T ss_pred ECChhhcCchHHHHHHHHHHHHHHCCCEEEEeCCCCccccCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCcccccc
Confidence 9998766666678899999999999999999999999999877777888899999999999999999999986421000
Q ss_pred --ccc---c-----cccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHH
Q 008168 428 --DTK---N-----NARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDG 497 (575)
Q Consensus 428 --d~~---~-----~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDa 497 (575)
+.. . ..........++.+..++..|++.||||+|++|+++++++..+.++.+....+++.+||||||||+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~VVVT~G~~Ga~~~t~~~~g~v~~~~~~~v~~~~VDTTGAGDA 431 (496)
T PLN02543 352 NYPPQYYAESFEQTKNWRDYYHYTPEEIAPLWHDGLKLLLVTDGTLRIHYYTPKFDGVVVGTEDVLITPFTCDRTGSGDA 431 (496)
T ss_pred cccchhhhhhhhhhhcccccccCCHHHHHHHHHCCCCEEEEEcCCCcEEEEECCCcccccccccccCCCCCcCCCchHHH
Confidence 000 0 000011122345667777889999999999999999987544444332211222226999999999
Q ss_pred HHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 498 IVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 498 F~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
|+|||+++|+.+..+..++.++++|++||++|||++|++.|+..++|++++|+.|+++
T Consensus 432 F~AGfL~~Ll~~~~~~~~g~~l~ealrfAnAaaAl~vt~~GA~~~lPt~~ev~~~~~~ 489 (496)
T PLN02543 432 VVAAIMRKLTTCPEMFEDQDVLERQLRFAVAAGIISQWTIGAVRGFPTESATQNLKEQ 489 (496)
T ss_pred HHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHh
Confidence 9999999999642222223789999999999999999999999999999999999865
No 3
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.7e-45 Score=368.85 Aligned_cols=322 Identities=38% Similarity=0.651 Sum_probs=278.3
Q ss_pred cccccCCCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCC
Q 008168 197 ISFTYGWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGD 276 (575)
Q Consensus 197 i~~~~~~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~ 276 (575)
++.++++++.|+|+|++++|+++.++ ++|.+ ...|.+..+...+||+++|+|++++|||.++.|||.||+
T Consensus 2 ~~~~~~~~~~vv~fGs~~~D~V~~~~---~~p~~-------ge~~~~~~f~~~~GG~~aN~AvaaarLG~~~afiGkvGd 71 (330)
T KOG2855|consen 2 ISAVYGEPPLVVVFGSMLIDFVPSTR---RLPNA-------GETWEPPGFKTAPGGKGANQAVAAARLGGRVAFIGKVGD 71 (330)
T ss_pred ccccccCCceEEEeccceeeeeeccc---cCCCc-------cccccCCcceecCCCcchhhhhHHHhcCcceeeeecccc
Confidence 56788999999999999999999874 55542 125677899999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCC--ccccchhhhccCcEEEEecccc
Q 008168 277 DEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALT--KSEINIDVLKEAKMFYFSTHSM 354 (575)
Q Consensus 277 D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt--~~~i~~~~l~~ad~v~~sg~~l 354 (575)
|.||..+++.|+..||+++++..+.+.+|+++.+.+..+|++.+.++. +++..+. ..++..+.++.+++||+.+..+
T Consensus 72 D~fG~~l~~~L~~~~V~~~~v~~~~~~~T~~a~i~v~~dG~~~~~~v~-gan~~~~~~~se~~~~~i~~ak~~~~q~ei~ 150 (330)
T KOG2855|consen 72 DEFGDDLLDILKQNGVDTSGVKFDENARTACATITVSKDGENRIIFVR-GANADMLPEDSELNLEVIKEAKVFHCQSEIL 150 (330)
T ss_pred hhhHHHHHHHHhhCCcccccceecCCCceEEEEEEEccCCceEEEEEe-cCchhcCcccccccHHHHhhccEEEEeeecC
Confidence 999999999999999999999999999999999999999999887543 4443333 3566688999999999998776
Q ss_pred cccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCccccccccc
Q 008168 355 LERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNAR 434 (575)
Q Consensus 355 ~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~ 434 (575)
++..........++.+++.|..+++||+.+.++|......+..+..++..+|++.++.+|+..++|...+
T Consensus 151 ~~~~~~s~~~~~~~~~~~~g~~i~~~pn~~l~l~~~~~~ne~e~~~i~~~adv~~~s~~e~~fl~~~~~~---------- 220 (330)
T KOG2855|consen 151 IEEPMRSLHIAAVKVAKNAGPAIFYDPNLRLPLWDSLEENESEIASIWNMADVIKVSSQELAFLTGIEDD---------- 220 (330)
T ss_pred CcchhHHHHHhhhhhhhcccccccCCCCccccccccccccHHHHHHHhhhhhcccccHHHHHHhccCccc----------
Confidence 6666666656667789999999999999999999987777777999999999999999999999987321
Q ss_pred ccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCce-eEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCC
Q 008168 435 SKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDG-AVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLI 513 (575)
Q Consensus 435 ~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~-~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~ 513 (575)
+.. +|++.+.++||||+|++||+||+++... +++. ..|+ +||||||||+|+|||+++|.+| .+.
T Consensus 221 --------~~~-~L~~~~~k~viVTlG~kG~~y~tk~~~~~~v~~---~~V~--~VDtTGAGDsFvgal~~~L~~~-~~~ 285 (330)
T KOG2855|consen 221 --------KIL-KLWHMKLKLVIVTLGEKGCRYYTKDFKGSHVPA---FKVK--AVDTTGAGDSFVGALAVQLVRG-SLL 285 (330)
T ss_pred --------hHH-HHhccCCCEEEEEeCCCceEEEecCCCCCCCCC---cccc--cccCCCchHHHHHHHHHHHhhc-ccc
Confidence 233 8999989999999999999999999877 4444 4565 8999999999999999999998 443
Q ss_pred CCchhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 514 TDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 514 ~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
. ...+++++++|++||++++++.|+.+++|+.++++..+..
T Consensus 286 ~-~~~L~~~l~~A~a~~ai~v~~~Ga~~s~p~~~~~~~~~~~ 326 (330)
T KOG2855|consen 286 P-ELSLEEALRFANACGAITVQRKGAIPSMPTEKEVQSLLKS 326 (330)
T ss_pred c-hHHHHHHHHHHHHhhhHHhhccCCCccCccHHHHHHHhhh
Confidence 3 5679999999999999999999999999999999988754
No 4
>PLN02323 probable fructokinase
Probab=100.00 E-value=3.4e-44 Score=375.95 Aligned_cols=320 Identities=33% Similarity=0.596 Sum_probs=261.4
Q ss_pred CCCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008168 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 202 ~~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~ 281 (575)
.+.++|++||++++|+++... .+|. .....+...+||+++|+|++|++||.++.++|.||+|.+|+
T Consensus 8 ~~~~~i~~iG~~~vD~~~~~~---~~~~-----------~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~ 73 (330)
T PLN02323 8 AESSLVVCFGEMLIDFVPTVS---GVSL-----------AEAPAFKKAPGGAPANVAVGISRLGGSSAFIGKVGDDEFGH 73 (330)
T ss_pred CCCCcEEEechhhhhhccCCC---CCCc-----------ccccceeecCCChHHHHHHHHHhcCCceeEEEEecCChhHH
Confidence 345679999999999997541 2221 01255678999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEec-CCccccCCccccchhhhccCcEEEEecccccccchH
Q 008168 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVK-PCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMK 360 (575)
Q Consensus 282 ~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~-~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~ 360 (575)
++++.|++.||+++++.+.++.+|+++++.++.+|++++.+.. .++...++.++++...+..++++|++++.++.+...
T Consensus 74 ~i~~~L~~~GI~~~~v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (330)
T PLN02323 74 MLADILKKNGVNNEGVRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDLDLIRKAKIFHYGSISLITEPCR 153 (330)
T ss_pred HHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCceeEEeecCCchhccCChHHCChHHHccCCEEEEechhccCchHH
Confidence 9999999999999999988888999999999888988876432 455556777888777788999999998765544455
Q ss_pred HHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCC
Q 008168 361 STTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHY 440 (575)
Q Consensus 361 e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~ 440 (575)
..+..+++.+++.|.+|+||++++..+|.+.....+.+.++++++|++++|.+|+..++|.....
T Consensus 154 ~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~g~~~~~--------------- 218 (330)
T PLN02323 154 SAHLAAMKIAKEAGALLSYDPNLRLPLWPSAEAAREGIMSIWDEADIIKVSDEEVEFLTGGDDPD--------------- 218 (330)
T ss_pred HHHHHHHHHHHHcCCEEEEcCCCChhhccCHHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCcc---------------
Confidence 66778899999999999999998888886655566778889999999999999999999864321
Q ss_pred cHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHH
Q 008168 441 EPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLV 520 (575)
Q Consensus 441 ~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~ 520 (575)
.+.+.+++..|++.||||+|++|+++++++...++++ ++++ ++|||||||+|+|||+++|++|.+...+..++.
T Consensus 219 -~~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvDttGAGDaf~Agfl~~l~~g~~~~~~~~~l~ 292 (330)
T PLN02323 219 -DDTVVKLWHPNLKLLLVTEGEEGCRYYTKDFKGRVEG---FKVK--AVDTTGAGDAFVGGLLSQLAKDLSLLEDEERLR 292 (330)
T ss_pred -HHHHHHHHhcCCCEEEEecCCCceEEEeCCCceEeCC---ccCC--CCCCCCcHHHHHHHHHHHHHcCCccccchHHHH
Confidence 1223345567899999999999999999875555554 3454 799999999999999999999821111123499
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCCC
Q 008168 521 RTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEPD 556 (575)
Q Consensus 521 eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~~ 556 (575)
+|+++|+++|+++|++.|+..++|++++|++++++.
T Consensus 293 ~al~~a~a~Aa~~v~~~g~~~~~~~~~~v~~~l~~~ 328 (330)
T PLN02323 293 EALRFANACGAITTTERGAIPALPTKEAVLKLLKKA 328 (330)
T ss_pred HHHHHHHHHHHHHHhccCCccCCCCHHHHHHHHHHh
Confidence 999999999999999999988899999999998654
No 5
>PRK11142 ribokinase; Provisional
Probab=100.00 E-value=2.7e-42 Score=357.02 Aligned_cols=301 Identities=21% Similarity=0.280 Sum_probs=247.3
Q ss_pred CCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008168 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l 283 (575)
|++|+|+|++++|++... +++|.+ +.......+...+||++.|+|++|++||.++.++|.||+|.+|+.+
T Consensus 2 m~~i~~iG~~~~D~~~~~---~~~p~~-------~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i 71 (306)
T PRK11142 2 MGKLVVLGSINADHVLNL---ESFPRP-------GETLTGRHYQVAFGGKGANQAVAAARLGADIAFIACVGDDSIGESM 71 (306)
T ss_pred CCcEEEECCceeeEEEEe---CCCCCC-------CCeeEeccceecCCCcHHHHHHHHHhcCCcEEEEEEECCChhHHHH
Confidence 668999999999999765 344421 1112345677889999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccc--hhhhccCcEEEEecccccccchHH
Q 008168 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN--IDVLKEAKMFYFSTHSMLERNMKS 361 (575)
Q Consensus 284 ~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~--~~~l~~ad~v~~sg~~l~~~~~~e 361 (575)
++.|++.||+++++...++.+|+++++.++.+|++++. .+.++...+++++++ ...+..++++|+++. .+.+
T Consensus 72 ~~~L~~~gV~~~~i~~~~~~~t~~~~~~~~~~g~r~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~-----~~~~ 145 (306)
T PRK11142 72 RQQLAKDGIDTAPVSVIKGESTGVALIFVNDEGENSIG-IHAGANAALTPALVEAHRELIANADALLMQLE-----TPLE 145 (306)
T ss_pred HHHHHHcCCChhhEEEcCCCCCCEEEEEECCCCCEEEE-EeCCccccCCHHHHHHHHhhhccCCEEEEeCC-----CCHH
Confidence 99999999999999888888999999999888988765 456776777777665 255889999999842 2456
Q ss_pred HHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCc
Q 008168 362 TTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYE 441 (575)
Q Consensus 362 ~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~ 441 (575)
.+..+++.++++|++|+||++....+ ...+++++|++++|++|+..++|....+..+ .
T Consensus 146 ~~~~~~~~a~~~g~~v~~d~~~~~~~----------~~~~~~~~dil~~n~~Ea~~l~g~~~~~~~~------------~ 203 (306)
T PRK11142 146 TVLAAAKIAKQHGTKVILNPAPAREL----------PDELLALVDIITPNETEAEKLTGIRVEDDDD------------A 203 (306)
T ss_pred HHHHHHHHHHHcCCEEEEECCCCccc----------CHHHHhhCCEEcCCHHHHHHHhCCCCCChHH------------H
Confidence 77889999999999999998743322 2457889999999999999999864322111 1
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHH
Q 008168 442 PEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVR 521 (575)
Q Consensus 442 ~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~e 521 (575)
.+.++.+...|++.||||+|++|+++++++...++++ ++++ ++|||||||+|+|||+++|++| +++++
T Consensus 204 ~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvDt~GAGDaF~Agfi~~l~~g-------~~~~~ 271 (306)
T PRK11142 204 AKAAQVLHQKGIETVLITLGSRGVWLSENGEGQRVPG---FRVQ--AVDTIAAGDTFNGALVTALLEG-------KPLPE 271 (306)
T ss_pred HHHHHHHHHhCCCeEEEEECCCcEEEEeCCcceeccC---CCcc--cccCCCchhHHHHHHHHHHHCC-------CCHHH
Confidence 2455666677999999999999999988765444443 3454 8999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCHHHHHHhhC
Q 008168 522 TIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVE 554 (575)
Q Consensus 522 Al~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~ 554 (575)
|+++|+++|+++|++.|+..++|+.+++++++.
T Consensus 272 al~~a~~~Aa~~~~~~G~~~~~~~~~~~~~~~~ 304 (306)
T PRK11142 272 AIRFAHAAAAIAVTRKGAQPSIPWREEIDAFLQ 304 (306)
T ss_pred HHHHHHHHHHHHcCCCcccccCCCHHHHHHHHh
Confidence 999999999999999999888999999998875
No 6
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=4.8e-42 Score=371.08 Aligned_cols=323 Identities=19% Similarity=0.146 Sum_probs=257.3
Q ss_pred CCCCcEEEECcceeeeeccCCCCCC-------Ccch-------hhhhhhcccccCCCceEEecCChHHHHHHHHHHcC--
Q 008168 202 GWPPLVCCFGSAQHAFVPSGRPANR-------LIDH-------EIHERMKDALWAPEKFIRSPGGCTGSAAIALARLG-- 265 (575)
Q Consensus 202 ~~~~~VlviG~~~vDii~~~~~~~~-------lp~~-------e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG-- 265 (575)
...++|++||++++|++..+ ++ +|.. +.+..+.+.+ ....+...+||+++|+|++|++||
T Consensus 67 ~~~~~vl~iG~~~vDi~~~v---~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~-~~~~~~~~~GG~~~N~AvalarLG~~ 142 (426)
T PLN02813 67 PERWDVLGLGQAMVDFSGMV---DDEFLERLGLEKGTRKVINHEERGKVLRAL-DGCSYKASAGGSLSNTLVALARLGSQ 142 (426)
T ss_pred CCcceEEEeCCceeEEEEec---CHHHHHHcCCCcCcccccCHHHHHHHHHHh-hccCceEecCcHHHHHHHHHHHhccc
Confidence 56678999999999999876 23 4432 2222333333 245678999999999999999999
Q ss_pred ------CCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchh
Q 008168 266 ------GKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINID 339 (575)
Q Consensus 266 ------~~v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~ 339 (575)
.+|.|+|.||+|.+|+++++.|++.||++.++.+ .+.+|++++++++++|+++++ .+.++...++.+++...
T Consensus 143 ~~~~~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~-~~~~Tg~~~ilv~~~gertii-~~~Ga~~~l~~~~~~~~ 220 (426)
T PLN02813 143 SAAGPALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPV-KDGTTGTVIVLTTPDAQRTML-SYQGTSSTVNYDSCLAS 220 (426)
T ss_pred cccCCCCcEEEEEEeCCChHHHHHHHHHHHcCCcccceec-CCCCceEEEEEEcCCCCceee-eccCchhhCCccccCHH
Confidence 7999999999999999999999999999988764 456899999999999998875 55677767777666667
Q ss_pred hhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHH-HHHHHhhccCeEeecCHHHHHHh
Q 008168 340 VLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETK-MFIQQAWTLADVIEVTKQELEFL 418 (575)
Q Consensus 340 ~l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~-~~l~~ll~~aDIl~~N~~Ea~~L 418 (575)
.++.+++||++|+.+..+...+.+.++++.++++|++|+||++..... ...+ ..+..+++++|+|++|++|+..|
T Consensus 221 ~i~~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~~----~~~~~~l~~~ll~~vDil~~Ne~Ea~~l 296 (426)
T PLN02813 221 AISKSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSCI----ERHRDDFWDVMGNYADILFANSDEARAL 296 (426)
T ss_pred HHhcCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcchh----hhhHHHHHHHHHhcCCEEEeCHHHHHHH
Confidence 789999999998643223345788899999999999999997632111 0112 23445568999999999999999
Q ss_pred hCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHH
Q 008168 419 CGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGI 498 (575)
Q Consensus 419 ~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF 498 (575)
+|....+ ..+.+.+.+..+++.||||+|.+|++++.+++..++++ .+++ +||||||||+|
T Consensus 297 ~g~~~~~---------------~~~~a~~~L~~~~~~VVVT~G~~Ga~~~~~~~~~~~pa---~~v~--vVDTtGAGDAF 356 (426)
T PLN02813 297 CGLGSEE---------------SPESATRYLSHFCPLVSVTDGARGSYIGVKGEAVYIPP---SPCV--PVDTCGAGDAY 356 (426)
T ss_pred hCCCCCC---------------CHHHHHHHHHcCCCEEEEEeCCCCeEEEECCEEEEeCC---CCCC--cccCCChHHHH
Confidence 9864211 12334444456899999999999999988776555554 3454 89999999999
Q ss_pred HHHHHHHHHcCCCCCCCch-hHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCCCCCCcc
Q 008168 499 VAGIMRMLTVQPHLITDKG-YLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEPDPYGIR 561 (575)
Q Consensus 499 ~AGfl~~L~~g~~~~~d~~-sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~~~~~~~ 561 (575)
+|||+++|++| + ++++|+++|+++|+++|++.|+..++|+.+++.+.+..++.+.-
T Consensus 357 ~Agfl~~l~~G-------~~~l~~al~~A~a~Aa~~v~~~Ga~~~~~~~~e~~~~~~~~~~~~~ 413 (426)
T PLN02813 357 AAGILYGLLRG-------VSDLRGMGELAARVAATVVGQQGTRLRVEDAVELAESFALHLDGSD 413 (426)
T ss_pred HHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHcccCCCcCHHHHHHHHHHHHHHhccCc
Confidence 99999999999 8 99999999999999999999999999999999999988877654
No 7
>PTZ00292 ribokinase; Provisional
Probab=100.00 E-value=8e-42 Score=357.30 Aligned_cols=308 Identities=20% Similarity=0.269 Sum_probs=249.9
Q ss_pred CCCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008168 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 202 ~~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~ 281 (575)
..+++|+|+|.+++|++... +++|.+ .+ ......+...+||++.|+|++|++||.++.++|.||+|.+|+
T Consensus 13 ~~~~~vlviG~~~vD~~~~~---~~~~~~------~~-~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~is~vG~D~~g~ 82 (326)
T PTZ00292 13 EAEPDVVVVGSSNTDLIGYV---DRMPQV------GE-TLHGTSFHKGFGGKGANQAVMASKLGAKVAMVGMVGTDGFGS 82 (326)
T ss_pred CCCCCEEEEccceeeEEEec---CCCCCC------CC-ceeecCceeCCCCcHHHHHHHHHHcCCCeEEEEEECCChhHH
Confidence 34678999999999999875 344421 11 123456678999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCceEEEEEEc-CCCCeEEEEecCCccccCCccccch--hhhcc-CcEEEEeccccccc
Q 008168 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIG-KRGRLRMTCVKPCAEDALTKSEINI--DVLKE-AKMFYFSTHSMLER 357 (575)
Q Consensus 282 ~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd-~~Ger~~~~~~~ga~~~lt~~~i~~--~~l~~-ad~v~~sg~~l~~~ 357 (575)
++++.|++.||+++++.+.++.+|++++++++ .+|++.++ ..+++...+++++++. ..+.. ++++++++ .
T Consensus 83 ~i~~~l~~~GI~~~~~~~~~~~~t~~~~~~~~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~ 156 (326)
T PTZ00292 83 DTIKNFKRNGVNTSFVSRTENSSTGLAMIFVDTKTGNNEIV-IIPGANNALTPQMVDAQTDNIQNICKYLICQN-----E 156 (326)
T ss_pred HHHHHHHHcCCChhhEEEcCCCCCcEEEEEEeCCCCceEEE-EeCCccccCCHHHHHHHHHHhhhhCCEEEECC-----C
Confidence 99999999999999998878889999999998 77888765 4567777777776652 34667 89998864 2
Q ss_pred chHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccc
Q 008168 358 NMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKF 437 (575)
Q Consensus 358 ~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~ 437 (575)
.+.+.+.++++.+++.|++++||++.+...|. .+.+..+++++|++++|++|+..++|.......+
T Consensus 157 ~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~-----~~~~~~~l~~~dii~~n~~E~~~l~g~~~~~~~~--------- 222 (326)
T PTZ00292 157 IPLETTLDALKEAKERGCYTVFNPAPAPKLAE-----VEIIKPFLKYVSLFCVNEVEAALITGMEVTDTES--------- 222 (326)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEECCCCccccc-----cccHHHHHhcCCEEcCCHHHHHHHhCCCCCChhH---------
Confidence 24567788899999999999999986554442 2457788899999999999999998865322111
Q ss_pred cCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCc-eeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCc
Q 008168 438 VHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDD-GAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDK 516 (575)
Q Consensus 438 ~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~-~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~ 516 (575)
..+.++.+.+.+++.||||+|++|+++++++.. .++++ ++++ +||||||||+|+|||+++|++|
T Consensus 223 ---~~~~~~~l~~~g~~~vvvT~G~~Ga~~~~~~~~~~~~~~---~~~~--vvDttGAGDaF~ag~l~~l~~g------- 287 (326)
T PTZ00292 223 ---AFKASKELQQLGVENVIITLGANGCLIVEKENEPVHVPG---KRVK--AVDTTGAGDCFVGSMAYFMSRG------- 287 (326)
T ss_pred ---HHHHHHHHHHcCCCeEEEEeCCCcEEEEeCCCceEEccC---Cccc--cCCCcchHHHHHHHHHHHHHCC-------
Confidence 124456677779999999999999999987653 44443 3444 8999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhC
Q 008168 517 GYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVE 554 (575)
Q Consensus 517 ~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~ 554 (575)
+++++|+++|+++|+++|++.|+..++|+.+++++.++
T Consensus 288 ~~~~~al~~a~a~Aa~~v~~~G~~~~~~~~~~~~~~~~ 325 (326)
T PTZ00292 288 KDLKESCKRANRIAAISVTRHGTQSSYPHPSELPADVK 325 (326)
T ss_pred CCHHHHHHHHHHHHHHHcCCCCccccCCCHHHHHHHhc
Confidence 99999999999999999999999988999999988775
No 8
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=100.00 E-value=1e-41 Score=352.79 Aligned_cols=301 Identities=27% Similarity=0.466 Sum_probs=245.6
Q ss_pred CCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008168 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l 283 (575)
|++|++||++++|+++... ......+||+++|+|++|++||.++.++|.||+|.+|+++
T Consensus 2 ~~~il~iG~~~iD~~~~~~---------------------~~~~~~~GG~~~N~a~~l~~LG~~~~~v~~vG~D~~g~~i 60 (304)
T PRK09434 2 MNKVWVLGDAVVDLIPEGE---------------------NRYLKCPGGAPANVAVGIARLGGESGFIGRVGDDPFGRFM 60 (304)
T ss_pred CCcEEEecchheeeecCCC---------------------CceeeCCCChHHHHHHHHHHcCCCceEEEEecCchHHHHH
Confidence 4589999999999995320 2345679999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEE-ecCCccccCCccccchhhhccCcEEEEecccccccchHHH
Q 008168 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTC-VKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKST 362 (575)
Q Consensus 284 ~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~-~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e~ 362 (575)
++.|++.||++.++.+.++.+|+.+++.++++|++++.+ ..+++...++..+++ .+.+++++|++++.+..+.....
T Consensus 61 ~~~l~~~gI~~~~~~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 138 (304)
T PRK09434 61 QQTLQDEGVDTTYLRLDPAHRTSTVVVDLDDQGERSFTFMVRPSADLFLQPQDLP--PFRQGEWLHLCSIALSAEPSRST 138 (304)
T ss_pred HHHHHHcCCCCcceEEcCCCCceEEEEEECCCCCEeEEEecCCchhhhCCHHHhh--hhcCCCEEEEccccccCchHHHH
Confidence 999999999999998888889999999998888887643 334444445555543 36789999999876554445567
Q ss_pred HHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcH
Q 008168 363 TLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEP 442 (575)
Q Consensus 363 ~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~ 442 (575)
..++++.++++|.+++||++.+..+|......++.+.++++++|++++|++|+..|+|... ..
T Consensus 139 ~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~e~~~l~g~~~-----------------~~ 201 (304)
T PRK09434 139 TFEAMRRIKAAGGFVSFDPNLREDLWQDEAELRECLRQALALADVVKLSEEELCFLSGTSQ-----------------LE 201 (304)
T ss_pred HHHHHHHHHHcCCEEEECCCCChhhccCHHHHHHHHHHHHHhcceeeCCHHHHHHHhCCCC-----------------HH
Confidence 7889999999999999999988778865556677788899999999999999999988532 12
Q ss_pred HHHHHHhh-cCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHH
Q 008168 443 EVIAPLWH-ENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVR 521 (575)
Q Consensus 443 e~~~~l~~-~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~e 521 (575)
++++.+.+ .|++.||||+|++|+++++++...++++ ++++ ++|||||||+|+|||+++|++|... .+..++++
T Consensus 202 ~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~~~--~vDttGAGD~f~ag~~~~l~~g~~~-~~~~~~~~ 275 (304)
T PRK09434 202 DAIYALADRYPIALLLVTLGAEGVLVHTRGQVQHFPA---PSVD--PVDTTGAGDAFVAGLLAGLSQAGLW-TDEAELAE 275 (304)
T ss_pred HHHHHHHhhcCCcEEEEEecCCceEEEeCCceeEeCC---CCCC--CCcCCCchHHHHHHHHHHHHcCCCc-cchHHHHH
Confidence 55666665 5889999999999999998775555543 4454 7999999999999999999998111 01128999
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCHHHHH
Q 008168 522 TIKYAIDCGVRDQWSQARTLGYPPKEGME 550 (575)
Q Consensus 522 Al~~A~aaAA~~v~~~G~~~g~pt~eeve 550 (575)
|+++|+++|+++|++.|+..++|++++++
T Consensus 276 a~~~a~~~Aa~~v~~~g~~~~~~~~~~~~ 304 (304)
T PRK09434 276 IIAQAQACGALATTAKGAMTALPNRQELE 304 (304)
T ss_pred HHHHHHHHHHHHHcccCCcCCCCChHHcC
Confidence 99999999999999999998999987753
No 9
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=4.4e-41 Score=368.17 Aligned_cols=321 Identities=18% Similarity=0.171 Sum_probs=249.1
Q ss_pred CCCCcEEEECcceeeeeccCCCCCCCcchhhh--hhhcccc--cCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCC
Q 008168 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIH--ERMKDAL--WAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDD 277 (575)
Q Consensus 202 ~~~~~VlviG~~~vDii~~~~~~~~lp~~e~~--~~~~d~~--~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D 277 (575)
..|++|+|+|++++|++..+ +++|.+... ......+ ..+......+|| ++|+|++|++||.+|.++|.||+|
T Consensus 70 ~~~~~vl~lG~~~vD~i~~V---~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvAvaLarLG~~v~lig~VG~D 145 (470)
T PLN02341 70 GKEIDVATLGNLCVDIVLPV---PELPPPSREERKAYMEELAASPPDKKSWEAGG-NCNFAIAAARLGLRCSTIGHVGDE 145 (470)
T ss_pred cccccEEEECCcceeEEEec---CCCCCCCHHHHHHHHHhhcccccccceecCCh-HHHHHHHHHHcCCCeEEEEEecCc
Confidence 56778999999999999876 466653211 0111100 012344556788 689999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCccceEEEcC--------CCCceEEEEEEcCCCCeEEEEecCCccccCCcc---cc---chhhhcc
Q 008168 278 EYGQAMLYYMNVNNVQTRSVRIDA--------KRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKS---EI---NIDVLKE 343 (575)
Q Consensus 278 ~~G~~l~~~L~~~GIdt~~v~~~~--------~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~---~i---~~~~l~~ 343 (575)
.+|+++++.|++.||++.++...+ ...|++++++++++|++.+... .......... .+ ....++.
T Consensus 146 ~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~-~~~~~~~~~~~~~~l~~~~~~~l~~ 224 (470)
T PLN02341 146 IYGKFLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSR-ADFGPEPAFSWISKLSAEAKMAIRQ 224 (470)
T ss_pred HHHHHHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeec-cccccccchhhhhcccHHHHhhhhc
Confidence 999999999999999999987654 3579999999998888654321 1111111111 11 1356789
Q ss_pred CcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCC-ccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCC
Q 008168 344 AKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPL-PLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIK 422 (575)
Q Consensus 344 ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~-~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~ 422 (575)
+++||++++... ..+.+.+..+++.+++.|++|+||++.+. .+|...+...+.+..+++++|++++|++|+..|+|..
T Consensus 225 adiv~lsg~~~~-~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~~~Dil~~Ne~Ea~~l~g~~ 303 (470)
T PLN02341 225 SKALFCNGYVFD-ELSPSAIASAVDYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLRMSDVLLLTSEEAEALTGIR 303 (470)
T ss_pred CCEEEEeceeCC-cCCHHHHHHHHHHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHhhCCEEEecHHHHHHHhCCC
Confidence 999999987532 34567888999999999999999998653 3454433445567889999999999999999999863
Q ss_pred CCCcccccccccccccCCcHHHHHHHhhcC--CCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHH
Q 008168 423 PTEEFDTKNNARSKFVHYEPEVIAPLWHEN--LKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVA 500 (575)
Q Consensus 423 ~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g--~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~A 500 (575)
. ..+.++.++..+ .+.||||+|++|+++++++...++++ ++++ +||||||||+|+|
T Consensus 304 ~-----------------~~~a~~~l~~~g~~~k~VVVTlG~~Ga~~~~~~~~~~vpa---~~v~--vVDTtGAGDaF~A 361 (470)
T PLN02341 304 N-----------------PILAGQELLRPGIRTKWVVVKMGSKGSILVTRSSVSCAPA---FKVN--VVDTVGCGDSFAA 361 (470)
T ss_pred C-----------------HHHHHHHHHhcCCCCCEEEEeeCCCCeEEEECCeeEEeCC---CCcC--CCCCcCccHHHHH
Confidence 2 125566676666 58999999999999999876555554 4555 8999999999999
Q ss_pred HHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCCCC
Q 008168 501 GIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEPDP 557 (575)
Q Consensus 501 Gfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~~~ 557 (575)
||+++|++| +++++|+++|+++||++|+..|+..++|++++|+.+|....
T Consensus 362 gfl~gll~G-------~~l~eal~~A~a~aA~~v~~~Ga~~~~p~~~ev~~~l~~~~ 411 (470)
T PLN02341 362 AIALGYIHN-------LPLVNTLTLANAVGAATAMGCGAGRNVATLEKVLELLRASN 411 (470)
T ss_pred HHHHHHHcC-------CCHHHHHHHHHHHHHHHHcCcCCCCCCCCHHHHHHHHHhcC
Confidence 999999999 99999999999999999999999999999999999997644
No 10
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.6e-41 Score=347.35 Aligned_cols=309 Identities=23% Similarity=0.345 Sum_probs=257.6
Q ss_pred cEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008168 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~ 285 (575)
+|++||++++|++... .+++|.. .+.. ........+||++.|+|+++++||.++.|+|.||+|.+|+++++
T Consensus 1 ~v~~iG~~~vD~~~~~--~~~~~~~------~~~~-~~~~~~~~~GG~~~N~A~~~a~lG~~~~~~~~vG~D~~g~~~~~ 71 (311)
T COG0524 1 DVVVIGEANVDLIAQV--VDRLPEP------GETV-LGDFFKVAGGGKGANVAVALARLGAKVALIGAVGDDDFGEFLLE 71 (311)
T ss_pred CEEEECchhhheehhh--ccCCCCC------cccc-cccceeecCCchHHHHHHHHHHcCCceEEEEEecCcHHHHHHHH
Confidence 4899999999999853 1344431 1111 12346788999999999999999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHHH
Q 008168 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQ 365 (575)
Q Consensus 286 ~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~ 365 (575)
.|++.||+++++....+.+|+.+++.++.+|++.+.+....+...++++.+++..+..++++|++++.+..+ .+.+..
T Consensus 72 ~l~~~GVd~~~~~~~~~~~tg~~~i~~~~~g~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~ 149 (311)
T COG0524 72 ELRKEGVDTSHVVTDEGATTGLALILVDEDGERTFVFYRGAAALLLTPEDLDEDELAGADVLHISGIQLEIP--PEALLA 149 (311)
T ss_pred HHHHcCCccceEEEcCCCcceEEEEEEcCCCceeEEEECCcccccCChHHcChHHHhhcCeeeEEEeecCCC--hHHHHH
Confidence 999999999999988888999999999988999887544435666888888767788999999999765332 288899
Q ss_pred HHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcHHHH
Q 008168 366 AIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVI 445 (575)
Q Consensus 366 ~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~ 445 (575)
+++.+++.|.+|++|++.++.+|. .+.+..+++++|++++|+.|++.|+|.. .+ .....
T Consensus 150 ~~~~a~~~g~~v~~d~~~~~~~~~-----~~~~~~~l~~~d~~~~n~~E~~~l~g~~-~~---------------~~~~~ 208 (311)
T COG0524 150 ALELAKAAGVTVSFDLNPRPALWD-----RELLEELLALADILFPNEEEAELLTGLE-ED---------------AEAAA 208 (311)
T ss_pred HHHHHHHcCCeEEEecCCCccccc-----hhhHHHHHhhCCEEeCCHHHHHHHhCCC-cc---------------HHHHH
Confidence 999999999999999999988874 5678889999999999999999999851 11 11223
Q ss_pred HHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHH
Q 008168 446 APLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKY 525 (575)
Q Consensus 446 ~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~ 525 (575)
..++..+++.+|||+|++|+++++.+....++..+.++++ +||||||||+|+|||+++|++| +++.+|+++
T Consensus 209 ~~~~~~~~~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~~~~--vvDttGAGDaF~agfl~~~~~g-------~~~~~a~~~ 279 (311)
T COG0524 209 ALLLAKGVKTVVVTLGAEGAVVFTGGGEVTVPVPAAFKVK--VVDTTGAGDAFAAGFLAGLLEG-------KSLEEALRF 279 (311)
T ss_pred HHHhhcCCCEEEEEeCCCcEEEEeCCCceeeccCCCCccc--cccCCCchHHHHHHHHHHHHcC-------CCHHHHHHH
Confidence 4566779999999999999999998654445544344554 8999999999999999999999 899999999
Q ss_pred HHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 526 AIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 526 A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
|+++|+++++..|+...+|+.++++.++..
T Consensus 280 a~a~aa~~~~~~g~~~~~p~~~~~~~~~~~ 309 (311)
T COG0524 280 ANAAAALAVTRPGARPSLPTREEVEAFLEE 309 (311)
T ss_pred HHHHhhhhhccCCCCCCCCCHHHHHHHHhc
Confidence 999999999999999999999999998864
No 11
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=100.00 E-value=4.3e-41 Score=349.50 Aligned_cols=300 Identities=19% Similarity=0.219 Sum_probs=240.7
Q ss_pred CCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccC----------CCceEEecCChHHHHHHHHHHcCCCeEEEEE
Q 008168 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWA----------PEKFIRSPGGCTGSAAIALARLGGKVAFMGK 273 (575)
Q Consensus 204 ~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~----------~~~~~~~~GG~a~NvA~aLarLG~~v~lig~ 273 (575)
+.+|+|+|++++|++..+ +++|.+.......+.+.. .......+||+++|+|++|++||.++.++|.
T Consensus 1 ~~~v~~vG~~~~D~~~~v---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~i~~ 77 (312)
T cd01168 1 RYDVLGLGNALVDILAQV---DDAFLEKLGLKKGDMILADMEEQEELLAKLPVKYIAGGSAANTIRGAAALGGSAAFIGR 77 (312)
T ss_pred CceEEEECCCeEEEEEec---CHHHHHHcCCCCCceeecCHHHHHHHHHhcCccccCCCHHHHHHHHHHHhcCCeEEEEE
Confidence 356999999999999876 355532111111111111 0136788999999999999999999999999
Q ss_pred eCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEeccc
Q 008168 274 LGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHS 353 (575)
Q Consensus 274 VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~ 353 (575)
||+|.+|+++++.|++.||++.++... +.+|+.++++++++|+++++ ..+++...++++++....+..+++||++++.
T Consensus 78 vG~D~~g~~i~~~l~~~GV~~~~~~~~-~~~t~~~~~~~~~~g~r~~~-~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~ 155 (312)
T cd01168 78 VGDDKLGDFLLKDLRAAGVDTRYQVQP-DGPTGTCAVLVTPDAERTMC-TYLGAANELSPDDLDWSLLAKAKYLYLEGYL 155 (312)
T ss_pred eccChhHHHHHHHHHHCCCccccccCC-CCCceEEEEEEcCCCceeee-cccchhhcCChhHCCHHHHccCCEEEEEEEe
Confidence 999999999999999999999988754 57899999999888998764 5677777888888877788999999999864
Q ss_pred ccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccc
Q 008168 354 MLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNA 433 (575)
Q Consensus 354 l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~ 433 (575)
+.. +.+.+..+++.+++.|++|+||++.+. + .....+.+..+++++|++++|++|++.|+|.+...
T Consensus 156 ~~~--~~~~~~~~~~~a~~~g~~v~~d~~~~~--~--~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~~~~-------- 221 (312)
T cd01168 156 LTV--PPEAILLAAEHAKENGVKIALNLSAPF--I--VQRFKEALLELLPYVDILFGNEEEAEALAEAETTD-------- 221 (312)
T ss_pred cCC--CHHHHHHHHHHHHHcCCEEEEeCCcHH--H--HHHHHHHHHHHHhhCCEEEeCHHHHHHHhCCCCCC--------
Confidence 322 237888899999999999999986321 1 12234557788999999999999999999852111
Q ss_pred cccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCC-CCCcccCccChhHHHHHHHHHHHHcCCCC
Q 008168 434 RSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAP-LTPFTSDMSASGDGIVAGIMRMLTVQPHL 512 (575)
Q Consensus 434 ~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~-v~~~vVDttGAGDaF~AGfl~~L~~g~~~ 512 (575)
..+.+..++..+++.||||+|++|+++++++...++++ ++ ++ +||||||||+|+|||+++|++|
T Consensus 222 -------~~~~a~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~~~~--vvDttGAGDaf~ag~l~~l~~g--- 286 (312)
T cd01168 222 -------DLEAALKLLALRCRIVVITQGAKGAVVVEGGEVYPVPA---IPVEK--IVDTNGAGDAFAGGFLYGLVQG--- 286 (312)
T ss_pred -------hHHHHHHHHhcCCCEEEEecCCCCeEEEECCEEEeCCC---CCCCC--cccCCchHHHHHHHHHHHHHcC---
Confidence 24677888888999999999999999998764444443 33 44 8999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcccccCC
Q 008168 513 ITDKGYLVRTIKYAIDCGVRDQWSQARTL 541 (575)
Q Consensus 513 ~~d~~sl~eAl~~A~aaAA~~v~~~G~~~ 541 (575)
+++++|+++|+++|+++|++.|+..
T Consensus 287 ----~~~~~a~~~a~~~Aa~~v~~~G~~~ 311 (312)
T cd01168 287 ----EPLEECIRLGSYAAAEVIQQLGPRL 311 (312)
T ss_pred ----CCHHHHHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999853
No 12
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=100.00 E-value=2e-40 Score=340.83 Aligned_cols=286 Identities=34% Similarity=0.577 Sum_probs=236.8
Q ss_pred cEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008168 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~ 285 (575)
+|+|||++++|++.... .. +..+...+||+++|+|++|++||.+|.++|.+|+|.+|+.+++
T Consensus 1 ~ilviG~~~~D~~~~~~---~~---------------~~~~~~~~GG~~~n~a~~l~~lg~~v~~i~~vG~D~~g~~i~~ 62 (295)
T cd01167 1 KVVCFGEALIDFIPEGS---GA---------------PETFTKAPGGAPANVAVALARLGGKAAFIGKVGDDEFGDFLLE 62 (295)
T ss_pred CEEEEcceeEEEecCCC---CC---------------CccccccCCCcHHHHHHHHHhcCCCeEEEEeecCcHHHHHHHH
Confidence 58999999999997542 10 2566788999999999999999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCc-cccchhhhccCcEEEEecccccccchHHHHH
Q 008168 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTK-SEINIDVLKEAKMFYFSTHSMLERNMKSTTL 364 (575)
Q Consensus 286 ~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~-~~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~ 364 (575)
.|++.||++.++.+..+.+|+++++.++++|++++.+. .++...... .++....++++++||++++.++++...+.+.
T Consensus 63 ~l~~~gi~~~~~~~~~~~~T~~~~~~~~~~g~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 141 (295)
T cd01167 63 TLKEAGVDTRGIQFDPAAPTTLAFVTLDADGERSFEFY-RGPAADLLLDTELNPDLLSEADILHFGSIALASEPSRSALL 141 (295)
T ss_pred HHHHcCCCchheeecCCCCceEEEEEECCCCCEeEEee-cCCcHhhhcCccCChhHhccCCEEEEechhhccchHHHHHH
Confidence 99999999999987778899999999988888887643 333222222 2144567889999999887555555567788
Q ss_pred HHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcHHH
Q 008168 365 QAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEV 444 (575)
Q Consensus 365 ~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~ 444 (575)
++++.+++.|+++++|++.+..+|.......+.+..+++++|++++|+.|+..|++.... .+.
T Consensus 142 ~~~~~~~~~g~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~~~-----------------~~~ 204 (295)
T cd01167 142 ELLEAAKKAGVLISFDPNLRPPLWRDEEEARERIAELLELADIVKLSDEELELLFGEEDP-----------------EEI 204 (295)
T ss_pred HHHHHHHHcCCEEEEcCCCChhhcCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCCH-----------------HHH
Confidence 999999999999999998776677544445667888999999999999999999886421 144
Q ss_pred HHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCch-------
Q 008168 445 IAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKG------- 517 (575)
Q Consensus 445 ~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~------- 517 (575)
++.+...|++.+|||+|++|+++++++...++++ ++++ ++|||||||+|+|||+++|++| +
T Consensus 205 ~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~a---~~~~--vvDttGAGD~f~a~~~~~l~~g-------~~~~~~~~ 272 (295)
T cd01167 205 AALLLLFGLKLVLVTRGADGALLYTKGGVGEVPG---IPVE--VVDTTGAGDAFVAGLLAQLLSR-------GLLALDED 272 (295)
T ss_pred HHHHhhcCCCEEEEecCCcceEEEECCcceeeCC---CCcc--eeeCCCccHHHHHHHHHHHHhC-------CcccccHH
Confidence 5567778999999999999999998876656655 3444 8999999999999999999999 7
Q ss_pred hHHHHHHHHHHHHHHHhccccc
Q 008168 518 YLVRTIKYAIDCGVRDQWSQAR 539 (575)
Q Consensus 518 sl~eAl~~A~aaAA~~v~~~G~ 539 (575)
++++|+++|+++|+++|++.|+
T Consensus 273 ~~~~a~~~a~~~aa~~~~~~G~ 294 (295)
T cd01167 273 ELAEALRFANAVGALTCTKAGA 294 (295)
T ss_pred HHHHHHHHHHHhhHHHhcccCC
Confidence 9999999999999999999986
No 13
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=100.00 E-value=3.7e-40 Score=338.30 Aligned_cols=290 Identities=22% Similarity=0.333 Sum_probs=236.9
Q ss_pred cEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008168 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~ 285 (575)
+|+|+|.+++|++... +++|.+ +.......+..++||++.|+|++|++||.++.++|.+|+|.+|+.+++
T Consensus 1 ~il~iG~~~~D~~~~~---~~~~~~-------~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~ 70 (292)
T cd01174 1 KVVVVGSINVDLVTRV---DRLPKP-------GETVLGSSFETGPGGKGANQAVAAARLGARVAMIGAVGDDAFGDELLE 70 (292)
T ss_pred CEEEEeeceeEEEEEe---cCCCCC-------CCcEEeccceecCCCcHHHHHHHHHHcCCceEEEEEEcCCccHHHHHH
Confidence 4899999999999764 233321 112234567789999999999999999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccch--hhhccCcEEEEecccccccchHHHH
Q 008168 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI--DVLKEAKMFYFSTHSMLERNMKSTT 363 (575)
Q Consensus 286 ~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~--~~l~~ad~v~~sg~~l~~~~~~e~~ 363 (575)
.|++.||+++++.+.++.+|+++++.++.+|++++. .+.++...++++.+.. ..+..++++|+++. .+.+.+
T Consensus 71 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~ 144 (292)
T cd01174 71 NLREEGIDVSYVEVVVGAPTGTAVITVDESGENRIV-VVPGANGELTPADVDAALELIAAADVLLLQLE-----IPLETV 144 (292)
T ss_pred HHHHcCCCceEEEEcCCCCceeEEEEEcCCCceEEE-EeCCCCCCCCHHHHHHHHHhcccCCEEEEeCC-----CCHHHH
Confidence 999999999999877888999999999888888775 4456666666665542 45789999999852 245677
Q ss_pred HHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcHH
Q 008168 364 LQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPE 443 (575)
Q Consensus 364 ~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e 443 (575)
..+++.++++|.+|+||++..... +..+++++|++++|++|++.|++.......+ ..+
T Consensus 145 ~~~~~~a~~~g~~v~~D~~~~~~~----------~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~------------~~~ 202 (292)
T cd01174 145 LAALRAARRAGVTVILNPAPARPL----------PAELLALVDILVPNETEAALLTGIEVTDEED------------AEK 202 (292)
T ss_pred HHHHHHHHhcCCEEEEeCCCcCcC----------cHHHHhhCCEEeeCHHHHHHHhCCCCCCHHH------------HHH
Confidence 889999999999999998743322 2567889999999999999999875432111 125
Q ss_pred HHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHH
Q 008168 444 VIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTI 523 (575)
Q Consensus 444 ~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl 523 (575)
.++.+++.|++.||||+|.+|+++++++...++++ ++++ ++||+||||+|+|||+++|++| +++++|+
T Consensus 203 ~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~~~--~vdt~GaGD~F~ag~l~~l~~g-------~~~~~al 270 (292)
T cd01174 203 AARLLLAKGVKNVIVTLGAKGALLASGGEVEHVPA---FKVK--AVDTTGAGDTFIGALAAALARG-------LSLEEAI 270 (292)
T ss_pred HHHHHHHcCCCEEEEEeCCCceEEEeCCceEEecC---CCcc--cCCCCCcHHHHHHHHHHHHHcC-------CCHHHHH
Confidence 66777788999999999999999998775444443 3444 7999999999999999999999 9999999
Q ss_pred HHHHHHHHHHhcccccCCCCCC
Q 008168 524 KYAIDCGVRDQWSQARTLGYPP 545 (575)
Q Consensus 524 ~~A~aaAA~~v~~~G~~~g~pt 545 (575)
++|+++|++++++.|+..++|+
T Consensus 271 ~~a~~~Aa~~~~~~G~~~~~~~ 292 (292)
T cd01174 271 RFANAAAALSVTRPGAQPSIPT 292 (292)
T ss_pred HHHHHHHHHHhcCcCCCCCCCC
Confidence 9999999999999999988875
No 14
>PRK15074 inosine/guanosine kinase; Provisional
Probab=100.00 E-value=2.3e-40 Score=356.68 Aligned_cols=322 Identities=14% Similarity=0.172 Sum_probs=244.4
Q ss_pred CCCCcEEEECcceeeeeccCC-----------CCCCCcchhhhhhhcccccCCCc-eEEecCChHHHHHHHHHHcC-CCe
Q 008168 202 GWPPLVCCFGSAQHAFVPSGR-----------PANRLIDHEIHERMKDALWAPEK-FIRSPGGCTGSAAIALARLG-GKV 268 (575)
Q Consensus 202 ~~~~~VlviG~~~vDii~~~~-----------~~~~lp~~e~~~~~~d~~~~~~~-~~~~~GG~a~NvA~aLarLG-~~v 268 (575)
+++-+|++||++++|+...+. ....+.+++.+..+.+.+..... ....+||+++|+|++|++|| .++
T Consensus 31 ~~~~~v~g~GNaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~~~~~~~~GGsaaNtA~~lArLGG~~~ 110 (434)
T PRK15074 31 TSRTYIVGIDQTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNNLITHEFAGGTIGNTLHNYSVLADDRS 110 (434)
T ss_pred CCCCcEEEeCCceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhccccccccCCCHHHHHHHHHHHcCCCCe
Confidence 455689999999999998752 12234445556656555432111 45679999999999999996 999
Q ss_pred EEEEEeCCC-hHHHHHHHHHH--hCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCc
Q 008168 269 AFMGKLGDD-EYGQAMLYYMN--VNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAK 345 (575)
Q Consensus 269 ~lig~VG~D-~~G~~l~~~L~--~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad 345 (575)
.|+|.||+| .+|+++++.|. +.||++.++...+ .+|++|+++++++|+|++. .+.++...+++++++...++.++
T Consensus 111 ~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~-~~TG~~~VlV~~dGeRt~~-t~~GA~~~Lt~edld~~~i~~a~ 188 (434)
T PRK15074 111 VLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVD-GPIGRCFTLISEDGERTFA-ISPGHMNQLRPESIPEDVIAGAS 188 (434)
T ss_pred EEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEcC-CCCEEEEEEECCCCCEEEE-EecChhhcCChhHCCHhHhccCC
Confidence 999999999 69999999997 6899999987554 5899999999999999886 55788889999988877899999
Q ss_pred EEEEeccccc---ccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCC
Q 008168 346 MFYFSTHSML---ERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIK 422 (575)
Q Consensus 346 ~v~~sg~~l~---~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~ 422 (575)
++|++|+.+. .+...+++.++++.|+++|++|+||++.+..+|...+.+ ...+++++|||++|++|+..|+|..
T Consensus 189 ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~~~v~~~~~~~---~e~l~~~vDILf~NeeEa~~LtG~~ 265 (434)
T PRK15074 189 ALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFVIEDNPQWW---QEFLKEHVSILAMNEDEAEALTGES 265 (434)
T ss_pred EEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcchhhccccHHHH---HHHHHhcCCEEEcCHHHHHHHhCCC
Confidence 9999998654 223467888999999999999999999765444322222 2345579999999999999999853
Q ss_pred CCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCc-----e-----------------------
Q 008168 423 PTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDD-----G----------------------- 474 (575)
Q Consensus 423 ~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~-----~----------------------- 474 (575)
. ..+++..+. .+++.||||+|++|++++..+.. .
T Consensus 266 d-----------------~eea~~~L~-~~~~~VVVTlG~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (434)
T PRK15074 266 D-----------------PLLASDKAL-DWVDLVLCTAGPIGLYMAGYTEDEAKRETQHPLLPGAIAEFNRYEFSRAMRK 327 (434)
T ss_pred C-----------------HHHHHHHHH-cCCCEEEEEECCCCEEEEecccccccCceeeeccccccccccchhcccchhc
Confidence 1 123444454 46899999999999999753221 1
Q ss_pred -----------eEecccCCCCCCcccCccChhHHHHHHHHHHHHcCC-C------------CCCCchhHHHHHHHHHHHH
Q 008168 475 -----------AVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQP-H------------LITDKGYLVRTIKYAIDCG 530 (575)
Q Consensus 475 -----------~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~-~------------~~~d~~sl~eAl~~A~aaA 530 (575)
+++++...+++ +||||||||+|+|||+|+|++|. + ++.+..++.+|+++|+++|
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~--~vDttGAGD~f~~gfl~~l~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a 405 (434)
T PRK15074 328 KDCQNPLRVYSHIAPYMGGPEK--IMNTNGAGDGALSALLHDITANSYHRSNVPNSSKHKRTYLTYSSLAQVCKYANRVS 405 (434)
T ss_pred cccccccccccccCcccCCCCc--ceeCCCcHHHHHHHHHHHHHCCCcccccccccccccccccccCCHHHHHHHHHHHH
Confidence 22221001343 89999999999999999999982 0 0001127999999999999
Q ss_pred HHHhccccc--CCCCCCHHH
Q 008168 531 VRDQWSQAR--TLGYPPKEG 548 (575)
Q Consensus 531 A~~v~~~G~--~~g~pt~ee 548 (575)
+.++++.|+ ..++|+.++
T Consensus 406 ~~vi~~~G~~~~~~~p~~~~ 425 (434)
T PRK15074 406 YEVLNQHSPRLSRGLPERED 425 (434)
T ss_pred HHHHhhcCCCCCCCCCCccc
Confidence 999999999 556777554
No 15
>PRK09850 pseudouridine kinase; Provisional
Probab=100.00 E-value=6.2e-40 Score=341.44 Aligned_cols=305 Identities=18% Similarity=0.185 Sum_probs=240.4
Q ss_pred CCCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008168 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 202 ~~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~ 281 (575)
++++.|+|+|++++|++.... .|.+ .....+......+||+++|+|++|++||.++.++|.||+|.+|+
T Consensus 2 ~~~~~i~~iG~~~vD~~~~~~----~~~~-------~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~ig~vG~D~~g~ 70 (313)
T PRK09850 2 REKDYVVIIGSANIDVAGYSH----ESLN-------YADSNPGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQ 70 (313)
T ss_pred CCCCcEEEECcEEEeeeccCC----CcCc-------CCCCCceEEEEeCCcHHHHHHHHHHHcCCCeEEEEEecCchhHH
Confidence 467799999999999997641 1211 11113456788999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccc--hhhhccCcEEEEecccccccch
Q 008168 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN--IDVLKEAKMFYFSTHSMLERNM 359 (575)
Q Consensus 282 ~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~--~~~l~~ad~v~~sg~~l~~~~~ 359 (575)
++++.|++.||++.++...++.+|+.++++++++|++.+.+..+++...++...+. .+.++.++++|+++. .+
T Consensus 71 ~i~~~l~~~gVd~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~ 145 (313)
T PRK09850 71 SLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDMNISNAITAEYLAQHREFIQRAKVIVADCN-----IS 145 (313)
T ss_pred HHHHHHHHcCCCchheeecCCCCceEEEEEecCCCCEEEEecCchHhhhCCHHHHHHHHHHHhcCCEEEEeCC-----CC
Confidence 99999999999999988888888999999999889987754444555556655443 245788999998752 23
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccC
Q 008168 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVH 439 (575)
Q Consensus 360 ~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~ 439 (575)
.+.+..+++.+ .|++|+||++. .|. ...+.++++++|+|++|.+|+..|+|.......+
T Consensus 146 ~~~~~~~~~~~--~g~~v~~D~~~---~~~-----~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~~----------- 204 (313)
T PRK09850 146 EEALAWILDNA--ANVPVFVDPVS---AWK-----CVKVRDRLNQIHTLKPNRLEAETLSGIALSGRED----------- 204 (313)
T ss_pred HHHHHHHHHhc--cCCCEEEEcCC---HHH-----HHHHHhhhccceEEccCHHHHHHHhCCCCCCHHH-----------
Confidence 45555565543 58899999873 332 1245678889999999999999999865322111
Q ss_pred CcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCc-eeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchh
Q 008168 440 YEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDD-GAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGY 518 (575)
Q Consensus 440 ~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~-~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~s 518 (575)
..+.++.+.+.|++.||||+|++|++++.+++. .++++ ++++ +||||||||+|+|||+++|++| ++
T Consensus 205 -~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~---~~~~--vvDttGAGDaF~agfi~~l~~g-------~~ 271 (313)
T PRK09850 205 -VAKVAAWFHQHGLNRLVLSMGGDGVYYSDISGESGWSAP---IKTN--VINVTGAGDAMMAGLASCWVDG-------MP 271 (313)
T ss_pred -HHHHHHHHHHcCCCEEEEEeCCceEEEEcCCCCeEecCC---CCcc--cccCCCcHHHHHHHHHHHHHcC-------CC
Confidence 124556676789999999999999999986433 33333 3444 8999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCCC
Q 008168 519 LVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEPD 556 (575)
Q Consensus 519 l~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~~ 556 (575)
+.+|+++|+++|+++++..+.....|++++|+.+++++
T Consensus 272 ~~eal~~a~a~aa~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (313)
T PRK09850 272 FAESVRFAQGCSSMALSCEYTNNPDLSIANVISLVENA 309 (313)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcccCHHHHHHHHHHh
Confidence 99999999999999999999999999999999998753
No 16
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.7e-39 Score=333.61 Aligned_cols=287 Identities=13% Similarity=0.106 Sum_probs=228.4
Q ss_pred cEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008168 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~ 285 (575)
+|+|||++++|++... +++|.+ +.......+...+|| ++|+|++|++||.++.++|.||+|.+|+++++
T Consensus 1 ~i~~iG~~~~D~i~~~---~~~~~~-------~~~~~~~~~~~~~GG-~~Nva~~l~~lG~~~~~~~~vG~D~~g~~i~~ 69 (289)
T cd01944 1 KVLVIGAAVVDIVLDV---DKLPAS-------GGDIEAKSKSYVIGG-GFNVMVAASRLGIPTVNAGPLGNGNWADQIRQ 69 (289)
T ss_pred CeEEEcceeEEEEeec---ccCCCC-------CCccccceeeeccCc-HHHHHHHHHHcCCCeEEEEEecCChHHHHHHH
Confidence 4899999999999865 344421 122234567899999 99999999999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccc-hHHHHH
Q 008168 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERN-MKSTTL 364 (575)
Q Consensus 286 ~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~-~~e~~~ 364 (575)
.|++.||+++++.+. +..|+.++++++.+|++++. ...++...++++.++...+..++++|++++.+.... ..+.+.
T Consensus 70 ~l~~~gi~~~~~~~~-~~~t~~~~~~~~~~g~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (289)
T cd01944 70 AMRDEGIEILLPPRG-GDDGGCLVALVEPDGERSFI-SISGAEQDWSTEWFATLTVAPYDYVYLSGYTLASENASKVILL 147 (289)
T ss_pred HHHHcCCcccccccc-CCCCeEEEEEEcCCCceEEE-EeCCccCCCCHHHhccccCCCCCEEEEeCccccCcchhHHHHH
Confidence 999999999988764 56788888888888998775 445665566666655434678999999997553322 456667
Q ss_pred HHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcHHH
Q 008168 365 QAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEV 444 (575)
Q Consensus 365 ~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~ 444 (575)
++++.++ .+.+|+||++.+...|. ...+..+++++|++++|++|+..|+|..... ....
T Consensus 148 ~~~~~~~-~~~~v~~D~~~~~~~~~-----~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~~---------------~~~~ 206 (289)
T cd01944 148 EWLEALP-AGTTLVFDPGPRISDIP-----DTILQALMAKRPIWSCNREEAAIFAERGDPA---------------AEAS 206 (289)
T ss_pred HHHHhcc-CCCEEEEcCcccccccC-----HHHHHHHHhcCCEEccCHHHHHHHhCCCCcc---------------hHHH
Confidence 7776654 57899999997766553 4567888999999999999999999864321 1133
Q ss_pred HHHHhhcCCCEEEEEcCCCcEEEEEcCCc-eeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHH
Q 008168 445 IAPLWHENLKVLFVTNGTSKVHYYTKEDD-GAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTI 523 (575)
Q Consensus 445 ~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~-~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl 523 (575)
+..+.+.+++.||||+|++|++++.+++. .++++ ++++ ++|||||||+|+|||+++|++| +++++|+
T Consensus 207 ~~~~~~~~~~~vvvt~G~~Ga~~~~~~~~~~~~~~---~~~~--vvDt~GAGDaf~ag~l~~~~~g-------~~~~~a~ 274 (289)
T cd01944 207 ALRIYAKTAAPVVVRLGSNGAWIRLPDGNTHIIPG---FKVK--AVDTIGAGDTHAGGMLAGLAKG-------MSLADAV 274 (289)
T ss_pred HHHHHhccCCeEEEEECCCcEEEEecCCCeEEecC---CCCC--CccCCCchHHHHHHHHHHHHcC-------CCHHHHH
Confidence 56677788999999999999999985543 33333 4454 7999999999999999999999 9999999
Q ss_pred HHHHHHHHHHhcccc
Q 008168 524 KYAIDCGVRDQWSQA 538 (575)
Q Consensus 524 ~~A~aaAA~~v~~~G 538 (575)
++|+++|+++|++.|
T Consensus 275 ~~a~a~aa~~~~~~G 289 (289)
T cd01944 275 LLANAAAAIVVTRSG 289 (289)
T ss_pred HHHHHHHHhhhccCC
Confidence 999999999999876
No 17
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=100.00 E-value=2.8e-39 Score=331.88 Aligned_cols=291 Identities=25% Similarity=0.367 Sum_probs=235.2
Q ss_pred cEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008168 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~ 285 (575)
+|+|||++++|++..... ....+..+...+||+++|+|++|++||.++.++|.||+|.+|+++++
T Consensus 1 ~i~~iG~~~iD~~~~~~~---------------~~~~~~~~~~~~GG~~~N~a~~la~lg~~~~~i~~vG~D~~g~~i~~ 65 (294)
T cd01166 1 DVVTIGEVMVDLSPPGGG---------------RLEQADSFRKFFGGAEANVAVGLARLGHRVALVTAVGDDPFGRFILA 65 (294)
T ss_pred CeEEechhheeeecCCCC---------------ccchhhccccccCChHHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 589999999999965410 01134667788999999999999999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEec-CCccccCCccccchhhhccCcEEEEecccc-cccchHHHH
Q 008168 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVK-PCAEDALTKSEINIDVLKEAKMFYFSTHSM-LERNMKSTT 363 (575)
Q Consensus 286 ~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~-~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l-~~~~~~e~~ 363 (575)
.|++.||+++++.+.++.+|+++++.++.+|++++.+.. .++...++.++++...+.++++||++++.. ..+.+.+.+
T Consensus 66 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 145 (294)
T cd01166 66 ELRREGVDTSHVRVDPGRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLDEAALAGADHLHLSGITLALSESAREAL 145 (294)
T ss_pred HHHHcCCCCceEEEeCCCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCCHHHHhCCCEEEEcCcchhhCHHHHHHH
Confidence 999999999999888888999999999877888765442 345556777777666788999999998643 222234788
Q ss_pred HHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcHH
Q 008168 364 LQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPE 443 (575)
Q Consensus 364 ~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e 443 (575)
..+++.+++.|+++++||+.+..+|. .....+.+..+++++|++++|..|++.|++..... + ..+
T Consensus 146 ~~~~~~~~~~~~~v~~D~~~~~~~~~-~~~~~~~~~~~~~~~dil~~n~~E~~~l~~~~~~~--~------------~~~ 210 (294)
T cd01166 146 LEALEAAKARGVTVSFDLNYRPKLWS-AEEAREALEELLPYVDIVLPSEEEAEALLGDEDPT--D------------AAE 210 (294)
T ss_pred HHHHHHHHHcCCEEEECCCCcchhcC-hHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCch--h------------HHH
Confidence 88999999999999999986554442 22334567788999999999999999998864211 0 124
Q ss_pred HHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHH
Q 008168 444 VIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTI 523 (575)
Q Consensus 444 ~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl 523 (575)
.++.+ ..|++.||||+|++|+++++++...++++ ++++ ++|||||||+|+|||+++|++| +++.+|+
T Consensus 211 ~~~~l-~~g~~~viit~G~~G~~~~~~~~~~~~~~---~~~~--~vdt~GAGD~f~a~~~~~l~~g-------~~~~~a~ 277 (294)
T cd01166 211 RALAL-ALGVKAVVVKLGAEGALVYTGGGRVFVPA---YPVE--VVDTTGAGDAFAAGFLAGLLEG-------WDLEEAL 277 (294)
T ss_pred HHHhh-cCCccEEEEEEcCCceEEEECCceEEeCC---CCcc--cccCCCchHHHHHHHHHHHHcC-------CCHHHHH
Confidence 44555 57999999999999999998865445543 3444 7999999999999999999999 9999999
Q ss_pred HHHHHHHHHHhccccc
Q 008168 524 KYAIDCGVRDQWSQAR 539 (575)
Q Consensus 524 ~~A~aaAA~~v~~~G~ 539 (575)
++|+++|+++|++.|+
T Consensus 278 ~~a~~~aa~~i~~~G~ 293 (294)
T cd01166 278 RFANAAAALVVTRPGD 293 (294)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999999986
No 18
>PTZ00247 adenosine kinase; Provisional
Probab=100.00 E-value=1.3e-39 Score=343.57 Aligned_cols=308 Identities=16% Similarity=0.176 Sum_probs=233.6
Q ss_pred CCCCcEEEECcceeeeeccCCC--CCCC-cch-------hhhhhhcccccCCCceEEecCChHHHHHHHHHHcC---C-C
Q 008168 202 GWPPLVCCFGSAQHAFVPSGRP--ANRL-IDH-------EIHERMKDALWAPEKFIRSPGGCTGSAAIALARLG---G-K 267 (575)
Q Consensus 202 ~~~~~VlviG~~~vDii~~~~~--~~~l-p~~-------e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG---~-~ 267 (575)
+..++|+|||++++|++..+.. ..++ |.. +.+.+....+.....+...+||+++|+|++|++|| . +
T Consensus 3 ~~~~~i~~iG~~~~D~~~~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~lg~~g~~~ 82 (345)
T PTZ00247 3 SAPKKLLGFGNPLLDISAHVSDEFLEKYGLELGSAILAEEKQLPIFEELESIPNVSYVPGGSALNTARVAQWMLQAPKGF 82 (345)
T ss_pred CCCceEEEECCceEEEEEeeCHHHHHHcCCCCCceeechHHHHHHHHHHHhccCceecCCCHHHHHHHHHHHHhcCCCCc
Confidence 4567899999999999987521 0001 110 10111111111224568899999999999999885 5 8
Q ss_pred eEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccch----hhhcc
Q 008168 268 VAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI----DVLKE 343 (575)
Q Consensus 268 v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~----~~l~~ 343 (575)
|.|+|.||+|.+|+++++.|++.||++.++. ..+.+|++++++++. |+|+++ .+++++..+++++++. ..+..
T Consensus 83 v~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~-~~~~~Tg~~~i~v~~-~~r~~~-~~~ga~~~l~~~~i~~~~~~~~l~~ 159 (345)
T PTZ00247 83 VCYVGCVGDDRFAEILKEAAEKDGVEMLFEY-TTKAPTGTCAVLVCG-KERSLV-ANLGAANHLSAEHMQSHAVQEAIKT 159 (345)
T ss_pred EEEEEEeccchhHHHHHHHHHHcCCeeeccc-cCCCCcEEEEEEEcC-CCcccc-cCcchhhcCChHHcCcHHHHHHHhh
Confidence 9999999999999999999999999998875 567789999998864 787664 5678888888887763 36889
Q ss_pred CcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCC
Q 008168 344 AKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKP 423 (575)
Q Consensus 344 ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~ 423 (575)
+++||++++.+. .+.+.+.++++.++++|++|++|++.+ .|. ......+.++++++|++++|++|++.|+|...
T Consensus 160 ~~~v~~~g~~~~--~~~~~~~~~~~~a~~~g~~v~~d~~~~--~~~--~~~~~~~~~~l~~~Dil~~N~~Ea~~l~g~~~ 233 (345)
T PTZ00247 160 AQLYYLEGFFLT--VSPNNVLQVAKHARESGKLFCLNLSAP--FIS--QFFFERLLQVLPYVDILFGNEEEAKTFAKAMK 233 (345)
T ss_pred CCEEEEEEEEec--ccHHHHHHHHHHHHHcCCEEEEECCcH--HHH--HHHHHHHHHHHhhCCEEEeCHHHHHHHhhccC
Confidence 999999986432 245788999999999999999997632 221 12234577899999999999999999998421
Q ss_pred CCcccccccccccccCCcHHHHHHHhh------cCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCC-cccCccChhH
Q 008168 424 TEEFDTKNNARSKFVHYEPEVIAPLWH------ENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTP-FTSDMSASGD 496 (575)
Q Consensus 424 ~~~~d~~~~~~~~~~~~~~e~~~~l~~------~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~-~vVDttGAGD 496 (575)
....+ ..+.+..+.+ .+++.||||+|++|+++++++...+++++ ++++ .+||||||||
T Consensus 234 ~~~~~------------~~~~~~~l~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~---~v~~~~vVDTtGAGD 298 (345)
T PTZ00247 234 WDTED------------LKEIAARIAMLPKYSGTRPRLVVFTQGPEPTLIATKDGVTSVPVP---PLDQEKIVDTNGAGD 298 (345)
T ss_pred CCccC------------HHHHHHHHHhccccccCCCCEEEEecCCCceEEEECCEEEEEecc---ccCCCCccCCCChHH
Confidence 11011 1234444432 25789999999999999998765556653 3321 2799999999
Q ss_pred HHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcccccC
Q 008168 497 GIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQART 540 (575)
Q Consensus 497 aF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~ 540 (575)
+|+|||+++|++| +++++|+++|+++|+++|++.|+.
T Consensus 299 aF~agfl~~l~~g-------~~~~~al~~a~~aAa~~v~~~Ga~ 335 (345)
T PTZ00247 299 AFVGGFLAQYANG-------KDIDRCVEAGHYSAQVIIQHNGCT 335 (345)
T ss_pred HHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHhccCCC
Confidence 9999999999999 999999999999999999999996
No 19
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=100.00 E-value=2.9e-40 Score=339.73 Aligned_cols=298 Identities=26% Similarity=0.370 Sum_probs=240.5
Q ss_pred CCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008168 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l 283 (575)
|.+|+|||++++|++.... ++ ..+.. +.......+||++.|+|++|++||.+|.++|.||+|.+|+.+
T Consensus 1 m~~v~~iG~~~iD~~~~~~---~~--------~~~~~-~~~~~~~~~GG~~~n~a~~l~~LG~~v~~i~~vG~D~~g~~i 68 (301)
T PF00294_consen 1 MKKVLVIGEVNIDIIGYVD---RF--------KGDLV-RVSSVKRSPGGAGANVAIALARLGADVALIGKVGDDFFGEII 68 (301)
T ss_dssp EEEEEEESEEEEEEEEESS---SH--------TTSEE-EESEEEEEEESHHHHHHHHHHHTTSEEEEEEEEESSHHHHHH
T ss_pred CCcEEEECccceEEEeecC---Cc--------CCcce-ecceEEEecCcHHHHHHHHHHhccCcceEEeeccCcchhhhh
Confidence 6789999999999998763 11 01222 457889999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHH
Q 008168 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTT 363 (575)
Q Consensus 284 ~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e~~ 363 (575)
++.|++.||+++++.+.++.+|++++++++++|++++. ...++...++.+++....+..++++|+++..+..+.+...+
T Consensus 69 ~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (301)
T PF00294_consen 69 LEELKERGVDTSYIPRDGDEPTGRCLIIVDPDGERTFV-FSPGANSDLTPDELDEEAIDEADILHLSGVSLPEGIPEDLL 147 (301)
T ss_dssp HHHHHHTTEEETTEEEESSSEEEEEEEEEETTSEEEEE-EEEGGGGGGGHHHHHHHHHHTESEEEEESGHCSTTSHHHHH
T ss_pred hhccccccccccccccccccccceeEeeecccccceee-eccccccccccccccccccccccceeeccccccccccccee
Confidence 99999999999999988888999999999988888775 44566666666666567888999999999222333455666
Q ss_pred HHHHHHHhhcC--CEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCc
Q 008168 364 LQAIKISKQFG--GIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYE 441 (575)
Q Consensus 364 ~~~l~~ak~~G--~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~ 441 (575)
..+.+.++..+ .+++.+ +.|.. ..+.+.++++++|++++|++|+..+++....+..+ .
T Consensus 148 ~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~------------~ 207 (301)
T PF00294_consen 148 EALAKAAKKNGPFDPVFRD-----PSWDD---LREDLKELLPYADILKPNEEEAEALTGSKIDDPED------------A 207 (301)
T ss_dssp HHHHHHHHHTTEEEEEEEG-----GGSHH---HHHHHHHHHHTSSEEEEEHHHHHHHHTCSTSSHHH------------H
T ss_pred eeccccccccccccccccc-----ccccc---cchhhhhhccccchhccccccccccccccccchhh------------h
Confidence 66666667666 234444 33321 45778888899999999999999999987432211 1
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHH
Q 008168 442 PEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVR 521 (575)
Q Consensus 442 ~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~e 521 (575)
...+.+++..|++.+|||+|.+|+++++.+...+++++ ++++ ++|||||||+|+|||+++|+++ +++++
T Consensus 208 ~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~--~~~~--vvdttGAGD~f~A~~i~~l~~~-------~~~~~ 276 (301)
T PF00294_consen 208 LAALRELQARGVKIVIVTLGEDGALYYTNDESYHVPPV--PPVN--VVDTTGAGDAFAAGFIYGLLSG-------MSLEE 276 (301)
T ss_dssp HHHHHHHHHTTSSEEEEEEGGGEEEEEETTEEEEEEEE--SSSS--SSSCTTHHHHHHHHHHHHHHTT-------HHHHH
T ss_pred hccccccchhhhhhhhccccccCccccccccccccccc--cccc--ccceeccchhhhHHHHHHHHcC-------CCHHH
Confidence 24555666689999999999999999997766677664 2344 8999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhcccccCCCCCC
Q 008168 522 TIKYAIDCGVRDQWSQARTLGYPP 545 (575)
Q Consensus 522 Al~~A~aaAA~~v~~~G~~~g~pt 545 (575)
|+++|+++|+++|++.|+..++||
T Consensus 277 a~~~a~~~aa~~v~~~g~~~~~p~ 300 (301)
T PF00294_consen 277 ALKFANAAAALKVQQPGPRSPLPT 300 (301)
T ss_dssp HHHHHHHHHHHHHTSSSSSGGTT-
T ss_pred HHHHHHHHHHHHhCCCCCcCCCCC
Confidence 999999999999999999988887
No 20
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=3.9e-39 Score=342.64 Aligned_cols=316 Identities=18% Similarity=0.126 Sum_probs=245.6
Q ss_pred CCCCcEEEEC-cceeeeeccCC-----------CCCCCcchhhhhhhcccccC--------CCceEEecCChHHHHHHHH
Q 008168 202 GWPPLVCCFG-SAQHAFVPSGR-----------PANRLIDHEIHERMKDALWA--------PEKFIRSPGGCTGSAAIAL 261 (575)
Q Consensus 202 ~~~~~VlviG-~~~vDii~~~~-----------~~~~lp~~e~~~~~~d~~~~--------~~~~~~~~GG~a~NvA~aL 261 (575)
..+++|++|| ++++|++..+. ....+.+++.+..+...+.. .......+||+++|++++|
T Consensus 17 ~~~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~l 96 (367)
T PLN02379 17 PRPPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTIRGL 96 (367)
T ss_pred CCCCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHHHHH
Confidence 3467899999 99999997752 22334455666655555421 2247788999999999999
Q ss_pred HH-cCCCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhh
Q 008168 262 AR-LGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDV 340 (575)
Q Consensus 262 ar-LG~~v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~ 340 (575)
++ ||.++.|+|.||+|.+|+++++.|++.||++.++.. .+.+|+.|+++++++|+|++. .+.++...++.+++....
T Consensus 97 a~~LG~~~~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~-~~~~Tg~~~v~v~~dgert~~-~~lg~~~~l~~~~~~~~~ 174 (367)
T PLN02379 97 SAGFGVSTGIIGACGDDEQGKLFVSNMGFSGVDLSRLRA-KKGPTAQCVCLVDALGNRTMR-PCLSSAVKLQADELTKED 174 (367)
T ss_pred HHhcCCCEEEEEEeCCChhHHHHHHHHHHcCCCccCccc-CCCCCceEEEEECCCCCcccc-CCccccccCChhHCCHHH
Confidence 96 999999999999999999999999999999988755 345899999999999998764 445666677777887778
Q ss_pred hccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhc--cCeEeecCHHHHHHh
Q 008168 341 LKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT--LADVIEVTKQELEFL 418 (575)
Q Consensus 341 l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~--~aDIl~~N~~Ea~~L 418 (575)
+++++++|++ +.. ...+.+.++++.++++|++|++|++..... ..+++.+.+++. ++|+|++|++|+..+
T Consensus 175 ~~~~~~v~v~-~~~---~~~~~~~~~~~~A~~~g~~v~lD~s~~~~v----~~~r~~l~~ll~~~~vDilf~Ne~Ea~~l 246 (367)
T PLN02379 175 FKGSKWLVLR-YGF---YNLEVIEAAIRLAKQEGLSVSLDLASFEMV----RNFRSPLLQLLESGKIDLCFANEDEAREL 246 (367)
T ss_pred HhcCCEEEEE-ccc---CCHHHHHHHHHHHHHcCCEEEEeccchhhh----hhhhHHHHHHhhcCCccEEEcCHHHHHHH
Confidence 8999999999 432 236788899999999999999998743211 123455666664 899999999999999
Q ss_pred hCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHH
Q 008168 419 CGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGI 498 (575)
Q Consensus 419 ~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF 498 (575)
++....+ ..+.+..++..+++.+|||+|++|++++.+++..+++++ ++. .+||||||||+|
T Consensus 247 ~~~~~~~---------------~~~~~~~~l~~~~~~vvvT~G~~Ga~~~~~~~~~~v~a~---~~~-~vVDTtGAGDaF 307 (367)
T PLN02379 247 LRGEQES---------------DPEAALEFLAKYCNWAVVTLGSKGCIARHGKEVVRVPAI---GET-NAVDATGAGDLF 307 (367)
T ss_pred hcCCCCC---------------CHHHHHHHHHhcCCEEEEEECCCCeEEEECCEEEEecCC---CCC-CcccCCChhHHH
Confidence 8743211 134455566678999999999999999988755555542 221 279999999999
Q ss_pred HHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhh
Q 008168 499 VAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEV 553 (575)
Q Consensus 499 ~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l 553 (575)
+|||+|+|++| +++++|+++|+++|+.+|++.|+......++++...+
T Consensus 308 aagfl~gl~~G-------~~l~~a~~~g~~aAa~vi~~~G~~~~~~~~~~~~~~~ 355 (367)
T PLN02379 308 ASGFLYGLIKG-------LSLEECCKVGACSGGSVVRALGGEVTPENWQWMYKQM 355 (367)
T ss_pred HHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHH
Confidence 99999999999 9999999999999999999999974434444444443
No 21
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=100.00 E-value=2e-38 Score=324.42 Aligned_cols=283 Identities=18% Similarity=0.202 Sum_probs=227.2
Q ss_pred cEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008168 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~ 285 (575)
+|+|+|++++|++... +++|.+ ........+...+||+++|+|++|++||.++.++|.+|+|.+|+++++
T Consensus 1 ~i~~iG~~~iD~~~~~---~~~p~~-------~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~ 70 (284)
T cd01945 1 RVLGVGLAVLDLIYLV---ASFPGG-------DGKIVATDYAVIGGGNAANAAVAVARLGGQARLIGVVGDDAIGRLILA 70 (284)
T ss_pred CEEEECcceeEEEEEe---ccCCCC-------CCeEEEeEEEEecCCHHHHHHHHHHHcCCCeEEEEEecCchHHHHHHH
Confidence 5899999999999875 234421 111234678899999999999999999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHHH
Q 008168 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQ 365 (575)
Q Consensus 286 ~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~ 365 (575)
.|++.||++.++...++.+|+++++ +..+|++++... .+....+..++++...++++++||++++. .+...+
T Consensus 71 ~l~~~gI~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~i~~~~------~~~~~~ 142 (284)
T cd01945 71 ELAAEGVDTSFIVVAPGARSPISSI-TDITGDRATISI-TAIDTQAAPDSLPDAILGGADAVLVDGRQ------PEAALH 142 (284)
T ss_pred HHHHcCCCccceeecCCCCCccEEE-EccCCCceEEEe-cCCCCCCCcccCCHHHhCcCCEEEEcCCC------HHHHHH
Confidence 9999999999999887778888876 445666665433 34445566677766668999999998642 356788
Q ss_pred HHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcHHHH
Q 008168 366 AIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVI 445 (575)
Q Consensus 366 ~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~ 445 (575)
+++.+++.|.++++|++.... .. +.++++++|++++|++|++.+++... .+.+
T Consensus 143 ~~~~~~~~g~~v~~~~~~~~~--------~~-~~~~~~~~dil~~n~~e~~~l~~~~~------------------~~~~ 195 (284)
T cd01945 143 LAQEARARGIPIPLDLDGGGL--------RV-LEELLPLADHAICSENFLRPNTGSAD------------------DEAL 195 (284)
T ss_pred HHHHHHHcCCCeeEeccCCcc--------cc-hHHHhccCCEEEeChhHHhhhcCCCH------------------HHHH
Confidence 899999999977777653221 12 66788999999999999999887531 1445
Q ss_pred HHHhhcCCCEEEEEcCCCcEEEEE-cCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHH
Q 008168 446 APLWHENLKVLFVTNGTSKVHYYT-KEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIK 524 (575)
Q Consensus 446 ~~l~~~g~k~VVVT~G~~Ga~v~~-~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~ 524 (575)
+.+...+++.||||+|++|+++++ ++...++++ ++++ ++|||||||+|+|||+++|++| +++++|++
T Consensus 196 ~~l~~~~~~~vivt~G~~G~~~~~~~~~~~~~~~---~~~~--vvDt~GAGDaf~ag~l~~l~~g-------~~~~~al~ 263 (284)
T cd01945 196 ELLASLGIPFVAVTLGEAGCLWLERDGELFHVPA---FPVE--VVDTTGAGDVFHGAFAHALAEG-------MPLREALR 263 (284)
T ss_pred HHHHhcCCcEEEEEECCCCeEEEcCCCCEEecCC---Cccc--cccCCCcHHHHHHHHHHHHHcC-------CCHHHHHH
Confidence 566678999999999999999998 443334443 3454 8999999999999999999999 99999999
Q ss_pred HHHHHHHHHhcccccCCCCCC
Q 008168 525 YAIDCGVRDQWSQARTLGYPP 545 (575)
Q Consensus 525 ~A~aaAA~~v~~~G~~~g~pt 545 (575)
+|+++|+++|++.|+..++|+
T Consensus 264 ~a~~~Aa~~~~~~G~~~~~~~ 284 (284)
T cd01945 264 FASAAAALKCRGLGGRAGLPT 284 (284)
T ss_pred HHHHHHHHHHhccCCcccCCC
Confidence 999999999999999988885
No 22
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=3.3e-38 Score=321.79 Aligned_cols=275 Identities=19% Similarity=0.191 Sum_probs=223.0
Q ss_pred cEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008168 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~ 285 (575)
+|+|+|++++|++..+ +++|.+ +...........+||++.|+|++|++||.++.++|.||+|.+|+++++
T Consensus 1 ~v~~iG~~~~D~~~~v---~~~p~~-------~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~ 70 (279)
T cd01942 1 DVAVVGHLNYDIILKV---ESFPGP-------FESVLVKDLRREFGGSAGNTAVALAKLGLSPGLVAAVGEDFHGRLYLE 70 (279)
T ss_pred CEEEEecceeeeEeec---ccCCCC-------CceEecceeeecCCcHHHHHHHHHHHcCCCceEEEEecCCcchHHHHH
Confidence 5899999999999765 345531 112245778899999999999999999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHHH
Q 008168 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQ 365 (575)
Q Consensus 286 ~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~ 365 (575)
.|++.||+++++...++.+|+.++++++.+|++.+. ..+++...+++++ ....+..++++|+++.. .+.+
T Consensus 71 ~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~ 140 (279)
T cd01942 71 ELREEGVDTSHVRVVDEDSTGVAFILTDGDDNQIAY-FYPGAMDELEPND-EADPDGLADIVHLSSGP--------GLIE 140 (279)
T ss_pred HHHHcCCCccceEEcCCCCcceEEEEEcCCCCEEEE-ecCCcccccccCC-chhhhcccCEEEeCCch--------HHHH
Confidence 999999999999777777899999999887877654 4566666666555 44567899999998642 4567
Q ss_pred HHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHH---HhhCCCCCCcccccccccccccCCcH
Q 008168 366 AIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELE---FLCGIKPTEEFDTKNNARSKFVHYEP 442 (575)
Q Consensus 366 ~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~---~L~g~~~~~~~d~~~~~~~~~~~~~~ 442 (575)
+++.+++.|++|+||++.+...|. .+.+..+++++|++++|++|+. .+++... .
T Consensus 141 ~~~~~~~~g~~v~~D~~~~~~~~~-----~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~------------------~ 197 (279)
T cd01942 141 LARELAAGGITVSFDPGQELPRLS-----GEELEEILERADILFVNDYEAELLKERTGLSE------------------A 197 (279)
T ss_pred HHHHHHHcCCeEEEcchhhhhhcc-----HHHHHHHHhhCCEEecCHHHHHHHHhhcCCCh------------------H
Confidence 778888889999999987655553 3456778899999999999994 4444321 0
Q ss_pred HHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHH
Q 008168 443 EVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRT 522 (575)
Q Consensus 443 e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eA 522 (575)
. ...+++.||||+|++|+++++++..++++++ ++++ ++|||||||+|+|||+++|++| +++.+|
T Consensus 198 ~-----~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~--~~~~--vvDttGAGDaf~a~~i~~l~~g-------~~l~~a 261 (279)
T cd01942 198 E-----LASGVRVVVVTLGPKGAIVFEDGEEVEVPAV--PAVK--VVDTTGAGDAFRAGFLYGLLRG-------YDLEES 261 (279)
T ss_pred H-----HhcCCCEEEEEECCCceEEEECCceEEccCc--CcCC--CcCCCCchHHHHHHHHHHHHcC-------CCHHHH
Confidence 1 1268999999999999999997765555442 1444 8999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhccccc
Q 008168 523 IKYAIDCGVRDQWSQAR 539 (575)
Q Consensus 523 l~~A~aaAA~~v~~~G~ 539 (575)
+++|+++|+++|++.|+
T Consensus 262 l~~a~~~Aa~~~~~~G~ 278 (279)
T cd01942 262 LRLGNLAASLKVERRGA 278 (279)
T ss_pred HHHHHHHHHHHHcccCC
Confidence 99999999999999986
No 23
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=100.00 E-value=1.7e-37 Score=319.16 Aligned_cols=291 Identities=24% Similarity=0.341 Sum_probs=236.0
Q ss_pred CcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHHHHhC
Q 008168 211 GSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVN 290 (575)
Q Consensus 211 G~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~~L~~~ 290 (575)
|.+++|++..+ +++|. .+.......+...+||++.|+|++|++||.++.++|.||+|.+|+++++.|++.
T Consensus 1 G~~~~D~~~~~---~~~p~-------~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~ 70 (293)
T TIGR02152 1 GSINMDLVLRT---DRLPK-------PGETVHGHSFQIGPGGKGANQAVAAARLGAEVSMIGKVGDDAFGDELLENLKSN 70 (293)
T ss_pred CCceEeEEEEe---CCCCC-------CCCcEecCCceecCCCcHHHHHHHHHHCCCCEEEEEEecCCccHHHHHHHHHHc
Confidence 78999999876 34442 122334567789999999999999999999999999999999999999999999
Q ss_pred CCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccc--hhhhccCcEEEEecccccccchHHHHHHHHH
Q 008168 291 NVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN--IDVLKEAKMFYFSTHSMLERNMKSTTLQAIK 368 (575)
Q Consensus 291 GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~--~~~l~~ad~v~~sg~~l~~~~~~e~~~~~l~ 368 (575)
||++.++.+.++.+|++++++++.+|++++. ..+++...+.++++. .+.+..++++++++ ..+.+.+.++++
T Consensus 71 gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 144 (293)
T TIGR02152 71 GIDTEYVGTVKDTPTGTAFITVDDTGENRIV-VVAGANAELTPEDIDAAEALIAESDIVLLQL-----EIPLETVLEAAK 144 (293)
T ss_pred CCCeeEEEEcCCCCCceEEEEEcCCCCEEEE-EECCcCCcCCHHHHHHHHhhhccCCEEEEec-----CCCHHHHHHHHH
Confidence 9999999887778899999999888888765 446666667776665 34678999999874 234567888999
Q ss_pred HHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcHHHHHHH
Q 008168 369 ISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPL 448 (575)
Q Consensus 369 ~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l 448 (575)
.++++|++|++|++.... .....+++++|++++|.+|+..|++....+..+ ..+.++.+
T Consensus 145 ~~~~~~~~v~~D~~~~~~---------~~~~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~------------~~~~~~~l 203 (293)
T TIGR02152 145 IAKKHGVKVILNPAPAIK---------DLDDELLSLVDIITPNETEAEILTGIEVTDEED------------AEKAAEKL 203 (293)
T ss_pred HHHHcCCEEEEECCcCcc---------cchHHHHhcCCEEccCHHHHHHHhCCCCCCcch------------HHHHHHHH
Confidence 999999999999864321 112567889999999999999999865322111 12556677
Q ss_pred hhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHH
Q 008168 449 WHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAID 528 (575)
Q Consensus 449 ~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~a 528 (575)
+..|++.||||+|++|+++++++...+++ .++++ ++||+||||+|+|||+++|++| +++.+|+++|++
T Consensus 204 ~~~g~~~vvvt~G~~g~~~~~~~~~~~~~---~~~~~--~vdt~GAGDaf~Ag~l~~l~~g-------~~~~~al~~a~~ 271 (293)
T TIGR02152 204 LEKGVKNVIITLGSKGALLVSKDESKLIP---AFKVK--AVDTTAAGDTFNGAFAVALAEG-------KSLEDAIRFANA 271 (293)
T ss_pred HHcCCCeEEEEeCCCceEEEeCCceeEcc---CCCCc--eeCCCCcHHHHHHHHHHHHHCC-------CCHHHHHHHHHH
Confidence 77899999999999999999887544433 24454 7999999999999999999999 999999999999
Q ss_pred HHHHHhcccccCCCCCCHHHHH
Q 008168 529 CGVRDQWSQARTLGYPPKEGME 550 (575)
Q Consensus 529 aAA~~v~~~G~~~g~pt~eeve 550 (575)
+|+++|++.|+..++|+.++|+
T Consensus 272 ~Aa~~~~~~G~~~~~~~~~~~~ 293 (293)
T TIGR02152 272 AAAISVTRKGAQSSIPYLEEVE 293 (293)
T ss_pred HHHHHHcccCcccCCCChHHcC
Confidence 9999999999998889888764
No 24
>PRK09954 putative kinase; Provisional
Probab=100.00 E-value=1.6e-37 Score=329.93 Aligned_cols=300 Identities=17% Similarity=0.172 Sum_probs=227.3
Q ss_pred CcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHH
Q 008168 205 PLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAML 284 (575)
Q Consensus 205 ~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~ 284 (575)
..|+|||.+++|++.... .++|.+. . .+..+...+||+|+|+|++|++||.+|.|+|.||+|.+|++++
T Consensus 58 ~~v~viG~~~vD~~~~~~--~~~p~~~-------~--~~~~~~~~~GG~~~NvA~~larLG~~v~~ig~VG~D~~G~~i~ 126 (362)
T PRK09954 58 EYCVVVGAINMDIRGMAD--IRYPQAA-------S--HPGTIHCSAGGVGRNIAHNLALLGRDVHLLSAIGDDFYGETLL 126 (362)
T ss_pred ccEEEEEEEEEEEEEeeC--CcCcCCC-------C--CCceEEEecCcHHHHHHHHHHHcCCCeEEEEEECCCHHHHHHH
Confidence 479999999999997652 1344311 1 3467788999999999999999999999999999999999999
Q ss_pred HHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccc--hhhhccCcEEEEecccccccchHHH
Q 008168 285 YYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN--IDVLKEAKMFYFSTHSMLERNMKST 362 (575)
Q Consensus 285 ~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~--~~~l~~ad~v~~sg~~l~~~~~~e~ 362 (575)
+.|++.||++.++...++.+|+.++++++.++++.+.+..+.+...++++.+. ...+..++++++++. .+.+.
T Consensus 127 ~~l~~~GVd~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~ 201 (362)
T PRK09954 127 EETRRAGVNVSGCIRLHGQSTSTYLAIANRQDETVLAINDTHILQQLTPQLLNGSRDLIRHAGVVLADCN-----LTAEA 201 (362)
T ss_pred HHHHHcCCCccceEEcCCCCCeEEEEEEcCCCCEEEEEcCchhhhcCCHHHHHHHHHHHhcCCEEEEECC-----CCHHH
Confidence 99999999999998888888999888887665544433223344566665554 244678999988752 12345
Q ss_pred HHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcH
Q 008168 363 TLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEP 442 (575)
Q Consensus 363 ~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~ 442 (575)
+..+++.+ +++++++|+.... + ...+..+++++|++++|+.|++.|+|.......+ ..
T Consensus 202 ~~~~~~~a--~~~~v~~D~~~~~--~------~~~~~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~------------~~ 259 (362)
T PRK09954 202 LEWVFTLA--DEIPVFVDTVSEF--K------AGKIKHWLAHIHTLKPTQPELEILWGQAITSDAD------------RN 259 (362)
T ss_pred HHHHHHhC--CCCcEEEECCCHH--H------hhhhhhhhccccEEecCHHHHHHHcCCCCCCHHH------------HH
Confidence 55555554 4789999976311 0 1235678999999999999999999864332111 12
Q ss_pred HHHHHHhhcCCCEEEEEcCCCcEEEEEcCCc-eeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHH
Q 008168 443 EVIAPLWHENLKVLFVTNGTSKVHYYTKEDD-GAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVR 521 (575)
Q Consensus 443 e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~-~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~e 521 (575)
+++..+++.|++.||||+|++|++++..++. .++++ ++++ +||||||||+|+|||+++|++| +++++
T Consensus 260 ~~~~~l~~~g~~~Vvvt~G~~G~~~~~~~~~~~~~~~---~~v~--vvDttGAGDaF~Ag~l~~l~~g-------~~~~e 327 (362)
T PRK09954 260 AAVNALHQQGVQQIFVYLPDESVFCSEKDGEQFLLTA---PAHT--TVDSFGADDGFMAGLVYSFLEG-------YSFRD 327 (362)
T ss_pred HHHHHHHHcCCCEEEEEeCCccEEEEeCCCceEeccC---CCcc--cccccchHHHHHHHHHHHHHcC-------CCHHH
Confidence 5566777889999999999999998876543 23333 4454 8999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCHHHHHHhhC
Q 008168 522 TIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVE 554 (575)
Q Consensus 522 Al~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~ 554 (575)
|+++|+++|++++.+..+...-.+.+.++++++
T Consensus 328 al~~a~a~Aal~~~s~~~~~~~~~~~~~~~~~~ 360 (362)
T PRK09954 328 SARFAMACAAISRASGSLNNPTLSADNALSLVP 360 (362)
T ss_pred HHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHhc
Confidence 999999999999775555444467788877763
No 25
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=100.00 E-value=3.2e-37 Score=312.46 Aligned_cols=262 Identities=17% Similarity=0.214 Sum_probs=210.6
Q ss_pred cEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008168 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~ 285 (575)
+|+|||++++|+++.. ....+||+++|+|.+|++||.++.++|.||+|.+|+++++
T Consensus 1 ~v~~iG~~~~D~~~~~------------------------~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~ 56 (264)
T cd01940 1 RLAAIGDNVVDKYLHL------------------------GKMYPGGNALNVAVYAKRLGHESAYIGAVGNDDAGAHVRS 56 (264)
T ss_pred CeEEEcceEEEEeccC------------------------ceecCCCcHHHHHHHHHHcCCCeeEEecccCchhHHHHHH
Confidence 5899999999999531 2457899999999999999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHHH
Q 008168 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQ 365 (575)
Q Consensus 286 ~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~ 365 (575)
.|++.||+++++.+.+ .+|+.+++.. .+|++++.+...++.....+.+.....+.+++++|++++.. .+.+.+
T Consensus 57 ~l~~~gI~~~~v~~~~-~~t~~~~~~~-~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~ 129 (264)
T cd01940 57 TLKRLGVDISHCRVKE-GENAVADVEL-VDGDRIFGLSNKGGVAREHPFEADLEYLSQFDLVHTGIYSH-----EGHLEK 129 (264)
T ss_pred HHHHcCCChhheEEcC-CCCceEEEEe-cCCceEEEeecCCcHHhcccCcccHhHHhcCCEEEEccccc-----HHHHHH
Confidence 9999999999998765 4688887554 67888776544454433333333345678999999997532 456788
Q ss_pred HHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcHHHH
Q 008168 366 AIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVI 445 (575)
Q Consensus 366 ~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~ 445 (575)
+++.++++|++|+||++.+ |. .+.+..+++++|++++|.+|+.. . + ..+.+
T Consensus 130 ~~~~a~~~g~~v~~D~~~~---~~-----~~~~~~~~~~~d~~~~~~~~~~~----~--~---------------~~~~~ 180 (264)
T cd01940 130 ALQALVGAGALISFDFSDR---WD-----DDYLQLVCPYVDFAFFSASDLSD----E--E---------------VKAKL 180 (264)
T ss_pred HHHHHHHcCCEEEEcCccc---CC-----HHHHHhhcccCCEEEechhhcCc----c--h---------------HHHHH
Confidence 9999999999999999854 32 23466788999999999876421 0 0 12456
Q ss_pred HHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchh-HHHHHH
Q 008168 446 APLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGY-LVRTIK 524 (575)
Q Consensus 446 ~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~s-l~eAl~ 524 (575)
+.+++.+++.||||+|++|++++.++...++++ ++++ ++|||||||+|+|||+++|++| ++ +++|++
T Consensus 181 ~~l~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~---~~~~--~vDttGAGDaf~ag~i~~l~~g-------~~~~~~al~ 248 (264)
T cd01940 181 KEAVSRGAKLVIVTRGEDGAIAYDGAVFYSVAP---RPVE--VVDTLGAGDSFIAGFLLSLLAG-------GTAIAEAMR 248 (264)
T ss_pred HHHHHcCCCEEEEEECCCCeEEEeCCeEEecCC---cCCC--CCCCCCchHHHHHHHHHHHHhC-------CchHHHHHH
Confidence 777788999999999999999998764434433 3454 8999999999999999999999 88 999999
Q ss_pred HHHHHHHHHhccccc
Q 008168 525 YAIDCGVRDQWSQAR 539 (575)
Q Consensus 525 ~A~aaAA~~v~~~G~ 539 (575)
+|+++|+++|++.|+
T Consensus 249 ~a~~~aa~~~~~~G~ 263 (264)
T cd01940 249 QGAQFAAKTCGHEGA 263 (264)
T ss_pred HHHHHHHHHhcccCC
Confidence 999999999999986
No 26
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=100.00 E-value=3.3e-36 Score=312.92 Aligned_cols=301 Identities=17% Similarity=0.202 Sum_probs=225.2
Q ss_pred CCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008168 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l 283 (575)
.++|+|||++++|++.... .++++++. ..+. . ....+...+|| ++|+|.+|++||.+|.++|.||+|.+|+++
T Consensus 7 ~~~il~iG~~~iD~~~~~~-~~~~~~~~-~~~~---~-~~~~~~~~~GG-a~NvA~~l~~lg~~v~~i~~vG~D~~g~~i 79 (315)
T TIGR02198 7 GAKVLVVGDVMLDRYWYGK-VSRISPEA-PVPV---V-KVEREEDRLGG-AANVARNIASLGARVFLVGVVGDDEAGKRL 79 (315)
T ss_pred CCcEEEECceeEeeeeeec-ccccCCCC-CCce---E-EEEEEEecCcH-HHHHHHHHHhcCCceEEEEEEecchhHHHH
Confidence 4689999999999997531 12332110 0000 0 12455678899 799999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCcc----ccc--hhhhccCcEEEEeccccccc
Q 008168 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKS----EIN--IDVLKEAKMFYFSTHSMLER 357 (575)
Q Consensus 284 ~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~----~i~--~~~l~~ad~v~~sg~~l~~~ 357 (575)
++.|++.||++.++.+.++.+|+.++++++.++ .+..........++.. .+. ...++++++||++++.. ..
T Consensus 80 ~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~-~~ 156 (315)
T TIGR02198 80 EALLAEEGIDTSGLIRDKDRPTTTKTRVLARNQ--QLLRVDFEERDPINAELEARLLAAIREQLASADAVVLSDYAK-GV 156 (315)
T ss_pred HHHHHHCCCCcceEEECCCCCcceEEEEEcCCe--EEEEecCCCCCCCCHHHHHHHHHHHHhhhhhCCEEEEecCCC-Cc
Confidence 999999999999998888888999988887632 2222222221223321 111 24578999999987642 22
Q ss_pred chHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccc
Q 008168 358 NMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKF 437 (575)
Q Consensus 358 ~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~ 437 (575)
.+.+.+..+++.++++|++|+|||+.. .| ..++++|++++|.+|++.|++... +..+
T Consensus 157 ~~~~~~~~~~~~a~~~g~~v~~D~~~~--~~-----------~~~~~~d~l~~n~~E~~~l~~~~~-~~~~--------- 213 (315)
T TIGR02198 157 LTPRVVQEVIAAARKHGKPVLVDPKGK--DF-----------SRYRGATLITPNRKEAEAAVGACD-TEAE--------- 213 (315)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEeCCCc--ch-----------hhcCCCcEECCCHHHHHHHhCCCC-CHHH---------
Confidence 346778889999999999999998743 11 246789999999999999998321 1111
Q ss_pred cCCcHHHHHHHh-hcCCCEEEEEcCCCcEEEEEcC-CceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCC
Q 008168 438 VHYEPEVIAPLW-HENLKVLFVTNGTSKVHYYTKE-DDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITD 515 (575)
Q Consensus 438 ~~~~~e~~~~l~-~~g~k~VVVT~G~~Ga~v~~~~-~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d 515 (575)
..+.+..++ +.|++.||||+|.+|+++++++ ...++++ ++++ ++|||||||+|+|||+++|++|
T Consensus 214 ---~~~~~~~l~~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~---~~~~--vvdt~GAGDaf~ag~~~~l~~g------ 279 (315)
T TIGR02198 214 ---LVQAAEKLLEELDLEALLVTRSEKGMTLFTREGEPIHIPA---QARE--VYDVTGAGDTVIATLALALAAG------ 279 (315)
T ss_pred ---HHHHHHHHHHHcCCCEEEEEcCCCCeEEEecCCCeEEecC---CCCC--CCCCcCccHHHHHHHHHHHHcC------
Confidence 124555555 3689999999999999999853 3344443 3444 8999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhC
Q 008168 516 KGYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVE 554 (575)
Q Consensus 516 ~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~ 554 (575)
+++.+|+++|+++|+++|++.|+.. +++++++..|+
T Consensus 280 -~~~~~al~~A~~~aa~~~~~~G~~~--~~~~~~~~~~~ 315 (315)
T TIGR02198 280 -ASLEEACRLANAAAGVVVGKLGTAT--VSPAELANALQ 315 (315)
T ss_pred -CCHHHHHHHHHHHhhhhhccCCCCC--CCHHHHHHHhC
Confidence 9999999999999999999999863 79999988763
No 27
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=100.00 E-value=4.1e-36 Score=310.29 Aligned_cols=292 Identities=18% Similarity=0.153 Sum_probs=226.8
Q ss_pred EECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHHHH
Q 008168 209 CFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMN 288 (575)
Q Consensus 209 viG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~~L~ 288 (575)
|.=++++|++... +++|. +..........++||+++|+|++|++||.+|.++|.||+| +|+.+++.|+
T Consensus 4 ~~~~~~~D~~~~~---~~~~~--------g~~~~~~~~~~~~GG~~~NvA~~la~lG~~v~~is~vG~D-~g~~~~~~L~ 71 (304)
T TIGR03828 4 VTLNPAIDLTIEL---DGLTL--------GEVNRVESTRIDAGGKGINVSRVLKNLGVDVVALGFLGGF-TGDFIEALLR 71 (304)
T ss_pred EEcchHHeEEEEc---ccccc--------CceeecccccccCCccHHHHHHHHHHcCCCeEEEEEecCc-hhHHHHHHHH
Confidence 4457889999876 34552 1122346778999999999999999999999999999999 6999999999
Q ss_pred hCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccch------hhhccCcEEEEecccccccchHHH
Q 008168 289 VNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI------DVLKEAKMFYFSTHSMLERNMKST 362 (575)
Q Consensus 289 ~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~------~~l~~ad~v~~sg~~l~~~~~~e~ 362 (575)
+.||+++++...+ .|+.++++++.+|+++++ ...++ .++..+++. +.+.+++++|++++... ..+.+.
T Consensus 72 ~~gId~~~~~~~~--~t~~~~~~~~~~g~~~~~-~~~~~--~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~-~~~~~~ 145 (304)
T TIGR03828 72 EEGIKTDFVRVPG--ETRINVKIKEPSGTETKL-NGPGP--EISEEELEALLEKLRAQLAEGDWLVLSGSLPP-GVPPDF 145 (304)
T ss_pred HCCCcceEEECCC--CCeeeEEEEeCCCCEEEE-ECCCC--CCCHHHHHHHHHHHHHhccCCCEEEEECCCCC-CCCHHH
Confidence 9999999987653 467777788777876553 44443 244443331 25778999999986321 124567
Q ss_pred HHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcH
Q 008168 363 TLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEP 442 (575)
Q Consensus 363 ~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~ 442 (575)
+..+++.+++.|.+|+||++.. .+ ...+...+||+++|+.|++.|++.......+ ..
T Consensus 146 ~~~~~~~~~~~~~~v~~D~~~~-~~----------~~~~~~~~~i~~~n~~E~~~l~g~~~~~~~~------------~~ 202 (304)
T TIGR03828 146 YAELIALAREKGAKVILDTSGE-AL----------RDGLKAKPFLIKPNDEELEELFGRELKTLEE------------II 202 (304)
T ss_pred HHHHHHHHHHcCCEEEEECChH-HH----------HHHHhcCCcEECcCHHHHHHHhCCCCCCHHH------------HH
Confidence 8889999999999999998732 11 1223346899999999999999865332111 12
Q ss_pred HHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHH
Q 008168 443 EVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRT 522 (575)
Q Consensus 443 e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eA 522 (575)
+.++.+++.|++.||||+|.+|++++++++..++++ ++++ ++|||||||+|+|||+++|++| +++++|
T Consensus 203 ~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~---~~~~--vvDttGAGDaF~a~~l~~l~~g-------~~~~~a 270 (304)
T TIGR03828 203 EAARELLDLGAENVLISLGADGALLVTKEGALFAQP---PKGE--VVSTVGAGDSMVAGFLAGLESG-------LSLEEA 270 (304)
T ss_pred HHHHHHHHcCCCEEEEccCCCCcEEEcCCceEEEeC---CCcc--ccCCcChHHHHHHHHHHHHHcC-------CCHHHH
Confidence 556677788999999999999999998876555544 3454 7999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 523 IKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 523 l~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
+++|+++|+++|++.|+ .+|++++++.+|.+
T Consensus 271 ~~~a~~~Aa~~~~~~G~--~~p~~~~~~~~~~~ 301 (304)
T TIGR03828 271 LRLAVAAGSAAAFSEGT--GLPDPEDIEELLPQ 301 (304)
T ss_pred HHHHHHHHHHHhcCcCC--CCCCHHHHHHHHhc
Confidence 99999999999999997 48999999999854
No 28
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=100.00 E-value=2.5e-36 Score=311.96 Aligned_cols=290 Identities=18% Similarity=0.172 Sum_probs=216.6
Q ss_pred cEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008168 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~ 285 (575)
+|+|||++++|++..... +++|++. . .... ........+|| ++|+|.+|++||.++.++|.||+|.+|+++++
T Consensus 1 ~vl~iG~~~~D~~~~~~~-~~~~~~~-~--~~~~--~~~~~~~~~GG-~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~ 73 (304)
T cd01172 1 KVLVVGDVILDEYLYGDV-ERISPEA-P--VPVV--KVEREEIRLGG-AANVANNLASLGAKVTLLGVVGDDEAGDLLRK 73 (304)
T ss_pred CEEEEcceeEEeeEeecc-ccccCCC-C--cceE--EeeeEEecCcH-HHHHHHHHHHhCCCeEEEEEEcCCccHHHHHH
Confidence 589999999999975421 2443211 0 0011 12346678999 68999999999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCcccc------chhhhccCcEEEEecccccccch
Q 008168 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEI------NIDVLKEAKMFYFSTHSMLERNM 359 (575)
Q Consensus 286 ~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i------~~~~l~~ad~v~~sg~~l~~~~~ 359 (575)
.|++.||++.++ ..++.+|+.+++++++ +++.+.+. ......++.... ....++++++||++++.. ....
T Consensus 74 ~l~~~gI~~~~~-~~~~~~t~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~s~~~~-~~~~ 149 (304)
T cd01172 74 LLEKEGIDTDGI-VDEGRPTTTKTRVIAR-NQQLLRVD-REDDSPLSAEEEQRLIERIAERLPEADVVILSDYGK-GVLT 149 (304)
T ss_pred HHHhCCCCcceE-ecCCCCceEEEEEecC-CcEEEEEe-cCCCCCCCHHHHHHHHHHHHHhhccCCEEEEEcCCC-CccC
Confidence 999999999985 4566778888887765 45544332 222223332211 134578999999987532 2234
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccC
Q 008168 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVH 439 (575)
Q Consensus 360 ~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~ 439 (575)
.+.+..+++.+++.|++|+||++.+. | .+++++|++++|.+|++.+++.......+
T Consensus 150 ~~~~~~~~~~a~~~~~~v~~D~~~~~--~-----------~~~~~~d~l~~n~~E~~~l~~~~~~~~~~----------- 205 (304)
T cd01172 150 PRVIEALIAAARELGIPVLVDPKGRD--Y-----------SKYRGATLLTPNEKEAREALGDEINDDDE----------- 205 (304)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCCcc--h-----------hhccCCcEeCCCHHHHHHHhCCCCCChHH-----------
Confidence 56788899999999999999987432 1 45779999999999999999864322111
Q ss_pred CcHHHHHHHh-hcCCCEEEEEcCCCcEEEEE-cCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCch
Q 008168 440 YEPEVIAPLW-HENLKVLFVTNGTSKVHYYT-KEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKG 517 (575)
Q Consensus 440 ~~~e~~~~l~-~~g~k~VVVT~G~~Ga~v~~-~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~ 517 (575)
..+.++.++ ..|++.||||+|.+|+++++ ++...++++ ++++ +||||||||+|+|||+++|++| +
T Consensus 206 -~~~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~---~~~~--vvdttGAGDaf~ag~i~~l~~g-------~ 272 (304)
T cd01172 206 -LEAAGEKLLELLNLEALLVTLGEEGMTLFERDGEVQHIPA---LAKE--VYDVTGAGDTVIATLALALAAG-------A 272 (304)
T ss_pred -HHHHHHHHHHHhCCCeEEEEcCCCccEEEcCCCcEEEecC---CCCC--CCCCcCccHHHHHHHHHHHHcC-------C
Confidence 124455555 35899999999999999998 544445554 3444 8999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHHHHhcccccCCCC
Q 008168 518 YLVRTIKYAIDCGVRDQWSQARTLGY 543 (575)
Q Consensus 518 sl~eAl~~A~aaAA~~v~~~G~~~g~ 543 (575)
++++|+++|+++|+++|++.|+...+
T Consensus 273 ~~~~al~~a~a~Aa~~~~~~g~~~~~ 298 (304)
T cd01172 273 DLEEAAFLANAAAGVVVGKVGTAPVT 298 (304)
T ss_pred CHHHHHHHHHHHhheeeecCCCCCcC
Confidence 99999999999999999999997554
No 29
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=100.00 E-value=2.3e-36 Score=310.87 Aligned_cols=278 Identities=15% Similarity=0.112 Sum_probs=211.5
Q ss_pred cEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008168 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~ 285 (575)
.|+|+|++++|++..+ +++|.+ +...........+||+++|+|++|++||.++.++|.||+|.+|+++++
T Consensus 1 ~v~~iG~~~vD~~~~v---~~~p~~-------~~~~~~~~~~~~~GG~a~NvA~~la~lG~~~~~~~~vG~D~~g~~~~~ 70 (290)
T cd01939 1 AVLCVGLTVLDFITTV---DKYPFE-------DSDQRTTNGRWQRGGNASNSCTVLRLLGLSCEFLGVLSRGPVFESLLD 70 (290)
T ss_pred CEEEEeeeeeEEEeee---cCCCCC-------CcceEeeeeeEecCCCHHHHHHHHHHcCCceEEEEeecCCHHHHHHHH
Confidence 4899999999999876 344421 111112445678999999999999999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHHH
Q 008168 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQ 365 (575)
Q Consensus 286 ~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~ 365 (575)
.|++.||++.++.+.++..++.++++++.+|++++. ...++...++.++++...++.++++|++++.. +...+
T Consensus 71 ~l~~~gId~~~~~~~~~~~~~~~~~~~~~~g~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~ 143 (290)
T cd01939 71 DFQSRGIDISHCYRKDIDEPASSYIIRSRAGGRTTI-VNDNNLPEVTYDDFSKIDLTQYGWIHFEGRNP------DETLR 143 (290)
T ss_pred HHHHcCCceeeeeEcCCCCCeeEEEEEcCCCCeEEE-EeCCCCCCCCHHHHhhhhhccCCEEEEeccCH------HHHHH
Confidence 999999999998666555566667777777887665 33455567777776655568999999997531 34556
Q ss_pred HHHHHhhcC-------CEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCccccccccccccc
Q 008168 366 AIKISKQFG-------GIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFV 438 (575)
Q Consensus 366 ~l~~ak~~G-------~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~ 438 (575)
+++.+++.+ +++++|++... +.+..+++++|++++|++|+..+ +....
T Consensus 144 ~~~~~~~~~~~~~~~~~~v~~d~~~~~----------~~~~~~l~~~di~~~n~~~~~~~-~~~~~-------------- 198 (290)
T cd01939 144 MMQHIEEHNNRRPEIRITISVEVEKPR----------EELLELAAYCDVVFVSKDWAQSR-GYKSP-------------- 198 (290)
T ss_pred HHHHHHHhcCcCCCcceEEEEEeccCc----------hhhhhHHhhCCEEEEEhHHHHhc-CcCCH--------------
Confidence 777777766 68889976432 22457889999999999988764 53211
Q ss_pred CCcHHHHHH--HhhcCCCEEEEEcCCCcEEEEEcCCc-eeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCC
Q 008168 439 HYEPEVIAP--LWHENLKVLFVTNGTSKVHYYTKEDD-GAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITD 515 (575)
Q Consensus 439 ~~~~e~~~~--l~~~g~k~VVVT~G~~Ga~v~~~~~~-~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d 515 (575)
.+.+.. +...+++.||||+|++|++++.+++. .+++++ ++. .+||||||||+|+|||+++|++|
T Consensus 199 ---~~~~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~---~~~-~vvDt~GAGDsf~agfl~~l~~g------ 265 (290)
T cd01939 199 ---EECLRGEGPRAKKAALLVCTWGDQGAGALGPDGEYVHSPAH---KPI-RVVDTLGAGDTFNAAVIYALNKG------ 265 (290)
T ss_pred ---HHHHHhhhhhccCCcEEEEEcccCCeEEEcCCCCEEEecCC---CCC-CcccCCCchHHHHHHHHHHHHcC------
Confidence 122222 22357899999999999999886443 344443 221 27999999999999999999999
Q ss_pred chh-HHHHHHHHHHHHHHHhccccc
Q 008168 516 KGY-LVRTIKYAIDCGVRDQWSQAR 539 (575)
Q Consensus 516 ~~s-l~eAl~~A~aaAA~~v~~~G~ 539 (575)
++ +.+|+++|+++|++++++.|.
T Consensus 266 -~~~~~~a~~~a~a~aa~~i~~~G~ 289 (290)
T cd01939 266 -PDDLSEALDFGNRVASQKCTGVGF 289 (290)
T ss_pred -CccHHHHHHHHHHHHHHHHhhhcC
Confidence 85 999999999999999999885
No 30
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=4.3e-36 Score=304.57 Aligned_cols=264 Identities=18% Similarity=0.217 Sum_probs=210.3
Q ss_pred cEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008168 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~ 285 (575)
+|+|+|++++|++..+. .+|.+ +.......+...+||+++|+|++|++||.++.++|.||+|.+|+.+++
T Consensus 1 ~il~iG~~~iD~~~~~~---~~~~~-------~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~i~~vG~D~~g~~i~~ 70 (265)
T cd01947 1 KIAVVGHVEWDIFLSLD---APPQP-------GGISHSSDSRESPGGGGANVAVQLAKLGNDVRFFSNLGRDEIGIQSLE 70 (265)
T ss_pred CEEEEeeeeEEEEEEec---CCCCC-------CceeecccceeecCchHHHHHHHHHHcCCceEEEEEecCChHHHHHHH
Confidence 58999999999998752 33321 122245678899999999999999999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHHH
Q 008168 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQ 365 (575)
Q Consensus 286 ~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~ 365 (575)
.|++ ++++.++... +..|+.++++++.+|++++.+ ..+.. .+++....+..++++|+++.. ...+
T Consensus 71 ~l~~-~~~~~~~~~~-~~~t~~~~~~~~~~g~r~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~--------~~~~ 135 (265)
T cd01947 71 ELES-GGDKHTVAWR-DKPTRKTLSFIDPNGERTITV-PGERL----EDDLKWPILDEGDGVFITAAA--------VDKE 135 (265)
T ss_pred HHHh-cCCcceEEec-CCCCceEEEEECCCCcceEEe-cCCCC----cccCCHhHhccCCEEEEeccc--------ccHH
Confidence 9999 9998887654 468999999998889887753 32221 244445677899999999753 1245
Q ss_pred HHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcHHHH
Q 008168 366 AIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVI 445 (575)
Q Consensus 366 ~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~ 445 (575)
+++.+++.+ .+++|++.+... ..+.++++++|++++|++|+..+++ +
T Consensus 136 ~~~~a~~~~-~~~~d~~~~~~~--------~~~~~~~~~~d~~~~n~~e~~~l~~------------------------~ 182 (265)
T cd01947 136 AIRKCRETK-LVILQVTPRVRV--------DELNQALIPLDILIGSRLDPGELVV------------------------A 182 (265)
T ss_pred HHHHHHHhC-CeEeccCccccc--------hhHHHHhhhCCEEEeCHHHHHHhhh------------------------H
Confidence 667777665 578898754432 2457788999999999999988753 2
Q ss_pred HHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHH
Q 008168 446 APLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKY 525 (575)
Q Consensus 446 ~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~ 525 (575)
+.+.+.+++.||||+|++|+++++++...++++ ++++ ++|||||||+|+|||+++|++| +++++|+++
T Consensus 183 ~~~~~~~~~~viit~G~~Ga~~~~~~~~~~~~~---~~~~--vvDttGAGDaF~ag~l~~l~~g-------~~~~~al~~ 250 (265)
T cd01947 183 EKIAGPFPRYLIVTEGELGAILYPGGRYNHVPA---KKAK--VPDSTGAGDSFAAGFIYGLLKG-------WSIEEALEL 250 (265)
T ss_pred HHHHhccCCEEEEEeCCCCeEEEECCeeEECCC---CCCC--CCCCCCchHHHHHHHHHHHHcC-------CCHHHHHHH
Confidence 345567899999999999999999765334433 3454 8999999999999999999999 999999999
Q ss_pred HHHHHHHHhccccc
Q 008168 526 AIDCGVRDQWSQAR 539 (575)
Q Consensus 526 A~aaAA~~v~~~G~ 539 (575)
|+++|+++|++.|+
T Consensus 251 a~~~Aa~~v~~~G~ 264 (265)
T cd01947 251 GAQCGAICVSHFGP 264 (265)
T ss_pred HHHHHHHHHhccCC
Confidence 99999999999986
No 31
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=100.00 E-value=1.6e-36 Score=318.15 Aligned_cols=285 Identities=12% Similarity=0.033 Sum_probs=220.2
Q ss_pred cEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHc-CC--Ce--EEEEEeCCChHH
Q 008168 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARL-GG--KV--AFMGKLGDDEYG 280 (575)
Q Consensus 206 ~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarL-G~--~v--~lig~VG~D~~G 280 (575)
+|+++|++++|+++... ...+...+||+++|+|+++++| |. ++ .+++.+|+| +|
T Consensus 1 ~~~~~G~~~~d~i~~~~--------------------~~~~~~~~GG~~~N~A~~~~~l~g~~~~~~~~~~~~vG~D-~G 59 (328)
T cd01943 1 DFTTLGMFIIDEIEYPD--------------------SEPVTNVLGGAGTYAILGARLFLPPPLSRSISWIVDKGSD-FP 59 (328)
T ss_pred CccccCcEEeeccccCC--------------------CCccccccCCchhhHhhceeeecCCccccceeeEEecCCC-CC
Confidence 47999999999997541 1355678999999999999999 44 66 889999999 99
Q ss_pred HHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchH
Q 008168 281 QAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMK 360 (575)
Q Consensus 281 ~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~ 360 (575)
+++++.|++.||++++ ...++.+|+.++++++++|++.+. ...++...+++++++...+..++++|+++... ...
T Consensus 60 ~~l~~~L~~~GVd~~~-~~~~~~~Tg~~~v~~~~~g~r~~~-~~~~~~~~~~~~~l~~~~~~~a~~~hl~~~~~---~~~ 134 (328)
T cd01943 60 KSVEDELESWGTGMVF-RRDPGRLTTRGLNIYDGNDRRFFK-YLTPKKRIDVSDDLNSTPLIRSSCIHLICSPE---RCA 134 (328)
T ss_pred HHHHHHHHhcCCceEE-EeCCCCcchhhhhhcCCCCcceee-ecCcccccccccccccccccCCCeEEEECCHH---HHH
Confidence 9999999999999998 677778899999888887777654 55566677888888766688899999987532 133
Q ss_pred HHHHHHHHHHhh------cCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCccccccccc
Q 008168 361 STTLQAIKISKQ------FGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNAR 434 (575)
Q Consensus 361 e~~~~~l~~ak~------~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~ 434 (575)
+.+.++++.+++ .|..+++|++... +. ....+.+..+++++|+|++|++|+..|+|..........
T Consensus 135 ~~~~~~~~~a~~~~~d~~~g~~~~~d~~~~~--~~--~~~~~~l~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~---- 206 (328)
T cd01943 135 SIVDDIINLFKLLKGNSPTRPKIVWEPLPDS--CD--PENLEDLLQALPRVDVFSPNLEEAARLLGLPTSEPSSDE---- 206 (328)
T ss_pred HHHHHHHHHHHhhccccCCccEEEEecCCcc--cC--hhhHHHHHHHhccCCEECCCHHHHHHHhCCCCCCccchh----
Confidence 677888899988 7888999976211 11 012345788999999999999999999986532211000
Q ss_pred ccccCCcHH------HHHHHhhcCCCEEEEEcCCCcEEEEEc--CCceeEecccCCCCCCcccCccChhHHHHHHHHHHH
Q 008168 435 SKFVHYEPE------VIAPLWHENLKVLFVTNGTSKVHYYTK--EDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRML 506 (575)
Q Consensus 435 ~~~~~~~~e------~~~~l~~~g~k~VVVT~G~~Ga~v~~~--~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L 506 (575)
... ....+...+++.||||+|.+|+++++. +...++|+++..+.+ ++|||||||+|+|||+++|
T Consensus 207 ------~~~~~~~~~~~~~~~~~g~~~vvvt~G~~Ga~~~~~~~~~~~~~p~~~v~~~~--vvDttGAGDaF~agfl~~l 278 (328)
T cd01943 207 ------EKEAVLQALLFSGILQDPGGGVVLRCGKLGCYVGSADSGPELWLPAYHTKSTK--VVDPTGGGNSFLGGFAAGL 278 (328)
T ss_pred ------hhhhhHHHHHHHhhhccCCCEEEEEeCCCCCEEEecCCCceEecCCccCCCCc--ccCCCCchHHHHHHHHHHH
Confidence 001 111224568899999999999999985 333445543221224 8999999999999999999
Q ss_pred HcCCCCCCCchhHHHHHHHHHHHHHHHhccccc
Q 008168 507 TVQPHLITDKGYLVRTIKYAIDCGVRDQWSQAR 539 (575)
Q Consensus 507 ~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~ 539 (575)
++| +++++|+++|+++|++++++.|.
T Consensus 279 ~~g-------~~~~~al~~a~a~Aa~~v~~~G~ 304 (328)
T cd01943 279 ALT-------KSIDEACIYGSVAASFAIEQVGL 304 (328)
T ss_pred HcC-------CCHHHHHHHHHHHHHHHHccCCC
Confidence 999 99999999999999999999995
No 32
>PLN02548 adenosine kinase
Probab=100.00 E-value=1.6e-35 Score=310.57 Aligned_cols=273 Identities=14% Similarity=0.164 Sum_probs=209.3
Q ss_pred cccCCCceEEecCChHHHHHHHH---HHcCCCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCC
Q 008168 239 ALWAPEKFIRSPGGCTGSAAIAL---ARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKR 315 (575)
Q Consensus 239 ~~~~~~~~~~~~GG~a~NvA~aL---arLG~~v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~ 315 (575)
.......+...+||++.|+|.++ ++||.++.|+|.||+|.+|+++++.|++.||+++++. ..+.+|+++++.++ +
T Consensus 40 ~~~~~~~~~~~~GG~~~Nva~~a~~l~~lg~~~~~ig~vG~D~~g~~i~~~L~~~gVd~~~~~-~~~~~T~~~~i~~~-~ 117 (332)
T PLN02548 40 ELASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYMGCIGKDKFGEEMKKCATAAGVNVHYYE-DESTPTGTCAVLVV-G 117 (332)
T ss_pred HHhccCCceecCCcHHHHHHHHHHHHhcCCCcEEEEEEEcCChhHHHHHHHHHHcCCceeeec-cCCCCCceEEEEEe-c
Confidence 33345678899999999986544 5679999999999999999999999999999999875 46678999988885 6
Q ss_pred CCeEEEEecCCccccCCccccc----hhhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCc
Q 008168 316 GRLRMTCVKPCAEDALTKSEIN----IDVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSG 391 (575)
Q Consensus 316 Ger~~~~~~~ga~~~lt~~~i~----~~~l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~ 391 (575)
|+|.+. .+.++...++.+++. ...+..++++|++|+.+. ...+.+..+++.++++|.++.+|++ .++|.
T Consensus 118 g~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~--~~~~~~~~~~~~a~~~g~~~~~~~~--~~~~~-- 190 (332)
T PLN02548 118 GERSLV-ANLSAANCYKVEHLKKPENWALVEKAKFYYIAGFFLT--VSPESIMLVAEHAAANNKTFMMNLS--APFIC-- 190 (332)
T ss_pred CCceee-eccchhhcCCHHHhcChhhHhHHhhCCEEEEEEEEcc--CCHHHHHHHHHHHHHcCCEEEEECC--ChhHH--
Confidence 888764 445555555554442 345788999999986432 2346778888889999988777764 34553
Q ss_pred hhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcHHHHHHHhh------cCCCEEEEEcCCCcE
Q 008168 392 EETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWH------ENLKVLFVTNGTSKV 465 (575)
Q Consensus 392 ~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~------~g~k~VVVT~G~~Ga 465 (575)
+...+.+.++++++|++++|++|+..|++.......+ ..+.+..+.. .+++.||||+|++|+
T Consensus 191 ~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~~vvvT~G~~G~ 258 (332)
T PLN02548 191 EFFKDQLMEALPYVDFLFGNETEARTFAKVQGWETED------------VEEIALKISALPKASGTHKRTVVITQGADPT 258 (332)
T ss_pred HHhHHHHHHHHhhCCEEEecHHHHHHHhCccCCCccc------------HHHHHHHHHHhhhhccccCCEEEEEeCCCcE
Confidence 2234567889999999999999999998854321111 1123333322 257899999999999
Q ss_pred EEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcccccCC
Q 008168 466 HYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTL 541 (575)
Q Consensus 466 ~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~ 541 (575)
+++.++...++++++.++++ +||||||||+|+|||+++|++| +++++|+++|++||+++|++.|+..
T Consensus 259 ~~~~~~~~~~~pa~~~~~~~--vvDttGAGDaF~ag~l~~l~~g-------~~l~eal~~a~aaAa~~v~~~G~~~ 325 (332)
T PLN02548 259 VVAEDGKVKEFPVIPLPKEK--LVDTNGAGDAFVGGFLSQLVQG-------KDIEECVRAGNYAANVIIQRSGCTY 325 (332)
T ss_pred EEEECCeEEEeccccCCcCc--cccCCCchHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHhccCCCC
Confidence 99987765566654333333 8999999999999999999999 9999999999999999999999963
No 33
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=100.00 E-value=8.6e-36 Score=302.07 Aligned_cols=259 Identities=15% Similarity=0.105 Sum_probs=204.9
Q ss_pred CcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHH
Q 008168 205 PLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAML 284 (575)
Q Consensus 205 ~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~ 284 (575)
|+|++||++++|+++... ..++||++.|+|++|++||.++.++|.||+|.+|++++
T Consensus 1 ~~v~~iG~~~~D~~~~~~------------------------~~~~GG~~~NvA~~l~~lG~~~~~is~vG~D~~g~~i~ 56 (260)
T PRK09813 1 KKLATIGDNCVDIYPQLG------------------------KAFSGGNAVNVAVYCTRYGIQPGCITWVGDDDYGTKLK 56 (260)
T ss_pred CeEEEeccceeeecccCC------------------------ccccCccHHHHHHHHHHcCCcceEEEEecCcHHHHHHH
Confidence 579999999999996431 14789999999999999999999999999999999999
Q ss_pred HHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHH
Q 008168 285 YYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTL 364 (575)
Q Consensus 285 ~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~ 364 (575)
+.|++.||+++++.+.++ +|+.+++.++ +|+|++.....++...+..++.+.+.+..++++|++.+. ...
T Consensus 57 ~~l~~~gI~~~~~~~~~~-~t~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~--------~~~ 126 (260)
T PRK09813 57 QDLARMGVDISHVHTKHG-VTAQTQVELH-DNDRVFGDYTEGVMADFALSEEDYAWLAQYDIVHAAIWG--------HAE 126 (260)
T ss_pred HHHHHcCCcchheeeecC-CCceEEEEEe-CCcEEeeccCCCcccccccCHHHHHHHHhCCEEEEeccc--------hHH
Confidence 999999999999987664 6888777775 577766433344444444444444567899999997421 124
Q ss_pred HHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcHHH
Q 008168 365 QAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEV 444 (575)
Q Consensus 365 ~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~ 444 (575)
++++.++++|++|+||++.+.. ...+..+++++|++++|..+... + ..+.
T Consensus 127 ~~~~~~~~~~~~v~~D~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~~----------~------------~~~~ 176 (260)
T PRK09813 127 DAFPQLHAAGKLTAFDFSDKWD--------SPLWQTLVPHLDYAFASAPQEDE----------F------------LRLK 176 (260)
T ss_pred HHHHHHHHcCCeEEEEcCCCcc--------HHHHHHhCCceeEEEecCCcchH----------H------------HHHH
Confidence 5677788899999999975421 23456789999999988643110 0 1255
Q ss_pred HHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHH
Q 008168 445 IAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIK 524 (575)
Q Consensus 445 ~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~ 524 (575)
+..+.+.|++.||||+|++|++++++++..++|+ .+++ ++|||||||+|+|||+++|++| +++++|++
T Consensus 177 ~~~~~~~g~~~viit~G~~Ga~~~~~~~~~~~~~---~~~~--~vDttGAGDaF~ag~i~~~~~g-------~~~~~al~ 244 (260)
T PRK09813 177 MKAIVARGAGVVIVTLGENGSIAWDGAQFWRQAP---EPVT--VVDTMGAGDSFIAGFLCGWLAG-------MTLPQAMA 244 (260)
T ss_pred HHHHHHcCCCEEEEEECCCceEEEECCEEEecCC---cccC--CCCCCCchHHHHHHHHHHHHcC-------CCHHHHHH
Confidence 6667778999999999999999998765444444 3454 7999999999999999999999 99999999
Q ss_pred HHHHHHHHHhccccc
Q 008168 525 YAIDCGVRDQWSQAR 539 (575)
Q Consensus 525 ~A~aaAA~~v~~~G~ 539 (575)
+|+++|++++++.|+
T Consensus 245 ~a~~~aa~~~~~~G~ 259 (260)
T PRK09813 245 QGTACAAKTIQYHGA 259 (260)
T ss_pred HHHHHHHHHHhccCC
Confidence 999999999999986
No 34
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.3e-35 Score=304.02 Aligned_cols=282 Identities=22% Similarity=0.240 Sum_probs=217.0
Q ss_pred EEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHH
Q 008168 207 VCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYY 286 (575)
Q Consensus 207 VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~~ 286 (575)
|+++|++++|++.... ++|.++ +. .+......+||+++|+|++|++||.++.++|.||+|.+|+.+++.
T Consensus 2 v~~~G~~~~D~~~~~~---~~~~~~------~~--~~~~~~~~~GG~~~Nva~~l~~lG~~~~~~~~lG~D~~g~~i~~~ 70 (288)
T cd01941 2 IVVIGAANIDLRGKVS---GSLVPG------TS--NPGHVKQSPGGVGRNIAENLARLGVSVALLSAVGDDSEGESILEE 70 (288)
T ss_pred eEEEEeEEEeeeeccc---CccccC------CC--CCeeEEEccCcHHHHHHHHHHHhCCCcEEEEEEecCccHHHHHHH
Confidence 8999999999997652 333211 11 124567899999999999999999999999999999999999999
Q ss_pred HHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccc--hhhhccCcEEEEecccccccchHHHHH
Q 008168 287 MNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN--IDVLKEAKMFYFSTHSMLERNMKSTTL 364 (575)
Q Consensus 287 L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~--~~~l~~ad~v~~sg~~l~~~~~~e~~~ 364 (575)
|++.||++.++. ..+.+|+.++++++.+|++.+....++....++.+.++ ...+..+++|++++. .+...+.
T Consensus 71 L~~~gI~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~-----~~~~~~~ 144 (288)
T cd01941 71 SEKAGLNVRGIV-FEGRSTASYTAILDKDGDLVVALADMDIYELLTPDFLRKIREALKEAKPIVVDAN-----LPEEALE 144 (288)
T ss_pred HHHcCCccceee-eCCCCcceEEEEECCCCCEEEEEechHhhhhCCHHHHHHHHHHHhcCCEEEEeCC-----CCHHHHH
Confidence 999999999887 56778999999998889987644444444444433322 345789999998753 2345677
Q ss_pred HHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcHHH
Q 008168 365 QAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEV 444 (575)
Q Consensus 365 ~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~ 444 (575)
.+++.+++.+.++++|++....+| + +..+++++|++++|++|+..+++....+... ....
T Consensus 145 ~~~~~a~~~~~~v~~d~~~~~~~~-------~-~~~~~~~~dii~~n~~E~~~~~~~~~~~~~~------------~~~~ 204 (288)
T cd01941 145 YLLALAAKHGVPVAFEPTSAPKLK-------K-LFYLLHAIDLLTPNRAELEALAGALIENNED------------ENKA 204 (288)
T ss_pred HHHHhhhhcCCcEEEEccchHHhc-------c-chhhcccceEEeCCHHHHHHHhCcccCCchh------------HHHH
Confidence 888889999999999986322211 1 1157899999999999999998865322100 1134
Q ss_pred HHHHhhcCCCEEEEEcCCCcEEEEEc--C-CceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHH
Q 008168 445 IAPLWHENLKVLFVTNGTSKVHYYTK--E-DDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVR 521 (575)
Q Consensus 445 ~~~l~~~g~k~VVVT~G~~Ga~v~~~--~-~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~e 521 (575)
++.+...+++.||||+|.+|++++++ + ...+++++ .+++ +||||||||+|+|||+++|++| +++++
T Consensus 205 ~~~~~~~~~~~vvit~G~~Ga~~~~~~~~~~~~~~~~~--~~~~--~vDttGAGDaf~a~~~~~l~~g-------~~~~~ 273 (288)
T cd01941 205 AKILLLPGIKNVIVTLGAKGVLLSSREGGVETKLFPAP--QPET--VVNVTGAGDAFVAGLVAGLLEG-------MSLDD 273 (288)
T ss_pred HHHHHHcCCcEEEEEeCCCcEEEEecCCCceeEEecCC--CCcc--ceeCCCcHHHHHHHHHHHHHcC-------CCHHH
Confidence 55666779999999999999999987 3 22344431 2333 8999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhcc
Q 008168 522 TIKYAIDCGVRDQWS 536 (575)
Q Consensus 522 Al~~A~aaAA~~v~~ 536 (575)
|+++|+++|+++|+.
T Consensus 274 al~~a~~~Aa~~~~~ 288 (288)
T cd01941 274 SLRFAQAAAALTLES 288 (288)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999863
No 35
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=100.00 E-value=6.5e-35 Score=303.08 Aligned_cols=296 Identities=17% Similarity=0.130 Sum_probs=222.9
Q ss_pred cEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008168 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~ 285 (575)
-+.+..++++|.+... ++++.. .......+...+||++.|+|++|++||.++.++|.||+ .+|+++++
T Consensus 2 ~~~~t~np~~D~~~~~---~~~~~~--------~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vGd-~~G~~i~~ 69 (309)
T PRK13508 2 ILTVTLNPSIDISYPL---DELKLD--------TVNRVVDVSKTAGGKGLNVTRVLSEFGENVLATGLIGG-ELGQFIAE 69 (309)
T ss_pred EEEEecChHHeEEEEe---CCeeeC--------CeEEecceeecCCchHHHHHHHHHHcCCCeEEEEEecC-hhHHHHHH
Confidence 3557789999998776 355432 11123567889999999999999999999999999996 68999999
Q ss_pred HHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccc------hhhhccCcEEEEecccccccch
Q 008168 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN------IDVLKEAKMFYFSTHSMLERNM 359 (575)
Q Consensus 286 ~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~------~~~l~~ad~v~~sg~~l~~~~~ 359 (575)
.|++ ||++.++.. + ..|+.++++++ +|++++. ...++. ++.++.. ...+.++++||++|+.... .+
T Consensus 70 ~l~~-gI~~~~~~~-~-~~t~~~~~~~~-~g~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~-~~ 141 (309)
T PRK13508 70 HLDD-QIKHAFYKI-K-GETRNCIAILH-EGQQTEI-LEKGPE--ISVQEADGFLHHFKQLLESVEVVAISGSLPAG-LP 141 (309)
T ss_pred HHHc-CCCceEEEC-C-CCCeeeEEEEe-CCCEEEE-ECCCCC--CCHHHHHHHHHHHHHhccCCCEEEEeCCCCCC-cC
Confidence 9999 999987654 3 35777777775 6777664 444432 3333221 2357899999999864221 23
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccC
Q 008168 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVH 439 (575)
Q Consensus 360 ~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~ 439 (575)
.+.+..+++.+++.|++++||++... ...+...+.++|++++|.+|+..++|.......+ .
T Consensus 142 ~~~~~~~~~~a~~~g~~v~~D~~~~~---------~~~~~~~~~~~dii~~n~~E~~~l~g~~~~~~~~----~------ 202 (309)
T PRK13508 142 VDYYAQLIELANQAGKPVVLDCSGAA---------LQAVLESPYKPTVIKPNIEELSQLLGKEVSEDLD----E------ 202 (309)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCcHH---------HHHHHhccCCceEEccCHHHHHHHhCCCCCCCHH----H------
Confidence 46678889999999999999986321 1123334578999999999999999864321100 0
Q ss_pred CcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhH
Q 008168 440 YEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYL 519 (575)
Q Consensus 440 ~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl 519 (575)
..+.+..++..|++.||||+|++|++++.++...++++ ++++ +||||||||+|+|||+++|++| +++
T Consensus 203 -~~~~~~~~~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~---~~v~--vvDttGAGDaF~Agfi~~l~~g-------~~~ 269 (309)
T PRK13508 203 -LKEVLQQPLFEGIEWIIVSLGADGAFAKHNDTFYKVDI---PKIE--VVNPVGSGDSTVAGIASGLLHQ-------EDD 269 (309)
T ss_pred -HHHHHHHHHHcCCCEEEEecCCCceEEEeCCceEEEeC---CCcc--ccCCcChhHHHHHHHHHHHHcC-------CCH
Confidence 12444555667999999999999999988765444443 4555 8999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 520 VRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 520 ~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
++|+++|+++||+++++.+. +..++.+++++++.
T Consensus 270 ~~al~~a~a~aa~~~~~~~~--~~~~~~~~~~~~~~ 303 (309)
T PRK13508 270 ADLLKKANVLGMLNAQEKQT--GHVNMANYDELYNQ 303 (309)
T ss_pred HHHHHHHHHHHHHHhcCcCc--CCCCHHHHHHHHhc
Confidence 99999999999999999988 45788888888754
No 36
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=100.00 E-value=2e-34 Score=299.87 Aligned_cols=294 Identities=14% Similarity=0.069 Sum_probs=226.4
Q ss_pred EE-EECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008168 207 VC-CFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 207 Vl-viG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~ 285 (575)
|+ |.=+.++|++... +++|. +.........+++||+++|+|++|++||.++.++|.||+|.+|++ ++
T Consensus 5 ~~~~~~~p~~D~~~~~---~~~~~--------~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~~~~-~~ 72 (312)
T PRK09513 5 VATITLNPAYDLVGFC---PEIER--------GEVNLVKTTGLHAAGKGINVAKVLKDLGIDVTVGGFLGKDNQDGF-QQ 72 (312)
T ss_pred EEEEecChHHeEEEEc---Cceec--------CCeeeecceeecCCchHHHHHHHHHHcCCCeEEEEEecCccHHHH-HH
Confidence 44 4558999999765 34542 122345778899999999999999999999999999999999987 58
Q ss_pred HHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccc------hhhhccCcEEEEecccccccch
Q 008168 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN------IDVLKEAKMFYFSTHSMLERNM 359 (575)
Q Consensus 286 ~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~------~~~l~~ad~v~~sg~~l~~~~~ 359 (575)
.|++.||++.++. .++ .|+.++++++.+|+++.. ...+. .++..++. ...++.+++||++|+..- ...
T Consensus 73 ~l~~~gv~~~~~~-~~~-~t~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~l~~~d~v~~~g~~~~-~~~ 146 (312)
T PRK09513 73 LFSELGIANRFQV-VQG-RTRINVKLTEKDGEVTDF-NFSGF--EVTPADWERFVTDSLSWLGQFDMVAVSGSLPR-GVS 146 (312)
T ss_pred HHHHcCCCccEEE-CCC-CCEEEEEEEeCCCcEEEE-eCCCC--CCCHHHHHHHHHHHHhhcCCCCEEEEECCCCC-CCC
Confidence 8999999987764 443 688888888777887643 33332 24333321 235789999999986432 234
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccC
Q 008168 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVH 439 (575)
Q Consensus 360 ~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~ 439 (575)
.+.+..+++.+++.|.+|+||++.. . ....+..+++++++|.+|+..++|.......+
T Consensus 147 ~~~~~~~~~~a~~~g~~v~~D~~~~-~----------~~~~~~~~~~~l~~n~~E~~~l~g~~~~~~~~----------- 204 (312)
T PRK09513 147 PEAFTDWMTRLRSQCPCIIFDSSRE-A----------LVAGLKAAPWLVKPNRRELEIWAGRKLPELKD----------- 204 (312)
T ss_pred HHHHHHHHHHHHhcCCEEEEECChH-H----------HHHHhccCCeEEcCCHHHHHHHhCCCCCCHHH-----------
Confidence 6778888999999999999998721 1 12234467899999999999999875332111
Q ss_pred CcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhH
Q 008168 440 YEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYL 519 (575)
Q Consensus 440 ~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl 519 (575)
..+++..+.+.|++.||||+|.+|++++..++..++++ ++++ ++|||||||+|+|||+++|++| +++
T Consensus 205 -~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~~~--~vDttGAGDaf~ag~i~~l~~g-------~~~ 271 (312)
T PRK09513 205 -VIEAAHALREQGIAHVVISLGAEGALWVNASGEWIAKP---PACD--VVSTVGAGDSMVGGLIYGLLMR-------ESS 271 (312)
T ss_pred -HHHHHHHHHHcCCCEEEEEeCCCCcEEEeCCceEEecC---CCcc--ccCCCChHHHHHHHHHHHHHcC-------CCH
Confidence 12455667778999999999999999988765444443 3444 8999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 520 VRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 520 ~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
++|+++|+++|++++++.|. ++|+++++++||..
T Consensus 272 ~~a~~~A~a~Aa~~~~~~~~--~~~~~~e~~~~l~~ 305 (312)
T PRK09513 272 EHTLRLATAVSALAVSQSNV--GITDRPQLAAMMAR 305 (312)
T ss_pred HHHHHHHHHHHHHHhhCCCC--CCCCHHHHHHHHhc
Confidence 99999999999999999974 88999999999844
No 37
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=100.00 E-value=1.8e-34 Score=298.54 Aligned_cols=289 Identities=19% Similarity=0.203 Sum_probs=222.4
Q ss_pred cceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHHHHhCC
Q 008168 212 SAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNN 291 (575)
Q Consensus 212 ~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~~L~~~G 291 (575)
++.+|++.... +++. +....+......+||++.|+|++|++||.++.++|.||+| +|+.+++.|++.|
T Consensus 7 ~~~~D~~~~~~---~~~~--------~~~~~~~~~~~~~GG~~~N~a~~l~~lg~~~~~i~~vG~D-~g~~i~~~l~~~g 74 (303)
T TIGR03168 7 NPAIDLTIEVD---GLTP--------GEVNRVAAVRKDAGGKGINVARVLARLGAEVVATGFLGGF-TGEFIEALLAEEG 74 (303)
T ss_pred chHHeEEEEcC---cccc--------CceeecCcccccCCcchhhHHHHHHHcCCCeEEEEEeCCc-hhHHHHHHHHHcC
Confidence 45678886652 2221 1222446677999999999999999999999999999998 7999999999999
Q ss_pred CccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccch------hhhccCcEEEEecccccccchHHHHHH
Q 008168 292 VQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI------DVLKEAKMFYFSTHSMLERNMKSTTLQ 365 (575)
Q Consensus 292 Idt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~------~~l~~ad~v~~sg~~l~~~~~~e~~~~ 365 (575)
|++.++... ..|+.++++++.+|++..+ ...+. .++.+++.. +.+++++++|++++... ....+.+..
T Consensus 75 I~~~~i~~~--~~t~~~~~~~~~~g~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~-~~~~~~~~~ 148 (303)
T TIGR03168 75 IKNDFVEVK--GETRINVKIKESSGEETEL-NEPGP--EISEEELEQLLEKLRELLASGDIVVISGSLPP-GVPPDFYAQ 148 (303)
T ss_pred CCceEEECC--CCCEEeEEEEeCCCCEEEE-eCcCC--CCCHHHHHHHHHHHHHhccCCCEEEEeCCCCC-CCCHHHHHH
Confidence 999998764 3566777777777765543 33332 355554431 34789999999885321 134567788
Q ss_pred HHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcHHHH
Q 008168 366 AIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVI 445 (575)
Q Consensus 366 ~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~ 445 (575)
+++.++++|.+|+||++.. .+ ...+..++|++++|+.|+..++|.......+ ..+.+
T Consensus 149 ~~~~~~~~g~~v~~D~~~~-~~----------~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~------------~~~~~ 205 (303)
T TIGR03168 149 LIAIARKRGAKVILDTSGE-AL----------REALAAKPFLIKPNHEELEELFGRELKTEEE------------IIEAA 205 (303)
T ss_pred HHHHHHHCCCEEEEECCcH-HH----------HHHHhcCCcEECCCHHHHHHHhCCCCCCHHH------------HHHHH
Confidence 8999999999999998732 12 1233358999999999999999875332111 23556
Q ss_pred HHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHH
Q 008168 446 APLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKY 525 (575)
Q Consensus 446 ~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~ 525 (575)
..+...+++.||||+|.+|++++++++..++++ ++++ ++|||||||+|+|||+++|++| +++.+|+++
T Consensus 206 ~~l~~~g~~~vviT~g~~G~~~~~~~~~~~~~~---~~~~--~vDttGAGD~F~a~~~~~l~~g-------~~i~~a~~~ 273 (303)
T TIGR03168 206 RELLDRGAENVLVSLGADGALLVTKEGALKATP---PKVE--VVNTVGAGDSMVAGFLAGLARG-------LSLEEALRF 273 (303)
T ss_pred HHHHHcCCCEEEEeecCCCcEEEeCCceEEeeC---Ccce--eecCcCHHHHHHHHHHHHHHcC-------CCHHHHHHH
Confidence 667778999999999999999999876555554 3444 7999999999999999999999 999999999
Q ss_pred HHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 526 AIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 526 A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
|+++|+++|++.|+. .|+.++++++|.+
T Consensus 274 A~~~aa~~~~~~G~~--~~~~~~~~~~~~~ 301 (303)
T TIGR03168 274 AVAAGSAAAFSPGTG--LPDPEDVEELLDQ 301 (303)
T ss_pred HHHHHHHHhcCCCcC--CCCHHHHHHHHhh
Confidence 999999999999994 6999999998754
No 38
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=100.00 E-value=2.6e-34 Score=298.57 Aligned_cols=296 Identities=15% Similarity=0.137 Sum_probs=225.8
Q ss_pred EEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHH
Q 008168 207 VCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYY 286 (575)
Q Consensus 207 VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~~ 286 (575)
+.|.=++.+|+++.. ++++. +...++......+||+++|+|++|++||.++.+++.+|+ .+|+++++.
T Consensus 5 ~~~~~~p~~d~~~~~---~~~~~--------~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~i~~vG~-~~g~~i~~~ 72 (309)
T PRK10294 5 YTLTLAPSLDSATIT---PQIYP--------EGKLRCSAPVFEPGGGGINVARAIAHLGGSATAIFPAGG-ATGEHLVSL 72 (309)
T ss_pred EEEecChHHeEEEEe---Cceee--------CCeEEeccceecCCccHHHHHHHHHHcCCCeEEEEEecC-ccHHHHHHH
Confidence 345557889999876 34442 112245677888999999999999999999999999996 799999999
Q ss_pred HHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccch-----hhhccCcEEEEecccccccchHH
Q 008168 287 MNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI-----DVLKEAKMFYFSTHSMLERNMKS 361 (575)
Q Consensus 287 L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~-----~~l~~ad~v~~sg~~l~~~~~~e 361 (575)
|++.||++.++.+.+. .++.+++.++.+|++.++ ...++. ++.++++. ..++.++++|++|+.. .....+
T Consensus 73 l~~~gv~~~~~~~~~~-~~~~~~i~~~~~g~~~~~-~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~i~g~~~-~~~~~~ 147 (309)
T PRK10294 73 LADENVPVATVEAKDW-TRQNLHVHVEASGEQYRF-VMPGAA--LNEDEFRQLEEQVLEIESGAILVISGSLP-PGVKLE 147 (309)
T ss_pred HHHcCCCceEEECCCC-CeeeEEEEEcCCCcEEEE-ECCCCC--CCHHHHHHHHHHHHhcCCCCEEEEeCCCC-CCCCHH
Confidence 9999999999887554 344445667777876543 444432 55544432 2367799999998643 223467
Q ss_pred HHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCc
Q 008168 362 TTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYE 441 (575)
Q Consensus 362 ~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~ 441 (575)
.+.++++.+++.|++|+||++.. .....+ .++++|++++|.+|+..|++.......+ .
T Consensus 148 ~~~~~~~~a~~~g~~v~~D~~~~--------~~~~~~--~~~~~~~i~~n~~E~~~l~g~~~~~~~~------------~ 205 (309)
T PRK10294 148 KLTQLISAAQKQGIRCIIDSSGD--------ALSAAL--AIGNIELVKPNQKELSALVNRDLTQPDD------------V 205 (309)
T ss_pred HHHHHHHHHHHcCCeEEEeCCCH--------HHHHHH--hcCCCeEECCCHHHHHHHhCCCCCCHHH------------H
Confidence 88899999999999999998621 011111 2468999999999999999865432111 1
Q ss_pred HHHHHHHhhcC-CCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHH
Q 008168 442 PEVIAPLWHEN-LKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLV 520 (575)
Q Consensus 442 ~e~~~~l~~~g-~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~ 520 (575)
.++++.++..+ ++.||||+|.+|++++++++..++++ ++++ ++|||||||+|+|||+++|++| +++.
T Consensus 206 ~~a~~~l~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~---~~v~--vvDttGAGDaf~ag~l~~l~~g-------~~~~ 273 (309)
T PRK10294 206 RKAAQELVNSGKAKRVVVSLGPQGALGVDSENCIQVVP---PPVK--SQSTVGAGDSMVGAMTLKLAEN-------ASLE 273 (309)
T ss_pred HHHHHHHHHcCCCCEEEEecCCCceEEEcCCccEEEeC---CCcc--cCCCcchHHHHHHHHHHHHHcC-------CCHH
Confidence 35566777766 89999999999999998776555654 3454 7999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 521 RTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 521 eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
+|+++|+++|+++|++.|+. .+..++++++++.
T Consensus 274 ~al~~a~a~aa~~v~~~G~~--~~~~~~~~~~~~~ 306 (309)
T PRK10294 274 EMVRFGVAAGSAATLNQGTR--LCSHDDTQKIYAY 306 (309)
T ss_pred HHHHHHHHHHHHHhcCCCCC--CCCHHHHHHHHHH
Confidence 99999999999999999996 3688888888753
No 39
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=100.00 E-value=3.8e-34 Score=297.30 Aligned_cols=294 Identities=15% Similarity=0.112 Sum_probs=220.1
Q ss_pred EECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHHHH
Q 008168 209 CFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMN 288 (575)
Q Consensus 209 viG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~~L~ 288 (575)
|.=++.+|+.... ++++... ......+...+||+++|+|++|++||.++.++|.+|+| +|+++++.|+
T Consensus 4 ~~~~p~~d~~~~~---~~~~~~~--------~~~~~~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~~-~G~~i~~~l~ 71 (309)
T TIGR01231 4 VTLNPSVDISYPL---TALKLDT--------VNRVQEVSKTAGGKGLNVTRVLAQVGDPVLASGFLGGK-LGEFIEKELD 71 (309)
T ss_pred EEcchHHeEEEEc---CCeeeCc--------eEeeceeeecCCccHHHHHHHHHHcCCCeEEEEEecCh-hHHHHHHHHH
Confidence 3346778887654 3444321 22346688999999999999999999999999999975 9999999999
Q ss_pred hCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccc----cc--hhhhccCcEEEEecccccccchHHH
Q 008168 289 VNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSE----IN--IDVLKEAKMFYFSTHSMLERNMKST 362 (575)
Q Consensus 289 ~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~----i~--~~~l~~ad~v~~sg~~l~~~~~~e~ 362 (575)
+.||++.++...+ .|+.+++++. +|++++. ..+++. +..+. +. ...+.++++||++|+... ..+...
T Consensus 72 ~~GV~~~~~~~~~--~t~~~~~~~~-~g~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~-~~~~~~ 144 (309)
T TIGR01231 72 HSDIKHAFYKISG--ETRNCIAILH-EGQQTEI-LEQGPE--ISNQEAAGFLKHFEQLLEKVEVVAISGSLPK-GLPQDY 144 (309)
T ss_pred HcCCceeEEECCC--CCEEeEEEEe-CCCEEEE-eCCCCC--CCHHHHHHHHHHHHHHhccCCEEEEECCCCC-CcCHHH
Confidence 9999999887643 4666666664 5787664 444442 22111 11 245788999999986432 234577
Q ss_pred HHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcH
Q 008168 363 TLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEP 442 (575)
Q Consensus 363 ~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~ 442 (575)
+.++++.+++.|++|+||++.+. ...+...+.++|++++|.+|+..|+|.......+ . ..
T Consensus 145 ~~~~~~~a~~~g~~v~~D~~~~~---------~~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~----~-------~~ 204 (309)
T TIGR01231 145 YAQIIERCQNKGVPVVLDCSGAT---------LQTVLENPAKPTVIKPNIEELSQLLNQELTEDLE----S-------LK 204 (309)
T ss_pred HHHHHHHHHhCCCeEEEECChHH---------HHHHHhccCCCeEEcCCHHHHHHHhCCCCCCCHH----H-------HH
Confidence 88999999999999999987421 1123345678999999999999999864321100 0 12
Q ss_pred HHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHH
Q 008168 443 EVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRT 522 (575)
Q Consensus 443 e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eA 522 (575)
+.++.++..|++.||||+|.+|++++.+++..+++. ++++ +||||||||+|+|||+++|++| +++++|
T Consensus 205 ~~~~~~~~~g~~~vivT~G~~G~~~~~~~~~~~~~~---~~v~--vvDttGAGDaF~agfl~~l~~g-------~~~~~a 272 (309)
T TIGR01231 205 QALSQPLFSGIEWIIVSLGAQGAFAKHGHTFYKVNI---PTIS--VVNPVGSGDSTVAGITSALLNH-------ESDHDL 272 (309)
T ss_pred HHHHHHHHcCCCEEEEccCCCceEEEeCCeeEEeeC---CccC--cCCCcchHHHHHHHHHHHHHcC-------CCHHHH
Confidence 445555667999999999999999998765444443 3454 7999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 523 IKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 523 l~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
+++|+++|++++++.+. +..+++++++++..
T Consensus 273 ~~~a~a~aa~~~~~~~~--~~~~~~~~~~~~~~ 303 (309)
T TIGR01231 273 LKKANTLGMLNAQEAQT--GHVNLNNYDDLFNQ 303 (309)
T ss_pred HHHHHHHHHHHhcCccc--CCCCHHHHHHHHhc
Confidence 99999999999998887 55788898888744
No 40
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=100.00 E-value=6.1e-34 Score=312.80 Aligned_cols=301 Identities=15% Similarity=0.130 Sum_probs=224.8
Q ss_pred CCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008168 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 203 ~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~ 282 (575)
..++|+|||++++|++..+. .++++++... + ..........+|| ++|+|++|++||.++.++|.||+|.+|++
T Consensus 9 ~~~~ilviG~~~lD~~~~~~-~~~~~~~~~~-~----~~~~~~~~~~~GG-a~NvA~~la~LG~~v~~i~~vG~D~~g~~ 81 (473)
T PRK11316 9 ERAGVLVVGDVMLDRYWYGP-TSRISPEAPV-P----VVKVNQIEERPGG-AANVAMNIASLGAQARLVGLTGIDEAARA 81 (473)
T ss_pred CCCcEEEECccEEeeeeecc-cceeCCCCCC-C----EEEeeeEEecCcH-HHHHHHHHHHcCCcEEEEEEEcCCHHHHH
Confidence 34579999999999997642 1233221100 0 1123567788999 69999999999999999999999999999
Q ss_pred HHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccc---hhhhccCcEEEEecccccccch
Q 008168 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN---IDVLKEAKMFYFSTHSMLERNM 359 (575)
Q Consensus 283 l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~---~~~l~~ad~v~~sg~~l~~~~~ 359 (575)
+++.|++.||+++++.+ ++.+|+.++++++.++.. ..+........++.+.+. ...+.++++||++++.. ..
T Consensus 82 i~~~L~~~gI~~~~v~~-~~~~T~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~is~~~~---~~ 156 (473)
T PRK11316 82 LSKLLAAVGVKCDFVSV-PTHPTITKLRVLSRNQQL-IRLDFEEGFEGVDPQPLLERIEQALPSIGALVLSDYAK---GA 156 (473)
T ss_pred HHHHHHHcCCceeEEEc-CCCCCCeeEEEEeCCceE-EecccccCCCchhHHHHHHHHHHHhccCCEEEEecCCc---cc
Confidence 99999999999998876 567888888888654432 211111111222333321 24578999999987542 12
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccC
Q 008168 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVH 439 (575)
Q Consensus 360 ~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~ 439 (575)
.+.+..+++.+++.|++|++||+... + ..+..+|++++|..|++.|+|..... .+
T Consensus 157 ~~~~~~~~~~~k~~g~~vv~Dp~~~~-~------------~~~~~~dil~pN~~Ea~~l~g~~~~~-~~----------- 211 (473)
T PRK11316 157 LASVQAMIQLARKAGVPVLIDPKGTD-F------------ERYRGATLLTPNLSEFEAVVGKCKDE-AE----------- 211 (473)
T ss_pred hhHHHHHHHHHHhcCCeEEEeCCCCC-c------------cccCCCeEECcCHHHHHHHhCCCCCH-HH-----------
Confidence 35677889999999999999987431 1 23568999999999999999842211 00
Q ss_pred CcHHHHHHHh-hcCCCEEEEEcCCCcEEEEEcCCc-eeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCch
Q 008168 440 YEPEVIAPLW-HENLKVLFVTNGTSKVHYYTKEDD-GAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKG 517 (575)
Q Consensus 440 ~~~e~~~~l~-~~g~k~VVVT~G~~Ga~v~~~~~~-~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~ 517 (575)
..+.+++++ +.|++.|+||+|.+|++++++++. .++++ ++++ ++||+||||+|+|||+++|++| +
T Consensus 212 -~~~~~~~l~~~~g~~~vvVT~G~~G~~~~~~~~~~~~~~~---~~v~--vvDttGAGDaF~aa~~~~l~~g-------~ 278 (473)
T PRK11316 212 -LVEKGMKLIADYDLSALLVTRSEQGMTLLQPGKAPLHLPT---QARE--VYDVTGAGDTVISVLAAALAAG-------N 278 (473)
T ss_pred -HHHHHHHHHHhcCCCEEEEEecCCCcEEEecCCceEEecC---cCCC--CCCCCCCcHHHHHHHHHHHHcC-------C
Confidence 123455554 569999999999999999887653 44443 3454 7999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 518 YLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 518 sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
++++|+++|+++|++++++.|+. .++.++++.+|..
T Consensus 279 ~~~~al~~A~a~Aa~~v~~~G~~--~~~~~~l~~~l~~ 314 (473)
T PRK11316 279 SLEEACALANAAAGVVVGKLGTS--TVSPIELENALRG 314 (473)
T ss_pred CHHHHHHHHHHHHHhhcccCCCc--cCCHHHHHHHHhc
Confidence 99999999999999999999985 3789999999874
No 41
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=100.00 E-value=1e-33 Score=290.91 Aligned_cols=279 Identities=16% Similarity=0.160 Sum_probs=215.0
Q ss_pred EEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHH
Q 008168 207 VCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYY 286 (575)
Q Consensus 207 VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~~ 286 (575)
..++|++++|++... +++|. +...........+||+++|+|++|++||.+|.++|.||+| +|+.+++.
T Consensus 3 ~~~~~~~~~D~~~~~---~~~~~--------~~~~~~~~~~~~~GG~~~Nva~~la~lG~~v~~is~vG~D-~g~~i~~~ 70 (289)
T cd01164 3 YTVTLNPAIDLTIEL---DQLQP--------GEVNRVSSTRKDAGGKGINVARVLKDLGVEVTALGFLGGF-TGDFFEAL 70 (289)
T ss_pred EEEecChHHeEEEEc---CcccC--------CceeecccccccCCcchhHHHHHHHHcCCCeEEEEEccCc-hhHHHHHH
Confidence 468899999999887 34442 1223456778899999999999999999999999999998 89999999
Q ss_pred HHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccch------hhhccCcEEEEecccccccchH
Q 008168 287 MNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI------DVLKEAKMFYFSTHSMLERNMK 360 (575)
Q Consensus 287 L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~------~~l~~ad~v~~sg~~l~~~~~~ 360 (575)
|++.||++.++... ..|+.++++++.+|+++. +...++ .++.++++. ..+++++++|+++.... ....
T Consensus 71 l~~~gi~~~~~~~~--~~t~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~ 144 (289)
T cd01164 71 LKEEGIPDDFVEVA--GETRINVKIKEEDGTETE-INEPGP--EISEEELEALLEKLKALLKKGDIVVLSGSLPP-GVPA 144 (289)
T ss_pred HHHcCCCceEEECC--CCCEEEEEEEeCCCCEEE-EeCCCC--CCCHHHHHHHHHHHHHhcCCCCEEEEeCCCCC-CcCH
Confidence 99999999988764 346777777766666544 333332 354444321 34578999999975321 1234
Q ss_pred HHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhh-ccCeEeecCHHHHHHhhCCCCCCcccccccccccccC
Q 008168 361 STTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAW-TLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVH 439 (575)
Q Consensus 361 e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll-~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~ 439 (575)
..+..+++.+++.+++|+||++... +.+++ +++|++++|++|+..+++.......+
T Consensus 145 ~~~~~~~~~~~~~~~~i~~D~~~~~------------~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~----------- 201 (289)
T cd01164 145 DFYAELVRLAREKGARVILDTSGEA------------LLAALAAKPFLIKPNREELEELFGRPLGDEED----------- 201 (289)
T ss_pred HHHHHHHHHHHHcCCeEEEECChHH------------HHHHHhcCCcEECCCHHHHHHHhCCCCCCHHH-----------
Confidence 5777888889999999999986321 12233 79999999999999999865332111
Q ss_pred CcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhH
Q 008168 440 YEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYL 519 (575)
Q Consensus 440 ~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl 519 (575)
..+.+..+.+.+++.||||+|++|++++.+++..++++ ++++ ++|||||||+|+|||+++|++| +++
T Consensus 202 -~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~---~~~~--vvDttGAGDaf~a~~i~~l~~g-------~~~ 268 (289)
T cd01164 202 -VIAAARKLIERGAENVLVSLGADGALLVTKDGVYRASP---PKVK--VVSTVGAGDSMVAGFVAGLAQG-------LSL 268 (289)
T ss_pred -HHHHHHHHHHcCCCEEEEecCCCCCEEEcCCcEEEecC---CCcc--ccCCCChHHHHHHHHHHHHHcC-------CCH
Confidence 13556677788999999999999999998765444433 3444 7999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHhccccc
Q 008168 520 VRTIKYAIDCGVRDQWSQAR 539 (575)
Q Consensus 520 ~eAl~~A~aaAA~~v~~~G~ 539 (575)
++|+++|+++|+++|++.|+
T Consensus 269 ~~a~~~A~~~Aa~~~~~~G~ 288 (289)
T cd01164 269 EEALRLAVAAGSATAFSPGT 288 (289)
T ss_pred HHHHHHHHHHHHHHhcCccC
Confidence 99999999999999999986
No 42
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=2.3e-32 Score=286.82 Aligned_cols=273 Identities=15% Similarity=0.092 Sum_probs=214.0
Q ss_pred CCCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008168 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 202 ~~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~ 281 (575)
...++|+|||++++|++.... ......+||+++|+|.+|++||.++.++|.||+|..
T Consensus 9 ~~~~~vlvvG~~~~D~i~~~g---------------------~~~~~~~GG~a~N~A~alarLG~~~~lis~VG~D~~-- 65 (335)
T PLN02630 9 IPQRRVLIVGNYCHDVLIQNG---------------------SVTAESLGGAASFISNVLDALSVECELVSKVGPDFL-- 65 (335)
T ss_pred CCCCCEEEEeeeeeeEEEeCC---------------------cEEEEecCcHHHHHHHHHHHcCCceEEEEEecCCcc--
Confidence 345789999999999996531 124578999999999999999999999999999942
Q ss_pred HHHHHHHhCCCccceEEEcCCCCceEEEEEEcC-----CCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccc
Q 008168 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGK-----RGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLE 356 (575)
Q Consensus 282 ~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~-----~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~ 356 (575)
.+|+...+.. ++.+|+.+++++++ +|++++ ++.++++..+++++++...+..++++++.+.
T Consensus 66 --------~~v~~~~~~~-~~~~T~~~~~~~~~g~~~~~~e~~i-~~~~ga~~~l~~~di~~~~~~~~~~~~l~~e---- 131 (335)
T PLN02630 66 --------YQVSHPPIVI-PDSKTTEFHADFDQGIDGNGHEDRV-LKRVCACDPIEPSDIPDMRYEFGMAVGVAGE---- 131 (335)
T ss_pred --------ccccccceec-CCCCceEEEEEEcCCcccCCCCeEE-EEeccccCCCChHHCCHHHhcccceeeecCC----
Confidence 3777655544 66789999888776 457765 4778999999999887546777888888643
Q ss_pred cchHHHHHHHHHHHhh-----cCCEEEEcCCCC-CccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCccccc
Q 008168 357 RNMKSTTLQAIKISKQ-----FGGIIFYDVNLP-LPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTK 430 (575)
Q Consensus 357 ~~~~e~~~~~l~~ak~-----~G~~Vv~D~~~~-~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~ 430 (575)
.+.+...++++.++. +|+.++||++.. ..+|... ...+..+++++|++++|++|+..+ .
T Consensus 132 -i~~e~~~~~~~~a~~v~~D~~g~~~~~Dp~~~~~~~~~~~---~~~~~~~L~~iDil~~ne~Ea~~l-~---------- 196 (335)
T PLN02630 132 -ILPETLERMVEICDVVVVDIQALIRVFDPVDGTVKLVKLE---ETGFYDMLPRIGFLKASSEEALFI-D---------- 196 (335)
T ss_pred -CcHHHHHHHHHHhhhheeccCceEEecCCcccccccchhh---HHHHHHHHHhCCEEEecHHHHhhc-C----------
Confidence 235678888888887 789999999853 4455311 123668899999999999999876 1
Q ss_pred ccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCC
Q 008168 431 NNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQP 510 (575)
Q Consensus 431 ~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~ 510 (575)
.+.+. + ...||||+|++|++++++++..++++ ++++ ++|||||||+|+|||+++|++|
T Consensus 197 -----------~~~~~---~--~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--~vDttGAGDaF~agfi~~l~~g- 254 (335)
T PLN02630 197 -----------VEEVR---Q--KCCVIVTNGKKGCRIYWKDGEMRVPP---FPAI--QVDPTGAGDSFLGGFVAGLVQG- 254 (335)
T ss_pred -----------HHHHc---c--CCEEEEEECCCceEEEECCeeEEeCC---CCCC--CCCCCChHHHHHHHHHHHHHcC-
Confidence 01111 1 23899999999999999876555544 3454 7999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCCC
Q 008168 511 HLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEPD 556 (575)
Q Consensus 511 ~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~~ 556 (575)
+++.+|+++|+++|++++++.|. .-.+.+++++++++.
T Consensus 255 ------~~~~~a~~~A~a~aa~~v~~~G~--~~~~~~~l~~~~~~i 292 (335)
T PLN02630 255 ------LAVPDAALLGNYFGSLAVEQVGI--PKFDLRQLQRVKDEV 292 (335)
T ss_pred ------CCHHHHHHHHHHHHHHHhCcCCC--CCCCHHHHHHHhhcE
Confidence 99999999999999999999996 335888998887653
No 43
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2.9e-32 Score=274.87 Aligned_cols=254 Identities=17% Similarity=0.171 Sum_probs=191.1
Q ss_pred cEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008168 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~ 285 (575)
+|+|+|++++|++... ......+||+++|+|++|++||.++.++|.||+|.+|+ ++
T Consensus 1 ~il~iG~~~iD~~~~~----------------------~~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~g~--~~ 56 (254)
T cd01937 1 KIVIIGHVTIDEIVTN----------------------GSGVVKPGGPATYASLTLSRLGLTVKLVTKVGRDYPDK--WS 56 (254)
T ss_pred CeEEEcceeEEEEecC----------------------CceEEecCchhhhHHHHHHHhCCCeEEEEeeCCCchHH--HH
Confidence 5899999999999642 23567899999999999999999999999999999998 68
Q ss_pred HHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHHH
Q 008168 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQ 365 (575)
Q Consensus 286 ~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~ 365 (575)
.|++.||++..+ . ...|+.+++.++.+|++++.+ ..+....+... ...+.+++++|+++++ .+....
T Consensus 57 ~l~~~gv~~~~~--~-~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~ 123 (254)
T cd01937 57 DLFDNGIEVISL--L-STETTTFELNYTNEGRTRTLL-AKCAAIPDTES---PLSTITAEIVILGPVP------EEISPS 123 (254)
T ss_pred HHHHCCcEEEEe--c-CCCeEEEEEEecCCCCeeeee-ccccCCccccc---ccccCcccEEEECCCc------chhcHH
Confidence 899999996432 3 335666666677677776653 34443322221 2346789999998642 222223
Q ss_pred HHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcHHHH
Q 008168 366 AIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVI 445 (575)
Q Consensus 366 ~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~ 445 (575)
+.+.+ .+|++|++.....|. .....+.++++++|++++|.+|+..+.. ..+.+
T Consensus 124 ~~~~~----~~v~~D~~~~~~~~~---~~~~~~~~~l~~~di~~~n~~E~~~~~~--------------------~~~~~ 176 (254)
T cd01937 124 LFRKF----AFISLDAQGFLRRAN---QEKLIKCVILKLHDVLKLSRVEAEVIST--------------------PTELA 176 (254)
T ss_pred HHhhh----hheeEccccceeecc---ccchHHHhhcccCcEEEEcHHHHhhcCC--------------------HHHHH
Confidence 33222 689999975322232 1123367889999999999999987311 23566
Q ss_pred HHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHH
Q 008168 446 APLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKY 525 (575)
Q Consensus 446 ~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~ 525 (575)
+.+.+.|++.||||+|.+|++++++++..++++ ++++ ++|||||||+|+|||+++|++| +++++|+++
T Consensus 177 ~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~---~~~~--~vdt~GAGD~f~a~~~~~l~~g-------~~~~~a~~~ 244 (254)
T cd01937 177 RLIKETGVKEIIVTDGEEGGYIFDGNGKYTIPA---SKKD--VVDPTGAGDVFLAAFLYSRLSG-------KDIKEAAEF 244 (254)
T ss_pred HHHHHcCCCEEEEeeCCcceEEEECCccEEccc---cCce--eccCCCchHHHHHHHHHHHHcC-------CCHHHHHHH
Confidence 677788999999999999999999876555443 3444 7999999999999999999999 899999999
Q ss_pred HHHHHHHHhc
Q 008168 526 AIDCGVRDQW 535 (575)
Q Consensus 526 A~aaAA~~v~ 535 (575)
|+++|+++|+
T Consensus 245 a~~~aa~~i~ 254 (254)
T cd01937 245 AAAAAAKFIE 254 (254)
T ss_pred HHHHHHHHhC
Confidence 9999999874
No 44
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2.7e-32 Score=278.88 Aligned_cols=274 Identities=14% Similarity=0.162 Sum_probs=201.0
Q ss_pred cEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008168 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~ 285 (575)
.|+|+|++++|++.... ..+...+||++.|+|++|++|| .+.++|.||+| +|+.+++
T Consensus 1 ~v~~~G~~~~D~~~~~~---------------------~~~~~~~GG~a~N~a~~la~lg-~v~~i~~vG~D-~g~~~~~ 57 (277)
T cd01946 1 SLLVVGSVAFDAIETPF---------------------GKVDKALGGSATYFSLSASYFT-DVRLVGVVGED-FPEEDYK 57 (277)
T ss_pred CeEEEEEeeeeeecCCC---------------------ceeeeccCchHHHHHHHHHHhc-cceeEEeccCc-ChHHHHH
Confidence 38999999999994220 1245678999999999999998 69999999999 8999999
Q ss_pred HHHhCCCccceEEEcCCCCceEEEEEEc--CCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHH
Q 008168 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIG--KRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTT 363 (575)
Q Consensus 286 ~L~~~GIdt~~v~~~~~~~T~~~~i~vd--~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e~~ 363 (575)
.|++.||+++++.+.++..|........ .++...+. ........+.+ .+ ...+.+++++|+++++ .+..
T Consensus 58 ~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~-~~~~~~~~~v~~~~~~------~~~~ 128 (277)
T cd01946 58 LLNSHNIVTLGLLSKEDGKTFHWAGRYHYDLNEADTLD-TDLNVFADFDP-QL-PEHYKDSEFVFLGNIA------PELQ 128 (277)
T ss_pred HHHhccCcceeEEEecCCCeEEEeeEehhhcccccchh-hhhhHHhhcCC-CC-hHHhhcCCEEEECCCC------HHHH
Confidence 9999999999998877666632211110 01111111 11111112222 12 2457889999998642 3456
Q ss_pred HHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcHH
Q 008168 364 LQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPE 443 (575)
Q Consensus 364 ~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e 443 (575)
..+++.+++. .+|+||+. .+|. ....+.+.++++++|++++|.+|+..|+|... ..+
T Consensus 129 ~~~~~~~~~~-~~v~~D~~---~~~~--~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~~-----------------~~~ 185 (277)
T cd01946 129 REVLEQVKDP-KLVVMDTM---NFWI--SIKPEKLKKVLAKVDVVIINDGEARQLTGAAN-----------------LVK 185 (277)
T ss_pred HHHHHHHHhC-CEEEEccH---HHhh--hhhHHHHHHHhccCCEEeCCHHHHHHHhCCch-----------------HHH
Confidence 6777878776 88999973 3563 12345677899999999999999999987431 235
Q ss_pred HHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHH
Q 008168 444 VIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTI 523 (575)
Q Consensus 444 ~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl 523 (575)
.++.+.+.|++.||||+|.+|++++++++..++++ ++++ .++|||||||+|+|||+++|+++..+ ...++++|+
T Consensus 186 ~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~~~-~~vDttGAGDaF~Agfl~~l~~~~~~--~~~~~~~a~ 259 (277)
T cd01946 186 AARLILAMGPKALIIKRGEYGALLFTDDGYFAAPA---YPLE-SVFDPTGAGDTFAGGFIGYLASQKDT--SEANMRRAI 259 (277)
T ss_pred HHHHHHHcCCCEEEEecCCCcEEEEECCceEEcCC---cccC-ccCCCCCchHHHHHHHHHHHHhCCCc--chhhHHHHH
Confidence 66778888999999999999999998765444443 2332 26899999999999999999987221 124699999
Q ss_pred HHHHHHHHHHhcccccC
Q 008168 524 KYAIDCGVRDQWSQART 540 (575)
Q Consensus 524 ~~A~aaAA~~v~~~G~~ 540 (575)
++|+++|+++|++.|+.
T Consensus 260 ~~a~~~aa~~~~~~G~~ 276 (277)
T cd01946 260 IYGSAMASFCVEDFGTK 276 (277)
T ss_pred HHhHHHHhhhhhhcCCC
Confidence 99999999999999974
No 45
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-31 Score=271.92 Aligned_cols=271 Identities=18% Similarity=0.220 Sum_probs=220.8
Q ss_pred ccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcC-CCCe
Q 008168 240 LWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGK-RGRL 318 (575)
Q Consensus 240 ~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~-~Ger 318 (575)
+.+.......+||+|.|||++|+.||.++..+|.+|.+ .|++|.+.|+..||...++.+.. .|..++-+.+. +|..
T Consensus 25 vNr~~~~~~~aGGKGINVa~vL~~lG~~~~a~GflGg~-tg~~~~~~l~~~gi~~~fv~v~g--~TRinvki~~~~~~~~ 101 (310)
T COG1105 25 VNRVRAVTKTAGGKGINVARVLKDLGIPVTALGFLGGF-TGEFFVALLKDEGIPDAFVEVKG--DTRINVKILDEEDGEE 101 (310)
T ss_pred eeeeccceecCCCCceeHHHHHHHcCCCceEEEecCCc-cHHHHHHHHHhcCCCceEEEccC--CCeeeEEEEecCCCcE
Confidence 33557788999999999999999999999999999997 89999999999999999988754 67777777765 3333
Q ss_pred EEEEecCCccccCCccccc------hhhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCch
Q 008168 319 RMTCVKPCAEDALTKSEIN------IDVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGE 392 (575)
Q Consensus 319 ~~~~~~~ga~~~lt~~~i~------~~~l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~ 392 (575)
+ .+..+|+ .++.+++. ...+...|+|+++|... ...+.+.+.++++.+++.|++|++|.+.
T Consensus 102 T-ein~~Gp--~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP-~g~~~d~y~~li~~~~~~g~~vilD~Sg--------- 168 (310)
T COG1105 102 T-EINFPGP--EISEAELEQFLEQLKALLESDDIVVLSGSLP-PGVPPDAYAELIRILRQQGAKVILDTSG--------- 168 (310)
T ss_pred E-EecCCCC--CCCHHHHHHHHHHHHHhcccCCEEEEeCCCC-CCCCHHHHHHHHHHHHhcCCeEEEECCh---------
Confidence 3 3344443 56666654 12367889999998532 2356889999999999999999999752
Q ss_pred hHHHHHHHhh-ccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcC
Q 008168 393 ETKMFIQQAW-TLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKE 471 (575)
Q Consensus 393 ~~~~~l~~ll-~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~ 471 (575)
+.+.+.+ ..+++|+||.+|+..++|.+.....| ..++++.++..|+++|||++|++|+++.+++
T Consensus 169 ---~~L~~~L~~~P~lIKPN~~EL~~~~g~~~~~~~d------------~i~~a~~l~~~g~~~ViVSlG~~Gal~~~~~ 233 (310)
T COG1105 169 ---EALLAALEAKPWLIKPNREELEALFGRELTTLED------------VIKAARELLAEGIENVIVSLGADGALLVTAE 233 (310)
T ss_pred ---HHHHHHHccCCcEEecCHHHHHHHhCCCCCChHH------------HHHHHHHHHHCCCCEEEEEecCcccEEEccC
Confidence 2232333 45899999999999999988765433 2366777888999999999999999999998
Q ss_pred CceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHH
Q 008168 472 DDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEE 551 (575)
Q Consensus 472 ~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~ 551 (575)
..+++.. ++++ +++|+||||+++|||+++++++ +++++++++|++||+.++++.|. +.|+.+++++
T Consensus 234 ~~~~a~~---p~~~--vvstVGAGDs~VAGf~~~~~~~-------~~~e~~l~~avA~g~a~~~~~~~--~~~~~~~~~~ 299 (310)
T COG1105 234 GVYFASP---PKVQ--VVSTVGAGDSMVAGFLAGLLKG-------KSLEEALRFAVACGAAAASQKGT--GIPDLDQLKK 299 (310)
T ss_pred CeEEEeC---CCcc--eecCcCchHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHhhcCCC--CCCCHHHHHH
Confidence 7655542 3455 8999999999999999999999 99999999999999999999988 7899999998
Q ss_pred hhCC
Q 008168 552 EVEP 555 (575)
Q Consensus 552 ~l~~ 555 (575)
++.+
T Consensus 300 ~~~~ 303 (310)
T COG1105 300 IYAQ 303 (310)
T ss_pred Hhhh
Confidence 8755
No 46
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=9.4e-31 Score=263.55 Aligned_cols=307 Identities=15% Similarity=0.184 Sum_probs=236.4
Q ss_pred EEEECcceeeeeccCC----------CCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCC---CeEEEEE
Q 008168 207 VCCFGSAQHAFVPSGR----------PANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGG---KVAFMGK 273 (575)
Q Consensus 207 VlviG~~~vDii~~~~----------~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~---~v~lig~ 273 (575)
.+.+|++++|+...+. ..+++..++.|..+.+...........+||++.|+++++++++. .+.|+|.
T Consensus 9 l~G~gnpLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~~~E~~~~~~~~~~AGGs~qNt~R~aq~~~~~p~~~~f~Gs 88 (343)
T KOG2854|consen 9 LVGLGNPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGLFDELMEGFNVKYSAGGSAQNTLRIAQWLLQQPGATVFFGS 88 (343)
T ss_pred eeccCccceeeeeccCHHHHHHcCCCCCcceecchhhHHHHHHHhhcccEEecCCchhHHHHHHHHHHccCCCceEEEee
Confidence 4558999999997762 12233333446666666666678899999999999999999977 8999999
Q ss_pred eCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccc----hhhhccCcEEEE
Q 008168 274 LGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN----IDVLKEAKMFYF 349 (575)
Q Consensus 274 VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~----~~~l~~ad~v~~ 349 (575)
||.|.+|+++++.++..||++.+- +.++.+|+.|.++++.++ |++ +.+.++...++.++++ +..+..+.++|+
T Consensus 89 vG~Dk~ge~l~~~~~~aGv~~~yq-~~~d~~TGtCavli~~~n-RSL-~anLgAAn~f~~dhl~~~~~~~lveka~v~yv 165 (343)
T KOG2854|consen 89 VGKDKFGELLKSKARAAGVNVHYQ-VKEDGPTGTCAVLITGDN-RSL-CANLGAANCFKVDHLDKEENWALVEKAKVFYV 165 (343)
T ss_pred ccCchHHHHHHHHHHhcCceEEEE-eccCCCCceEEEEEeCCC-cch-hhccchhhccCHHHhcchhhhhhhhheeEEEE
Confidence 999999999999999999998765 567789999999998766 555 5778888889888874 357889999999
Q ss_pred ecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccc
Q 008168 350 STHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDT 429 (575)
Q Consensus 350 sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~ 429 (575)
.|+.+ +..++++..+.+.+.+.+.+.+++++. ++. ...+++.+..+++++||||.|++|++.++........+.
T Consensus 166 ~Gffl--tv~p~ai~~v~qh~~e~~r~~~lnlsa--pfI--~q~~~~~l~~v~~y~DiifgNe~EA~af~~~~~~~t~dv 239 (343)
T KOG2854|consen 166 AGFFL--TVSPDAIRKVAQHAAENNRVFTLNLSA--PFI--SQFFKDALDKVLPYADIIFGNEDEAAAFARAHGWETKDV 239 (343)
T ss_pred EEEEE--EeChHHHHHHHHHHHHhcchhheeccc--hhH--HHHHHHHHHhhcCcceEEEcCHHHHHHHHHhhCCcccch
Confidence 99865 345778888888888887766666543 322 134567788899999999999999999985442211111
Q ss_pred cccccccccCCcHHHHHHHh------hcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHH
Q 008168 430 KNNARSKFVHYEPEVIAPLW------HENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIM 503 (575)
Q Consensus 430 ~~~~~~~~~~~~~e~~~~l~------~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl 503 (575)
++....+. ....++++||.|..++.+...+....++. ...+.. .++||+||||+|++||+
T Consensus 240 ------------~eia~~~~~~~k~~~~~~r~vvit~g~~~~i~~~~~~v~~~~v-~~~~~~-~ivDtnGAGDaFvgGFl 305 (343)
T KOG2854|consen 240 ------------KEIALKLSALPKVNGTRPRTVVITQGPDPVIVAEDGKVTAYPV-LPLPVE-EIVDTNGAGDAFVGGFL 305 (343)
T ss_pred ------------HHHhhHhhccccccccccceEEEccCCCceEEecCCceEEecc-ccccce-eeeeCCCchHHHHHHHH
Confidence 11111111 13468999999999999998854433332 222332 38999999999999999
Q ss_pred HHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcccccCCCCCC
Q 008168 504 RMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPP 545 (575)
Q Consensus 504 ~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt 545 (575)
++|.+| .++++|++.|+.+|+.++...|+ .+|+
T Consensus 306 ~~l~qg-------~~l~~cir~g~~aa~~vi~~~G~--~~p~ 338 (343)
T KOG2854|consen 306 SQLVQG-------KSLEECIRAGSYAASHVIRRVGC--TVPE 338 (343)
T ss_pred HHHHcC-------CCHHHHHHHHHHHhhheeeccCC--CCCC
Confidence 999999 99999999999999999999999 4555
No 47
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=5.3e-27 Score=240.89 Aligned_cols=303 Identities=18% Similarity=0.174 Sum_probs=224.5
Q ss_pred CCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008168 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 203 ~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~ 282 (575)
.+.+|+|+|++++|.|+.+. .+|+-++. -.++ .........+||+ +|||.+++.||.++.++|.+|.|..|+.
T Consensus 9 ~~~kVLVvGDvmLDrY~~G~-~~RISPEA-PVPV----v~v~~e~~rlGGA-aNVa~NiasLGa~a~l~GvvG~Deag~~ 81 (467)
T COG2870 9 KQAKVLVVGDVMLDRYWYGK-VSRISPEA-PVPV----VKVEKEEERLGGA-ANVAKNIASLGANAYLVGVVGKDEAGKA 81 (467)
T ss_pred cCCcEEEEcceeeeeecccc-ccccCCCC-CCce----EEecccccccccH-HHHHHHHHHcCCCEEEEEeeccchhHHH
Confidence 45689999999999999874 34544321 1111 1336677889995 8999999999999999999999999999
Q ss_pred HHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccc---hhhhccCcEEEEecccccccch
Q 008168 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN---IDVLKEAKMFYFSTHSMLERNM 359 (575)
Q Consensus 283 l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~---~~~l~~ad~v~~sg~~l~~~~~ 359 (575)
|...|...+|+..++ .+++.+|.+-..++..+.+. +.+.............+- ...+.+.++++++-|.-- .
T Consensus 82 L~~~l~~~~i~~~l~-~~~~r~T~~K~Rv~s~nQQl-lRvD~Ee~~~~~~~~~ll~~~~~~l~~~~~vVLSDY~KG---~ 156 (467)
T COG2870 82 LIELLKANGIDSDLL-RDKNRPTIVKLRVLSRNQQL-LRLDFEEKFPIEDENKLLEKIKNALKSFDALVLSDYAKG---V 156 (467)
T ss_pred HHHHHHhcCcccceE-eecCCCceeeeeeecccceE-EEecccccCcchhHHHHHHHHHHHhhcCCEEEEeccccc---c
Confidence 999999999996554 56778888877777543332 111110000001111111 346788999999977421 1
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccC
Q 008168 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVH 439 (575)
Q Consensus 360 ~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~ 439 (575)
...+..+|+.|+++|++|.+||-... -..+..+.+|+||..|++...|....+. +
T Consensus 157 L~~~q~~I~~ar~~~~pVLvDPKg~D-------------f~~Y~GAtLiTPN~~E~~~~vg~~~~e~-e----------- 211 (467)
T COG2870 157 LTNVQKMIDLAREAGIPVLVDPKGKD-------------FEKYRGATLITPNLKEFEEAVGKCKSEE-E----------- 211 (467)
T ss_pred chhHHHHHHHHHHcCCcEEECCCCcc-------------hhhhCCCeecCCCHHHHHHHHcccccHH-H-----------
Confidence 11267899999999999999985321 1346789999999999999999765431 1
Q ss_pred CcHHHHHHHhh-cCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchh
Q 008168 440 YEPEVIAPLWH-ENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGY 518 (575)
Q Consensus 440 ~~~e~~~~l~~-~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~s 518 (575)
..+..++|.. .+...++||++++|..+++.+...++|+ ...+ |.|.|||||+-.|.|..+|+.| .+
T Consensus 212 -l~~~g~kL~~~~~L~alLvTRsE~GMtL~~~~~~~h~pt---~AkE--VyDVTGAGDTVIa~la~~laaG-------~s 278 (467)
T COG2870 212 -LEERGQKLKEELDLSALLVTRSEKGMTLFQEGKPLHFPA---RAKE--VYDVTGAGDTVIAVLAAALAAG-------AS 278 (467)
T ss_pred -HHHHHHHHHHhhCcceEEEEeccCCceeecCCcccccch---hhee--eeeccCCCchHHHHHHHHHHcC-------CC
Confidence 1244555554 5889999999999999999887655554 2233 8999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCCCC
Q 008168 519 LVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEPDP 557 (575)
Q Consensus 519 l~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~~~ 557 (575)
+++|+.+||+||++.|...|+. ..+.+|+...+....
T Consensus 279 ~~eAc~lAN~AagiVVgKlGTa--tvs~~EL~nAV~pni 315 (467)
T COG2870 279 LEEACELANAAAGIVVGKLGTA--TVSPEELEMAVAPNI 315 (467)
T ss_pred HHHHHHHhhhhcceEEeeccce--eecHHHHHhhhccCc
Confidence 9999999999999999999994 568888877544433
No 48
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=2.4e-25 Score=214.58 Aligned_cols=280 Identities=17% Similarity=0.169 Sum_probs=206.3
Q ss_pred CCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008168 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 203 ~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~ 282 (575)
+|+.|||+|.+.+|+|..+. ..|-+.... +.....-.-||.+.|++-+|..||.++.|+|.+.....-++
T Consensus 3 ~~k~VLcVG~~~lD~iTivd---~~~fe~~~~-------r~~~g~wqRgG~asNvcTvlrlLG~~cef~Gvlsr~~~f~~ 72 (308)
T KOG2947|consen 3 EPKQVLCVGCTVLDVITIVD---KYPFEDSEI-------RCLSGRWQRGGNASNVCTVLRLLGAPCEFFGVLSRGHVFRF 72 (308)
T ss_pred CcceEEEeccEEEEEEEecc---CCCCCccce-------ehhhhhhhcCCCcchHHHHHHHhCCchheeeecccchhHHH
Confidence 46789999999999998762 333222111 22233345799999999999999999999999998888899
Q ss_pred HHHHHHhCCCccceEEEcCCCCceEEEEEEc-CCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHH
Q 008168 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIG-KRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKS 361 (575)
Q Consensus 283 l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd-~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e 361 (575)
|++.|++.||+++++.+....+ +...|+++ ..|.++++ +...+...++.+++..-.+....||||.+- ++.+
T Consensus 73 lLddl~~rgIdishcpftd~~p-p~ssiI~~r~s~trTil-~~dks~p~vT~~dF~kvdl~qy~WihfE~R-----np~e 145 (308)
T KOG2947|consen 73 LLDDLRRRGIDISHCPFTDHSP-PFSSIIINRNSGTRTIL-YCDKSLPDVTATDFEKVDLTQYGWIHFEAR-----NPSE 145 (308)
T ss_pred HHHHHHhcCCCcccCccccCCC-CcceEEEecCCCceEEE-EecCCCccccHHHhhhcccceeeeEEEecC-----ChHH
Confidence 9999999999999998766544 44444444 55677665 556677788888886556788999999863 2233
Q ss_pred HHHHHHHHHhh--------cCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccc
Q 008168 362 TTLQAIKISKQ--------FGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNA 433 (575)
Q Consensus 362 ~~~~~l~~ak~--------~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~ 433 (575)
. +++++...+ .++.|++|+..+ ++.+..++..+|+++++++=+..+ |...
T Consensus 146 t-lkM~~~I~~~N~r~pe~qrI~vSvd~en~----------req~~~l~am~DyVf~sK~~a~~~-gfks---------- 203 (308)
T KOG2947|consen 146 T-LKMLQRIDAHNTRQPEEQRIRVSVDVENP----------REQLFQLFAMCDYVFVSKDVAKHL-GFKS---------- 203 (308)
T ss_pred H-HHHHHHHHHhhcCCCccceEEEEEEecCc----------HHHHHHHhhcccEEEEEHHHHhhh-ccCC----------
Confidence 2 333333332 346788886421 455678899999999999988876 4442
Q ss_pred cccccCCcHHHHHHHhhc---C--CCEEEEEcCCCcEEEEEcCCce-eEecccCCCCCCcccCccChhHHHHHHHHHHHH
Q 008168 434 RSKFVHYEPEVIAPLWHE---N--LKVLFVTNGTSKVHYYTKEDDG-AVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLT 507 (575)
Q Consensus 434 ~~~~~~~~~e~~~~l~~~---g--~k~VVVT~G~~Ga~v~~~~~~~-~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~ 507 (575)
..+++..+..+ | -..+|+-.+..|+-....++.+ ++++++ ++++|||.||||+|+|||||+++
T Consensus 204 -------~rea~~~l~~r~~~~~pkpv~I~~w~~eGA~~l~adg~yfev~a~~----ppkvVD~lg~~DtF~A~vIyA~l 272 (308)
T KOG2947|consen 204 -------PREACEGLYGRVPKGKPKPVLICPWASEGAGALGADGKYFEVDAFK----PPKVVDTLGAGDTFNAGVIYALL 272 (308)
T ss_pred -------HHHHHHHHHhhcccCCCCcEEEeccccccccccCCCCCEEecCCCC----CccceeeccCCCcchHHHHHHHH
Confidence 23555555432 2 2578888999999888777653 455543 22489999999999999999955
Q ss_pred -cCCCCCCCchhHHHHHHHHHHHHHHHhccccc
Q 008168 508 -VQPHLITDKGYLVRTIKYAIDCGVRDQWSQAR 539 (575)
Q Consensus 508 -~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~ 539 (575)
++ .+|.+|+.||+++|+.++...|-
T Consensus 273 k~~-------r~l~eAvdfg~rvas~Kl~g~Gf 298 (308)
T KOG2947|consen 273 KQG-------RSLAEAVDFGNRVASKKLGGQGF 298 (308)
T ss_pred Hhh-------hhHHHHHHHHHHhhhcccccccc
Confidence 55 89999999999999999988775
No 49
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.94 E-value=4e-25 Score=213.11 Aligned_cols=195 Identities=24% Similarity=0.239 Sum_probs=152.1
Q ss_pred cEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008168 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~ 285 (575)
.|+++|++++|++... +++|.+ +...+.......+||+|.|+|.+|++||.++.++|
T Consensus 1 ~v~~iG~~~~D~~~~~---~~~~~~-------~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~~~~~~------------- 57 (196)
T cd00287 1 RVLVVGSLLVDVILRV---DALPLP-------GGLVRPGDTEERAGGGAANVAVALARLGVSVTLVG------------- 57 (196)
T ss_pred CEEEEccceEEEEEEe---ccCCCC-------CCeEEeceeeecCCCcHHHHHHHHHHCCCcEEEEE-------------
Confidence 4899999999999876 334421 22334577889999999999999999999999999
Q ss_pred HHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHHH
Q 008168 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQ 365 (575)
Q Consensus 286 ~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~ 365 (575)
++++|+++.... .+.+.+
T Consensus 58 ----------------------------------------------------------~~~v~i~~~~~~----~~~~~~ 75 (196)
T cd00287 58 ----------------------------------------------------------ADAVVISGLSPA----PEAVLD 75 (196)
T ss_pred ----------------------------------------------------------ccEEEEecccCc----HHHHHH
Confidence 789999975321 357788
Q ss_pred HHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcHHHH
Q 008168 366 AIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVI 445 (575)
Q Consensus 366 ~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~ 445 (575)
+++.+++.|++++||++.....|.. ..+.++++++|++++|.+|++.|++....+..+ ..+.+
T Consensus 76 ~~~~~~~~~~~v~~D~~~~~~~~~~-----~~~~~~~~~~dvl~~n~~E~~~l~~~~~~~~~~------------~~~~~ 138 (196)
T cd00287 76 ALEEARRRGVPVVLDPGPRAVRLDG-----EELEKLLPGVDILTPNEEEAEALTGRRDLEVKE------------AAEAA 138 (196)
T ss_pred HHHHHHHcCCeEEEeCCcccccccc-----chHHHHHhhCCEECCCHHHHHHHhCCCCCChHH------------HHHHH
Confidence 8999999999999999876655531 126678899999999999999999865432111 12566
Q ss_pred HHHhhcCCCEEEEEcCCCcEEEEE-cCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHH
Q 008168 446 APLWHENLKVLFVTNGTSKVHYYT-KEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLT 507 (575)
Q Consensus 446 ~~l~~~g~k~VVVT~G~~Ga~v~~-~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~ 507 (575)
+.++..+++.||||+|++|+++++ ++...+++. ++++ ++||+||||+|+|||+++|+
T Consensus 139 ~~l~~~g~~~vvvt~G~~g~~~~~~~~~~~~~~~---~~~~--~vdt~GAGD~f~ag~~~~l~ 196 (196)
T cd00287 139 ALLLSKGPKVVIVTLGEKGAIVATRGGTEVHVPA---FPVK--VVDTTGAGDAFLAALAAGLA 196 (196)
T ss_pred HHHHhcCCCEEEEEECCCccEEEecCCceEEcCC---ccCC--cccCCCchHHHHHHHHHHhC
Confidence 778888999999999999999998 543333332 3343 79999999999999999874
No 50
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.73 E-value=1.3e-16 Score=161.35 Aligned_cols=169 Identities=18% Similarity=0.089 Sum_probs=126.9
Q ss_pred ccCcEEEEecccccccchHHHHHHHHHHHhhc--CCEEEEcCCCCC--ccccCchhHHHHHHHhhc-cCeEeecCHHHHH
Q 008168 342 KEAKMFYFSTHSMLERNMKSTTLQAIKISKQF--GGIIFYDVNLPL--PLWQSGEETKMFIQQAWT-LADVIEVTKQELE 416 (575)
Q Consensus 342 ~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~--G~~Vv~D~~~~~--~l~~~~~~~~~~l~~ll~-~aDIl~~N~~Ea~ 416 (575)
..+++|. +|+. .+....+.+.++++.++++ |++|+|||+... .+|....+..+.+.+++. ++|+|++|..|+.
T Consensus 71 ~~~~~v~-~G~l-~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~ 148 (254)
T cd01173 71 LEYDAVL-TGYL-GSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELE 148 (254)
T ss_pred ccCCEEE-EecC-CCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHH
Confidence 4567774 4432 2345678889999999877 899999997533 455433455666777776 9999999999999
Q ss_pred HhhCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCC------cEEEEEcCCceeEecccCCCCCCcccC
Q 008168 417 FLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTS------KVHYYTKEDDGAVLGTEDAPLTPFTSD 490 (575)
Q Consensus 417 ~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~------Ga~v~~~~~~~~v~a~~~~~v~~~vVD 490 (575)
.|+|.+.....+ ..+.++++.+.|++.|+||.|.. |+++++++....++. +.++. ++|
T Consensus 149 ~l~g~~~~~~~~------------~~~~~~~l~~~g~~~Vvit~g~~~~~~~~g~~~~~~~~~~~~~~---~~~~~-~~~ 212 (254)
T cd01173 149 LLTGKKINDLED------------AKAAARALHAKGPKTVVVTSVELADDDRIEMLGSTATEAWLVQR---PKIPF-PAY 212 (254)
T ss_pred HHcCCCcCCHHH------------HHHHHHHHHHhCCCEEEEEeeccCCCCcEEEEEEecCccEEEEe---eccCC-CCC
Confidence 999976432211 23667778888999999999985 788877654433332 23332 489
Q ss_pred ccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhc
Q 008168 491 MSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQW 535 (575)
Q Consensus 491 ttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~ 535 (575)
++||||+|+|||+++|++| +++++|+++|++....++.
T Consensus 213 ~~GaGD~f~a~~~~~l~~g-------~~~~~a~~~A~~~~~~~i~ 250 (254)
T cd01173 213 FNGTGDLFAALLLARLLKG-------KSLAEALEKALNFVHEVLE 250 (254)
T ss_pred cCChHHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 9999999999998876654
No 51
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.70 E-value=6.6e-16 Score=156.17 Aligned_cols=152 Identities=17% Similarity=0.146 Sum_probs=112.8
Q ss_pred HHHHHHHHHHh-hcCCEEEEcCCCCCcccc--CchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccc
Q 008168 361 STTLQAIKISK-QFGGIIFYDVNLPLPLWQ--SGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKF 437 (575)
Q Consensus 361 e~~~~~l~~ak-~~G~~Vv~D~~~~~~l~~--~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~ 437 (575)
+....+++.++ ..+++|+|||+++...|. ..+...+.+..+++++|+|+||..|++.|+|.+..+..+
T Consensus 83 ~~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L~g~~~~~~~~--------- 153 (253)
T PRK12413 83 EIAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELLSGKEIKTLED--------- 153 (253)
T ss_pred HHHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHHhCcCCCCHHH---------
Confidence 34444444444 468899999999888884 234455666678999999999999999999976432211
Q ss_pred cCCcHHHHHHHhhcCCCEEEEEcCCCc-----EEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCC
Q 008168 438 VHYEPEVIAPLWHENLKVLFVTNGTSK-----VHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHL 512 (575)
Q Consensus 438 ~~~~~e~~~~l~~~g~k~VVVT~G~~G-----a~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~ 512 (575)
..++++.+...|++.||||.|..| ..++..++..+++. .++. ++|++||||+|+|||+++|++|
T Consensus 154 ---~~~~a~~l~~~g~~~Vvvt~g~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~GaGDaf~a~~~~~l~~g--- 222 (253)
T PRK12413 154 ---MKEAAKKLYDLGAKAVVIKGGNRLSQKKAIDLFYDGKEFVILE---SPVL--EKNNIGAGCTFASSIASQLVKG--- 222 (253)
T ss_pred ---HHHHHHHHHHcCCCEEEEeCCCCCCCCcceEEEEcCCEEEEEe---eccc--CCCCCChHHHHHHHHHHHHHcC---
Confidence 235667788889999999999864 22333333334433 2333 6899999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcc
Q 008168 513 ITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 513 ~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
+++.+|+++|.++...++..
T Consensus 223 ----~~l~ea~~~A~~~~~~~l~~ 242 (253)
T PRK12413 223 ----KSPLEAVKNSKDFVYQAIQQ 242 (253)
T ss_pred ----CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999998777665
No 52
>PRK05756 pyridoxamine kinase; Validated
Probab=99.70 E-value=4.5e-16 Score=160.46 Aligned_cols=170 Identities=18% Similarity=0.114 Sum_probs=124.4
Q ss_pred hccCcEEEEecccccccchHHHHHHHHHHHhhcC--CEEEEcCCCCCc---cccCchhHHHHHHHhhccCeEeecCHHHH
Q 008168 341 LKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFG--GIIFYDVNLPLP---LWQSGEETKMFIQQAWTLADVIEVTKQEL 415 (575)
Q Consensus 341 l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G--~~Vv~D~~~~~~---l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea 415 (575)
+..++++ ++|+. .+....+.+.++++.++..+ +.+++||+.... +|...+........+++++|+|+||..|+
T Consensus 72 l~~~~~v-~~G~l-~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea 149 (286)
T PRK05756 72 LGECDAV-LSGYL-GSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFEL 149 (286)
T ss_pred cccCCEE-EECCC-CCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHH
Confidence 3467866 55542 23346778899998888765 568999987652 45332333344456899999999999999
Q ss_pred HHhhCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCC--------cEEEEEcCCceeEecccCCCCCCc
Q 008168 416 EFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTS--------KVHYYTKEDDGAVLGTEDAPLTPF 487 (575)
Q Consensus 416 ~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~--------Ga~v~~~~~~~~v~a~~~~~v~~~ 487 (575)
+.|+|....+..+ ..++++++...|++.||||.|.. |++++++++...++. ++++
T Consensus 150 ~~L~g~~~~~~~~------------~~~~~~~l~~~g~~~Vvvt~g~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~-- 212 (286)
T PRK05756 150 EWLSGRPVETLED------------AVAAARALIARGPKIVLVTSLARAGYPADRFEMLLVTADGAWHISR---PLVD-- 212 (286)
T ss_pred HHHhCCCcCCHHH------------HHHHHHHHHHhCCCEEEEeccccCCCCCCcEEEEEEECCceEEEec---CccC--
Confidence 9999865432211 23566778788999999999876 477777654333332 3343
Q ss_pred c-cCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcc
Q 008168 488 T-SDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 488 v-VDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
+ +|++||||+|+|||+++|++| +++++|+++|++....++..
T Consensus 213 ~~v~~~GaGD~f~a~~~a~l~~g-------~~~~~al~~A~~~~~~~i~~ 255 (286)
T PRK05756 213 FMRQPVGVGDLTSALFLARLLQG-------GSLEEALEHTTAAVYEVMAR 255 (286)
T ss_pred CCCCCCChHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHH
Confidence 5 699999999999999999999 99999999999998877764
No 53
>PRK07105 pyridoxamine kinase; Validated
Probab=99.67 E-value=1.2e-15 Score=157.17 Aligned_cols=174 Identities=16% Similarity=0.110 Sum_probs=125.1
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCC--ccccC-chhHHHHHHHhhccCeEeecCHHHHHHhh
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPL--PLWQS-GEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~--~l~~~-~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~ 419 (575)
.++.|+++.+. ++...+.+.++++.+++.+++|+|||+... .+|.. .++..+.+.++++++|+|+||..|++.|+
T Consensus 75 ~~~aik~G~l~--~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~ 152 (284)
T PRK07105 75 KFDAIYSGYLG--SPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNLTEACLLL 152 (284)
T ss_pred ccCEEEECcCC--CHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCHHHHHHHc
Confidence 57888876432 334456667777776777899999998643 34532 23455667789999999999999999999
Q ss_pred CCCCCC-cccccccccccccCCcHHHHHHHhhcCCCEEEEEc-----CCCcEEEEEcCC-ceeEecccCCCCCCcccCcc
Q 008168 420 GIKPTE-EFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTN-----GTSKVHYYTKED-DGAVLGTEDAPLTPFTSDMS 492 (575)
Q Consensus 420 g~~~~~-~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~-----G~~Ga~v~~~~~-~~~v~a~~~~~v~~~vVDtt 492 (575)
|.+... ..+.. . ..++++++.+.|++.||||. |..|+++++.+. ..+.... +.+ .+|++
T Consensus 153 g~~~~~~~~~~~-~--------~~~~a~~l~~~g~~~Vvvt~~~~~~g~~g~~~~~~~~~~~~~~~~--~~~---~~~~~ 218 (284)
T PRK07105 153 DKPYLEKSYSEE-E--------IKQLLRKLADLGPKIVIITSVPFEDGKIGVAYYDRATDRFWKVFC--KYI---PAHYP 218 (284)
T ss_pred CCCcCcCCCCHH-H--------HHHHHHHHHhcCCCEEEEcCeeeCCCeEEEEEEeCCCCeEEEEee--ccc---CCCcC
Confidence 865321 00000 0 23566777778999999999 677888887543 2222221 222 47999
Q ss_pred ChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhccccc
Q 008168 493 ASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQAR 539 (575)
Q Consensus 493 GAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~ 539 (575)
||||+|+|||+++|++| +++.+|+++|++++...+..-..
T Consensus 219 GaGD~f~aa~~~~l~~g-------~~l~~av~~A~~~~~~~i~~~~~ 258 (284)
T PRK07105 219 GTGDIFTSVITGSLLQG-------DSLPIALDRAVQFIEKGIRATLG 258 (284)
T ss_pred ChhHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999 99999999999999888875433
No 54
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.67 E-value=1.3e-15 Score=157.02 Aligned_cols=165 Identities=16% Similarity=0.123 Sum_probs=116.8
Q ss_pred hccCcEEEEecccccccchHHHHHHHHHHHhhcC--CEEEEcCCCCCc---cccCchhHHHHH-HHhhccCeEeecCHHH
Q 008168 341 LKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFG--GIIFYDVNLPLP---LWQSGEETKMFI-QQAWTLADVIEVTKQE 414 (575)
Q Consensus 341 l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G--~~Vv~D~~~~~~---l~~~~~~~~~~l-~~ll~~aDIl~~N~~E 414 (575)
+..+++++++.++ +....+.+.++++.+++.| +.+++||+.... +|.. ....+.+ ..+++++|+|++|..|
T Consensus 72 ~~~~d~v~~G~l~--~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~-~~~~~~~~~~ll~~adii~pN~~E 148 (286)
T TIGR00687 72 LNQCDAVLSGYLG--SAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVA-PDLLEVYREKAIPVADIITPNQFE 148 (286)
T ss_pred cccCCEEEECCCC--CHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeC-hhHHHHHHHhccccccEecCCHHH
Confidence 3578887444322 3345678888999888765 678999975432 2322 2333334 4688999999999999
Q ss_pred HHHhhCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEE-cCCCcE--------EEEEcCCceeEecccCCCCC
Q 008168 415 LEFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVT-NGTSKV--------HYYTKEDDGAVLGTEDAPLT 485 (575)
Q Consensus 415 a~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT-~G~~Ga--------~v~~~~~~~~v~a~~~~~v~ 485 (575)
++.|+|.+..+..+ ..++++.+++.|++.|||| .|..|+ +++++++...++. ++++
T Consensus 149 a~~L~g~~~~~~~~------------~~~~~~~l~~~g~~~Viit~~g~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~ 213 (286)
T TIGR00687 149 LELLTGRKINTVEE------------ALAAADALIAMGPDIVLVTHLARAGSQRDRDFEGLVVTQEGRWHISR---PLAV 213 (286)
T ss_pred HHHHhCCCcCCHHH------------HHHHHHHHHHhCCCEEEEEeccccCCCCCcceeEEEEcCCceEEEec---cCcC
Confidence 99999975432211 1356677878899999999 788775 3445443333322 2232
Q ss_pred CcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHH
Q 008168 486 PFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGV 531 (575)
Q Consensus 486 ~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA 531 (575)
. ++|++||||+|+|||+++|++| +++++|+++|+++..
T Consensus 214 ~-~~d~~GaGD~f~A~~l~~l~~g-------~~~~~al~~A~~~v~ 251 (286)
T TIGR00687 214 F-MRQPVGTGDLIAALLLATLLHG-------NSLKEALEKTVSAVY 251 (286)
T ss_pred C-CCCCCChHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHH
Confidence 1 5899999999999999999999 999999999999933
No 55
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.64 E-value=6.8e-15 Score=149.08 Aligned_cols=164 Identities=16% Similarity=0.108 Sum_probs=119.8
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCC-EEEEcCCCCC----ccccCchhHHHHHHHhhccCeEeecCHHHHHH
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGG-IIFYDVNLPL----PLWQSGEETKMFIQQAWTLADVIEVTKQELEF 417 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~-~Vv~D~~~~~----~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~ 417 (575)
..+.|.++-+ . ..+.+..+++.+++++. +|+|||.... .++. .+........+++++|+|+||..|++.
T Consensus 67 ~~~aikiG~l---~--~~~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~~-~~~~~~~~~~ll~~~dvitpN~~Ea~~ 140 (254)
T TIGR00097 67 PVDAAKTGML---A--SAEIVEAVARKLREYPVRPLVVDPVMVAKSGAPLLE-EEAIEALRKRLLPLATLITPNLPEAEA 140 (254)
T ss_pred CCCEEEECCc---C--CHHHHHHHHHHHHhcCCCcEEECCccccCCCCcCCC-HHHHHHHHHhccccccEecCCHHHHHH
Confidence 3577777632 1 34677778888888888 6999997543 2332 111123344688999999999999999
Q ss_pred hhCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCC----CcE-EEEEcCCceeEecccCCCCCCcccCcc
Q 008168 418 LCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGT----SKV-HYYTKEDDGAVLGTEDAPLTPFTSDMS 492 (575)
Q Consensus 418 L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~----~Ga-~v~~~~~~~~v~a~~~~~v~~~vVDtt 492 (575)
|+|.......+ ..+.++.|...|++.|+||.|. +|+ ++++.+...+++. ++++ ++|++
T Consensus 141 L~g~~~~~~~~------------~~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~d~~ 203 (254)
T TIGR00097 141 LLGTKIRTEQD------------MIKAAKKLRELGPKAVLIKGGHLEGDQAVDVLFDGGEIHILKA---PRIE--TKNTH 203 (254)
T ss_pred HhCCCCCCHHH------------HHHHHHHHHhcCCCEEEEeCCCCCCCceeEEEEECCeEEEEEe---cccC--CCCCC
Confidence 99865432111 2366777888899999999997 344 5566554333432 4454 78999
Q ss_pred ChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcc
Q 008168 493 ASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 493 GAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
||||+|.|+|+++|++| +++.+|+++|++++..++..
T Consensus 204 GaGD~f~aalaa~la~g-------~~l~eA~~~A~~~~~~~i~~ 240 (254)
T TIGR00097 204 GTGCTLSAAIAANLAKG-------LSLKEAVKEAKEFVTGAIRY 240 (254)
T ss_pred ChHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999988865
No 56
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.64 E-value=5.5e-15 Score=152.08 Aligned_cols=167 Identities=16% Similarity=0.086 Sum_probs=120.8
Q ss_pred hccCcEEEEecccccccchHHHHHHHHHHHhh--cCCEEEEcCCCCC---ccccCchhHHHHH-HHhhccCeEeecCHHH
Q 008168 341 LKEAKMFYFSTHSMLERNMKSTTLQAIKISKQ--FGGIIFYDVNLPL---PLWQSGEETKMFI-QQAWTLADVIEVTKQE 414 (575)
Q Consensus 341 l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~--~G~~Vv~D~~~~~---~l~~~~~~~~~~l-~~ll~~aDIl~~N~~E 414 (575)
+..+++|+++.+. +....+.+.++++..+. .+.++++||.... .+|.+.+ ..+.+ ..+++++|+|+||..|
T Consensus 86 l~~~d~i~~G~l~--s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~-~~~~~~~~Ll~~advitPN~~E 162 (281)
T PRK08176 86 LRQLRAVTTGYMG--SASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPD-LPEAYRQHLLPLAQGLTPNIFE 162 (281)
T ss_pred cccCCEEEECCCC--CHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECcc-HHHHHHHHhHhhcCEeCCCHHH
Confidence 3478988887542 34455666777766554 4788999997543 2453322 23334 4688999999999999
Q ss_pred HHHhhCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCc-------EEEEEcCCceeEecccCCCCCCc
Q 008168 415 LEFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSK-------VHYYTKEDDGAVLGTEDAPLTPF 487 (575)
Q Consensus 415 a~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~G-------a~v~~~~~~~~v~a~~~~~v~~~ 487 (575)
++.|+|.+..+..+ ..+.++++++.|++.||||.|..| +++++++.. ++... +..
T Consensus 163 a~~L~g~~~~~~~~------------~~~~~~~l~~~g~~~VvIT~g~~g~~~~~~~~~~~~~~~~-~~~~~---~~~-- 224 (281)
T PRK08176 163 LEILTGKPCRTLDS------------AIAAAKSLLSDTLKWVVITSAAGNEENQEMQVVVVTADSV-NVISH---PRV-- 224 (281)
T ss_pred HHHHhCCCCCCHHH------------HHHHHHHHHhcCCCEEEEeeccCCCCCCcEEEEEEeCCce-EEEec---Ccc--
Confidence 99999965432111 235677888889999999999988 566766542 23222 222
Q ss_pred ccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhc
Q 008168 488 TSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQW 535 (575)
Q Consensus 488 vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~ 535 (575)
.+|++||||+|+|+|+++|++| +++.+|+++|+..-..++.
T Consensus 225 ~~~~~GaGD~faa~~~a~l~~g-------~~l~~Av~~A~~~v~~~i~ 265 (281)
T PRK08176 225 DTDLKGTGDLFCAELVSGLLKG-------KALTDAAHRAGLRVLEVMR 265 (281)
T ss_pred CCCCCChhHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999 9999999999988776654
No 57
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.64 E-value=9.1e-15 Score=146.56 Aligned_cols=164 Identities=13% Similarity=0.071 Sum_probs=116.9
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhc-CCEEEEcCCCCCcccc---CchhHHHHHHHhhccCeEeecCHHHHHHh
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQF-GGIIFYDVNLPLPLWQ---SGEETKMFIQQAWTLADVIEVTKQELEFL 418 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~-G~~Vv~D~~~~~~l~~---~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L 418 (575)
.+++|.++.+ . ..+.+..+++.+++. +++++|||+.+...|. ..+........+++++|+|+||..|++.|
T Consensus 68 ~~~~i~~G~l---~--~~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L 142 (242)
T cd01169 68 PVDAIKIGML---G--SAEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELL 142 (242)
T ss_pred CCCEEEECCC---C--CHHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHH
Confidence 5788887532 1 245556666666665 8899999986543321 11112234456779999999999999999
Q ss_pred hCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCc-----EEEEEcCCceeEecccCCCCCCcccCccC
Q 008168 419 CGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSK-----VHYYTKEDDGAVLGTEDAPLTPFTSDMSA 493 (575)
Q Consensus 419 ~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~G-----a~v~~~~~~~~v~a~~~~~v~~~vVDttG 493 (575)
+|.......+ ..++++.+...|++.||||.|..| .++++++...+++. ++++ ++|++|
T Consensus 143 ~g~~~~~~~~------------~~~~~~~l~~~g~~~Vvit~g~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~G 205 (242)
T cd01169 143 TGLEIATEED------------MMKAAKALLALGAKAVLIKGGHLPGDEAVDVLYDGGGFFEFES---PRID--TKNTHG 205 (242)
T ss_pred hCCCCCCHHH------------HHHHHHHHHhcCCCEEEEecCCCCCCceeEEEEECCcEEEEec---ceeC--CCCCCC
Confidence 9975432111 135567777889999999999885 35666654444443 3443 689999
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhc
Q 008168 494 SGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQW 535 (575)
Q Consensus 494 AGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~ 535 (575)
|||+|+|+|+++|++| +++.+|+++|++.-..++.
T Consensus 206 aGD~f~a~l~a~l~~g-------~~~~~A~~~A~~~~~~~i~ 240 (242)
T cd01169 206 TGCTLSSAIAANLAKG-------LSLEEAVREAKEYVTQAIR 240 (242)
T ss_pred hHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999998766553
No 58
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.63 E-value=8.1e-15 Score=149.81 Aligned_cols=164 Identities=13% Similarity=0.002 Sum_probs=118.0
Q ss_pred CcEEEEecccccccchHHHHHHHHHHHhhcCCE-EEEcCCCCCcccc---CchhHHHHHHHhhccCeEeecCHHHHHHhh
Q 008168 344 AKMFYFSTHSMLERNMKSTTLQAIKISKQFGGI-IFYDVNLPLPLWQ---SGEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 344 ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~-Vv~D~~~~~~l~~---~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~ 419 (575)
.++|.++-+ .+.+.+..+++.+++.+.+ |++||........ .......+...+++++|+|+||..|++.|+
T Consensus 73 ~~~ikiG~l-----~~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~ 147 (268)
T PRK12412 73 VDALKTGML-----GSVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQLS 147 (268)
T ss_pred CCEEEECCC-----CCHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHHHh
Confidence 788887643 1356677777778877776 9999975322110 111122345568899999999999999999
Q ss_pred CCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcE------EEEEcCCceeEecccCCCCCCcccCccC
Q 008168 420 GIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKV------HYYTKEDDGAVLGTEDAPLTPFTSDMSA 493 (575)
Q Consensus 420 g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga------~v~~~~~~~~v~a~~~~~v~~~vVDttG 493 (575)
|.+..+..+ ..++++++.+.|++.||||.|..|. +++..+....++. ++++ ++|++|
T Consensus 148 g~~~~~~~~------------~~~aa~~l~~~g~~~ViIt~G~~g~~~~~~~~~~~~~~~~~~~~---~~v~--~~~t~G 210 (268)
T PRK12412 148 GVKINSLED------------MKEAAKKIHALGAKYVLIKGGSKLGTETAIDVLYDGETFDLLES---EKID--TTNTHG 210 (268)
T ss_pred CcCCCCHHH------------HHHHHHHHHhcCCCEEEEeccCCCCCCceEEEEEeCCEEEEEEe---CccC--CCCCCc
Confidence 875432211 2366777888899999999998753 3444332223332 4454 789999
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcc
Q 008168 494 SGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 494 AGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
|||+|+|+|+++|++| +++++|+++|.++...++..
T Consensus 211 aGD~f~aa~aa~l~~g-------~~l~eA~~~A~~~~~~~i~~ 246 (268)
T PRK12412 211 AGCTYSAAITAELAKG-------KPVKEAVKTAKEFITAAIRY 246 (268)
T ss_pred hHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999877764
No 59
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.63 E-value=1.1e-14 Score=148.49 Aligned_cols=165 Identities=15% Similarity=0.155 Sum_probs=118.5
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCC-EEEEcCCCCC----ccccCchhHHHHHHHhhccCeEeecCHHHHHH
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGG-IIFYDVNLPL----PLWQSGEETKMFIQQAWTLADVIEVTKQELEF 417 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~-~Vv~D~~~~~----~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~ 417 (575)
..+.+.++.+. ..+.+..+++.+++.+. +|++||+... .+|. .+........+++++|+|+||..|++.
T Consensus 73 ~~~ai~iG~l~-----~~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~~-~~~~~~~~~~ll~~~dvitpN~~Ea~~ 146 (266)
T PRK06427 73 RIDAVKIGMLA-----SAEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLLA-DDAVAALRERLLPLATLITPNLPEAEA 146 (266)
T ss_pred CCCEEEECCcC-----CHHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCCC-HHHHHHHHHhhhCcCeEEcCCHHHHHH
Confidence 46777776421 34566667777777775 7999997543 2332 112223334689999999999999999
Q ss_pred hhCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCC--CcE----EEEEcCCceeEecccCCCCCCcccCc
Q 008168 418 LCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGT--SKV----HYYTKEDDGAVLGTEDAPLTPFTSDM 491 (575)
Q Consensus 418 L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~--~Ga----~v~~~~~~~~v~a~~~~~v~~~vVDt 491 (575)
|+|.+..+..+. ..++++.+.+.|++.||||.|. +|. ++++++....++. ++++ ++|+
T Consensus 147 L~g~~~~~~~~~-----------~~~~a~~l~~~g~~~Vvit~g~~~~g~~~~~~~~~~~~~~~~~~---~~~~--~~~~ 210 (266)
T PRK06427 147 LTGLPIADTEDE-----------MKAAARALHALGCKAVLIKGGHLLDGEESVDWLFDGEGEERFSA---PRIP--TKNT 210 (266)
T ss_pred HhCCCCCCcHHH-----------HHHHHHHHHhcCCCEEEEcCCCCCCCCceeEEEEeCCcEEEEEe---eeEC--CCCC
Confidence 998653321110 1356777878899999999998 553 5666554333332 3344 6799
Q ss_pred cChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcc
Q 008168 492 SASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 492 tGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
+||||+|+|+|+++|++| +++.+|+++|++++..++.+
T Consensus 211 ~GaGD~f~a~l~~~l~~g-------~~l~~A~~~A~~~~~~~i~~ 248 (266)
T PRK06427 211 HGTGCTLSAAIAAELAKG-------ASLLDAVQTAKDYVTRAIRH 248 (266)
T ss_pred CChHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999888875
No 60
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.63 E-value=4.9e-15 Score=161.95 Aligned_cols=152 Identities=17% Similarity=0.121 Sum_probs=114.8
Q ss_pred hHHHHHHHHHHHhhcCCEEEEcCCCCC----ccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCccccccccc
Q 008168 359 MKSTTLQAIKISKQFGGIIFYDVNLPL----PLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNAR 434 (575)
Q Consensus 359 ~~e~~~~~l~~ak~~G~~Vv~D~~~~~----~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~ 434 (575)
..+.+..+++.++++|++|+|||+++. ++|. .+.....+..+++++|+|+||..|++.|+|.+..+..+
T Consensus 82 ~~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~~-~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~i~~~~d------ 154 (448)
T PRK08573 82 NREIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLLR-EDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIRSVED------ 154 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEcCccccCCCCcCCC-HHHHHHHHHhhhccCEEEcCCHHHHHHHhCCCCCCHHH------
Confidence 457888899999999999999998653 4553 12223344678899999999999999999975432211
Q ss_pred ccccCCcHHHHHHHhh-cCCCEEEEEcCC----CcE-EEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHc
Q 008168 435 SKFVHYEPEVIAPLWH-ENLKVLFVTNGT----SKV-HYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTV 508 (575)
Q Consensus 435 ~~~~~~~~e~~~~l~~-~g~k~VVVT~G~----~Ga-~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~ 508 (575)
..++++.|.. .|++.||||.|. .|+ +++..+...+++. ++++ ++|++||||+|+|+|+++|++
T Consensus 155 ------~~~aa~~L~~~~G~~~VvVt~G~~~g~~~~~~~~~~~~~~~~~~---~~v~--~~dt~GAGDaFsAa~aa~l~~ 223 (448)
T PRK08573 155 ------ARKAAKYIVEELGAEAVVVKGGHLEGEEAVDVLYHNGTFREFRA---PRVE--SGCTHGTGCSFSAAIAAGLAK 223 (448)
T ss_pred ------HHHHHHHHHHHcCCCEEEEecccCCCCceeEEEEECCeEEEEEe---cCcC--CCCCCChHHHHHHHHHHHHHc
Confidence 1355666764 699999999985 354 4444443223332 4454 799999999999999999999
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHhc
Q 008168 509 QPHLITDKGYLVRTIKYAIDCGVRDQW 535 (575)
Q Consensus 509 g~~~~~d~~sl~eAl~~A~aaAA~~v~ 535 (575)
| +++.+|+++|+.++..++.
T Consensus 224 G-------~~l~eAl~~A~~~~~~al~ 243 (448)
T PRK08573 224 G-------LDPEEAIKTAKKFITMAIK 243 (448)
T ss_pred C-------CCHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999998888
No 61
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=99.55 E-value=5.3e-14 Score=146.77 Aligned_cols=251 Identities=15% Similarity=0.136 Sum_probs=164.5
Q ss_pred EEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHH
Q 008168 207 VCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYY 286 (575)
Q Consensus 207 VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~~ 286 (575)
-+|+|...+|+......... .+..+++....+..||.|.|.|.++++||.++.||+.||+|.
T Consensus 343 Pv~vGa~i~D~~~k~d~d~K----------~dG~sy~~~~~Qa~GGVarN~A~a~~~lg~d~~liSavG~d~-------- 404 (614)
T KOG3009|consen 343 PVSVGATIVDFEAKTDEDVK----------DDGGSYNGQVVQAMGGVARNHADALARLGCDSVLISAVGDDN-------- 404 (614)
T ss_pred ceeecceEEEeEEeeccccc----------ccCCcccchhhhhccchhhhHHHHHHHhcCCeeEEEEeccCC--------
Confidence 48999999999987743211 123335577788999999999999999999999999999992
Q ss_pred HHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHHHH
Q 008168 287 MNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQA 366 (575)
Q Consensus 287 L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~~ 366 (575)
+++ + +.... ...-+...+++ +++++++++. .....+..+
T Consensus 405 ----------------------------n~~--~-~~~~~----~~~~e~~~dl~-~a~~I~~DsN-----iS~~~Ma~i 443 (614)
T KOG3009|consen 405 ----------------------------NGH--F-FRQNS----HKIVESNEDLL-SADFILLDSN-----ISVPVMARI 443 (614)
T ss_pred ----------------------------cch--h-hhhhh----hhhhhhhhhhh-cCCEEEEcCC-----CCHHHHHHH
Confidence 111 0 00000 01111222344 7899999863 445677777
Q ss_pred HHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHh-hccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcHHHH
Q 008168 367 IKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQA-WTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVI 445 (575)
Q Consensus 367 l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~l-l~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~ 445 (575)
++ ++.+..+|+|.|...... ...+.-+ ...++.+.||..|+........... .+..+..... -.+.+
T Consensus 444 l~-ak~~k~~V~fEPTd~~k~-------~K~fk~l~v~~i~~i~PN~~Ell~a~k~~~v~~---nps~~q~~~~-~~~~~ 511 (614)
T KOG3009|consen 444 LE-AKKHKKQVWFEPTDIDKV-------KKVFKTLLVGAITAISPNANELLKAAKLCHVSV---NPSVIQTADG-VLELI 511 (614)
T ss_pred HH-hhhccCceEecCCCchhh-------hhhhhhcceeeEEeeCCCHHHHHHHhhcCceee---ChhhhccchH-HHHHH
Confidence 77 899999999998643321 2223222 2358999999999843322111100 0001111100 01222
Q ss_pred H---HHhhcCCCEEEEEcCCCcEEEEEcCCc--eeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHH
Q 008168 446 A---PLWHENLKVLFVTNGTSKVHYYTKEDD--GAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLV 520 (575)
Q Consensus 446 ~---~l~~~g~k~VVVT~G~~Ga~v~~~~~~--~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~ 520 (575)
. ........++|+|+-.+|+++...+.. .++..++.+++..++++..||||+|++||+++++.+ .++.
T Consensus 512 ~~~~~k~~~~~s~~I~tl~~~G~l~~yr~k~g~l~~~s~~p~~~~~n~vsvsgaGdsf~~g~i~~l~~~-------~~v~ 584 (614)
T KOG3009|consen 512 EKEKTKLLLNTSIFIVTLANKGSLVVYRNKLGQLEFQSLPPPLQMNNVVSVSGAGDSFNSGVIAGLAHN-------KTVV 584 (614)
T ss_pred HHHHHHhhcccceEEEEeccCceEEEecCCCCCcccccCCCcccccceeEeccCCcccccceeehhhcC-------cchH
Confidence 2 222346789999999999887665533 345555555555568999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHhc
Q 008168 521 RTIKYAIDCGVRDQW 535 (575)
Q Consensus 521 eAl~~A~aaAA~~v~ 535 (575)
+++.-+..|+..-++
T Consensus 585 es~~gg~~~~ralls 599 (614)
T KOG3009|consen 585 ESLQGGQECARALLS 599 (614)
T ss_pred hhccccHHHHHHHHh
Confidence 999999777765444
No 62
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.54 E-value=2e-13 Score=139.68 Aligned_cols=165 Identities=14% Similarity=0.007 Sum_probs=114.1
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcC-CEEEEcCCCCCccccC--chhHHHHH-HHhhccCeEeecCHHHHHHh
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFG-GIIFYDVNLPLPLWQS--GEETKMFI-QQAWTLADVIEVTKQELEFL 418 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G-~~Vv~D~~~~~~l~~~--~~~~~~~l-~~ll~~aDIl~~N~~Ea~~L 418 (575)
..+.|.++-+. ..+.+..+++.+++.+ .+|++||.....-... ..+..+.+ ..+++++|+|+||..|++.|
T Consensus 74 ~~~aikiG~l~-----s~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L 148 (270)
T PRK12616 74 GVDAMKTGMLP-----TVDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQL 148 (270)
T ss_pred CCCEEEECCCC-----CHHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHH
Confidence 35777776321 3455566666677666 3699999864321100 11222333 45888999999999999999
Q ss_pred hCC-CCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcE------EEEEcCCceeEecccCCCCCCcccCc
Q 008168 419 CGI-KPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKV------HYYTKEDDGAVLGTEDAPLTPFTSDM 491 (575)
Q Consensus 419 ~g~-~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga------~v~~~~~~~~v~a~~~~~v~~~vVDt 491 (575)
+|. ...+..+ ..++++.+.+.|++.||||.|..|. +++.++....++. +.++ ++|+
T Consensus 149 ~g~~~~~~~~~------------~~~aa~~l~~~G~~~VvVt~G~~g~~~~~~~~~~~~~~~~~~~~---~~~~--~~~t 211 (270)
T PRK12616 149 SGMGEIKTVEQ------------MKEAAKKIHELGAQYVVITGGGKLKHEKAVDVLYDGETAEVLES---EMID--TPYT 211 (270)
T ss_pred cCCCCCCCHHH------------HHHHHHHHHHcCCCEEEEeCCCCCcCCceEEEEEECCeEEEEEe---eeeC--CCCC
Confidence 986 2222111 2366777888899999999998762 4555543233332 3444 6799
Q ss_pred cChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcc
Q 008168 492 SASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 492 tGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
+||||+|.|+|+++|++| .++++|+++|.++...++..
T Consensus 212 ~GaGD~fsaalaa~l~~g-------~~l~~Av~~A~~~~~~~i~~ 249 (270)
T PRK12616 212 HGAGCTFSAAVTAELAKG-------SEVKEAIYAAKEFITAAIKE 249 (270)
T ss_pred CcHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999998877764
No 63
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.41 E-value=8.4e-12 Score=129.45 Aligned_cols=167 Identities=14% Similarity=0.118 Sum_probs=109.3
Q ss_pred CcEEEEecccccccchHHHHHHHHHHHhhcC--CEEEEcCCC--CCccccCchhHHHHHHHhhccCeEeecCHHHHHHhh
Q 008168 344 AKMFYFSTHSMLERNMKSTTLQAIKISKQFG--GIIFYDVNL--PLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 344 ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G--~~Vv~D~~~--~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~ 419 (575)
.++|.++.++ +....+.+.++++.+++.+ ++|++||+. +..+|. .+...+.+..+++++|++++|..|++.|+
T Consensus 78 ~~~v~sG~l~--~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~-~~~~~~~~~~ll~~~dii~pN~~E~~~L~ 154 (296)
T PTZ00344 78 YTYVLTGYIN--SADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYV-KEEVVDAYRELIPYADVITPNQFEASLLS 154 (296)
T ss_pred CCEEEECCCC--CHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEe-CHHHHHHHHHHhhhCCEEeCCHHHHHHHh
Confidence 3545444332 3334555566666556555 589999865 344564 45666777789999999999999999999
Q ss_pred CCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEE---cCCCc----EEEEEc--CCc-eeEecccCCCCCCccc
Q 008168 420 GIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVT---NGTSK----VHYYTK--EDD-GAVLGTEDAPLTPFTS 489 (575)
Q Consensus 420 g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT---~G~~G----a~v~~~--~~~-~~v~a~~~~~v~~~vV 489 (575)
|.+..+..+ ..+.++.+.+.|++.|||| +|..| +++... ++. ..+..+..+.+ .+
T Consensus 155 g~~~~~~~~------------~~~~~~~l~~~g~~~VvVTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~ 219 (296)
T PTZ00344 155 GVEVKDLSD------------ALEAIDWFHEQGIPVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGKVPYI---EG 219 (296)
T ss_pred CCCCCCHHH------------HHHHHHHHHHhCCCEEEEEeecCCCCCCcEEEEEEeccccCCCceeEEEecccc---CC
Confidence 975332111 1356677777899999999 66566 444432 111 11111222333 25
Q ss_pred CccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcc
Q 008168 490 DMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 490 DttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
+++||||+|+|+|++.+..| ++.+|+++|.+.-..++..
T Consensus 220 ~~~GaGD~f~A~~~a~l~~g--------~~~~a~~~A~a~~~~~i~~ 258 (296)
T PTZ00344 220 RYTGTGDLFAALLLAFSHQH--------PMDLAVGKAMGVLQDIIKA 258 (296)
T ss_pred CCCCchHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHHHHH
Confidence 77999999999999666654 7999999998887765553
No 64
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.35 E-value=4.2e-11 Score=133.04 Aligned_cols=164 Identities=13% Similarity=0.085 Sum_probs=115.1
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCE-EEEcCCCCCc---cccCchhHHHHH-HHhhccCeEeecCHHHHHH
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGI-IFYDVNLPLP---LWQSGEETKMFI-QQAWTLADVIEVTKQELEF 417 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~-Vv~D~~~~~~---l~~~~~~~~~~l-~~ll~~aDIl~~N~~Ea~~ 417 (575)
..+.|.++.+. ..+.+..+++.+++.+.+ |++||..... .+. ..+..+.+ ..+++++|+|+||..|++.
T Consensus 78 ~~~aik~G~l~-----~~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~-~~~~~~~l~~~Ll~~adiitPN~~Ea~~ 151 (502)
T PLN02898 78 PVDVVKTGMLP-----SAEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLA-GPSILSALREELLPLATIVTPNVKEASA 151 (502)
T ss_pred CCCEEEECCcC-----CHHHHHHHHHHHHhCCCCCEEEccccccCCCCccC-CHHHHHHHHHhhhccCeEEcCCHHHHHH
Confidence 35667665321 256667777777777775 9999964221 111 12223334 4688999999999999999
Q ss_pred hhCCCCCC-cccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCc------EEEEEcCCceeEecccCCCCCCcccC
Q 008168 418 LCGIKPTE-EFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSK------VHYYTKEDDGAVLGTEDAPLTPFTSD 490 (575)
Q Consensus 418 L~g~~~~~-~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~G------a~v~~~~~~~~v~a~~~~~v~~~vVD 490 (575)
|+|..... ..+ ..+.++.+.+.|++.||||.|..+ .++++++...+++ .++++ .+|
T Consensus 152 L~g~~~~~~~~~------------~~~~a~~l~~~G~~~VvItgg~~~~~~~~~~~l~~~~~~~~~~---~~~i~--~~~ 214 (502)
T PLN02898 152 LLGGDPLETVAD------------MRSAAKELHKLGPRYVLVKGGHLPDSLDAVDVLYDGTEFHELR---SSRIK--TRN 214 (502)
T ss_pred HhCCCCCCCHHH------------HHHHHHHHHhcCCCEEEEcCCCCCCCCcceEEEEcCCeEEEEe---cceeC--CCC
Confidence 99853221 111 236677788889999999999753 3555543222232 23444 689
Q ss_pred ccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcc
Q 008168 491 MSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 491 ttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
++|+||+|.|+|+++|++| +++.+|+++|+.+...++..
T Consensus 215 t~GaGD~fsaaiaa~l~~G-------~~l~eAv~~A~~~v~~ai~~ 253 (502)
T PLN02898 215 THGTGCTLASCIAAELAKG-------SDMLSAVKVAKRYVETALEY 253 (502)
T ss_pred CCchhhhHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 99999999999999988875
No 65
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.34 E-value=2.3e-11 Score=135.18 Aligned_cols=151 Identities=15% Similarity=0.117 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCC----CccccCc--hhHHHHH-HHhhccCeEeecCHHHHHHhhCCC-CCCcccccc
Q 008168 360 KSTTLQAIKISKQFGGIIFYDVNLP----LPLWQSG--EETKMFI-QQAWTLADVIEVTKQELEFLCGIK-PTEEFDTKN 431 (575)
Q Consensus 360 ~e~~~~~l~~ak~~G~~Vv~D~~~~----~~l~~~~--~~~~~~l-~~ll~~aDIl~~N~~Ea~~L~g~~-~~~~~d~~~ 431 (575)
.+.+..+++.++ +.+|++||... ..++... ....+.+ ..+++++|||+||..|++.|+|.. .....+
T Consensus 311 ~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~g~~~~~~~~~--- 385 (504)
T PTZ00347 311 ARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNIPEAERILGRKEITGVYE--- 385 (504)
T ss_pred HHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCHHHHHHHhCCCCCCCHHH---
Confidence 455555666554 67899999763 2333210 1112222 368899999999999999999963 221111
Q ss_pred cccccccCCcHHHHHHHhhcCCCEEEEEcCCCc-------EEEEEcCC-c-eeEecccCCCCCCcccCccChhHHHHHHH
Q 008168 432 NARSKFVHYEPEVIAPLWHENLKVLFVTNGTSK-------VHYYTKED-D-GAVLGTEDAPLTPFTSDMSASGDGIVAGI 502 (575)
Q Consensus 432 ~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~G-------a~v~~~~~-~-~~v~a~~~~~v~~~vVDttGAGDaF~AGf 502 (575)
..++++.+.+.|++.||||.|..| .+++..+. . ..++. ++++ ++|++||||+|+|+|
T Consensus 386 ---------~~~aa~~l~~~G~~~VvVtgg~~~~~~~~~~~~l~~~~~~~~~~~~~---~~i~--~~~~~GaGD~fsaai 451 (504)
T PTZ00347 386 ---------ARAAAQALAQYGSRYVLVKGGHDLIDPEACRDVLYDREKDRFYEFTA---NRIA--TINTHGTGCTLASAI 451 (504)
T ss_pred ---------HHHHHHHHHhcCCCEEEEeCCCCCcCCCcceEEEEcCCCCeEEEEEe---eeEC--CCCCCChHHHHHHHH
Confidence 235667777889999999999963 34554322 2 23332 3444 689999999999999
Q ss_pred HHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcc
Q 008168 503 MRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 503 l~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
+++|++| .++.+|+++|.++-..++..
T Consensus 452 aa~la~G-------~~l~eAv~~A~~~v~~~i~~ 478 (504)
T PTZ00347 452 SSFLARG-------YTVPDAVERAIGYVHEAIVR 478 (504)
T ss_pred HHHHhCC-------CCHHHHHHHHHHHHHHHHHh
Confidence 9999999 99999999998887666553
No 66
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.24 E-value=1.2e-10 Score=130.16 Aligned_cols=158 Identities=13% Similarity=0.110 Sum_probs=106.6
Q ss_pred CcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCC----ccccCchhHHHHHHHhhccCeEeecCHHHHHHhh
Q 008168 344 AKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPL----PLWQSGEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 344 ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~----~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~ 419 (575)
.+.|.++-+ .+....+.+.++++..+ +.+|++||..+. .++ .++..+.+.++++++|||+||..|++.|+
T Consensus 99 ~~aikiG~l--~s~~~i~~v~~~l~~~~--~~~vVlDPv~~~~~G~~l~--~~~~~~~~~~Ll~~advItPN~~Ea~~Lt 172 (530)
T PRK14713 99 VDAVKIGML--GDAEVIDAVRTWLAEHR--PPVVVLDPVMVATSGDRLL--EEDAEAALRELVPRADLITPNLPELAVLL 172 (530)
T ss_pred CCEEEECCc--CCHHHHHHHHHHHHhCC--CCCEEECCcccCCCCCCCC--CHHHHHHHHHHhhhhheecCChHHHHHHh
Confidence 566766532 12234455555554432 346999998643 343 23455667789999999999999999999
Q ss_pred CCCCC-CcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCc-----EEEEEcCCc-eeEecccCCCCCCcccCcc
Q 008168 420 GIKPT-EEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSK-----VHYYTKEDD-GAVLGTEDAPLTPFTSDMS 492 (575)
Q Consensus 420 g~~~~-~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~G-----a~v~~~~~~-~~v~a~~~~~v~~~vVDtt 492 (575)
|.+.. ...+ ..+.+.++...+...||||.|..+ ..++..++. ..++ .++++ ++|++
T Consensus 173 g~~~~~~~~d------------~~~aa~~L~~~~g~~VvItgG~~~~~~~~d~~~~~~~~~~~~~---~~~v~--~~~t~ 235 (530)
T PRK14713 173 GEPPATTWEE------------ALAQARRLAAETGTTVLVKGGHLDGQRAPDALVGPDGAVTEVP---GPRVD--TRNTH 235 (530)
T ss_pred CCCCCCCHHH------------HHHHHHHHHHhcCCEEEEeCCCCCCCcceEEEEcCCCeEEEEe---eeeeC--CCCCC
Confidence 86532 1111 124566676655568999988642 344544432 2333 23444 68999
Q ss_pred ChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHH
Q 008168 493 ASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGV 531 (575)
Q Consensus 493 GAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA 531 (575)
|+||+|.|+|+++|++| .++.+|+++|++.-.
T Consensus 236 GaGD~fsaalaa~La~G-------~~l~eAv~~A~~~v~ 267 (530)
T PRK14713 236 GTGCSLSSALATRLGRG-------GDWAAALRWATAWLH 267 (530)
T ss_pred cHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHH
Confidence 99999999999999999 999999999998433
No 67
>PLN02978 pyridoxal kinase
Probab=99.23 E-value=5.5e-10 Score=116.52 Aligned_cols=167 Identities=16% Similarity=0.071 Sum_probs=109.1
Q ss_pred CcEEEEecccccccchHHHHHHHHHHHhh--cCCEEEEcCCCCC--ccccCchhHHHHHH-HhhccCeEeecCHHHHHHh
Q 008168 344 AKMFYFSTHSMLERNMKSTTLQAIKISKQ--FGGIIFYDVNLPL--PLWQSGEETKMFIQ-QAWTLADVIEVTKQELEFL 418 (575)
Q Consensus 344 ad~v~~sg~~l~~~~~~e~~~~~l~~ak~--~G~~Vv~D~~~~~--~l~~~~~~~~~~l~-~ll~~aDIl~~N~~Ea~~L 418 (575)
++.+.++.+ .++...+.+.++++.++. .++++++||+... .+|.. ++..+.+. .+++++|+|+||..|++.|
T Consensus 87 ~~ai~~G~l--~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~-~~~~~~~~~~ll~~adiitPN~~Ea~~L 163 (308)
T PLN02978 87 YTHLLTGYI--GSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVP-PELVPVYREKVVPLATMLTPNQFEAEQL 163 (308)
T ss_pred cCEEEeccc--CCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCC-hhHHHHHHHHHHhhCCeeccCHHHHHHH
Confidence 566655532 234567788888888876 4578999998654 34532 33444454 5999999999999999999
Q ss_pred hCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCC-CcEEEEE---cC-----CceeEecccCCCCCCccc
Q 008168 419 CGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGT-SKVHYYT---KE-----DDGAVLGTEDAPLTPFTS 489 (575)
Q Consensus 419 ~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~-~Ga~v~~---~~-----~~~~v~a~~~~~v~~~vV 489 (575)
+|.+..+..+ ..++++++...|++.||||.+. .|.++.. .+ +..+. +..++++ ..
T Consensus 164 ~g~~~~~~~~------------~~~a~~~l~~~g~~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~--~~ 227 (308)
T PLN02978 164 TGIRIVTEED------------AREACAILHAAGPSKVVITSIDIDGKLLLVGSHRKEKGARPEQFK--IVIPKIP--AY 227 (308)
T ss_pred hCCCCCCHHH------------HHHHHHHHHHhCCCEEEEEEecCCCCEEEEEecccccCCCCceEE--EEccCCC--CC
Confidence 9965332111 2356677878899999998754 3433221 11 11121 1223343 23
Q ss_pred CccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcc
Q 008168 490 DMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 490 DttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
++|+||+|+|.+++.|++|+ .++.+|+++|.+.-..++..
T Consensus 228 -~~GtGD~fsA~laa~l~~g~------~~l~~A~~~A~~~v~~~i~~ 267 (308)
T PLN02978 228 -FTGTGDLMAALLLGWSHKYP------DNLDKAAELAVSSLQAVLRR 267 (308)
T ss_pred -CCCchHHHHHHHHHHHhcCC------cCHHHHHHHHHHHHHHHHHH
Confidence 58999999997777777641 47999999998877655553
No 68
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.22 E-value=3.3e-10 Score=114.69 Aligned_cols=164 Identities=12% Similarity=-0.041 Sum_probs=110.8
Q ss_pred hhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhh
Q 008168 340 VLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 340 ~l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~ 419 (575)
.+..++++++++- + . ..+.+..+++.++++++++++|+.. ++.... .... .+++.++||+||..|++.|+
T Consensus 74 ~~~~~d~v~ig~g-l-~--~~~~~~~i~~~~~~~~~pvVlDa~~---~~~~~~--~~~~-~~~~~~~iltPn~~E~~~L~ 143 (254)
T cd01171 74 LLERADAVVIGPG-L-G--RDEEAAEILEKALAKDKPLVLDADA---LNLLAD--EPSL-IKRYGPVVLTPHPGEFARLL 143 (254)
T ss_pred hhccCCEEEEecC-C-C--CCHHHHHHHHHHHhcCCCEEEEcHH---HHHhhc--Chhh-hccCCCEEECCCHHHHHHHh
Confidence 3567889988752 1 1 1156777888888889999999752 210000 0000 24578999999999999999
Q ss_pred CCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHH
Q 008168 420 GIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIV 499 (575)
Q Consensus 420 g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~ 499 (575)
|....+..+ ...+.++++.+++ ..+||+.|. +.+++++++..++.. ...+ .++++|+||+|.
T Consensus 144 g~~~~~~~~-----------~~~~~a~~l~~~~-~~~vvlkG~-~~~i~~~~~~~~~~~---~~~~--~~~~~GaGD~la 205 (254)
T cd01171 144 GALVEEIQA-----------DRLAAAREAAAKL-GATVVLKGA-VTVIADPDGRVYVNP---TGNP--GLATGGSGDVLA 205 (254)
T ss_pred CCChhhhhh-----------HHHHHHHHHHHHc-CcEEEEcCC-CCEEECCCCcEEEEC---CCCc--ccccCchHHHHH
Confidence 975322110 0135667777766 455556674 666676554444433 2333 689999999997
Q ss_pred HHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcccc
Q 008168 500 AGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQA 538 (575)
Q Consensus 500 AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G 538 (575)
|.+.+.+++| +++.+|+++|+.+.+.+.....
T Consensus 206 g~iaa~la~g-------~~~~eA~~~A~~~~~~a~~~~~ 237 (254)
T cd01171 206 GIIAALLAQG-------LSPLEAAALAVYLHGLAGDLAA 237 (254)
T ss_pred HHHHHHHHcC-------CCHHHHHHHHHHHHHHHHHHHH
Confidence 7777788899 8999999999999998887543
No 69
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=99.21 E-value=2e-10 Score=115.99 Aligned_cols=164 Identities=15% Similarity=0.080 Sum_probs=103.1
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCc--cccCchhHHHHHH-HhhccCeEeecCHHHHHHhh
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLP--LWQSGEETKMFIQ-QAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~--l~~~~~~~~~~l~-~ll~~aDIl~~N~~Ea~~L~ 419 (575)
..+.|.++.+. + .+.+..+.+..+..+.++++||-.... ......+..+.+. .+++++|||.||..|++.|+
T Consensus 60 ~~~aikiG~l~--~---~~~v~~i~~~l~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~ 134 (246)
T PF08543_consen 60 KFDAIKIGYLG--S---AEQVEIIADFLKKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLT 134 (246)
T ss_dssp C-SEEEE-S-S--S---HHHHHHHHHHHHHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHH
T ss_pred cccEEEEcccC--C---chhhhhHHHHHhccCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHh
Confidence 57888877432 2 233334444445567799999964311 1111233344444 59999999999999999999
Q ss_pred CCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCC----c---EEEEEcCCceeEecccCCCCCCcccCcc
Q 008168 420 GIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTS----K---VHYYTKEDDGAVLGTEDAPLTPFTSDMS 492 (575)
Q Consensus 420 g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~----G---a~v~~~~~~~~v~a~~~~~v~~~vVDtt 492 (575)
|.+..+..+ ..+++++|++.|++.||||-+.. + -+++..+....+. . +.++ ..+..
T Consensus 135 g~~i~~~~~------------~~~~~~~l~~~G~~~VvItg~~~~~~~~~~~~~l~~~~~~~~~~-~--~~~~--~~~~~ 197 (246)
T PF08543_consen 135 GREINSEED------------IEEAAKALLALGPKNVVITGGHLDGDEGIITDVLYDGGEFYWLS-S--PRIP--TGSFH 197 (246)
T ss_dssp TS--SSHHH------------HHHHHHHHHHTS-SEEEEEEEEGGSSCEEEEEEEETTSEEEEEE-E--EEEC--TSGCT
T ss_pred CCCCCChHh------------HHHHHHHHHHhCCceEEEeeeccccccccccceeeeccceeecc-e--eEEc--CCCCC
Confidence 966554322 24778888899999999998763 2 2334233222222 1 2222 25789
Q ss_pred ChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhc
Q 008168 493 ASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQW 535 (575)
Q Consensus 493 GAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~ 535 (575)
|.||.|.|+|++.|++| +++.+|++.|...-..++.
T Consensus 198 GTGd~fss~laa~l~~g-------~~l~~Av~~A~~~v~~~i~ 233 (246)
T PF08543_consen 198 GTGDLFSSALAAFLAKG-------YSLEEAVEKAKNFVRRAIK 233 (246)
T ss_dssp THHHHHHHHHHHHHHTT-------SSHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999888766655
No 70
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.17 E-value=3.3e-10 Score=131.30 Aligned_cols=162 Identities=12% Similarity=0.111 Sum_probs=111.4
Q ss_pred CcEEEEecccccccchHHHHHHHHHHHhhc-CCEEEEcCCCCC----ccccCchhHHHHHHHhhccCeEeecCHHHHHHh
Q 008168 344 AKMFYFSTHSMLERNMKSTTLQAIKISKQF-GGIIFYDVNLPL----PLWQSGEETKMFIQQAWTLADVIEVTKQELEFL 418 (575)
Q Consensus 344 ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~-G~~Vv~D~~~~~----~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L 418 (575)
.+.|-++-+ . ..+.+..+++.+++. +.+|++||.... .++ .++..+.+..+++++|+|+||..|+..|
T Consensus 311 ~~aiKiGmL---~--s~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~--~~~~~~~l~~Llp~adlItPN~~Ea~~L 383 (755)
T PRK09517 311 VDAVKLGML---G--SADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLL--DADATEALRRLAVHVDVVTPNIPELAVL 383 (755)
T ss_pred CCEEEECCC---C--CHHHHHHHHHHHHhCCCCCEEEecccccCCCCCCC--CHHHHHHHHHHhCcccCccCCHHHHHHH
Confidence 466666532 1 245566666777664 467999997532 233 1233444567999999999999999999
Q ss_pred hCCCC-CCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCC------CcEEEEEcCCceeEecccCCCCCCcccCc
Q 008168 419 CGIKP-TEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGT------SKVHYYTKEDDGAVLGTEDAPLTPFTSDM 491 (575)
Q Consensus 419 ~g~~~-~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~------~Ga~v~~~~~~~~v~a~~~~~v~~~vVDt 491 (575)
+|... ....+ ..++++++.+.+...||||.|. .|++++..+....++. +.++ ++|+
T Consensus 384 ~g~~~~~~~~d------------~~~aa~~L~~~~g~~VVVkgGh~~~~~~~~~l~~~~~~~~~~~~---~~v~--~~~t 446 (755)
T PRK09517 384 CGEAPAITMDE------------AIAQARGFARTHGTIVIVKGGHLTGDLADNAVVRPDGSVHQVEN---PRVN--TTNS 446 (755)
T ss_pred hCCCCCCCHHH------------HHHHHHHHHHhcCCEEEEcCCcCCCCccceEEEeCCCeEEEEee---cccC--CCCC
Confidence 98532 11111 2355667766544589999983 4666554332223332 4454 6899
Q ss_pred cChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcc
Q 008168 492 SASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 492 tGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
+|+||+|.|+|+++|++| .++.+|+++|+++-..++..
T Consensus 447 ~GaGDtfsaaiaa~La~G-------~sl~eAv~~A~~~v~~~i~~ 484 (755)
T PRK09517 447 HGTGCSLSAALATLIAAG-------ESVEKALEWATRWLNEALRH 484 (755)
T ss_pred cChHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 99999999999988777754
No 71
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.14 E-value=1.8e-09 Score=108.83 Aligned_cols=175 Identities=17% Similarity=0.049 Sum_probs=112.3
Q ss_pred hhhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhcc--CeEeecCHHHH
Q 008168 338 IDVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTL--ADVIEVTKQEL 415 (575)
Q Consensus 338 ~~~l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~--aDIl~~N~~Ea 415 (575)
...++.++++++. ..+..+...+.+..+++.+++.+++|++||...... .. ..+.+..++.. +|||+||..|+
T Consensus 44 ~~~l~~~d~vvi~-~G~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~~~---~~-~~~~~~~ll~~~~~~ilTPN~~Ea 118 (242)
T cd01170 44 EELAKIAGALVIN-IGTLTSEQIEAMLKAGKAANQLGKPVVLDPVGVGAT---SF-RTEVAKELLAEGQPTVIRGNASEI 118 (242)
T ss_pred HHHHHHcCcEEEe-CCCCChHHHHHHHHHHHHHHhcCCCEEEcccccCcc---hh-HHHHHHHHHhcCCCeEEcCCHHHH
Confidence 4567889999985 323333455667777778888999999998643211 11 11234455554 99999999999
Q ss_pred HHhhCCCCCCcc-cccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccCh
Q 008168 416 EFLCGIKPTEEF-DTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSAS 494 (575)
Q Consensus 416 ~~L~g~~~~~~~-d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGA 494 (575)
..|+|....... +... . . .....+.++++...+...|++| |.... +++++....++. .+.. +.++.|+
T Consensus 119 ~~L~g~~~~~~~~~~~~-~--~-~~~~~~aa~~l~~~~~~~Vllk-G~~d~-l~~~~~~~~~~~---~~~~--~~~v~Gt 187 (242)
T cd01170 119 AALAGLTGLGKGVDSSS-S--D-EEDALELAKALARKYGAVVVVT-GEVDY-ITDGERVVVVKN---GHPL--LTKITGT 187 (242)
T ss_pred HHHhCCCCCcCcccCCC-c--c-hHHHHHHHHHHHHHhCCEEEEE-CCCcE-EEECCEEEEEeC---CCcc--ccCCCch
Confidence 999987532100 0000 0 0 0002466777776665678999 66554 455443333432 1111 4566899
Q ss_pred hHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhc
Q 008168 495 GDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQW 535 (575)
Q Consensus 495 GDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~ 535 (575)
||+|.|++.+.|++| .++.+|+..|...-+.++.
T Consensus 188 GdtLa~aiAa~LA~g-------~~~~~A~~~A~~~~~~a~~ 221 (242)
T cd01170 188 GCLLGAVIAAFLAVG-------DDPLEAAVSAVLVYGIAGE 221 (242)
T ss_pred HHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHHHHH
Confidence 999999999999999 8999999998766655543
No 72
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=99.11 E-value=2e-09 Score=108.72 Aligned_cols=171 Identities=16% Similarity=0.072 Sum_probs=119.8
Q ss_pred hhccCcEEEEecccccccchHHHHHHHHHHHhhc--CCEEEEcCCCC--CccccCchhHHHHHHHhhccCeEeecCHHHH
Q 008168 340 VLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQF--GGIIFYDVNLP--LPLWQSGEETKMFIQQAWTLADVIEVTKQEL 415 (575)
Q Consensus 340 ~l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~--G~~Vv~D~~~~--~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea 415 (575)
.+..+|.|+.+.+. +......+..+++..|+. ...+++||... ..++...+-.......+++.+|++.||..|+
T Consensus 70 ~~~~~davltGYlg--s~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fEL 147 (281)
T COG2240 70 KLGECDAVLTGYLG--SAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFEL 147 (281)
T ss_pred cccccCEEEEccCC--CHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHHH
Confidence 56678988765432 344667778888887776 45699999542 2344433333333447999999999999999
Q ss_pred HHhhCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCC-----cEEEEEcCCceeEecccCCCCCCcccC
Q 008168 416 EFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTS-----KVHYYTKEDDGAVLGTEDAPLTPFTSD 490 (575)
Q Consensus 416 ~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~-----Ga~v~~~~~~~~v~a~~~~~v~~~vVD 490 (575)
+.|+|....+..+ ...+++.|.+.|+++|+||.=.. |.+++..........+- +.+ ..+
T Consensus 148 e~Ltg~~~~~~~d------------a~~aa~~L~~~gp~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~-~~v---~~~ 211 (281)
T COG2240 148 EILTGKPLNTLDD------------AVKAARKLGADGPKIVLVTSLSRAGMSTGNFEMLGKSAELAWHIS-PLV---PFI 211 (281)
T ss_pred HHHhCCCCCCHHH------------HHHHHHHHhhcCCCEEEEecccccCCCCceEEEeccchhhhhhhh-hcC---CCC
Confidence 9999988665433 24677778888999999996333 55555544321111111 123 245
Q ss_pred ccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhc
Q 008168 491 MSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQW 535 (575)
Q Consensus 491 ttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~ 535 (575)
.+|.||.|.|-|++.|++| .++.+|+..+..+-...++
T Consensus 212 ~~GtGDL~sallla~lL~g-------~~~~~al~~~~~~V~evl~ 249 (281)
T COG2240 212 PNGTGDLFSALLLARLLEG-------LSLTQALERATAAVYEVLQ 249 (281)
T ss_pred CCCchHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999 8999999999887766655
No 73
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.06 E-value=4.5e-09 Score=107.71 Aligned_cols=175 Identities=11% Similarity=0.049 Sum_probs=109.8
Q ss_pred hhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHh
Q 008168 339 DVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFL 418 (575)
Q Consensus 339 ~~l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L 418 (575)
..+..++++++++- +... ..+..+++.+++.+.+|++|+... . ...........+++|+||..|+..|
T Consensus 88 ~~~~~~davvig~G-l~~~---~~~~~l~~~~~~~~~pvVlDa~g~-~-------l~~~~~~~~~~~~vItPN~~El~~L 155 (272)
T TIGR00196 88 ELLERYDVVVIGPG-LGQD---PSFKKAVEEVLELDKPVVLDADAL-N-------LLTYDKPKREGEVILTPHPGEFKRL 155 (272)
T ss_pred hhhccCCEEEEcCC-CCCC---HHHHHHHHHHHhcCCCEEEEhHHH-H-------HHhhcccccCCCEEECCCHHHHHHH
Confidence 34567899999753 2111 226678888888899999997421 0 0111100134689999999999999
Q ss_pred hCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHH
Q 008168 419 CGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGI 498 (575)
Q Consensus 419 ~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF 498 (575)
+|.......+ ..+.++++.+. ...+||+.|..++++...+ ..++.. .+.+ ..+++|+||++
T Consensus 156 ~g~~~~~~~~------------~~~aa~~l~~~-~~~vVv~kG~~~~i~~~~~-~~~~~~---~~~~--~~~~~GaGD~l 216 (272)
T TIGR00196 156 LGLVNEIQGD------------RLEAAQDIAQK-LQAVVVLKGAADVIAAPDG-DLWINK---TGNA--ALAKGGTGDVL 216 (272)
T ss_pred hCCchhhhhh------------HHHHHHHHHHH-hCCEEEEcCCCCEEEcCCC-eEEEEC---CCCC--ccCCCCchHHH
Confidence 9964322111 23566667664 3568888999998655333 233322 2333 67899999995
Q ss_pred HHHHHHHHHcCCCCCCCchhHHHHHHHH---HHHHHHHhccc-ccCCCCCCHHHHHHhh
Q 008168 499 VAGIMRMLTVQPHLITDKGYLVRTIKYA---IDCGVRDQWSQ-ARTLGYPPKEGMEEEV 553 (575)
Q Consensus 499 ~AGfl~~L~~g~~~~~d~~sl~eAl~~A---~aaAA~~v~~~-G~~~g~pt~eeve~~l 553 (575)
.|.+.+.+++| .++.+|+..| +..|+..+... |.. + -+..+|...|
T Consensus 217 ag~iaa~la~g-------~~~~~A~~~a~~~~~~a~~~~~~~~g~~-~-~~~~dl~~~i 266 (272)
T TIGR00196 217 AGLIGGLLAQN-------LDPFDAACNAAFAHGLAGDLALKNHGAY-G-LTALDLIEKI 266 (272)
T ss_pred HHHHHHHHhCC-------CCHHHHHHHHHHHHHHHHHHHHHhcCCC-C-cCHHHHHHHH
Confidence 55555555688 8899999666 77777665443 532 3 3556666554
No 74
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=99.03 E-value=6.7e-09 Score=104.44 Aligned_cols=151 Identities=21% Similarity=0.178 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHhhcC-CEEEEcCCCCCc----cccCchhHHH-HHHHhhccCeEeecCHHHHHHhhCC-CCCCcccccc
Q 008168 359 MKSTTLQAIKISKQFG-GIIFYDVNLPLP----LWQSGEETKM-FIQQAWTLADVIEVTKQELEFLCGI-KPTEEFDTKN 431 (575)
Q Consensus 359 ~~e~~~~~l~~ak~~G-~~Vv~D~~~~~~----l~~~~~~~~~-~l~~ll~~aDIl~~N~~Ea~~L~g~-~~~~~~d~~~ 431 (575)
..+.+..+.+..++++ .++++||..... +. .++..+ +...++++++|+.||..|++.|+|. ......+
T Consensus 83 ~~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll--~~~a~~~l~~~LlP~a~vvTPNl~EA~~L~g~~~i~~~~d--- 157 (263)
T COG0351 83 SAEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLL--DEEAVEALREELLPLATVVTPNLPEAEALSGLPKIKTEED--- 157 (263)
T ss_pred CHHHHHHHHHHHHhcCCCcEEECceEEEcCCCccc--ChHHHHHHHHHhhccCeEecCCHHHHHHHcCCCccCCHHH---
Confidence 3556666677777777 779999954221 21 123333 4458999999999999999999995 4443322
Q ss_pred cccccccCCcHHHHHHHhhcCCCEEEEEcCCCc----EEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHH
Q 008168 432 NARSKFVHYEPEVIAPLWHENLKVLFVTNGTSK----VHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLT 507 (575)
Q Consensus 432 ~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~G----a~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~ 507 (575)
..++.+.+.+.|++.|+|+-|-.. -++|+++.... ++.+.++ .-+|.|+|++|.|++.+.|+
T Consensus 158 ---------~~~a~~~i~~~g~~~VliKGGH~~~~~~D~l~~~~~~~~---f~~~ri~--t~~tHGTGCTlSaAIaa~LA 223 (263)
T COG0351 158 ---------MKEAAKLLHELGAKAVLIKGGHLEGEAVDVLYDGGSFYT---FEAPRIP--TKNTHGTGCTLSAAIAANLA 223 (263)
T ss_pred ---------HHHHHHHHHHhCCCEEEEcCCCCCCCceeEEEcCCceEE---EeccccC--CCCCCCccHHHHHHHHHHHH
Confidence 235555666889999999987643 34455542222 2224444 56899999999999999999
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHHhc
Q 008168 508 VQPHLITDKGYLVRTIKYAIDCGVRDQW 535 (575)
Q Consensus 508 ~g~~~~~d~~sl~eAl~~A~aaAA~~v~ 535 (575)
+| .++.+|++.|-..-..++.
T Consensus 224 ~G-------~~l~~AV~~Ak~fv~~AI~ 244 (263)
T COG0351 224 KG-------LSLEEAVKKAKEFVTRAIR 244 (263)
T ss_pred cC-------CCHHHHHHHHHHHHHHHHh
Confidence 99 9999999999988877776
No 75
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=98.73 E-value=4.6e-07 Score=92.57 Aligned_cols=172 Identities=16% Similarity=0.063 Sum_probs=105.4
Q ss_pred hhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhc--cCeEeecCHHHHH
Q 008168 339 DVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT--LADVIEVTKQELE 416 (575)
Q Consensus 339 ~~l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~--~aDIl~~N~~Ea~ 416 (575)
+.+..++.+++. ...+.+...+.+..+++.+++.++++++||...... ... .+....+++ +++||+||..|+.
T Consensus 50 ~~~~~~~alvi~-~G~l~~~~~~~i~~~~~~a~~~~~pvVlDpv~~~~~-~~~---~~~~~~ll~~~~~~vItPN~~E~~ 124 (263)
T PRK09355 50 EMAKIAGALVIN-IGTLTEERIEAMLAAGKIANEAGKPVVLDPVGVGAT-SYR---TEFALELLAEVKPAVIRGNASEIA 124 (263)
T ss_pred HHHHhcCceEEe-CCCCCHHHHHHHHHHHHHHHhcCCCEEECCcccCcc-hhh---HHHHHHHHHhcCCcEecCCHHHHH
Confidence 456678888885 333444445556777777888899999998643211 111 222233443 6899999999999
Q ss_pred HhhCCCCCCcc-cccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChh
Q 008168 417 FLCGIKPTEEF-DTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASG 495 (575)
Q Consensus 417 ~L~g~~~~~~~-d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAG 495 (575)
.|+|....... +... ......+.++.+..++...|++|-+.. ++++++....+.. ..+ ...+.+|+|
T Consensus 125 ~L~g~~~~~~~vd~~~-----~~~~~~~~a~~la~~~~~~VvvkG~~d--~I~~~~~~~~~~~--g~~---~~~~v~GtG 192 (263)
T PRK09355 125 ALAGEAAETKGVDSTD-----GSADAVEIAKAAAKKYGTVVVVTGEVD--YITDGERVVSVHN--GHP---LMTKVTGTG 192 (263)
T ss_pred HHhCCCcccCCcCCCC-----CHHHHHHHHHHHHHHhCCEEEEECCCc--EEEeCCEEEEEeC--CCc---ccCCccccc
Confidence 99986421000 0000 000023566677766556788885443 3344332223321 111 145669999
Q ss_pred HHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHh
Q 008168 496 DGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQ 534 (575)
Q Consensus 496 DaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v 534 (575)
|++.|.+.+.|+.| .++.+|+..|...-+.+-
T Consensus 193 c~L~~~iaa~lA~g-------~~~~~A~~~A~~~~~~a~ 224 (263)
T PRK09355 193 CLLSAVVAAFAAVE-------KDYLEAAAAACAVYGIAG 224 (263)
T ss_pred HHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHH
Confidence 99999999999998 788888888776655543
No 76
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=98.68 E-value=7.3e-07 Score=93.08 Aligned_cols=140 Identities=9% Similarity=0.042 Sum_probs=89.7
Q ss_pred EEEEcCCCCCcc---ccCchhH-HHHHHHhhccCeEeecCHHHHHHhhCCC----CCCcccccccccccccCCcHHHHHH
Q 008168 376 IIFYDVNLPLPL---WQSGEET-KMFIQQAWTLADVIEVTKQELEFLCGIK----PTEEFDTKNNARSKFVHYEPEVIAP 447 (575)
Q Consensus 376 ~Vv~D~~~~~~l---~~~~~~~-~~~l~~ll~~aDIl~~N~~Ea~~L~g~~----~~~~~d~~~~~~~~~~~~~~e~~~~ 447 (575)
+|++||.....- +....+. ..+...++++++||.||..|++.|+|.. .....+ ..+++++
T Consensus 107 ~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~Ea~~L~g~~~~~~~~~~~~------------~~~aA~~ 174 (321)
T PTZ00493 107 LVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFYECKVILEALDCQMDLSKAN------------MTELCKL 174 (321)
T ss_pred eEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHHHHHHHhCCCcccCCCCHHH------------HHHHHHH
Confidence 489999642211 1110122 3334569999999999999999998821 111111 2467777
Q ss_pred Hhh-cCCCEEEEEcCCCc----------E--EEEEcC--------------Cc----eeEecccCCCCCCcccCccChhH
Q 008168 448 LWH-ENLKVLFVTNGTSK----------V--HYYTKE--------------DD----GAVLGTEDAPLTPFTSDMSASGD 496 (575)
Q Consensus 448 l~~-~g~k~VVVT~G~~G----------a--~v~~~~--------------~~----~~v~a~~~~~v~~~vVDttGAGD 496 (575)
+.+ .|++.|+||-|... + +++..+ +. ..+..+....++ ..++.|.||
T Consensus 175 l~~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~--~~~~hGTGc 252 (321)
T PTZ00493 175 VTEKLNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGSYPTGEKQQIDAGGVTYLYDVYKLRSKRKP--GKDIHGTGC 252 (321)
T ss_pred HHHhcCCCEEEECcCCCcccccccccccceeEEecCCccccccccccccccccccccceEEEEEecccC--CCCCCChHH
Confidence 876 69999999977531 1 233211 10 011112222332 356789999
Q ss_pred HHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcc
Q 008168 497 GIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 497 aF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
+|.+++++.|++| .++.+|++.|...-..++..
T Consensus 253 ~fASAIAa~LA~G-------~~l~~Av~~A~~fv~~aI~~ 285 (321)
T PTZ00493 253 TLSTAIACYLAKK-------HNILQSCIESKKYIYNCIRY 285 (321)
T ss_pred HHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999998777666553
No 77
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=98.48 E-value=3.4e-06 Score=85.53 Aligned_cols=171 Identities=11% Similarity=-0.024 Sum_probs=101.7
Q ss_pred hhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhc--cCeEeecCHHHHH
Q 008168 339 DVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT--LADVIEVTKQELE 416 (575)
Q Consensus 339 ~~l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~--~aDIl~~N~~Ea~ 416 (575)
+.+..++.+.+.-- ++.+...+.+..+++.+++.+++|++||...... .. .......+++ +++||+||..|+.
T Consensus 45 ~~~~~~~al~ik~G-~l~~~~~~~i~~~~~~~~~~~~pvVlDPV~~~~s---~~-r~~~~~~Ll~~~~~~vITpN~~E~~ 119 (249)
T TIGR00694 45 ELAKIAGALVINIG-TLDKESIEAMIAAGKSANELGVPVVLDPVGVGAT---KF-RTETALELLSEGRFAAIRGNAGEIA 119 (249)
T ss_pred HHHHHcCceEEeCC-CCCHHHHHHHHHHHHHHHhcCCCEEEcccccccc---hh-HHHHHHHHHhhcCCceeCCCHHHHH
Confidence 44667788877632 2233346667777888888899999998643321 11 1133345565 4799999999999
Q ss_pred HhhCCCCC-CcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChh
Q 008168 417 FLCGIKPT-EEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASG 495 (575)
Q Consensus 417 ~L~g~~~~-~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAG 495 (575)
.|+|.... ..-|... ..+...+.++++.+.+...|++|-+.. ++++++....+.. ..+. .-..+|.|
T Consensus 120 ~L~g~~~~~~gvd~~~-----~~~d~~~~a~~la~~~~~~VllkG~~D--~i~~~~~~~~~~~--g~~~---~~~~~GtG 187 (249)
T TIGR00694 120 SLAGETGLMKGVDSGE-----GAADAIRAAQQAAQKYGTVVVITGEVD--YVSDGTSVYTIHN--GTEL---LGKITGSG 187 (249)
T ss_pred HHhCCCCCCCCcCCcc-----chHHHHHHHHHHHHHhCCEEEEECCCc--EEEeCCEEEEECC--CChH---HhCCccch
Confidence 99985410 0000000 000023556667666444777775432 3444332222211 1111 12247999
Q ss_pred HHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHH
Q 008168 496 DGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRD 533 (575)
Q Consensus 496 DaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~ 533 (575)
|++.+.+.+.|+.| .++.+|+..|...-..+
T Consensus 188 c~LssaIaa~LA~g-------~~~~~A~~~A~~~~~~a 218 (249)
T TIGR00694 188 CLLGSVVAAFCAVE-------EDPLDAAISACLLYKIA 218 (249)
T ss_pred HHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHH
Confidence 99999999999999 78888888887444333
No 78
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=98.25 E-value=2.6e-05 Score=77.83 Aligned_cols=167 Identities=15% Similarity=0.143 Sum_probs=99.8
Q ss_pred hccCcEEEEecccccccchHHHHHHHHHHHhhc--CCEEEEcCCCC--CccccCchhHHHHHHHhhccCeEeecCHHHHH
Q 008168 341 LKEAKMFYFSTHSMLERNMKSTTLQAIKISKQF--GGIIFYDVNLP--LPLWQSGEETKMFIQQAWTLADVIEVTKQELE 416 (575)
Q Consensus 341 l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~--G~~Vv~D~~~~--~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~ 416 (575)
+...+++..+..+ +......+..++...++. +...++||... ..++.+.+-..-+-.-+++.+|+|.||.-|++
T Consensus 79 ~~~Y~~vLTGY~~--n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr~~i~~ladiiTPNqFE~E 156 (308)
T KOG2599|consen 79 LNKYDAVLTGYLP--NVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYRDLIIPLADIITPNQFEAE 156 (308)
T ss_pred ccccceeeeeccC--ChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHHHHHHHHHhhcchhhhcCCcchhhh
Confidence 4467777655332 223455556666665554 46678898532 23444322222222234456999999999999
Q ss_pred HhhCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCC----c--EEEE--EcCCceeEecccCCCCCCcc
Q 008168 417 FLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTS----K--VHYY--TKEDDGAVLGTEDAPLTPFT 488 (575)
Q Consensus 417 ~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~----G--a~v~--~~~~~~~v~a~~~~~v~~~v 488 (575)
.|+|......++ ..+++..|+++|++.||||...- | .+++ ..+......-+| .+ .
T Consensus 157 iLtg~~I~t~ed------------a~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~ip--ki---~ 219 (308)
T KOG2599|consen 157 ILTGMEIRTEED------------AKRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSSCGSERFRYLIP--KI---D 219 (308)
T ss_pred hhcCCeeccHHH------------HHHHHHHHHHhCCCEEEEEeeeeCCCCCcEEEEEEeccCCceEEEEec--cc---c
Confidence 999998776544 24778888899999999996433 4 1122 222222222221 12 2
Q ss_pred cCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHH
Q 008168 489 SDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCG 530 (575)
Q Consensus 489 VDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaA 530 (575)
-=-||.||.|.|-|++.+...++ ..++..|+..+..+-
T Consensus 220 ~~FtGTGDLfsaLLla~~~~~~~----~~~l~~a~e~~ls~~ 257 (308)
T KOG2599|consen 220 GVFTGTGDLFSALLLAWLHESPD----NDDLSKAVEQVLSSV 257 (308)
T ss_pred eEEecccHHHHHHHHHHHhcCCC----cchHHHHHHHHHHHH
Confidence 33589999999988888876521 245666665554443
No 79
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=97.72 E-value=0.0016 Score=71.09 Aligned_cols=164 Identities=18% Similarity=0.090 Sum_probs=90.9
Q ss_pred EEecCChHHHHHHHHHHcCCCe--EEEEEeCCChHHHHHHHHHHh-CCCccc------eEEE------cCCCCceEEEEE
Q 008168 247 IRSPGGCTGSAAIALARLGGKV--AFMGKLGDDEYGQAMLYYMNV-NNVQTR------SVRI------DAKRPTAVSQMK 311 (575)
Q Consensus 247 ~~~~GG~a~NvA~aLarLG~~v--~lig~VG~D~~G~~l~~~L~~-~GIdt~------~v~~------~~~~~T~~~~i~ 311 (575)
..+.||.+.-+|..|+++|..+ .+++.++. .....|.. .+|-.- .+.. .++..+-+-+|+
T Consensus 98 ~~rmGGqAgimAn~la~lg~~~vV~~~p~lsk-----~qa~lf~~~~~i~~P~~e~g~l~l~~p~e~~~~~d~~~IH~I~ 172 (463)
T PRK03979 98 EERMGGQAGIISNLLAILDLKKVIAYTPWLSK-----KQAEMFVDSDNLLYPVVENGKLVLKKPREAYKPNDPLKINRIF 172 (463)
T ss_pred eEEeCChHHHHHHHHHhcCCceEEEeCCCCCH-----HHHHHhCCCCCeeeccccCCceeeccchhhccCCCCcceEEEE
Confidence 3589999999999999999884 44555553 23344422 122111 1110 012222244444
Q ss_pred EcCCCCe--------------EEEEecCCccccCCc-cccchhhh----ccCcEEEEecccccccc-----h----HHHH
Q 008168 312 IGKRGRL--------------RMTCVKPCAEDALTK-SEINIDVL----KEAKMFYFSTHSMLERN-----M----KSTT 363 (575)
Q Consensus 312 vd~~Ger--------------~~~~~~~ga~~~lt~-~~i~~~~l----~~ad~v~~sg~~l~~~~-----~----~e~~ 363 (575)
-.+.|.+ ++++.+...+..+.. +++ .+.+ ..+|.++++|+.++.+. . .+.+
T Consensus 173 Ey~~G~~~~l~~~~~~aPRaNRfI~s~D~~n~~l~~~eef-~~~L~ei~~~~D~avlSG~q~i~~~y~dg~~~~~~l~r~ 251 (463)
T PRK03979 173 EFKKGLEFKLGGEKIIVPRSNRFIVSSRPEWLRIEIKDEL-KEFLPEIGKMVDGAILSGYQGIKEEYSDGKTAEYYLKRA 251 (463)
T ss_pred EeCCCCEEEecCccEecCCCCeEEEecCCCCccceecHHH-HHHHHhhccCCCEEEEechhhhhccccccccHHHHHHHH
Confidence 4444442 233222222222211 112 1233 34899999998665441 1 2233
Q ss_pred HHHHHHH--hhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhC
Q 008168 364 LQAIKIS--KQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCG 420 (575)
Q Consensus 364 ~~~l~~a--k~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g 420 (575)
.+.++.. ...+++|-|..... .+..-....+..+++++|.+-+|++|+..++.
T Consensus 252 ~~~i~~L~~~~~~i~iH~E~As~----~~~~ir~~i~~~ilp~vDSlGmNE~ELa~l~~ 306 (463)
T PRK03979 252 KEDIKLLKKKNKDIKIHVEFASI----QNREIRKKIITYILPHVDSVGMDETEIANILN 306 (463)
T ss_pred HHHHHHHhhCCCCceEEEEeccc----cCHHHHHHHHHhhccccccccCCHHHHHHHHH
Confidence 3344444 33578898887532 22344556677899999999999999998764
No 80
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=97.55 E-value=0.0013 Score=69.72 Aligned_cols=170 Identities=14% Similarity=0.125 Sum_probs=103.8
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcC-CEEEEcCCCCCc---cccCchhHHHHHHHhhccCeEeecCHHHHHHh
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFG-GIIFYDVNLPLP---LWQSGEETKMFIQQAWTLADVIEVTKQELEFL 418 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G-~~Vv~D~~~~~~---l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L 418 (575)
.|+++-.+- +.++.....+.+.++. .+ ..+++||-.... .....+...-+.+++++++||+.||..|+-.|
T Consensus 92 ~C~VvKTGM--L~~~~I~~vi~q~l~~---~~~~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~Ea~~L 166 (523)
T KOG2598|consen 92 KCDVVKTGM--LPSPEIVKVIEQSLQK---FNIPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPEAFIL 166 (523)
T ss_pred cccEEeecC--cCchHHHHHHHHHHHh---hcCcceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHHHHHH
Confidence 367666552 2233333444444444 33 358899843211 11112233456778999999999999999999
Q ss_pred hCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCc----------------E-EEEEcCCceeEecccC
Q 008168 419 CGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSK----------------V-HYYTKEDDGAVLGTED 481 (575)
Q Consensus 419 ~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~G----------------a-~v~~~~~~~~v~a~~~ 481 (575)
++....+..... .+.+ ....+..+.+.|++.|+|+.|.-. . ++|.+.+ +..++.
T Consensus 167 l~~~~~~~~~i~-----~v~d-i~~~~~~ihk~gpk~VlvkGghiP~~~~~~~s~d~~~~~~~DvlydG~~---F~~f~~ 237 (523)
T KOG2598|consen 167 LKKEKREISKIQ-----SVFD-IAKDAAKIHKLGPKNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLYDGKE---FYIFKS 237 (523)
T ss_pred HhhcccCCcccc-----cHHH-HHHHHHHHHhcCcceEEEeCCCcCccccccccCcccCCceEEEEEecce---EEEecc
Confidence 874222111100 0000 234566777889999999987432 1 1233322 222332
Q ss_pred CCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhc
Q 008168 482 APLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQW 535 (575)
Q Consensus 482 ~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~ 535 (575)
+-+. ...+.|.|-++.++++.-|+.| .++.+|+..|...--.+++
T Consensus 238 ~~~~--t~~tHGtgCtLaSAIASnLA~g-------~sl~qAv~~ai~yvq~Ai~ 282 (523)
T KOG2598|consen 238 PYLA--TKHTHGTGCTLASAIASNLARG-------YSLLQAVQGAIEYVQNAIA 282 (523)
T ss_pred cccc--cccccCccchHHHHHHHHHhhc-------CCHHHHHHHHHHHHHHHHH
Confidence 3333 5788999999999999999999 9999999988876654444
No 81
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=97.51 E-value=0.0053 Score=66.84 Aligned_cols=169 Identities=16% Similarity=0.094 Sum_probs=92.5
Q ss_pred CceEEecCChHHHHHHHHHHcCCCeEE-EEEeCCChHHHHHHHHHHhCCCccceE-----EEc-------CCCCceEEEE
Q 008168 244 EKFIRSPGGCTGSAAIALARLGGKVAF-MGKLGDDEYGQAMLYYMNVNNVQTRSV-----RID-------AKRPTAVSQM 310 (575)
Q Consensus 244 ~~~~~~~GG~a~NvA~aLarLG~~v~l-ig~VG~D~~G~~l~~~L~~~GIdt~~v-----~~~-------~~~~T~~~~i 310 (575)
.....+.||.+.-+|..|+++|..+.+ .+..-+ +...+.|...+|-.-.+ ... .....-+-+|
T Consensus 84 ~~~~~rmGGnAgimAn~la~lg~~~Vi~~~~~ls----k~q~~lf~~~~i~~p~~~~~~~l~~~~~~~a~~~~~d~IH~I 159 (453)
T PRK14039 84 DNSEIRMGGNAGIMANVLSELGASRVVPNVAVPS----KTQLSLFSKKAVYFPGMPLQASETDGEKVGASSSDQEPIHFV 159 (453)
T ss_pred cCceEEeCChHHHHHHHHHhcCCceEEEcCCCCC----HHHHHhcCCCCEEeccccccccccCccccccccCCCCCceEE
Confidence 345689999999999999999998644 333222 33445552222211100 000 0112233333
Q ss_pred EEcCCCCe--------------EEEEecCCccccCCc-cccchhhh----ccCcEEEEecccccccc------hHHHH--
Q 008168 311 KIGKRGRL--------------RMTCVKPCAEDALTK-SEINIDVL----KEAKMFYFSTHSMLERN------MKSTT-- 363 (575)
Q Consensus 311 ~vd~~Ger--------------~~~~~~~ga~~~lt~-~~i~~~~l----~~ad~v~~sg~~l~~~~------~~e~~-- 363 (575)
+-.+.|.+ ++++.....+..+.. +++ .+.+ ..+|.++++|+.++.+. -.+.+
T Consensus 160 fEy~~G~~~~l~~~~~~aPRaNRfI~s~D~~N~~l~i~e~f-~~~l~e~~~~~D~avlSG~q~l~d~y~dg~~~~e~l~~ 238 (453)
T PRK14039 160 FDFREGETFSLYGTRIRAPRENRFIATFDHLNFRLFINPAF-EQYALEHAGEMDGALISGFHLLLETYPDGSTYREKLED 238 (453)
T ss_pred EEeCCCCEEecCCccEecCCCCeEEEecCCCCccceecHHH-HHHHHhhccCCCEEEEechhhhhhhcCCcccHHHHHHH
Confidence 33344432 333332222222221 122 1223 36899999998765221 12222
Q ss_pred -HHHHHHH--hhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCC
Q 008168 364 -LQAIKIS--KQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGI 421 (575)
Q Consensus 364 -~~~l~~a--k~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~ 421 (575)
.+.++.. ...+++|-|..... .+.+-....+..+++++|.+=+|++|+..+...
T Consensus 239 ~~~~i~~l~~~~~~i~iH~E~As~----~~~~i~~~v~~~Ilp~VDSlGmNEqELa~l~~~ 295 (453)
T PRK14039 239 SLAQLKWWKSKNEKLRIHAELGHF----ASKEIANSVFLILAGIVDSIGMNEDELAMLANL 295 (453)
T ss_pred HHHHHHHHHhcCCCceEEEEecCc----ccHHHHHHHHHHhhcccccccCCHHHHHHHHHH
Confidence 3334433 22457898887532 233445667778999999999999999998765
No 82
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=97.18 E-value=0.0084 Score=65.84 Aligned_cols=163 Identities=18% Similarity=0.158 Sum_probs=83.4
Q ss_pred ecCChHHHHHHHHHHcCCCeE-EEEEeCCChHHHHHHHHHHhCCCccceE--------E----EcCCCCceEEEEEEcCC
Q 008168 249 SPGGCTGSAAIALARLGGKVA-FMGKLGDDEYGQAMLYYMNVNNVQTRSV--------R----IDAKRPTAVSQMKIGKR 315 (575)
Q Consensus 249 ~~GG~a~NvA~aLarLG~~v~-lig~VG~D~~G~~l~~~L~~~GIdt~~v--------~----~~~~~~T~~~~i~vd~~ 315 (575)
..||.++-+|..|+.++.... +.+.++. +.+.+.| ..+|-.-.+ . ...+...-+-+|+-.+.
T Consensus 93 r~GGnA~imAn~la~l~~~~Vil~~p~~s----k~~~~l~-~~~i~~P~v~~~~~~l~~~~~a~~~~~~~~iH~IlEy~~ 167 (444)
T PF04587_consen 93 RMGGNAGIMANRLANLEGCPVILYAPILS----KEQAELF-NDNIYVPVVENGELKLIHPREAFKEDDEDDIHLILEYKK 167 (444)
T ss_dssp EEESHHHHHHHHHCCTT-SEEEEE-SS------HHHHTTS-SSSEEEEEEETTEEEEEEGGGS-STT----EEEEEEE-T
T ss_pred ccCchHHHHHHHHHhCCCCEEEEecCcCC----HHHHHhc-ccCcccccccCCcccccCchhccccCCccceEEEEEcCC
Confidence 499999999999998865544 4444654 3445555 333311100 0 00011233334444444
Q ss_pred CC----------eEEEEecCCccccCCc-cccc---hhhhccCcEEEEeccccccc-----ch----HHHHHHHHHHHh-
Q 008168 316 GR----------LRMTCVKPCAEDALTK-SEIN---IDVLKEAKMFYFSTHSMLER-----NM----KSTTLQAIKISK- 371 (575)
Q Consensus 316 Ge----------r~~~~~~~ga~~~lt~-~~i~---~~~l~~ad~v~~sg~~l~~~-----~~----~e~~~~~l~~ak- 371 (575)
|. ++|++.+...+..+.. +++. .+....+|.++++|+-++.. .. .+.+.+.++..+
T Consensus 168 G~~~~~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~~~~~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~l~~ 247 (444)
T PF04587_consen 168 GEKWGDITAPRANRFIVSSDPYNPRLSILEEFFEALEEIAFKPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKLLKS 247 (444)
T ss_dssp TEEETTEE-SS-EEEEEEE-SSGGGTS--HHHHHSHHHHHTT-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHHHH-
T ss_pred CCeecceecCcCceEEEecCCCCccccchHHHHHHHHhhccCCCEEEEeccccchhhccchhHHHHHHHHHHHHHHhccC
Confidence 42 3454443333333432 2221 12234599999999876653 11 223334444455
Q ss_pred hcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhC
Q 008168 372 QFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCG 420 (575)
Q Consensus 372 ~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g 420 (575)
..+++|-|..... .+.+-.+..+..+++++|.|=+|++|+..|+.
T Consensus 248 ~~~~~iH~E~As~----~d~~l~~~i~~~ilp~vDSlGmNEqEL~~l~~ 292 (444)
T PF04587_consen 248 NPDIPIHLELASF----ADEELRKEILEKILPHVDSLGMNEQELANLLS 292 (444)
T ss_dssp HTT-EEEEE--------SSHHHHHHHHHHHGGGSSEEEEEHHHHHHHHH
T ss_pred CCCCceEEEeccc----cCHHHHHHHHHHhhccccccccCHHHHHHHHH
Confidence 6789999997532 23344566777899999999999999998764
No 83
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=97.13 E-value=0.033 Score=60.69 Aligned_cols=163 Identities=15% Similarity=0.130 Sum_probs=91.1
Q ss_pred EecCChHHHHHHHHHHcCCCe--EEEEEeCCChHHHHHHHHHHhC-CCccc------eEEE------cCCCCceEEEEEE
Q 008168 248 RSPGGCTGSAAIALARLGGKV--AFMGKLGDDEYGQAMLYYMNVN-NVQTR------SVRI------DAKRPTAVSQMKI 312 (575)
Q Consensus 248 ~~~GG~a~NvA~aLarLG~~v--~lig~VG~D~~G~~l~~~L~~~-GIdt~------~v~~------~~~~~T~~~~i~v 312 (575)
...||.+.-+|..|+++|..+ .+.+.++. .....|... +|-.- .+.. .++.++-+-+|+-
T Consensus 86 ~rmGGqAgimAn~la~lg~~~vI~~~~~ls~-----~qa~lf~~~~ni~~p~~e~g~l~l~~~~e~~~e~d~~~IH~I~E 160 (446)
T TIGR02045 86 ERMGGQAGIISNLLGRLGLKKVIAYTPFLSK-----RQAEMFVATGNILYPVVENGKLVLKPPGEAYREGDPSKVNRIFE 160 (446)
T ss_pred eeeCCHHHHHHHHHHhcCCceEEEeCCCCCH-----HHHHHhCCcCceeeccccCCceeeccchhccCCCCCCceEEEEE
Confidence 579999999999999999885 34444443 334445442 12110 0000 0112222444444
Q ss_pred cCCCCe--------------EEEEecCCccccCCc-cccc---hhhhccCcEEEEecccccccc---------hHHHHHH
Q 008168 313 GKRGRL--------------RMTCVKPCAEDALTK-SEIN---IDVLKEAKMFYFSTHSMLERN---------MKSTTLQ 365 (575)
Q Consensus 313 d~~Ger--------------~~~~~~~ga~~~lt~-~~i~---~~~l~~ad~v~~sg~~l~~~~---------~~e~~~~ 365 (575)
.+.|.+ ++++.+...+..+.. +++. .+.-..+|.++++|+.++... ..+...+
T Consensus 161 y~~G~~~~lg~~~~~aPRaNRfI~s~D~~n~~l~~~~~l~~~~~~i~~~~d~~vlSG~q~m~~~y~dg~~~~~~~er~~~ 240 (446)
T TIGR02045 161 FRKGTNFKLGGETIKVPRSGRFIVSSRPESLRIETKDQLRKFLPEIGEPVDGAILSGYQGIKEEYSDGKTAKYYLERAKE 240 (446)
T ss_pred eCCCCeeecCCceEeccCCCeEEEecCCccccceecHHHHHhhhhhhhcccEEEEEchhhhhhhccCCccHhHHHHHHHH
Confidence 444432 233222222212211 1111 233356899999998665432 1333444
Q ss_pred HHHHHh-hcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhh
Q 008168 366 AIKISK-QFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 366 ~l~~ak-~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~ 419 (575)
.++..+ ..+++|-|..... .+.+-....+..+++++|.+-+|++|+..++
T Consensus 241 ~i~~L~~~~~i~iH~E~As~----~~~~l~~~i~~~ilp~vDSlGMNE~ELa~ll 291 (446)
T TIGR02045 241 DIELLKKNKDLKIHVEFASI----QNREIRKKVVTNIFPHVDSVGMDEAEIANVL 291 (446)
T ss_pred HHHHHhhCCCCeEEEEeccc----ccHHHHHHHHHhhccccccccCCHHHHHHHH
Confidence 555543 3678899987532 2334455667789999999999999999887
No 84
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=97.08 E-value=0.051 Score=54.90 Aligned_cols=154 Identities=17% Similarity=0.131 Sum_probs=84.7
Q ss_pred hhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhh--ccCeEeecCHHHHH
Q 008168 339 DVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAW--TLADVIEVTKQELE 416 (575)
Q Consensus 339 ~~l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll--~~aDIl~~N~~Ea~ 416 (575)
+..+-++.++++--. +++...+.+..+++.+.+.|++++|||..... ..-..+...+++ .+++||+.|..|..
T Consensus 45 e~~~~a~al~iNiGT-l~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGa----s~~R~~~~~~LL~~~~~~vIrGN~sEI~ 119 (246)
T PF02110_consen 45 EFASIADALVINIGT-LTDERIEAMKKAAKAANELGIPVVLDPVGVGA----SKFRTEFALELLNNYKPTVIRGNASEIA 119 (246)
T ss_dssp HHHHCTSEEEEESTT-SSHHHHHHHHHHHHHHHHTT--EEEE-TTBTT----BHHHHHHHHHHHCHS--SEEEEEHHHHH
T ss_pred HHHHHcCEEEEECCC-CCHhHHHHHHHHHHHHHHcCCCEEEeCcccCC----cHHHHHHHHHHHHhCCCcEEEeCHHHHH
Confidence 455678888888222 23345678888999999999999999964331 111245566777 57899999999999
Q ss_pred HhhCCCCCCc-ccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChh
Q 008168 417 FLCGIKPTEE-FDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASG 495 (575)
Q Consensus 417 ~L~g~~~~~~-~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAG 495 (575)
.|.|...... -|......+ ..+.++.+.++--..|++| |+.-.+ .++.....+.. ..+ ..-..||.|
T Consensus 120 aLag~~~~~kGVDs~~~~~~-----~~~~a~~lA~k~~~vVvvT-G~~D~I-sdg~~~~~i~n--G~~---~l~~itGtG 187 (246)
T PF02110_consen 120 ALAGEDSKAKGVDSGDSDED-----AIEAAKQLAQKYNCVVVVT-GEVDYI-SDGNRVYRIPN--GSP---LLSKITGTG 187 (246)
T ss_dssp HHHTCCCCSCSSSSSCGSHH-----HHHHHHHHHHHTTSEEEEE-SSSEEE-EESSCEEEECS--SSG---GGGGSTTHH
T ss_pred HHhCcCCCCCCcCcCCcchH-----HHHHHHHHHHhcCCEEEEe-cCCcEE-ECCCeEEEeCC--CCh---Hhcceeccc
Confidence 9998653211 111100000 2355566655443455555 554322 23322222221 011 134568999
Q ss_pred HHHHHHHHHHHHcC
Q 008168 496 DGIVAGIMRMLTVQ 509 (575)
Q Consensus 496 DaF~AGfl~~L~~g 509 (575)
++..+-+.+.+...
T Consensus 188 C~lgaliaaf~av~ 201 (246)
T PF02110_consen 188 CMLGALIAAFLAVA 201 (246)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHhcc
Confidence 97666555555554
No 85
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=96.99 E-value=0.078 Score=57.86 Aligned_cols=245 Identities=12% Similarity=0.082 Sum_probs=127.3
Q ss_pred EEecCChHHHHHHHHHH-cCCCeEEEEEeCCChHHHHHHHHHHhCCCccceE------EEcC-----CCCceEEEEEEcC
Q 008168 247 IRSPGGCTGSAAIALAR-LGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSV------RIDA-----KRPTAVSQMKIGK 314 (575)
Q Consensus 247 ~~~~GG~a~NvA~aLar-LG~~v~lig~VG~D~~G~~l~~~L~~~GIdt~~v------~~~~-----~~~T~~~~i~vd~ 314 (575)
....||.+.-+|..|+. .|.+| ++.++.. .+...+.+...+|-.-.+ ...+ +...-+-+|+-.+
T Consensus 106 ~~rmGGnAgimAn~la~~~g~~V--ia~~~~l--sk~qa~lf~~~~I~~p~~~~~~l~l~~p~e~~~~~~d~IH~I~Ey~ 181 (453)
T PRK14038 106 ELRMGGQVGIMANLLGGVYGVPV--IAHVPQL--SKLQASLFLDGPIYVPTFEGGELKLVHPREFVGDEENCIHYIYEFP 181 (453)
T ss_pred eEEeCChHHHHHHHHHhhcCCce--EEECCCc--chhhHhhccCCCEEeccccCCcceeccchhcccCCCCccEEEEEeC
Confidence 57899999999999985 56676 6666643 122122232222211000 0000 1122333444444
Q ss_pred CCCe----------EEEEecCCccccCC-ccccc---hhhhccCcEEEEecccccccchH-HH---HHHHHHHHhhcCCE
Q 008168 315 RGRL----------RMTCVKPCAEDALT-KSEIN---IDVLKEAKMFYFSTHSMLERNMK-ST---TLQAIKISKQFGGI 376 (575)
Q Consensus 315 ~Ger----------~~~~~~~ga~~~lt-~~~i~---~~~l~~ad~v~~sg~~l~~~~~~-e~---~~~~l~~ak~~G~~ 376 (575)
.|.+ ++++.+...+..+. .+++. .+....+|.++++|+.++..... +. +.+.+...+..+++
T Consensus 182 ~G~~~~~~~aPRaNRfI~s~D~~N~~l~~~eef~~~l~ei~~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~~i~ 261 (453)
T PRK14038 182 RGFRVFDFEAPRENRFIGAADDYNPNLYIRPEFRERFEEIAKKAELAIISGLQALTEENYREPFETVREHLKVLNERGIP 261 (453)
T ss_pred CCCEEeeeEcCCCceEEEecCCCCcceeecHHHHHHHHhhccCCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcCCce
Confidence 4443 33333222222221 11221 13345799999999876554322 22 23333333446788
Q ss_pred EEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCC-------cHHHHHHHh
Q 008168 377 IFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHY-------EPEVIAPLW 449 (575)
Q Consensus 377 Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~-------~~e~~~~l~ 449 (575)
|-|...... + ...+..+..+++++|-+-+|++|+..++..-.... ..+.+..+ ..+++..|+
T Consensus 262 iH~EfAs~~----d-~~~r~~i~~ilp~vDSlGmNE~ELa~ll~~lg~~~------l~~~i~~~~~~~~~~v~e~~~~L~ 330 (453)
T PRK14038 262 AHLEFAFTP----D-ETVREEILGLLGKFYSVGLNEVELASIMEVMGEKT------LAEKLLAKDPVDPIAVTEAMLKLA 330 (453)
T ss_pred EEEEeeccc----h-HHHHHHHHhhCccccccccCHHHHHHHHHHhccch------hhhhhhhcCccCHHHHHHHHHHHH
Confidence 888865322 1 22344455799999999999999998875322110 00000001 124555555
Q ss_pred h-cCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHH
Q 008168 450 H-ENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAID 528 (575)
Q Consensus 450 ~-~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~a 528 (575)
+ .|+..+.|.. .+ ++-. +. .. .+ ..+++|+.+|+.
T Consensus 331 ~~~gleri~vHT--~~----------y~l~-----i~----~~----------------~~-------~~~~~aL~f~~~ 366 (453)
T PRK14038 331 EKTGVKRIHFHT--YG----------YYLA-----LT----KY----------------RG-------EHVRDALLFAAL 366 (453)
T ss_pred HHcCCCEEEEEe--cc----------eeEE-----Ee----cC----------------CH-------HHHHHHHHHHHH
Confidence 4 3766655531 11 1111 10 11 34 679999999999
Q ss_pred HHHHHhcccccCCCCCCHHHHHHhhC
Q 008168 529 CGVRDQWSQARTLGYPPKEGMEEEVE 554 (575)
Q Consensus 529 aAA~~v~~~G~~~g~pt~eeve~~l~ 554 (575)
+||.... .|. +.+.++++.-+.
T Consensus 367 ~AaarA~-~G~---i~~~~d~~~~l~ 388 (453)
T PRK14038 367 AAAAKAM-LGN---IEKIDDVRKALD 388 (453)
T ss_pred HHHHHHH-cCC---CCCHHHHHHHhc
Confidence 9987654 444 466777766554
No 86
>PRK10565 putative carbohydrate kinase; Provisional
Probab=96.95 E-value=0.027 Score=63.06 Aligned_cols=149 Identities=14% Similarity=0.027 Sum_probs=84.8
Q ss_pred hccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHh--hccCeEeecCHHHHHHh
Q 008168 341 LKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQA--WTLADVIEVTKQELEFL 418 (575)
Q Consensus 341 l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~l--l~~aDIl~~N~~Ea~~L 418 (575)
++.++.+.++.-...+ +....+++.+.+.++++++|+.. + ..+... .....||+||.-|+..|
T Consensus 318 ~~~~~a~viGpGlg~~----~~~~~~~~~~~~~~~P~VLDAda---L--------~ll~~~~~~~~~~VLTPh~gE~~rL 382 (508)
T PRK10565 318 LEWADVVVIGPGLGQQ----EWGKKALQKVENFRKPMLWDADA---L--------NLLAINPDKRHNRVITPHPGEAARL 382 (508)
T ss_pred hhcCCEEEEeCCCCCC----HHHHHHHHHHHhcCCCEEEEchH---H--------HHHhhCccccCCeEECCCHHHHHHH
Confidence 4667888887321111 22244456667778999999752 2 112110 11257999999999999
Q ss_pred hCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHH
Q 008168 419 CGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGI 498 (575)
Q Consensus 419 ~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF 498 (575)
++........ ...+.++.+.+....+||+ -|..- +++++++..++... .-+ -.-++|.||.+
T Consensus 383 ~~~~~~~v~~-----------~~~~~a~~~a~~~~~~vvl-KG~~~-iI~~~~~~~~~~~~---G~~--~ma~~GsGDvL 444 (508)
T PRK10565 383 LGCSVAEIES-----------DRLLSARRLVKRYGGVVVL-KGAGT-VIAAEPDALAIIDV---GNA--GMASGGMGDVL 444 (508)
T ss_pred hCCChhhhhh-----------hHHHHHHHHHHHhCCEEEE-eCCCc-EEEcCCceEEEECC---CCC--CCCCCChHHHH
Confidence 9854322110 0123455555443335555 35432 44443333333221 111 35569999998
Q ss_pred HHHHHHHHHcCCCCCCCchhHHHHHHHHHHH
Q 008168 499 VAGIMRMLTVQPHLITDKGYLVRTIKYAIDC 529 (575)
Q Consensus 499 ~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aa 529 (575)
+|.+.+.|+++ .++.+|+..|+..
T Consensus 445 aGiIaalla~g-------~~~~~Aa~~a~~l 468 (508)
T PRK10565 445 SGIIGALLGQK-------LSPYDAACAGCVA 468 (508)
T ss_pred HHHHHHHHHcC-------CCHHHHHHHHHHH
Confidence 88777777777 7788887777643
No 87
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=96.81 E-value=0.016 Score=58.09 Aligned_cols=172 Identities=13% Similarity=0.111 Sum_probs=100.1
Q ss_pred hhhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhc--cCeEeecCHHHH
Q 008168 338 IDVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT--LADVIEVTKQEL 415 (575)
Q Consensus 338 ~~~l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~--~aDIl~~N~~Ea 415 (575)
...+..-.+++++.--..++.....+..++++++.+++++++|. ..+|-- .+....++. ..-|+.||.-|+
T Consensus 96 ~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDa---DGL~Lv----~q~~e~l~~~~~~viLTPNvvEF 168 (306)
T KOG3974|consen 96 EKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDA---DGLWLV----EQLPERLIGGYPKVILTPNVVEF 168 (306)
T ss_pred HHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcC---CceEeh----hhchhhhhccCceeeeCCcHHHH
Confidence 34677778888875434577778889999999999999999995 456641 111111221 236889999999
Q ss_pred HHhhCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChh
Q 008168 416 EFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASG 495 (575)
Q Consensus 416 ~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAG 495 (575)
..|++....... ....+..|.+.-....||--|+.-.+ +.++....+-..+.- ..-.-|-|
T Consensus 169 kRLcd~~l~~~d-------------~~~~~~~L~~~l~nv~vvqKG~~D~i-ls~~~ev~~~s~eGs-----~kRcGGQG 229 (306)
T KOG3974|consen 169 KRLCDAELDKVD-------------SHSQMQHLAAELMNVTVVQKGESDKI-LSPDSEVRVCSTEGS-----LKRCGGQG 229 (306)
T ss_pred HHHHHHhhcccc-------------chHHHHHHHHHhcCeEEEEecCCcee-eCCCCeeEEccCCCC-----ccccCCCc
Confidence 999986432110 23445555444345777777877663 334333333221111 23345789
Q ss_pred HHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcccc
Q 008168 496 DGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQA 538 (575)
Q Consensus 496 DaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G 538 (575)
|..+|.+...++-.. +.. .....++-+|..++++.+...|
T Consensus 230 DiLaGsla~fl~w~k-~~~--~e~~~~~~~a~~a~s~~vr~a~ 269 (306)
T KOG3974|consen 230 DILAGSLATFLSWAK-LLS--GEQDSAAFLAAVAGSIMVRRAG 269 (306)
T ss_pred chhhhHHHHHHHHHH-hcc--CCccchhhhhhhhhHHHHHHHH
Confidence 998886654433210 111 1233556666666555554433
No 88
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=96.36 E-value=0.12 Score=52.35 Aligned_cols=152 Identities=14% Similarity=0.068 Sum_probs=86.2
Q ss_pred hhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHH---hhccCeEeecCHHHH
Q 008168 339 DVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQ---AWTLADVIEVTKQEL 415 (575)
Q Consensus 339 ~~l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~---ll~~aDIl~~N~~Ea 415 (575)
..++.++.+.++.-...++ ...++++...+...++++|.. .++ .+.. .....-||+|+.-|+
T Consensus 63 ~~~~~~~av~iGPGlg~~~----~~~~~~~~~~~~~~p~VlDAD---aL~--------~l~~~~~~~~~~~IlTPH~gE~ 127 (242)
T PF01256_consen 63 ELLEKADAVVIGPGLGRDE----ETEELLEELLESDKPLVLDAD---ALN--------LLAENPKKRNAPVILTPHPGEF 127 (242)
T ss_dssp HHHCH-SEEEE-TT-SSSH----HHHHHHHHHHHHCSTEEEECH---HHH--------CHHHCCCCSSSCEEEE-BHHHH
T ss_pred hhhccCCEEEeecCCCCch----hhHHHHHHHHhhcceEEEehH---HHH--------HHHhccccCCCCEEECCCHHHH
Confidence 4567889999883211221 223344554555677999953 222 2222 345567999999999
Q ss_pred HHhhCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChh
Q 008168 416 EFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASG 495 (575)
Q Consensus 416 ~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAG 495 (575)
..|++...... ....+.++++.+.. +.+||--|..-. ++.+++..++-... ++ -.-+-|.|
T Consensus 128 ~rL~~~~~~~~------------~~~~~~a~~~a~~~-~~~vvLKG~~t~-I~~p~~~~~~n~~g----n~-~la~gGsG 188 (242)
T PF01256_consen 128 ARLLGKSVEIQ------------EDRIEAAREFAKEY-GAVVVLKGAVTI-IASPGGRVYVNPTG----NP-GLATGGSG 188 (242)
T ss_dssp HHHHTTTCHHC------------CSHHHHHHHHHHHH-TSEEEEESTSSE-EEEETSEEEEE--------G-GGSSTTHH
T ss_pred HHHhCCcccch------------hhHHHHHHHHHhhc-CcEEEEeCCCcE-EEecCcceeEeCCC----CC-CCCCCCcc
Confidence 99999764200 01235556555432 234444466554 44434343332211 11 46678999
Q ss_pred HHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHH
Q 008168 496 DGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGV 531 (575)
Q Consensus 496 DaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA 531 (575)
|.++|-+..-++++ .++.+|+..|+..=+
T Consensus 189 DvLaGii~~llaq~-------~~~~~Aa~~av~lHg 217 (242)
T PF01256_consen 189 DVLAGIIAGLLAQG-------YDPFEAACLAVYLHG 217 (242)
T ss_dssp HHHHHHHHHHHHHT-------SSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcc-------CCHHHHHHHHHHHHH
Confidence 99887777777888 788888877765433
No 89
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=96.32 E-value=0.2 Score=50.62 Aligned_cols=79 Identities=16% Similarity=0.098 Sum_probs=55.3
Q ss_pred hhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhcc--CeEeecCHHHHH
Q 008168 339 DVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTL--ADVIEVTKQELE 416 (575)
Q Consensus 339 ~~l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~--aDIl~~N~~Ea~ 416 (575)
+..+-++.+.++--. ++....+.+..+++.+.+.|.|+++||...... ...++...++|.+ .++|..|..|..
T Consensus 51 e~~kia~AL~INIGT-L~~~~~~~m~~A~~~An~~~~PvvLDPVgvgAt----~~R~~~~~~LL~~~~~~~IrGN~sEI~ 125 (265)
T COG2145 51 EFAKIADALLINIGT-LSAERIQAMRAAIKAANESGKPVVLDPVGVGAT----KFRTKFALELLAEVKPAAIRGNASEIA 125 (265)
T ss_pred HHHHhccceEEeecc-CChHHHHHHHHHHHHHHhcCCCEEecCccCCch----HHHHHHHHHHHHhcCCcEEeccHHHHH
Confidence 445556667776222 334467788999999999999999999643321 1123455666654 699999999999
Q ss_pred HhhCCC
Q 008168 417 FLCGIK 422 (575)
Q Consensus 417 ~L~g~~ 422 (575)
.|.|..
T Consensus 126 ~Lag~~ 131 (265)
T COG2145 126 ALAGEA 131 (265)
T ss_pred HHhccc
Confidence 998754
No 90
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=95.95 E-value=0.062 Score=58.87 Aligned_cols=167 Identities=16% Similarity=0.072 Sum_probs=92.1
Q ss_pred ceEEecCChHHHHHHHHHHcCC-CeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCC------
Q 008168 245 KFIRSPGGCTGSAAIALARLGG-KVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGR------ 317 (575)
Q Consensus 245 ~~~~~~GG~a~NvA~aLarLG~-~v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ge------ 317 (575)
....+.||.+.-+|..|+.+|. +|.+.+.+... .....+...+|-.-.... .....-+-+|+-.+.|.
T Consensus 100 ~~~~~mGGnAgimAn~la~~g~~~Vil~~p~~~k----~~~~L~~d~~i~~p~~e~-~~~~d~IHlIlEy~~G~~~~~~~ 174 (445)
T cd01938 100 WDELRMGGNAGLMANRLAGEGDLKVLLGVPQSSK----LQAELFLDGPIVVPTFEN-LIEEDEIHLILEYPRGESWGDFV 174 (445)
T ss_pred CceEEeCChHHHHHHHHHhcCCceEEEecCCCcH----HHHHhCCCCCeeeccccc-CCCCCccEEEEEcCCCCEecceE
Confidence 3457899999999999999999 88777776543 222222221221110000 01123333444444443
Q ss_pred ----eEEEEecCCccccCCccccchhhhcc-CcEEEEecccccccch--HHHHHHHHHHHhh------cCCEEEEcCCCC
Q 008168 318 ----LRMTCVKPCAEDALTKSEINIDVLKE-AKMFYFSTHSMLERNM--KSTTLQAIKISKQ------FGGIIFYDVNLP 384 (575)
Q Consensus 318 ----r~~~~~~~ga~~~lt~~~i~~~~l~~-ad~v~~sg~~l~~~~~--~e~~~~~l~~ak~------~G~~Vv~D~~~~ 384 (575)
++|++.+...+.....+++-....+. .|.++++|+-++.... .....+.++.+++ ..++|-|.....
T Consensus 175 aPraNRfI~~~d~~n~l~~~ee~~~~i~~~~pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~As~ 254 (445)
T cd01938 175 APRANRFIFHDDDNNPMLMREEFFSSILEFQPDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIHLELAST 254 (445)
T ss_pred cCCCCeEEEecCCcchhhhhHHHHHHHhhcCCCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEEEEeccc
Confidence 33443332222211112221233333 8999999987665421 1122222222221 347788886532
Q ss_pred CccccCchhHHHHHHHhhccCeEeecCHHHHHHhhC
Q 008168 385 LPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCG 420 (575)
Q Consensus 385 ~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g 420 (575)
.+.+-....+..+++++|-|=+|++|+..|+.
T Consensus 255 ----~d~~l~~~i~~~ilp~VDSlGmNEqEL~~l~~ 286 (445)
T cd01938 255 ----VDEELREEILHEVVPYVDSLGLNEQELANLLQ 286 (445)
T ss_pred ----ccHHHHHHHHHHhcccccccccCHHHHHHHHH
Confidence 23344566777899999999999999998874
No 91
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=94.70 E-value=0.83 Score=47.31 Aligned_cols=153 Identities=13% Similarity=0.017 Sum_probs=76.9
Q ss_pred hccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhh-ccCeEeecCHHHHHHhh
Q 008168 341 LKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAW-TLADVIEVTKQELEFLC 419 (575)
Q Consensus 341 l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll-~~aDIl~~N~~Ea~~L~ 419 (575)
...++.|.++.-...+....+.+.+++.... .++++|...-..+ .....+. ...-|+.|+.-|+..|+
T Consensus 99 ~~~~~avviGpGlG~~~~~~~~~~~~l~~~~---~p~ViDADaL~~l--------a~~~~~~~~~~~VlTPH~gEf~rL~ 167 (284)
T COG0063 99 VERADAVVIGPGLGRDAEGQEALKELLSSDL---KPLVLDADALNLL--------AELPDLLDERKVVLTPHPGEFARLL 167 (284)
T ss_pred hccCCEEEECCCCCCCHHHHHHHHHHHhccC---CCEEEeCcHHHHH--------HhCcccccCCcEEECCCHHHHHHhc
Confidence 4567888887322223333445555554433 7899996521100 0111122 12378999999999999
Q ss_pred CCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHH
Q 008168 420 GIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIV 499 (575)
Q Consensus 420 g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~ 499 (575)
+.+..+.... ..+.++.+.++. ..+||--|..-++ .+++...++-.. -++ -.-+-|.||+.+
T Consensus 168 g~~~~~~~~~-----------r~~~a~~~a~~~-~~vvVLKG~~tvI-~~~~g~~~~n~~----G~~-~ma~GGtGDvLa 229 (284)
T COG0063 168 GTEVDEIEVD-----------RLEAARELAAKY-GAVVVLKGAVTVI-ADPDGEVFVNPT----GNP-GMATGGTGDVLA 229 (284)
T ss_pred CCcccccccc-----------hHHHHHHHHHHc-CCEEEEeCCCCEE-EcCCCcEEEcCC----CCH-HhccCcchHHHH
Confidence 8644332110 135566665543 3444444554333 333323333211 111 234568999865
Q ss_pred HHHHHHHHcCCCCCCCchhHHHHHHHHHH
Q 008168 500 AGIMRMLTVQPHLITDKGYLVRTIKYAID 528 (575)
Q Consensus 500 AGfl~~L~~g~~~~~d~~sl~eAl~~A~a 528 (575)
|-+.+-|+++ . .+..+|+..|+.
T Consensus 230 Gii~alLAq~-~-----~~~~~Aa~~g~~ 252 (284)
T COG0063 230 GIIGALLAQG-P-----ADPLEAAAAGAW 252 (284)
T ss_pred HHHHHHHhCC-C-----CCHHHHHHHHHH
Confidence 5444444554 1 145565555443
No 92
>PLN02967 kinase
Probab=82.03 E-value=1.7 Score=49.48 Aligned_cols=32 Identities=6% Similarity=-0.039 Sum_probs=22.4
Q ss_pred eEEEEEeCCChHHHHHHHHHHhCCCccceEEEcC
Q 008168 268 VAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDA 301 (575)
Q Consensus 268 v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~ 301 (575)
..|...+|+. +.-+.-.|.+.|+++.++-...
T Consensus 236 ~~~~~~~GGa--~aNVAvaLARLG~~v~fIg~VG 267 (581)
T PLN02967 236 EKFVRAPGGS--AGGVAIALASLGGKVAFMGKLG 267 (581)
T ss_pred cceeeecCcH--HHHHHHHHHHCCCCEEEEEEeC
Confidence 4455667775 4456677888999998877654
No 93
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=79.30 E-value=14 Score=36.63 Aligned_cols=68 Identities=7% Similarity=0.010 Sum_probs=46.6
Q ss_pred CcEEEEecc-cccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEe-----ecCHHHHHH
Q 008168 344 AKMFYFSTH-SMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVI-----EVTKQELEF 417 (575)
Q Consensus 344 ad~v~~sg~-~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl-----~~N~~Ea~~ 417 (575)
+.-|.++|- +++ ..+.+.++++.+++.|+.+.+|.|...+ .+.+..+++++|.+ .++.+....
T Consensus 39 ggGVt~SGGEPll---q~~fl~~l~~~~k~~gi~~~leTnG~~~--------~~~~~~l~~~~D~~l~DiK~~d~~~~~~ 107 (213)
T PRK10076 39 GGGVTLSGGEVLM---QAEFATRFLQRLRLWGVSCAIETAGDAP--------ASKLLPLAKLCDEVLFDLKIMDATQARD 107 (213)
T ss_pred CCEEEEeCchHHc---CHHHHHHHHHHHHHcCCCEEEECCCCCC--------HHHHHHHHHhcCEEEEeeccCCHHHHHH
Confidence 356777763 332 4577889999999999999999886443 23455666666655 446666778
Q ss_pred hhCCC
Q 008168 418 LCGIK 422 (575)
Q Consensus 418 L~g~~ 422 (575)
++|..
T Consensus 108 ~tG~~ 112 (213)
T PRK10076 108 VVKMN 112 (213)
T ss_pred HHCCC
Confidence 88854
No 94
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=72.27 E-value=9.5 Score=40.31 Aligned_cols=165 Identities=16% Similarity=0.137 Sum_probs=83.6
Q ss_pred CceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEe
Q 008168 244 EKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCV 323 (575)
Q Consensus 244 ~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~ 323 (575)
..+.-+.||.+.-.|.-...-| .+.++|..|.-...-.+-...+-+| -.+..+ -+-+|+-.+.|+.-=-++
T Consensus 136 ~R~~~~mGGNA~LMA~R~~~~~-~~~LlG~~~~R~~~~L~P~~~R~~~-----~~I~~D---diHlILEYK~Gd~~G~~V 206 (478)
T KOG4184|consen 136 ERINWYMGGNAPLMAVRFFMEG-AQVLLGAHMSRKLRPLLPKEIRLAG-----DEIPND---DIHLILEYKAGDKWGPYV 206 (478)
T ss_pred hhhhhhccCCchHHHHHHHhcc-ceeeecccccchhccccchhhhccc-----CcCcCC---ceEEEEEeccCCcccccc
Confidence 3455688999888887777666 7899999987533222222222111 111111 122333334443211112
Q ss_pred cCCccccC------Cccccc----hhhh--ccCcEEEEecccccccchHHHHHHHHHHHhh------cCCEEEEcCCCCC
Q 008168 324 KPCAEDAL------TKSEIN----IDVL--KEAKMFYFSTHSMLERNMKSTTLQAIKISKQ------FGGIIFYDVNLPL 385 (575)
Q Consensus 324 ~~ga~~~l------t~~~i~----~~~l--~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~------~G~~Vv~D~~~~~ 385 (575)
.+.++..+ ++...- .+.+ -..|+|+++|.-+++-...+.-.+-++..+. .|+++-|.+....
T Consensus 207 AP~anR~I~~~D~~n~~m~~~E~f~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlElaS~~ 286 (478)
T KOG4184|consen 207 APRANRYILHNDRNNPHMRAVEQFTDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLELASMT 286 (478)
T ss_pred cccccceeeecCCCChHHHHHHHHHHHHHHhCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhHhHHH
Confidence 22222222 211100 1222 2579999999765442222221111222221 4667776654211
Q ss_pred ccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCC
Q 008168 386 PLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGI 421 (575)
Q Consensus 386 ~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~ 421 (575)
+..-..+.+..+++++|=+=+|++|+..|...
T Consensus 287 ----~~~l~~~i~h~VlPyVdSLGlNEQEL~fL~q~ 318 (478)
T KOG4184|consen 287 ----NRELMSSIVHQVLPYVDSLGLNEQELLFLTQS 318 (478)
T ss_pred ----HHHHHHHHHHHhhhhccccCCCHHHHHHHHHH
Confidence 11223455667899999999999999988743
No 95
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]
Probab=70.22 E-value=1.4e+02 Score=32.27 Aligned_cols=79 Identities=13% Similarity=0.055 Sum_probs=52.4
Q ss_pred hhccCcEEEEeccccccc----ch-----HHHHHHHHHHHhh-cCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEee
Q 008168 340 VLKEAKMFYFSTHSMLER----NM-----KSTTLQAIKISKQ-FGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIE 409 (575)
Q Consensus 340 ~l~~ad~v~~sg~~l~~~----~~-----~e~~~~~l~~ak~-~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~ 409 (575)
.....|..+++|+.++.. .. .+...+-++..++ .++++-+.....+ +....+..+..++++++=+=
T Consensus 222 i~~~vDgaiiSGyq~l~eey~dg~t~~~yle~s~e~i~~lk~~~~irvHlEfas~~----d~~irk~i~~~il~~v~SvG 297 (466)
T COG4809 222 IAKEVDGAIISGYQGLKEEYSDGSTYKYYLERSREDIKALKDRENIRVHLEFASIQ----DRKIRKEILTNILSIVYSVG 297 (466)
T ss_pred HhhhcceeeeechhhhhhhcCCCCcHHHHHHHHHHHHHHHhccccceEEEEecccc----cHHHHHHHHHHHHhhhhhcC
Confidence 456689999999744311 11 2223344555555 6788888865322 34455677778999999999
Q ss_pred cCHHHHHHhhCCC
Q 008168 410 VTKQELEFLCGIK 422 (575)
Q Consensus 410 ~N~~Ea~~L~g~~ 422 (575)
+|+.|+..++..-
T Consensus 298 ldE~ElA~vl~vl 310 (466)
T COG4809 298 LDEVELANVLNVL 310 (466)
T ss_pred CCHHHHHHHHHhh
Confidence 9999998876543
No 96
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=64.88 E-value=10 Score=44.83 Aligned_cols=22 Identities=18% Similarity=0.045 Sum_probs=16.5
Q ss_pred cccCccChhHHHHHHHHHHHHcC
Q 008168 487 FTSDMSASGDGIVAGIMRMLTVQ 509 (575)
Q Consensus 487 ~vVDttGAGDaF~AGfl~~L~~g 509 (575)
+||| |=|=-+=.|=|+--|.+|
T Consensus 540 kvvD-tp~HaSQSArF~kHldRG 561 (982)
T PF03154_consen 540 KVVD-TPSHASQSARFNKHLDRG 561 (982)
T ss_pred cccc-chhhhhHHHHHHHHhhcc
Confidence 4677 567777778888888877
No 97
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=61.97 E-value=4.3 Score=47.40 Aligned_cols=7 Identities=43% Similarity=0.676 Sum_probs=2.7
Q ss_pred cCCCccc
Q 008168 59 LSGSEAV 65 (575)
Q Consensus 59 ~~~~~~~ 65 (575)
|+.|+++
T Consensus 1276 P~g~eVI 1282 (1516)
T KOG1832|consen 1276 PSGNEVI 1282 (1516)
T ss_pred CCCceEE
Confidence 3333333
No 98
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=59.80 E-value=2.4e+02 Score=30.00 Aligned_cols=94 Identities=16% Similarity=0.213 Sum_probs=52.7
Q ss_pred CCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccc--cchhhhcc
Q 008168 266 GKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSE--INIDVLKE 343 (575)
Q Consensus 266 ~~v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~--i~~~~l~~ 343 (575)
.+|.++|.-|. .|+.+++.|.+.+....-+..... ...-|+....+.... +...+ .+...+++
T Consensus 2 ~~VavvGATG~--VG~~~~~~L~e~~f~~~~~~~~AS---------~rSaG~~~~~f~~~~----~~v~~~~~~~~~~~~ 66 (334)
T COG0136 2 LNVAVLGATGA--VGQVLLELLEERHFPFEELVLLAS---------ARSAGKKYIEFGGKS----IGVPEDAADEFVFSD 66 (334)
T ss_pred cEEEEEeccch--HHHHHHHHHHhcCCCcceEEEEec---------ccccCCccccccCcc----ccCcccccccccccc
Confidence 46778888775 899999999987655442222111 112233312122111 11111 22344568
Q ss_pred CcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCC
Q 008168 344 AKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVN 382 (575)
Q Consensus 344 ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~ 382 (575)
+|+++++. ..+...++...+.+.| .+++|..
T Consensus 67 ~Divf~~a-------g~~~s~~~~p~~~~~G-~~VIdns 97 (334)
T COG0136 67 VDIVFFAA-------GGSVSKEVEPKAAEAG-CVVIDNS 97 (334)
T ss_pred CCEEEEeC-------chHHHHHHHHHHHHcC-CEEEeCC
Confidence 99998873 2234467778888888 4567754
No 99
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=55.51 E-value=13 Score=41.57 Aligned_cols=32 Identities=28% Similarity=0.252 Sum_probs=24.0
Q ss_pred hccccccCCCcccccccCCCCccccccccccccccCCC
Q 008168 53 ASAQDELSGSEAVVKKRTPLTTKRATFKQTRKKSETDA 90 (575)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (575)
.+...-.+.||++||+. +|++ || ||||.++.+
T Consensus 47 ~~~~~~~~~~~~~~~~~----~~~~-~~-~~~~~~~~~ 78 (496)
T PLN02543 47 RSRPGRCSTNGAAVPES----PKPS-RR-GRKKKPTSS 78 (496)
T ss_pred cCcccccCCCcccCCCC----CCcc-cc-ccccCCCCC
Confidence 45556678899999997 7766 45 888886655
No 100
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=53.58 E-value=60 Score=35.77 Aligned_cols=126 Identities=13% Similarity=0.070 Sum_probs=66.1
Q ss_pred ceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHH---HHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEE
Q 008168 245 KFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYG---QAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMT 321 (575)
Q Consensus 245 ~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G---~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~ 321 (575)
......+|.+++.+..++-++..-.+|. ..+.|+ ..+...+...|+++.++..
T Consensus 78 ~av~~~SG~aAi~~al~all~~GD~VI~--~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~---------------------- 133 (432)
T PRK06702 78 GAVATASGQAAIMLAVLNICSSGDHLLC--SSTVYGGTFNLFGVSLRKLGIDVTFFNP---------------------- 133 (432)
T ss_pred cEEEECCHHHHHHHHHHHhcCCCCEEEE--CCCchHHHHHHHHHHHHHCCCEEEEECC----------------------
Confidence 3456778888877666665543222322 233354 4444556778886554410
Q ss_pred EecCCccccCCccccchhhhccCcEEEEecccccccc-hHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHH
Q 008168 322 CVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERN-MKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQ 400 (575)
Q Consensus 322 ~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~-~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ 400 (575)
.++++.+....-.+.++|++.... +|. ..-.+.++.+.|+++|+++++|-.+..++. ...
T Consensus 134 --------~~d~~~l~~~I~~~Tk~I~~e~pg--nP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~~---------~~p 194 (432)
T PRK06702 134 --------NLTADEIVALANDKTKLVYAESLG--NPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYL---------CQA 194 (432)
T ss_pred --------CCCHHHHHHhCCcCCeEEEEEcCC--CccccccCHHHHHHHHHHcCCEEEEECCCCchhh---------CCh
Confidence 011222211111235666665421 111 011256778889999999999976544431 222
Q ss_pred hhccCeEeecCHH
Q 008168 401 AWTLADVIEVTKQ 413 (575)
Q Consensus 401 ll~~aDIl~~N~~ 413 (575)
+-..+||+.-+..
T Consensus 195 l~~GADIvv~S~T 207 (432)
T PRK06702 195 FEHGANIIVHSTT 207 (432)
T ss_pred hhcCCCEEEEccc
Confidence 3345787765543
No 101
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=52.86 E-value=47 Score=31.91 Aligned_cols=64 Identities=19% Similarity=0.145 Sum_probs=47.9
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHH
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELE 416 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~ 416 (575)
+++++...|+.+ ..+.+..+-+.++.+|+.|+.||.++. +..+..+.+.++.+-..++...++.
T Consensus 22 d~~~I~T~Gs~i----~~~~i~~i~~~~~~rgVIIfTDpD~~G------ekIRk~i~~~vp~~khafi~~~~a~ 85 (174)
T TIGR00334 22 DVDVIETNGSAL----KDETINLIKKAQKKQGVIILTDPDFPG------EKIRKKIEQHLPGYENCFIPKHLAK 85 (174)
T ss_pred CceEEEECCCcc----CHHHHHHHHHHhhcCCEEEEeCCCCch------HHHHHHHHHHCCCCeEEeeeHHhcC
Confidence 589999988754 345555555666778999999987643 3456778888898999999988874
No 102
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=51.22 E-value=34 Score=30.25 Aligned_cols=96 Identities=11% Similarity=0.161 Sum_probs=50.3
Q ss_pred EEEeC-CChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecC--CccccCCccccchhhhccCcEE
Q 008168 271 MGKLG-DDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKP--CAEDALTKSEINIDVLKEAKMF 347 (575)
Q Consensus 271 ig~VG-~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~--ga~~~lt~~~i~~~~l~~ad~v 347 (575)
|+.+| ....|..+.+.|.+ .-+...+.+..... ..|.. +....+ .....+..++.+...+.++|++
T Consensus 2 V~IvGAtG~vG~~l~~lL~~-hp~~e~~~~~~~~~---------~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvv 70 (121)
T PF01118_consen 2 VAIVGATGYVGRELLRLLAE-HPDFELVALVSSSR---------SAGKP-LSEVFPHPKGFEDLSVEDADPEELSDVDVV 70 (121)
T ss_dssp EEEESTTSHHHHHHHHHHHH-TSTEEEEEEEESTT---------TTTSB-HHHTTGGGTTTEEEBEEETSGHHHTTESEE
T ss_pred EEEECCCCHHHHHHHHHHhc-CCCccEEEeeeecc---------ccCCe-eehhccccccccceeEeecchhHhhcCCEE
Confidence 45566 66789999999987 33333222211111 01221 111111 0011222233334567899999
Q ss_pred EEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCC
Q 008168 348 YFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPL 385 (575)
Q Consensus 348 ~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~ 385 (575)
+++. +.....++...+.+.|+ .++|.+...
T Consensus 71 f~a~-------~~~~~~~~~~~~~~~g~-~ViD~s~~~ 100 (121)
T PF01118_consen 71 FLAL-------PHGASKELAPKLLKAGI-KVIDLSGDF 100 (121)
T ss_dssp EE-S-------CHHHHHHHHHHHHHTTS-EEEESSSTT
T ss_pred EecC-------chhHHHHHHHHHhhCCc-EEEeCCHHH
Confidence 8873 34455667777777887 778987543
No 103
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=49.60 E-value=1.5e+02 Score=30.14 Aligned_cols=71 Identities=18% Similarity=0.141 Sum_probs=47.6
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEee-----cCHHHHHH
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIE-----VTKQELEF 417 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~-----~N~~Ea~~ 417 (575)
.++.|.++|--. -...+.+.++++.+++.|+.+.+|.|...+ ...+..+++.+|.+. ++.+-.+.
T Consensus 83 ~~~gvt~SGGEP--~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~--------~~~~~~l~~~~D~v~~DlK~~~~~~y~~ 152 (260)
T COG1180 83 SGGGVTFSGGEP--TLQAEFALDLLRAAKERGLHVALDTNGFLP--------PEALEELLPLLDAVLLDLKAFDDELYRK 152 (260)
T ss_pred CCCEEEEECCcc--hhhHHHHHHHHHHHHHCCCcEEEEcCCCCC--------HHHHHHHHhhcCeEEEeeccCChHHHHH
Confidence 578788886311 135788999999999999999999885443 233345555666554 33344777
Q ss_pred hhCCCC
Q 008168 418 LCGIKP 423 (575)
Q Consensus 418 L~g~~~ 423 (575)
++|...
T Consensus 153 ~tg~~~ 158 (260)
T COG1180 153 LTGADN 158 (260)
T ss_pred HhCCCc
Confidence 777553
No 104
>PRK15452 putative protease; Provisional
Probab=47.33 E-value=1.7e+02 Score=32.30 Aligned_cols=79 Identities=11% Similarity=0.041 Sum_probs=45.3
Q ss_pred hhhccCcEEEEecc--ccc---ccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhc-cCe-EeecC
Q 008168 339 DVLKEAKMFYFSTH--SML---ERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT-LAD-VIEVT 411 (575)
Q Consensus 339 ~~l~~ad~v~~sg~--~l~---~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~-~aD-Il~~N 411 (575)
..-..||.||+++- .+. .+...+.+.++++.|+++|++|++-.|....- .....+...+..+.. .+| ||.-|
T Consensus 19 Ai~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e-~el~~~~~~l~~l~~~gvDgvIV~d 97 (443)
T PRK15452 19 AFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHN-AKLKTFIRDLEPVIAMKPDALIMSD 97 (443)
T ss_pred HHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCH-HHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 34458999999762 111 12345678899999999999999987632210 011122333444333 366 45555
Q ss_pred HHHHHHh
Q 008168 412 KQELEFL 418 (575)
Q Consensus 412 ~~Ea~~L 418 (575)
...+..+
T Consensus 98 ~G~l~~~ 104 (443)
T PRK15452 98 PGLIMMV 104 (443)
T ss_pred HHHHHHH
Confidence 5555444
No 105
>PRK15447 putative protease; Provisional
Probab=46.37 E-value=2.4e+02 Score=29.30 Aligned_cols=73 Identities=11% Similarity=0.003 Sum_probs=45.1
Q ss_pred cCcEEEEecc--cccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhcc-Ce-EeecCHHHHHHh
Q 008168 343 EAKMFYFSTH--SMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTL-AD-VIEVTKQELEFL 418 (575)
Q Consensus 343 ~ad~v~~sg~--~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~-aD-Il~~N~~Ea~~L 418 (575)
.+|.||++.- .+..+...+.+.++++.++++|+.|++-.+. +.....+ ...+.+++.. .| |+.-|...+..+
T Consensus 28 gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~---i~~~~~e-~~~l~~~l~~~~~~v~v~d~g~l~~~ 103 (301)
T PRK15447 28 PVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLA---LVEAPSE-LKELRRLVENGEFLVEANDLGAVRLL 103 (301)
T ss_pred CCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecc---cccCHHH-HHHHHHHHhcCCCEEEEeCHHHHHHH
Confidence 6999999852 2223456788999999999999999986532 1110112 2233344433 34 555677777665
Q ss_pred h
Q 008168 419 C 419 (575)
Q Consensus 419 ~ 419 (575)
-
T Consensus 104 ~ 104 (301)
T PRK15447 104 A 104 (301)
T ss_pred H
Confidence 5
No 106
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=45.57 E-value=8 Score=44.33 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=15.4
Q ss_pred ccchhhhhhhhhhcccccccccC
Q 008168 133 TGMEEEKTEKKVRRRRKTTKKIG 155 (575)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~ 155 (575)
+.+.+..-.+|.|+++|.+++.|
T Consensus 185 ~~~~~~~~~~ke~k~~~~~~eqe 207 (822)
T KOG2141|consen 185 SDGSKLLLDFKERKKKKEKEEQE 207 (822)
T ss_pred hhHHHhhhhhhHHHHHHhhhhhh
Confidence 34555566677788888777665
No 107
>PF10278 Med19: Mediator of RNA pol II transcription subunit 19 ; InterPro: IPR019403 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=42.42 E-value=15 Score=35.27 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=10.3
Q ss_pred cccceeEeccccccc
Q 008168 23 SSVNLMHAQNFRLHS 37 (575)
Q Consensus 23 ~~~~~~~~~~~~~~~ 37 (575)
+.++-.||++|||+.
T Consensus 80 ~pL~~~~L~gFrL~p 94 (178)
T PF10278_consen 80 TPLSSSQLAGFRLHP 94 (178)
T ss_pred CcCCHHHHhhccCCC
Confidence 345556778899884
No 108
>PRK09028 cystathionine beta-lyase; Provisional
Probab=41.64 E-value=1.5e+02 Score=32.09 Aligned_cols=43 Identities=9% Similarity=0.220 Sum_probs=29.7
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCc
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLP 386 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~ 386 (575)
+.++|+++...... .....+.++++.|+++|+.+++|-.+..+
T Consensus 146 ~TklV~lespsNPt-g~v~dl~~I~~la~~~g~~lvvD~t~a~p 188 (394)
T PRK09028 146 NTKVLFLESPGSIT-MEVQDVPTLSRIAHEHDIVVMLDNTWASP 188 (394)
T ss_pred CceEEEEECCCCCC-CcHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence 46778887532111 12456788889999999999999766544
No 109
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=41.43 E-value=55 Score=34.96 Aligned_cols=50 Identities=20% Similarity=0.162 Sum_probs=34.3
Q ss_pred ccccccccccccccccCccccccceeEecccccc-------ccchhhHHhhhhhhhh
Q 008168 3 SLSFAHFLSLPRCHSNWQYCSSVNLMHAQNFRLH-------SAKWHLVATSRKKIVQ 52 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 52 (575)
.|||-.|-+.|--.-..--.+-..+|||+-||+. +-..+-.-.+|||-.+
T Consensus 141 GLSFVk~H~~~~~~~~~~~~~~~~V~q~G~FklrEE~~~s~t~~~~~~F~S~~~qT~ 197 (508)
T KOG3226|consen 141 GLSFVKVHVVAAAAPKVKSLVPQGVMQFGTFKLREESPDSETDNQVNRFHSWKKQTQ 197 (508)
T ss_pred ceeeEEEecccccccccccccccceeeeeeEeeeccCCcccccchHHhhhhhhhccC
Confidence 4788888887776666666788899999999984 2234444455655433
No 110
>PRK05967 cystathionine beta-lyase; Provisional
Probab=39.53 E-value=2.4e+02 Score=30.63 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=29.7
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCcc
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPL 387 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l 387 (575)
+.++|++...... -.....+.++.+.|+++|+.+++|-.+..++
T Consensus 149 ~TklV~lesPsNP-~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~ 192 (395)
T PRK05967 149 NTKVVHTEAPGSN-TFEMQDIPAIAEAAHRHGAIVMMDNTWATPL 192 (395)
T ss_pred CceEEEEECCCCC-CCcHHHHHHHHHHHHHhCCEEEEECCccCce
Confidence 4677887753210 1234457788899999999999997755443
No 111
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=34.50 E-value=2.1e+02 Score=29.22 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=44.5
Q ss_pred hhhhccCcEEEEecccccccc----hHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCH
Q 008168 338 IDVLKEAKMFYFSTHSMLERN----MKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTK 412 (575)
Q Consensus 338 ~~~l~~ad~v~~sg~~l~~~~----~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~ 412 (575)
...+..+|+++++|-.++.+. ..-.+..++..|+..|.++++=.....|+-. ...+..+..++.++|.+.+=+
T Consensus 59 ~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~giGP~~~--~~~r~~~~~~l~~~~~i~vRD 135 (298)
T TIGR03609 59 LRALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQGIGPLRR--RLSRWLVRRVLRGCRAISVRD 135 (298)
T ss_pred HHHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEecccCCcCC--HHHHHHHHHHHccCCEEEEeC
Confidence 356788999988875444321 1222344567777888876664443334321 123556777899999998733
No 112
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=32.99 E-value=14 Score=31.68 Aligned_cols=7 Identities=57% Similarity=0.643 Sum_probs=1.9
Q ss_pred EEEECcc
Q 008168 207 VCCFGSA 213 (575)
Q Consensus 207 VlviG~~ 213 (575)
|.-+|.+
T Consensus 43 ~p~fgea 49 (101)
T PF09026_consen 43 VPEFGEA 49 (101)
T ss_dssp ---HHHH
T ss_pred chhHHHH
Confidence 4445543
No 113
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=32.31 E-value=3.5e+02 Score=28.90 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=74.0
Q ss_pred ceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEec
Q 008168 245 KFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVK 324 (575)
Q Consensus 245 ~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~ 324 (575)
-...-.||+|.|+.-.+...|.+-.=+-.+..| .+.|+...++.. +++-.. .| . ...
T Consensus 14 I~VIGvGg~G~n~v~~m~~~~~~gve~ia~nTD------~q~L~~~~a~~k-i~iG~~-~t--------------~-GlG 70 (338)
T COG0206 14 IKVIGVGGAGGNAVNRMIEEGVEGVEFIAINTD------AQALKSSKADRK-ILIGES-IT--------------R-GLG 70 (338)
T ss_pred EEEEEeCCcchHHHHHHHHhhhCceEEEEeccC------HHHHhccccCeE-EEeccc-ee--------------e-ccC
Confidence 345678999999999999999884444456677 345655554432 222110 00 0 011
Q ss_pred CCccccCC----ccccc--hhhhccCcEEEEe-cccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCcccc--CchhHH
Q 008168 325 PCAEDALT----KSEIN--IDVLKEAKMFYFS-THSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQ--SGEETK 395 (575)
Q Consensus 325 ~ga~~~lt----~~~i~--~~~l~~ad~v~~s-g~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~--~~~~~~ 395 (575)
.++++.+- .+++. ...++.++++++. |+..- .-.....-+.+.+++.|.+++-=..+|..+-. ....+.
T Consensus 71 aGa~P~vG~~aAee~~~~I~~~l~g~dmvfitaG~GGG--TGtGaaPVvakiake~g~ltvavvt~Pf~~EG~~r~~~A~ 148 (338)
T COG0206 71 AGANPEVGRAAAEESIEEIEEALKGADMVFVTAGMGGG--TGTGAAPVVAEIAKELGALTVAVVTLPFSFEGSPRMENAE 148 (338)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCeEEEEeeecCC--ccccccHHHHHHHHhcCCcEEEEEEecchhcCchHHHHHH
Confidence 12222221 11111 4678899966555 33211 11112233456677788764433332322210 112234
Q ss_pred HHHHHhhccCe--EeecCHHHHHH
Q 008168 396 MFIQQAWTLAD--VIEVTKQELEF 417 (575)
Q Consensus 396 ~~l~~ll~~aD--Il~~N~~Ea~~ 417 (575)
.-+..|-.++| |+++|..-+..
T Consensus 149 ~gi~~L~~~~DtlIvi~Ndkll~~ 172 (338)
T COG0206 149 EGIEELREVVDTLIVIPNDKLLKG 172 (338)
T ss_pred HHHHHHHHhCCcEEEEecHHHHhc
Confidence 45666777666 66677765443
No 114
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=32.17 E-value=3e+02 Score=28.17 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=39.6
Q ss_pred cEEEEec-ccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEee-----cCHHHHHHh
Q 008168 345 KMFYFST-HSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIE-----VTKQELEFL 418 (575)
Q Consensus 345 d~v~~sg-~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~-----~N~~Ea~~L 418 (575)
..|.++| -+++ ..+.+.++++.+++.|..+.++.|.... .+.+..+++..|++. .+.+....+
T Consensus 127 ~~V~~sGGEPll---~~~~l~~l~~~~k~~g~~~~i~TnG~~~--------~~~~~~ll~~~d~~~isl~~~~~~~~~~~ 195 (295)
T TIGR02494 127 GGVTLSGGEPLL---QPEFALALLQACHERGIHTAVETSGFTP--------WETIEKVLPYVDLFLFDIKHLDDERHKEV 195 (295)
T ss_pred CcEEeeCcchhc---hHHHHHHHHHHHHHcCCcEeeeCCCCCC--------HHHHHHHHhhCCEEEEeeccCChHHHHHH
Confidence 3456665 2332 2445678999999999989998775321 233555566667654 344445555
Q ss_pred hCC
Q 008168 419 CGI 421 (575)
Q Consensus 419 ~g~ 421 (575)
.|.
T Consensus 196 ~g~ 198 (295)
T TIGR02494 196 TGV 198 (295)
T ss_pred hCC
Confidence 553
No 115
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=31.98 E-value=1.7e+02 Score=27.22 Aligned_cols=58 Identities=16% Similarity=0.010 Sum_probs=42.5
Q ss_pred cEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHH
Q 008168 345 KMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQEL 415 (575)
Q Consensus 345 d~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea 415 (575)
..|.++|-- ...+.+.++++.+++.|..+.++.++.. .+...++++++|+++......
T Consensus 63 ~gVt~SGGE----l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~---------~~~~~~il~~iD~l~~g~y~~ 120 (147)
T TIGR02826 63 SCVLFLGGE----WNREALLSLLKIFKEKGLKTCLYTGLEP---------KDIPLELVQHLDYLKTGRWIH 120 (147)
T ss_pred CEEEEechh----cCHHHHHHHHHHHHHCCCCEEEECCCCC---------HHHHHHHHHhCCEEEEChHHH
Confidence 467777632 4567888999999999999999976432 234567788999999887543
No 116
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=31.38 E-value=2.5e+02 Score=30.27 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=16.5
Q ss_pred HHHHHHHHhhcCCEEEEcCCC
Q 008168 363 TLQAIKISKQFGGIIFYDVNL 383 (575)
Q Consensus 363 ~~~~l~~ak~~G~~Vv~D~~~ 383 (575)
+.++++.|+++|+.|++|-.+
T Consensus 165 l~~I~~la~~~gi~livD~t~ 185 (390)
T PRK08133 165 IAALAEIAHAAGALLVVDNCF 185 (390)
T ss_pred HHHHHHHHHHcCCEEEEECCC
Confidence 466777888889999999754
No 117
>PF05077 DUF678: Protein of unknown function (DUF678); InterPro: IPR007769 This family contains poxvirus proteins belonging to the A19 family. The proteins are of unknown function.
Probab=29.35 E-value=24 Score=28.75 Aligned_cols=12 Identities=42% Similarity=0.695 Sum_probs=7.8
Q ss_pred hhhccccccccc
Q 008168 143 KVRRRRKTTKKI 154 (575)
Q Consensus 143 ~~~~~~~~~~~~ 154 (575)
++|||||++...
T Consensus 7 ~Krrkrk~~t~v 18 (74)
T PF05077_consen 7 KKRRKRKPKTTV 18 (74)
T ss_pred chhcccCCCcee
Confidence 455777777665
No 118
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=29.09 E-value=7.6e+02 Score=26.66 Aligned_cols=94 Identities=13% Similarity=0.023 Sum_probs=51.2
Q ss_pred CeEEEEEeCCChHHHHHHHHHH-hCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccch-hhhccC
Q 008168 267 KVAFMGKLGDDEYGQAMLYYMN-VNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI-DVLKEA 344 (575)
Q Consensus 267 ~v~lig~VG~D~~G~~l~~~L~-~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~-~~l~~a 344 (575)
++.++|.-| ..|+.+++.|. +.......+......+. .|. ...+. +. .+...++.. ..+.+.
T Consensus 2 ~VavvGATG--~VG~~ll~~L~~e~~fp~~~~~~~ss~~s---------~g~-~~~f~--~~--~~~v~~~~~~~~~~~v 65 (366)
T TIGR01745 2 NVGLVGWRG--MVGSVLMQRMQEERDFDAIRPVFFSTSQL---------GQA-APSFG--GT--TGTLQDAFDIDALKAL 65 (366)
T ss_pred eEEEEcCcC--HHHHHHHHHHHhCCCCccccEEEEEchhh---------CCC-cCCCC--CC--cceEEcCcccccccCC
Confidence 456666666 48999999888 55665333222211111 111 11111 11 112222222 246788
Q ss_pred cEEEEecccccccchHHHHHHHHHHHhhcCC-EEEEcCCC
Q 008168 345 KMFYFSTHSMLERNMKSTTLQAIKISKQFGG-IIFYDVNL 383 (575)
Q Consensus 345 d~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~-~Vv~D~~~ 383 (575)
|+++++. ..+...++...+.+.|. .+++|.+.
T Consensus 66 Divffa~-------g~~~s~~~~p~~~~aG~~~~VIDnSS 98 (366)
T TIGR01745 66 DIIITCQ-------GGDYTNEIYPKLRESGWQGYWIDAAS 98 (366)
T ss_pred CEEEEcC-------CHHHHHHHHHHHHhCCCCeEEEECCh
Confidence 9998873 23466777788888997 47889653
No 119
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=28.55 E-value=88 Score=32.48 Aligned_cols=80 Identities=9% Similarity=0.059 Sum_probs=50.7
Q ss_pred ccCCccccchhh------hccCcEEEEecccc---cccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHH
Q 008168 329 DALTKSEINIDV------LKEAKMFYFSTHSM---LERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQ 399 (575)
Q Consensus 329 ~~lt~~~i~~~~------l~~ad~v~~sg~~l---~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~ 399 (575)
..+++++|.... .....+|+++-..- -...+.+.+.++.+.|+++|+++.+| ...+|.........+.
T Consensus 104 G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmD---GARl~~a~~~~~~~~~ 180 (290)
T PF01212_consen 104 GKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMD---GARLANAAAALGVSLA 180 (290)
T ss_dssp TBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEE---ETTHHHHHCHHHHHHH
T ss_pred CCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEe---hhhHHHhhhcccccHH
Confidence 356777764211 12356888875321 22345778899999999999999999 4567764444455677
Q ss_pred HhhccCeEeecC
Q 008168 400 QAWTLADVIEVT 411 (575)
Q Consensus 400 ~ll~~aDIl~~N 411 (575)
++..++|++.++
T Consensus 181 e~~~~~D~v~~~ 192 (290)
T PF01212_consen 181 EIAAGADSVSFG 192 (290)
T ss_dssp HHHTTSSEEEEE
T ss_pred HHhhhCCEEEEE
Confidence 788889988653
No 120
>PRK08114 cystathionine beta-lyase; Provisional
Probab=28.48 E-value=3.1e+02 Score=29.84 Aligned_cols=109 Identities=11% Similarity=0.095 Sum_probs=55.6
Q ss_pred CceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHH---HHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEE
Q 008168 244 EKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYG---QAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRM 320 (575)
Q Consensus 244 ~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G---~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~ 320 (575)
......+.|.++..+..++-|...-.++.. ++.+| .++.+.|++.||.+.++. .. +
T Consensus 78 ~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~--~~~Yg~t~~l~~~~l~~~Gi~v~~vd--~~----------d------- 136 (395)
T PRK08114 78 AGCALYPCGAAAVANAILAFVEQGDHVLMT--GTAYEPTQDFCSKILSKLGVTTTWFD--PL----------I------- 136 (395)
T ss_pred CeEEEEhHHHHHHHHHHHHHcCCCCEEEEe--CCCcHHHHHHHHHHHHhcCcEEEEEC--CC----------C-------
Confidence 345566778888777666666432223322 33343 334456778888765432 10 0
Q ss_pred EEecCCccccCCccccchhhh-ccCcEEEEecccccccchHHHHHHHHHHHhhc--CCEEEEcCCCCCcc
Q 008168 321 TCVKPCAEDALTKSEINIDVL-KEAKMFYFSTHSMLERNMKSTTLQAIKISKQF--GGIIFYDVNLPLPL 387 (575)
Q Consensus 321 ~~~~~ga~~~lt~~~i~~~~l-~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~--G~~Vv~D~~~~~~l 387 (575)
.+.+ ...+ .+.++|++....... ....-+.++.+.|+++ |+.+++|-....++
T Consensus 137 ------------~~~l-~~~l~~~TrlV~~EtpsNp~-~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~ 192 (395)
T PRK08114 137 ------------GADI-AKLIQPNTKVVFLESPGSIT-MEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGV 192 (395)
T ss_pred ------------HHHH-HHhcCCCceEEEEECCCCCC-CEeecHHHHHHHHHHhCCCCEEEEECCCcccc
Confidence 0011 0111 134667776532110 0112345667777776 48999997665544
No 121
>PRK05968 hypothetical protein; Provisional
Probab=28.24 E-value=6.1e+02 Score=27.20 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=27.7
Q ss_pred ccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCC
Q 008168 342 KEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLP 384 (575)
Q Consensus 342 ~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~ 384 (575)
.+.++|++...... -.....+.++.+.|+++|+++++|-.+.
T Consensus 146 ~~tklV~ie~pt~~-~~~~~dl~~i~~la~~~gi~vivD~a~a 187 (389)
T PRK05968 146 PGAKLLYLESPTSW-VFELQDVAALAALAKRHGVVTMIDNSWA 187 (389)
T ss_pred ccCCEEEEECCCCC-CCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 45677777643211 1234566778888999999999997543
No 122
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=28.09 E-value=4e+02 Score=30.28 Aligned_cols=36 Identities=22% Similarity=0.160 Sum_probs=24.8
Q ss_pred HHHHHHHcCCCeEEEEEeCCC-hHHHHHHHHHHhCCCcc
Q 008168 257 AAIALARLGGKVAFMGKLGDD-EYGQAMLYYMNVNNVQT 294 (575)
Q Consensus 257 vA~aLarLG~~v~lig~VG~D-~~G~~l~~~L~~~GIdt 294 (575)
+|+.+|..|.+|...|.-+-. ..|- .+.|...||++
T Consensus 293 aa~v~A~~Gv~V~kHG~r~~ss~~Gs--advlealGi~~ 329 (531)
T PRK09522 293 SAFVAAACGLKVAKHGNRSVSSKSGS--SDLLAAFGINL 329 (531)
T ss_pred HHHHHHhCCCcEEEeCCCCCCCCccH--HHHHHHcCCCC
Confidence 567888999999999865532 1332 56667778765
No 123
>PRK07050 cystathionine beta-lyase; Provisional
Probab=27.98 E-value=4.7e+02 Score=28.22 Aligned_cols=43 Identities=5% Similarity=0.062 Sum_probs=27.5
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCc
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLP 386 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~ 386 (575)
+.++|+++...... .....+.++.+.|+++|+.+++|-.+..+
T Consensus 150 ~tklV~le~p~Np~-~~~~di~~I~~ia~~~gi~livD~a~a~~ 192 (394)
T PRK07050 150 NTRLIWLEAPGSVT-MEVPDVPAITAAARARGVVTAIDNTYSAG 192 (394)
T ss_pred CCeEEEEECCCCCC-ccHhhHHHHHHHHHHcCCEEEEECCcccc
Confidence 35667766421110 13445677888899999999999765443
No 124
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=27.73 E-value=3.2e+02 Score=29.39 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=24.5
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCC
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLP 384 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~ 384 (575)
+.++|++.......- ....+.++.+.++++|+.+++|-.+.
T Consensus 144 ~tklV~le~p~Np~G-~v~dl~~I~~la~~~gi~livD~a~a 184 (391)
T TIGR01328 144 NTKIVYFETPANPTM-KLIDMERVCRDAHSQGVKVIVDNTFA 184 (391)
T ss_pred CCeEEEEECCCCCCC-cccCHHHHHHHHHHcCCEEEEECCCc
Confidence 456777664311100 01124567778888999999997654
No 125
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=27.18 E-value=4.9e+02 Score=27.92 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=28.6
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCc
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLP 386 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~ 386 (575)
+.++|++....... .....+.++.+.|+++|+.+++|-.+..+
T Consensus 135 ~tklV~lesp~Np~-g~~~dl~~I~~la~~~g~~livD~t~a~g 177 (377)
T TIGR01324 135 NTKVLFLEAPSSIT-FEIQDIPAIAKAARNPGIVIMIDNTWAAG 177 (377)
T ss_pred CceEEEEECCCCCC-CcHHHHHHHHHHHHHcCCEEEEECCCccc
Confidence 46677776532211 23445677888899999999999765443
No 126
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=26.64 E-value=2.8e+02 Score=30.47 Aligned_cols=59 Identities=12% Similarity=0.109 Sum_probs=34.6
Q ss_pred cCcEEEEecccccccc-hHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCH
Q 008168 343 EAKMFYFSTHSMLERN-MKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTK 412 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~-~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~ 412 (575)
+.++|++.... ++. ..-.+.++.+.|+++|+++++|.....+... ..+--.+|++..+.
T Consensus 149 ~TklV~~e~~~--np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~---------~pl~~GaD~vv~S~ 208 (433)
T PRK08134 149 NTRLLFGETLG--NPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLL---------RPFEHGADLVYHSA 208 (433)
T ss_pred CCeEEEEECCC--cccCcccCHHHHHHHHHHcCCEEEEECCCcccccC---------CchhcCCCEEEecc
Confidence 45666666431 110 1122567788889999999999765444321 12223688887773
No 127
>PRK05973 replicative DNA helicase; Provisional
Probab=25.49 E-value=5.3e+02 Score=25.99 Aligned_cols=104 Identities=10% Similarity=0.064 Sum_probs=57.7
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCc
Q 008168 254 TGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTK 333 (575)
Q Consensus 254 a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~ 333 (575)
+.+.+...++-|.+|.|++.=- ..+.+.+.+...|++..... . . ..++. . . .+..
T Consensus 81 alqfa~~~a~~Ge~vlyfSlEe---s~~~i~~R~~s~g~d~~~~~-----~--~--~~~d~--------~--d---~~~~ 135 (237)
T PRK05973 81 GLELAVEAMKSGRTGVFFTLEY---TEQDVRDRLRALGADRAQFA-----D--L--FEFDT--------S--D---AICA 135 (237)
T ss_pred HHHHHHHHHhcCCeEEEEEEeC---CHHHHHHHHHHcCCChHHhc-----c--c--eEeec--------C--C---CCCH
Confidence 4456666667788899987643 34678888888888754321 0 0 01110 0 0 0111
Q ss_pred cccchhhh--ccCcEEEEecccccc-----cchHHHHHHHHHHHhhcCCEEEEcCC
Q 008168 334 SEINIDVL--KEAKMFYFSTHSMLE-----RNMKSTTLQAIKISKQFGGIIFYDVN 382 (575)
Q Consensus 334 ~~i~~~~l--~~ad~v~~sg~~l~~-----~~~~e~~~~~l~~ak~~G~~Vv~D~~ 382 (575)
+.+-.... ...++|+++++..+. +.....+..+...+++.|++|++=..
T Consensus 136 ~~ii~~l~~~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQ 191 (237)
T PRK05973 136 DYIIARLASAPRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQ 191 (237)
T ss_pred HHHHHHHHHhhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEec
Confidence 11111111 256899999865442 11223445566788999999887543
No 128
>PRK06444 prephenate dehydrogenase; Provisional
Probab=25.49 E-value=2.2e+02 Score=27.88 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=18.4
Q ss_pred eEEEEEeCCChHHHHHHHHHHhCCCcc
Q 008168 268 VAFMGKLGDDEYGQAMLYYMNVNNVQT 294 (575)
Q Consensus 268 v~lig~VG~D~~G~~l~~~L~~~GIdt 294 (575)
+.+||.- ...|+++...|++.|..+
T Consensus 3 ~~iiG~~--G~mG~~~~~~~~~~g~~v 27 (197)
T PRK06444 3 EIIIGKN--GRLGRVLCSILDDNGLGV 27 (197)
T ss_pred EEEEecC--CcHHHHHHHHHHhCCCEE
Confidence 4455533 569999999999998653
No 129
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=25.37 E-value=46 Score=39.91 Aligned_cols=16 Identities=13% Similarity=0.000 Sum_probs=11.2
Q ss_pred CCCCHHHHHHhhCCCC
Q 008168 542 GYPPKEGMEEEVEPDP 557 (575)
Q Consensus 542 g~pt~eeve~~l~~~~ 557 (575)
++++++-|+.||+-.+
T Consensus 1151 SL~SLdLIe~fLe~v~ 1166 (1567)
T KOG1015|consen 1151 SLISLDLIEDFLELVS 1166 (1567)
T ss_pred ccchhHHHHHHHHhhc
Confidence 6777777777776543
No 130
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=25.12 E-value=5.5e+02 Score=27.77 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=25.6
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCc
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLP 386 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~ 386 (575)
+.++|++......... .-.+.++.+.|+++|+.+++|-.+..+
T Consensus 155 ~tklV~~esp~Nptg~-v~dl~~I~~la~~~g~~vivD~a~a~~ 197 (403)
T PRK07810 155 PTQAVFFETPSNPMQS-LVDIAAVSELAHAAGAKVVLDNVFATP 197 (403)
T ss_pred CceEEEEECCCCCCCe-ecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 4567776542211101 112566777788899999999765544
No 131
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=24.81 E-value=4e+02 Score=28.24 Aligned_cols=43 Identities=14% Similarity=0.288 Sum_probs=25.8
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCc
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLP 386 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~ 386 (575)
+.++|++.+.....-. ...+.++.+.|+++|+.+++|-.+..+
T Consensus 125 ~~~~v~~e~~~np~g~-~~dl~~i~~la~~~g~~livD~t~~~~ 167 (369)
T cd00614 125 ETKLVYVESPTNPTLK-VVDIEAIAELAHEHGALLVVDNTFATP 167 (369)
T ss_pred CCeEEEEECCCCCCCe-ecCHHHHHHHHHHcCCEEEEECCCcch
Confidence 4567776643211101 112457778889999999999765433
No 132
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=24.78 E-value=4.1e+02 Score=29.16 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=24.7
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCC
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLP 384 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~ 384 (575)
+.++|++....... ...-.+.++.+.|+++|+.|++|-.+.
T Consensus 149 ~tklV~l~sp~NPt-G~v~di~~I~~la~~~gi~vIvD~t~a 189 (431)
T PRK08248 149 KTKALFAETIGNPK-GDVLDIEAVAAIAHEHGIPLIVDNTFA 189 (431)
T ss_pred CCeEEEEECCCCCC-CcccCHHHHHHHHHHcCCEEEEeCCCC
Confidence 45677776321100 011124577788899999999997543
No 133
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=24.48 E-value=76 Score=38.22 Aligned_cols=29 Identities=34% Similarity=0.413 Sum_probs=14.1
Q ss_pred ccccCC-ccchhhhhhh--hhhcccccccccC
Q 008168 127 KAASAS-TGMEEEKTEK--KVRRRRKTTKKIG 155 (575)
Q Consensus 127 ~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~ 155 (575)
|-+.|+ +..+++++++ |+|.||++..+.|
T Consensus 457 K~~vsd~e~peekkt~~k~ksR~~~~~sSese 488 (1567)
T KOG1015|consen 457 KLTVSDGESPEEKKTKPKEKSRNRRKVSSESE 488 (1567)
T ss_pred chhhcccccchhhhcchhhhccchhhhccccc
Confidence 444433 2234444444 4566666655553
No 134
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=23.77 E-value=1.3e+02 Score=25.21 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=32.6
Q ss_pred CChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHHHHhCCCcc
Q 008168 251 GGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQT 294 (575)
Q Consensus 251 GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~~L~~~GIdt 294 (575)
+|.+...+..+...|.++.+++.+|.. .+..|+..||..
T Consensus 47 ~~~~~~~~~~l~~~~v~~vi~~~iG~~-----a~~~l~~~gI~v 85 (102)
T cd00562 47 GGEGKLAARLLALEGCDAVLVGGIGGP-----AAAKLEAAGIKP 85 (102)
T ss_pred CccchHHHHHHHHCCCcEEEEcccCcc-----HHHHHHHcCCEE
Confidence 467788999999999999999999976 356778889875
No 135
>PHA00438 hypothetical protein
Probab=23.39 E-value=58 Score=26.91 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=14.9
Q ss_pred cChhHHHHHHHHHHHHc
Q 008168 492 SASGDGIVAGIMRMLTV 508 (575)
Q Consensus 492 tGAGDaF~AGfl~~L~~ 508 (575)
.|..++|+|||++|+.-
T Consensus 47 ~G~SE~~IaGfl~Gl~y 63 (81)
T PHA00438 47 AGYSEAFIAGFLAGLQY 63 (81)
T ss_pred cCCcHHHHHHHHHHHHH
Confidence 58999999999999853
No 136
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.32 E-value=1.6e+02 Score=25.00 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=29.9
Q ss_pred hhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcC
Q 008168 339 DVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDV 381 (575)
Q Consensus 339 ~~l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~ 381 (575)
..+..+|+|++-. +-........+-+.|++.++++++--
T Consensus 44 ~~i~~aD~VIv~t----~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 44 SKIKKADLVIVFT----DYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HhcCCCCEEEEEe----CCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 4577888887753 33467778888899999999998874
No 137
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=23.14 E-value=5.5e+02 Score=27.45 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=49.8
Q ss_pred ccCcEEEEecc--ccc---ccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhc-cCeEeecCHHHH
Q 008168 342 KEAKMFYFSTH--SML---ERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT-LADVIEVTKQEL 415 (575)
Q Consensus 342 ~~ad~v~~sg~--~l~---~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~-~aDIl~~N~~Ea 415 (575)
..+|.||++.. .+. .....+.+.++++.|+++|+++++-.|..... ...+.+...+..+.. .+|-|+++.--+
T Consensus 25 ~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~-~~~~~~~~~l~~l~e~GvDaviv~Dpg~ 103 (347)
T COG0826 25 AGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHN-DELETLERYLDRLVELGVDAVIVADPGL 103 (347)
T ss_pred cCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEecccccc-chhhHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 45899999853 111 12456678999999999999888877643211 111222344544443 688888888777
Q ss_pred HHhhC
Q 008168 416 EFLCG 420 (575)
Q Consensus 416 ~~L~g 420 (575)
-.++.
T Consensus 104 i~l~~ 108 (347)
T COG0826 104 IMLAR 108 (347)
T ss_pred HHHHH
Confidence 66664
No 138
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=23.12 E-value=7.1e+02 Score=24.85 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=31.1
Q ss_pred hccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCC
Q 008168 341 LKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVN 382 (575)
Q Consensus 341 l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~ 382 (575)
-..+||+.+.|.+ +.+++..+++.|++.|+.+.+|+-
T Consensus 78 ~aGAd~~tV~g~A-----~~~TI~~~i~~A~~~~~~v~iDl~ 114 (217)
T COG0269 78 EAGADWVTVLGAA-----DDATIKKAIKVAKEYGKEVQIDLI 114 (217)
T ss_pred HcCCCEEEEEecC-----CHHHHHHHHHHHHHcCCeEEEEee
Confidence 3578999998753 467889999999999999999974
No 139
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=23.00 E-value=2.2e+02 Score=31.21 Aligned_cols=130 Identities=22% Similarity=0.253 Sum_probs=68.2
Q ss_pred HcC-CCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhh
Q 008168 263 RLG-GKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVL 341 (575)
Q Consensus 263 rLG-~~v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l 341 (575)
.+| ..-.=+-.||....|+.+...|...|+.- |.+. + +|- ..... +. ...+ ...+..+++ ...+
T Consensus 172 ~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~--i~Ia-N-RT~-------erA~~-La-~~~~-~~~~~l~el-~~~l 236 (414)
T COG0373 172 IFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKK--ITIA-N-RTL-------ERAEE-LA-KKLG-AEAVALEEL-LEAL 236 (414)
T ss_pred HhcccccCeEEEEcccHHHHHHHHHHHhCCCCE--EEEE-c-CCH-------HHHHH-HH-HHhC-CeeecHHHH-HHhh
Confidence 355 35444556777789999999999999853 3221 1 110 00000 00 0011 111223333 4678
Q ss_pred ccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhC
Q 008168 342 KEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCG 420 (575)
Q Consensus 342 ~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g 420 (575)
.++|+|+.+..+...-...+.+..+++.-+ . .++||+..|..+ -..+-...++...+.+++..+..
T Consensus 237 ~~~DvVissTsa~~~ii~~~~ve~a~~~r~--~-~livDiavPRdi----------e~~v~~l~~v~l~~iDDL~~iv~ 302 (414)
T COG0373 237 AEADVVISSTSAPHPIITREMVERALKIRK--R-LLIVDIAVPRDV----------EPEVGELPNVFLYTIDDLEEIVE 302 (414)
T ss_pred hhCCEEEEecCCCccccCHHHHHHHHhccc--C-eEEEEecCCCCC----------CccccCcCCeEEEehhhHHHHHH
Confidence 899999887543211123344444443322 2 799999865443 12233345677777787777643
No 140
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=22.58 E-value=4.3e+02 Score=28.53 Aligned_cols=43 Identities=14% Similarity=0.289 Sum_probs=25.3
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCc
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLP 386 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~ 386 (575)
+.++|++.......-... .+.++.+.|+++|+.+++|-.+..+
T Consensus 149 ~tklV~ie~p~NPtg~v~-dl~~I~~la~~~gi~livD~t~a~~ 191 (398)
T PRK08249 149 GCDLLYLETPTNPTLKIV-DIERLAAAAKKVGALVVVDNTFATP 191 (398)
T ss_pred CCeEEEEECCCCCCCccC-CHHHHHHHHHHcCCEEEEECCcCcc
Confidence 456777754211000011 2456777888999999999765443
No 141
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=22.41 E-value=1.4e+02 Score=24.03 Aligned_cols=42 Identities=24% Similarity=0.319 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCCeEEEEEeC------CChHHHHHHHHHHhCCCccc
Q 008168 254 TGSAAIALARLGGKVAFMGKLG------DDEYGQAMLYYMNVNNVQTR 295 (575)
Q Consensus 254 a~NvA~aLarLG~~v~lig~VG------~D~~G~~l~~~L~~~GIdt~ 295 (575)
|.=+|..|+++|.+|.++..-. +......+.+.|++.||++.
T Consensus 11 g~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 11 GIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp HHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 5567888999999999988543 22357788999999998754
No 142
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=22.34 E-value=2.9e+02 Score=29.43 Aligned_cols=97 Identities=22% Similarity=0.237 Sum_probs=51.9
Q ss_pred HcCCCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhc
Q 008168 263 RLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLK 342 (575)
Q Consensus 263 rLG~~v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~ 342 (575)
+-..++.++|.-|- .|..+++.|...+.....+......+ ..|+. +.+ .+ ..+..+++....+.
T Consensus 5 ~~~~kVaVvGAtG~--vG~eLlrlL~~~~hP~~~l~~las~r---------saGk~-~~~--~~--~~~~v~~~~~~~~~ 68 (344)
T PLN02383 5 ENGPSVAIVGVTGA--VGQEFLSVLTDRDFPYSSLKMLASAR---------SAGKK-VTF--EG--RDYTVEELTEDSFD 68 (344)
T ss_pred CCCCeEEEEcCCCh--HHHHHHHHHHhCCCCcceEEEEEccC---------CCCCe-eee--cC--ceeEEEeCCHHHHc
Confidence 34567778887774 79999999987554322222111111 11221 111 11 11223333334567
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCC
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNL 383 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~ 383 (575)
++|+++++. +.+...++...+.+.|+ +++|.+.
T Consensus 69 ~~D~vf~a~-------p~~~s~~~~~~~~~~g~-~VIDlS~ 101 (344)
T PLN02383 69 GVDIALFSA-------GGSISKKFGPIAVDKGA-VVVDNSS 101 (344)
T ss_pred CCCEEEECC-------CcHHHHHHHHHHHhCCC-EEEECCc
Confidence 899998862 23345566666666665 5789764
No 143
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=22.29 E-value=4.7e+02 Score=27.93 Aligned_cols=41 Identities=5% Similarity=0.098 Sum_probs=25.6
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCC
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLP 384 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~ 384 (575)
+.++|+++......-. ...+.++.+.|+++|+.+++|-.+.
T Consensus 131 ~tklv~le~psnptg~-v~dl~~I~~la~~~g~~vivD~a~~ 171 (378)
T TIGR01329 131 KTKLVLLESPTNPLQK-IVDIRKISEMAHAQNALVVVDNTMM 171 (378)
T ss_pred CceEEEEECCCCCCCe-eecHHHHHHHHHHcCCEEEEECCCc
Confidence 4567777753211101 1125677888899999999997643
No 144
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=22.17 E-value=4.5e+02 Score=27.66 Aligned_cols=92 Identities=17% Similarity=0.243 Sum_probs=48.2
Q ss_pred CCeEEEEEeCCChHHHHHHHHHHhCCCcc---ceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhc
Q 008168 266 GKVAFMGKLGDDEYGQAMLYYMNVNNVQT---RSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLK 342 (575)
Q Consensus 266 ~~v~lig~VG~D~~G~~l~~~L~~~GIdt---~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~ 342 (575)
.++.++|.-|. .|+.+.+.|.+.+... ..+... ...+..+. . .|. .+.+ .++....+.
T Consensus 2 ~~V~IvGAtG~--vG~~l~~lL~~~~hp~~~l~~l~s~--~~~g~~l~-~--~g~-~i~v-----------~d~~~~~~~ 62 (334)
T PRK14874 2 YNVAVVGATGA--VGREMLNILEERNFPVDKLRLLASA--RSAGKELS-F--KGK-ELKV-----------EDLTTFDFS 62 (334)
T ss_pred CEEEEECCCCH--HHHHHHHHHHhCCCCcceEEEEEcc--ccCCCeee-e--CCc-eeEE-----------eeCCHHHHc
Confidence 45667777664 7999999998865443 332211 11121111 1 111 1111 122222346
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCC
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLP 384 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~ 384 (575)
++|+|+++. +.....++...+.+.|+ +++|.+..
T Consensus 63 ~vDvVf~A~-------g~g~s~~~~~~~~~~G~-~VIDlS~~ 96 (334)
T PRK14874 63 GVDIALFSA-------GGSVSKKYAPKAAAAGA-VVIDNSSA 96 (334)
T ss_pred CCCEEEECC-------ChHHHHHHHHHHHhCCC-EEEECCch
Confidence 789988862 23344555565556776 78897643
No 145
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=22.10 E-value=3.8e+02 Score=29.36 Aligned_cols=41 Identities=12% Similarity=0.352 Sum_probs=26.8
Q ss_pred CcEEEEecc--cccccchHHHHHHHHHHHhhcCCEEEEcCCCCCcc
Q 008168 344 AKMFYFSTH--SMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPL 387 (575)
Q Consensus 344 ad~v~~sg~--~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l 387 (575)
.++|++.+. +++. ...+.++.+.|+++|+.|++|-....++
T Consensus 163 t~~V~~ESPsNPll~---v~DI~~l~~la~~~g~~vvVDnTf~~p~ 205 (409)
T KOG0053|consen 163 TKAVFLESPSNPLLK---VPDIEKLARLAHKYGFLVVVDNTFGSPY 205 (409)
T ss_pred ceEEEEECCCCCccc---cccHHHHHHHHhhCCCEEEEeCCcCccc
Confidence 566666653 2211 2235677888899999999997765553
No 146
>PRK09330 cell division protein FtsZ; Validated
Probab=21.90 E-value=7.1e+02 Score=27.05 Aligned_cols=144 Identities=15% Similarity=0.153 Sum_probs=67.9
Q ss_pred eEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecC
Q 008168 246 FIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKP 325 (575)
Q Consensus 246 ~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ 325 (575)
...-.||+|.|+.-.+.+.|..-.=+-.+-.| .+.|.....+.. +++-.. .| . -....+... .
T Consensus 17 kViGvGG~G~Nav~~m~~~~~~~v~fia~NTD------~q~L~~~~a~~k-i~lG~~-~t-~---GlGaG~~pe-----~ 79 (384)
T PRK09330 17 KVIGVGGGGGNAVNRMIEEGIQGVEFIAANTD------AQALLKSKAPVK-IQLGEK-LT-R---GLGAGANPE-----V 79 (384)
T ss_pred EEEEECCcHHHHHHHHHHcCCCCceEEEEeCc------HHHHhcCCCCeE-EEcCCc-cc-c---cCCCCCCHH-----H
Confidence 34567999999999999988543333445566 245555444432 222111 11 0 000111110 0
Q ss_pred Cccc-cCCccccchhhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccC---chhHHHHHHHh
Q 008168 326 CAED-ALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQS---GEETKMFIQQA 401 (575)
Q Consensus 326 ga~~-~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~---~~~~~~~l~~l 401 (575)
+... .-..+.| ...+.++|+|++..-.. ....-....-+.+.+++.|++++-=...+.. +.. ...+...+..+
T Consensus 80 G~~aaee~~e~I-~~~l~~~D~vfI~AGmG-GGTGTGaapvIA~iake~g~ltvaVvt~PF~-fEG~~r~~nA~~gL~~L 156 (384)
T PRK09330 80 GRKAAEESREEI-REALEGADMVFITAGMG-GGTGTGAAPVVAEIAKELGILTVAVVTKPFS-FEGKKRMKQAEEGIEEL 156 (384)
T ss_pred HHHHHHHHHHHH-HHHHcCCCEEEEEecCC-CcccHHHHHHHHHHHHHcCCcEEEEEecCcc-ccchhHHHHHHHHHHHH
Confidence 0000 0011122 45678999998874211 1111122233557778888653332222211 111 11234567778
Q ss_pred hccCeEee
Q 008168 402 WTLADVIE 409 (575)
Q Consensus 402 l~~aDIl~ 409 (575)
..++|.++
T Consensus 157 ~~~~D~vI 164 (384)
T PRK09330 157 RKHVDTLI 164 (384)
T ss_pred HHHCCEEE
Confidence 88888655
No 147
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=21.80 E-value=4.4e+02 Score=26.09 Aligned_cols=58 Identities=14% Similarity=0.067 Sum_probs=36.2
Q ss_pred EEEEec-ccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCH
Q 008168 346 MFYFST-HSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTK 412 (575)
Q Consensus 346 ~v~~sg-~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~ 412 (575)
.|.++| -+++ ..+.+.++++.+++.|..+.++.|.....+ .+.+..+++.+|.+.++.
T Consensus 73 ~V~~sGGEPll---~~~~~~~l~~~~k~~g~~i~l~TNG~~~~~------~~~~~~ll~~~d~v~isl 131 (246)
T PRK11145 73 GVTASGGEAIL---QAEFVRDWFRACKKEGIHTCLDTNGFVRRY------DPVIDELLDVTDLVMLDL 131 (246)
T ss_pred eEEEeCccHhc---CHHHHHHHHHHHHHcCCCEEEECCCCCCcc------hHHHHHHHHhCCEEEECC
Confidence 566665 2322 345567889999999999999877543211 234555666677665543
No 148
>PRK07582 cystathionine gamma-lyase; Validated
Probab=21.79 E-value=4e+02 Score=28.32 Aligned_cols=21 Identities=10% Similarity=0.108 Sum_probs=15.4
Q ss_pred HHHHHHHHhhcCCEEEEcCCC
Q 008168 363 TLQAIKISKQFGGIIFYDVNL 383 (575)
Q Consensus 363 ~~~~l~~ak~~G~~Vv~D~~~ 383 (575)
+.++++.|+++|+.+++|-.+
T Consensus 151 i~~I~~~a~~~g~~lvVD~t~ 171 (366)
T PRK07582 151 LAALAAAAHAAGALLVVDNTT 171 (366)
T ss_pred HHHHHHHHHHcCCEEEEECCC
Confidence 456677777788888888653
No 149
>PF08070 DTHCT: DTHCT (NUC029) region; InterPro: IPR012542 The DTCHT region is the C-terminal part of DNA gyrases B / topoisomerase IV / HATPase proteins []. This region is composed of quite low complexity sequence.; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0005634 nucleus
Probab=21.73 E-value=1.2e+02 Score=26.21 Aligned_cols=8 Identities=25% Similarity=0.331 Sum_probs=3.7
Q ss_pred hccccccc
Q 008168 145 RRRRKTTK 152 (575)
Q Consensus 145 ~~~~~~~~ 152 (575)
-..+|+++
T Consensus 58 ~~~KK~Kk 65 (96)
T PF08070_consen 58 VASKKSKK 65 (96)
T ss_pred cccccccc
Confidence 34445544
No 150
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.64 E-value=63 Score=36.59 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=5.7
Q ss_pred CCCCCCcccccccc
Q 008168 114 SKDTKKTPRMTRRK 127 (575)
Q Consensus 114 ~~~~~~~~~~~~~~ 127 (575)
..++||+++|+.||
T Consensus 89 k~k~KKK~krkkKk 102 (665)
T KOG2422|consen 89 KNKKKKKKKRKKKK 102 (665)
T ss_pred ccccchhhhhcccc
Confidence 33344444444443
No 151
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=21.63 E-value=3.6e+02 Score=29.39 Aligned_cols=109 Identities=17% Similarity=0.283 Sum_probs=58.3
Q ss_pred CceEEecCChHHHHHHHHHHc--CCCeEEEEE-eCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEE
Q 008168 244 EKFIRSPGGCTGSAAIALARL--GGKVAFMGK-LGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRM 320 (575)
Q Consensus 244 ~~~~~~~GG~a~NvA~aLarL--G~~v~lig~-VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~ 320 (575)
......+-|.++-.+..++-+ |..+.+... .|. .=+++...|++.||++.++ ++. +. .
T Consensus 79 ~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~--t~~~~~~~l~~~gi~~~~~--d~~--~~----------~--- 139 (396)
T COG0626 79 EDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGG--TYRLFEKILQKFGVEVTFV--DPG--DD----------E--- 139 (396)
T ss_pred CcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccch--HHHHHHHHHHhcCeEEEEE--CCC--Ch----------H---
Confidence 445567778877666666665 444443332 221 1245666677788876543 111 00 0
Q ss_pred EEecCCccccCCccccchhhh-ccCcEEEEecc--cccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccc
Q 008168 321 TCVKPCAEDALTKSEINIDVL-KEAKMFYFSTH--SMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLW 388 (575)
Q Consensus 321 ~~~~~ga~~~lt~~~i~~~~l-~~ad~v~~sg~--~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~ 388 (575)
.+..... .+.++|++... +.+. ...+..+.+.|+++|+.+++|-.+..+++
T Consensus 140 --------------~~~~~~~~~~tk~v~lEtPsNP~l~---v~DI~~i~~~A~~~g~~vvVDNTfatP~~ 193 (396)
T COG0626 140 --------------ALEAAIKEPNTKLVFLETPSNPLLE---VPDIPAIARLAKAYGALVVVDNTFATPVL 193 (396)
T ss_pred --------------HHHHHhcccCceEEEEeCCCCcccc---cccHHHHHHHHHhcCCEEEEECCcccccc
Confidence 0000111 24556666542 1111 12346677888889999999987666653
No 152
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=21.62 E-value=1e+02 Score=37.95 Aligned_cols=12 Identities=33% Similarity=0.443 Sum_probs=6.6
Q ss_pred cCccChhHHHHH
Q 008168 489 SDMSASGDGIVA 500 (575)
Q Consensus 489 VDttGAGDaF~A 500 (575)
-|..|-||++.-
T Consensus 2106 edkr~R~DaLhY 2117 (3015)
T KOG0943|consen 2106 EDKRARGDALHY 2117 (3015)
T ss_pred hhhhcchhHHHH
Confidence 455566666543
No 153
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=21.25 E-value=86 Score=35.09 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=11.1
Q ss_pred cchhhhhhhhhhccccccccc
Q 008168 134 GMEEEKTEKKVRRRRKTTKKI 154 (575)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~ 154 (575)
..++..+.++.+++||.++..
T Consensus 259 ~~kkk~~~~~~~~krkkk~d~ 279 (555)
T KOG2393|consen 259 DNKKKTTTAKGATKRKKKKDV 279 (555)
T ss_pred cccccccccccccccccccCC
Confidence 344444555656666655543
No 154
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=20.81 E-value=7.1e+02 Score=26.25 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=27.2
Q ss_pred cCcEEEEeccccccc-chHHHHHHHHHHHhhcCCEEEEcCCC
Q 008168 343 EAKMFYFSTHSMLER-NMKSTTLQAIKISKQFGGIIFYDVNL 383 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~-~~~e~~~~~l~~ak~~G~~Vv~D~~~ 383 (575)
+.++|+++|...... ...+.+.++++.++++|+.+++|-.+
T Consensus 136 ~~~lIiitg~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy 177 (346)
T TIGR03576 136 GTSLVVITGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDAS 177 (346)
T ss_pred CceEEEEECCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCc
Confidence 356777776432111 12466778888899999999999543
No 155
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=20.70 E-value=6e+02 Score=27.96 Aligned_cols=41 Identities=10% Similarity=0.035 Sum_probs=25.9
Q ss_pred HHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCH
Q 008168 363 TLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTK 412 (575)
Q Consensus 363 ~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~ 412 (575)
+.++.+.|+++|+++++|.....+.. ...+--.+|++..+-
T Consensus 174 i~~I~~la~~~gi~livD~t~a~g~~---------~~p~~~GaDivv~S~ 214 (437)
T PRK05613 174 IPAVAEVAHRNQVPLIVDNTIATAAL---------VRPLELGADVVVASL 214 (437)
T ss_pred HHHHHHHHHHcCCeEEEECCCccccc---------cChHHhCCCEEEeec
Confidence 46677888899999999976433221 111112578877665
No 156
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=20.55 E-value=5.1e+02 Score=27.50 Aligned_cols=93 Identities=13% Similarity=0.227 Sum_probs=49.6
Q ss_pred CeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcE
Q 008168 267 KVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKM 346 (575)
Q Consensus 267 ~v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~ 346 (575)
++.++|.-| ..|..+++.|.+.+.....+...... ...|+. +.+ .+ ..+..++++...+.++|+
T Consensus 6 ~IaIvGATG--~vG~eLlrlL~~~~hP~~~l~~v~s~---------~~aG~~-l~~--~~--~~l~~~~~~~~~~~~vD~ 69 (336)
T PRK05671 6 DIAVVGATG--TVGEALVQILEERDFPVGTLHLLASS---------ESAGHS-VPF--AG--KNLRVREVDSFDFSQVQL 69 (336)
T ss_pred EEEEEccCC--HHHHHHHHHHhhCCCCceEEEEEECc---------ccCCCe-ecc--CC--cceEEeeCChHHhcCCCE
Confidence 456666655 47999999998655433222111110 011332 111 11 123333333233578999
Q ss_pred EEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCC
Q 008168 347 FYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNL 383 (575)
Q Consensus 347 v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~ 383 (575)
+++.. +.+....++..+.+.|+ .++|.+.
T Consensus 70 vFla~-------p~~~s~~~v~~~~~~G~-~VIDlS~ 98 (336)
T PRK05671 70 AFFAA-------GAAVSRSFAEKARAAGC-SVIDLSG 98 (336)
T ss_pred EEEcC-------CHHHHHHHHHHHHHCCC-eEEECch
Confidence 98862 23455667777777776 4789764
No 157
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=20.34 E-value=7.5e+02 Score=24.30 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=19.9
Q ss_pred CceEEecCChHHHHHHHHHHcCCC
Q 008168 244 EKFIRSPGGCTGSAAIALARLGGK 267 (575)
Q Consensus 244 ~~~~~~~GG~a~NvA~aLarLG~~ 267 (575)
.-...-.||.|..+|..|+++|..
T Consensus 23 ~VlivG~GglGs~va~~La~~Gvg 46 (228)
T cd00757 23 RVLVVGAGGLGSPAAEYLAAAGVG 46 (228)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCC
Confidence 445567899999999999999963
No 158
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=20.22 E-value=5.3e+02 Score=27.57 Aligned_cols=95 Identities=18% Similarity=0.273 Sum_probs=52.7
Q ss_pred CCCeEEEEEeCCChHHHHHHHHHHh-CCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhcc
Q 008168 265 GGKVAFMGKLGDDEYGQAMLYYMNV-NNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKE 343 (575)
Q Consensus 265 G~~v~lig~VG~D~~G~~l~~~L~~-~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ 343 (575)
+.++.++|.-| ..|+.+++.|.. -.+....+...... ...|+. +.+. +. .+....++...+.+
T Consensus 5 ~~~VaIvGATG--~vG~ell~lL~~h~~f~v~~l~~~aS~---------~saGk~-~~~~--~~--~l~v~~~~~~~~~~ 68 (347)
T PRK06728 5 GYHVAVVGATG--AVGQKIIELLEKETKFNIAEVTLLSSK---------RSAGKT-VQFK--GR--EIIIQEAKINSFEG 68 (347)
T ss_pred CCEEEEEeCCC--HHHHHHHHHHHHCCCCCcccEEEEECc---------ccCCCC-eeeC--Cc--ceEEEeCCHHHhcC
Confidence 35677777766 489999999984 66664433221111 012222 1111 11 23333333445578
Q ss_pred CcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCC
Q 008168 344 AKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNL 383 (575)
Q Consensus 344 ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~ 383 (575)
.|+++++. +.+...++...+.+.|+ +++|.+.
T Consensus 69 ~Divf~a~-------~~~~s~~~~~~~~~~G~-~VID~Ss 100 (347)
T PRK06728 69 VDIAFFSA-------GGEVSRQFVNQAVSSGA-IVIDNTS 100 (347)
T ss_pred CCEEEECC-------ChHHHHHHHHHHHHCCC-EEEECch
Confidence 89998873 33455666776766774 6688764
No 159
>KOG2897 consensus DNA-binding protein YL1 and related proteins [General function prediction only]
Probab=20.10 E-value=52 Score=35.16 Aligned_cols=8 Identities=25% Similarity=0.543 Sum_probs=3.6
Q ss_pred CcccccCC
Q 008168 156 DETEDQGN 163 (575)
Q Consensus 156 ~~~~~~~~ 163 (575)
.+.|++|.
T Consensus 46 ~DeEyE~~ 53 (390)
T KOG2897|consen 46 HDEEYEGE 53 (390)
T ss_pred cchhhhhh
Confidence 34455543
No 160
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=20.10 E-value=8.2e+02 Score=26.21 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=25.7
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCc
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLP 386 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~ 386 (575)
+.++|++.......-... .+.++.+.|+++|+.|++|-.+..+
T Consensus 137 ~tklV~ie~p~NPtG~v~-dl~~I~~la~~~gi~livD~t~a~~ 179 (385)
T PRK08574 137 RTKLVFIETMTNPTLKVI-DVPEVAKAAKELGAILVVDNTFATP 179 (385)
T ss_pred CceEEEEECCCCCCCEec-CHHHHHHHHHHcCCEEEEECCCCcc
Confidence 456777764321000011 1456778889999999999765433
Done!