Query 008168
Match_columns 575
No_of_seqs 296 out of 2034
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 19:46:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iq0_A Putative ribokinase II; 100.0 1.7E-47 6E-52 398.8 31.4 323 203-572 2-326 (330)
2 3ljs_A Fructokinase; fructokia 100.0 8E-47 2.7E-51 394.9 27.9 318 203-555 3-328 (338)
3 3pl2_A Sugar kinase, ribokinas 100.0 8.9E-46 3E-50 383.5 33.3 309 203-555 7-317 (319)
4 4du5_A PFKB; structural genomi 100.0 2.8E-45 9.6E-50 383.5 33.8 306 204-552 26-334 (336)
5 3hj6_A Fructokinase, FRK; fruc 100.0 1.6E-46 5.3E-51 391.2 20.6 308 202-554 19-326 (327)
6 3h49_A Ribokinase; transferase 100.0 4.1E-45 1.4E-49 380.1 30.3 316 203-560 4-319 (325)
7 1v1a_A 2-keto-3-deoxygluconate 100.0 2.2E-44 7.6E-49 371.6 33.6 302 204-557 1-305 (309)
8 3ktn_A Carbohydrate kinase, PF 100.0 1.5E-44 5E-49 378.7 32.7 316 204-557 2-333 (346)
9 2v78_A Fructokinase; transfera 100.0 1.4E-44 4.7E-49 373.8 31.3 304 204-555 1-310 (313)
10 2qcv_A Putative 5-dehydro-2-de 100.0 5E-44 1.7E-48 372.4 35.4 313 204-556 11-326 (332)
11 3ewm_A Uncharacterized sugar k 100.0 5.7E-44 1.9E-48 369.4 32.5 297 204-555 1-300 (313)
12 1tyy_A Putative sugar kinase; 100.0 1.1E-44 3.8E-49 379.6 27.3 309 202-557 22-331 (339)
13 2dcn_A Hypothetical fructokina 100.0 7.2E-44 2.5E-48 367.8 30.1 302 204-555 1-308 (311)
14 3ry7_A Ribokinase; transferase 100.0 1.1E-43 3.8E-48 365.0 29.1 301 204-552 2-304 (304)
15 1rkd_A Ribokinase; carbohydrat 100.0 2.5E-43 8.6E-48 363.5 31.7 303 203-555 3-307 (309)
16 4e69_A 2-dehydro-3-deoxyglucon 100.0 4E-43 1.4E-47 366.1 32.7 296 197-541 16-317 (328)
17 3lhx_A Ketodeoxygluconokinase; 100.0 1.5E-43 5.2E-48 367.1 28.9 288 205-540 5-303 (319)
18 3kzh_A Probable sugar kinase; 100.0 1.2E-43 4E-48 369.6 28.0 309 201-559 3-313 (328)
19 4gm6_A PFKB family carbohydrat 100.0 2.2E-43 7.7E-48 370.4 29.2 316 203-559 23-348 (351)
20 4e3a_A Sugar kinase protein; s 100.0 2.3E-43 7.9E-48 371.6 29.3 315 199-552 18-349 (352)
21 2rbc_A Sugar kinase, AGR_C_456 100.0 3.4E-42 1.2E-46 361.5 31.9 296 204-555 29-328 (343)
22 3vas_A Putative adenosine kina 100.0 1E-42 3.6E-47 369.0 28.1 316 197-550 15-365 (370)
23 3go6_A Ribokinase RBSK; phosph 100.0 3.8E-42 1.3E-46 356.1 30.5 284 202-555 17-304 (310)
24 2c4e_A Sugar kinase MJ0406; tr 100.0 1.1E-42 3.9E-47 357.9 25.7 296 203-555 4-299 (302)
25 3ikh_A Carbohydrate kinase; tr 100.0 1.8E-42 6.1E-47 356.3 24.9 286 204-558 2-291 (299)
26 2fv7_A Ribokinase; structural 100.0 9.7E-42 3.3E-46 355.7 30.3 303 202-551 22-328 (331)
27 2pkf_A Adenosine kinase; trans 100.0 1.7E-41 5.8E-46 354.5 29.5 306 198-555 4-319 (334)
28 2nwh_A AGR_C_3442P, carbohydra 100.0 1E-41 3.4E-46 353.4 26.5 301 203-555 2-307 (317)
29 1vm7_A Ribokinase; TM0960, str 100.0 2.6E-41 9E-46 349.7 29.1 295 204-554 14-309 (311)
30 2qhp_A Fructokinase; NP_810670 100.0 1.8E-41 6E-46 347.3 27.1 285 204-545 3-289 (296)
31 3uq6_A Adenosine kinase, putat 100.0 9E-42 3.1E-46 362.0 25.2 316 206-553 28-370 (372)
32 3otx_A Adenosine kinase, putat 100.0 1.8E-41 6.1E-46 355.6 26.2 309 204-546 7-342 (347)
33 3loo_A Anopheles gambiae adeno 100.0 1.2E-41 4E-46 360.1 23.5 310 205-547 24-359 (365)
34 3b1n_A Ribokinase, putative; r 100.0 8.4E-41 2.9E-45 348.2 28.6 297 205-555 1-305 (326)
35 2afb_A 2-keto-3-deoxygluconate 100.0 3E-40 1E-44 346.9 32.6 320 202-555 10-343 (351)
36 3ie7_A LIN2199 protein; phosph 100.0 3.3E-39 1.1E-43 334.5 31.7 303 205-569 3-315 (320)
37 3umo_A 6-phosphofructokinase i 100.0 5.1E-39 1.7E-43 331.3 31.9 296 204-555 1-306 (309)
38 2jg1_A Tagatose-6-phosphate ki 100.0 3.5E-39 1.2E-43 336.5 30.9 297 202-555 18-324 (330)
39 1bx4_A Protein (adenosine kina 100.0 1.1E-39 3.8E-44 341.5 27.1 310 203-546 5-341 (345)
40 2ajr_A Sugar kinase, PFKB fami 100.0 2.2E-39 7.6E-44 337.9 26.7 298 203-555 11-324 (331)
41 4e84_A D-beta-D-heptose 7-phos 100.0 2E-39 6.9E-44 341.7 25.9 298 202-550 51-351 (352)
42 3cqd_A 6-phosphofructokinase i 100.0 1.3E-38 4.6E-43 328.1 29.9 295 204-555 1-306 (309)
43 2f02_A Tagatose-6-phosphate ki 100.0 3.3E-38 1.1E-42 327.8 31.1 294 205-555 3-307 (323)
44 3kd6_A Carbohydrate kinase, PF 100.0 1.1E-38 3.7E-43 330.2 26.8 292 205-556 3-298 (313)
45 2abs_A Adenosine kinase, AK; r 100.0 1.6E-38 5.4E-43 338.1 28.7 313 201-540 29-375 (383)
46 2hlz_A Ketohexokinase; non-pro 100.0 7.2E-38 2.5E-42 323.9 29.7 282 203-540 16-309 (312)
47 3bf5_A Ribokinase related prot 100.0 2.4E-39 8.4E-44 334.4 18.1 283 200-555 16-300 (306)
48 2abq_A Fructose 1-phosphate ki 100.0 1.3E-37 4.4E-42 320.6 29.8 292 205-556 1-298 (306)
49 2jg5_A Fructose 1-phosphate ki 100.0 3.3E-37 1.1E-41 317.0 30.6 291 205-555 1-297 (306)
50 1vk4_A PFKB carbohydrate kinas 100.0 5.1E-35 1.7E-39 300.6 18.7 276 206-549 13-292 (298)
51 2yxt_A Pyridoxal kinase; beta 99.9 7.6E-23 2.6E-27 211.2 13.9 221 267-536 12-269 (312)
52 2ddm_A Pyridoxine kinase; pyri 99.9 3.6E-22 1.2E-26 203.2 15.3 230 264-539 19-269 (283)
53 1jxh_A Phosphomethylpyrimidine 99.8 4.7E-20 1.6E-24 188.4 13.4 164 344-538 95-270 (288)
54 1ub0_A THID, phosphomethylpyri 99.8 2.4E-19 8E-24 179.6 14.0 164 343-537 70-244 (258)
55 2i5b_A Phosphomethylpyrimidine 99.8 6.4E-18 2.2E-22 170.5 20.0 166 343-537 74-250 (271)
56 3pzs_A PM kinase, pyridoxamine 99.7 6E-17 2.1E-21 165.6 16.7 169 342-536 76-259 (289)
57 3h74_A Pyridoxal kinase; PSI-I 99.7 8.7E-17 3E-21 164.0 16.4 165 343-536 74-248 (282)
58 3mbh_A Putative phosphomethylp 99.7 1.7E-16 6E-21 162.5 17.1 170 343-536 77-258 (291)
59 3zs7_A Pyridoxal kinase; trans 99.7 1.1E-15 3.7E-20 157.3 16.9 166 342-536 75-261 (300)
60 1ekq_A Hydroxyethylthiazole ki 99.4 8.9E-13 3E-17 133.6 14.9 189 339-553 54-253 (272)
61 3rm5_A Hydroxymethylpyrimidine 99.4 3.3E-12 1.1E-16 141.8 16.2 159 343-530 91-269 (550)
62 1v8a_A Hydroxyethylthiazole ki 98.9 1.2E-08 4E-13 102.9 12.9 169 339-531 52-222 (265)
63 3bgk_A SMU.573, putative uncha 98.7 1.1E-07 3.8E-12 97.9 12.9 155 339-535 121-284 (311)
64 2r3b_A YJEF-related protein; p 98.6 4.4E-07 1.5E-11 93.4 15.7 152 340-534 108-266 (310)
65 3dzv_A 4-methyl-5-(beta-hydrox 98.5 3.9E-06 1.3E-10 84.7 17.9 172 338-529 53-229 (273)
66 3drw_A ADP-specific phosphofru 98.4 4.3E-06 1.5E-10 89.9 17.0 166 247-421 113-319 (474)
67 3rss_A Putative uncharacterize 98.2 5.1E-06 1.7E-10 90.8 11.9 157 339-533 316-473 (502)
68 3rpz_A ADP/ATP-dependent NAD(P 98.2 1.5E-05 5E-10 80.8 14.1 172 341-553 96-271 (279)
69 1ua4_A Glucokinase, ADP-depend 98.1 3.9E-05 1.3E-09 82.5 15.6 160 249-421 109-302 (455)
70 1gc5_A ADP-dependent glucokina 97.7 0.00037 1.3E-08 75.0 15.1 159 249-419 117-313 (467)
71 3nl6_A Thiamine biosynthetic b 97.7 0.0012 4E-08 72.8 18.4 168 339-529 301-495 (540)
72 1l2l_A ADP-dependent glucokina 97.6 0.00032 1.1E-08 75.4 12.8 159 249-419 112-303 (457)
73 3hpd_A Hydroxyethylthiazole ki 97.6 0.00089 3.1E-08 67.0 14.4 154 339-509 52-207 (265)
74 3k5w_A Carbohydrate kinase; 11 96.1 0.061 2.1E-06 58.2 14.3 170 342-555 291-466 (475)
75 3ukx_C Bimax2 peptide; arm rep 53.8 2.7 9.4E-05 25.7 0.0 9 145-153 5-13 (28)
76 3can_A Pyruvate-formate lyase- 43.4 1.4E+02 0.0049 26.4 10.2 65 346-421 6-76 (182)
77 3bc8_A O-phosphoseryl-tRNA(SEC 22.6 2.6E+02 0.009 29.4 9.1 137 244-412 117-264 (450)
78 3fdb_A Beta C-S lyase, putativ 22.5 4.5E+02 0.015 25.4 10.6 41 343-383 150-192 (377)
79 3hl2_A O-phosphoseryl-tRNA(SEC 22.2 2.1E+02 0.0073 30.6 8.1 136 244-411 135-281 (501)
80 3kgw_A Alanine-glyoxylate amin 20.4 2.2E+02 0.0075 27.9 7.7 107 246-382 77-186 (393)
No 1
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} SCOP: c.72.1.0 PDB: 3k9e_A
Probab=100.00 E-value=1.7e-47 Score=398.83 Aligned_cols=323 Identities=18% Similarity=0.233 Sum_probs=261.6
Q ss_pred CCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCC-CceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008168 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAP-EKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 203 ~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~-~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~ 281 (575)
.|++|+|||++++|++..... ...... ......+||+++|+|++|++||.++.++|.||+|.+|+
T Consensus 2 ~m~~i~viG~~~~D~~~~~~~--------------~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~ 67 (330)
T 3iq0_A 2 SLSKVFTIGEILVEIMASKIG--------------QPFDQPGIWNGPYPSGAPAIFIDQVTRLGVPCGIISCVGNDGFGD 67 (330)
T ss_dssp --CEEEEESCCEEEEEEEEET--------------CCSSSCEEEEEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHH
T ss_pred CCCCEEEEcceeEEEeccCCC--------------CCccccccccCcCCCCHHHHHHHHHHHCCCcEEEEEEeCCChHHH
Confidence 477899999999999974210 001111 12357899999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEE-ecCCccccCCccccchhhhccCcEEEEecccccccchH
Q 008168 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTC-VKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMK 360 (575)
Q Consensus 282 ~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~-~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~ 360 (575)
++++.|++.||++.++.+.++.+|+++++.++.+|++++.+ ...++...++++++....+..+++||++|+.+..+...
T Consensus 68 ~i~~~l~~~gv~~~~v~~~~~~~T~~~~i~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~v~~sg~~~~~~~~~ 147 (330)
T 3iq0_A 68 INIHRLAADGVDIRGISVLPLEATGSAFVTYHNSGDRDFIFNIKNAACGKLSAQHVDENILKDCTHFHIMGSSLFSFHMV 147 (330)
T ss_dssp HHHHHHHHTTCBCTTEEEETTSCCEEEEEEECC---CEEEEECTTSGGGGCCGGGCCGGGGTTEEEEEEEGGGCSSHHHH
T ss_pred HHHHHHHHcCCCeeeEEEcCCCCceEEEEEECCCCCeeEEEeccCChhhhCCHhhCCHhHhccCCEEEEechhhcCcchH
Confidence 99999999999999998888889999999998889985543 44557777888888777889999999999866566677
Q ss_pred HHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCC
Q 008168 361 STTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHY 440 (575)
Q Consensus 361 e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~ 440 (575)
+.+.++++.++++|++|+|||+++..+|... ...+.+..+++++|+|++|.+|+..|+|...
T Consensus 148 ~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~-~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~----------------- 209 (330)
T 3iq0_A 148 DAVKKAVTIVKANGGVISFDPNIRKEMLDIP-EMRDALHFVLELTDIYMPSEGEVLLLSPHST----------------- 209 (330)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCGGGGGSH-HHHHHHHHHHHTCSEECCBGGGTTTTCSCSS-----------------
T ss_pred HHHHHHHHHHHHcCCEEEEcCCCCccccCcH-HHHHHHHHHHhhCCEEecCHHHHHHHhCCCC-----------------
Confidence 8889999999999999999999988888643 3567788899999999999999999988631
Q ss_pred cHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHH
Q 008168 441 EPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLV 520 (575)
Q Consensus 441 ~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~ 520 (575)
..++++.|++.|++.||||+|++|+++++++...++++ ++++ ++|||||||+|+|||+++|++| +++.
T Consensus 210 ~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~---~~v~--vvdttGAGDaf~a~~~~~l~~g-------~~~~ 277 (330)
T 3iq0_A 210 PERAIAGFLEEGVKEVIVKRGNQGASYYSANEQFHVES---YPVE--EVDPTGAGDCFGGAWIACRQLG-------FDAH 277 (330)
T ss_dssp HHHHHHHHHHHTCSEEEEECGGGCEEEECSSCEEEECC---CCCC--CSCCTTHHHHHHHHHHHHHHTT-------CCHH
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCceEEEECCceEEecC---CCCc--cCCCCChHHHHHHHHHHHHHcC-------CCHH
Confidence 23667788888999999999999999998876556655 3454 8999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCCCCCCcccccccccccCC
Q 008168 521 RTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEPDPYGIRSMTEKEYRTLK 572 (575)
Q Consensus 521 eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~~~~~~~~~~~~~~~~~~ 572 (575)
+|+++|+++|+++|++.|+..++|++++|++++++.. ..|.+++|+.+.
T Consensus 278 ~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~~~~~~---~~i~~~~~~~~~ 326 (330)
T 3iq0_A 278 RALQYANACGALAVTRRGPMEGTSRLMEIETFIQRHD---MSIREAAQEGHH 326 (330)
T ss_dssp HHHHHHHHHHHHHTTSCSSSTTCCCHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHHHHcCcCCCCCCCCHHHHHHHHHhcc---cchhHHHhcccc
Confidence 9999999999999999999889999999999999887 555577777654
No 2
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} SCOP: c.72.1.0 PDB: 3lki_A*
Probab=100.00 E-value=8e-47 Score=394.90 Aligned_cols=318 Identities=24% Similarity=0.421 Sum_probs=258.5
Q ss_pred CCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008168 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 203 ~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~ 282 (575)
.+++|+|||++++|++.... ++|. + +..+...+||+++|+|++|++||.+|.++|.||+|.+|++
T Consensus 3 ~~~~v~viG~~~iD~~~~~~---~~~~--------~----~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~g~~ 67 (338)
T 3ljs_A 3 LKKTILCFGEALIDMLAQPL---VKKG--------M----PRAFLQCAGGAPANVAVAVARLGGAVQFVGMLGSDMFGDF 67 (338)
T ss_dssp -CCEEEEESCCEEEEEECCC---SSTT--------S----CCCEEEEEECHHHHHHHHHHHHTCCEEEESEEESSHHHHH
T ss_pred CCCCEEEEChhhhheeccCC---CCcc--------c----hhceeecCCChHHHHHHHHHhCCCCEEEEeeccCCHHHHH
Confidence 45789999999999998752 3331 1 3678899999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEE-ecCCccccCCccccchhhhccCcEEEEecccccccchHH
Q 008168 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTC-VKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKS 361 (575)
Q Consensus 283 l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~-~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e 361 (575)
+++.|++.||+++++.+.++.+|+++++.++.+|++++.+ ..++++..++++++....+..+++||++++.+..+...+
T Consensus 68 l~~~l~~~gV~~~~v~~~~~~~T~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 147 (338)
T 3ljs_A 68 LFDSFAEAGVVTDGIVRTSTAKTALAFVALDAHGERSFSFYRPPAADLLFRVEHFQDASFSDALIFHACSNSMTDADIAE 147 (338)
T ss_dssp HHHHHHHHTCBCTTCEEESSSCCCEEEEECCSTTCCEEEEECSSCGGGGCCGGGCCHHHHHTEEEEEEEGGGGSSHHHHH
T ss_pred HHHHHHHcCCCceeEEEcCCCCceEEEEEECCCCCeEEEEeCCCChhHhCCHhhcCHhHhcCCCEEEECChHhcCchHHH
Confidence 9999999999999998888889999999998889988754 345777788888887777889999999998766666788
Q ss_pred HHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCc
Q 008168 362 TTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYE 441 (575)
Q Consensus 362 ~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~ 441 (575)
.+.++++.++++|++|+|||+++..+|.+.....+.+.++++++|||++|.+|+..|+|..... .
T Consensus 148 ~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~---------------~ 212 (338)
T 3ljs_A 148 VTFEGMRRAQAAGAIVSFDLNFRPMLWPNGENPASRLWKGLSLADVVKLSSEELDYLANTLAAD---------------A 212 (338)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCCGGGSCTTCCTHHHHHHHHHTCSEEEEEHHHHHHHHHHHTSC---------------H
T ss_pred HHHHHHHHHHHcCCEEEEECCCChhhcCCHHHHHHHHHHHHhhCCEEEecHHHHHHHhCCCChh---------------H
Confidence 9999999999999999999999999997666667888899999999999999999998754221 0
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCC-------C
Q 008168 442 PEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLI-------T 514 (575)
Q Consensus 442 ~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~-------~ 514 (575)
.++++.|++.|++.||||+|.+|+++++++...++++ ++++ ++|||||||+|+|||+++|++|+... .
T Consensus 213 ~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~---~~v~--vvDttGAGDaF~a~~~~~l~~g~~~~~~~~~~~~ 287 (338)
T 3ljs_A 213 NAVIQQLWQGRAQLLLVTDAAGPVHWYTRTAGGEVPT---FRVQ--VQDSNAAGDAFVGGMLYTFAQQFDDAAALIDFCH 287 (338)
T ss_dssp HHHHHHHTTTTCCEEEEEETTEEEEEEESSCEEEECC----------------CHHHHHHHHHHHHHHCSSTHHHHHHHT
T ss_pred HHHHHHHHhcCCCEEEEeeCCCceEEEECCceEEeCC---CCCc--cCCCCCccHHHHHHHHHHHHhCCCcccchhcccc
Confidence 1267788888999999999999999999876666655 3454 89999999999999999999872100 0
Q ss_pred CchhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 515 DKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 515 d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
+.+++++|+++|+++|+++|++.|+..++|++++|++++.+
T Consensus 288 ~~~~l~~al~~A~~~aa~~v~~~Ga~~~~p~~~ev~~~~~~ 328 (338)
T 3ljs_A 288 DPESIVSTLRFAAAVGALAVTRQGAFTAMPMLSEVLSLIQE 328 (338)
T ss_dssp CHHHHHHHHHHHHHHHGGGC----CCCCTTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHhh
Confidence 11589999999999999999999999999999999999864
No 3
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} SCOP: c.72.1.0
Probab=100.00 E-value=8.9e-46 Score=383.47 Aligned_cols=309 Identities=18% Similarity=0.233 Sum_probs=262.8
Q ss_pred CCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008168 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 203 ~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~ 282 (575)
.+++|+|||++++|+++.. +.+|.+ ....+...+||+++|+|++|++||.++.++|.||+|.+|++
T Consensus 7 ~~~~v~~iG~~~~D~~~~~---~~~p~~-----------~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~ 72 (319)
T 3pl2_A 7 STHEVLAIGRLGVDIYPLQ---SGVGLA-----------DVQSFGKYLGGSAANVSVAAARHGHNSALLSRVGNDPFGEY 72 (319)
T ss_dssp CCCSEEEESCCEEEECBSS---SSCCGG-----------GCCCBCCEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHH
T ss_pred cCCCEEEEChhheeeeccc---CCCCcc-----------ccceeeecCCCcHHHHHHHHHHCCCceEEEEEeCCCHHHHH
Confidence 3468999999999999764 223311 23667789999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEe-cCCc-cccCCccccchhhhccCcEEEEecccccccchH
Q 008168 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCV-KPCA-EDALTKSEINIDVLKEAKMFYFSTHSMLERNMK 360 (575)
Q Consensus 283 l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~-~~ga-~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~ 360 (575)
+++.|++.||+++++.+.++.+|+++++.++.+|++.+.+. .+++ ...+++++++...+..++++|++|+.+......
T Consensus 73 i~~~l~~~gv~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (319)
T 3pl2_A 73 LLAELERLGVDNQYVATDQTFKTPVTFCEIFPPDDFPLYFYREPKAPDLNIESADVSLDDVREADILWFTLTGFSEEPSR 152 (319)
T ss_dssp HHHHHHHTTEECTTEEEESSSCCCEEEECCBTTTBCCEEEECCSCCGGGGCCGGGSCHHHHHHCSEEEEEGGGGSSTTHH
T ss_pred HHHHHHHcCCccccEEecCCCCceEEEEEEcCCCCeeEEEecCCCcccccCChhhCCHHHhccCCEEEEecccccCchhH
Confidence 99999999999999988888899999998887788766533 3445 567888888878889999999999865544455
Q ss_pred HHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCC
Q 008168 361 STTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHY 440 (575)
Q Consensus 361 e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~ 440 (575)
..+..+++.+++ +.+++||++++..+|.+.....+.+..+++++|+|++|++|+..|+|...
T Consensus 153 ~~~~~~~~~~~~-~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~----------------- 214 (319)
T 3pl2_A 153 GTHREILTTRAN-RRHTIFDLDYRPMFWESPEEATKQAEWALQHSTVAVGNKEECEIAVGETE----------------- 214 (319)
T ss_dssp HHHHHHHHHHTT-CSCEEEECCCCGGGSSCHHHHHHHHHHHHTTCSEEEECHHHHHHHHSCCS-----------------
T ss_pred HHHHHHHHHHHH-CCcEEEeCCCChhhcCCHHHHHHHHHHHHHhCCEEEcCHHHHHHHcCCCC-----------------
Confidence 667777777765 66789999999999987777788889999999999999999999998642
Q ss_pred cHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHH
Q 008168 441 EPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLV 520 (575)
Q Consensus 441 ~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~ 520 (575)
..+.++.|++.|++.||||+|.+|+++++++...++++ ++++ ++|||||||+|+|||+++|++| ++++
T Consensus 215 ~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvdttGAGDaf~a~~~~~l~~g-------~~~~ 282 (319)
T 3pl2_A 215 PERAGRALLERGVELAIVKQGPKGVMAMTKDETVEVPP---FFVD--VINGLGAGDAFGGALCHGLLSE-------WPLE 282 (319)
T ss_dssp HHHHHHHHHHTTCSEEEEEEETTEEEEECSSCEEEECC---CCCC--CSCCTTHHHHHHHHHHHHHHTT-------CCHH
T ss_pred HHHHHHHHHhcCCCEEEEEECCCCeEEEECCceEEeCC---cccC--CCCCcCchHHHHHHHHHHHHcC-------CCHH
Confidence 23667788888999999999999999998876555554 4454 8999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 521 RTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 521 eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
+|+++|+++|+++|++.|+..++|++++|+++|++
T Consensus 283 ~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~ 317 (319)
T 3pl2_A 283 KVLRFANTAGALVASRLECSTAMPTTDEVEASLNQ 317 (319)
T ss_dssp HHHHHHHHHHHHHHTSSCSGGGCCCHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHhccCCcCCCCCHHHHHHHHhc
Confidence 99999999999999999998889999999999865
No 4
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP}
Probab=100.00 E-value=2.8e-45 Score=383.45 Aligned_cols=306 Identities=22% Similarity=0.257 Sum_probs=251.7
Q ss_pred CCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008168 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l 283 (575)
+++|+|||++++|+++... ..+.....+...+||+++|+|++|++||.++.++|.||+|.+|+++
T Consensus 26 ~~~vlviG~~~iD~~~~~~---------------g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~G~~i 90 (336)
T 4du5_A 26 ALDVITFGEAMMLLVADRP---------------GPLEHAEAFHKRTAGAETNVAIGLARLGLKVGWASRLGTDSMGRYL 90 (336)
T ss_dssp CEEEEEECCCEEEEEESSS---------------SCGGGCCEEEEEEECHHHHHHHHHHHTTCCEEEEEEECSSHHHHHH
T ss_pred CCCEEEEChhhhhccCCCC---------------CccchhhheeecCCCHHHHHHHHHHhCCCcEEEEEEeCCCHHHHHH
Confidence 3579999999999997541 0112347788999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeE-EEE-ecCCccccCCccccchhhhccCcEEEEecccc-cccchH
Q 008168 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLR-MTC-VKPCAEDALTKSEINIDVLKEAKMFYFSTHSM-LERNMK 360 (575)
Q Consensus 284 ~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~-~~~-~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l-~~~~~~ 360 (575)
++.|++.||+++++.+.++.+|+++++.++.+|+++ +.+ ..+++...++++++....+..+++||++|+.+ +++...
T Consensus 91 ~~~L~~~GV~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~~~~~~~l~~~~~v~~~g~~~~~~~~~~ 170 (336)
T 4du5_A 91 LAAMAAEGIDCSHVVCDATQKTGFQFKGKVTDGSDPPVEYHRKGSAASHMGVADIDEAWLLSARHLHATGVFPAISATTL 170 (336)
T ss_dssp HHHHHTTTCEEEEEEECTTSCCCEEEECCCSCC--CCEEEECTTCTGGGCCGGGCCHHHHTTEEEEEEESSGGGSCTTHH
T ss_pred HHHHHHcCCCcceEEEcCCCCcEEEEEEEcCCCCcceEEEECCCChhHhCChhhCCHhHhccCCEEEEcCchhhCChHHH
Confidence 999999999999999888889999999988888544 322 45678888999988877889999999999643 455677
Q ss_pred HHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCC
Q 008168 361 STTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHY 440 (575)
Q Consensus 361 e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~ 440 (575)
+.+.++++.+++.|++|+|||++++.+|.......+.+.++++++|+|++|..|++.|+|...
T Consensus 171 ~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~dil~pN~~Ea~~l~g~~~----------------- 233 (336)
T 4du5_A 171 PAARKTMDLMRAAGRSVSFDPNLRPTLWATPELMRDAINDLATRADWVLPGMEEGRFLTGETT----------------- 233 (336)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCGGGSSSHHHHHHHHHHHHTTCSEECCBHHHHHHHHCCCS-----------------
T ss_pred HHHHHHHHHHHHCCCEEEEeCcCCchhcCChHHHHHHHHHHHHhCCEEECCHHHHHHHhCCCC-----------------
Confidence 888999999999999999999999999987666677888999999999999999999998631
Q ss_pred cHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHH
Q 008168 441 EPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLV 520 (575)
Q Consensus 441 ~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~ 520 (575)
..++++.|.+.|++.||||+|.+|+++++.+...++++ ++++ .++|||||||+|+|||+++|++| ++++
T Consensus 234 ~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~-~vvdttGAGDaf~a~~~~~l~~g-------~~l~ 302 (336)
T 4du5_A 234 PEGVARFYRQLGAKLVVVKLGAEGAYFDGEAGSGRVAG---FPVA-EVVDTVGAGDGFAVGVISALLDG-------LGVP 302 (336)
T ss_dssp HHHHHHHHHHTTCSEEEEECGGGCEEEEETTEEEEECC---CCC--------CHHHHHHHHHHHHHHTT-------CCHH
T ss_pred HHHHHHHHHhcCCCEEEEEecCCceEEEECCeEEEeCC---ccCC-CCCCCccchHHHHHHHHHHHHcC-------CCHH
Confidence 23667788888999999999999999998765555554 3443 17999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCCHHHHHHh
Q 008168 521 RTIKYAIDCGVRDQWSQARTLGYPPKEGMEEE 552 (575)
Q Consensus 521 eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~ 552 (575)
+|+++|+++|+++|++.|+..++|++++|+++
T Consensus 303 ~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~ 334 (336)
T 4du5_A 303 EAVKRGAWIGARAVQVLGDSEGLPTRAELNAA 334 (336)
T ss_dssp HHHHHHHHHHHHHHC------CCCCHHHHHCC
T ss_pred HHHHHHHHHHHHHhccCCCccCCCCHHHHHhc
Confidence 99999999999999999999899999999875
No 5
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii}
Probab=100.00 E-value=1.6e-46 Score=391.15 Aligned_cols=308 Identities=19% Similarity=0.263 Sum_probs=236.6
Q ss_pred CCCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008168 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 202 ~~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~ 281 (575)
+.|++|+|||++++|++.... ++|. ..+..+...+||+++|+|++|++||.++.++|.||+|.+|+
T Consensus 19 ~~~~~v~viG~~~~D~~~~~~---~~p~-----------~~~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~g~ 84 (327)
T 3hj6_A 19 KGDLDVVSLGEILVDMISTEE---VNSL-----------SQSREYTRHFGGSPANIAVNLSRLGKKVALISRLGADAFGN 84 (327)
T ss_dssp ---CCEEEESCCEEEEECCCC---CSSG-----------GGCCEEEEEEECHHHHHHHHHHHTTCCEEEECEEESSHHHH
T ss_pred cCCCCEEEEccceEEEeccCC---CCCc-----------cccceeeeecCcHHHHHHHHHHHcCCcEEEEEEeCCCHHHH
Confidence 456899999999999997652 3332 13477889999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHH
Q 008168 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKS 361 (575)
Q Consensus 282 ~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e 361 (575)
++++.|++.||+++++.+.++.+|+++++..+ +|++++. ...++...++++++....+..++++|++++.+..+...+
T Consensus 85 ~i~~~l~~~gv~~~~v~~~~~~~t~~~~v~~~-~g~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~v~~~g~~l~~~~~~~ 162 (327)
T 3hj6_A 85 YLLDVLKGEQIITDGIQQDKERRTTIVYVSKS-TRTPDWL-PYREADMYLQEDDIIFELIKRSKVFHLSTFILSRKPARD 162 (327)
T ss_dssp HHHHHHHHTTCBCTTCEEESSSCCCEEEECCC-TTCCCEE-EECSGGGGCCSCCCHHHHHC--CEEEEESHHHHSHHHHH
T ss_pred HHHHHHHHcCCCcccEEEcCCCCceEEEEEec-CCCccEE-EecChhhhCChhhcCHhHhccCCEEEECchHhcCchhHH
Confidence 99999999999999998888889999887765 5887765 445677788887776677899999999997654445678
Q ss_pred HHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCc
Q 008168 362 TTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYE 441 (575)
Q Consensus 362 ~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~ 441 (575)
.+.++++.++++|++|+|||+.+..+|.+.....+.+..+++++|+|++|++|+..|+|....
T Consensus 163 ~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~----------------- 225 (327)
T 3hj6_A 163 TAIKAFNYAREQGKIVCFDPCYRKVLWPEGDDGAGVVEEIISRADFVKPSLDDARHLFGPDSP----------------- 225 (327)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCCGGGSCSSSCSHHHHHHHHTTCSEECCBHHHHHHHHTTSCS-----------------
T ss_pred HHHHHHHHHHHCCCEEEEECCCchhhcCCHHHHHHHHHHHHhhCCEEecCHHHHHHHhCCCCH-----------------
Confidence 889999999999999999999988889876666778889999999999999999999986321
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHH
Q 008168 442 PEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVR 521 (575)
Q Consensus 442 ~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~e 521 (575)
.+.++.|.+.|++.||||+|++|+++++++...++++ ++++ ++|||||||+|+|||+++|++| +++++
T Consensus 226 ~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvdttGAGDaf~ag~~~~l~~g-------~~~~~ 293 (327)
T 3hj6_A 226 ENYVKRYLELGVKAVILTLGEEGVIASDGEEIIRIPA---FSED--AVDVTGAGDAFWSGFICGLLDG-------YTVKR 293 (327)
T ss_dssp SGGGGGGTTTTCSEEEEECSTTCEEEECSSCEEESCS---STTC-------CCHHHHHHHHHHTTSSC-------STTHH
T ss_pred HHHHHHHHhCCCCEEEEEECCCceEEEeCCeeEEcCC---cccc--cCCCcChhHHHHHHHHHHHHcC-------CCHHH
Confidence 1345567778999999999999999998765444443 4454 8999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCHHHHHHhhC
Q 008168 522 TIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVE 554 (575)
Q Consensus 522 Al~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~ 554 (575)
|+++|+++|+++|++.|+..++|++++|+++|+
T Consensus 294 a~~~A~a~aa~~v~~~G~~~~~p~~~ev~~~l~ 326 (327)
T 3hj6_A 294 SIKLGNGVAAFKIRGVGALSPVPSKEDIIKEYN 326 (327)
T ss_dssp HHHHHHCCCSSCC--------------------
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhc
Confidence 999999999999999999989999999999875
No 6
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A*
Probab=100.00 E-value=4.1e-45 Score=380.13 Aligned_cols=316 Identities=17% Similarity=0.143 Sum_probs=252.2
Q ss_pred CCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008168 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 203 ~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~ 282 (575)
.+++|+|||++++|++..... ..+. ..+. .....+...+||+++|+|++|++||.++.++|.||+|.+|++
T Consensus 4 ~~~~v~~iG~~~~D~~~~~~~--~~~~------~~~~-~p~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~G~~ 74 (325)
T 3h49_A 4 DNLDVICIGAAIVDIPLQPVS--KNIF------DVDS-YPLERIAMTTGGDAINEATIISRLGHRTALMSRIGKDAAGQF 74 (325)
T ss_dssp -CEEEEEESCCEEEEEECSCC--GGGG------GSSC-CCCSCCCCEEESHHHHHHHHHHHTTCEEEEECEEESSHHHHH
T ss_pred CCCeEEEEChhhheeeccCCC--Cccc------cccc-cchheeEEccCcHHHHHHHHHHHCCCCeEEEEEECCChHHHH
Confidence 456899999999999754311 1000 0000 112456789999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHH
Q 008168 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKST 362 (575)
Q Consensus 283 l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e~ 362 (575)
+++.|++.||+++++.+.++.+|++++++++.+|++++.+...++...+++++++...+..++++|++|+........+.
T Consensus 75 i~~~L~~~gV~~~~v~~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 154 (325)
T 3h49_A 75 ILDHCRKENIDIQSLKQDVSIDTSINVGLVTEDGERTFVTNRNGSLWKLNIDDVDFARFSQAKLLSLASIFNSPLLDGKA 154 (325)
T ss_dssp HHHHHHHHTCBCSSCEEETTSCCCEEEEEECTTSCEEEECCTTSHHHHCCGGGCCGGGGGGCSEEEEEEETTSTTSCHHH
T ss_pred HHHHHHHcCCceeeEEecCCCCCceEEEEECCCCceeEEeccCcccccCChhhcChhhhccCCEEEEecccCCcccCHHH
Confidence 99999999999999988888899999999998999887644344555678888877788999999999864322234567
Q ss_pred HHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcH
Q 008168 363 TLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEP 442 (575)
Q Consensus 363 ~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~ 442 (575)
+.++++.++++| .++||++.++.+|.. .+.+.++++++|+|++|+.|+..|+|... ..
T Consensus 155 ~~~~~~~a~~~~-~~~~d~~~~~~~~~~----~~~~~~~l~~~dil~~N~~E~~~l~g~~~-----------------~~ 212 (325)
T 3h49_A 155 LTEIFTQAKARQ-MIICADMIKPRLNET----LDDICEALSYVDYLFPNFAEAKLLTGKET-----------------LD 212 (325)
T ss_dssp HHHHHHHHHHTT-CEEEEEECCCSSCCC----HHHHHHHHTTCSEEECBHHHHHHHHTCSS-----------------HH
T ss_pred HHHHHHHHHhcC-CEEEecCCchhhhhH----HHHHHHHHhhCCEEecCHHHHHHHhCCCC-----------------HH
Confidence 889999999988 577887777777753 34567889999999999999999998642 13
Q ss_pred HHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHH
Q 008168 443 EVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRT 522 (575)
Q Consensus 443 e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eA 522 (575)
+.++.|...|++.||||+|.+|+++++++...+++++ ++. .++|||||||+|+|||+++|++| +++.+|
T Consensus 213 ~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~---~~~-~vvDttGAGDaf~ag~~~~l~~g-------~~~~~a 281 (325)
T 3h49_A 213 EIADCFLACGVKTVVIKTGKDGCFIKRGDMTMKVPAV---AGI-TAIDTIGAGDNFASGFIAALLEG-------KNLREC 281 (325)
T ss_dssp HHHHHHHTTTCSEEEEECTTSCEEEEETTEEEEECCC---SSC-CCSCCTTHHHHHHHHHHHHHHTT-------CCHHHH
T ss_pred HHHHHHHHcCCCEEEEEeCCCCeEEEECCeEEEecCc---CCC-CCcCCCChhHHHHHHHHHHHHcC-------CCHHHH
Confidence 5667788889999999999999999988755555543 331 27999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhcccccCCCCCCHHHHHHhhCCCCCCc
Q 008168 523 IKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEPDPYGI 560 (575)
Q Consensus 523 l~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~~~~~~ 560 (575)
+++|+++|+++|++.|+..++|++++|+++|++.+...
T Consensus 282 ~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~~~~~~ 319 (325)
T 3h49_A 282 ARFANATAAISVLSVGATTGVKNRKLVEQLLEEYEGEG 319 (325)
T ss_dssp HHHHHHHHHHHHTSSSSSSSCSSSHHHHTC--------
T ss_pred HHHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhccCCc
Confidence 99999999999999999999999999999998766543
No 7
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A
Probab=100.00 E-value=2.2e-44 Score=371.57 Aligned_cols=302 Identities=23% Similarity=0.244 Sum_probs=251.1
Q ss_pred CCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008168 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l 283 (575)
||+|+|||++++|+++... . .+.....+...+||+++|+|++|++||.++.++|.||+|.+|+++
T Consensus 1 m~~i~viG~~~~D~~~~~~--~-------------~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~D~~g~~i 65 (309)
T 1v1a_A 1 MLEVVTAGEPLVALVPQEP--G-------------HLRGKRLLEVYVGGAEVNVAVALARLGVKVGFVGRVGEDELGAMV 65 (309)
T ss_dssp CCSEEEESCCEEEEECSSS--S-------------CGGGCCEEEEEEECHHHHHHHHHHHHTCCEEEEEEECSSHHHHHH
T ss_pred CCcEEEEccceEEEecCCC--C-------------cccchheeeeecCcHHHHHHHHHHHcCCCeEEEEEeCCCHHHHHH
Confidence 6799999999999996321 0 111346788899999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEe-cCCccccCCccccchhhhccCcEEEEecccc-cccchHH
Q 008168 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCV-KPCAEDALTKSEINIDVLKEAKMFYFSTHSM-LERNMKS 361 (575)
Q Consensus 284 ~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~-~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l-~~~~~~e 361 (575)
++.|++.||++.++.+.++ +|+++++.++.+|++++.+. ..++...++++++....+..+++||++++.+ +++...+
T Consensus 66 ~~~L~~~gv~~~~v~~~~~-~t~~~~~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 144 (309)
T 1v1a_A 66 EERLRAEGVDLTHFRRAPG-FTGLYLREYLPLGQGRVFYYRKGSAGSALAPGAFDPDYLEGVRFLHLSGITPALSPEARA 144 (309)
T ss_dssp HHHHHHHTCBCTTEEECSS-CCCEEEEEECTTSCEEEEEECTTCSGGGCCTTSSCGGGGTTCSEEEEETTGGGSCHHHHH
T ss_pred HHHHHHcCCCCceEEEcCC-CCEEEEEEECCCCCceEEEeCCCChhhhCCHhhCChhHhcCCCEEEEeCchhccCchHHH
Confidence 9999999999999988887 99999999888888876533 3466677888888767788999999999754 3455678
Q ss_pred HHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCc
Q 008168 362 TTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYE 441 (575)
Q Consensus 362 ~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~ 441 (575)
.+.++++.++++|++|+|||+.+..+|. .+...+.+.++++++|+|++|.+|+..|+|..
T Consensus 145 ~~~~~~~~a~~~g~~v~~D~~~~~~~~~-~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~------------------- 204 (309)
T 1v1a_A 145 FSLWAMEEAKRRGVRVSLDVNYRQTLWS-PEEARGFLERALPGVDLLFLSEEEAELLFGRV------------------- 204 (309)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCCTTTSC-HHHHHHHHHHHGGGCSEEEEEHHHHHHHHSSH-------------------
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCcccCC-HHHHHHHHHHHHHhCCEEECcHHHHHHHhCCH-------------------
Confidence 8899999999999999999998877884 34456678889999999999999999998742
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCcEEEEEc-CCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHH
Q 008168 442 PEVIAPLWHENLKVLFVTNGTSKVHYYTK-EDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLV 520 (575)
Q Consensus 442 ~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~-~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~ 520 (575)
.+.++ ..|++.||||+|.+|+++ .. +...+++ .++++ ++|||||||+|+|||+++|++| +++.
T Consensus 205 ~~~~~---~~g~~~vvvt~G~~G~~~-~~~~~~~~~~---~~~v~--vvdttGAGDaf~a~~~~~l~~g-------~~~~ 268 (309)
T 1v1a_A 205 EEALR---ALSAPEVVLKRGAKGAWA-FVDGRRVEGS---AFAVE--AVDPVGAGDAFAAGYLAGAVWG-------LPVE 268 (309)
T ss_dssp HHHHH---HTCCSEEEEECGGGCEEE-EETTEEEECC---CCCCC--CSCCTTHHHHHHHHHHHHHHTT-------CCHH
T ss_pred HHHHH---hcCCCEEEEEecCCCeeE-ecCCcEEEeC---CCCCC--cCCCCCchHHHHHHHHHHHHcC-------CCHH
Confidence 02333 569999999999999998 65 3222333 34554 7999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCCCC
Q 008168 521 RTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEPDP 557 (575)
Q Consensus 521 eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~~~ 557 (575)
+|+++|+++|+++|++.|+..++|+++++++++.+..
T Consensus 269 ~a~~~a~~~aa~~v~~~G~~~~~~~~~~v~~~~~~~~ 305 (309)
T 1v1a_A 269 ERLRLANLLGASVAASRGDHEGAPYREDLEVLLKATQ 305 (309)
T ss_dssp HHHHHHHHHHHHHHTSSTTTTTCCCHHHHTTCC----
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCCCHHHHHHHHhhcC
Confidence 9999999999999999999888999999999986644
No 8
>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis}
Probab=100.00 E-value=1.5e-44 Score=378.71 Aligned_cols=316 Identities=17% Similarity=0.143 Sum_probs=258.6
Q ss_pred CCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008168 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l 283 (575)
|++|+|||++++|+++... ..+.....+...+||+++|+|++|++||.++.++|.||+|.+|+++
T Consensus 2 ~~~v~viG~~~~D~~~~~~---------------~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i 66 (346)
T 3ktn_A 2 SLKIAAFGEVMLRFTPPEY---------------LMLEQTEQLRMNFVGTGVNLLANLAHFQLETALITKLPANRLGEAG 66 (346)
T ss_dssp CCEEEEECCCEEEEECSTT---------------CCTTTCSCCEEEEECHHHHHHHHHHHTTCEEEEEEEECSSHHHHHH
T ss_pred CCcEEEeChhhhhhcCCCC---------------CcccccceeEEeccCHHHHHHHHHHHcCCCeEEEEecCCCHHHHHH
Confidence 5789999999999996321 1112357888999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEe---cCCccccCCccccc-hhhhccCcEEEEecccc-cccc
Q 008168 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCV---KPCAEDALTKSEIN-IDVLKEAKMFYFSTHSM-LERN 358 (575)
Q Consensus 284 ~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~---~~ga~~~lt~~~i~-~~~l~~ad~v~~sg~~l-~~~~ 358 (575)
++.|++.||+++++.+. +.+|+++++.++..++++++.+ ..++...+++++++ ...+..+++||++|+.+ .++.
T Consensus 67 ~~~l~~~gv~~~~v~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 145 (346)
T 3ktn_A 67 KAALRKLGISDQWVGEK-GDHIGSFFAEMGYGIRPTQVTYQNRHQSAFGISEAKDYDFEAFLAEVDMVHICGISLSLTEK 145 (346)
T ss_dssp HHHHHHTTCBCTTEEEC-CSCCEEEEEECCBTTBCCEEEECCCTTSTTTTCCGGGSCHHHHHTTCSEEEECTHHHHHCHH
T ss_pred HHHHHHcCCcceEEEeC-CCceEEEEEEecCCCCCceEEecCCCCChhhhCChhhcChHHHhCCCCEEEEeCccccCCHH
Confidence 99999999999999875 5789999988775555444322 24566778888887 45789999999998743 3445
Q ss_pred hHHHHHHHHHHHhhcCCEEEEcCCCCCccccCc--hhHHHHHHHhhccCeEeecCHHHHHHhhCCC-CCCcccccccccc
Q 008168 359 MKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSG--EETKMFIQQAWTLADVIEVTKQELEFLCGIK-PTEEFDTKNNARS 435 (575)
Q Consensus 359 ~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~--~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~-~~~~~d~~~~~~~ 435 (575)
..+.+.++++.++++|++|+|||+++..+|... ....+.+.++++++|||++|+.|+..|+|.. .....+.. .
T Consensus 146 ~~~~~~~~~~~a~~~g~~v~~D~~~r~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~~--~-- 221 (346)
T 3ktn_A 146 TRDAALILAQKAHAYQKKVCFDFNYRPSLNTANSALFMRQQYERILPYCDIVFGSRRDLVELLGFIPREDLEGEA--Q-- 221 (346)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCCGGGCCHHHHHHHHHHHHHHGGGCSEEECCHHHHHHTSCCCCCTTSCHHH--H--
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCCCChHHcCCccHHHHHHHHHHHHHhCCEEEccHHHHHHHhCCCCCccccchH--H--
Confidence 568889999999999999999999999998743 4556788899999999999999999999876 32110000 0
Q ss_pred cccCCcHHHHHHHhhc-CCCEEEEEcCCCc-------EEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHH
Q 008168 436 KFVHYEPEVIAPLWHE-NLKVLFVTNGTSK-------VHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLT 507 (575)
Q Consensus 436 ~~~~~~~e~~~~l~~~-g~k~VVVT~G~~G-------a~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~ 507 (575)
..++++.|... |++.||||+|.+| +++++.+...++++ ++++ ++|||||||+|+|||+++|+
T Consensus 222 -----~~~~~~~l~~~~g~~~vvvT~G~~G~~~~~~g~~~~~~~~~~~~~~---~~v~--vvdttGAGDaF~ag~~~~l~ 291 (346)
T 3ktn_A 222 -----ETELIQRFMSQYNLEWFAGTTRSHSQNQNYLSGYLYTQNEYQQSEK---RPLL--NLDRIGAGDAYAAGILYGYS 291 (346)
T ss_dssp -----HHHHHHHHHHHHTCSEEEEEEEEECSSCEEEEEEEECSSCEEECCC---EECC--CSCCTTHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhcCCCEEEEecCccccccCcceEEEEECCceEEeCC---Cccc--cCCCCchhHHHHHHHHHHHH
Confidence 23566777764 9999999999998 88887665444444 3444 79999999999999999999
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCCCC
Q 008168 508 VQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEPDP 557 (575)
Q Consensus 508 ~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~~~ 557 (575)
+| +++.+|+++|+++|+++|++.|+.. +|++++|+++|++..
T Consensus 292 ~g-------~~l~~a~~~A~a~aa~~v~~~G~~~-~p~~~ev~~~l~~~~ 333 (346)
T 3ktn_A 292 QN-------WSLEKAVTFATVNGVLAHTIQGDIP-LTTVKQVNHVLEHPN 333 (346)
T ss_dssp TT-------CCHHHHHHHHHHHHHHHTTSSSSCC-CCCHHHHHHHHHCTT
T ss_pred cC-------CCHHHHHHHHHHHHHHHhccCCCCC-CCCHHHHHHHHhcCC
Confidence 99 9999999999999999999999986 999999999997654
No 9
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A*
Probab=100.00 E-value=1.4e-44 Score=373.79 Aligned_cols=304 Identities=16% Similarity=0.209 Sum_probs=254.9
Q ss_pred CCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008168 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l 283 (575)
||+|+|||++++|+++... ..+.....+...+||+++|+|++|++||.++.++|.||+|.+|+++
T Consensus 1 m~~v~viG~~~~D~~~~~~---------------~~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D~~g~~~ 65 (313)
T 2v78_A 1 MVDVIALGEPLIQFNSFNP---------------GPLRFVNYFEKHVAGSELNFCIAVVRNHLSCSLIARVGNDEFGKNI 65 (313)
T ss_dssp -CCEEEECCCEEEEEESSS---------------SCGGGCCEEEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHHH
T ss_pred CCeEEEECcceEEEecCCC---------------CcccccceeEecCCChHHHHHHHHHHCCCcEEEEEEeCCCHHHHHH
Confidence 6799999999999996321 0112346788999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCceEEEEE--EcCCCCeEEEEe-cCCccccCCccccchhhhccCcEEEEecccc-cccch
Q 008168 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMK--IGKRGRLRMTCV-KPCAEDALTKSEINIDVLKEAKMFYFSTHSM-LERNM 359 (575)
Q Consensus 284 ~~~L~~~GIdt~~v~~~~~~~T~~~~i~--vd~~Ger~~~~~-~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l-~~~~~ 359 (575)
++.|++.||++.++.+.++.+|+++++. ++.+|++++.+. ..++...++++++....+.++++||++++.+ +.+.+
T Consensus 66 ~~~l~~~gv~~~~v~~~~~~~t~~~~~~~~~~~~g~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 145 (313)
T 2v78_A 66 IEYSRAQGIDTSHIKVDNESFTGIYFIQRGYPIPMKSELVYYRKGSAGSRLSPEDINENYVRNSRLVHSTGITLAISDNA 145 (313)
T ss_dssp HHHHHHTTCBCTTEEEETTSCCCEEEEEESSSSTTCEEEEEECTTCSGGGCCGGGCCHHHHHTSSEEEEEHHHHHHCHHH
T ss_pred HHHHHHcCCcCceEEEcCCCCceEEEEEEecCCCCCeeEEEeCCcChhHhCChhhCCHHHhcCCCEEEEcCchhhcChHH
Confidence 9999999999999988777899999998 877888876543 3467778888888777788999999998743 23445
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCe--EeecCHHHHHHhhCCCCCCcccccccccccc
Q 008168 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLAD--VIEVTKQELEFLCGIKPTEEFDTKNNARSKF 437 (575)
Q Consensus 360 ~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aD--Il~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~ 437 (575)
.+.+.++++.++++ +|||+.+..+|.+.+...+.+.++++++| +|++|++|+..|+|...
T Consensus 146 ~~~~~~~~~~a~~~----~~D~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~N~~E~~~l~g~~~-------------- 207 (313)
T 2v78_A 146 KEAVIKAFELAKSR----SLDTNIRPKLWSSLEKAKETILSILKKYDIEVLITDPDDTKILLDVTD-------------- 207 (313)
T ss_dssp HHHHHHHHHHCSSE----EEECCCCGGGSSCHHHHHHHHHHHHHHSCEEEEEECHHHHHHHHSCCC--------------
T ss_pred HHHHHHHHHHHHHh----CcCCcCChhhcCCHHHHHHHHHHHHHhcCeeEEECcHHHHHHHhCCCC--------------
Confidence 67778888887754 89999888888755556677888999999 99999999999998531
Q ss_pred cCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCch
Q 008168 438 VHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKG 517 (575)
Q Consensus 438 ~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~ 517 (575)
..+.++.|++.|++.||||+|++|++++..+...++++ ++++ ++|||||||+|+|||+++|++| +
T Consensus 208 ---~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvDttGAGDaF~ag~~~~l~~g-------~ 272 (313)
T 2v78_A 208 ---PDEAYRKYKELGVKVLLYKLGSKGAIAYKDNVKAFKDA---YKVP--VEDPTGAGDAMAGTFVSLYLQG-------K 272 (313)
T ss_dssp ---HHHHHHHHHHTTEEEEEEECGGGCEEEEETTEEEEECC---CCCC--CSCCTTHHHHHHHHHHHHHHTT-------C
T ss_pred ---HHHHHHHHHhCCCCEEEEEECCCCcEEeeCCcEEEeCC---CcCC--ccCCCCchHHHHHHHHHHHHcC-------C
Confidence 23567778888999999999999999997654444544 4554 7999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 518 YLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 518 sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
++++|+++|+++|+++|++.|+..++|+++++++++++
T Consensus 273 ~~~~a~~~a~~~aa~~v~~~G~~~~~~~~~~v~~~~~~ 310 (313)
T 2v78_A 273 DIEYSLAHGIAASTLVITVRGDNELTPTLEDAERFLNE 310 (313)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSSSTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Confidence 99999999999999999999999889999999999854
No 10
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}
Probab=100.00 E-value=5e-44 Score=372.36 Aligned_cols=313 Identities=19% Similarity=0.260 Sum_probs=255.9
Q ss_pred CCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008168 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l 283 (575)
+++|+|+|++++|++.... ..|. . ....+...+||+++|+|++|++||.++.++|.||+|.+|+++
T Consensus 11 ~~~i~viG~~~~D~~~~~~---~~~~-------~----~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~l 76 (332)
T 2qcv_A 11 EFDLIAIGRACIDLNAVEY---NRPM-------E----ETMTFSKYVGGSPANIVIGSSKLGLKAGFIGKIADDQHGRFI 76 (332)
T ss_dssp SEEEEEESCCEEEEEESSC---SSCG-------G----GCCCEEEEEESHHHHHHHHHHHTTCCEEEEEEECSSHHHHHH
T ss_pred CCcEEEECcceEEEecCCC---CCCc-------c----ccceeEecCCCHHHHHHHHHHHcCCceEEEEEeCCCHHHHHH
Confidence 4589999999999997642 2221 0 235788999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcC-CCCceEEEEEEcCCCCeEEEEec-CCccccCCccccchhhhccCcEEEEecccccccchHH
Q 008168 284 LYYMNVNNVQTRSVRIDA-KRPTAVSQMKIGKRGRLRMTCVK-PCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKS 361 (575)
Q Consensus 284 ~~~L~~~GIdt~~v~~~~-~~~T~~~~i~vd~~Ger~~~~~~-~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e 361 (575)
++.|++.||+++++.+.+ ..+|+++++.++.+|++++.+.. .++...++++++....++++++||++|+.+......+
T Consensus 77 ~~~L~~~gV~~~~v~~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 156 (332)
T 2qcv_A 77 ESYMRGVGVDTSNLVVDQEGHKTGLAFTEIKSPEECSILMYRQDVADLYLSPEEVNEAYIRRSKLLLVSGTALSKSPSRE 156 (332)
T ss_dssp HHHHHHTTCBCTTEEECSSCCCCCEEEEEEEETTEEEEEEECTTCGGGGCCGGGCCHHHHTTEEEEEEEGGGGSSTTHHH
T ss_pred HHHHHHcCCCCcceEecCCCCCceEEEEEEcCCCCccEEEECCcchhhhCCHhHCCHHHHccCCEEEEeCccccCchhHH
Confidence 999999999999998765 46899999887766777665433 3456678888887667889999999987544434567
Q ss_pred HHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCc
Q 008168 362 TTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYE 441 (575)
Q Consensus 362 ~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~ 441 (575)
.+.++++.++++|++|+|||+.+..+|.......+.+..+++++|+|++|++|+..|+|....+ + .
T Consensus 157 ~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~--~------------~ 222 (332)
T 2qcv_A 157 AVLKAIRLAKRNDVKVVFELDYRPYSWETPEETAVYYSLVAEQSDIVIGTREEFDVLENRTEKG--D------------N 222 (332)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCCGGGSSCHHHHHHHHHHHHHHCSEEEEEHHHHHHHTTCSSCC--C------------H
T ss_pred HHHHHHHHHHHCCCEEEEcCcCchhhcCCHHHHHHHHHHHHHhCCEEEccHHHHHHHhCCCcCC--C------------H
Confidence 8889999999999999999998877887655566778889999999999999999999864311 0 2
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCcEEEEEc-CCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHH
Q 008168 442 PEVIAPLWHENLKVLFVTNGTSKVHYYTK-EDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLV 520 (575)
Q Consensus 442 ~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~-~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~ 520 (575)
.+.++.+++.|++.||||+|++|++++++ +...++++ ++++ ++|||||||+|+|||+++|++| ++++
T Consensus 223 ~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~---~~v~--vvdt~GAGDaf~a~~~~~l~~g-------~~~~ 290 (332)
T 2qcv_A 223 DETIRYLFKHSPELIVIKHGVEGSFAYTKAGEAYRGYA---YKTK--VLKTFGAGDSYASAFLYALISG-------KGIE 290 (332)
T ss_dssp HHHHHHHTTSSCSEEEEECGGGCEEEEETTSCEEEECC---BCCC--CSCCTTHHHHHHHHHHHHHHTT-------CCHH
T ss_pred HHHHHHHHHcCCCEEEEEECCcceEEEecCCceEEcCC---CCcc--ccCCCCcHHHHHHHHHHHHHcC-------CCHH
Confidence 36677888889999999999999999987 43444544 3454 7999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCCC
Q 008168 521 RTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEPD 556 (575)
Q Consensus 521 eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~~ 556 (575)
+|+++|+++|+++|++.|+..++|+++++++++++.
T Consensus 291 ~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~~ 326 (332)
T 2qcv_A 291 TALKYGSASASIVVSKHSSSDAMPSVEEIEALIEKD 326 (332)
T ss_dssp HHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCCCccCCCCHHHHHHHHhcC
Confidence 999999999999999999988899999999998653
No 11
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A*
Probab=100.00 E-value=5.7e-44 Score=369.42 Aligned_cols=297 Identities=22% Similarity=0.318 Sum_probs=251.8
Q ss_pred CCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008168 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l 283 (575)
||+|+|||++++|+++... ..+.....+...+||+++|+|++|++||.++.++|.||+|.+|+++
T Consensus 1 M~~v~viG~~~iD~~~~~~---------------g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~g~~i 65 (313)
T 3ewm_A 1 MSLIASIGELLIDLISVEE---------------GDLKDVRLFEKHPGGAPANVAVGVSRLGVKSSLISKVGNDPFGEYL 65 (313)
T ss_dssp -CEEEEESCCEEEEEESSS---------------SCTTTCCEEEEEEECHHHHHHHHHHHTTCEEEEEEEEESSHHHHHH
T ss_pred CCcEEEECceeeeeecCCC---------------CCcccccceeecCCCHHHHHHHHHHHCCCCeEEEEEeCCCHHHHHH
Confidence 7899999999999997531 0112346788999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHH
Q 008168 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTT 363 (575)
Q Consensus 284 ~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e~~ 363 (575)
++.|++.||+++++.+.++.+|+++++.++. |++++.+....+...+++++++...+..++++|++++.+..+...+.+
T Consensus 66 ~~~l~~~gv~~~~v~~~~~~~T~~~~~~~~~-g~~~~~~~~~~a~~~l~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~ 144 (313)
T 3ewm_A 66 IEELSKENVDTRGIVKDEKKHTGIVFVQLKG-ASPSFLLYDDVAYFNMTLNDINWDIVEEAKIVNFGSVILARNPSRETV 144 (313)
T ss_dssp HHHHHHTTCBCTTEEEESSSCCEEEEEECSS-SSCEEEECCSSGGGCCCGGGCCHHHHHHCSEEEEESGGGGSTTHHHHH
T ss_pred HHHHHHcCCCccceeecCCCCceEEEEEecC-CCcceEeeccCHHHhCChhhCCHHHhCCCCEEEEcCcccCCcchHHHH
Confidence 9999999999999988888899999988765 888876554446677888888877888999999999765445567888
Q ss_pred HHHHHHHhhcCCEEEEcCCCCCcccc-CchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcH
Q 008168 364 LQAIKISKQFGGIIFYDVNLPLPLWQ-SGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEP 442 (575)
Q Consensus 364 ~~~l~~ak~~G~~Vv~D~~~~~~l~~-~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~ 442 (575)
.++++.++ .+++|+|||+.+..+|. ..+...+.+.++++++|++++|++|++.|++....
T Consensus 145 ~~~~~~a~-~~~~v~~Dp~~~~~~~~~~~~~~~~~~~~~l~~~di~~~N~~E~~~l~~~~~~------------------ 205 (313)
T 3ewm_A 145 MKVIKKIK-GSSLIAFDVNLRLDLWRGQEEEMIKVLEESIKLADIVKASEEEVLYLENQGVE------------------ 205 (313)
T ss_dssp HHHHHHHB-TTBEEEEECCCCGGGGTTCHHHHHHHHHHHHHHCSEEEEEHHHHHHHHTTTCC------------------
T ss_pred HHHHHHhc-cCCEEEEeCCCChHHcCCCHHHHHHHHHHHHhhCCEEecCHHHHHHHhccCcc------------------
Confidence 99999998 57999999998888887 34556678889999999999999999999875321
Q ss_pred HHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHH--cCCCCCCCchhHH
Q 008168 443 EVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLT--VQPHLITDKGYLV 520 (575)
Q Consensus 443 e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~--~g~~~~~d~~sl~ 520 (575)
..+...||||+|.+|++++++++..++++ ++++ ++|||||||+|+|||+++|+ +| ++++
T Consensus 206 -------~~~~~~vviT~G~~G~~~~~~~~~~~~~~---~~v~--vvDttGAGDaf~a~~~~~l~~~~g-------~~l~ 266 (313)
T 3ewm_A 206 -------VKGSMLTAITLGPKGCRLIKNETVVDVPS---YNVN--PLDTTGAGDAFMAALLVGILKLKG-------LDLL 266 (313)
T ss_dssp -------CCCSSEEEEECGGGEEEEEETTEEEEEEC---CCCC--CSCCTTHHHHHHHHHHHHHHHSSS-------CCHH
T ss_pred -------ccCceEEEEEECCCCeEEEECCeeEEcCC---CCcc--cCCCCCchHHHHHHHHHHHHhcCC-------CCHH
Confidence 12456799999999999998876555554 4454 89999999999999999999 88 9999
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 521 RTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 521 eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
+|+++|+++|+++|++.|+. ++|++++|+++++.
T Consensus 267 ~a~~~A~~~aa~~v~~~G~~-~~p~~~ev~~~l~~ 300 (313)
T 3ewm_A 267 KLGKFANLVAALSTQKRGAW-STPRKDELLKYKEA 300 (313)
T ss_dssp HHHHHHHHHHHHHTTSCSSC-CCCCHHHHTTSHHH
T ss_pred HHHHHHHHHHHHHHccCCCC-CCCCHHHHHHHHHH
Confidence 99999999999999999996 49999999999854
No 12
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A*
Probab=100.00 E-value=1.1e-44 Score=379.57 Aligned_cols=309 Identities=23% Similarity=0.389 Sum_probs=248.0
Q ss_pred CCCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008168 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 202 ~~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~ 281 (575)
+.|++|+|||++++|++... ...+...+||+++|+|++|++||.++.++|.||+|.+|+
T Consensus 22 ~~m~~ilviG~~~~D~~~~~---------------------~~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~G~ 80 (339)
T 1tyy_A 22 KAMNKVWVIGDASVDLVPEK---------------------QNSYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGR 80 (339)
T ss_dssp ---CCEEEESCCEEEEEECS---------------------SSEEEEEEECHHHHHHHHHHHTTCCEEEEEEECSSHHHH
T ss_pred cccCCEEEECcceeEEeccC---------------------CCceEEcCCCHHHHHHHHHHHcCCCeEEEEeeCCCHHHH
Confidence 34558999999999999652 145678999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEe-cCCccccCCccccchhhhccCcEEEEecccccccchH
Q 008168 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCV-KPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMK 360 (575)
Q Consensus 282 ~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~-~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~ 360 (575)
++++.|++.||++.++.+.++.+|+++++.++.+|++++.+. ..++...++++. ...+..+++||++++.+..+...
T Consensus 81 ~i~~~L~~~gVd~~~v~~~~~~~T~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~--~~~l~~~~~v~~~~~~l~~~~~~ 158 (339)
T 1tyy_A 81 FLRQVFQDNGVDVTFLRLDADLTSAVLIVNLTADGERSFTYLVHPGADTYVSPQD--LPPFRQYEWFYFSSIGLTDRPAR 158 (339)
T ss_dssp HHHHHHHTTTEECTTEEECTTSCCCEEEEC-------CEEECCSSCGGGGCCGGG--CCCCCTTCEEEEEHHHHSSHHHH
T ss_pred HHHHHHHHcCCCchheEecCCCCCeEEEEEEcCCCCeEEEEecCCChhhhCCcch--hhHhccCCEEEEcchhhcCcccH
Confidence 999999999999999988888899999998887888876543 335655665542 34577899999998755555567
Q ss_pred HHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCC
Q 008168 361 STTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHY 440 (575)
Q Consensus 361 e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~ 440 (575)
+.+.++++.+++.|++|+|||+.+..+|...+...+.+.++++++|+|++|++|+..|+|....
T Consensus 159 ~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~Ea~~l~g~~~~---------------- 222 (339)
T 1tyy_A 159 EACLEGARRMREAGGYVLFDVNLRSKMWGNTDEIPELIARSAALASICKVSADELCQLSGASHW---------------- 222 (339)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCGGGCSCGGGHHHHHHHHHHHCSEEEEEHHHHHHHHCCSSG----------------
T ss_pred HHHHHHHHHHHHcCCEEEEeCCCCccccCCHHHHHHHHHHHHhhCCEEecCHHHHHHHhCCCCH----------------
Confidence 8889999999999999999999888888755566777888999999999999999999986421
Q ss_pred cHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHH
Q 008168 441 EPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLV 520 (575)
Q Consensus 441 ~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~ 520 (575)
.++++.|.+.|++.||||+|++|+++++++...++++ ++++ ++|||||||+|+|||+++|++|+ . .+..+++
T Consensus 223 -~~~~~~l~~~g~~~VvvT~G~~G~~~~~~~~~~~~~~---~~v~--vvDttGAGDaF~ag~~~~l~~g~-~-~~~~~l~ 294 (339)
T 1tyy_A 223 -QDARYYLRDLGCDTTIISLGADGALLITAEGEFHFPA---PRVD--VVDTTGAGDAFVGGLLFTLSRAN-C-WDHALLA 294 (339)
T ss_dssp -GGGSSTTGGGTCSCEEEECGGGCEEEESSSCEEEECC---CCCC--CSCCTTHHHHHHHHHHHHHTTSS-S-CCHHHHH
T ss_pred -HHHHHHHHHcCCCEEEEEECCCceEEEeCCceEEcCC---CCCC--cCCCCCchHHHHHHHHHHHHhcc-c-cccccHH
Confidence 1334456677999999999999999998765455554 3454 89999999999999999999841 0 1127999
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCCCC
Q 008168 521 RTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEPDP 557 (575)
Q Consensus 521 eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~~~ 557 (575)
+|+++|+++|+++|++.|+..++|++++|++++++..
T Consensus 295 ~a~~~A~a~aa~~v~~~G~~~~~p~~~ev~~~l~~~~ 331 (339)
T 1tyy_A 295 EAISNANACGAMAVTAKGAMTALPFPDQLNTFLSSHS 331 (339)
T ss_dssp HHHHHHHHHHHHGGGSSSTTTTCCCHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHhcCc
Confidence 9999999999999999999888999999999997654
No 13
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*
Probab=100.00 E-value=7.2e-44 Score=367.83 Aligned_cols=302 Identities=16% Similarity=0.248 Sum_probs=253.3
Q ss_pred CCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008168 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l 283 (575)
|++|+|||++++|+++... . ....+..+...+||+++|+|++|++||.++.++|.||+|.+|+++
T Consensus 1 m~~v~viG~~~~D~~~~~~--~-------------~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~D~~g~~i 65 (311)
T 2dcn_A 1 MAKLITLGEILIEFNALSP--G-------------PLRHVSYFEKHVAGSEANYCVAFIKQGNECGIIAKVGDDEFGYNA 65 (311)
T ss_dssp -CEEEEESCCEEEEEESSS--S-------------CGGGCCEEEEEEECHHHHHHHHHHHTTCEEEEECEEESSHHHHHH
T ss_pred CCCEEEECCceEEEecCCC--C-------------cccccceeeecCCChHHHHHHHHHHCCCceEEEEEeCCCHHHHHH
Confidence 5789999999999997321 0 112346788899999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCceEEEEEEcCCCC--eEEEEe-cCCccccCCccccchhhhccCcEEEEecccc-cccch
Q 008168 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGR--LRMTCV-KPCAEDALTKSEINIDVLKEAKMFYFSTHSM-LERNM 359 (575)
Q Consensus 284 ~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ge--r~~~~~-~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l-~~~~~ 359 (575)
++.|++.||++.++.+.++.+|+++++.++.+|+ +++.+. ..++...++++++....+.++++||++++.+ +.+.+
T Consensus 66 ~~~l~~~gv~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 145 (311)
T 2dcn_A 66 IEWLRGQGVDVSHMKIDPSAPTGIFFIQRHYPVPLKSESIYYRKGSAGSKLSPEDVDEEYVKSADLVHSSGITLAISSTA 145 (311)
T ss_dssp HHHHHHTTCBCTTCEEETTSCCCEEEEEESCSSTTCEEEEEECTTCTGGGCCGGGCCHHHHTTCSEEEEEHHHHHSCHHH
T ss_pred HHHHHHcCCCcceEEEcCCCCceEEEEEECCCCCccceEEEecCcChhhhCChhhcChHHHcCCCEEEEeCcccccChHH
Confidence 9999999999999988777899999999988887 776543 3567778888888777788999999998744 23456
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhc--cCeEeecCHHHHHHhhCCCCCCcccccccccccc
Q 008168 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT--LADVIEVTKQELEFLCGIKPTEEFDTKNNARSKF 437 (575)
Q Consensus 360 ~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~--~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~ 437 (575)
.+.+.++++.+++. +|||+.+..+|. .+...+.+.++++ ++|+|++|++|+..|+|...
T Consensus 146 ~~~~~~~~~~a~~~----~~D~~~~~~~~~-~~~~~~~~~~~l~~~~~dil~~N~~E~~~l~g~~~-------------- 206 (311)
T 2dcn_A 146 KEAVYKAFEIASNR----SFDTNIRLKLWS-AEEAKREILKLLSKFHLKFLITDTDDSKIILGESD-------------- 206 (311)
T ss_dssp HHHHHHHHHHCSSE----EEECCCCTTTSC-HHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHSCCC--------------
T ss_pred HHHHHHHHHHHHHh----CcCccCchhhCC-hHHHHHHHHHHHhhcCCcEEECCHHHHHHHhCCCC--------------
Confidence 67788888887755 899998888886 3445567788999 99999999999999998531
Q ss_pred cCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCch
Q 008168 438 VHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKG 517 (575)
Q Consensus 438 ~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~ 517 (575)
..++++.|++. ++.||||+|.+|+++++++...++++ ++++ ++|||||||+|+|||+++|++| +
T Consensus 207 ---~~~~~~~l~~~-~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvdttGAGDaf~a~~~~~l~~g-------~ 270 (311)
T 2dcn_A 207 ---PDKAAKAFSDY-AEIIVMKLGPKGAIVYYDGKKYYSSG---YQVP--VEDVTGAGDALGGTFLSLYYKG-------F 270 (311)
T ss_dssp ---HHHHHHHHTTT-EEEEEEEEETTEEEEEETTEEEEEEC---CCCC--CSCCTTHHHHHHHHHHHHHTTT-------C
T ss_pred ---HHHHHHHHHHh-CCEEEEEECCCCcEEEeCCcEEEeCC---cccc--ccCCCCchHHHHHHHHHHHHcC-------C
Confidence 23566778777 89999999999999998765445554 4554 7999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 518 YLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 518 sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
++++|+++|+++|+++|++.|+..++|+++++++++.+
T Consensus 271 ~~~~a~~~a~~~aa~~v~~~G~~~~~~~~~~v~~~~~~ 308 (311)
T 2dcn_A 271 EMEKALDYAIVASTLNVMIRGDQENLPTTKDIETFLRE 308 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTSSSSSTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHh
Confidence 99999999999999999999999889999999998753
No 14
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus}
Probab=100.00 E-value=1.1e-43 Score=364.98 Aligned_cols=301 Identities=19% Similarity=0.225 Sum_probs=252.1
Q ss_pred CCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008168 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l 283 (575)
|++|+|+|++++|++... +++|.+ .+.......+...+||+++|+|++|++||.++.++|.||+|.+|+++
T Consensus 2 m~~v~viG~~~~D~~~~~---~~~p~~------g~~~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~~~~vG~D~~g~~i 72 (304)
T 3ry7_A 2 TNKVVILGSTNVDQFLTV---ERYAQP------GETLHVEEAQKAFGGGKGANQAIATARMQADTTFITKIGTDGVADFI 72 (304)
T ss_dssp CCEEEEECCCEEEEEEEC---SSCCCT------TCCCCCSSCCEEEEECHHHHHHHHHHHTTCEEEEECEEESSCTTHHH
T ss_pred CCcEEEEccceeEEEEec---cCCCCC------CCceecccceeecCCCHHHHHHHHHHHCCCCeEEEEEeCCChHHHHH
Confidence 678999999999999875 455531 11111346788999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccc--hhhhccCcEEEEecccccccchHH
Q 008168 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN--IDVLKEAKMFYFSTHSMLERNMKS 361 (575)
Q Consensus 284 ~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~--~~~l~~ad~v~~sg~~l~~~~~~e 361 (575)
++.|++.||+++++.+.++.+|+++++.++.+|++++. .++++...+++++++ ...++.+++||+++. .+.+
T Consensus 73 ~~~l~~~gv~~~~v~~~~~~~T~~~~~~~~~~g~~~~~-~~~ga~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~ 146 (304)
T 3ry7_A 73 LEDFKVAHIDTSYIIKTAEAKTGQAFITVNAEGQNTIY-VYGGANMTMTPEDVINAKDAIINADFVVAQLE-----VPIP 146 (304)
T ss_dssp HHHHHHTTCBCTTCEEESSSCCEEEEEEECSSCCEEEE-EECGGGGGCCHHHHHTTHHHHHTCSEEEEETT-----SCHH
T ss_pred HHHHHHcCCcchhEEEcCCCCCcEEEEEECCCCCEEEE-EecCchhcCCHHHHHHHHHHhccCCEEEEcCC-----CCHH
Confidence 99999999999999888888999999999988998775 557787888887775 246889999999852 3567
Q ss_pred HHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCc
Q 008168 362 TTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYE 441 (575)
Q Consensus 362 ~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~ 441 (575)
.+.++++.++++|++|+|||+.... .+..+++++|+|++|.+|+..|+|....+..+ .
T Consensus 147 ~~~~~~~~a~~~~~~v~~D~~~~~~----------~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~------------~ 204 (304)
T 3ry7_A 147 AIISAFEIAKAHGVTTVLNPAPAKA----------LPNELLSLIDIIVPNETEAELLSGIKVTNEQS------------M 204 (304)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSCCC----------CCHHHHTTCSEECCBHHHHHHHHSCCCCSHHH------------H
T ss_pred HHHHHHHHHHHcCCEEEEeCCcccc----------ccHHHHHhCCEEecCHHHHHHHhCCCCCChhH------------H
Confidence 8889999999999999999875322 24567899999999999999999976432211 2
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHH
Q 008168 442 PEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVR 521 (575)
Q Consensus 442 ~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~e 521 (575)
.+.++.|++.|++.||||+|.+|+++++++...++++ ++++ ++|||||||+|+|||+++|++|+ +++++
T Consensus 205 ~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--~vdttGAGDaf~a~~~~~l~~g~------~~~~~ 273 (304)
T 3ry7_A 205 KDNANYFLSIGIKTVLITLGKQGTYFATKNQSQHIEA---YKVN--AIDTTAAGDTFIGAFVSRLNKSQ------DNLAD 273 (304)
T ss_dssp HHHHHHHHHTTCCEEEEECGGGCEEEECSSCEEEECC---SSCC--SSCCSSHHHHHHHHHHHHCCTTC------TTHHH
T ss_pred HHHHHHHHHcCCCEEEEEeCCCceEEEECCeeEEecC---CCcc--cCCCCCchHHHHHHHHHHHHcCC------CCHHH
Confidence 3567788888999999999999999998776555554 3454 79999999999999999999862 58999
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCHHHHHHh
Q 008168 522 TIKYAIDCGVRDQWSQARTLGYPPKEGMEEE 552 (575)
Q Consensus 522 Al~~A~aaAA~~v~~~G~~~g~pt~eeve~~ 552 (575)
|+++|+++|+++|++.|+..++|++++|+++
T Consensus 274 a~~~A~~~aa~~~~~~G~~~~~p~~~ev~~~ 304 (304)
T 3ry7_A 274 AIDFGNKASSLTVQKHGAQASIPLLEEVNQV 304 (304)
T ss_dssp HHHHHHHHHHTTSCCCCTGGGCCCHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCCccccCCCHHHHhhC
Confidence 9999999999999999999899999999864
No 15
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*
Probab=100.00 E-value=2.5e-43 Score=363.46 Aligned_cols=303 Identities=17% Similarity=0.240 Sum_probs=251.4
Q ss_pred CCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008168 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 203 ~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~ 282 (575)
+|++|+|+|++++|++... +++|.+ .+ ......+...+||+++|+|++|++||.++.++|.||+|.+|++
T Consensus 3 ~~~~v~viG~~~iD~~~~~---~~~p~~------g~-~~~~~~~~~~~GG~~~N~A~~la~lG~~~~~~~~vG~D~~g~~ 72 (309)
T 1rkd_A 3 NAGSLVVLGSINADHILNL---QSFPTP------GE-TVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGES 72 (309)
T ss_dssp -CCEEEEECCCEEEEEEEC---SSCCCT------TC-CCCCCCEEEEEECHHHHHHHHHHHHTCEEEEEEEEESSTTHHH
T ss_pred CCCeEEEECcceEeEEEec---CCCCCC------CC-eeecCceeecCCCHHHHHHHHHHhCCCceEEEEEECCCHHHHH
Confidence 4678999999999999875 355532 11 2234678899999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccch--hhhccCcEEEEecccccccchH
Q 008168 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI--DVLKEAKMFYFSTHSMLERNMK 360 (575)
Q Consensus 283 l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~--~~l~~ad~v~~sg~~l~~~~~~ 360 (575)
+++.|++.||++.++.+.++.+|++++++++.+|++++. ...++...++++++.. ..+..+++||+++. .+.
T Consensus 73 i~~~L~~~gv~~~~v~~~~~~~T~~~~~~~~~~g~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~-----~~~ 146 (309)
T 1rkd_A 73 VRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIG-IHAGANAALSPALVEAQRERIANASALLMQLE-----SPL 146 (309)
T ss_dssp HHHHHHTTTEECTTEEEETTCCCEEEEEEECTTSCEEEE-EECGGGGGCCHHHHHTTHHHHHHCSEEEECSS-----SCH
T ss_pred HHHHHHHcCCCccceEecCCCCCceEEEEECCCCCeEEE-EeCCchhcCCHHHHHHHHHhcccCCEEEEeCC-----CCH
Confidence 999999999999999887788999999999888998875 4567777788777652 46788999999753 245
Q ss_pred HHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCC
Q 008168 361 STTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHY 440 (575)
Q Consensus 361 e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~ 440 (575)
+.+..+++.++++|++|+|||+.... | ...+++++|+|++|..|+..|+|....+..+
T Consensus 147 ~~~~~~~~~a~~~g~~v~~D~~~~~~-~---------~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~------------ 204 (309)
T 1rkd_A 147 ESVMAAAKIAHQNKTIVALNPAPARE-L---------PDELLALVDIITPNETEAEKLTGIRVENDED------------ 204 (309)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCSCCC-C---------CHHHHTTCSEECCCHHHHHHHHSCCCSSHHH------------
T ss_pred HHHHHHHHHHHHcCCEEEEECCcccc-c---------hHHHHhhCCEEEcCHHHHHHHhCCCCCCHHH------------
Confidence 67888899999999999999986532 2 2357789999999999999999875432111
Q ss_pred cHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHH
Q 008168 441 EPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLV 520 (575)
Q Consensus 441 ~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~ 520 (575)
..+.++.|++.|++.||||+|.+|+++++.+...++++ ++++ ++|||||||+|+|||+++|++| +++.
T Consensus 205 ~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--~vdt~GAGD~f~a~~~~~l~~g-------~~~~ 272 (309)
T 1rkd_A 205 AAKAAQVLHEKGIRTVLITLGSRGVWASVNGEGQRVPG---FRVQ--AVDTIAAGDTFNGALITALLEE-------KPLP 272 (309)
T ss_dssp HHHHHHHHHHTTCSEEEEECGGGCEEEEETTEEEEECC---CCCC--CSCCTTHHHHHHHHHHHHHHTT-------CCHH
T ss_pred HHHHHHHHHHhCCCEEEEEECCCcEEEEeCCceEEcCC---CCCC--cCCCCChHHHHHHHHHHHHHcC-------CCHH
Confidence 23567778888999999999999999988765444444 4454 7999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 521 RTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 521 eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
+|+++|+++|+++|++.|+..++|++++|++++++
T Consensus 273 ~a~~~a~~~aa~~~~~~G~~~~~p~~~ev~~~~~~ 307 (309)
T 1rkd_A 273 EAIRFAHAAAAIAVTRKGAQPSVPWREEIDAFLDR 307 (309)
T ss_dssp HHHHHHHHHHHHHHTSSSSGGGCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCccCCCCCHHHHHHHHhc
Confidence 99999999999999999998889999999999853
No 16
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A*
Probab=100.00 E-value=4e-43 Score=366.12 Aligned_cols=296 Identities=19% Similarity=0.251 Sum_probs=250.0
Q ss_pred cccccCCCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHc--CCCeEEEEEe
Q 008168 197 ISFTYGWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARL--GGKVAFMGKL 274 (575)
Q Consensus 197 i~~~~~~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarL--G~~v~lig~V 274 (575)
--|.+..|++|+|||++++|++.... ...+...+||+++|+|++|++| |.++.++|.|
T Consensus 16 ~~y~~~~m~~i~viG~~~iD~~~~~~--------------------~~~~~~~~GG~~~NvA~~la~Lg~G~~~~~ig~v 75 (328)
T 4e69_A 16 ENLYFQSMMHILSIGECMAELAPADL--------------------PGTYRLGFAGDTFNTAWYLARLRPESRISYFSAI 75 (328)
T ss_dssp BCSSCBSSCEEEEESCCEEEEEECSS--------------------TTEEEEEEECHHHHHHHHHHHHCTTSEEEEECEE
T ss_pred cccccccCCcEEEecCcEEEEecCCC--------------------CCceEEecCCHHHHHHHHHHhcCCCCcEEEEEee
Confidence 33888999999999999999997520 1467789999999999999999 8999999999
Q ss_pred CCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCC-cc-ccCCccccchhhhccCcEEEEecc
Q 008168 275 GDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPC-AE-DALTKSEINIDVLKEAKMFYFSTH 352 (575)
Q Consensus 275 G~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~g-a~-~~lt~~~i~~~~l~~ad~v~~sg~ 352 (575)
|+|.+|+++++.|++.||+++++.+.++.+|+++++.++ +|++++.+.... +. ..++..++....+..+++||++|+
T Consensus 76 G~D~~G~~l~~~L~~~GV~~~~v~~~~~~~T~~~~v~~~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~ 154 (328)
T 4e69_A 76 GDDALSQQMRAAMSAAGIDGGGLRVIPGRTVGLYLITLE-QGERSFAYWRGQSAARELAGDADALAAAMARADVVYFSGI 154 (328)
T ss_dssp CSSHHHHHHHHHHHHTTEECTTCEECTTCCCEEEEEEEE-TTEEEEEEECTTCGGGGTTSCHHHHHHHHTTCSEEEEEHH
T ss_pred CCCHHHHHHHHHHHHcCCccceEEEcCCCCCeEEEEEec-CCceEEEEeCCCCHHHhhcCccccchHHhcCCCEEEECCc
Confidence 999999999999999999999998888889999999998 899887643322 22 223444444467889999999986
Q ss_pred cc--cccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCccccc
Q 008168 353 SM--LERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTK 430 (575)
Q Consensus 353 ~l--~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~ 430 (575)
.+ +++...+.+.++++.+++.|++|+|||++++.+|.+.....+.+.++++++|+|++|..|+..|+|...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~------- 227 (328)
T 4e69_A 155 TLAILDQCGRATLLRALAQARATGRTIAFDPNLRPRLWAGTGEMTETIMQGAAVSDIALPSFEDEAAWFGDAG------- 227 (328)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHTTCEEEEECCCCGGGCSCHHHHHHHHHHHHTTCSEECCBHHHHHHHHTCSS-------
T ss_pred hhhccCchHHHHHHHHHHHHHhCCCEEEEeCCCChhhcCCHHHHHHHHHHHHHhCCEEeCCHHHHHHHcCCCC-------
Confidence 32 345567888999999999999999999988889976667778888999999999999999999998641
Q ss_pred ccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCC
Q 008168 431 NNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQP 510 (575)
Q Consensus 431 ~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~ 510 (575)
..++++.|.+.|++.||||+|.+|+++++++...++++++ .++ ++|||||||+|+|||+++|++|
T Consensus 228 ----------~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~--~~~--vvdttGAGDaf~a~~~~~l~~g- 292 (328)
T 4e69_A 228 ----------PDATADRYARAGVRSVVVKNGPHAVHFLQDGRRGRVPVPP--VAQ--VVDTTAAGDSFNAGLLDSVLAG- 292 (328)
T ss_dssp ----------HHHHHHHHHTTTCSEEEEBCTTSCEEEEETTEEEEECCCC--CCS--CCCCTTHHHHHHHHHHHHHHTT-
T ss_pred ----------HHHHHHHHHhcCCCEEEEEeCCCCeEEEeCCceEEecCCC--CCC--ccCCCChhHHHHHHHHHHHHCC-
Confidence 2366777888899999999999999999887555555421 133 7999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhcccccCC
Q 008168 511 HLITDKGYLVRTIKYAIDCGVRDQWSQARTL 541 (575)
Q Consensus 511 ~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~ 541 (575)
+++++|+++|+++|+++|++.|+..
T Consensus 293 ------~~l~~a~~~A~~~aa~~v~~~Ga~~ 317 (328)
T 4e69_A 293 ------QPLETAIAAAAALAGQVVQGKGALV 317 (328)
T ss_dssp ------CCHHHHHHHHHHHHHHHHTSSSSSC
T ss_pred ------CCHHHHHHHHHHHHHHHHccCCCcC
Confidence 9999999999999999999999963
No 17
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri}
Probab=100.00 E-value=1.5e-43 Score=367.15 Aligned_cols=288 Identities=21% Similarity=0.231 Sum_probs=240.5
Q ss_pred CcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcC----CCeEEEEEeCCChHH
Q 008168 205 PLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLG----GKVAFMGKLGDDEYG 280 (575)
Q Consensus 205 ~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG----~~v~lig~VG~D~~G 280 (575)
++|+|||++++|++..+ ..+...+||+++|+|++|++|| .+|.++|.||+|.+|
T Consensus 5 ~~i~viG~~~~D~~~~~----------------------~~~~~~~GG~~~NvA~~la~LG~~~~~~~~~ig~vG~D~~G 62 (319)
T 3lhx_A 5 KKIAVIGECMIELSEKG----------------------ADVKRGFGGDTLNTSVYIARQVDPAALTVHYVTALGTDSFS 62 (319)
T ss_dssp EEEEEESCCEEEEEC-------------------------CCEEEEECHHHHHHHHHHTTSCTTTEEEEEECEECSSHHH
T ss_pred CceeeechhhhhhccCC----------------------CceEEecCChHHHHHHHHHHcCCCCCCcEEEEEEeCCCHHH
Confidence 57999999999998643 3467889999999999999999 899999999999999
Q ss_pred HHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCC--ccccCCccccc--hhhhccCcEEEEecccc--
Q 008168 281 QAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPC--AEDALTKSEIN--IDVLKEAKMFYFSTHSM-- 354 (575)
Q Consensus 281 ~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~g--a~~~lt~~~i~--~~~l~~ad~v~~sg~~l-- 354 (575)
+++++.|++.||+++++.+.++.+|+++++.++.+|++++.+.... +...+++.+++ ...+..+++||++|+.+
T Consensus 63 ~~l~~~L~~~GV~~~~v~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~~ 142 (319)
T 3lhx_A 63 QQMLDAWHGENVDTSLTQRMENRLPGLYYIETDSTGERTFYYWRNEAAAKFWLASEQSAAICEELANFDYLYLSGISLAI 142 (319)
T ss_dssp HHHHHHHHTTTEECTTCEECTTCCCCEEEEEC----CCEEEEECTTCGGGGTTSSSSHHHHHHHHTTCSEEEEEHHHHHT
T ss_pred HHHHHHHHHcCCCcceEEEcCCCCceEEEEEeCCCCCeeEEEecCCCHHHhccCccchhhHHHHhcCCCEEEEcCchhhh
Confidence 9999999999999999988888899999999988899987644332 23345555543 35688999999998643
Q ss_pred cccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCccccccccc
Q 008168 355 LERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNAR 434 (575)
Q Consensus 355 ~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~ 434 (575)
+++...+.+.++++.++++|++|+|||+++..+|...+...+.+..+++++|++++|..|+..|+|...
T Consensus 143 l~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~di~~~n~~E~~~l~g~~~----------- 211 (319)
T 3lhx_A 143 LSPTSREKLLSLLRECRAKGGKVIFDNNYRPRLWASKEETQQVYQQMLECTDIAFLTLDDEDALWGQQP----------- 211 (319)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCEEEEECCCCGGGSSCHHHHHHHHHHHHTTCSEEEEEHHHHHHHHCCCC-----------
T ss_pred cCchhHHHHHHHHHHHHhcCCEEEEeCcCCcccccCHHHHHHHHHHHHhhCCcccCCHHHHHHHhCCCC-----------
Confidence 345567888999999999999999999988888977677778888999999999999999999998631
Q ss_pred ccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCce-eEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCC
Q 008168 435 SKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDG-AVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLI 513 (575)
Q Consensus 435 ~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~-~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~ 513 (575)
..++++.|.+.|++.||||+|.+|++++++++.. ++++++.++++ ++|||||||+|+|||+++|++|
T Consensus 212 ------~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~--vvdttGAGDaf~a~~~~~l~~g---- 279 (319)
T 3lhx_A 212 ------VEDVIARTHNAGVKEVVVKRGADSCLVSIAGEALVDVPAVKLPKEK--VIDTTAAGDSFSAGYLAVRLTG---- 279 (319)
T ss_dssp ------HHHHHHHHHHTTCSEEEEEETTEEEEEEETTSCCEEECCCCCCGGG--CCCCTTHHHHHHHHHHHHHTTT----
T ss_pred ------HHHHHHHHHhcCCCEEEEEECCCCeEEEECCcceEEcccccCCCCc--cCCCCCccHHHHHHHHHHHHcC----
Confidence 2366788888899999999999999999987655 66654222333 7999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHhcccccC
Q 008168 514 TDKGYLVRTIKYAIDCGVRDQWSQART 540 (575)
Q Consensus 514 ~d~~sl~eAl~~A~aaAA~~v~~~G~~ 540 (575)
+++++|+++|+++|+++|++.|+.
T Consensus 280 ---~~~~~a~~~A~~~aa~~v~~~Ga~ 303 (319)
T 3lhx_A 280 ---GSAENAAKRGHLTASTVIQYRGAI 303 (319)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTSSSSS
T ss_pred ---CCHHHHHHHHHHHHHhhhccCCCc
Confidence 999999999999999999999995
No 18
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens}
Probab=100.00 E-value=1.2e-43 Score=369.65 Aligned_cols=309 Identities=15% Similarity=0.155 Sum_probs=254.9
Q ss_pred cCCCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHH
Q 008168 201 YGWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYG 280 (575)
Q Consensus 201 ~~~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G 280 (575)
...+++|+|||++++|++.... .+|.+ .+.. ...+...+||+++|+|++|++||.++.++|.||+|.+|
T Consensus 3 ~~~~~~v~viG~~~vD~~~~~~---~~~~~------g~~~--~~~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~D~~g 71 (328)
T 3kzh_A 3 LRKEPYLLVFGASVVDVFGFSK---ASYRP------YNST--PGHVKISFGGVCRNIAENMARVGVNTNFMSILGNDEHG 71 (328)
T ss_dssp -CCCCCEEEECCCEEEEEEEES---SCCCT------TSEE--EEEEEEEEECHHHHHHHHHHHTTCCEEEECEECSSHHH
T ss_pred CCCCCcEEEECcEEeeeeeccC---CCCCC------CCCc--eEEEEEccCcHHHHHHHHHHHcCCCcEEEEEecCcHHH
Confidence 3567899999999999998762 33321 1111 12678899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccc--hhhhccCcEEEEecccccccc
Q 008168 281 QAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN--IDVLKEAKMFYFSTHSMLERN 358 (575)
Q Consensus 281 ~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~--~~~l~~ad~v~~sg~~l~~~~ 358 (575)
+++++.|++.||+++++.+.++.+|++++++++++|++.+.+..+++...++++.+. ...+..++++++++. .
T Consensus 72 ~~i~~~L~~~gv~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 146 (328)
T 3kzh_A 72 KSIVEHSKKIGYHMDDSMVIEGGSTPTYLAILDENGEMVSAIADMKSIGAMNTDFIDSKREIFENAEYTVLDSD-----N 146 (328)
T ss_dssp HHHHHHHHHHTEECTTCEECTTCCCCEEEEEECTTSCEEEEEEECGGGGGCCHHHHHHTHHHHHTCSEEEEESS-----C
T ss_pred HHHHHHHHHcCCCccceEEeCCCCCeeEEEEEcCCCCEEEEEEchhhhhhCCHHHHHHHHHhhccCCEEEEeCC-----c
Confidence 999999999999999988888889999999999999988766666777777777664 356889999999863 1
Q ss_pred hHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCccccccccccccc
Q 008168 359 MKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFV 438 (575)
Q Consensus 359 ~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~ 438 (575)
+ +.+..+++ +++.|++|+|||+... ..+.+.++++++|+|++|.+|+..|+|....+..+
T Consensus 147 ~-~~~~~l~~-a~~~~~~v~~D~~~~~--------~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~~---------- 206 (328)
T 3kzh_A 147 P-EIMEYLLK-NFKDKTNFILDPVSAE--------KASWVKHLIKDFHTIKPNRHEAEILAGFPITDTDD---------- 206 (328)
T ss_dssp H-HHHHHHHH-HHTTTSEEEEECCSHH--------HHHTSTTTGGGCSEECCBHHHHHHHHTSCCCSHHH----------
T ss_pred H-HHHHHHHH-HhhcCCcEEEEeCCHH--------HHHHHHHHhcCCcEEeCCHHHHHHHHCCCCCCHHH----------
Confidence 2 56666666 7889999999986321 13345678899999999999999999976533211
Q ss_pred CCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchh
Q 008168 439 HYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGY 518 (575)
Q Consensus 439 ~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~s 518 (575)
..++++.|++.|++.||||+|.+|+++++++...++++ ++++ ++|||||||+|+|||+++|++| ++
T Consensus 207 --~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvdttGAGDaf~ag~~~~l~~g-------~~ 272 (328)
T 3kzh_A 207 --LIKASNYFLGLGIKKVFISLDADGIFYNDGVSCGKIKA---TEVD--VKNVTGAGDSFVAGLGYGYMNK-------MP 272 (328)
T ss_dssp --HHHHHHHHHHHTCCEEEEECGGGCEEEECSSCEEEEEE---SSCC--CSCCTTHHHHHHHHHHHHHHTT-------CC
T ss_pred --HHHHHHHHHHhCCCEEEEEeCCCCEEEEeCCceEEecC---CCcc--cCCCCChhHHHHHHHHHHHHcC-------CC
Confidence 23566778888999999999999999998876666665 3454 8999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCCCCCC
Q 008168 519 LVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEPDPYG 559 (575)
Q Consensus 519 l~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~~~~~ 559 (575)
+.+|+++|+++|+++|++.|+..+.|+++++++++++....
T Consensus 273 ~~~a~~~A~a~aa~~v~~~G~~~~~~~~~~v~~~~~~~~~~ 313 (328)
T 3kzh_A 273 IEDIVKFAMTMSNITISHEETIHPDMALDTVLAKLEKTTWE 313 (328)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCTTCSHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcCCHHHHHHHhhhcchh
Confidence 99999999999999999999999999999999999876433
No 19
>4gm6_A PFKB family carbohydrate kinase; enzyme function initiative, transferase; 2.00A {Listeria grayi dsm 20601}
Probab=100.00 E-value=2.2e-43 Score=370.42 Aligned_cols=316 Identities=13% Similarity=0.093 Sum_probs=242.2
Q ss_pred CCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008168 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 203 ~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~ 282 (575)
.|++|+|||++++|+.+... . ++ .....+...+||+++|+|++|++||.+|.|+|.||+|.+|++
T Consensus 23 mm~kv~~~GE~m~~l~p~~~----~-------~~----~~~~~~~~~~GG~~aNvA~~larLG~~~~~ig~vG~D~~G~~ 87 (351)
T 4gm6_A 23 MMKQVVTIGELLMRLSTQQG----I-------PF----SQTTALDIHIGGAEANVAVNLSKLGHPTRIATVVPANPIGKM 87 (351)
T ss_dssp --CEEEEECCCEEEEECCTT----C-------CG----GGCSEEEEEEECHHHHHHHHHHHTTCCEEEEEEECSSHHHHH
T ss_pred ccCCEEEEcceeEEecCCCC----C-------Cc----cccCeEEEecCChHHHHHHHHHHcCCCeEEEEEeCCCHHHHH
Confidence 45689999999999986531 0 11 124778899999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEe-cCCccccCCccccc-hhhhccCcEEEEecccc-cccch
Q 008168 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCV-KPCAEDALTKSEIN-IDVLKEAKMFYFSTHSM-LERNM 359 (575)
Q Consensus 283 l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~-~~ga~~~lt~~~i~-~~~l~~ad~v~~sg~~l-~~~~~ 359 (575)
+++.|++.||+++++...++.+|+.+++..+..+.+.+.+. ...+...+...++. ...++++++||++|+.+ ..+..
T Consensus 88 l~~~L~~~GVdt~~v~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~g~~l~~~~~~ 167 (351)
T 4gm6_A 88 AVEHLWRHQVDTAFVVEAGDRLGTYYLESGTALKAPSVVYDRQHSSFARHKSMDWDLSELLKGIRVLHVSGITIALSTFW 167 (351)
T ss_dssp HHHHHHHTTEECTTEEECSSCCCEEEEECCBTTBCCEEEEECTTCHHHHCCCCCCCHHHHHTTEEEEEEEHHHHHHCHHH
T ss_pred HHHHHHHcCCCcccccccCCccceeEEEEccCCcceEEEEccccchhhhCCccccCHHHHHhhcccceecccchhhchhH
Confidence 99999999999999988877666665555555556555432 22333345555554 35788999999999743 45567
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccC
Q 008168 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVH 439 (575)
Q Consensus 360 ~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~ 439 (575)
.+.+.++++.|+++|++|+||||+++.+|. .+..++.+.++++++|++++|++|+..|++.......
T Consensus 168 ~~~~~~~~~~ak~~g~~v~~D~n~r~~lw~-~~~~~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~------------ 234 (351)
T 4gm6_A 168 LEMVVKIIREAKRNGIKISFDMNYRAKLWE-LEAAKRAYQQLLPLVDYCSAGQMDAVAFFEISSETTD------------ 234 (351)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCTTTSC-HHHHHHHHHHHGGGCSEEECCHHHHHHTSCCCTTCSC------------
T ss_pred HHHHHHHHHHHHHcCCCcccCCCcCchhhh-hhhHHHHHHHHHHhCCccccCHHHHHHHhCCCCchhH------------
Confidence 788999999999999999999999999995 4566788889999999999999999999987643211
Q ss_pred CcHHHHHHHhh-----cCCCEEEEEcCCC--cEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCC
Q 008168 440 YEPEVIAPLWH-----ENLKVLFVTNGTS--KVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHL 512 (575)
Q Consensus 440 ~~~e~~~~l~~-----~g~k~VVVT~G~~--Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~ 512 (575)
..+....... .+.+.++|+.+.. |+.++..+...++++++. .+ |||||||||+|+|||+++|++|
T Consensus 235 -~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~--VvDttGAGDaF~ag~l~~l~~g--- 306 (351)
T 4gm6_A 235 -YYQAMHDKYPNIELFYATKRTVISASHHLLQGHLWTQGECWESEEYAI--YP--IVDRVGGGDAYTAAVLHGILSE--- 306 (351)
T ss_dssp -HHHHHHHHCTTCCEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE--CS--CSCCTTHHHHHHHHHHHHHHTT---
T ss_pred -HHHHHHhhhhhhhhhhccccceeeeccCCceEEEEeCCceEEeCCCCC--CC--cCCCCChhHHHHHHHHHHHHCC---
Confidence 1122222211 1233455655543 567777776666655421 23 7999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCCCCCC
Q 008168 513 ITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEPDPYG 559 (575)
Q Consensus 513 ~~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~~~~~ 559 (575)
+++++|+++|+++||++|++.|+.+.+| .++|++|+.+....
T Consensus 307 ----~~~~~al~~A~aaaal~v~~~Ga~~~~~-~~ev~~~l~~~~~~ 348 (351)
T 4gm6_A 307 ----WRPDETVKFATAAAGLKHSIHGDINPFD-EKTIADFAADKSRA 348 (351)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTSSSSSCCCC-HHHHHHHHHC----
T ss_pred ----CCHHHHHHHHHHHHHHHhCCCCCCCCCC-HHHHHHHHhCCCCC
Confidence 9999999999999999999999988776 58999999776543
No 20
>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A*
Probab=100.00 E-value=2.3e-43 Score=371.60 Aligned_cols=315 Identities=18% Similarity=0.166 Sum_probs=254.4
Q ss_pred cccCC--CCcEEEECcceeeeeccCCCCCC------Cc-------chhhhhhhcccccCCCceEEecCChHHHHHHHHHH
Q 008168 199 FTYGW--PPLVCCFGSAQHAFVPSGRPANR------LI-------DHEIHERMKDALWAPEKFIRSPGGCTGSAAIALAR 263 (575)
Q Consensus 199 ~~~~~--~~~VlviG~~~vDii~~~~~~~~------lp-------~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLar 263 (575)
++|.. +++|+|||++++|++..+. .. ++ .++.+..+.+.+ ......+||+++|+|++|++
T Consensus 18 ~~~~~m~~~~v~~iG~~~vD~~~~v~--~~~l~~~~l~~g~~~li~~~~~~~l~~~~---~~~~~~~GG~~~N~A~~la~ 92 (352)
T 4e3a_A 18 LYFQSMTRFDVLTVGNAIVDIISRCN--DQFLIDNQITKAAMNLIDAERAELLYSRM---GPALEASGGSAGNTAAGVAN 92 (352)
T ss_dssp -----CCSEEEEEECCCEEEEEEECC--HHHHHHTTCCTTSEEECCHHHHHHHHHHS---CSCEEEECCHHHHHHHHHHH
T ss_pred cCHhHCCcccEEEECCceeeEEEecC--HHHHHHcCCCCCcceEeCHHHHHHHHHHh---hhccEecCCHHHHHHHHHHH
Confidence 44544 5689999999999998763 11 11 112222222211 24568999999999999999
Q ss_pred cCCCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhcc
Q 008168 264 LGGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKE 343 (575)
Q Consensus 264 LG~~v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ 343 (575)
||.++.++|.||+|.+|+++++.|++.||++.++.+.++.+|+.++++++++|+|++. .+.++...++++++....+..
T Consensus 93 LG~~~~~ig~vG~D~~G~~l~~~l~~~GV~~~~~~~~~~~~T~~~~v~v~~~g~r~~~-~~~ga~~~l~~~~~~~~~~~~ 171 (352)
T 4e3a_A 93 LGGKAAYFGNVAADQLGDIFTHDIRAQGVHYQTKPKGAFPPTARSMIFVTEDGERSMN-TYLGACVELGPEDVEADVVAD 171 (352)
T ss_dssp HTCCEEEECCCCSSHHHHHHHHHHHHTTCEECCCCCCSSSCCEEEEEEECTTSCEEEE-EECGGGGGCCGGGCCHHHHHT
T ss_pred cCCCeEEEEEECCChHHHHHHHHHHHcCCccceeeccCCCCCeEEEEEEcCCCceEEE-eccChhhcCChhhCCHHHHhh
Confidence 9999999999999999999999999999999998877777999999999989999875 556888889999998888999
Q ss_pred CcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhc--cCeEeecCHHHHHHhhCC
Q 008168 344 AKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT--LADVIEVTKQELEFLCGI 421 (575)
Q Consensus 344 ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~--~aDIl~~N~~Ea~~L~g~ 421 (575)
+++||++|+.+..+...+.+.++++.++++|++|+||++.+. + ....++.+.++++ ++|+|++|++|+..|+|.
T Consensus 172 ~~~v~~~G~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~--~--~~~~~~~l~~ll~~~~~dil~~N~~Ea~~l~g~ 247 (352)
T 4e3a_A 172 AKVTYFEGYLWDPPRAKEAILDCARIAHQHGREMSMTLSDSF--C--VDRYRGEFLDLMRSGKVDIVFANRQEALSLYQT 247 (352)
T ss_dssp EEEEEEEGGGGSSSSHHHHHHHHHHHHHHTTCEEEEECCCHH--H--HHHHHHHHHHHHHTTSCCEEEEEHHHHHHHTTC
T ss_pred CCEEEEeeeecCCchHHHHHHHHHHHHHHcCCEEEEECCchh--h--HHHHHHHHHHHhcccCCcEEEeCHHHHHHHhCC
Confidence 999999998655556788899999999999999999986321 1 2334566788898 999999999999999986
Q ss_pred CCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHH
Q 008168 422 KPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAG 501 (575)
Q Consensus 422 ~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AG 501 (575)
.. ..++++.+. .+++.||||+|++|+++++++...++++ +++. .++|||||||+|+||
T Consensus 248 ~~-----------------~~~a~~~l~-~~~~~vvvT~G~~G~~~~~~~~~~~~~~---~~v~-~vvDttGAGDaF~ag 305 (352)
T 4e3a_A 248 DD-----------------FEEALNRIA-ADCKIAAVTMSENGAVILKGRERYYVNA---IRIR-EVVDTTGAGDLFASG 305 (352)
T ss_dssp SC-----------------HHHHHHHHH-HHSSEEEEECGGGCEEEEETTEEEEECC---CCCS-CCSCCTTHHHHHHHH
T ss_pred CC-----------------HHHHHHHHh-cCCCEEEEEECCCceEEEECCEEEEECC---ccCC-CCcCCCChHHHHHHH
Confidence 31 124445554 4789999999999999998775555554 3443 279999999999999
Q ss_pred HHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHh
Q 008168 502 IMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEE 552 (575)
Q Consensus 502 fl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~ 552 (575)
|+++|++| +++++|+++|+++|+++|++.|+.+.+|.++.+++.
T Consensus 306 fl~~l~~g-------~~l~~a~~~A~~aAa~~v~~~G~~~~~~~~~~~~~~ 349 (352)
T 4e3a_A 306 FLYGYTQG-------RSLEDCGKLGCLAAGIVIQQIGPRPMTSLSEAAKQA 349 (352)
T ss_dssp HHHHHHTT-------CCHHHHHHHHHHHHHHHTTSSSSSCSSCHHHHHHHT
T ss_pred HHHHHHcC-------CCHHHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHh
Confidence 99999999 999999999999999999999999998888887754
No 21
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=3.4e-42 Score=361.49 Aligned_cols=296 Identities=16% Similarity=0.178 Sum_probs=248.5
Q ss_pred CCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008168 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l 283 (575)
+|+|+|||++++|++... +++|.+ .....+..+...+||+++|+|++|++||.++.++|.||+|.+|+++
T Consensus 29 ~~~i~viG~~~iD~~~~~---~~~p~~-------~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~i 98 (343)
T 2rbc_A 29 GKHVLCVGAAVLDTLFRV---ADMPKG-------EGKVLPYEVLQIAEGMASSAAYAVHRMGGRASLWGAVGDDETGTRI 98 (343)
T ss_dssp CCEEEEESCCEEEEEEEC---SSCCCS-------SSCCCCSEEEEEEECHHHHHHHHHHHTTCEEEEECEEESSHHHHHH
T ss_pred CCeEEEECcceEEEEeec---CCCCCC-------CCeEeeeeeEEcCCcHHHHHHHHHHHcCCceEEEEEeCCCHHHHHH
Confidence 458999999999999875 344431 1122446788999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHH
Q 008168 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTT 363 (575)
Q Consensus 284 ~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e~~ 363 (575)
++.|++.||++.++.+.++.+|++++++++++|+++++ ...++...++++++....+..+++||++++. .+.+
T Consensus 99 ~~~L~~~GVd~~~v~~~~~~~T~~~~v~~~~~g~r~~~-~~~~~~~~~~~~~l~~~~l~~~~~v~~~~~~------~~~~ 171 (343)
T 2rbc_A 99 LRDLSESGIDTSGMTVAPGARSALSTIIIDNRGERLIV-PFYDHRLHEKKRACTPEDIALFDAVLVDVRW------PELA 171 (343)
T ss_dssp HHHHHHTTEECTTCEEETTCCCEEEEEEECTTSCEEEE-EECCGGGGSSCCCCCHHHHTTCSEEEECSSS------HHHH
T ss_pred HHHHHHcCCceeeEEEcCCCCCceEEEEECCCCCEEEE-EcCCCcccCChhHhcHhhhCCCCEEEEcCCC------HHHH
Confidence 99999999999999887778999999999888998774 4556666677777766678899999998742 2567
Q ss_pred HHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHH-hhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcH
Q 008168 364 LQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQ-AWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEP 442 (575)
Q Consensus 364 ~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~-ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~ 442 (575)
..+++.+++.|++|+|||... .+.+.+ +++++|+|++|.+|+..|+|... ..
T Consensus 172 ~~~~~~a~~~g~~v~~Dp~~~----------~~~~~~~ll~~~dil~~N~~Ea~~l~g~~~-----------------~~ 224 (343)
T 2rbc_A 172 LDVLTVARALGKPAILDGDVA----------PVETLEGLAPAATHIVFSEPAATRLTGLET-----------------VK 224 (343)
T ss_dssp HHHHHHHHHTTCCEEEEECSC----------CHHHHHHHGGGCSEEEEEHHHHHHHHCCSS-----------------HH
T ss_pred HHHHHHHHHCCCEEEEECCcc----------ccccHHHHHhcCCEEEeCHHHHHHHcCCCC-----------------HH
Confidence 888999999999999998531 234566 89999999999999999998641 23
Q ss_pred HHHHHHhhcCC-CEEEEEcCCCcEEEEEcC--CceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhH
Q 008168 443 EVIAPLWHENL-KVLFVTNGTSKVHYYTKE--DDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYL 519 (575)
Q Consensus 443 e~~~~l~~~g~-k~VVVT~G~~Ga~v~~~~--~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl 519 (575)
++++.|.+.|+ +.||||+|.+|+++++.+ ...++++ ++++ ++|||||||+|+|||+++|++| +++
T Consensus 225 ~~~~~l~~~g~~~~VvvT~G~~G~~~~~~~~~~~~~~~~---~~v~--vvDttGAGDaF~ag~~~~l~~g-------~~~ 292 (343)
T 2rbc_A 225 DMLPVLHARYPQTFIAVTAGPAGCWWTEADDPTVHFQTT---MQVE--AVDTLAAGDIFHGTFALAMAEG-------MQS 292 (343)
T ss_dssp HHHHHHHHHSTTSEEEEECGGGCEEEECTTCCCEEEECC---CCCC--CSCCTTHHHHHHHHHHHHHHTT-------CCH
T ss_pred HHHHHHHHhCCCceEEEEECCcceEEEeCCCceeEEecC---CCCc--cccCCChHHHHHHHHHHHHHcC-------CCH
Confidence 56777888898 999999999999998776 4445544 4454 8999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 520 VRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 520 ~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
++|+++|+++|+++|++.|+..++|++++|++++.+
T Consensus 293 ~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~ 328 (343)
T 2rbc_A 293 RAAVRLSSVAAALKCTVFGGRIGAPTREETEEAMRQ 328 (343)
T ss_dssp HHHHHHHHHHHHHHHTSSSGGGGCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCccCCCCHHHHHHHHHh
Confidence 999999999999999999998889999999999854
No 22
>3vas_A Putative adenosine kinase; ribokinase, enzyme, transferase; HET: ADN; 2.26A {Schistosoma mansoni} PDB: 4dc3_A* 3vaq_A* 3uq6_A* 3uq9_A*
Probab=100.00 E-value=1e-42 Score=369.00 Aligned_cols=316 Identities=11% Similarity=0.109 Sum_probs=251.7
Q ss_pred cccccCCC--CcEEEECcceeeeeccCCC-----------------CCCCcchhhhhhhcccccCCCceEEecCChHHHH
Q 008168 197 ISFTYGWP--PLVCCFGSAQHAFVPSGRP-----------------ANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSA 257 (575)
Q Consensus 197 i~~~~~~~--~~VlviG~~~vDii~~~~~-----------------~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~Nv 257 (575)
++.+++.| .+|+|+|++++|++..+.. ..++| ..+.......+...+||+++|+
T Consensus 15 ~~~~~~~m~~~~v~~iG~~~vD~~~~v~~~~l~~~~l~~g~~~l~~~~~~P-------~~ge~~~~~~~~~~~GG~~~N~ 87 (370)
T 3vas_A 15 VPRGSHDLSEGYVFGMGNPLLDIIVDADDFMYRKYNLKKDNIVLAEEKHMT-------IYDEIQKKKKLNYIAGGATLNT 87 (370)
T ss_dssp ------CCCTTCEEEEECCEEEEEEECCTHHHHHTTCCTTEEEECCGGGTH-------HHHHHTTSSSCEEEEECHHHHH
T ss_pred ccCCccccCCccEEEECCcceeEEEecCHHHHHHcCCCCCceEEccHHHHH-------HHHHHhhcCCeEEecCCHHHHH
Confidence 44555555 4799999999999988731 00233 2222334567889999999999
Q ss_pred HHHHHHc---CCCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCcc
Q 008168 258 AIALARL---GGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKS 334 (575)
Q Consensus 258 A~aLarL---G~~v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~ 334 (575)
|++|++| |.++.|+|.||+|.+|+++++.|++.||++.++...++.+|++++++++ +|++++. .+.+++..++++
T Consensus 88 A~~la~L~~~G~~~~~ig~vG~D~~G~~~~~~L~~~GV~~~~~~~~~~~~Tg~~~i~v~-~g~rt~~-~~~ga~~~l~~~ 165 (370)
T 3vas_A 88 VKMIQWIIQKPFVCSYVGCIGADIQGKYIKNDCSALDLVTEFQIAEEPLMTGKVAVLVS-EKLRSMV-TYLGAACDLSLA 165 (370)
T ss_dssp HHHHHHHHCCTTCEEEEEEECSSHHHHHHHHHHHHTTCEECCEECCTTCCEEEEEEEEC-SSCEEEE-EEEEGGGGCCHH
T ss_pred HHHHHHhcCCCCcEEEEEEEcCChhHHHHHHHHHHcCCcccccccCCCCCceEEEEEEe-CCceeEE-EccchhhhCCHH
Confidence 9999999 9999999999999999999999999999999987756789999999998 7888775 557888888888
Q ss_pred ccch----hhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeec
Q 008168 335 EINI----DVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEV 410 (575)
Q Consensus 335 ~i~~----~~l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~ 410 (575)
++.. ..+..+++||++|+.+. .+.+.+.++++.++++|+++++|+.. ++|. ...++.+.++++++|||++
T Consensus 166 ~~~~~~~~~~~~~~~~v~~~g~~~~--~~~~~~~~~~~~a~~~g~~v~ld~~~--~~~~--~~~~~~l~~ll~~~dil~~ 239 (370)
T 3vas_A 166 HIEQPHVWSLVEKAQVYYIAGFVIN--TCYEGMLKIAKHSLENEKLFCFNLSA--PFLS--QFNTKEVDEMISYSNIVFG 239 (370)
T ss_dssp HHTSHHHHHHHHHCSEEEEEGGGHH--HHHHHHHHHHHHHHHTTCEEEEECCC--HHHH--HHCHHHHHHHHTTCSEEEE
T ss_pred HcCchhhHHHHhhCCEEEEEeeecc--CCHHHHHHHHHHHHHcCCEEEEECCc--HHHH--HHHHHHHHHHHhhCCEEEc
Confidence 7763 56889999999997542 35678899999999999999999852 4442 3345678889999999999
Q ss_pred CHHHHHHhhCCCCCCcccccccccccccCCcHHHHHHHhhc-------CCCEEEEEcCCCcEEEEE--cCCceeEecccC
Q 008168 411 TKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHE-------NLKVLFVTNGTSKVHYYT--KEDDGAVLGTED 481 (575)
Q Consensus 411 N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~-------g~k~VVVT~G~~Ga~v~~--~~~~~~v~a~~~ 481 (575)
|+.|+..|+|....+..+ ..++++.|.+. +++.||||+|++|+++++ .+...++++++.
T Consensus 240 N~~Ea~~l~g~~~~~~~~------------~~~~~~~l~~~~~~~~~~g~~~VvvT~G~~Ga~~~~~~~~~~~~~~~~~v 307 (370)
T 3vas_A 240 NESEAEAYGEVHGLLEDT------------VHATARYIADLPFADGKKRKRLVIITRGKNPLLYTDSSDSEIHQFMVEQF 307 (370)
T ss_dssp EHHHHHHHHHHTTCCSSH------------HHHHHHHHHHSCCTTCCCCCCEEEEEETTEEEEEEETTCSSCEEECCCCC
T ss_pred CHHHHHHHhcccCCCccC------------HHHHHHHHHhhcccccccCCCEEEEecCCCceEEEEcCCCeEEEEecccc
Confidence 999999998864322111 23566777764 899999999999999998 666566665322
Q ss_pred CCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHH
Q 008168 482 APLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGME 550 (575)
Q Consensus 482 ~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve 550 (575)
++.+ +||||||||+|+|||+++|++| +++++|+++|+++|+++|++.|+ .+|+.++++
T Consensus 308 ~~~~--vvDttGAGDaF~ag~l~~l~~g-------~~l~~a~~~A~aaAa~~v~~~G~--~~p~~~~~~ 365 (370)
T 3vas_A 308 KDDQ--IIDTNGAGDAFAAGFIADYIRG-------KPMITSLHAAVKAAAYIICRSGF--SLGSRDSYS 365 (370)
T ss_dssp CTTT--CSCCTTHHHHHHHHHHHHHTTT-------CCHHHHHHHHHHHHHHHHTSSSS--CCCCGGGGC
T ss_pred cCCC--cCCCCChHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHcccCC--cCCCCccce
Confidence 1113 8999999999999999999999 99999999999999999999999 578887765
No 23
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A*
Probab=100.00 E-value=3.8e-42 Score=356.06 Aligned_cols=284 Identities=17% Similarity=0.206 Sum_probs=240.2
Q ss_pred CCCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008168 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 202 ~~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~ 281 (575)
+.|++|+|||++++|++... +++|.+ . .......+...+||+++|+|++|++||.++.++|.||+|.+|+
T Consensus 17 ~mm~~i~viG~~~iD~~~~v---~~~p~~------g-~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~ 86 (310)
T 3go6_A 17 PMAPRVCVVGSVNMDLTFVV---DALPRP------G-ETVLAASLTRTPGGKGANQAVAAARAGAQVQFSGAFGDDPAAA 86 (310)
T ss_dssp --CCEEEEECCCEEEEEEEC---SSCCCT------T-CCCCCSEEEEEEECHHHHHHHHHHHTTCEEEEECEECSSHHHH
T ss_pred cccCCEEEECCceEEEEEec---CCCCCC------C-CeEEecceeecCCCHHHHHHHHHHHCCCCeEEEEEECCCHHHH
Confidence 45678999999999999875 355531 1 1223467889999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHH
Q 008168 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKS 361 (575)
Q Consensus 282 ~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e 361 (575)
++++.|++.||++.++... +.+|+++++.++.+|++++. .+.++...++ ++ ...+..+++||+++. .+.+
T Consensus 87 ~i~~~L~~~gV~~~~v~~~-~~~T~~~~~~~~~~g~~~~~-~~~ga~~~l~--~~-~~~l~~~~~v~~~~~-----~~~~ 156 (310)
T 3go6_A 87 QLRAHLRANAVGLDRTVTV-PGPSGTAIIVVDASAENTVL-VAPGANAHLT--PV-PSAVANCDVLLTQLE-----IPVA 156 (310)
T ss_dssp HHHHHHHHTTCBCTTCEEC-SSCCEEEEEEECTTSCEEEE-EECGGGGGCC--CC-TTTTTTCSEEEECSS-----SCHH
T ss_pred HHHHHHHHcCCccceeEec-CCCCCEEEEEEcCCCCEEEE-ecCChhhhHH--HH-HHHhhcCCEEEECCC-----CCHH
Confidence 9999999999999999654 46899999999988998875 4467766666 44 567889999999852 3467
Q ss_pred HHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCc
Q 008168 362 TTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYE 441 (575)
Q Consensus 362 ~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~ 441 (575)
.+..+++.+++.|++|+||++....+ .+.+..+++++|+|++|++|+..|++.
T Consensus 157 ~~~~~~~~a~~~g~~v~~D~~~~~~~-------~~~~~~ll~~~dil~~N~~Ea~~l~g~-------------------- 209 (310)
T 3go6_A 157 TALAAARAAQSADAVVMVNASPAGQD-------RSSLQDLAAIADVVIANEHEANDWPSP-------------------- 209 (310)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSSSCC-------HHHHHHHHHHCSEEEEEHHHHHHSSSC--------------------
T ss_pred HHHHHHHHHHHcCCEEEEcCCccccc-------hHHHHHHHhhCCEEEeCHHHHHHHhCC--------------------
Confidence 88899999999999999999854432 456778899999999999999998752
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHc----CCCCCCCch
Q 008168 442 PEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTV----QPHLITDKG 517 (575)
Q Consensus 442 ~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~----g~~~~~d~~ 517 (575)
++.||||+|++|+++++++...++++ ++++ ++|||||||+|+|||+++|++ | +
T Consensus 210 -----------~~~vvvt~G~~Ga~~~~~~~~~~~~~---~~v~--vvdttGAGDaF~ag~~~~l~~~~~~g-------~ 266 (310)
T 3go6_A 210 -----------PTHFVITLGVRGARYVGADGVFEVPA---PTVT--PVDTAGAGDVFAGVLAANWPRNPGSP-------A 266 (310)
T ss_dssp -----------CSEEEEECGGGCEEEEETTEEEEECC---CCCC--CSCCTTHHHHHHHHHHHHCCSSSCCH-------H
T ss_pred -----------CCEEEEEECCCCEEEEECCceEEeCC---CCCC--cCcCCCchHHHHHHHHHHHHhcccCC-------C
Confidence 57999999999999998875555554 4554 799999999999999999999 8 9
Q ss_pred hHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 518 YLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 518 sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
++++|+++|+++|+++|++.|+..++|++++|+++|..
T Consensus 267 ~l~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~ 304 (310)
T 3go6_A 267 ERLRALRRACAAGALATLVSGVGDCAPAAAAIDAALRA 304 (310)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSTTCCCCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHh
Confidence 99999999999999999999999899999999999855
No 24
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A
Probab=100.00 E-value=1.1e-42 Score=357.85 Aligned_cols=296 Identities=14% Similarity=0.118 Sum_probs=243.3
Q ss_pred CCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008168 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 203 ~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~ 282 (575)
+|++|+|+|++++|++... +++|.+ .+ ......+...+||+++|+|++|++||.++.++|.||+|.+|++
T Consensus 4 ~m~~i~viG~~~iD~~~~~---~~~p~~------~~-~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D~~g~~ 73 (302)
T 2c4e_A 4 KMEKITCVGHTALDYIFNV---EKFPEP------NT-SIQIPSARKYYGGAAANTAVGIKKLGVNSELLSCVGYDFKNSG 73 (302)
T ss_dssp CEEEEEEESCCEEEEEEEC---SSCCCT------TC-CCCCSCEEEEEECHHHHHHHHHHHTTCEEEEECEECTTTTTSH
T ss_pred CcCcEEEECceeEEEEecc---cccCCC------Cc-eeeecceeecCCCHHHHHHHHHHHCCCceEEEEEEeCCCchHH
Confidence 4568999999999999865 345431 11 1234568899999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHH
Q 008168 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKST 362 (575)
Q Consensus 283 l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e~ 362 (575)
+++.|++.||++.++.+.++.+|++++++++.+|++++. .+.++...++++++.. ..+++||+++. ..+.
T Consensus 74 i~~~l~~~gv~~~~~~~~~~~~T~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~---~~~~~v~~~~~------~~~~ 143 (302)
T 2c4e_A 74 YERYLKNLDINISKLYYSEEEETPKAWIFTDKDNNQITF-FLWGAAKHYKELNPPN---FNTEIVHIATG------DPEF 143 (302)
T ss_dssp HHHHHHHTTCBCTTCEECSSSCCCEEEEEECSSCCEECC-EECGGGGGGGGCCCCC---CCEEEEEECSS------CHHH
T ss_pred HHHHHHHcCCcccceEeeCCCCCceEEEEECCCCCEEEE-EeCChhhhCCHhhcCc---ccCCEEEEeCC------CcHH
Confidence 999999999999988877778899999999888988765 4456666677766643 67999999852 1277
Q ss_pred HHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcH
Q 008168 363 TLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEP 442 (575)
Q Consensus 363 ~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~ 442 (575)
+.++++.++++| +|+|||+.+...|. .+.+.++++++|+|++|.+|+..|+|.....
T Consensus 144 ~~~~~~~a~~~g-~v~~D~~~~~~~~~-----~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~----------------- 200 (302)
T 2c4e_A 144 NLKCAKKAYGNN-LVSFDPGQDLPQYS-----KEMLLEIIEHTNFLFMNKHEFERASNLLNFE----------------- 200 (302)
T ss_dssp HHHHHHHHBTTB-EEEECCGGGGGGCC-----HHHHHHHHHTCSEEEEEHHHHHHHHHHHTCC-----------------
T ss_pred HHHHHHHHHhcC-CEEEeCchhhhhhh-----HHHHHHHHhcCCEEEcCHHHHHHHhCCCCcc-----------------
Confidence 888999999999 99999985443442 4556788999999999999999998753211
Q ss_pred HHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHH
Q 008168 443 EVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRT 522 (575)
Q Consensus 443 e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eA 522 (575)
.. .|++. ++.||||+|.+|+++++.+...++++ ++++ .++|||||||+|+|||+++|++| +++.+|
T Consensus 201 ~~--~l~~~-~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~-~~vdt~GAGDaf~a~~~~~l~~g-------~~~~~a 266 (302)
T 2c4e_A 201 ID--DYLER-VDALIVTKGSKGSVIYTKDKKIEIPC---IKAG-KVIDPTGAGDSYRAGFLSAYVKG-------YDLEKC 266 (302)
T ss_dssp HH--HHHTT-CSEEEEECGGGCEEEECSSCEEEECC---CCCS-CCSCCTTHHHHHHHHHHHHHHTT-------CCHHHH
T ss_pred HH--HHHhc-CCEEEEEECCCceEEEeCCcEEEeCC---ccCC-cCCcCCCchHHHHHHHHHHHHcC-------CCHHHH
Confidence 11 56667 89999999999999998765445544 3342 16999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 523 IKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 523 l~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
+++|+++|+++|++.|+..++|++++|++++.+
T Consensus 267 ~~~a~~~aa~~~~~~G~~~~~p~~~ev~~~~~~ 299 (302)
T 2c4e_A 267 GLIGAATASFVVEAKGCQTNLPTWDKVVERLEK 299 (302)
T ss_dssp HHHHHHHHHHHTTSSSSSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccccccCCCHHHHHHHHHh
Confidence 999999999999999998889999999999864
No 25
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A*
Probab=100.00 E-value=1.8e-42 Score=356.31 Aligned_cols=286 Identities=15% Similarity=0.123 Sum_probs=241.2
Q ss_pred CCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008168 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l 283 (575)
+|+|+|+|++++|++... +++|.+ .+ ......+...+||+++|+|++|++||.++.++|.||+|.+|+++
T Consensus 2 ~~~i~viG~~~iD~~~~~---~~~p~~------g~-~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~i~~vG~D~~g~~i 71 (299)
T 3ikh_A 2 SLRVYVTGNITVDETWSI---PDIPKK------GA-SIHGVKVSQDIGGKGANQAIILSRCGIETRLIAATGNDSNGAWI 71 (299)
T ss_dssp CCCEEEECCCEEEEEEEC---SSCCCT------TC-EEECEEEEEEEECHHHHHHHHHHHTTCCEEEECCCCSSHHHHHH
T ss_pred CceEEEECceEEEEEEec---CCCCCC------CC-eEEeeeeeeccCCHHHHHHHHHHHCCCCeEEEEEECCCHHHHHH
Confidence 368999999999999875 455532 11 11335678999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccc--hhhhccCcEEEEecccccccchHH
Q 008168 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN--IDVLKEAKMFYFSTHSMLERNMKS 361 (575)
Q Consensus 284 ~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~--~~~l~~ad~v~~sg~~l~~~~~~e 361 (575)
++.|++.||++.++. .++.+|++++++++.+|+++++ .++++...++++++. ...+..+++||+++. .+.+
T Consensus 72 ~~~l~~~gv~~~~v~-~~~~~T~~~~~~~~~~g~~~~~-~~~~a~~~l~~~~~~~~~~~~~~~~~v~~~g~-----~~~~ 144 (299)
T 3ikh_A 72 RQQIKNEPLMLLPDG-HFNQHSDTSIILNSADGDNAII-TTTAAADTFSLDEMIPHMADAVAGDILLQQGN-----FSLD 144 (299)
T ss_dssp HHHGGGSSCEEESSS-CCSSCCEEEEEECSSSCSCEEE-EECHHHHHCCHHHHGGGGTTCCTTCEEEECSC-----SCHH
T ss_pred HHHHHHcCCceeeeE-ecCCCCcEEEEEEcCCCCeEEE-EeCCccccCCHHHHHHHHhhhccCCEEEECCC-----CCHH
Confidence 999999999999984 5667899999999888998875 456777788887775 346789999999863 2467
Q ss_pred HHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCc
Q 008168 362 TTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYE 441 (575)
Q Consensus 362 ~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~ 441 (575)
.+.++++.++++|++|+|||+.... .+..+++++|+|++|++|++.|++
T Consensus 145 ~~~~~~~~a~~~g~~v~~D~~~~~~----------~~~~ll~~~dil~~N~~E~~~l~g--------------------- 193 (299)
T 3ikh_A 145 KTRALFQYARSRGMTTVFNPSPVNP----------DFCHLWPLIDIAVVNESEAELLQP--------------------- 193 (299)
T ss_dssp HHHHHHHHHHHTTCEEEECCCSCCG----------GGGGCGGGCSEEEEEHHHHHHHCC---------------------
T ss_pred HHHHHHHHHHHcCCEEEEccccchh----------hHHHHHhhCCEEEecHHHHHHHhc---------------------
Confidence 7889999999999999999975432 355788999999999999999875
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHH-HHHHHHHcCCCCCCCchhHH
Q 008168 442 PEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVA-GIMRMLTVQPHLITDKGYLV 520 (575)
Q Consensus 442 ~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~A-Gfl~~L~~g~~~~~d~~sl~ 520 (575)
.|++.||||+|++|+++++++...++++ ++++ ++|||||||+|+| ||+++|++| +++.
T Consensus 194 ---------~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvDttGAGDaf~a~~~~~~l~~g-------~~~~ 252 (299)
T 3ikh_A 194 ---------YGVKTLVITQGAAGAWLVQEGQRQFCPA---VPAE--ALDTTGAGDTFLAVMLASALLRG-------VAPD 252 (299)
T ss_dssp ---------CSCSEEEEECGGGCEEEECSSCEEEECC---CCCC--CSCCTTHHHHHHHHHHHHHHHTT-------SSSC
T ss_pred ---------CCCCEEEEEECCCceEEEeCCceEEeCC---CCCc--cCCCCCchHHHHHHHHHHHHHcC-------CCHH
Confidence 3778999999999999998776556554 3454 7999999999999 999999999 9999
Q ss_pred H-HHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCCCCC
Q 008168 521 R-TIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEPDPY 558 (575)
Q Consensus 521 e-Al~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~~~~ 558 (575)
+ |+++|+++|+++|++.|+..++|++++|+++|+....
T Consensus 253 ~~a~~~a~~~aa~~v~~~G~~~~~p~~~ev~~~l~~~~~ 291 (299)
T 3ikh_A 253 ALALAHASRAAAITVSRRGTLSAFPGSRELAALLTTDGA 291 (299)
T ss_dssp HHHHHHHHHHHHHHHHSSSSTTTSCCHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhCCCcccccCCCHHHHHHHHHhccc
Confidence 9 9999999999999999999899999999999977653
No 26
>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1
Probab=100.00 E-value=9.7e-42 Score=355.74 Aligned_cols=303 Identities=18% Similarity=0.253 Sum_probs=246.7
Q ss_pred CCCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008168 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 202 ~~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~ 281 (575)
..||+|+|||++++|++... +++|.+ .+ ......+...+||+++|+|++|++||.++.++|.||+|.+|+
T Consensus 22 ~~~~~vlviG~~~iD~~~~~---~~~p~~------g~-~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~ 91 (331)
T 2fv7_A 22 EEVAAVVVVGSCMTDLVSLT---SRLPKT------GE-TIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFGN 91 (331)
T ss_dssp --CCSEEEECCCEEEEEEEC---SSCCCT------TC-CCCCSEEEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHH
T ss_pred cccCCEEEECcccEEEEEec---CCCCCC------Cc-eEecCceEECcCCHHHHHHHHHHHCCCCeEEEEEECCChhHH
Confidence 34578999999999999875 355531 11 123456888999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccch--hhhccCcEEEEecccccccch
Q 008168 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI--DVLKEAKMFYFSTHSMLERNM 359 (575)
Q Consensus 282 ~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~--~~l~~ad~v~~sg~~l~~~~~ 359 (575)
++++.|++.||++.++.+.++.+|++++++++.+|++++. ...+++..++++++.. ..+..+++||+++. .+
T Consensus 92 ~l~~~L~~~Gv~~~~v~~~~~~~T~~~~v~~~~~g~~~~~-~~~ga~~~l~~~~~~~~~~~l~~~~~v~~~~~-----~~ 165 (331)
T 2fv7_A 92 DYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIV-IVAGANLLLNTEDLRAAANVISRAKVMVCQLE-----IT 165 (331)
T ss_dssp HHHHHHHTTTEECTTEEEESSSCCEEEEEEECTTSCEEEE-EECGGGGGCCHHHHHHTHHHHHHCSEEEECSS-----SC
T ss_pred HHHHHHHHcCCcceeeEecCCCCCceEEEEECCCCCeEEE-ecCCccccCCHHHHHHHHHhhccCCEEEEecC-----CC
Confidence 9999999999999999887778999999999888998775 4467777788777652 35788999999753 23
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccC
Q 008168 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVH 439 (575)
Q Consensus 360 ~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~ 439 (575)
.+.+..+++.+++.|++|+|||+.....| ...+++++|+|++|..|+..|+|....+..+
T Consensus 166 ~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~---------~~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~----------- 225 (331)
T 2fv7_A 166 PATSLEALTMARRSGVKTLFNPAPAIADL---------DPQFYTLSDVFCCNESEAEILTGLTVGSAAD----------- 225 (331)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCSCCTTC---------CTHHHHTCSEEEEEHHHHHHHHSSCCCSHHH-----------
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCcccccc---------hHHHHhcCCEEEeCHHHHHHHhCCCCCChhH-----------
Confidence 46788899999999999999998653333 2357789999999999999999865332111
Q ss_pred CcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcC--CceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCch
Q 008168 440 YEPEVIAPLWHENLKVLFVTNGTSKVHYYTKE--DDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKG 517 (575)
Q Consensus 440 ~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~--~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~ 517 (575)
..+.++.|++.|++.||||+|.+|+++++++ ...++++ ++++ ++|||||||+|+|||+++|++|+. +
T Consensus 226 -~~~~~~~l~~~g~~~VvvT~G~~G~~~~~~~~~~~~~~~~---~~v~--vvdttGAGDaf~a~~~~~l~~g~~-----~ 294 (331)
T 2fv7_A 226 -AGEAALVLLKRGCQVVIITLGAEGCVVLSQTEPEPKHIPT---EKVK--AVDTTGAGDSFVGALAFYLAYYPN-----L 294 (331)
T ss_dssp -HHHHHHHHHTTTCSEEEEECGGGCEEEEESSCCSCEEECC---CCCC--CSCCTTHHHHHHHHHHHHHHHCTT-----S
T ss_pred -HHHHHHHHHHcCCCEEEEEECCCceEEEECCCCceeEecC---CCCc--cCCCCCchHHHHHHHHHHHHhCCC-----C
Confidence 2356777888899999999999999999876 5555554 3454 799999999999999999998721 4
Q ss_pred hHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHH
Q 008168 518 YLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEE 551 (575)
Q Consensus 518 sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~ 551 (575)
++.+|+++|+++|+++|++.|+..++|++++|++
T Consensus 295 ~~~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~ 328 (331)
T 2fv7_A 295 SLEDMLNRSNFIAAVSVQAAGTQSSYPYKKDLPL 328 (331)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSGGGGCCCGGGSCG
T ss_pred CHHHHHHHHHHHHHHHhCCCCCccCCCCHHHHhh
Confidence 7999999999999999999999888999998765
No 27
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A*
Probab=100.00 E-value=1.7e-41 Score=354.52 Aligned_cols=306 Identities=15% Similarity=0.113 Sum_probs=246.5
Q ss_pred ccccCCCCcEEEECcceeeeeccCCCC-------CCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEE
Q 008168 198 SFTYGWPPLVCCFGSAQHAFVPSGRPA-------NRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAF 270 (575)
Q Consensus 198 ~~~~~~~~~VlviG~~~vDii~~~~~~-------~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~l 270 (575)
+++|+.+|+|+|+|++++|++...... +++|. ..+.+ ....+...+||+++|+|++|++||.++.+
T Consensus 4 ~~~~~~~m~i~v~G~~~~D~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~GG~~~NvA~~la~LG~~~~~ 76 (334)
T 2pkf_A 4 DLYFQSHMTIAVTGSIATDHLMRFPGRFSEQLLPEHLHK------VSLSF-LVDDLVMHRGGVAGNMAFAIGVLGGEVAL 76 (334)
T ss_dssp CSSSCCSSEEEEESCCEEEEEEECSSCTHHHHTTSCGGG------CCCCC-CCSEEEEEEECHHHHHHHHHHHTTCEEEE
T ss_pred cccCccCCeEEEECChhheEEEecChHHhhhhchhhccc------ccccc-ccccceecCCChHHHHHHHHHHcCCCeEE
Confidence 467888889999999999999764110 12221 11111 23567889999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchh--hhccCcEEE
Q 008168 271 MGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINID--VLKEAKMFY 348 (575)
Q Consensus 271 ig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~--~l~~ad~v~ 348 (575)
+|.||+| +|+ +++.|++.||+++++.+.++.+|+++++.++.+|++.+.+. .++...++++++... .+..++++|
T Consensus 77 i~~vG~D-~g~-i~~~L~~~gV~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~-~ga~~~~~~~~~~~~~~~l~~~~~v~ 153 (334)
T 2pkf_A 77 VGAAGAD-FAD-YRDWLKARGVNCDHVLISETAHTARFTCTTDVDMAQIASFY-PGAMSEARNIKLADVVSAIGKPELVI 153 (334)
T ss_dssp ECEECGG-GHH-HHHHHHTTTEECTTCEECSSCCCEEEEEEECTTCCEEEEEE-CGGGGGGGGCCHHHHHHHHCSCSEEE
T ss_pred EEEEeCc-hHH-HHHHHHHCCCceeeeEecCCCCceEEEEEEcCCCCEEEEEC-CchhhhCCHhhcChhhhhhcCCCEEE
Confidence 9999999 999 99999999999999988877899999999988888776433 566666666666432 357899999
Q ss_pred EecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCccc
Q 008168 349 FSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFD 428 (575)
Q Consensus 349 ~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d 428 (575)
+++. ..+.+.++++.++++|++|+|||+.+..+|. .+.+.++++++|++++|++|+..|+|.....
T Consensus 154 ~~~~------~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~-----~~~l~~~l~~~dil~~N~~E~~~l~g~~~~~--- 219 (334)
T 2pkf_A 154 IGAN------DPEAMFLHTEECRKLGLAFAADPSQQLARLS-----GEEIRRLVNGAAYLFTNDYEWDLLLSKTGWS--- 219 (334)
T ss_dssp EESC------CHHHHHHHHHHHHHHTCCEEEECGGGGGTSC-----HHHHHTTTTTCSEEEEEHHHHHHHHHHHCCC---
T ss_pred EcCC------ChHHHHHHHHHHHhcCCeEEEeccchhhhhh-----HHHHHHHHhcCCEEecCHHHHHHHhccCCCC---
Confidence 9864 2467788899999999999999987766664 3456789999999999999999998743211
Q ss_pred ccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCC-ceeEecccCCCCCCcccCccChhHHHHHHHHHHHH
Q 008168 429 TKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKED-DGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLT 507 (575)
Q Consensus 429 ~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~-~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~ 507 (575)
. ..+.+ +++.||||+|.+|++++++++ ..++++ ++++. ++|||||||+|+|||+++|+
T Consensus 220 -------------~---~~l~~-~~~~vvvt~G~~G~~~~~~~~~~~~~~~---~~v~~-vvDttGAGDaF~a~~~~~l~ 278 (334)
T 2pkf_A 220 -------------E---ADVMA-QIDLRVTTLGPKGVDLVEPDGTTIHVGV---VPETS-QTDPTGVGDAFRAGFLTGRS 278 (334)
T ss_dssp -------------H---HHHHT-TCSCEEEECGGGCEEEECTTSCEEEECC---CCCSC-CCCCTTHHHHHHHHHHHHHH
T ss_pred -------------H---HHHHh-cCCEEEEEeCCCCeEEEeCCCcEEEeCC---cCCCC-CCCCCCchHHHHHHHHHHHH
Confidence 1 12333 388999999999999998765 445544 34431 68999999999999999999
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 508 VQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 508 ~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
+| +++++|+++|+++|+++|++.|+..++|+++++++++.+
T Consensus 279 ~g-------~~~~~a~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~ 319 (334)
T 2pkf_A 279 AG-------LGLERSAQLGSLVAVLVLESTGTQEWQWDYEAAASRLAG 319 (334)
T ss_dssp TT-------CCHHHHHHHHHHHHHHHHTSSSSSCCCCCHHHHHHHHHH
T ss_pred cC-------CCHHHHHHHHHHHHHHHHhCCCCCcCCCCHHHHHHHHHH
Confidence 99 999999999999999999999999889999999999865
No 28
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=1e-41 Score=353.39 Aligned_cols=301 Identities=14% Similarity=0.091 Sum_probs=241.5
Q ss_pred CCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008168 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 203 ~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~ 282 (575)
.|++|+|+|++++|++.... +.|.+ .+. ....+...+||+++|+|++|++||.++.++|.||+|.+|++
T Consensus 2 ~m~~i~viG~~~~D~~~~~~---~~~~~------~~~--~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~ 70 (317)
T 2nwh_A 2 HMKKILVLGGAHIDRRGMIE---TETAP------GAS--NPGSWMEEAGGGGFNAARNLSRLGFEVRIIAPRGGDVTGEV 70 (317)
T ss_dssp -CCEEEEESCCEEEEEEEES---SSCCT------TSC--CCEEEEEEEECHHHHHHHHHHHTTCEEEEECEEESSHHHHH
T ss_pred CCCeEEEECchheEEeeccC---CCCCC------CCC--ceEeEEEeCCcHHHHHHHHHHhcCCCcEEEEeecCCchHHH
Confidence 46789999999999997652 22321 111 11247789999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccc--h--hhhccCcEEEEecccccccc
Q 008168 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN--I--DVLKEAKMFYFSTHSMLERN 358 (575)
Q Consensus 283 l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~--~--~~l~~ad~v~~sg~~l~~~~ 358 (575)
+++.|++.||++++ ...++.+|++++++++.+|++++.+...++...++++.+. . ..+..++++|+++. .
T Consensus 71 l~~~L~~~gV~~~~-~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~ 144 (317)
T 2nwh_A 71 VAEAARQAGVEDTP-FTFLDRRTPSYTAILERDGNLVIALADMDLYKLFTPRRLKVRAVREAIIASDFLLCDAN-----L 144 (317)
T ss_dssp HHHHHHHTTCEECC-EEETTSCCCEEEEEECTTSCEEEEEEECGGGGGCCHHHHTSHHHHHHHHHCSEEEEETT-----S
T ss_pred HHHHHHHcCCCCCC-cccCCCCCceEEEEEcCCCCEEEEEcchHHHhhCCHHHhhhhhhhhHhccCCEEEEeCC-----C
Confidence 99999999999999 5556779999999998889988765555666667776654 2 46788999999852 2
Q ss_pred hHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCccccccccccccc
Q 008168 359 MKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFV 438 (575)
Q Consensus 359 ~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~ 438 (575)
+.+.+..+++.++++|++|+|||+. .| ..+.+.++++++|+|++|..|+..|+|....+
T Consensus 145 ~~~~~~~~~~~a~~~g~~v~~Dp~~---~~-----~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~------------- 203 (317)
T 2nwh_A 145 PEDTLTALGLIARACEKPLAAIAIS---PA-----KAVKLKAALGDIDILFMNEAEARALTGETAEN------------- 203 (317)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECCS---HH-----HHGGGTTTGGGCSEEEEEHHHHHHHHC------------------
T ss_pred CHHHHHHHHHHHHhcCCeEEEeCCC---HH-----HHHHHHHHhhhCeEecCCHHHHHHHhCCChhH-------------
Confidence 4577888999999999999999863 22 12335678899999999999999999862111
Q ss_pred CCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCc-eeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCch
Q 008168 439 HYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDD-GAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKG 517 (575)
Q Consensus 439 ~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~-~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~ 517 (575)
..+.++.+.+.|++.||||+|++|+++++.++. .++++ ++++ ++|||||||+|+|||+++|++| +
T Consensus 204 --~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~---~~v~--~vdt~GAGDaf~a~~~~~l~~g-------~ 269 (317)
T 2nwh_A 204 --VRDWPNILRKAGLSGGVVTRGASEVVAFNGTEKAILHPP---LIRE--VKDVTGAGDAMASGYLAAIAEG-------K 269 (317)
T ss_dssp --CTTHHHHHHHTTCCCEEEEETTTEEEEECSSCEEEECCC---CSSS--CSCCCCSSHHHHHHHHHHHHTT-------C
T ss_pred --HHHHHHHHHHcCCCEEEEEECCCcEEEEcCCCceEEeCC---CCcc--ccCCCChhHHHHHHHHHHHHcC-------C
Confidence 124567777889999999999999999876542 33333 4554 8999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 518 YLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 518 sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
++.+|+++|+++|+++|++.|+..++|++++|++++..
T Consensus 270 ~~~~a~~~A~~~aa~~v~~~G~~~~~~~~~~v~~~~~~ 307 (317)
T 2nwh_A 270 TIREALRQGAAAAAITVQSSFATSQDLSKDSVEAMLGL 307 (317)
T ss_dssp CHHHHHHHHHHHHHHHHSSTTCCGGGCCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHhHhhh
Confidence 99999999999999999999999888999999995443
No 29
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=2.6e-41 Score=349.69 Aligned_cols=295 Identities=18% Similarity=0.250 Sum_probs=240.9
Q ss_pred CCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCC-eEEEEEeCCChHHHH
Q 008168 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGK-VAFMGKLGDDEYGQA 282 (575)
Q Consensus 204 ~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~-v~lig~VG~D~~G~~ 282 (575)
.++|+|+|++++|++... +++|.+ .+ ......+...+||+++|+|++|++||.+ +.++|.||+|.+|++
T Consensus 14 ~~~v~vvG~~~iD~~~~~---~~~p~~------g~-~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~i~~vG~D~~G~~ 83 (311)
T 1vm7_A 14 FLVISVVGSSNIDIVLKV---DHFTKP------GE-TQKAIEMNVFPGGKGANQAVTVAKIGEKGCRFVTCIGNDDYSDL 83 (311)
T ss_dssp CCCEEEECCCEEEEEEEC---SSCCCT------TC-EEECSEEEEEEECHHHHHHHHHHHHHSSCEEEEEEECSSHHHHH
T ss_pred cCCEEEECcceeeEEEec---ccCCCC------Cc-eEecCeeeecCCCHHHHHHHHHHHcCCCceEEEEEECCChHHHH
Confidence 368999999999999876 456532 11 2234678899999999999999999999 999999999999999
Q ss_pred HHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHH
Q 008168 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKST 362 (575)
Q Consensus 283 l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e~ 362 (575)
+++.|++.|| ++.+.++.+|+++++.++.+|++++. ...++...+++++++...+..++++|+++.. +.+.
T Consensus 84 l~~~L~~~gV---~v~~~~~~~T~~~~~~~~~~g~~~~~-~~~ga~~~l~~~~~~~~~~~~~~~v~~~~~~-----~~~~ 154 (311)
T 1vm7_A 84 LIENYEKLGI---TGYIRVSLPTGRAFIEVDKTGQNRII-IFPGANAELKKELIDWNTLSESDILLLQNEI-----PFET 154 (311)
T ss_dssp HHHHHHHTTE---EEEEECSSCCCEEEEEECTTSCEEEE-EECGGGGGCCGGGCCHHHHTTCSEEEECSSS-----CHHH
T ss_pred HHHHHHHCCC---EEEEcCCCCCeEEEEEECCCCCEEEE-EecCccccCCHHHhChhhcccCCEEEEeCCC-----CHHH
Confidence 9999999999 67776778999999999888998875 4457777888888776678899999998532 2334
Q ss_pred HHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcH
Q 008168 363 TLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEP 442 (575)
Q Consensus 363 ~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~ 442 (575)
+..+ +++.|++|+|||+....+ +..+++++|+|++|.+|+..|+|.......+ ..
T Consensus 155 ~~~~---a~~~~~~v~~Dp~~~~~~----------~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~------------~~ 209 (311)
T 1vm7_A 155 TLEC---AKRFNGIVIFDPAPAQGI----------NEEIFQYLDYLTPNEKEIEALSKDFFGEFLT------------VE 209 (311)
T ss_dssp HHHH---HHHCCSEEEECCCSCTTC----------CGGGGGGCSEECCBHHHHHHHHHHHHSCCCC------------HH
T ss_pred HHHH---HHHcCCEEEEeCcchhhh----------hHHHHhhCCEEeCCHHHHHHHhCCCCCChhH------------HH
Confidence 3333 778899999999853221 3467899999999999999998753211111 23
Q ss_pred HHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHH
Q 008168 443 EVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRT 522 (575)
Q Consensus 443 e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eA 522 (575)
+.++.|++.|++.||||+|.+|+++++++...++++ ++++ ++|||||||+|+|||+++|++| +++.+|
T Consensus 210 ~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~---~~v~--~vdttGAGDaf~a~~~~~l~~g-------~~~~~a 277 (311)
T 1vm7_A 210 KAAEKFLELGVKNVIVKLGDKGVLLVNKNEKKHFPT---FKVK--AVDTTAAGDVFNGAFAVALSEG-------KNPEEA 277 (311)
T ss_dssp HHHHHHHHTTCSEEEEECGGGCEEEEETTEEEEECC---CCCC--CSCCTTHHHHHHHHHHHHHHTT-------CCHHHH
T ss_pred HHHHHHHHcCCCEEEEEECCCCeEEEeCCceEEecC---CCcc--cCCCCccHHHHHHHHHHHHHCC-------CCHHHH
Confidence 667788888999999999999999988765444443 4454 7999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhcccccCCCCCCHHHHHHhhC
Q 008168 523 IKYAIDCGVRDQWSQARTLGYPPKEGMEEEVE 554 (575)
Q Consensus 523 l~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~ 554 (575)
+++|+++|+++|++.|+..++|++++|+++++
T Consensus 278 ~~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~ 309 (311)
T 1vm7_A 278 VIFGTAAAAISVTRLGAQSSIPAREEVEAFLK 309 (311)
T ss_dssp HHHHHHHHHHHTTSSSSGGGCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCccccCCCHHHHHHHHh
Confidence 99999999999999999888999999999875
No 30
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=100.00 E-value=1.8e-41 Score=347.31 Aligned_cols=285 Identities=15% Similarity=0.202 Sum_probs=227.2
Q ss_pred CCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008168 204 PPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 204 ~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l 283 (575)
+|+|+|||++++|+++. ...+||+++|+|++|++||.++.++|.||+|.+|+++
T Consensus 3 ~~~v~viG~~~~D~~p~--------------------------~~~~GG~~~N~A~~la~LG~~~~~~~~vG~D~~g~~~ 56 (296)
T 2qhp_A 3 NNIIVGMGEALWDVLPE--------------------------GKKIGGAPANFAYHVSQFGFDSRVVSAVGNDELGDEI 56 (296)
T ss_dssp CCEEEEESCCEEEEETT--------------------------EEEEECHHHHHHHHHHHTTCEEEEEEEEESSHHHHHH
T ss_pred cceEEEEchhheEecCC--------------------------CCCCCCHHHHHHHHHHHcCCCeeEEEEeCCChHHHHH
Confidence 36899999999999831 1568999999999999999999999999999999999
Q ss_pred HHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHH
Q 008168 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTT 363 (575)
Q Consensus 284 ~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e~~ 363 (575)
++.|++.|| .++.+.++.+|+++++.++.+|++++.+........+++.+.....++.+++||++++....+...+.+
T Consensus 57 ~~~l~~~gv--~~v~~~~~~~T~~~~v~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~ 134 (296)
T 2qhp_A 57 MEVFKEKQL--KNQIERVDYPTGTVQVTLDDEGVPCYEIKEGVAWDNIPFTDELKRLALNTRAVCFGSLAQRNEVSRATI 134 (296)
T ss_dssp HHHHHHTTC--CEEEEEESSCCEEEEEC------CCEEECSSCGGGCCCCCHHHHHHHHTEEEEEECSGGGSSHHHHHHH
T ss_pred HHHHHHcCC--CEEeecCCCCceEEEEEECCCCCEEEEEecCChhhhCCcchhhHhhhcCCCEEEECChHhcChHHHHHH
Confidence 999999999 778777678999999988878887776544444455654443345678899999988654444567788
Q ss_pred HHHHHHHhh-cCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcH
Q 008168 364 LQAIKISKQ-FGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEP 442 (575)
Q Consensus 364 ~~~l~~ak~-~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~ 442 (575)
..+++.+++ +|.+++|||+.+..+|. .+.+.++++++|+|++|..|+..|+|....+..+ ..
T Consensus 135 ~~~~~~a~~~~~~~v~~D~~~~~~~~~-----~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~~------------~~ 197 (296)
T 2qhp_A 135 NRFLDTMPDIDGQLKIFDINLRQDFYT-----KEVLRESFKRCNILKINDEELVTISRMFGYPGID------------LQ 197 (296)
T ss_dssp HHHHHHSCCTTSCEEEEECCCCTTCCC-----HHHHHHHHHHCSEEEEEHHHHHHHHHHTTCTTSC------------HH
T ss_pred HHHHHHHHhcCCCEEEEECcCCccccC-----HHHHHHHHHHCCEEECCHHHHHHHhcccCCCCCC------------HH
Confidence 889998887 69999999998877774 3456778899999999999999998753221111 23
Q ss_pred HHHHHHhhc-CCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHH
Q 008168 443 EVIAPLWHE-NLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVR 521 (575)
Q Consensus 443 e~~~~l~~~-g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~e 521 (575)
++++.+++. |++.||||+|.+|++++++++..++++ ++++ ++|||||||+|+|||+++|++| +++.+
T Consensus 198 ~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--~vdttGAGD~f~a~~~~~l~~g-------~~~~~ 265 (296)
T 2qhp_A 198 DKCWILLAKYNLKMLILTCGINGSYVFTPGVVSFQET---PKVP--VADTVGAGDSFTAAFCASILNG-------KSVPE 265 (296)
T ss_dssp HHHHHHHHHTTCSEEEEECGGGCEEEEETTEEEEECC---CCCC--CSCCTTHHHHHHHHHHHHHHHT-------CCHHH
T ss_pred HHHHHHHHhcCCCEEEEeecCCCeEEEECCeEEEeCC---CCCc--cccCCCchHHHHHHHHHHHHcC-------CCHHH
Confidence 566777775 999999999999999998765444444 4454 7999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHhcccccCCCCCC
Q 008168 522 TIKYAIDCGVRDQWSQARTLGYPP 545 (575)
Q Consensus 522 Al~~A~aaAA~~v~~~G~~~g~pt 545 (575)
|+++|+++|+++|++.|+...+|+
T Consensus 266 a~~~a~~~aa~~v~~~G~~~~~~~ 289 (296)
T 2qhp_A 266 AHKLAVEVSAYVCTQSGAMPELPV 289 (296)
T ss_dssp HHHHHHHHHHHHHTSSSSSCCCCH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCcH
Confidence 999999999999999999866543
No 31
>3uq6_A Adenosine kinase, putative; ribokinase, transferase; HET: ADN AMP; 2.30A {Schistosoma mansoni} PDB: 3uq9_A*
Probab=100.00 E-value=9e-42 Score=361.98 Aligned_cols=316 Identities=12% Similarity=0.146 Sum_probs=245.9
Q ss_pred cEEEECcceeeeeccCCCCCCCcc------------hhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCC---eEE
Q 008168 206 LVCCFGSAQHAFVPSGRPANRLID------------HEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGK---VAF 270 (575)
Q Consensus 206 ~VlviG~~~vDii~~~~~~~~lp~------------~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~---v~l 270 (575)
.|++||++++|++..+. +.|.. ++.+.++.+.+.........+||+++|+|++|++||.+ +.|
T Consensus 28 ~v~giGnalvDi~~~v~--d~~l~~~~l~kg~m~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~la~LG~~~~~~~f 105 (372)
T 3uq6_A 28 YVFGMGNPLLDIIVDAD--DFMYRKYNLKKDNIVLAEEKHMTIYDEIQKKKKLNYIAGGATLNTVKMIQWIIQKPFVCSY 105 (372)
T ss_dssp CEEEEECCEEEEEEECC--THHHHHTTCCTTEEEECCGGGTTHHHHHHTSSSCEEEECCHHHHHHHHHHHHHCSTTSEEE
T ss_pred eEEEECCceeeEEEEeC--HHHHHHcCCCCCceEEcCHHHHHHHHHHhccCCeEEeCCcHHHHHHHHHHHcCCCCCcEEE
Confidence 49999999999998763 11111 12333444444445667889999999999999999865 899
Q ss_pred EEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccc----hhhhccCcE
Q 008168 271 MGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN----IDVLKEAKM 346 (575)
Q Consensus 271 ig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~----~~~l~~ad~ 346 (575)
+|.||+|.+|+++++.|++.||++.++...++.+|+.++++++ +|+|++. .+.++...+++++++ ...+..+++
T Consensus 106 iG~VG~D~~G~~l~~~L~~~GV~~~~~~~~~~~~T~~~~v~~~-dgert~~-~~~ga~~~l~~~~i~~~~~~~~i~~a~~ 183 (372)
T 3uq6_A 106 VGCIGADIQGKYIKNDCSALDLVTEFQIAEEPLMTGKVAVLVS-EKLRSMV-TYLGAACDLSLAHIEQPHVWSLVEKAQV 183 (372)
T ss_dssp EEEECSSHHHHHHHHHHHHTTCEECCEECCTTCCEEEEEEEEC-SSCEEEE-EEEEGGGGCCHHHHTSHHHHHHHHHCSE
T ss_pred EeeecCCHHHHHHHHHHHHcCCCceeeeecCCCCceEEEEEcC-CCceEEE-EeccchhhcchhhhhhhhHHHHhhcccE
Confidence 9999999999999999999999999988888888999988885 7888875 567888888888775 256788999
Q ss_pred EEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCc
Q 008168 347 FYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEE 426 (575)
Q Consensus 347 v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~ 426 (575)
+|++|+.+ ....+.+.++++.++++|++++||++.+... ...++.+.++++++|||++|++|+..|++......
T Consensus 184 ~~~~g~~~--~~~~~~~~~~~~~a~~~g~~v~ldls~~~~~----~~~~~~l~~ll~~~Dil~~Ne~Ea~~l~~~~~~~~ 257 (372)
T 3uq6_A 184 YYIAGFVI--NTCYEGMLKIAKHSLENEKLFCFNLSAPFLS----QFNTKEVDEMISYSNIVFGNESEAEAYGEVHGLLE 257 (372)
T ss_dssp EEEEGGGH--HHHHHHHHHHHHHHHHTTCEEEEECCCHHHH----HHCHHHHHHHHTTCSEEEEEHHHHHHHHHHTTCCS
T ss_pred EEEecccc--cccHHHHHHHHHHHHHcCCeEeeccccchhh----hhhHHHHHHHhhcCCcccCCHHHHHHHhCCCCCch
Confidence 99999753 2457788999999999999999998743221 23466788899999999999999999987553322
Q ss_pred ccccccccccccCCcHHHHHHHhh-------cCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCC-cccCccChhHHH
Q 008168 427 FDTKNNARSKFVHYEPEVIAPLWH-------ENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTP-FTSDMSASGDGI 498 (575)
Q Consensus 427 ~d~~~~~~~~~~~~~~e~~~~l~~-------~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~-~vVDttGAGDaF 498 (575)
.+ ..+.++.+.. .+.+.||||+|++|++++..+.. .+..++.++++. .|||||||||+|
T Consensus 258 ~~------------~~~~a~~l~~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~-~~~~~~v~~~~~~~vVDTtGAGDaF 324 (372)
T 3uq6_A 258 DT------------VHATARYIADLPFADGKKRKRLVIITRGKNPLLYTDSSDS-EIHQFMVEQFKDDQIIDTNGAGDAF 324 (372)
T ss_dssp SH------------HHHHHHHHHHSCCTTCCCCCCEEEEEETTEEEEEEESSCS-SCEEECCCCCCGGGCCCCTTHHHHH
T ss_pred hH------------HHHHHHHHhhhhhhhhcCCceEEEEcCCCCceEEecCCCc-eeeeeeccCCCCCceeCCCchHHHH
Confidence 11 1233444432 36789999999999999987643 222222233322 389999999999
Q ss_pred HHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhh
Q 008168 499 VAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEV 553 (575)
Q Consensus 499 ~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l 553 (575)
+|||+++|++| +++++|+++|+++|+++|++.|+ .+|++++++-.|
T Consensus 325 ~agfl~~l~~g-------~~l~~a~~~a~~aAa~vv~~~Ga--~lp~r~~~~lkl 370 (372)
T 3uq6_A 325 AAGFIADYIRG-------KPMITSLHAAVKAAAYIICRSGF--SLGSRDSYSLKI 370 (372)
T ss_dssp HHHHHHHHTTT-------CCHHHHHHHHHHHHHHHHTSSSS--CCCCGGGCC---
T ss_pred HHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHcCCCC--CCCChhHHHHHh
Confidence 99999999999 99999999999999999999998 578888875443
No 32
>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A*
Probab=100.00 E-value=1.8e-41 Score=355.64 Aligned_cols=309 Identities=17% Similarity=0.202 Sum_probs=242.3
Q ss_pred CCcEEEECcceeeeeccCCC-----------CCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHc----CCC-
Q 008168 204 PPLVCCFGSAQHAFVPSGRP-----------ANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARL----GGK- 267 (575)
Q Consensus 204 ~~~VlviG~~~vDii~~~~~-----------~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarL----G~~- 267 (575)
..+|+++|++++|++..+.. ...+.+ +.|.+..+.+.....+...+||+++|+|++|++| |.+
T Consensus 7 ~~~v~~iG~~~lD~~~~v~~~~l~~~~l~~g~~~l~~-~~~~p~~~~~~~~~~~~~~~GG~~~N~a~~la~L~~~~G~~~ 85 (347)
T 3otx_A 7 PLRVYVQCNPLLDVSAHVSDEFLVKYGLERGTAILLS-ERQKGIFDDIEKMPNVRYVPGGSGLNVARVAQWMQQAYKGKF 85 (347)
T ss_dssp CCCEEEECCCEEEEEEECCHHHHHHTTCCTTCEEECC-GGGTTHHHHHHTSTTCEEEECCHHHHHHHHHHHTTGGGTTSS
T ss_pred CCcEEEECCceeeEEEecCHHHHHHcCCCCCceEEcC-HHHHHHHHHHhccCCeEEecCCHHHHHHHHHHHhcccCCCCe
Confidence 35799999999999987631 000111 2233333444455688899999999999999999 999
Q ss_pred eEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccch----hhhcc
Q 008168 268 VAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI----DVLKE 343 (575)
Q Consensus 268 v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~----~~l~~ 343 (575)
+.|+|.||+|.+|+++++.|++.||++.++. .++.+|++++++++ +|+|++. .+.++...++++++.. ..+..
T Consensus 86 ~~~ig~vG~D~~g~~~~~~l~~~GV~~~~~~-~~~~~T~~~~i~~~-~g~r~~~-~~~ga~~~~~~~~~~~~~~~~~~~~ 162 (347)
T 3otx_A 86 VTYVGCIADDRYGKVLKEAAEHEGIVMAVEH-TTKAGSGACAVCIT-GKERTLV-ADLGAANHLSSEHMRSPAVVRAMDE 162 (347)
T ss_dssp EEEECEECSSHHHHHHHHHHHHHTCEECCEE-CSSSCEEEEEEEEE-TTEEEEE-EEEEGGGGCCHHHHTSHHHHHHHHH
T ss_pred EEEEEEecCChHHHHHHHHHHHCCCceeccc-CCCCCCeEEEEEEE-CCceeee-echhhhhcCCHHHcCchhhHHHHhh
Confidence 9999999999999999999999999999985 56679999999998 7888764 5678887888887753 56889
Q ss_pred CcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCC
Q 008168 344 AKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKP 423 (575)
Q Consensus 344 ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~ 423 (575)
+++||++|+.+. ...+.+.++++.++++|+++++|+.. +.|. ..+++.+.++++++|+|++|++|++.|++...
T Consensus 163 ~~~~~~~g~~~~--~~~~~~~~~~~~a~~~g~~v~~d~~~--~~~~--~~~~~~l~~~l~~~dil~~N~~Ea~~l~~~~~ 236 (347)
T 3otx_A 163 SRIFYFSGFTLT--VDVNHVLQACRKAREVDGLFMINLSA--PFIM--QFFSAQLGEVLPYTDIIVANRHEAKEFANMMK 236 (347)
T ss_dssp CSEEEEEGGGGG--TCHHHHHHHHHHHHHTTCEEEEECCC--HHHH--HHCHHHHHHHGGGCSEEEEEHHHHHHHHHHHT
T ss_pred CCEEEEeeeecc--cCHHHHHHHHHHHHHhCCEEEeeCch--hhhH--HHHHHHHHHHHhhCCEEecCHHHHHHHhcccC
Confidence 999999997542 34678899999999999999999852 3332 33456788899999999999999999987532
Q ss_pred CCcccccccccccccCCcHHHHHHHh------hcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCC-cccCccChhH
Q 008168 424 TEEFDTKNNARSKFVHYEPEVIAPLW------HENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTP-FTSDMSASGD 496 (575)
Q Consensus 424 ~~~~d~~~~~~~~~~~~~~e~~~~l~------~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~-~vVDttGAGD 496 (575)
....+ ..++++.|. ..+++.||||+|++|+++++.++..++++. +++. .+||||||||
T Consensus 237 ~~~~~------------~~~~~~~l~~~~~~~~~g~~~vvvT~G~~Ga~~~~~~~~~~~~~~---~~~~~~vvDttGAGD 301 (347)
T 3otx_A 237 WDTDC------------VEEIARRAVSEVPYTGTKGRVVVFTRDIESTVLATKDGVETVPVP---QLDQDKVIDMNGAGD 301 (347)
T ss_dssp CCCCC------------HHHHHHHHHHTSCCCCSSCCEEEEEETTEEEEEEETTEEEEECCC---CCCGGGCCSSCCSHH
T ss_pred CCcCC------------HHHHHHHHHhhhccccCCCCEEEEEeCCCCeEEEECCeEEEEEec---ccCCCCCCCCCChHH
Confidence 11111 235566666 368999999999999999987755555543 3311 3899999999
Q ss_pred HHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcccccCCCCCCH
Q 008168 497 GIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPK 546 (575)
Q Consensus 497 aF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~ 546 (575)
+|+|||+++|++| +++++|+++|+++|+++|++.|+ .+|++
T Consensus 302 aF~ag~l~~l~~g-------~~l~~a~~~a~~~aa~~v~~~G~--~~p~~ 342 (347)
T 3otx_A 302 AFMGGFLSAYAVG-------KDLRRCCETGHYTAQEVIQRDGC--SFPEK 342 (347)
T ss_dssp HHHHHHHHHHTTT-------CCHHHHHHHHHHHHHHHHTCC------CCS
T ss_pred HHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHcccCC--CCCCC
Confidence 9999999999999 99999999999999999999997 56654
No 33
>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-41 Score=360.11 Aligned_cols=310 Identities=17% Similarity=0.185 Sum_probs=238.5
Q ss_pred CcEEEECcceeeeeccCCCC----------CCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHc---CCCeEEE
Q 008168 205 PLVCCFGSAQHAFVPSGRPA----------NRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARL---GGKVAFM 271 (575)
Q Consensus 205 ~~VlviG~~~vDii~~~~~~----------~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarL---G~~v~li 271 (575)
.+|+++|++++|++..+... .....++.+.+..+.......+...+||++.|+|+++++| |.++.++
T Consensus 24 ~~v~~iG~~~vD~~~~v~~~~l~~~~l~~g~~~l~~~~~~p~~~e~~~~~~~~~~~GG~~~N~a~~~~~L~~lG~~~~~i 103 (365)
T 3loo_A 24 GMLVGLGNPLLDISAVVEKDLLNKYDMQPNNAILAEEKHMPMYQELIEKYQAEYIAGGSVQNSLRVAQWILQRPRTAIFF 103 (365)
T ss_dssp TSEEEECCCEEEEEEECCHHHHHHTTCCSSEEEECCGGGTHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHTCTTSEEEE
T ss_pred ccEEEECCCeEeEEEecCHHHHHHcCCCCCCceechhHHHHHHHHHhhcCCeEEecCCHHHHHHHHHHHhhcCCCcEEEE
Confidence 46999999999999876310 0000111122222222222357789999999999999987 9999999
Q ss_pred EEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccch----hhhccCcEE
Q 008168 272 GKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI----DVLKEAKMF 347 (575)
Q Consensus 272 g~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~----~~l~~ad~v 347 (575)
|.||+|.+|+++++.|++.||++.++.. ++.+|++++++++ +|++++. .+.++...++++++.. ..+..+++|
T Consensus 104 g~vG~D~~g~~~~~~l~~~GV~~~~~~~-~~~~Tg~~~i~~~-~~~r~~~-~~~ga~~~~~~~~~~~~~~~~~~~~~~~v 180 (365)
T 3loo_A 104 GCVGQDEYARILEERATSNGVNVQYQRS-ATSPTGTCAVLVT-GTQRSLC-ANLAAANDFTPEHLRSDGNRAYLQGAQFF 180 (365)
T ss_dssp EEEESBHHHHHHHHHHHHHTCEEEEEEE-SSSCCEEEEEEEE-TTEEEEE-EECGGGGGCCGGGGGSHHHHHHHHHCSEE
T ss_pred EEecCCchHHHHHHHHHHCCCceecccc-CCCCCeEEEEEEE-CCceEEE-eccchHhhCCHhHcCchhhHHHHhhCCEE
Confidence 9999999999999999999999999887 6779999999998 6777664 5678888899888763 567899999
Q ss_pred EEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcc
Q 008168 348 YFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEF 427 (575)
Q Consensus 348 ~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~ 427 (575)
|++|+.+. ...+.+.++++.++++|+++++|+.. ++|. ...++.+.++++++|+|++|+.|++.|++.......
T Consensus 181 ~i~G~~~~--~~~~~~~~~~~~a~~~g~~v~~d~~~--~~~~--~~~~~~l~~~l~~~dil~~N~~Ea~~l~g~~~~~~~ 254 (365)
T 3loo_A 181 YVSGFFFT--VSFESALSVAKEAAATGRMFMMNLSA--PFVP--QFYKNNLEEIFPYVDVLFGNETEAIALAKEFNYGTE 254 (365)
T ss_dssp EEEGGGHH--HHHHHHHHHHHHHHHTTCEEEEECCS--THHH--HHCHHHHHHHGGGCSEEEEEHHHHHHHHHHTTCCCC
T ss_pred EEeeeecc--CCHHHHHHHHHHHHHcCCEEEEECCc--hhhh--HHHHHHHHHHHHhCCEEecCHHHHHHHhcccCCCCC
Confidence 99997542 35678899999999999999999752 3442 334677888999999999999999999875432111
Q ss_pred cccccccccccCCcHHHHHHHhhc------CCCEEEEEcCCCcEEEE--EcCCceeEecccCCCCCC-cccCccChhHHH
Q 008168 428 DTKNNARSKFVHYEPEVIAPLWHE------NLKVLFVTNGTSKVHYY--TKEDDGAVLGTEDAPLTP-FTSDMSASGDGI 498 (575)
Q Consensus 428 d~~~~~~~~~~~~~~e~~~~l~~~------g~k~VVVT~G~~Ga~v~--~~~~~~~v~a~~~~~v~~-~vVDttGAGDaF 498 (575)
+ ..++++.|... +++.||||+|++|++++ ..+...+++++ +++. .+||||||||+|
T Consensus 255 ~------------~~~~~~~l~~~~~~~~~g~~~vvvT~G~~Ga~~~~~~~~~~~~~~~~---~v~~~~vvDttGAGDaF 319 (365)
T 3loo_A 255 D------------LREIGKRIAALPKENGKRKRIVIITQGSDPVLLIEAGTDNVREFPVQ---KLAPEQMVDTNGAGDAF 319 (365)
T ss_dssp C------------HHHHHHHHHTSCCSSTTSCCEEEEEETTEEEEEEETTCSCCEEECCC---CCC------CTTHHHHH
T ss_pred C------------HHHHHHHHHhhhhhccCCCCEEEEEeCCCCEEEEEecCCeEEEEecc---ccCCCCccCCCChHHHH
Confidence 1 23566667654 89999999999999999 55555556553 3411 389999999999
Q ss_pred HHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcccccCCCCCCHH
Q 008168 499 VAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKE 547 (575)
Q Consensus 499 ~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~e 547 (575)
+|||+++|++| +++++|+++|+++|+++|++.|+. +|+..
T Consensus 320 ~agfl~~l~~g-------~~l~~a~~~a~~~Aa~~v~~~G~~--~p~~~ 359 (365)
T 3loo_A 320 VGGFLAQLLQS-------RTVDVCIKCGIWAAREIIQRSGCT--FEGEP 359 (365)
T ss_dssp HHHHHHHHHTT-------CCHHHHHHHHHHHHHHHHHHGGGG--GGSCC
T ss_pred HHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHcCCCCC--CCCCc
Confidence 99999999999 999999999999999999999995 45443
No 34
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A*
Probab=100.00 E-value=8.4e-41 Score=348.25 Aligned_cols=297 Identities=18% Similarity=0.183 Sum_probs=236.4
Q ss_pred CcEEEECcceeeeeccCCCC-------CCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCC-
Q 008168 205 PLVCCFGSAQHAFVPSGRPA-------NRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGD- 276 (575)
Q Consensus 205 ~~VlviG~~~vDii~~~~~~-------~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~- 276 (575)
|+|+|+|++++|++..+... +++|. ..+.+ ....+...+||+++|+|++|++||.++.++|.||+
T Consensus 1 m~i~v~G~~~iD~~~~~~~~~~~~~~~~~~p~------~~~~~-~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~~ 73 (326)
T 3b1n_A 1 MATLICGSIAYDNIMTFEGRFREHILPDQVHL------INLSF-LVPTMRREFGGCAGNIAYALNLLGGDARMMGTLGAV 73 (326)
T ss_dssp -CEEEESCCEEEEEEECSSCGGGGCCTTSSSS------CEEEE-ECCSCCCEEECHHHHHHHHHHHTTCCEEEEEEEETT
T ss_pred CcEEEECcceEEEEEecchhhhhhccccccCC------CCcce-ecccceeccCCHHHHHHHHHHHcCCCeeEEEEECCc
Confidence 47999999999999865110 12331 11111 12456678999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccc
Q 008168 277 DEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLE 356 (575)
Q Consensus 277 D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~ 356 (575)
| +|+ +++.|++.||+++++.+.++.+|+++++.++.+|++.+.+. +++...++++++.. +..++++|+++.
T Consensus 74 D-~g~-i~~~L~~~gVd~~~v~~~~~~~T~~~~v~~~~~g~~~~~~~-~ga~~~~~~~~~~~--~~~~~~v~~~~~---- 144 (326)
T 3b1n_A 74 D-AQP-YLDRMDALGLSREYVRVLPDTYSAQAMITTDLDNNQITAFH-PGAMMQSHVNHAGE--AKDIKLAIVGPD---- 144 (326)
T ss_dssp T-CHH-HHHHHHHHTCEEEEEEEETTCCCEEEEEEECTTCCCEEEEE-CGGGGGGGGSCGGG--CCSCSEEEECSC----
T ss_pred C-HHH-HHHHHHHcCCcccceEEcCCCCceEEEEEECCCCceEEEEe-cChhhhcChhhccc--ccCCCEEEECCc----
Confidence 9 899 99999999999999988878899999999988888766433 56665666555532 278999999753
Q ss_pred cchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCccccccccccc
Q 008168 357 RNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSK 436 (575)
Q Consensus 357 ~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~ 436 (575)
..+.+.++++.+++.|++|+|||+.+..+|. .+.+.++++++|+|++|++|+..|+|.....
T Consensus 145 --~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~-----~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~----------- 206 (326)
T 3b1n_A 145 --GFQGMVQHTEELAQAGVPFIFDPGQGLPLFD-----GATLRRSIELATYIAVNDYEAKLVCDKTGWS----------- 206 (326)
T ss_dssp --CHHHHHHHHHHHHHHTCCEEECCGGGGGGCC-----HHHHHHHHHHCSEEEEEHHHHHHHHHHHCCC-----------
T ss_pred --cHHHHHHHHHHHHHCCCEEEEeCchhhhhcc-----HHHHHHHHHhCCEEecCHHHHHHHhCCCCCC-----------
Confidence 3467788899999999999999987666663 3456788899999999999999998743211
Q ss_pred ccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCc
Q 008168 437 FVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDK 516 (575)
Q Consensus 437 ~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~ 516 (575)
.+ .+.+ +++.||||+|++|+++++++...++++ +++.. ++|||||||+|+|||+++|++|
T Consensus 207 -----~~---~l~~-~~~~vvvT~G~~Ga~~~~~~~~~~~~~---~~v~~-vvDttGAGDaF~ag~l~~l~~g------- 266 (326)
T 3b1n_A 207 -----ED---EIAS-RVQALIITRGEHGATIRHRDGTEQIPA---VRAER-VIDPTGCGDAFRGGLLYGIEHG------- 266 (326)
T ss_dssp -----HH---HHHT-TSSEEEEECGGGCEEEEETTEEEEECC---CCCSC-CCCCTTHHHHHHHHHHHHHHTT-------
T ss_pred -----HH---HHHh-cCCEEEEecCCCceEEEECCcEEEeCC---CCCCC-CCCCCCchHHHHHHHHHHHHcC-------
Confidence 11 2333 388999999999999998765444444 34432 6899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 517 GYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 517 ~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
+++++|+++|+++|+++|++.|+..++|+++++++++++
T Consensus 267 ~~~~~a~~~A~~~aa~~v~~~G~~~~~~~~~ev~~~l~~ 305 (326)
T 3b1n_A 267 FDWATAGRLASLMGALKIAHQGPQTYAPTRAEIDARFET 305 (326)
T ss_dssp CCHHHHHHHHHHHHHHHHTSSSTTCCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999998889999999998854
No 35
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=3e-40 Score=346.89 Aligned_cols=320 Identities=17% Similarity=0.194 Sum_probs=246.6
Q ss_pred CCCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008168 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 202 ~~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~ 281 (575)
.-.|+|++||+.+.++...+. ..+.....+...+||+++|+|++|++||.++.++|.||+|.+|+
T Consensus 10 ~~~~~~~~~ge~l~~~~~~~~---------------~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~ 74 (351)
T 2afb_A 10 HHHMKVVTFGEIMLRLSPPDH---------------KRIFQTDSFDVTYGGAEANVAAFLAQMGLDAYFVTKLPNNPLGD 74 (351)
T ss_dssp CCCCEEEEESCCEEEEECSTT---------------CCGGGCSEEEEEEECHHHHHHHHHHHTTSEEEEEEEECSSHHHH
T ss_pred cccceEEEechhhheecCCCC---------------ccccccceeeEecCChHHHHHHHHHHcCCCeEEEEEeCCCHHHH
Confidence 345799999999999875431 01112467889999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeE-EEE-e-cCCccccCCccccchh-hhccCcEEEEecccc-cc
Q 008168 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLR-MTC-V-KPCAEDALTKSEINID-VLKEAKMFYFSTHSM-LE 356 (575)
Q Consensus 282 ~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~-~~~-~-~~ga~~~lt~~~i~~~-~l~~ad~v~~sg~~l-~~ 356 (575)
++++.|++.||++.++.. .+.+|+++++.++. |.+. ++. . ...+...++++++... .+..+++||++|+.. ++
T Consensus 75 ~i~~~L~~~gv~~~~v~~-~~~~t~~~~v~~~~-~~r~~~v~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 152 (351)
T 2afb_A 75 AAAGHLRKFGVKTDYIAR-GGNRIGIYFLEIGA-SQRPSKVVYDRAHSAISEAKREDFDWEKILDGARWFHFSGITPPLG 152 (351)
T ss_dssp HHHHHHHHTTCBCTTEEE-CSSCCCEEEEECCB-TTBCCEEEEECTTCTTTTCCGGGCCHHHHTTTEEEEEEETTSGGGS
T ss_pred HHHHHHHHcCCcceeEEE-CCCcceEEEEEecC-CCCcceEEEeCCCChhhhCChhhCCHHHhhcCCCEEEEeCcccccC
Confidence 999999999999999886 46789998887654 4443 222 2 2234456777777643 468899999998643 34
Q ss_pred cchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCccccccccccc
Q 008168 357 RNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSK 436 (575)
Q Consensus 357 ~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~ 436 (575)
+...+.+.++++.+++.|++|+|||+.+..+|. .....+.+.++++++|+|++|..|+..|+|...... +......+
T Consensus 153 ~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~-~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~-~~~~~~~~- 229 (351)
T 2afb_A 153 KELPLILEDALKVANEKGVTVSCDLNYRARLWT-KEEAQKVMIPFMEYVDVLIANEEDIEKVLGISVEGL-DLKTGKLN- 229 (351)
T ss_dssp TTHHHHHHHHHHHHHHHTCEEEEECCCCTTTCC-HHHHHHHHHHHGGGCSEEEECHHHHHHHHCCCCSCC--------C-
T ss_pred hhHHHHHHHHHHHHHHcCCEEEEeCCCchhcCC-hHHHHHHHHHHHhhCCEEEecHHHHHHHhCCCcccc-cccccccc-
Confidence 456688899999999999999999998877885 234557788899999999999999999998754200 00000000
Q ss_pred ccCCcHHHHHHHhhc-CCCEEEEEcCCCcE--------EEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHH
Q 008168 437 FVHYEPEVIAPLWHE-NLKVLFVTNGTSKV--------HYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLT 507 (575)
Q Consensus 437 ~~~~~~e~~~~l~~~-g~k~VVVT~G~~Ga--------~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~ 507 (575)
.+...++++.|+.. |++.||||+|.+|+ +++..+...++++ ++++ ++|||||||+|+|||+++|+
T Consensus 230 -~~~~~~~~~~l~~~~g~~~vvvT~G~~G~~~~~~~g~~~~~~~~~~~~~~---~~v~--vvdttGAGDaF~ag~~~~l~ 303 (351)
T 2afb_A 230 -REAYAKIAEEVTRKYNFKTVGITLRESISATVNYWSVMVFENGQPHFSNR---YEIH--IVDRVGAGDSFAGALIYGSL 303 (351)
T ss_dssp -HHHHHHHHHHHHHHHCCSEEEEEEEECSCSSEEEEEEEEEETTEEEECCC---EEEE--CSCCTTHHHHHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHHcCCCEEEEEeCCcCccccccceeEEEeCCcEEEcCC---CCCc--cCCCCCchHHHHHHHHHHHH
Confidence 00012456667664 99999999999975 6676543333333 3444 79999999999999999999
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 508 VQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 508 ~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
+| +++++|+++|+++|+++|++.|+.. +|++++|+++++.
T Consensus 304 ~g-------~~l~~a~~~A~~~aa~~v~~~G~~~-~~~~~ev~~~l~~ 343 (351)
T 2afb_A 304 MG-------FDSQKKAEFAAAASCLKHTIPGDFV-VLSIEEIEKLASG 343 (351)
T ss_dssp HT-------CCHHHHHHHHHHHHHHHTTSSSSSC-CCCHHHHHHHHTC
T ss_pred cC-------CCHHHHHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHhc
Confidence 99 9999999999999999999999974 8999999999975
No 36
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A
Probab=100.00 E-value=3.3e-39 Score=334.50 Aligned_cols=303 Identities=14% Similarity=0.077 Sum_probs=239.3
Q ss_pred CcEEEECcceeee-eccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHH
Q 008168 205 PLVCCFGSAQHAF-VPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 205 ~~VlviG~~~vDi-i~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l 283 (575)
|-+.|.+++++|+ +.... ++.. ........+...+||+++|+|++|++||.++.++|.||+| +|+++
T Consensus 3 mi~tvt~np~iD~~~~~v~---~~~~--------g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~d-~g~~i 70 (320)
T 3ie7_A 3 LIYTITLNPAIDRLLFIRG---ELEK--------RKTNRVIKTEFDCGGKGLHVSGVLSKFGIKNEALGIAGSD-NLDKL 70 (320)
T ss_dssp CEEEEESSCEEEEEEEESS---SCCT--------TSCCCCSEEEEEEESHHHHHHHHHHHHTCCEEEEEEEEST-THHHH
T ss_pred eEEEEecchHHeeeEEEcC---CccC--------CCeeEeceeeecCCchHHHHHHHHHHcCCCeEEEEEecCc-hHHHH
Confidence 4677888999999 87762 3321 1233457788999999999999999999999999999998 99999
Q ss_pred HHHHHhCCCccceEEEcCCCCceEEEEEEcCCCC--eEEEEecCCccccCCccccch------hhhccCcEEEEeccccc
Q 008168 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGR--LRMTCVKPCAEDALTKSEINI------DVLKEAKMFYFSTHSML 355 (575)
Q Consensus 284 ~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ge--r~~~~~~~ga~~~lt~~~i~~------~~l~~ad~v~~sg~~l~ 355 (575)
++.|++.||++.++...++ +|+.++++++ +|+ ++++ ...++ .+++++++. ..+..+++||++|+..
T Consensus 71 ~~~l~~~gv~~~~v~~~~~-~t~~~~~~~~-~g~~~~~~~-~~~g~--~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~- 144 (320)
T 3ie7_A 71 YAILKEKHINHDFLVEAGT-STRECFVVLS-DDTNGSTMI-PEAGF--TVSQTNKDNLLKQIAKKVKKEDMVVIAGSPP- 144 (320)
T ss_dssp HHHHHHTTCCBCCEEETTC-CCEEEEEEEE-TTCSCCEEE-ECCCC--CCCHHHHHHHHHHHHHHCCTTCEEEEESCCC-
T ss_pred HHHHHHcCCceEEEEecCC-CCceEEEEEE-CCCceeEEE-eCCCC--CCCHHHHHHHHHHHHHHhcCCCEEEEeCCCC-
Confidence 9999999999999855555 8999999888 777 7654 44443 466665542 4578899999988632
Q ss_pred ccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhc-cCeEeecCHHHHHHhhCCCCCCccccccccc
Q 008168 356 ERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT-LADVIEVTKQELEFLCGIKPTEEFDTKNNAR 434 (575)
Q Consensus 356 ~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~-~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~ 434 (575)
.....+.+.++++.+++.|++|+|||+. ..+..++. ++|+|++|.+|+..|+|.....
T Consensus 145 ~~~~~~~~~~~~~~a~~~g~~v~~D~~~------------~~l~~~l~~~~dil~~N~~E~~~l~g~~~~~--------- 203 (320)
T 3ie7_A 145 PHYTLSDFKELLRTVKATGAFLGCDNSG------------EYLNLAVEMGVDFIKPNEDEVIAILDEKTNS--------- 203 (320)
T ss_dssp TTCCHHHHHHHHHHHHHHTCEEEEECCH------------HHHHHHHHHCCSEECCBTTGGGGGSCTTCCC---------
T ss_pred CCCCHHHHHHHHHHHHhcCCEEEEECCh------------HHHHHHHhcCCeEEeeCHHHHHHHhCCCcCC---------
Confidence 2345678899999999999999999852 12344444 9999999999999999875431
Q ss_pred ccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCC
Q 008168 435 SKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLIT 514 (575)
Q Consensus 435 ~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~ 514 (575)
..+.+.++... ++.||||+|++|++++++++..++++ ++++ ++|||||||+|+|||+++|++|
T Consensus 204 ------~~~~~~~~~~~-~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvdttGAGDaF~ag~~~~l~~g----- 266 (320)
T 3ie7_A 204 ------LEENIRTLAEK-IPYLVVSLGAKGSICAHNGKLYQVIP---PKVQ--ERNDTGAGDVFVGAFIAGLAMN----- 266 (320)
T ss_dssp ------HHHHHHHHTTT-CSEEEEECGGGCEEEEETTEEEEEEC---CCCC--CSCCTTHHHHHHHHHHHHHHTT-----
T ss_pred ------CHHHHHHHHhh-CCEEEEEcCCCceEEEeCCcEEEEeC---CccC--CCCCcCchHHHHHHHHHHHHcC-----
Confidence 12444555555 89999999999999998876555554 4454 7999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCCCCCCcccccccccc
Q 008168 515 DKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEPDPYGIRSMTEKEYR 569 (575)
Q Consensus 515 d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~~~~~~~~~~~~~~~ 569 (575)
+++++|+++|+++|+++|++.|+ ++|++++|++++++. .++.+++++-+
T Consensus 267 --~~~~~a~~~A~a~aa~~v~~~G~--~~~~~~ev~~~~~~~--~i~~~~~~~~~ 315 (320)
T 3ie7_A 267 --MPITETLKVATGCSASKVMQQDS--SSFDLEAAGKLKNQV--SIIQLEEREGH 315 (320)
T ss_dssp --CCHHHHHHHHHHHHHHHHTSSSS--SCCCHHHHHHHGGGC--EEEECC-----
T ss_pred --CCHHHHHHHHHHHHHHHHhCcCC--CCCCHHHHHHHhhCe--EEEEccccccc
Confidence 99999999999999999999995 789999999999775 45666554433
No 37
>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A*
Probab=100.00 E-value=5.1e-39 Score=331.27 Aligned_cols=296 Identities=16% Similarity=0.151 Sum_probs=234.2
Q ss_pred CCcEEEE-CcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008168 204 PPLVCCF-GSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 204 ~~~Vlvi-G~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~ 282 (575)
|+.|+++ +++++|++..+. ++.. ........+...+||+++|+|++|++||.++.++|.||+| +|++
T Consensus 1 m~~i~~v~~n~~~D~~~~v~---~~~~--------g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~d-~g~~ 68 (309)
T 3umo_A 1 MVRIYTLTLAPSLDSATITP---QIYP--------EGKLRCTAPVFEPGGGGINVARAIAHLGGSATAIFPAGGA-TGEH 68 (309)
T ss_dssp CCCEEEECSSCEEEEEEEES---CCCS--------SSEEECCCCEEEEESHHHHHHHHHHHTTCCEEEEEEECHH-HHHH
T ss_pred CCcEEEEecchhheEEEEcC---cccC--------CCeEEeceeeecCCchHHHHHHHHHHcCCCeEEEEEecCc-hHHH
Confidence 5567766 579999998873 3421 1223457888999999999999999999999999999998 9999
Q ss_pred HHHHHHhCCCccceEEEcCCCCceEEEEEEc-CCCCeEEEEecCCccccCCccccch--h---hhccCcEEEEecccccc
Q 008168 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIG-KRGRLRMTCVKPCAEDALTKSEINI--D---VLKEAKMFYFSTHSMLE 356 (575)
Q Consensus 283 l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd-~~Ger~~~~~~~ga~~~lt~~~i~~--~---~l~~ad~v~~sg~~l~~ 356 (575)
+++.|++.||+++++.+... |+.++++++ .+|+++++ ...++ .+++++++. . .+..++++|++|+.. .
T Consensus 69 i~~~l~~~gv~~~~v~~~~~--t~~~~~~~~~~~g~~~~~-~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~ 142 (309)
T 3umo_A 69 LVSLLADENVPVATVEAKDW--TRQNLHVHVEASGEQYRF-VMPGA--ALNEDEFRQLEEQVLEIESGAILVISGSLP-P 142 (309)
T ss_dssp HHHHHHHTTCCEEEEECSSC--CCCCEEEEETTTCCEEEE-ECCCC--CCCHHHHHHHHHHHTTSCTTCEEEEESCCC-T
T ss_pred HHHHHHHcCCceEEEEecCC--CeeEEEEEECCCCcEEEE-EcCCC--CCCHHHHHHHHHHHHhcCCCCEEEEEccCC-C
Confidence 99999999999999876543 444444443 47777654 55555 366665531 1 135788999998632 2
Q ss_pred cchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhcc--CeEeecCHHHHHHhhCCCCCCccccccccc
Q 008168 357 RNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTL--ADVIEVTKQELEFLCGIKPTEEFDTKNNAR 434 (575)
Q Consensus 357 ~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~--aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~ 434 (575)
....+.+.++++.++++|++|+|||+ ...+.+++++ +|+|++|..|+..|+|....+..+
T Consensus 143 ~~~~~~~~~~~~~a~~~~~~v~~D~~------------~~~l~~~l~~~~~dil~~N~~E~~~l~g~~~~~~~~------ 204 (309)
T 3umo_A 143 GVKLEKLTQLISAAQKQGIRCIVDSS------------GEALSAALAIGNIELVKPNQKELSALVNRELTQPDD------ 204 (309)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEECC------------HHHHHHHTSSCCBSEECCBHHHHHHHHTSCCCSTTH------
T ss_pred CCCHHHHHHHHHHHHhcCCEEEEECC------------cHHHHHHhccCCCeEEEeCHHHHHHHhCCCCCCHHH------
Confidence 24567889999999999999999985 1235677777 499999999999999976433211
Q ss_pred ccccCCcHHHHHHHhhcCC-CEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCC
Q 008168 435 SKFVHYEPEVIAPLWHENL-KVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLI 513 (575)
Q Consensus 435 ~~~~~~~~e~~~~l~~~g~-k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~ 513 (575)
..+.++.|++.+. +.||||+|.+|++++++++..++++ ++++ ++|||||||+|+|||+++|++|
T Consensus 205 ------~~~~~~~l~~~g~~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvdttGAGD~f~a~~~~~l~~g---- 269 (309)
T 3umo_A 205 ------VRKAAQEIVNSGKAKRVVVSLGPQGALGVDSENCIQVVP---PPVK--SQSTVGAGDSMVGAMTLKLAEN---- 269 (309)
T ss_dssp ------HHHHHHHHHHTTSBSCEEEECGGGCEEEECSSCEEEECC---CSCC--CSCCTTHHHHHHHHHHHHHHTT----
T ss_pred ------HHHHHHHHHHcCCCcEEEEEcCcccEEEEECCcEEEEeC---CCcC--CCCCcChHHHHHHHHHHHHHcC----
Confidence 2366778888886 8999999999999998877666654 3454 8999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 514 TDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 514 ~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
+++.+|+++|+++|+++|++.|+. +|++++|++++++
T Consensus 270 ---~~~~~a~~~A~~~aa~~v~~~G~~--~~~~~ev~~~l~~ 306 (309)
T 3umo_A 270 ---ASLEEMVRFGVAAGSAATLNQGTR--LCSHDDTQKIYAY 306 (309)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTSSTTC--CCCHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHhcCCCCC--CCCHHHHHHHHHH
Confidence 999999999999999999999994 8999999999854
No 38
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Probab=100.00 E-value=3.5e-39 Score=336.48 Aligned_cols=297 Identities=15% Similarity=0.093 Sum_probs=233.8
Q ss_pred CCCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008168 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 202 ~~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~ 281 (575)
..+|.++|+|++++|++.... ++.. .+ ......+...+||+++|+|++|++||.++.++|.||+ .+|+
T Consensus 18 ~~~Mi~~v~G~~~~D~~~~~~---~~~~-------g~-~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~-~~G~ 85 (330)
T 2jg1_A 18 GSHMILTLTLNPSVDISYPLT---ALKL-------DD-VNRVQEVSKTAGGKGLNVTRVLAQVGEPVLASGFIGG-ELGQ 85 (330)
T ss_dssp SSCCEEEEESSCEEEEEEEES---CCCT-------TS-EEEESCCEEEEECHHHHHHHHHHHHTCCEEEEEEEEH-HHHH
T ss_pred CCcEEEEEecchhheEEEecC---CccC-------Cc-eEEeceEEEcCCchHHHHHHHHHHhCCCeEEEEEecc-hhHH
Confidence 455778899999999998763 3321 11 1123567889999999999999999999999999996 6999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccch------hhhccCcEEEEeccccc
Q 008168 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI------DVLKEAKMFYFSTHSML 355 (575)
Q Consensus 282 ~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~------~~l~~ad~v~~sg~~l~ 355 (575)
++++.|++.||+++++.+.+ .|++++++++.+ ++ +.+...++ .+++++++. ..+..+++||++|+...
T Consensus 86 ~l~~~L~~~gV~~~~v~~~~--~t~~~~~~v~~~-~~-~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~ 159 (330)
T 2jg1_A 86 FIAKKLDHADIKHAFYNIKG--ETRNCIAILHEG-QQ-TEILEQGP--EIDNQEAAGFIKHFEQMMEKVEAVAISGSLPK 159 (330)
T ss_dssp HHHHHHHHTTCEECCEEESS--CCEEEEEEEETT-EE-EEEEECCC--BCCHHHHHHHHHHHHHHGGGCSEEEEESCCCB
T ss_pred HHHHHHHHCCCceeEEEccC--CCeeEEEEEeCC-Cc-EEEECCCC--CCCHHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 99999999999999988764 377777777765 44 44454554 366555431 23678999999885432
Q ss_pred ccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhc---cCeEeecCHHHHHHhhCCCCC-Ccccccc
Q 008168 356 ERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT---LADVIEVTKQELEFLCGIKPT-EEFDTKN 431 (575)
Q Consensus 356 ~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~---~aDIl~~N~~Ea~~L~g~~~~-~~~d~~~ 431 (575)
....+.+.++++.++++|++|+|||+. ..+.++++ ++|+|++|++|+..|+|.... +..+
T Consensus 160 -~~~~~~~~~~~~~a~~~g~~v~~D~~~------------~~l~~~l~~~~~~dil~~N~~E~~~l~g~~~~~~~~~--- 223 (330)
T 2jg1_A 160 -GLNQDYYAQIIERCQNKGVPVILDCSG------------ATLQTVLENPYKPTVIKPNISELYQLLNQPLDESLES--- 223 (330)
T ss_dssp -TSCTTHHHHHHHHHHTTTCCEEEECCH------------HHHHHHHTSSSCCSEECCBHHHHHHHTTSCCCCCHHH---
T ss_pred -CCCHHHHHHHHHHHHHCCCEEEEECCc------------HHHHHHHhccCCceEEEeCHHHHHHHhCCCCCCCHHH---
Confidence 234567888999999999999999862 13455665 899999999999999986532 1111
Q ss_pred cccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCC
Q 008168 432 NARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPH 511 (575)
Q Consensus 432 ~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~ 511 (575)
..++++.|++.|++.||||+|++|++++++++..++++ ++++ ++|||||||+|+|||+++|++|
T Consensus 224 ---------~~~~~~~l~~~g~~~VvvT~G~~Ga~~~~~~~~~~~~~---~~v~--vvDttGAGDaF~ag~~~~l~~g-- 287 (330)
T 2jg1_A 224 ---------LKQAVSQPLFEGIEWIIVSLGAQGAFAKHNHTFYRVNI---PTIS--VLNPVGSGDSTVAGITSAILNH-- 287 (330)
T ss_dssp ---------HHHHHHSGGGTTCSEEEEECGGGCEEEEETTEEEEEEC---CCCC--CSCCTTHHHHHHHHHHHHHHTT--
T ss_pred ---------HHHHHHHHHHcCCCEEEEeecCCceEEEeCCCEEEEeC---CCcc--ccCCCcHHHHHHHHHHHHHHcC--
Confidence 13556777788999999999999999998765445554 4454 8999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 512 LITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 512 ~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
+++++|+++|+++|+++|++.|+ .+|+++++++++.+
T Consensus 288 -----~~l~~al~~A~a~aa~~v~~~G~--~~~~~~ev~~~~~~ 324 (330)
T 2jg1_A 288 -----ENDHDLLKKANTLGMLNAQEAQT--GYVNLNNYDDLFNQ 324 (330)
T ss_dssp -----CCHHHHHHHHHHHHHHHHTSSSS--SCCCGGGHHHHHTT
T ss_pred -----CCHHHHHHHHHHHHHHHhcCcCC--CCCCHHHHHHHHhc
Confidence 99999999999999999999998 47999999999864
No 39
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A*
Probab=100.00 E-value=1.1e-39 Score=341.50 Aligned_cols=310 Identities=15% Similarity=0.171 Sum_probs=238.9
Q ss_pred CCCcEEEECcceeeeeccCCCCCCC------cch------hhhhhhcccccCCCceEEecCChHHHHHHHHHHcC----C
Q 008168 203 WPPLVCCFGSAQHAFVPSGRPANRL------IDH------EIHERMKDALWAPEKFIRSPGGCTGSAAIALARLG----G 266 (575)
Q Consensus 203 ~~~~VlviG~~~vDii~~~~~~~~l------p~~------e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG----~ 266 (575)
..++|+|+|++++|++..+.. .+ ... +.+.+..+.+.....+...+||+++|+|++|++|| .
T Consensus 5 ~~~~v~viG~~~~D~~~~~~~--~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~la~lgg~~~~ 82 (345)
T 1bx4_A 5 RENILFGMGNPLLDISAVVDK--DFLDKYSLKPNDQILAEDKHKELFDELVKKFKVEYHAGGSTQNSIKVAQWMIQQPHK 82 (345)
T ss_dssp CTTCEEEECCCEEEEEEECCH--HHHHHTTCCSSEEEECCGGGHHHHHHHHHHSCCEEEEECHHHHHHHHHHHHHCSSTT
T ss_pred ccccEEEECCcceeEEEecCH--HHHHHcCCCCCcEEEchHHHHHHHHHHhccCCceecCCcHHHHHHHHHHHhcCCCCC
Confidence 346899999999999987521 01 000 00011111111235778899999999999999996 9
Q ss_pred CeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCcc-ccc----hhhh
Q 008168 267 KVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKS-EIN----IDVL 341 (575)
Q Consensus 267 ~v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~-~i~----~~~l 341 (575)
++.|+|.||+|.+|+++++.|++.||++.++.. ++.+|++++++++ +|++++. ...++...++++ ++. ...+
T Consensus 83 ~~~~ig~vG~D~~G~~i~~~L~~~gv~~~~v~~-~~~~T~~~~~~~~-~g~r~~~-~~~~a~~~~~~~~~~~~~~~~~~~ 159 (345)
T 1bx4_A 83 AATFFGCIGIDKFGEILKRKAAEAHVDAHYYEQ-NEQPTGTCAACIT-GDNRSLI-ANLAAANCYKKEKHLDLEKNWMLV 159 (345)
T ss_dssp CEEEEEEEESSHHHHHHHHHHHHTTCEEEEEEE-SSSCCCEEEEEEE-TTEEEEE-EECGGGGGCCGGGTTTSHHHHHHH
T ss_pred cEEEEEEeCCChhHHHHHHHHHHcCCceeeeec-CCCCCceEEEEEc-CCceEee-eccchHhhcCcccccCcHHHHHHH
Confidence 999999999999999999999999999999864 5678999998887 6777653 567777778877 765 3457
Q ss_pred ccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCC
Q 008168 342 KEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGI 421 (575)
Q Consensus 342 ~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~ 421 (575)
..+++||++|+.+. .+.+.+.++++.++++|+++++|+. .++|. +...+.+.++++++|+|++|++|+..|+|.
T Consensus 160 ~~~~~v~~~g~~~~--~~~~~~~~~~~~a~~~g~~v~~d~~--~~~~~--~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 233 (345)
T 1bx4_A 160 EKARVCYIAGFFLT--VSPESVLKVAHHASENNRIFTLNLS--APFIS--QFYKESLMKVMPYVDILFGNETEAATFARE 233 (345)
T ss_dssp HHCSEEEEEGGGGG--TCHHHHHHHHHHHHHTTCEEEEECC--SHHHH--HHTHHHHHHHGGGCSEEEEEHHHHHHHHHH
T ss_pred hhCCEEEEEEEecc--CCHHHHHHHHHHHHHcCCEEEEeCC--cHHHH--HHHHHHHHHHhccCCEEeCCHHHHHHHhcc
Confidence 88999999987542 3457888999999999999999985 34442 234566778999999999999999999875
Q ss_pred CCCCcccccccccccccCCcHHHHHHHhh------cCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChh
Q 008168 422 KPTEEFDTKNNARSKFVHYEPEVIAPLWH------ENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASG 495 (575)
Q Consensus 422 ~~~~~~d~~~~~~~~~~~~~~e~~~~l~~------~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAG 495 (575)
......+ ..++++.|.. .|++.||||+|++|+++++.+...++++++.++.+ ++||||||
T Consensus 234 ~~~~~~~------------~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~~~--vvDttGAG 299 (345)
T 1bx4_A 234 QGFETKD------------IKEIAKKTQALPKMNSKRQRIVIFTQGRDDTIMATESEVTAFAVLDQDQKE--IIDTNGAG 299 (345)
T ss_dssp TTCCCCC------------HHHHHHHHHTSCCSCTTSCCEEEEEETTEEEEEECSSCEEEECCCCCCCTT--CCCHHHHH
T ss_pred cCCCCCC------------HHHHHHHHHhcccccccCCCEEEEEeCCCCeEEEECCeEEEEeccccCcCc--cccCCCcc
Confidence 4221111 2356677777 58999999999999999977655555543211113 79999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcccccCCCCCCH
Q 008168 496 DGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPK 546 (575)
Q Consensus 496 DaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~ 546 (575)
|+|+|||+++|++| +++++|+++|+++|+++|++.|+. +|++
T Consensus 300 Daf~ag~~~~l~~g-------~~~~~a~~~A~~~aa~~v~~~G~~--~p~~ 341 (345)
T 1bx4_A 300 DAFVGGFLSQLVSD-------KPLTECIRAGHYAASIIIRRTGCT--FPEK 341 (345)
T ss_dssp HHHHHHHHHHHTTT-------CCHHHHHHHHHHHHHHHTTSSSSC--CCSS
T ss_pred hHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHhccCCC--CCCc
Confidence 99999999999999 999999999999999999999985 5653
No 40
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=2.2e-39 Score=337.90 Aligned_cols=298 Identities=14% Similarity=0.149 Sum_probs=234.6
Q ss_pred CCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccc--cCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHH
Q 008168 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDAL--WAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYG 280 (575)
Q Consensus 203 ~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~--~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G 280 (575)
-.|.|+|+|++++|++.... + |. +.+.. +++..+...+||+++|+|++|++||.++.++|.||+| +|
T Consensus 11 ~~~~~~v~G~~~vD~~~~~~---~-~~------~g~~~~~s~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~d-~G 79 (331)
T 2ajr_A 11 HHMVLTVTLNPALDREIFIE---D-FQ------VNRLYRINDLSKTQMSPGGKGINVSIALSKLGVPSVATGFVGGY-MG 79 (331)
T ss_dssp -CCEEEEESSCEEEEEEECT---T-CC------SSCEEECCSGGGEEEEEESHHHHHHHHHHHTTCCEEEEEEEEHH-HH
T ss_pred cceEEEEecchHHeEEEEcC---C-cc------CCceEEeccccceEEecCcHHHHHHHHHHHcCCCeEEEEEecCc-hH
Confidence 35789999999999998763 2 21 11111 1226788999999999999999999999999999998 99
Q ss_pred HHHHHHHHhCC--CccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccch------hhhccCcEEEEecc
Q 008168 281 QAMLYYMNVNN--VQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI------DVLKEAKMFYFSTH 352 (575)
Q Consensus 281 ~~l~~~L~~~G--Idt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~------~~l~~ad~v~~sg~ 352 (575)
+++++.|++.| |++.++.+.+ .|++++++++.+|++.+.+...++ .+++++++. ..+..+++||++|+
T Consensus 80 ~~i~~~L~~~g~~V~~~~v~~~~--~t~~~~~~v~~~g~~~~~~~~~g~--~l~~~~~~~~~~~~~~~~~~~~~v~~~g~ 155 (331)
T 2ajr_A 80 KILVEELRKISKLITTNFVYVEG--ETRENIEIIDEKNKTITAINFPGP--DVTDMDVNHFLRRYKMTLSKVDCVVISGS 155 (331)
T ss_dssp HHHHHHHHHHCTTEEEEEEEESS--CCEEEEEEEETTTTEEEEEECCCC--CCCHHHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred HHHHHHHHHcCCccceEEEEcCC--CCeEEEEEEeCCCceEEEEeCCCC--CCCHHHHHHHHHHHHHhcccCCEEEEECC
Confidence 99999999999 9999988754 477777778777887344555554 366655431 34678999999975
Q ss_pred cccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhc---cCeEeecCHHH-HHHhhCCCCCCccc
Q 008168 353 SMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT---LADVIEVTKQE-LEFLCGIKPTEEFD 428 (575)
Q Consensus 353 ~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~---~aDIl~~N~~E-a~~L~g~~~~~~~d 428 (575)
... ....+.+.++++.++++|++|+|||+. ..+.++++ ++|++++|++| +..|+|....+..+
T Consensus 156 ~~~-~~~~~~~~~~~~~a~~~g~~v~~D~~~------------~~~~~~l~~~~~~dil~~N~~E~~~~l~g~~~~~~~~ 222 (331)
T 2ajr_A 156 IPP-GVNEGICNELVRLARERGVFVFVEQTP------------RLLERIYEGPEFPNVVKPDLRGNHASFLGVDLKTFDD 222 (331)
T ss_dssp CCT-TSCTTHHHHHHHHHHHTTCEEEEECCH------------HHHHHHHHSSCCCSEECCCCTTCCSCBTTBCCCSHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHcCCEEEEECCh------------HHHHHHHhcCCCCeEEEeCccchHHHHhCCCCCCHHH
Confidence 321 123567888999999999999999862 12344454 49999999999 99998865332111
Q ss_pred ccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEe-cccCCCCCCcccCccChhHHHHHHHHHHHH
Q 008168 429 TKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVL-GTEDAPLTPFTSDMSASGDGIVAGIMRMLT 507 (575)
Q Consensus 429 ~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~-a~~~~~v~~~vVDttGAGDaF~AGfl~~L~ 507 (575)
..+.++.|++. ++.||||+|++|+++++++...+++ + ++++ ++|||||||+|+|||+++|+
T Consensus 223 ------------~~~~~~~l~~~-~~~vvvT~G~~Ga~~~~~~~~~~~~~~---~~v~--vvDttGAGDaF~ag~l~~l~ 284 (331)
T 2ajr_A 223 ------------YVKLAEKLAEK-SQVSVVSYEVKNDIVATREGVWLIRSK---EEID--TSHLLGAGDAYVAGMVYYFI 284 (331)
T ss_dssp ------------HHHHHHHHHHH-SSEEEEEETTTEEEEECSSCEEEEEES---SCCC--GGGCTTHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHh-cCEEEEeecCCceEEEeCCcEEEEecC---Cccc--ccCCCchHHHHHHHHHHHHH
Confidence 12566777777 9999999999999999877655555 4 3454 89999999999999999999
Q ss_pred -cCCCCCCCchhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 508 -VQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 508 -~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
+| +++++|+++|+++|+++|++.|+ .+|+++++++++.+
T Consensus 285 ~~g-------~~~~~al~~A~a~aa~~v~~~G~--~~~~~~ev~~~~~~ 324 (331)
T 2ajr_A 285 KHG-------ANFLEMAKFGFASALAATRRKEK--YMPDLEAIKKEYDH 324 (331)
T ss_dssp HHC-------SCHHHHHHHHHHHHHHHTTSSSC--CCCCHHHHHTTGGG
T ss_pred HcC-------CCHHHHHHHHHHHHHHHHcCcCc--CCCCHHHHHHHHhh
Confidence 99 99999999999999999999998 57999999999854
No 41
>4e84_A D-beta-D-heptose 7-phosphate kinase; LPS-heptose biosynthesis, beta-clAsp dimerization region, PF carbohydrate kinase, phosphorylation; HET: MSE ANP M7B GMZ; 2.60A {Burkholderia cenocepacia} PDB: 4e8w_A* 4e8y_A* 4e8z_A*
Probab=100.00 E-value=2e-39 Score=341.71 Aligned_cols=298 Identities=15% Similarity=0.146 Sum_probs=226.0
Q ss_pred CCCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHH
Q 008168 202 GWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQ 281 (575)
Q Consensus 202 ~~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~ 281 (575)
..+++|+|||++++|++..+. .+++.++. +... .....+...+||+ +|+|++|++||.+|.++|.||+|.+|+
T Consensus 51 ~~~~~ilvvG~~~~D~~~~g~-v~r~~p~~----p~~~-~~~~~~~~~~GG~-~NvA~~la~LG~~v~~ig~vG~D~~G~ 123 (352)
T 4e84_A 51 LARSRVLVVGDVMLDRYWFGN-VDRISPEA----PVPV-VHVQRQEERLGGA-ANVARNAVTLGGQAGLLCVVGCDEPGE 123 (352)
T ss_dssp HTTCEEEEEECEEEEEEEEEE-EEEECSSS----SSEE-EEEEEEEEEEEEH-HHHHHHHHHTTCEEEEEEEEESSHHHH
T ss_pred cCCCcEEEECccceEEEEeec-ccccCCCC----Ccce-EEeeEEEEecChH-HHHHHHHHHcCCCEEEEEEeCCChhHH
Confidence 456789999999999987521 12221100 0001 1235678899998 899999999999999999999999999
Q ss_pred HHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccc--hhhhccCcEEEEecccccccch
Q 008168 282 AMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN--IDVLKEAKMFYFSTHSMLERNM 359 (575)
Q Consensus 282 ~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~--~~~l~~ad~v~~sg~~l~~~~~ 359 (575)
++++.|++.||++ .+...++.+|++++++++.++++.......+....+..+.+. ...+..+++||++|+... +
T Consensus 124 ~i~~~L~~~GV~~-~~~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~---~ 199 (352)
T 4e84_A 124 RIVELLGSSGVTP-HLERDPALPTTIKLRVLARQQQLLRVDFEAMPTHEVLLAGLARFDVLLPQHDVVLMSDYAKG---G 199 (352)
T ss_dssp HHHHHHTTTSCEE-EEEEETTSCCCEEEEEEESSCEEEEEEECCCCCHHHHHHHHHHHHHHGGGCSEEEEECCSSS---S
T ss_pred HHHHHHHHcCCce-eeEECCCCCCceEEEEEcCCceEEEEEcCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCC---C
Confidence 9999999999999 555566789999999888655533222222322222222121 346789999999976421 2
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccC
Q 008168 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVH 439 (575)
Q Consensus 360 ~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~ 439 (575)
.+.+.++++.++++|++|+|||+.. .| .+++++|+|++|+.|++.|+| ...+..+
T Consensus 200 ~~~~~~~~~~a~~~g~~v~~D~~~~--~~-----------~~l~~~dil~pN~~Ea~~l~g-~~~~~~~----------- 254 (352)
T 4e84_A 200 LTHVTTMIEKARAAGKAVLVDPKGD--DW-----------ARYRGASLITPNRAELREVVG-QWKSEDD----------- 254 (352)
T ss_dssp CSSHHHHHHHHHHTTCEEEEECCSS--CC-----------STTTTCSEECCBHHHHHHHHC-CCSSHHH-----------
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCc--ch-----------hhccCCcEEcCCHHHHHHHhC-CCCCHHH-----------
Confidence 2236788899999999999999742 33 367899999999999999998 3222111
Q ss_pred CcHHHHHHHhh-cCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchh
Q 008168 440 YEPEVIAPLWH-ENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGY 518 (575)
Q Consensus 440 ~~~e~~~~l~~-~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~s 518 (575)
..+.++.|+. .|++.||||+|++|+++++++...++++ ++++ ++|||||||+|+|||+++|++| ++
T Consensus 255 -~~~~a~~l~~~~g~~~VvvT~G~~Ga~~~~~~~~~~~pa---~~v~--vvDttGAGDaF~ag~l~~l~~g-------~~ 321 (352)
T 4e84_A 255 -LRARVANLRAELDIDALLLTRSEEGMTLFSAGGELHAPA---LARE--VFDVSGAGDTVIATVATMLGAG-------VP 321 (352)
T ss_dssp -HHHHHHHHHHHHTCSEEEEECGGGCEEEEETTEEEEECC---CCSC--CSCCTTHHHHHHHHHHHHHHTT-------CC
T ss_pred -HHHHHHHHHHHhCCCEEEEEcCCCcEEEEECCceEEecC---CCcC--ccCCccccHHHHHHHHHHHHcC-------CC
Confidence 1355667765 6999999999999999998775555554 3454 8999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCCHHHHH
Q 008168 519 LVRTIKYAIDCGVRDQWSQARTLGYPPKEGME 550 (575)
Q Consensus 519 l~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve 550 (575)
+++|+++|+++|+++|++.|+.. |+++||+
T Consensus 322 l~~al~~A~aaaa~~v~~~Ga~~--~t~~el~ 351 (352)
T 4e84_A 322 LVDAVVLANRAAGIVVGKLGTAT--VDYDELF 351 (352)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSCC--CCHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCcc--CCHHHhc
Confidence 99999999999999999999964 7998885
No 42
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A*
Probab=100.00 E-value=1.3e-38 Score=328.10 Aligned_cols=295 Identities=15% Similarity=0.144 Sum_probs=225.8
Q ss_pred CCcEEEE-CcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008168 204 PPLVCCF-GSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 204 ~~~Vlvi-G~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~ 282 (575)
|++|+++ |++++|++.... ++.. +.......+...+||+++|+|++|++||.++.++|.||+| +|++
T Consensus 1 m~~I~~v~g~~~~D~~~~~~---~~~~--------g~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~d-~g~~ 68 (309)
T 3cqd_A 1 MVRIYTLTLAPSLDSATITP---QIYP--------EGKLRCTAPVFEPGGGGINVARAIAHLGGSATAIFPAGGA-TGEH 68 (309)
T ss_dssp CCCEEEECSSCEEEEEEEES---CCCS--------SSEEECCCCEEEEESHHHHHHHHHHHTTCCEEEEEEECHH-HHHH
T ss_pred CceEEEEeccchheEEEEcC---CCcC--------CCeeeccceeecCCchHHHHHHHHHHcCCCeEEEEEecCc-hHHH
Confidence 4567755 699999998763 2211 1122346788999999999999999999999999999997 9999
Q ss_pred HHHHHHhCCCccceEEEcCCCCceEEEEE-EcCCCCeEEEEecCCccccCCccccc------hhhhccCcEEEEeccccc
Q 008168 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMK-IGKRGRLRMTCVKPCAEDALTKSEIN------IDVLKEAKMFYFSTHSML 355 (575)
Q Consensus 283 l~~~L~~~GIdt~~v~~~~~~~T~~~~i~-vd~~Ger~~~~~~~ga~~~lt~~~i~------~~~l~~ad~v~~sg~~l~ 355 (575)
+++.|++.||+++++.+.++ |+.++++ ++.+|++++ +..+++ .+++++++ ...++. +++|++|+...
T Consensus 69 i~~~l~~~gv~~~~v~~~~~--t~~~~~~~~~~~g~~~~-~~~~g~--~~~~~~~~~~~~~~~~~~~~-~~v~~~g~~~~ 142 (309)
T 3cqd_A 69 LVSLLADENVPVATVEAKDW--TRQNLHVHVEASGEQYR-FVMPGA--ALNEDEFRQLEEQVLEIESG-AILVISGSLPP 142 (309)
T ss_dssp HHHHHHHTTCCEEEEECSSC--CCCCEEEEETTTCCEEE-EECCCC--CCCHHHHHHHHHHHHTSCTT-CEEEEESCCCT
T ss_pred HHHHHHHcCCCceeEEcCCC--CeeEEEEEEcCCCCEEE-EEcCCC--CCCHHHHHHHHHHHHHhhcC-CEEEEECCCCC
Confidence 99999999999999876543 5555566 777888644 455554 35555543 123567 99999986332
Q ss_pred ccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHH-hhccC-eEeecCHHHHHHhhCCCCCCcccccccc
Q 008168 356 ERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQ-AWTLA-DVIEVTKQELEFLCGIKPTEEFDTKNNA 433 (575)
Q Consensus 356 ~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~-ll~~a-DIl~~N~~Ea~~L~g~~~~~~~d~~~~~ 433 (575)
....+.+.++++.++++|++|+|||+.. .+.. +.+++ |++++|.+|+..|+|....+..+
T Consensus 143 -~~~~~~~~~~~~~a~~~g~~v~~D~~~~------------~~~~~l~~~~~dil~~N~~E~~~l~g~~~~~~~~----- 204 (309)
T 3cqd_A 143 -GVKLEKLTQLISAAQKQGIRCIVDSSGE------------ALSAALAIGNIELVKPNQKELSALVNRELTQPDD----- 204 (309)
T ss_dssp -TCCHHHHHHHHHHHHTTTCEEEEECCHH------------HHHHHTTTCCBSEECCBHHHHHHHHTSCCCSTTH-----
T ss_pred -CCCHHHHHHHHHHHHHcCCeEEEECChH------------HHHHHHHhCCCEEEeeCHHHHHHHhCCCCCCHHH-----
Confidence 2356788899999999999999998621 1233 33788 99999999999999875432111
Q ss_pred cccccCCcHHHHHHHhhcC-CCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCC
Q 008168 434 RSKFVHYEPEVIAPLWHEN-LKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHL 512 (575)
Q Consensus 434 ~~~~~~~~~e~~~~l~~~g-~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~ 512 (575)
..+.++.|++.| ++.||||+|++|++++++++..++++ ++++ ++|||||||+|+|||+++|++|
T Consensus 205 -------~~~~~~~l~~~g~~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--~vdttGAGDaf~a~~~~~l~~g--- 269 (309)
T 3cqd_A 205 -------VRKAAQEIVNSGKAKRVVVSLGPQGALGVDSENCIQVVP---PPVK--SQSTVGAGDSMVGAMTLKLAEN--- 269 (309)
T ss_dssp -------HHHHHHHHHHTTSBSCEEEECGGGCEEEECSSCEEEECC---CSCC--CCCCTTHHHHHHHHHHHHHHTT---
T ss_pred -------HHHHHHHHHHcCCCCEEEEEecCCceEEEECCceEEEeC---Cccc--cCCCcCcHHHHHHHHHHHHHcC---
Confidence 235677788888 99999999999999998765445544 4454 7999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 513 ITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 513 ~~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
+++++|+++|+++|+++|++.|+. +|+++++++++++
T Consensus 270 ----~~~~~a~~~A~~~aa~~~~~~G~~--~~~~~~v~~~~~~ 306 (309)
T 3cqd_A 270 ----ASLEEMVRFGVAAGSAATLNQGTR--LCSHDDTQKIYAY 306 (309)
T ss_dssp ----CCHHHHHHHHHHHHHHHTC-------CCCHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHcCcCCC--CCCHHHHHHHHHH
Confidence 999999999999999999999984 6999999998853
No 43
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Probab=100.00 E-value=3.3e-38 Score=327.78 Aligned_cols=294 Identities=14% Similarity=0.131 Sum_probs=231.5
Q ss_pred CcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHH
Q 008168 205 PLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAML 284 (575)
Q Consensus 205 ~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~ 284 (575)
|.|+|+|++++|++.... + |. .. .......+...+||+++|+|++|++||.++.++|.||+ .+|++++
T Consensus 3 m~i~v~g~~~~D~~~~v~---~-~~------~g-~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~-~~G~~i~ 70 (323)
T 2f02_A 3 LIVTVTMNPSIDISYLLD---H-LK------LD-TVNRTSQVTKTPGGKGLNVTRVIHDLGGDVIATGVLGG-FHGAFIA 70 (323)
T ss_dssp CEEEEESSCEEEEEEECS---C-CC------TT-SEEEESCEEEEEESHHHHHHHHHHHHTCCEEEEEEEEH-HHHHHHH
T ss_pred eEEEEecCceeEEEEecC---C-cc------cC-CEEEeceEEEcCCcHHHHHHHHHHHcCCCeEEEEEecc-chHHHHH
Confidence 689999999999998763 2 21 11 12233578899999999999999999999999999997 5999999
Q ss_pred HHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccch------hhhccCcEEEEecccccccc
Q 008168 285 YYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI------DVLKEAKMFYFSTHSMLERN 358 (575)
Q Consensus 285 ~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~------~~l~~ad~v~~sg~~l~~~~ 358 (575)
+.|++.||+++++.+.+ .|++++++++.+ ++ +.+...++ .+++++++. ..+..+++||++|+... ..
T Consensus 71 ~~L~~~gV~~~~v~~~~--~t~~~~~~~~~~-~~-~~~~~~g~--~l~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~-~~ 143 (323)
T 2f02_A 71 NELKKANIPQAFTSIKE--ETRDSIAILHEG-NQ-TEILEAGP--TVSPEEISNFLENFDQLIKQAEIVTISGSLAK-GL 143 (323)
T ss_dssp HHHHHTTCCBCCEEESS--CCEEEEEEEETT-EE-EEEEECCC--BCCHHHHHHHHHHHHHHHTTCSEEEEESCCCB-TS
T ss_pred HHHHHCCCceeEEEcCC--CCeeEEEEEcCC-Ce-EEEECCCC--CCCHHHHHHHHHHHHHhccCCCEEEEECCCCC-CC
Confidence 99999999999988754 367777777664 44 44455554 366665531 24578999999876432 12
Q ss_pred hHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhh---ccCeEeecCHHHHHHhhCCCCC-Cc-ccccccc
Q 008168 359 MKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAW---TLADVIEVTKQELEFLCGIKPT-EE-FDTKNNA 433 (575)
Q Consensus 359 ~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll---~~aDIl~~N~~Ea~~L~g~~~~-~~-~d~~~~~ 433 (575)
..+.+..+++.+++.|++|+|||+.. .+.+++ +++|+|++|.+|+..|+|.... +. .+
T Consensus 144 ~~~~~~~~~~~a~~~g~~v~~Dp~~~------------~~~~~l~~~~~~dil~~N~~E~~~l~g~~~~~~~~~~----- 206 (323)
T 2f02_A 144 PSDFYQELVQKAHAQEVKVLLDTSGD------------SLRQVLQGPWKPYLIKPNLEELEGLLGQDFSENPLAA----- 206 (323)
T ss_dssp CTTHHHHHHHHHHHTTCEEEEECCTH------------HHHHHHHSSCCCSEECCBHHHHHHHHTCCCCSSCHHH-----
T ss_pred ChHHHHHHHHHHHHCCCEEEEECChH------------HHHHHHhccCCCeEEecCHHHHHHHhCCCCCCCcHHH-----
Confidence 45678889999999999999998621 133444 5899999999999999987532 10 01
Q ss_pred cccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCC
Q 008168 434 RSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLI 513 (575)
Q Consensus 434 ~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~ 513 (575)
..+.++.|++.|++.||||+|++|+++++++...++++ ++++ ++|||||||+|+|||+++|++|
T Consensus 207 -------~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvdttGAGDaF~a~~~~~l~~g---- 270 (323)
T 2f02_A 207 -------VQTALTKPMFAGIEWIVISLGKDGAIAKHHDQFYRVKI---PTIQ--AKNPVGSGDATIAGLAYGLAKD---- 270 (323)
T ss_dssp -------HHHHHTSGGGTTCSEEEEECGGGCEEEEETTEEEEEEC---CCCC--CSCCTTHHHHHHHHHHHHHHTT----
T ss_pred -------HHHHHHHHHHcCCCEEEEeecCCceEEEeCCCEEEEcC---CCcc--ccCCccHHHHHHHHHHHHHHcC----
Confidence 12456677778999999999999999998765445554 4454 7999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 514 TDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 514 ~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
+++++|+++|+++|+++|++.|+ .+|+++++++++.+
T Consensus 271 ---~~~~~a~~~A~~~aa~~v~~~G~--~~~~~~ev~~~~~~ 307 (323)
T 2f02_A 271 ---APAAELLKWGMAAGMANAQERMT--GHVDVENVKKHLMN 307 (323)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHSSSS--SCCCHHHHHHHHTT
T ss_pred ---CCHHHHHHHHHHHHHHHHcCCCc--CCCCHHHHHHHhhc
Confidence 99999999999999999999998 47999999999865
No 44
>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum}
Probab=100.00 E-value=1.1e-38 Score=330.22 Aligned_cols=292 Identities=13% Similarity=0.142 Sum_probs=226.9
Q ss_pred CcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCC-CeEEEEEeCCChHHHHH
Q 008168 205 PLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGG-KVAFMGKLGDDEYGQAM 283 (575)
Q Consensus 205 ~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~-~v~lig~VG~D~~G~~l 283 (575)
|+|+|||++++|++... .......+||+++|+|++|++||. ++.++|.||+| +|+++
T Consensus 3 ~~ilviG~~~iD~~~~~---------------------~~~~~~~~GG~~~NvA~~la~LG~~~~~~ig~vG~D-~g~~~ 60 (313)
T 3kd6_A 3 LSLLVIGSLAFDDIETP---------------------FGRSDNTLGGSSTYIALSASYFTDEPIRMVGVVGSD-FGKEH 60 (313)
T ss_dssp CCEEEESCCEEEEEECS---------------------SCEEEEEEECHHHHHHHHHTTTCSSCEEEEEEEETT-SCHHH
T ss_pred ccEEEEeEEEEeeecCC---------------------CCcccccCCCHHHHHHHHHHHhCCCceEEEEecCCC-cHHHH
Confidence 68999999999999642 134678999999999999999999 99999999999 99999
Q ss_pred HHHHHhCCCccceEEEcCCCCceEEEEE--EcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHH
Q 008168 284 LYYMNVNNVQTRSVRIDAKRPTAVSQMK--IGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKS 361 (575)
Q Consensus 284 ~~~L~~~GIdt~~v~~~~~~~T~~~~i~--vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e 361 (575)
++.|++.||+++++.+.++.+|.+..-. .+.++++.+ ....++...+.+. + ...++++++||++++. .+
T Consensus 61 ~~~L~~~gVd~~~v~~~~~~~T~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~~v~~~~~~------~~ 131 (313)
T 3kd6_A 61 FDLLHAKNIDTRGIQVIEDGKTFRWAGRYHYDMNTRDTL-DTQLNVFAEFDPH-V-PQYYRDSKFVCLGNID------PE 131 (313)
T ss_dssp HHHHHHTTEEEEEEEEETTCCCEEEEEEECTTSSCEEEE-EEECGGGTTCCCC-C-CGGGTTCSEEEECSSC------HH
T ss_pred HHHHHHcCCCccceEEcCCCCeeeeeeeeecccccccee-ecccchHhhcCcc-c-hHHHccCCEEEEcCCC------HH
Confidence 9999999999999988876777432211 223344333 2334444444432 2 3567899999997642 23
Q ss_pred HHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCc
Q 008168 362 TTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYE 441 (575)
Q Consensus 362 ~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~ 441 (575)
....+++.+ +.+.+|+||| ..+|. ....+.+.++++++|+|++|++|++.|+|... .
T Consensus 132 ~~~~~~~~~-~~~~~v~~Dp---~~~~~--~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~-----------------~ 188 (313)
T 3kd6_A 132 LQLKVLDQI-DDPKLVVCDT---MNFWI--EGKPEELKKVLARVDVFIVNDSEARLLSGDPN-----------------L 188 (313)
T ss_dssp HHHHHHTTC-SSCSEEEEEC---CHHHH--HHCHHHHHHHHTTCSEEEEEHHHHHHHHSCSC-----------------H
T ss_pred HHHHHHHHH-hhCCEEEEcC---hhhhh--hhhHHHHHHHHhcCCEEEeCHHHHHHHhCCCC-----------------H
Confidence 445666666 5788999997 35563 23456778899999999999999999998531 2
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHH
Q 008168 442 PEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVR 521 (575)
Q Consensus 442 ~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~e 521 (575)
.++++.|++.|++.||||+|.+|+++++++...++++ +++. .++|||||||+|+|||+++|++|..+ +..++.+
T Consensus 189 ~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~~~-~vvdttGAGDaf~a~~~~~l~~g~~~--~~~~l~~ 262 (313)
T 3kd6_A 189 VKTARIIREMGPKTLIIKKGEHGALLFTDNGIFAAPA---FPLE-SIYDPTGAGDTFAGGFIGHLARCGNT--SEAEMRK 262 (313)
T ss_dssp HHHHHHHHTTSCSEEEEECTTSCEEEEETTEEEEECC---CTTC-CCSCCTTHHHHHHHHHHHHHHHHCCC--CHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeeCCCcEEEEECCceEEeCC---CCCC-CcCCCCCccHHHHHHHHHHHHcCCCc--cccCHHH
Confidence 3677888888999999999999999998875555554 3441 27999999999999999999998100 0118999
Q ss_pred HHHHHHHHHHHHhcccccCCC-CCCHHHHHHhhCCC
Q 008168 522 TIKYAIDCGVRDQWSQARTLG-YPPKEGMEEEVEPD 556 (575)
Q Consensus 522 Al~~A~aaAA~~v~~~G~~~g-~pt~eeve~~l~~~ 556 (575)
|+++|+++|+++|++.|+... .|++++|+++|+..
T Consensus 263 a~~~a~~~aa~~v~~~G~~~~~~~~~~ev~~~l~~~ 298 (313)
T 3kd6_A 263 AVLYGSAMASFCVEQFGPYRYNDLDLLEVDDRYQSF 298 (313)
T ss_dssp HHHHHHHHHHHHTTSSTTGGGGTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHeecCCCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999853 58999999998654
No 45
>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A*
Probab=100.00 E-value=1.6e-38 Score=338.09 Aligned_cols=313 Identities=16% Similarity=0.163 Sum_probs=233.7
Q ss_pred cCCCCcEEEECcceeeeeccCCCCCC-C-----cchh-------hhhhhcccccCCCceEEecCChHHHHHHHHHHc---
Q 008168 201 YGWPPLVCCFGSAQHAFVPSGRPANR-L-----IDHE-------IHERMKDALWAPEKFIRSPGGCTGSAAIALARL--- 264 (575)
Q Consensus 201 ~~~~~~VlviG~~~vDii~~~~~~~~-l-----p~~e-------~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarL--- 264 (575)
.+.+++|+|+|++++|++..+. + + |.+. .+.+....+ .+..+...+||+++|+|++|++|
T Consensus 29 ~~~~~~vlviG~~~lD~~~~~~---~~~~~~~~~~~g~~~~~~~~~~p~~~~~-~~~~~~~~~GG~~~NvA~~la~Lg~~ 104 (383)
T 2abs_A 29 ATGPMRVFAIGNPILDLVAEVP---SSFLDEFFLKRGDATLATPEQMRIYSTL-DQFNPTSLPGGSALNSVRVVQKLLRK 104 (383)
T ss_dssp -CCCCCEEEECCCEEEEEEECC---HHHHHHTTCCTTCEEECCGGGGGGGGTG-GGGCCEEEEESHHHHHHHHHHHHHCS
T ss_pred CCCCceEEEECcchheeEeccC---HHHHHhcCCCCCceeechhhHHHHHHhh-ccccceeeCCChHHHHHHHHHHhccC
Confidence 3456789999999999998752 2 1 1100 001111122 34567889999999999999999
Q ss_pred CCCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccC
Q 008168 265 GGKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEA 344 (575)
Q Consensus 265 G~~v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~a 344 (575)
|.++.|+|.||+|.+|+++++.|++.||++.++. .++.+|++++++++ +|+++++ .+.++...+++++.....+..+
T Consensus 105 g~~v~~ig~vG~D~~G~~i~~~L~~~GV~~~~v~-~~~~~T~~~~~~~~-~g~r~~~-~~~~a~~~l~~~~~~~~~l~~~ 181 (383)
T 2abs_A 105 PGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMV-APGQSTGVCAVLIN-EKERTLC-THLGACGSFRLPEDWTTFASGA 181 (383)
T ss_dssp TTSEEEEEEECSSHHHHHHHHHHHHHTCEEEEEE-CTTCCCEEEEEEEE-TTEEEEE-EECGGGGGCCCCTTHHHHTTTC
T ss_pred CCcEEEEEEecCChhHHHHHHHHHHcCCceeeee-cCCCCCeEEEEEEc-CCceeEe-eccChhhhCChhhhhHHHhhcC
Confidence 8999999999999999999999999999999986 45678999999887 6777664 5677777777764445668899
Q ss_pred cEEEEecccccccchHHHHHHHHHHHhh-cCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCC
Q 008168 345 KMFYFSTHSMLERNMKSTTLQAIKISKQ-FGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKP 423 (575)
Q Consensus 345 d~v~~sg~~l~~~~~~e~~~~~l~~ak~-~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~ 423 (575)
++||++|+.+. ...+.+.++++.+++ .|+++++|+. .++|. +...+.+.++++++|||++|+.|+..|+|...
T Consensus 182 ~~v~~~g~~~~--~~~~~~~~~~~~a~~~~g~~v~~d~~--~~~~~--~~~~~~l~~ll~~~dil~pN~~Ea~~L~g~~~ 255 (383)
T 2abs_A 182 LIFYATAYTLT--ATPKNALEVAGYAHGIPNAIFTLNLS--APFCV--ELYKDAMQSLLLHTNILFGNEEEFAHLAKVHN 255 (383)
T ss_dssp CEEEEEGGGGT--TCHHHHHHHHHHHHTSTTCEEEEECC--CHHHH--HHCHHHHHHHHHTCSEEEEEHHHHHHHHHHHT
T ss_pred CEEEEeeeccc--CCHHHHHHHHHHHHHhcCCEEEEeCC--cHHHH--HHHHHHHHHHHhhCCEEeCCHHHHHHHhcccC
Confidence 99999987542 345788899999998 8999999975 34442 33456677899999999999999999986431
Q ss_pred CCc-cc---ccccccccccCCcHHHHHHHhh------c-CCCEEEEEcCCCcEEEEE-----cCCceeEecccCCCCCC-
Q 008168 424 TEE-FD---TKNNARSKFVHYEPEVIAPLWH------E-NLKVLFVTNGTSKVHYYT-----KEDDGAVLGTEDAPLTP- 486 (575)
Q Consensus 424 ~~~-~d---~~~~~~~~~~~~~~e~~~~l~~------~-g~k~VVVT~G~~Ga~v~~-----~~~~~~v~a~~~~~v~~- 486 (575)
... .+ ....... ...++++.|.. . |++.||||+|.+|++++. .+...++++ ++++.
T Consensus 256 ~~~~~~~~~s~~~~~~----~~~~~a~~l~~~~~~~~~~g~~~VvvT~G~~Ga~~~~~~~~~~~~~~~~~~---~~v~~~ 328 (383)
T 2abs_A 256 LVAAEKTALSTANKEH----AVEVCTGALRLLTAGQNTSATKLVVMTRGHNPVIAAEQTADGTVVVHEVGV---PVVAAE 328 (383)
T ss_dssp CC----------CHHH----HHHHHHHHHHHHHTTCCCSSCCEEEEECTTSCEEEEEECTTSCEEEEEECC---CCCCGG
T ss_pred cccccccccccccccc----cHHHHHHHHHhccccccccCCCEEEEEcCCCCeEEEEeecCCCCeEEEecC---ccCCcC
Confidence 100 00 0000000 01245566665 3 899999999999999984 322223333 33311
Q ss_pred cccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcccccC
Q 008168 487 FTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQART 540 (575)
Q Consensus 487 ~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~ 540 (575)
.++|||||||+|+|||+++|++| +++++|+++|+++|+++|++.|+.
T Consensus 329 ~vvDttGAGDaF~ag~~~~l~~g-------~~l~~al~~A~a~aa~~v~~~Ga~ 375 (383)
T 2abs_A 329 KIVDTNGAGDAFVGGFLYALSQG-------KTVKQCIMCGNACAQDVIQHVGFS 375 (383)
T ss_dssp GCCCCTTHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHHHTSSSCC
T ss_pred CcCcCCChHHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHhcCCcc
Confidence 27999999999999999999999 999999999999999999999985
No 46
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A
Probab=100.00 E-value=7.2e-38 Score=323.85 Aligned_cols=282 Identities=14% Similarity=0.142 Sum_probs=220.9
Q ss_pred CCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHH
Q 008168 203 WPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQA 282 (575)
Q Consensus 203 ~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~ 282 (575)
.+++|+|||++++|++... +++|.+. ...........+||+++|+|++|++||.++.++|.||+|.+|++
T Consensus 16 ~~~~i~viG~~~iD~~~~~---~~~p~~~-------~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~~ig~vG~D~~G~~ 85 (312)
T 2hlz_A 16 RGSQILCVGLVVLDVISLV---DKYPKED-------SEIRCLSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVADF 85 (312)
T ss_dssp -CCEEEEESCCEEEEEEEE---SSCCCTT-------CEEECSEEEEEEESHHHHHHHHHHHHTCCEEEEEEECSSHHHHH
T ss_pred CCCcEEEECcceEEEeecc---ccCCCcc-------ceeecccceeccCccHHHHHHHHHHcCCceEEEEEecCchHHHH
Confidence 4568999999999999865 3454321 11123456789999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccceEEEcCCCCceEEEEEEc-CCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHH
Q 008168 283 MLYYMNVNNVQTRSVRIDAKRPTAVSQMKIG-KRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKS 361 (575)
Q Consensus 283 l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd-~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e 361 (575)
+++.|++.||+++++.+.++.+|++++++++ .+|++++. .+.++...+++++++...+..+++||++++. .+
T Consensus 86 l~~~L~~~GV~~~~v~~~~~~~T~~~~~~v~~~~g~r~~~-~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~------~~ 158 (312)
T 2hlz_A 86 VLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTIL-YYDRSLPDVSATDFEKVDLTQFKWIHIEGRN------AS 158 (312)
T ss_dssp HHHHHHHTTCBCTTEEECSSCCCCEEEEEEETTTCCEEEE-EECCCCCCCCHHHHHTSCGGGEEEEEEECSS------HH
T ss_pred HHHHHHHcCCCCccceeccCCCCCeEEEEEECCCCceEEE-ecCCccccCCHHHhhHhhhccCCEEEEeccC------HH
Confidence 9999999999999998876667888777775 46888775 4556666777777654467889999999752 34
Q ss_pred HHHHHHHHHhhc--------CCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccc
Q 008168 362 TTLQAIKISKQF--------GGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNA 433 (575)
Q Consensus 362 ~~~~~l~~ak~~--------G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~ 433 (575)
.+.++++.+++. +++|++|+.... +.+.++++++|+|++|++|+..| |...
T Consensus 159 ~~~~~~~~a~~~~~~~~~~~~~~v~~d~~~~~----------~~~~~~l~~~dil~~n~~ea~~l-g~~~---------- 217 (312)
T 2hlz_A 159 EQVKMLQRIDAHNTRQPPEQKIRVSVEVEKPR----------EELFQLFGYGDVVFVSKDVAKHL-GFQS---------- 217 (312)
T ss_dssp HHHHHHHHHHHHHTTSCGGGCCEEEEEECSCC----------GGGGGGGGSSSEEEECHHHHHHT-TCCS----------
T ss_pred HHHHHHHHHHHhcccccCCCCeEEEEEcccch----------HHHHHHHhcCCEEEEcHHHHHHc-CCCC----------
Confidence 556777777766 789999975321 23567899999999999999987 5321
Q ss_pred cccccCCcHHHHHHHhhcCC--CEEEEEcCCCcEEEEEcCCc-eeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCC
Q 008168 434 RSKFVHYEPEVIAPLWHENL--KVLFVTNGTSKVHYYTKEDD-GAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQP 510 (575)
Q Consensus 434 ~~~~~~~~~e~~~~l~~~g~--k~VVVT~G~~Ga~v~~~~~~-~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~ 510 (575)
..+.++.+...+. +.||||+|.+|+++++.++. .+++++ +.++ ++|||||||+|+|||+++|++|
T Consensus 218 -------~~~~~~~l~~~~~~g~~vvvt~G~~G~~~~~~~~~~~~~~~~--~~~~--vvdt~GAGDaf~a~~~~~l~~g- 285 (312)
T 2hlz_A 218 -------AEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAF--PPPR--VVDTLGAGDTFNASVIFSLSQG- 285 (312)
T ss_dssp -------HHHHHHHHGGGSCTTCEEEEECGGGCEEEECTTCCEEEECCC--CCSS--CCCCTTHHHHHHHHHHHHHHTT-
T ss_pred -------HHHHHHHHHHhcCCCCEEEEEecccCeEEEccCCCEEECCCC--CCCC--cccCCCchHHHHHHHHHHHHcC-
Confidence 1245555655433 89999999999999875433 344442 1233 7999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhcccccC
Q 008168 511 HLITDKGYLVRTIKYAIDCGVRDQWSQART 540 (575)
Q Consensus 511 ~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~ 540 (575)
+++++|+++|+++|+++|++.|+.
T Consensus 286 ------~~~~~a~~~a~~~aa~~v~~~G~~ 309 (312)
T 2hlz_A 286 ------RSVQEALRFGCQVAGKKCGLQGFD 309 (312)
T ss_dssp ------CCHHHHHHHHHHHHHHHHTSSSSG
T ss_pred ------CCHHHHHHHHHHHHHHHHhhcCcc
Confidence 999999999999999999999974
No 47
>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728}
Probab=100.00 E-value=2.4e-39 Score=334.44 Aligned_cols=283 Identities=14% Similarity=0.129 Sum_probs=225.8
Q ss_pred ccCCCCcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChH
Q 008168 200 TYGWPPLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEY 279 (575)
Q Consensus 200 ~~~~~~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~ 279 (575)
++..+++|+|+|++++|++... +++|. . .......+...+||+++|+|++|++||.++.++|.||+| +
T Consensus 16 ~~~~~~~v~viG~~~iD~~~~~---~~~p~-g-------~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D-~ 83 (306)
T 3bf5_A 16 YFQGMRFLAYFGHLNIDVLISV---DSIPR-E-------GSVNVKDLRPRFGGTAGNFAIVAQKFRIPFDLYSAVGMK-T 83 (306)
T ss_dssp ---CCEEEEEECCCEEEEEEEC---SCCCS-S-------EEEECSEEEEEEEHHHHHHHHHHHHTTCCCEEEEEEETT-T
T ss_pred eccCCCcEEEECCceEEEEEec---CCCCC-C-------ceEECcceEecCCChHHHHHHHHHHcCCCeEEEEEEeCC-h
Confidence 3456778999999999999875 34441 1 111235678899999999999999999999999999999 9
Q ss_pred HHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccch
Q 008168 280 GQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNM 359 (575)
Q Consensus 280 G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~ 359 (575)
|+++++.|++.||++.++.+.++.+|++++++++. |++++. .+.++...++ +++. ..+++||+++..
T Consensus 84 G~~i~~~L~~~gV~~~~v~~~~~~~T~~~~~~~~~-g~r~~~-~~~ga~~~~~-~~l~----~~~~~v~~~~~~------ 150 (306)
T 3bf5_A 84 HREYLAMIESMGINTGHVEKFEDESGPICYIATDG-KKQVSF-MHQGAMAAWA-PQLA----DEYEYVHFSTGP------ 150 (306)
T ss_dssp CHHHHHHHHHTTCCCTTEEEETTCCCSEEEEEECS-SCEEEE-EECTHHHHCC-CCCC----SCEEEEEECSSS------
T ss_pred HHHHHHHHHHcCCCchheEecCCCCCceEEEEEcC-CeeEEE-EeCChhhhhh-Hhhc----CCCCEEEECChH------
Confidence 99999999999999999877777789999999987 888765 4566666666 5542 678999998643
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccC
Q 008168 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVH 439 (575)
Q Consensus 360 ~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~ 439 (575)
.+.++++.+++ +|+|||+. .+|.. ..+.+.++++++|+|++|.+|+..|+|......
T Consensus 151 --~~~~~~~~a~~---~v~~D~~~--~~~~~---~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~------------- 207 (306)
T 3bf5_A 151 --NYLDMAKSIRS---KIIFDPSQ--EIHKY---SKDELKKFHEISYMSIFNDHEYRVFREMTGLSS------------- 207 (306)
T ss_dssp --SHHHHHHHCCS---EEEECCGG--GGGGS---CHHHHHHHHHHCSEEEEEHHHHHHHHHHHCCSS-------------
T ss_pred --HHHHHHHHhCC---cEEEcCch--hhhhc---cHHHHHHHHhcCCEEEcCHHHHHHHhCCCCcCc-------------
Confidence 44667777764 99999984 23321 245677888999999999999999987532110
Q ss_pred CcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhH
Q 008168 440 YEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYL 519 (575)
Q Consensus 440 ~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl 519 (575)
. .+ .||||+|++|+++++.++..++++ +++ . +|||||||+|+|||+++|++| +++
T Consensus 208 -~-----~l------~vvvT~G~~Ga~~~~~~~~~~~~~---~~v--~-vDttGAGDaF~ag~~~~l~~g-------~~~ 262 (306)
T 3bf5_A 208 -P-----KV------TTIVTNGERGSSLFMDGKKYDFPA---IPS--S-GDTVGAGDSFRAGLYLALYNR-------RSI 262 (306)
T ss_dssp -C-----SS------CEEEEEGGGEEEEEETTEEEEEEC---CCC--C-SCCTTHHHHHHHHHHHHHHTT-------CCH
T ss_pred -c-----cE------EEEEeecccCeEEEeCCcEEEecC---CcC--C-CCCCCccHHHHHHHHHHHHcC-------CCH
Confidence 0 11 199999999999998765445554 333 4 899999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHhcc--cccCCCCCCHHHHHHhhCC
Q 008168 520 VRTIKYAIDCGVRDQWS--QARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 520 ~eAl~~A~aaAA~~v~~--~G~~~g~pt~eeve~~l~~ 555 (575)
++|+++|+++|+++|++ .|+..++|+++++++++++
T Consensus 263 ~~a~~~A~~~aa~~v~~~~~G~~~~~p~~~ev~~~~~~ 300 (306)
T 3bf5_A 263 EKGMIYGTIIAHHVIDDGIENFSLNMEDLERETENYRR 300 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCccccccCCCHHHHHHHHHh
Confidence 99999999999999999 9998888999999999854
No 48
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1
Probab=100.00 E-value=1.3e-37 Score=320.58 Aligned_cols=292 Identities=15% Similarity=0.165 Sum_probs=230.7
Q ss_pred CcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHH
Q 008168 205 PLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAML 284 (575)
Q Consensus 205 ~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~ 284 (575)
|-+.|.|++++|++.... ++.. . .......+...+||+++|+|++|++||.++.++|.+|+ .+|++++
T Consensus 1 mi~tv~~n~~~D~~~~~~---~~~~-------g-~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~~~~vG~-~~g~~i~ 68 (306)
T 2abq_A 1 MIYTVTLNPSIDYIVQVE---NFQQ-------G-VVNRSERDRKQPGGKGINVSRVLKRLGHETKALGFLGG-FTGAYVR 68 (306)
T ss_dssp CEEEEESSCEEEEEEECT---TCCS-------S-SEEECSEEEEEEECHHHHHHHHHHHTTCCCEEEEEEEH-HHHHHHH
T ss_pred CEEEEecCchheEEEEcC---Cccc-------C-CeEEeceeEecCCchHHHHHHHHHHcCCCceEEEEecc-hhHHHHH
Confidence 346789999999998763 3321 1 12234678899999999999999999999999999998 8999999
Q ss_pred HHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccch--hh---hccCcEEEEecccccccch
Q 008168 285 YYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI--DV---LKEAKMFYFSTHSMLERNM 359 (575)
Q Consensus 285 ~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~--~~---l~~ad~v~~sg~~l~~~~~ 359 (575)
+.|++.||++.++.+.+ .|+.++++ .+|++++ +...++ .+++++++. .. ++.++++|++|+... ...
T Consensus 69 ~~L~~~gv~~~~v~~~~--~t~~~~~~--~~g~~~~-~~~~g~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~-~~~ 140 (306)
T 2abq_A 69 NALEKEEIGLSFIEVEG--DTRINVKI--KGKQETE-LNGTAP--LIKKEHVQALLEQLTELEKGDVLVLAGSVPQ-AMP 140 (306)
T ss_dssp HHHHHTTCEECCEEESS--CCEEEEEE--ESSSCEE-EBCCCC--CCCHHHHHHHHHHHTTCCTTCEEEEESCCCT-TSC
T ss_pred HHHHHcCCceEEEEcCC--CCceEEEE--eCCceEE-EECCCC--CCCHHHHHHHHHHHHhccCCCEEEEecCCCC-CCC
Confidence 99999999999998754 36777665 4677654 454443 466665532 12 578999999886432 234
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhc-cCeEeecCHHHHHHhhCCCCCCccccccccccccc
Q 008168 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT-LADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFV 438 (575)
Q Consensus 360 ~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~-~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~ 438 (575)
.+.+.++++.++++|++|+|||+. ..+.++++ ++|++++|.+|+..|+|....+..+
T Consensus 141 ~~~~~~~~~~a~~~g~~v~~D~~~------------~~~~~~l~~~~dil~~N~~E~~~l~g~~~~~~~~---------- 198 (306)
T 2abq_A 141 QTIYRSMTQIAKERGAFVAVDTSG------------EALHEVLAAKPSFIKPNHHELSELVSKPIASIED---------- 198 (306)
T ss_dssp TTHHHHHHHHHHTTTCEEEEECCH------------HHHHHHGGGCCSEECCBHHHHHHHHTSCCCSHHH----------
T ss_pred HHHHHHHHHHHHhcCCEEEEECCh------------HHHHHHHhcCCcEEecCHHHHHHHhCCCCCCHHH----------
Confidence 567888999999999999999851 23567888 9999999999999999875432111
Q ss_pred CCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchh
Q 008168 439 HYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGY 518 (575)
Q Consensus 439 ~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~s 518 (575)
..+.++.+++.|++.||||+|++|++++++++..++++ ++++ ++|||||||+|+|||+++|++| ++
T Consensus 199 --~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvdttGAGDaF~a~~~~~l~~g-------~~ 264 (306)
T 2abq_A 199 --AIPHVQRLIGEGIESILVSFAGDGALFASAEGMFHVNV---PSGE--VRNSVGAGDSVVAGFLAALQEG-------KS 264 (306)
T ss_dssp --HHHHHHHHHHTTCCEEEEECGGGCEEEEETTEEEEECC---CCCC--CCCCSSHHHHHHHHHHHHHHTT-------CC
T ss_pred --HHHHHHHHHHcCCCEEEEecCCCceEEEeCCCEEEEeC---CCcc--ccCCccHHHHHHHHHHHHHHcC-------CC
Confidence 13566778888999999999999999998765444443 4454 8999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCCC
Q 008168 519 LVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEPD 556 (575)
Q Consensus 519 l~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~~ 556 (575)
+.+|+++|+++|+++|++. ++|+++++++++++.
T Consensus 265 ~~~a~~~A~a~aa~~v~~~----~~p~~~ev~~~~~~~ 298 (306)
T 2abq_A 265 LEDAVPFAVAAGSATAFSD----GFCTREEVERLQQQL 298 (306)
T ss_dssp HHHHHHHHHHHHHHHHHSS----SCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCc----CCCCHHHHHHHHhhE
Confidence 9999999999999999998 579999999998654
No 49
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus}
Probab=100.00 E-value=3.3e-37 Score=317.00 Aligned_cols=291 Identities=15% Similarity=0.156 Sum_probs=228.2
Q ss_pred CcEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHH
Q 008168 205 PLVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAML 284 (575)
Q Consensus 205 ~~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~ 284 (575)
|-+.|.|++++|++.... ++.. . .......+...+||+++|+|++|++||.++.++|.||+ .+|++++
T Consensus 1 mi~tvt~n~~~D~~~~~~---~~~~-------g-~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~~~~vG~-~~g~~i~ 68 (306)
T 2jg5_A 1 MIYTVTFNPSIDYVIFTN---DFKI-------D-GLNRATATYKFAGGKGINVSRVLKTLDVESTALGFAGG-FPGKFII 68 (306)
T ss_dssp CEEEEESSCEEEEEEECS---SCCT-------T-SEEECSEEEEEEESHHHHHHHHHHHTTCCCEEEEEECH-HHHHHHH
T ss_pred CEEEEecCceEEEEEEcC---Cccc-------C-ceEEeceeEecCCchHHHHHHHHHHcCCCeeEEEEecC-cchHHHH
Confidence 457889999999998763 3221 1 12234678899999999999999999999999999999 6999999
Q ss_pred HHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccch--hh---hccCcEEEEecccccccch
Q 008168 285 YYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI--DV---LKEAKMFYFSTHSMLERNM 359 (575)
Q Consensus 285 ~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~--~~---l~~ad~v~~sg~~l~~~~~ 359 (575)
+.|++.||++.++.+.+ .|++++++ .+|++.+ +...++ .+++++++. .. ++.++++|++|+... ...
T Consensus 69 ~~l~~~gv~~~~v~~~~--~t~~~~~~--~~g~~~~-~~~~g~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~-~~~ 140 (306)
T 2jg5_A 69 DTLNNSAIQSNFIEVDE--DTRINVKL--KTGQETE-INAPGP--HITSTQFEQLLQQIKNTTSEDIVIVAGSVPS-SIP 140 (306)
T ss_dssp HHHHHTTCEECCEECSS--CCEEEEEE--ESSSEEE-EECCCC--CCCHHHHHHHHHHHTTCCTTCEEEEESCCCT-TSC
T ss_pred HHHHHCCCceeEEEcCC--CCeEEEEE--cCCCEEE-EECCCC--CCCHHHHHHHHHHHHhccCCCEEEEeCCCCC-CCC
Confidence 99999999999987654 36666655 4677644 455554 356655531 11 567999999975322 123
Q ss_pred HHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhc-cCeEeecCHHHHHHhhCCCCCCccccccccccccc
Q 008168 360 KSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT-LADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFV 438 (575)
Q Consensus 360 ~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~-~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~ 438 (575)
.+.+..+++.++++|++|+|||+. ..+.++++ ++|++++|.+|+..|+|....+..+
T Consensus 141 ~~~~~~~~~~a~~~g~~v~~D~~~------------~~~~~~l~~~~dil~~N~~E~~~l~g~~~~~~~~---------- 198 (306)
T 2jg5_A 141 SDAYAQIAQITAQTGAKLVVDAEK------------ELAESVLPYHPLFIKPNKDELEVMFNTTVNSDAD---------- 198 (306)
T ss_dssp TTHHHHHHHHHHHHCCEEEEECCH------------HHHHHHGGGCCSEECCBHHHHHHHTTSCCCSHHH----------
T ss_pred hHHHHHHHHHHHHCCCEEEEECCh------------HHHHHHHhcCCeEEecCHHHHHHHhCCCCCCHHH----------
Confidence 467788899999999999999852 12455677 6999999999999999865432111
Q ss_pred CCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchh
Q 008168 439 HYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGY 518 (575)
Q Consensus 439 ~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~s 518 (575)
..+.++.+++.|++.||||+|++|+++++++...++++ ++++ ++|||||||+|+|||+++|++| ++
T Consensus 199 --~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~---~~v~--vvdttGAGDaf~a~~~~~l~~g-------~~ 264 (306)
T 2jg5_A 199 --VIKYGRLLVDKGAQSVIVSLGGDGAIYIDKEISIKAVN---PQGK--VVNTVGSGDSTVAGMVAGIASG-------LS 264 (306)
T ss_dssp --HHHHHHHHHHTTCSCEEEECGGGCEEEECSSEEEEEEC---CCCC--CCCCTTHHHHHHHHHHHHHHTT-------CC
T ss_pred --HHHHHHHHHHcCCCEEEEccCCCceEEEeCCcEEEEeC---Cccc--ccCCcChHHHHHHHHHHHHHcC-------CC
Confidence 13566777788999999999999999987665445554 4454 7999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 519 LVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 519 l~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
+.+|+++|+++|+++|++.| +|+++++++++++
T Consensus 265 ~~~a~~~A~a~aa~~v~~~G----~~~~~ev~~~~~~ 297 (306)
T 2jg5_A 265 IEKAFQQAVACGTATAFDED----LATRDAIEKIKSQ 297 (306)
T ss_dssp HHHHHHHHHHHHHHHHTSSS----SCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCC----CCCHHHHHHHHhc
Confidence 99999999999999999999 6999999999864
No 50
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=5.1e-35 Score=300.57 Aligned_cols=276 Identities=15% Similarity=0.096 Sum_probs=208.4
Q ss_pred cEEEECcceeeeeccCCCCCCCcchhhhhhhcccccCCCceEEecCChHHHHHHHHHHcCCCeEEEEEeCCChHHHHHHH
Q 008168 206 LVCCFGSAQHAFVPSGRPANRLIDHEIHERMKDALWAPEKFIRSPGGCTGSAAIALARLGGKVAFMGKLGDDEYGQAMLY 285 (575)
Q Consensus 206 ~VlviG~~~vDii~~~~~~~~lp~~e~~~~~~d~~~~~~~~~~~~GG~a~NvA~aLarLG~~v~lig~VG~D~~G~~l~~ 285 (575)
.|.++|.+..|.+... ..+...+||+++|+|++|++||.++.++|.||+|. +.+++
T Consensus 13 ~~~~~~~~~~~~~~~~----------------------~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~--~~~~~ 68 (298)
T 1vk4_A 13 MITFIGHVSKDVNVVD----------------------GKREIAYGGGVVMGAITSSLLGVKTKVITKCTRED--VSKFS 68 (298)
T ss_dssp EEEEECCCEEEEEEET----------------------TEEEEEEECHHHHHHHHHHHTTCEEEEEEEECTTT--GGGGT
T ss_pred eEEEeccccCceEeec----------------------CeEEEecCCHHHHHHHHHHHcCCceEEEEEEcCCH--HHHHH
Confidence 3788888888877543 56778999999999999999999999999999997 77889
Q ss_pred HHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccchhhhccCcEEEEecccccccchHHHHHH
Q 008168 286 YMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINIDVLKEAKMFYFSTHSMLERNMKSTTLQ 365 (575)
Q Consensus 286 ~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~~~l~~ad~v~~sg~~l~~~~~~e~~~~ 365 (575)
.|++.||++.++.. ..+|++++++ +.+|++++. ...++...++++++.. ..+++||++++...+ ...+
T Consensus 69 ~L~~~gVd~~~v~~--~~~t~~~~i~-~~~g~~~~~-~~~~~~~~l~~~~~~~---~~~~~v~~~~~~~~~-----~~~~ 136 (298)
T 1vk4_A 69 FLRDNGVEVVFLKS--PRTTSIENRY-GSDPDTRES-FLISAADPFTESDLAF---IEGEAVHINPLWYGE-----FPED 136 (298)
T ss_dssp TTGGGTCEEEEEEC--SSCEEEEEEC------CCEE-EEEECCCCCCGGGGGG---CCSSEEEECCSSTTS-----SCGG
T ss_pred HHHHcCCceEEEec--CCCcEEEEEE-cCCCCeeEE-EeccccccCCHHHcCc---CCCCEEEECCccccc-----ccHH
Confidence 99999999998764 3466666555 456777664 3345556677666532 579999998863321 1235
Q ss_pred HHHHHhhcCCEEEEcCCC-CCccccCc--hhHHHHHHHhhccCeEeecCHHHHHHhhCCCCCCcccccccccccccCCcH
Q 008168 366 AIKISKQFGGIIFYDVNL-PLPLWQSG--EETKMFIQQAWTLADVIEVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEP 442 (575)
Q Consensus 366 ~l~~ak~~G~~Vv~D~~~-~~~l~~~~--~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~ 442 (575)
+++.++++|++|+||++. ...+|... ....+.+.++++++|+|++|++|+..|+|... ..
T Consensus 137 ~~~~~~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~-----------------~~ 199 (298)
T 1vk4_A 137 LIPVLRRKVMFLSADAQGFVRVPENEKLVYRDWEMKEKYLKYLDLFKVDSREAETLTGTND-----------------LR 199 (298)
T ss_dssp GHHHHHHHCSEEEEETHHHHEEEETTEEEECCCTTHHHHGGGCSEEEEEHHHHHHHHSCSC-----------------HH
T ss_pred HHHHHHHcCCEEEEecCccccccccccccccchHHHHhhcccCCEEecCHHHHHHHhCCCC-----------------HH
Confidence 667778889999999862 11111100 00011356788999999999999999998641 23
Q ss_pred HHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHHHHHHHHHc-CCCCCCCchhHHH
Q 008168 443 EVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTV-QPHLITDKGYLVR 521 (575)
Q Consensus 443 e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~-g~~~~~d~~sl~e 521 (575)
++++.|.+.|++.||||+ ++|++++++ ...++++ ++++ ++|||||||+|+|||+++|++ | +++++
T Consensus 200 ~~~~~l~~~g~~~vvvT~-~~G~~~~~~-~~~~~~~---~~v~--vvDttGAGDaF~a~~~~~l~~~g-------~~~~~ 265 (298)
T 1vk4_A 200 ESCRIIRSFGAKIILATH-ASGVIVFDG-NFYEASF---RSWS--LEGRTGRGDTCTAAFLVGFVFKK-------MSIEK 265 (298)
T ss_dssp HHHHHHHHTTCSSEEEEE-TTEEEEESS-SEEEEEC---CCSS--GGGGTTHHHHHHHHHHHHHHTSC-------CCHHH
T ss_pred HHHHHHHhcCCCEEEEEc-CCCcEEEeC-CEEEecc---CCcc--cCCCcCccHHHHHHHHHHHHHcC-------CCHHH
Confidence 567778888999999999 999999876 4445553 4454 899999999999999999999 9 99999
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCHHHH
Q 008168 522 TIKYAIDCGVRDQWSQARTLGYPPKEGM 549 (575)
Q Consensus 522 Al~~A~aaAA~~v~~~G~~~g~pt~eev 549 (575)
|+++|+++|+++|++.|+... |+.+++
T Consensus 266 a~~~A~a~aa~~v~~~G~~~~-~~~~el 292 (298)
T 1vk4_A 266 ATKFAAAVTSVKMRHPGPLRR-EDLEAI 292 (298)
T ss_dssp HHHHHHHHHHHHTTSSSSCCG-GGGGGC
T ss_pred HHHHHHHHHHHHHccCCCCCC-CCHHHH
Confidence 999999999999999999754 666654
No 51
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A*
Probab=99.88 E-value=7.6e-23 Score=211.19 Aligned_cols=221 Identities=13% Similarity=0.095 Sum_probs=155.6
Q ss_pred CeEEEEEeCCChHHHHHHHHHHhCCCccceEEEc--CCCCceEEEEEEcCCCCeEEEEecCCccccCCccccc--hhh--
Q 008168 267 KVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRID--AKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEIN--IDV-- 340 (575)
Q Consensus 267 ~v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~--~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~--~~~-- 340 (575)
.+.++|.||+|. |+++ |++.||++.++.+. .+ .|++.+ ..+ ..++++++. .+.
T Consensus 12 ~~~~~g~vG~D~-g~~i---L~~~GV~~~~v~~~~~~~-~t~~~~--------------~~g--~~l~~~~i~~~~~~~~ 70 (312)
T 2yxt_A 12 SHVIRGYVGNRA-ATFP---LQVLGFEIDAVNSVQFSN-HTGYAH--------------WKG--QVLNSDELQELYEGLR 70 (312)
T ss_dssp EEESSSCSTHHH-HHHH---HHHTTCEEEEEEEEEESS-CTTSSC--------------CCE--EECCHHHHHHHHHHHH
T ss_pred cccCCCccchHh-hHHH---HHHcCCeEEEEEEEEecC-CCCcCC--------------ccC--ccCCHHHHHHHHHHHH
Confidence 467889999998 9988 99999999987653 21 232211 111 234555543 111
Q ss_pred ---hccCcEEEEecccccccchHHHHHHHHHHHhhcCC--EEEEcCCCCCc------cccCchhHHHHHHH-hhccCeEe
Q 008168 341 ---LKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGG--IIFYDVNLPLP------LWQSGEETKMFIQQ-AWTLADVI 408 (575)
Q Consensus 341 ---l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~--~Vv~D~~~~~~------l~~~~~~~~~~l~~-ll~~aDIl 408 (575)
+..+++||++..+ .+...+.+.++++.++++|. +++|||+.+.. +|. .++..+.+.. +++++|+|
T Consensus 71 ~~~~~~~~~v~~G~~~--~~~~~~~~~~~~~~a~~~g~~~~vv~Dp~~~~~~~~sg~~~~-~~~~~~~l~~~ll~~~dil 147 (312)
T 2yxt_A 71 LNNMNKYDYVLTGYTR--DKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDGEGSMYV-PEDLLPVYKEKVVPLADII 147 (312)
T ss_dssp HTTCCCCSEEEECCCC--CHHHHHHHHHHHHHHHHHCTTCEEEECCCCEEC--CCCEESS-CTTHHHHHHHTTGGGCSEE
T ss_pred hcCCccCCEEEECCCC--CHHHHHHHHHHHHHHHhhCCCCeEEECCCcCCCCCCCCCeeC-CHHHHHHHHHHhhhhCCEE
Confidence 5678998864332 22346677788999988875 48999986543 453 2344556664 89999999
Q ss_pred ecCHHHHHHhhCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCC------cEEEE-------EcC----
Q 008168 409 EVTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTS------KVHYY-------TKE---- 471 (575)
Q Consensus 409 ~~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~------Ga~v~-------~~~---- 471 (575)
+||..|++.|+|....+..+ ..++++.|++.|++.||||+|.. |++++ +.+
T Consensus 148 ~pN~~Ea~~L~g~~~~~~~~------------~~~~~~~l~~~g~~~VvvT~G~~g~~~~~G~~~~~~~~~~~~~~~~~~ 215 (312)
T 2yxt_A 148 TPNQFEAELLSGRKIHSQEE------------ALRVMDMLHSMGPDTVVITSSDLPSPQGSNYLIVLGSQRRRNPAGSVV 215 (312)
T ss_dssp CCCHHHHHHHHSCCCCSHHH------------HHHHHHHHHHHSCSEEEECCCSCCCTTCTTEEEEEEEEEC----CCCC
T ss_pred cCCHHHHHHHhCCCCCCHHH------------HHHHHHHHHHcCCCEEEEecccCCCCCCCceEEEEEeccccccccccc
Confidence 99999999999975432111 23566778888999999998876 47765 332
Q ss_pred -CceeEecccCCCCCCcccCccChhHHHHHHHHHHHHc-CCCCCCCchhHHHHHHHHHHHHHHHhcc
Q 008168 472 -DDGAVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTV-QPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 472 -~~~~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~-g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
...++++ ++++ + |||||||+|+|||+++|++ | +++.+|+++|+++|+.++++
T Consensus 216 ~~~~~~~~---~~v~--v-dttGAGDaf~a~~~~~l~~~g-------~~l~~a~~~A~a~a~~~v~~ 269 (312)
T 2yxt_A 216 MERIRMDI---RKVD--A-VFVGTGDLFAAMLLAWTHKHP-------NNLKVACEKTVSTLHHVLQR 269 (312)
T ss_dssp EEEEEEEE---ECCS--S-CCSSHHHHHHHHHHHHHHHST-------TCHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEee---cccC--C-CCCCchHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHH
Confidence 2233443 3454 5 9999999999999999998 8 89999999999999888763
No 52
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal 5'-phosphate, vitamin B6, phosphorylation, transferase; 2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*
Probab=99.88 E-value=3.6e-22 Score=203.18 Aligned_cols=230 Identities=13% Similarity=0.087 Sum_probs=160.3
Q ss_pred cCCCeEE-EEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEecCCccccCCccccch----
Q 008168 264 LGGKVAF-MGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVKPCAEDALTKSEINI---- 338 (575)
Q Consensus 264 LG~~v~l-ig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~~ga~~~lt~~~i~~---- 338 (575)
||+.... +|.+|.| ..+..|+..||++.++.. . +..+..|.+.+ .+ ..++.+++..
T Consensus 19 L~i~~~~~~g~~G~d----~~~~~l~~~Gv~~~~v~t--------~-i~~~~~g~~~~----~g--~~~~~~~~~~~~~~ 79 (283)
T 2ddm_A 19 VAVQSQVVYGSVGNS----IAVPAIKQNGLNVFAVPT--------V-LLSNTPHYDTF----YG--GAIPDEWFSGYLRA 79 (283)
T ss_dssp EEEEEEESSSSSTHH----HHHHHHHHTTCCEEEEEE--------E-EESSCTTSSCC----CE--EECCHHHHHHHHHH
T ss_pred EEEecccCCCcchHH----HHHHHHHHcCCeeeEEeE--------E-EeccCCCcCce----ee--eeCCHHHHHHHHHH
Confidence 4555444 6777776 245688889999987743 1 22244454431 11 2344444321
Q ss_pred --h--hhccCcEEEEecccccccchHHHHHHHHHHHhh--cCCEEEEcCCCCC---ccccCchhHHHHHHHhhccCeEee
Q 008168 339 --D--VLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQ--FGGIIFYDVNLPL---PLWQSGEETKMFIQQAWTLADVIE 409 (575)
Q Consensus 339 --~--~l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~--~G~~Vv~D~~~~~---~l~~~~~~~~~~l~~ll~~aDIl~ 409 (575)
. .++.+++|+++++.. ....+.+.++++.+++ .|++|+|||+.+. .+|...+........+++++|||+
T Consensus 80 l~~~~~~~~~~~v~~G~l~~--~~~~~~~~~~l~~a~~~~~g~~vv~Dp~~~~~~~~~~~~~~~~~~~~~~ll~~~dil~ 157 (283)
T 2ddm_A 80 LQERDALRQLRAVTTGYMGT--ASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGIT 157 (283)
T ss_dssp HHHTTCCTTCCEEEECCCSC--HHHHHHHHHHHHHHHTTCTTCEEEECCCCEETTTEECSCTTHHHHHHHTTGGGCSEEC
T ss_pred HHhcCCcccCCEEEECCcCC--HHHHHHHHHHHHHHHhcCCCCeEEECCcccCCCCCcccCHHHHHHHHHhhhhhceEec
Confidence 1 345789999875432 2356778888998887 7999999998764 566432222333456889999999
Q ss_pred cCHHHHHHhhCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCC-------cEEEEEcCCceeEecccCC
Q 008168 410 VTKQELEFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTS-------KVHYYTKEDDGAVLGTEDA 482 (575)
Q Consensus 410 ~N~~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~-------Ga~v~~~~~~~~v~a~~~~ 482 (575)
+|..|++.|+|....+..+ ..++++++...|++.||||.|.. |++++++++..+++. +
T Consensus 158 pN~~E~~~L~g~~~~~~~~------------~~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~G~~~~~~~~~~~~~~---~ 222 (283)
T 2ddm_A 158 PNIFELEILTGKNCRDLDS------------AIAAAKSLLSDTLKWVVVTSASGNEENQEMQVVVVTADSVNVISH---S 222 (283)
T ss_dssp CBHHHHHHHHTSCCSSHHH------------HHHHHHHHCCSSCCEEEEEC-------CEEEEEEEETTEEEEEEE---E
T ss_pred CCHHHHHHHhCCCCCCHHH------------HHHHHHHHHHcCCCEEEEccccCccCCCceeEEEEeCCceEEEee---c
Confidence 9999999999975432111 23567778888999999999999 888888765444544 2
Q ss_pred CCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhccccc
Q 008168 483 PLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQAR 539 (575)
Q Consensus 483 ~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~ 539 (575)
++ .+||+||||+|+|+|+++|++| +++.+|+++|+++++.+|++...
T Consensus 223 ~v---~vdt~GAGDaf~a~~~~~l~~g-------~~~~~A~~~A~a~a~~~v~~~~~ 269 (283)
T 2ddm_A 223 RV---KTDLKGTGDLFCAQLISGLLKG-------KALTDAVHRAGLRVLEVMRYTQQ 269 (283)
T ss_dssp CC---CCCCCCHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ee---CCCCCChHHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHHHHHh
Confidence 33 3799999999999999999999 99999999999999999987654
No 53
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Probab=99.82 E-value=4.7e-20 Score=188.37 Aligned_cols=164 Identities=10% Similarity=0.033 Sum_probs=121.1
Q ss_pred CcEEEEecccccccchHHHHHHHHHHHhhcCCE-EEEcCCCCC----ccccCchhHHHHHH-HhhccCeEeecCHHHHHH
Q 008168 344 AKMFYFSTHSMLERNMKSTTLQAIKISKQFGGI-IFYDVNLPL----PLWQSGEETKMFIQ-QAWTLADVIEVTKQELEF 417 (575)
Q Consensus 344 ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~-Vv~D~~~~~----~l~~~~~~~~~~l~-~ll~~aDIl~~N~~Ea~~ 417 (575)
+++|+++.+. ..+.+..+++.+++.+.+ |+|||+.+. .+|. .+..+.+. .+++++|||+||..|+..
T Consensus 95 ~~~v~~G~l~-----~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~g~~l~~--~~~~~~l~~~ll~~~dil~pN~~Ea~~ 167 (288)
T 1jxh_A 95 IDTTKIGMLA-----ETDIVEAVAERLQRHHVRNVVLDTVMLAKSGDPLLS--PSAIETLRVRLLPQVSLITPNLPEAAA 167 (288)
T ss_dssp CSEEEECCCC-----SHHHHHHHHHHHHHTTCCSEEEECCCC------CCC--HHHHHHHHHHTGGGCSEEECBHHHHHH
T ss_pred CCEEEECCCC-----CHHHHHHHHHHHHHCCCCeEEEcCcccCCCCCccCC--HHHHHHHHHHHHhhCcEEcCCHHHHHH
Confidence 6888775321 457778888999999986 999998653 3453 22233444 388999999999999999
Q ss_pred hhCC-CCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCc-----EEEEEcCCceeEecccCCCCCCcccCc
Q 008168 418 LCGI-KPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSK-----VHYYTKEDDGAVLGTEDAPLTPFTSDM 491 (575)
Q Consensus 418 L~g~-~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~G-----a~v~~~~~~~~v~a~~~~~v~~~vVDt 491 (575)
|+|. ...+..+ ..+++++|.+.|++.||||.|.+| ++++++++..+++. ++++ ++||
T Consensus 168 L~g~~~~~~~~~------------~~~~a~~l~~~g~~~Vvvt~G~~G~~~~~~~~~~~~~~~~~~~---~~~~--~vdt 230 (288)
T 1jxh_A 168 LLDAPHARTEQE------------MLAQGRALLAMGCEAVLMKGGHLEDAQSPDWLFTREGEQRFSA---PRVN--TKNT 230 (288)
T ss_dssp HHTCCCCCSHHH------------HHHHHHHHHHTTCSEEEEBC---------CEEECSSCEEEC------CCC--CSCC
T ss_pred HcCCCCCCCHHH------------HHHHHHHHHHhCCCEEEEeccCCCCCceeEEEEECCeEEEEec---cccC--CCCC
Confidence 9987 4332111 235677788889999999999999 88887664333333 3454 7999
Q ss_pred cChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcccc
Q 008168 492 SASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQA 538 (575)
Q Consensus 492 tGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G 538 (575)
+||||+|+|+|+++|++| .++.+|+++|+++++.+++...
T Consensus 231 tGAGD~f~a~~~a~l~~g-------~~~~~A~~~A~a~a~~~v~~~~ 270 (288)
T 1jxh_A 231 HGTGCTLSAALAALRPRH-------RSWGETVNEAKAWLSAALAQAD 270 (288)
T ss_dssp BTHHHHHHHHHHHHGGGS-------SSHHHHHHHHHHHHHHHHTTGG
T ss_pred CCchHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999 9999999999999999997763
No 54
>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylati structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2
Probab=99.80 E-value=2.4e-19 Score=179.65 Aligned_cols=164 Identities=15% Similarity=0.103 Sum_probs=121.2
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcC-CEEEEcCCCCCc----cccCchhHHHHH-HHhhccCeEeecCHHHHH
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFG-GIIFYDVNLPLP----LWQSGEETKMFI-QQAWTLADVIEVTKQELE 416 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G-~~Vv~D~~~~~~----l~~~~~~~~~~l-~~ll~~aDIl~~N~~Ea~ 416 (575)
..++++++.+ . ..+.+..+++.+++++ ++|+|||+.+.. +|. ....+.+ ..+++++|+|+||..|+.
T Consensus 70 ~~~~v~~G~l---~--~~~~~~~~~~~~~~~~~~~vv~Dp~~~~~~g~~l~~--~~~~~~~~~~ll~~~dil~pN~~E~~ 142 (258)
T 1ub0_A 70 PLHAAKTGAL---G--DAAIVEAVAEAVRRFGVRPLVVDPVMVAKSGDPLLA--KEAAAALKERLFPLADLVTPNRLEAE 142 (258)
T ss_dssp CCSEEEECCC---C--SHHHHHHHHHHHHHTTCCSEEECCCC---------C--HHHHHHHHHHTGGGCSEECCBHHHHH
T ss_pred CCCEEEECCc---C--CHHHHHHHHHHHHhCCCCcEEECCeeecCCCCcccC--hHHHHHHHHhhcccCeEEeCCHHHHH
Confidence 3677777532 1 3456777888888888 899999986543 553 1222334 568899999999999999
Q ss_pred HhhCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCC-c----EEEEEcCCceeEecccCCCCCCcccCc
Q 008168 417 FLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTS-K----VHYYTKEDDGAVLGTEDAPLTPFTSDM 491 (575)
Q Consensus 417 ~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~-G----a~v~~~~~~~~v~a~~~~~v~~~vVDt 491 (575)
.|+|....+..+ ..+.+++|.+.|++.||||.|.. | ++++++++..+++. ++++ ++||
T Consensus 143 ~L~g~~~~~~~~------------~~~~a~~l~~~g~~~vvvt~g~~~G~~~~~~~~~~~~~~~~~~---~~~~--~~dt 205 (258)
T 1ub0_A 143 ALLGRPIRTLKE------------AEEAAKALLALGPKAVLLKGGHLEGEEAVDLLATRGGVLRFSA---PRVH--TRNT 205 (258)
T ss_dssp HHHCSCCCSHHH------------HHHHHHHHHTTSCSCEEEEEEECC---EEEEEEETTEEEEEEE---CCCC--CSCC
T ss_pred HHhCCCCCCHHH------------HHHHHHHHHHcCCCEEEEccCCCCCCceEEEEEeCCeEEEEec---cccC--CCCC
Confidence 999975432111 23567778788999999999998 8 77887654444443 3454 7999
Q ss_pred cChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhccc
Q 008168 492 SASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQ 537 (575)
Q Consensus 492 tGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~ 537 (575)
+||||+|+|+|+++|++| +++.+|+++|+++++.++++.
T Consensus 206 ~GaGD~f~a~~~~~l~~g-------~~~~~a~~~a~~~~~~~~~~~ 244 (258)
T 1ub0_A 206 HGTGCTLSAAIAALLAKG-------RPLAEAVAEAKAYLTRALKTA 244 (258)
T ss_dssp TTHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHHHHTC
T ss_pred CChHHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 999999999999999888753
No 55
>2i5b_A Phosphomethylpyrimidine kinase; ADP complex, PDXK, THID, ribokinase superfamily, transferase; HET: ADP; 2.80A {Bacillus subtilis}
Probab=99.78 E-value=6.4e-18 Score=170.51 Aligned_cols=166 Identities=15% Similarity=0.012 Sum_probs=127.0
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCC-EEEEcCCCCCccccC--chhHHHHHH-HhhccCeEeecCHHHHHHh
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGG-IIFYDVNLPLPLWQS--GEETKMFIQ-QAWTLADVIEVTKQELEFL 418 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~-~Vv~D~~~~~~l~~~--~~~~~~~l~-~ll~~aDIl~~N~~Ea~~L 418 (575)
.+++++++.+ . ..+.+..+++.+++.+. +|+|||+.+...|.. ..+..+.+. ++++++|||+||..|+..|
T Consensus 74 ~~d~v~~G~l---~--~~~~~~~~~~~~~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~l~~~ll~~~diltpN~~E~~~L 148 (271)
T 2i5b_A 74 GVDAMKTGML---P--TVDIIELAAKTIKEKQLKNVVIDPVMVCKGANEVLYPEHAQALREQLAPLATVITPNLFEASQL 148 (271)
T ss_dssp CCSEEEECCC---C--SHHHHHHHHHHHHHTTCSSEEECCCCSSBCSSSBSSHHHHHHHHHHTGGGCSEECCBHHHHHHH
T ss_pred CCCEEEECCC---C--CHHHHHHHHHHHHhCCCCCEEEcCCcCCCCCCcCcCHHHHHHHHHHhHhhCcEEcCCHHHHHHH
Confidence 5788888642 2 24677788888888888 599999877655432 122334454 7889999999999999999
Q ss_pred hCCC-CCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCC--CcE----EEEEcCCceeEecccCCCCCCcccCc
Q 008168 419 CGIK-PTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGT--SKV----HYYTKEDDGAVLGTEDAPLTPFTSDM 491 (575)
Q Consensus 419 ~g~~-~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~--~Ga----~v~~~~~~~~v~a~~~~~v~~~vVDt 491 (575)
+|.. ..+..+ ..+.++++.+.|++.||||.|. +|+ ++++++...+++. ++++ ++||
T Consensus 149 ~g~~~~~~~~~------------~~~~a~~l~~~g~~~Vvvt~g~~~~g~~~~~~~~~~~~~~~~~~---~~~~--~~dt 211 (271)
T 2i5b_A 149 SGMDELKTVDD------------MIEAAKKIHALGAQYVVITGGGKLKHEKAVDVLYDGETAEVLES---EMID--TPYT 211 (271)
T ss_dssp HTCCCCCSHHH------------HHHHHHHHHTTTCSEEEEECGGGSCSSSEEEEEECSSCEEEEEE---CCCC--CSCC
T ss_pred hCCCCCCCHHH------------HHHHHHHHHHhCCCEEEEcCCCCCCCCceEEEEEeCCeEEEEec---cccC--CCCC
Confidence 9975 332111 2356777888899999999999 784 6666554444544 3444 7899
Q ss_pred cChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhccc
Q 008168 492 SASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQ 537 (575)
Q Consensus 492 tGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~ 537 (575)
+||||+|+|+|+++|++| +++.+|+++|+++++.+++..
T Consensus 212 ~GaGD~f~a~~~~~l~~g-------~~~~~A~~~A~~~~~~~~~~~ 250 (271)
T 2i5b_A 212 HGAGCTFSAAVTAELAKG-------AEVKEAIYAAKEFITAAIKES 250 (271)
T ss_dssp BTHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHHHHTC
T ss_pred CChHHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 999999999999999999865
No 56
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A*
Probab=99.72 E-value=6e-17 Score=165.60 Aligned_cols=169 Identities=17% Similarity=0.064 Sum_probs=126.3
Q ss_pred ccCcEEEEecccccccchHHHHHHHHHHHhhcC--CEEEEcCCCCC----ccccCchhHHHHHH-HhhccCeEeecCHHH
Q 008168 342 KEAKMFYFSTHSMLERNMKSTTLQAIKISKQFG--GIIFYDVNLPL----PLWQSGEETKMFIQ-QAWTLADVIEVTKQE 414 (575)
Q Consensus 342 ~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G--~~Vv~D~~~~~----~l~~~~~~~~~~l~-~ll~~aDIl~~N~~E 414 (575)
..+|+|++ |+ +.+....+.+.++++.+++.| .++++||+... .+|. ++..+.+. .+++++|+|+||..|
T Consensus 76 ~~~d~v~~-G~-l~~~~~~~~v~~~l~~~~~~~~~~~vv~DPVm~~~~~~~~~~--~~~~~~l~~~ll~~~diitpN~~E 151 (289)
T 3pzs_A 76 KDCDAVLS-GY-IGSPEQGSHILAAVAQVKQANPDAWYFCDPVMGHPEKGCIVA--PGVAEFFCNEALPASDMIAPNLLE 151 (289)
T ss_dssp GGCCEEEE-CC-CSSHHHHHHHHHHHHHHHHHCTTCEEEECCCCEETTTEECSC--HHHHHHHHHTHHHHCSEECCCHHH
T ss_pred cCCCEEEE-CC-CCCHHHHHHHHHHHHHHHhhCCCCeEEEcCccccCCCCcccC--HHHHHHHHHHhhccCCEEeCCHHH
Confidence 57888655 43 224456788899999988766 89999986532 2342 44455565 488999999999999
Q ss_pred HHHhhCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcC-CCcE-------EEEEcCCceeEecccCCCCCC
Q 008168 415 LEFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNG-TSKV-------HYYTKEDDGAVLGTEDAPLTP 486 (575)
Q Consensus 415 a~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G-~~Ga-------~v~~~~~~~~v~a~~~~~v~~ 486 (575)
++.|+|....+..+ ..+++++|.+.|++.||||.| ..|+ +++++++..+++. +.++.
T Consensus 152 ~~~L~g~~~~~~~~------------~~~aa~~l~~~g~~~Vvvt~~~~~G~~~~~~~~~~~~~~~~~~~~~---~~~~~ 216 (289)
T 3pzs_A 152 LEQLSGERVENVEQ------------AVQVARSLCARGPKVVLVKHLSRAGYHADCFEMLLVTADDAWHICR---PLVDF 216 (289)
T ss_dssp HHHHHTSCCCSHHH------------HHHHHHHHHTTSCSEEEECCCGGGSSCTTEEEEEEECSSCEEEEEE---ECCCC
T ss_pred HHHHhCCCCCCHHH------------HHHHHHHHHHHCCCEEEEecccCCCCCCCeEEEEEEeCCeEEEEEe---eeecC
Confidence 99999986543211 236778888889999999985 5786 6666665444443 23431
Q ss_pred cccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcc
Q 008168 487 FTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 487 ~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
.++|++||||+|+|+|+++|++| +++.+|+++|+++++.++..
T Consensus 217 ~v~dt~GaGD~f~a~~~~~l~~g-------~~~~~A~~~A~~~~~~~i~~ 259 (289)
T 3pzs_A 217 GKRQPVGVGDLTSGLLLVNLLKG-------EPLDKALEHVTAAVYEVMLK 259 (289)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHH
Confidence 13899999999999999999999 99999999999998777764
No 57
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A*
Probab=99.71 E-value=8.7e-17 Score=164.01 Aligned_cols=165 Identities=15% Similarity=0.017 Sum_probs=124.1
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCC--cccc-CchhHHHHHHHhhccCeEeecCHHHHHHhh
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPL--PLWQ-SGEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~--~l~~-~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~ 419 (575)
..+.|.++.+ .++...+.+.++++.. .+.+|+|||+++. .+|. ..++..+.+.++++++|||+||..|++.|+
T Consensus 74 ~~daik~G~l--~s~~~i~~v~~~l~~~--~~~~vv~DPv~~~~g~l~~l~~~~~~~~l~~ll~~adiitpN~~Ea~~L~ 149 (282)
T 3h74_A 74 HFDQALIGYV--GSVALCQQITTYLEQQ--TLSLLVVDPVLGDLGQLYQGFDQDYVAAMRQLIQQADVILPNTTEAALLT 149 (282)
T ss_dssp CCSEEEECCC--CSHHHHHHHHHHHHHS--CCSEEEECCCCEETTEECTTCCHHHHHHHHHHGGGCSEECCCHHHHHHHH
T ss_pred ccCEEEECCC--CCHHHHHHHHHHHHHC--CCCcEEEcCeeecCCCCCCCCCHHHHHHHHHHhccCCEECCCHHHHHHHh
Confidence 5788888632 2333444555555443 4789999999874 4565 245666677889999999999999999999
Q ss_pred CCCCCCcccccccccccccCCcHHHHHHHhh-cCC-CEEEEEcCC----CcEEEEE-cCCceeEecccCCCCCCcccCcc
Q 008168 420 GIKPTEEFDTKNNARSKFVHYEPEVIAPLWH-ENL-KVLFVTNGT----SKVHYYT-KEDDGAVLGTEDAPLTPFTSDMS 492 (575)
Q Consensus 420 g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~-~g~-k~VVVT~G~----~Ga~v~~-~~~~~~v~a~~~~~v~~~vVDtt 492 (575)
|....+..+ ..+++++|.+ .|+ +.||||.|. .|+++++ .+...+++. +++ .+|++
T Consensus 150 g~~~~~~~~------------~~~aa~~L~~~~g~~~~Vvvt~G~~~~~~g~~~~~~~~~~~~~~~---~~v---~~dt~ 211 (282)
T 3h74_A 150 GAPYQVTPD------------LEVILPALQAQLKTGAHAVITDVQRADQIGCAWLDEAGHVQYCGA---RRL---PGHYN 211 (282)
T ss_dssp TCCCCSSCC------------HHHHHHHHHTTSCTTCEECEEEEEETTEEEEEEECTTSCEEEEEE---ECC---SSCCT
T ss_pred CCCCCCHHH------------HHHHHHHHHHHhCCCCEEEEEecCCCCceEEEEEeCCCeEEEEEe---cCC---CCCCc
Confidence 976543211 3467788888 899 999999994 6888885 443334443 233 38999
Q ss_pred ChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcc
Q 008168 493 ASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 493 GAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
||||+|.|+|+++|++| +++.+|+++|+++++.++..
T Consensus 212 GaGD~fsaai~a~l~~g-------~~l~~A~~~A~~~~~~ai~~ 248 (282)
T 3h74_A 212 GTGDTLAAVIAGLLGRG-------YPLAPTLARANQWLNMAVAE 248 (282)
T ss_dssp THHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999888764
No 58
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A*
Probab=99.70 E-value=1.7e-16 Score=162.47 Aligned_cols=170 Identities=18% Similarity=0.094 Sum_probs=128.3
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCc--ccc-CchhHHHHHHHhhccCeEeecCHHHHHHhh
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLP--LWQ-SGEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~--l~~-~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~ 419 (575)
..+.|.++-+ .++...+.+.++++.+++.+++|+|||+.+.. +|. ..++..+.+.++++++|+|+||..|++.|+
T Consensus 77 ~~~aik~G~l--~s~~~i~~v~~~l~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~~~ll~~adiitpN~~Ea~~L~ 154 (291)
T 3mbh_A 77 QFDAIYTGYL--GSPRQIQIVSDFIKDFRQPDSLIVADPVLGDNGRLYTNFDMEMVKEMRHLITKADVITPNLTELFYLL 154 (291)
T ss_dssp CCSEEEECCC--SSTTHHHHHHHHHHHHCCTTCEEEECCCCEETTEECTTCCHHHHHHHHHHGGGCSEECCBHHHHHHHH
T ss_pred ccCEEEECCC--CCHHHHHHHHHHHHHhcCCCCcEEECceeeeCCCCCCCCCHHHHHHHHHHhccCCEEeCCHHHHHHHh
Confidence 5788887532 24456788888888887678999999987653 565 235566677889999999999999999999
Q ss_pred CCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcC-------CCcEEEEEcCC-c-eeEecccCCCCCCcccC
Q 008168 420 GIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNG-------TSKVHYYTKED-D-GAVLGTEDAPLTPFTSD 490 (575)
Q Consensus 420 g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G-------~~Ga~v~~~~~-~-~~v~a~~~~~v~~~vVD 490 (575)
|.......+.. ...+++++|.+.|++.||||.| ..|++++++++ . .+++. +.+ .+|
T Consensus 155 g~~~~~~~~~~---------~~~~aa~~L~~~g~~~Vvvtgg~~~~~~g~~g~~~~~~~~~~~~~~~~---~~~---~~d 219 (291)
T 3mbh_A 155 DEPYKADSTDE---------ELKEYLRLLSDKGPQVVIITSVPVHDEPHKTSVYAYNRQGNRYWKVTC---PYL---PAH 219 (291)
T ss_dssp TCCCCSCCCHH---------HHHHHHHHHHHTSCSEEEEEEEEETTEEEEEEEEEEETTTTEEEEEEE---SCC---GGG
T ss_pred CCCCCCCCCHH---------HHHHHHHHHHhhCCCEEEEEeccccCCCCcEEEEEEeCCCCeEEEEEe---ccc---CCC
Confidence 97643100000 0236678888899999999965 35778887642 2 23433 333 389
Q ss_pred ccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcc
Q 008168 491 MSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 491 ttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
++||||+|.|+|+++|++| .++.+|+++|+++++.++..
T Consensus 220 t~GaGD~f~aai~a~l~~g-------~~l~~A~~~A~~~~~~ai~~ 258 (291)
T 3mbh_A 220 YPGTGDTFTSVITGSLMQG-------DSLPMALDRATQFILQGIRA 258 (291)
T ss_dssp STTHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999998887764
No 59
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei}
Probab=99.66 E-value=1.1e-15 Score=157.27 Aligned_cols=166 Identities=9% Similarity=0.026 Sum_probs=118.0
Q ss_pred ccCcEEEEecccccccchHHHHHHHHHHHhhcC------CEEEEcCCCCCc--cccCchhHHHHHHHhhccCeEeecCHH
Q 008168 342 KEAKMFYFSTHSMLERNMKSTTLQAIKISKQFG------GIIFYDVNLPLP--LWQSGEETKMFIQQAWTLADVIEVTKQ 413 (575)
Q Consensus 342 ~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G------~~Vv~D~~~~~~--l~~~~~~~~~~l~~ll~~aDIl~~N~~ 413 (575)
..+|+|.++.++ +....+.+.++++..++.+ .+++|||+.... +|. .++..+.+.++++++|||+||..
T Consensus 75 ~~~daV~tG~l~--s~~~i~~v~~~l~~~k~~~~~~~~~~~vv~DPVm~d~G~~~~-~~~~~~~~~~Ll~~adiitPN~~ 151 (300)
T 3zs7_A 75 SNYRYILTGYIN--NVDIIGRIRDTLKEVRELREKEDKKLTFICDPVMGDDGIMYC-KKEVLDAYRELVPLADIVTPNYF 151 (300)
T ss_dssp GGCSEEEECCCC--CHHHHHHHHHHHHHHHHHHHHTTCCCEEEECCCC----------CTHHHHHHHHGGGCSEECCCHH
T ss_pred ccCCEEEECCCC--CHHHHHHHHHHHHHHHhhCcCcCCCceEEEccccccCCCeec-CHHHHHHHHHHhhhCCEecCCHH
Confidence 468887765332 3446777888888887655 799999976654 664 34556677779999999999999
Q ss_pred HHHHhhCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCc----E--EEEE-c------CCceeEeccc
Q 008168 414 ELEFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSK----V--HYYT-K------EDDGAVLGTE 480 (575)
Q Consensus 414 Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~G----a--~v~~-~------~~~~~v~a~~ 480 (575)
|++.|+|....+..+ ..++++.|++.|++.||||.|..| + +++. . +...+++.
T Consensus 152 Ea~~L~g~~~~~~~~------------~~~aa~~L~~~G~~~Vvvt~g~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~-- 217 (300)
T 3zs7_A 152 EASLLSGVTVNDLSS------------AILAADWFHNCGVAHVIIKSFREQENPTHLRFLYSVKEGSEAAVRRFSGVV-- 217 (300)
T ss_dssp HHHHHHSSCCCSHHH------------HHHHHHHHHHHTCSEEEEEEEC---CCSEEEEEEEECCSTTSCCEEEEEEE--
T ss_pred HHHHHhCCCCCCHHH------------HHHHHHHHHHhCCCEEEEecCcCCCCCceEEEEEeccccccCCCeEEEEEe--
Confidence 999999986543222 236778888889999999999987 2 3443 3 12223332
Q ss_pred CCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcc
Q 008168 481 DAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWS 536 (575)
Q Consensus 481 ~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~ 536 (575)
+.++ +|++|+||+|.|+|+++| +| +++.+|+++|+++...++..
T Consensus 218 -~~v~---~~~~GtGD~fsaal~a~l-~g-------~~~~~Av~~A~~~v~~~i~~ 261 (300)
T 3zs7_A 218 -PYHE---GRYTGTGDVFAACLLAFS-HS-------HPMDVAIGKSMAVLQELIIA 261 (300)
T ss_dssp -ECCS---SCBTTHHHHHHHHHHHHH-TT-------SCHHHHHHHHHHHHHHHHHH
T ss_pred -ccCC---CCCcCHHHHHHHHHHHHH-cC-------CCHHHHHHHHHHHHHHHHHH
Confidence 3443 489999999999999999 88 89999999999997666553
No 60
>1ekq_A Hydroxyethylthiazole kinase; alpha-beta, transferase; 1.50A {Bacillus subtilis} SCOP: c.72.1.2 PDB: 1ekk_A 1c3q_A 1esj_A 1esq_A*
Probab=99.44 E-value=8.9e-13 Score=133.60 Aligned_cols=189 Identities=11% Similarity=0.001 Sum_probs=115.0
Q ss_pred hhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhc--cCeEeecCHHHHH
Q 008168 339 DVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT--LADVIEVTKQELE 416 (575)
Q Consensus 339 ~~l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~--~aDIl~~N~~Ea~ 416 (575)
+.+..++++++..-. ..+...+.+.++++.+++.|++|++||...... ....+.+.++++ ++|||+||..|+.
T Consensus 54 ~~~~~a~~lvi~~G~-~~~~~~~~~~~~~~~a~~~~~pvVlDp~g~~~~----~~~~~~~~~ll~~~~~~vitPN~~E~~ 128 (272)
T 1ekq_A 54 DMAKIAGALVLNIGT-LSKESVEAMIIAGKSANEHGVPVILDPVGAGAT----PFRTESARDIIREVRLAAIRGNAAEIA 128 (272)
T ss_dssp HHHHHSSEEEEECTT-CCHHHHHHHHHHHHHHHHTTCCEEEECTTBTTB----HHHHHHHHHHHHHSCCSEEEECHHHHH
T ss_pred HHHHhCCEEEEECCC-CCHHHHHHHHHHHHHHHhcCCeEEEeCCCcCcc----cchHHHHHHHHccCCCeEECCCHHHHH
Confidence 456778998884221 233456778888999999999999998643211 011233446666 8999999999999
Q ss_pred HhhCCC-CCC-cccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccCh
Q 008168 417 FLCGIK-PTE-EFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSAS 494 (575)
Q Consensus 417 ~L~g~~-~~~-~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGA 494 (575)
.|+|.. ... .-|... .. +...+.++.|.+++...||+| |..+ ++++++....++. ... .+.|++|+
T Consensus 129 ~L~g~~~~~~~gvd~~~-~~----~~~~~aa~~l~~~~~~vVv~~-G~~~-~i~~~~~~~~~~~---~~~--~~~~ttGa 196 (272)
T 1ekq_A 129 HTVGVTDWLIKGVDAGE-GG----GDIIRLAQQAAQKLNTVIAIT-GEVD-VIADTSHVYTLHN---GHK--LLTKVTGA 196 (272)
T ss_dssp HHCC--------------------HHHHHHHHHHHHHHTSEEEEC-SSSE-EEECSSCEEEECC---CCG--GGGGSTTH
T ss_pred HHhCCCcccccCccCCC-CH----HHHHHHHHHHHHHcCCEEEEE-CCCC-EEEeCCEEEEEcC---CCc--cccCccCc
Confidence 999865 310 000000 00 002355666766544456656 9887 5555443333332 222 26799999
Q ss_pred hHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHH----HHHHHhcc---cccCCCCCCHHHHHHhh
Q 008168 495 GDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAID----CGVRDQWS---QARTLGYPPKEGMEEEV 553 (575)
Q Consensus 495 GDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~a----aAA~~v~~---~G~~~g~pt~eeve~~l 553 (575)
||+|.|.+.+.+++| .++.+|+++|++ |+..+... .|. +....+.++.+.
T Consensus 197 GD~lag~iaa~la~g-------~~~~~A~~~A~~~~~~A~~~a~~~~~~~g~--g~~~~~~id~l~ 253 (272)
T 1ekq_A 197 GCLLTSVVGAFCAVE-------ENPLFAAIAAISSYGVAAQLAAQQTADKGP--GSFQIELLNKLS 253 (272)
T ss_dssp HHHHHHHHHHHHTTC-------SSHHHHHHHHHHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHHHHhccCCCCC--ChHHHHHHHHHH
Confidence 999988877777778 899999999986 55555443 333 333444444443
No 61
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae}
Probab=99.39 E-value=3.3e-12 Score=141.77 Aligned_cols=159 Identities=13% Similarity=0.060 Sum_probs=112.7
Q ss_pred cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCC----ccccCchhHHHHHH-HhhccCeEeecCHHHHHH
Q 008168 343 EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPL----PLWQSGEETKMFIQ-QAWTLADVIEVTKQELEF 417 (575)
Q Consensus 343 ~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~----~l~~~~~~~~~~l~-~ll~~aDIl~~N~~Ea~~ 417 (575)
..+.|.++.. ++...+.+.++++..++.+.+|++||+... .+|. .+..+.+. .+++.+|||+||..|+..
T Consensus 91 ~~daIkiG~l---s~~~i~~v~~~l~~~~~~~~~vVlDPvm~a~~g~~l~~--~~~~~~l~~~Ll~~a~iitPN~~Ea~~ 165 (550)
T 3rm5_A 91 KCNVIKTGML---TAAAIEVLHEKLLQLGENRPKLVVDPVLVATSGSSLAG--KDIVSLITEKVAPFADILTPNIPECYK 165 (550)
T ss_dssp CCSEEEECSC---CHHHHHHHHHHHHHHGGGSCEEEECCCC---------C--TTHHHHHHHHTGGGCSEECCBHHHHHH
T ss_pred CCCEEEECCC---CHHHHHHHHHHHHHhcccCCCEEEecceecCCCCcCCC--HHHHHHHHHHhhCcceEEecCHHHHHH
Confidence 5788888643 555677777888777667889999998642 3332 33444454 789999999999999999
Q ss_pred hhCCC--CCCcccccccccccccCCcHHHHHHHhhcCC-CEEEEEcCCCc--------E--EEEE-cCCc-eeEecccCC
Q 008168 418 LCGIK--PTEEFDTKNNARSKFVHYEPEVIAPLWHENL-KVLFVTNGTSK--------V--HYYT-KEDD-GAVLGTEDA 482 (575)
Q Consensus 418 L~g~~--~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~-k~VVVT~G~~G--------a--~v~~-~~~~-~~v~a~~~~ 482 (575)
|+|.. ..+..+ ..+++++|.+.|. +.||||.|..+ + +++. .++. ..++. +
T Consensus 166 L~g~~~~i~~~~d------------~~~aa~~L~~~g~~~~VvvkgG~~~~~g~~~~~~~d~l~~~~~~~~~~~~~---~ 230 (550)
T 3rm5_A 166 LLGEERKVNGLQD------------IFQIAKDLAKITKCSNILVKGGHIPWNDEKEKYITDVLFLGAEQKFIIFKG---N 230 (550)
T ss_dssp HHSCCCCCCSSHH------------HHHHHHHHHHHHCCSCEEEEECC-------CCEEEEEEEETTTTEEEEEEE---E
T ss_pred HhCCCCCCCCHHH------------HHHHHHHHHHhCCCCEEEEeCCCCCcccCCCCeEEEEEEEcCCCeEEEEEe---c
Confidence 99974 221111 2366777887776 89999998763 3 4554 3332 23332 3
Q ss_pred CCCCcccCccChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHH
Q 008168 483 PLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCG 530 (575)
Q Consensus 483 ~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaA 530 (575)
.++ ++||+|+||+|.|+|++.|++| .++.+|+++|++.-
T Consensus 231 ~v~--~~~t~GtGD~fsaaiaa~La~G-------~~l~eAv~~A~~~v 269 (550)
T 3rm5_A 231 FVN--TTHTHGTGCTLASAIASNLARG-------YSLPQSVYGGIEYV 269 (550)
T ss_dssp CCC--CSCCBTHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHH
T ss_pred CcC--CCCCcChhHHHHHHHHHHHHcC-------CCHHHHHHHHHHHH
Confidence 343 6899999999999999999999 99999999999643
No 62
>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} PDB: 3hpd_A
Probab=98.88 E-value=1.2e-08 Score=102.92 Aligned_cols=169 Identities=14% Similarity=0.082 Sum_probs=103.3
Q ss_pred hhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhc-cCeEeecCHHHHHH
Q 008168 339 DVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT-LADVIEVTKQELEF 417 (575)
Q Consensus 339 ~~l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~-~aDIl~~N~~Ea~~ 417 (575)
+.+..+++++++. .+..+...+.+..+++.+++.++++++||...... ....+....++. .++||+||..|+..
T Consensus 52 ~~~~~~dalvi~~-G~~~~~~~~~~~~~~~~a~~~~~pvVlDpv~~~~~----~~~~~~~~~ll~~~~~vITPN~~E~~~ 126 (265)
T 1v8a_A 52 EMIRLADAVVINI-GTLDSGWRRSMVKATEIANELGKPIVLDPVGAGAT----KFRTRVSLEILSRGVDVLKGNFGEISA 126 (265)
T ss_dssp HHHHHCSEEEEEC-TTCCHHHHHHHHHHHHHHHHHTCCEEEECTTBTTB----HHHHHHHHHHHHHCCSEEEEEHHHHHH
T ss_pred HHHHHCCEEEEEE-CCCCHHHHHHHHHHHHHHHHcCCcEEEcCcccccc----ccCHHHHHHHHHhCCcEEcCCHHHHHH
Confidence 4567899999863 22233334566778888888999999998642211 011223334443 38999999999999
Q ss_pred hhCCCCCCc-ccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhH
Q 008168 418 LCGIKPTEE-FDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGD 496 (575)
Q Consensus 418 L~g~~~~~~-~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGD 496 (575)
|+|...... .+...... ....+.++++.+++...||+| |..+. +++++....++. ... ...+++|+||
T Consensus 127 L~g~~~~~~gvd~~~~~~----~~~~~aa~~la~~~~~~Vvlk-G~~d~-i~~~~~~~~~~~---g~~--~~~~~~GtGD 195 (265)
T 1v8a_A 127 LLGEEGKTRGVDSLEYGE----EEAKKLTMNAAREFNTTVAVT-GAVDY-VSDGRRTFAVYN---GHE--LLGRVTGTGC 195 (265)
T ss_dssp HHHHHC----------CH----HHHHHHHHHHHHHTTSEEEEE-SSSEE-EECSSCEEEECC---CCG--GGGGSTTHHH
T ss_pred HhCCcccccCcCcccccH----HHHHHHHHHHHHHhCcEEEEc-CCCcE-EEcCCEEEEEcC---CCc--CcCCccChhH
Confidence 998542100 00000000 002356677776665677777 87664 444433233322 111 1459999999
Q ss_pred HHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHH
Q 008168 497 GIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGV 531 (575)
Q Consensus 497 aF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA 531 (575)
+|.|.+.+.|++| .+ .+|+..|...-+
T Consensus 196 ~Lsg~iaa~lA~g-------~~-~~Aa~~a~~~~~ 222 (265)
T 1v8a_A 196 MVAALTGAFVAVT-------EP-LKATTSALVTFG 222 (265)
T ss_dssp HHHHHHHHHHTTS-------CH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-------CC-HHHHHHHHHHHH
Confidence 9999999999998 77 777777665433
No 63
>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer sandwich, unknown function; 2.50A {Streptococcus mutans}
Probab=98.68 E-value=1.1e-07 Score=97.94 Aligned_cols=155 Identities=12% Similarity=0.136 Sum_probs=95.1
Q ss_pred hhhccCcEEEEeccccc-ccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHH---h-h-ccCeEeecCH
Q 008168 339 DVLKEAKMFYFSTHSML-ERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQ---A-W-TLADVIEVTK 412 (575)
Q Consensus 339 ~~l~~ad~v~~sg~~l~-~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~---l-l-~~aDIl~~N~ 412 (575)
..+..++++.++- .+. ++...+.+.++++.++ .++++++|+.. ...+.. + + +.++||+||.
T Consensus 121 ~~~~~~dav~IG~-Gl~~~~~~~~~v~~~l~~~~-~~~pvVlDa~g-----------~~ll~~~~~l~L~~~~~viTPN~ 187 (311)
T 3bgk_A 121 EQITAADVVLMGP-GLAEDDLAQTTFDVVWQAIE-PKQTLIIDGSA-----------INLLAKRKPAIWPTKQIILTPHQ 187 (311)
T ss_dssp HHHHHCSEEEECT-TCCSSHHHHHHHHHHHHHCC-TTSEEEEETHH-----------HHHHHHCC-CCCSCSCEEEECCS
T ss_pred HHhccCCEEEEcC-CCCCCHHHHHHHHHHHHHcC-CCCeEEEeCCh-----------hhhhccChhhcCCCCCEEECCcH
Confidence 3455788888862 121 3333455666665544 58899999731 111211 1 3 4789999999
Q ss_pred HHHHHhhCCCCCCcccccccccccccCCc-HHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCc
Q 008168 413 QELEFLCGIKPTEEFDTKNNARSKFVHYE-PEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDM 491 (575)
Q Consensus 413 ~Ea~~L~g~~~~~~~d~~~~~~~~~~~~~-~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDt 491 (575)
.|+..|+|....+..+. . .+++++|.+ + .+|+..| .+.++++ ++..++.. ...+ ..++
T Consensus 188 ~E~~~L~g~~~~~~~~d-----------~~~~aa~~l~~-g--~~VvlkG-~~~~i~~-~~~~~~~~---~~~~--~~~t 246 (311)
T 3bgk_A 188 KEWERLSGLTIPEQIEA-----------ATQTALAHFPK-E--TILVAKS-HQTKIYQ-GQKIGHIQ---VGGP--YQAT 246 (311)
T ss_dssp CC-CTTTCCCSTTCCHH-----------HHHHHHTTSCT-T--CEEEECS-SSCEEEE-TTEEEEEC---CCCG--GGCS
T ss_pred HHHHHHhCCCCCcchhh-----------HHHHHHHHHhc-C--CEEEEeC-CCeEEEE-CCEEEEEC---CCCC--CCCC
Confidence 99999999764321100 1 244555554 4 4455555 5667776 43333332 2333 6789
Q ss_pred cChhHHHHHHHHHHH-Hc-CCCCCCCchhHHHHHHHHHHHHHHHhc
Q 008168 492 SASGDGIVAGIMRML-TV-QPHLITDKGYLVRTIKYAIDCGVRDQW 535 (575)
Q Consensus 492 tGAGDaF~AGfl~~L-~~-g~~~~~d~~sl~eAl~~A~aaAA~~v~ 535 (575)
+|+||+| +|+++++ ++ | .++.+|+.+|+.+.+.+..
T Consensus 247 ~GtGD~L-ag~iaa~lA~~g-------~~~~eA~~~A~~~~~~ag~ 284 (311)
T 3bgk_A 247 GGMGDTL-AGMIAGFVAQFH-------TDRFEVAAAAVFLHSYIAD 284 (311)
T ss_dssp TTHHHHH-HHHHHHHHHHCC-------SCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHH-HHHHHHHHHccC-------CCHHHHHHHHHHHHHHHHH
Confidence 9999997 6666665 58 8 8999999999877766433
No 64
>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like superfamily, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus faecalis} PDB: 2r3e_A
Probab=98.63 E-value=4.4e-07 Score=93.37 Aligned_cols=152 Identities=12% Similarity=0.060 Sum_probs=92.2
Q ss_pred hhccCcEEEEeccccc-ccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHH---hh--ccCeEeecCHH
Q 008168 340 VLKEAKMFYFSTHSML-ERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQ---AW--TLADVIEVTKQ 413 (575)
Q Consensus 340 ~l~~ad~v~~sg~~l~-~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~---ll--~~aDIl~~N~~ 413 (575)
.+..++++.++. .+. +....+.+.++++.++ .++++++|+.. ...+.. ++ +.++||+||..
T Consensus 108 ~~~~~dav~IG~-Gl~~~~~~~~~v~~~l~~~~-~~~pvVlDa~g-----------~~ll~~~~~~l~~~~~~viTPN~~ 174 (310)
T 2r3b_A 108 VVEQADVILIGP-GLGLDATAQQILKMVLAQHQ-KQQWLIIDGSA-----------ITLFSQGNFSLTYPEKVVFTPHQM 174 (310)
T ss_dssp HHHHCSEEEECT-TCCSSHHHHHHHHHHHHHCC-TTCEEEEETHH-----------HHHHHHTTCCCSSGGGEEEECCHH
T ss_pred HhccCCEEEEeC-CCCCCHHHHHHHHHHHHhcC-CCCcEEEcCCc-----------chhcccchhhhcCCCCEEEcCCHH
Confidence 455788888862 121 2233455566665544 58899999731 111111 22 46789999999
Q ss_pred HHHHhhCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccC
Q 008168 414 ELEFLCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSA 493 (575)
Q Consensus 414 Ea~~L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttG 493 (575)
|+..|+|....+..+ +. ..++++++ ++ +|+..| .+.++++ ++..++.. ...+ ..+++|
T Consensus 175 E~~~L~g~~~~~~~~---~~-------a~~aA~~l---g~--~VvlKG-~~~vi~~-~~~~~~~~---~g~~--~~~t~G 232 (310)
T 2r3b_A 175 EWQRLSHLPIEQQTL---AN-------NQRQQAKL---GS--TIVLKS-HRTTIFH-AGEPFQNT---GGNP--GMATGG 232 (310)
T ss_dssp HHHHHHCCCGGGCCH---HH-------HHHHHHHH---TS--EEEECS-TTCEEEC-SSSCEECC---CCCG--GGCSTT
T ss_pred HHHHHhCCCCCcccc---hH-------HHHHHHHh---Cc--EEEEeC-CceEEEE-CCEEEEEC---CCCC--CCCCCC
Confidence 999999976432110 00 02445555 43 455556 4566666 43333322 2233 578999
Q ss_pred hhHHHHHHHHHHH-HcCCCCCCCchhHHHHHHHHHHHHHHHh
Q 008168 494 SGDGIVAGIMRML-TVQPHLITDKGYLVRTIKYAIDCGVRDQ 534 (575)
Q Consensus 494 AGDaF~AGfl~~L-~~g~~~~~d~~sl~eAl~~A~aaAA~~v 534 (575)
+||+| +|+++++ ++| .++.+|+.+|+.+.+.+-
T Consensus 233 tGD~L-ag~Iaa~lA~g-------~~~~eA~~~A~~~~~~ag 266 (310)
T 2r3b_A 233 TGDTL-AGIIAGFLAQF-------KPTIETIAGAVYLHSLIG 266 (310)
T ss_dssp HHHHH-HHHHHHHHHHS-------CSSHHHHHHHHHHHHHHH
T ss_pred hHHHH-HHHHHHHHHcC-------CCHHHHHHHHHHHHHHHH
Confidence 99997 5566655 588 889999999977766643
No 65
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}
Probab=98.49 E-value=3.9e-06 Score=84.67 Aligned_cols=172 Identities=10% Similarity=0.055 Sum_probs=103.5
Q ss_pred hhhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhh-ccCeEeecCHHHHH
Q 008168 338 IDVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAW-TLADVIEVTKQELE 416 (575)
Q Consensus 338 ~~~l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll-~~aDIl~~N~~Ea~ 416 (575)
.+.++.++.+++.- ..+.+...+.+..+++.+++.+++|++||...... ....+....++ ..++||.||..|+.
T Consensus 53 ~e~~~~a~alvIn~-G~l~~~~~~~~~~a~~~a~~~~~PvVlDPVg~gas----~~r~~~~~~Ll~~~~~VItpN~~E~~ 127 (273)
T 3dzv_A 53 PQMFQQTSALVLNL-GHLSQEREQSLLAASDYARQVNKLTVVDLVGYGAS----DIRNEVGEKLVHNQPTVVKGNLSEMR 127 (273)
T ss_dssp HHHHTTCSEEEEEC-CSCCHHHHHHHHHHHHHHHHTTCCEEEECTTTTSC----HHHHHHHHHHHHTCCSEEEEEHHHHH
T ss_pred HHHHHHCCeEEEec-CCCChHHHHHHHHHHHHHHHcCCcEEEchhhcCCc----ccCHHHHHHHHhcCCcEECCCHHHHH
Confidence 35677889998873 22333345677888888999999999998643221 11112222222 37899999999999
Q ss_pred HhhCCCCCCc-ccc--cccccccccCCcHHHHHHHhhcCC-CEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCcc
Q 008168 417 FLCGIKPTEE-FDT--KNNARSKFVHYEPEVIAPLWHENL-KVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMS 492 (575)
Q Consensus 417 ~L~g~~~~~~-~d~--~~~~~~~~~~~~~e~~~~l~~~g~-k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDtt 492 (575)
.|+|...... -|. .......+. ...++++++.++.. ..|++|-+.. ++++++....++. ... ..-.++
T Consensus 128 ~L~g~~~~~~GVds~~~~~~~~~~~-d~~~aa~~la~~~~~~~VvlkG~~D--~i~dg~~~~~~~~---G~~--~~~~v~ 199 (273)
T 3dzv_A 128 TFCQLVSHGRGVDGSPLDQSEEAIE-ELIQALRQQTQKFPQTVFLATGIQD--VLVSQEQVIVLQN---GVP--ELDCFT 199 (273)
T ss_dssp HHTTCCCC-------CGGGSHHHHH-HHHHHHHHHHHHSTTCEEEEESSSE--EEECSSCEEEECC---CCG--GGGSST
T ss_pred HHhCCcccccccccccccchhhhhH-HHHHHHHHHHHHhCCeEEEEECCee--EEEcCCEEEEeCC---CCc--ccCCcC
Confidence 9999753210 000 000000000 01345666766554 6778875432 4444433222221 111 134679
Q ss_pred ChhHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHH
Q 008168 493 ASGDGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDC 529 (575)
Q Consensus 493 GAGDaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aa 529 (575)
|.||++.|.+.+.|++| .++.+|+..|...
T Consensus 200 GtGc~Ls~~Iaa~lA~g-------~~~~~Aa~~A~~~ 229 (273)
T 3dzv_A 200 GTGDLVGALVAALLGEG-------NAPMTAAVAAVSY 229 (273)
T ss_dssp THHHHHHHHHHHHHHHT-------CCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhCC-------CCHHHHHHHHHHH
Confidence 99999999999999998 7888888877654
No 66
>3drw_A ADP-specific phosphofructokinase; AMP, GLYC kinase, magnesium, metal-binding, transferase, structural G PSI-2, protein structure initiative; HET: AMP; 1.90A {Pyrococcus horikoshii} PDB: 1u2x_A
Probab=98.42 E-value=4.3e-06 Score=89.93 Aligned_cols=166 Identities=16% Similarity=0.094 Sum_probs=99.6
Q ss_pred EEecCChHHHHHHHHHHcCC-CeEEEEEeCCChHHHHHHHHHHhCCCccce--------EE----EcCCCCceEEEEEEc
Q 008168 247 IRSPGGCTGSAAIALARLGG-KVAFMGKLGDDEYGQAMLYYMNVNNVQTRS--------VR----IDAKRPTAVSQMKIG 313 (575)
Q Consensus 247 ~~~~GG~a~NvA~aLarLG~-~v~lig~VG~D~~G~~l~~~L~~~GIdt~~--------v~----~~~~~~T~~~~i~vd 313 (575)
....||.|.-+|..|+++|. +|.+++.+++.. +.+.| ..+|-.-. +. +.++.+.-+-+|+-.
T Consensus 113 ~~~~GGnA~imAn~La~lg~~~Vi~~~p~~sk~----~~~ll-~~~i~~p~~e~g~l~l~~~~ea~~~~~~~~iH~I~Ey 187 (474)
T 3drw_A 113 EERLGGQAGIIANTLAGLKIRKVIAYTPFLPKR----LAELF-KKGVLYPVVENGELQFKPIQEAYREGDPLKINRIFEF 187 (474)
T ss_dssp EEEEESHHHHHHHHHHHTTCSEEEECCSCCCHH----HHTTS-CTTEEEEEESSSSEEEEEGGGCCCTTCCCCEEEEEEE
T ss_pred eEecCChHHHHHHHHHHcCCCcEEEecCcCCHH----HHHhc-CCcceeecccCCceeecCchhhhccCCCCCcEEEEEc
Confidence 56899999999999999999 588888777643 33444 22221110 00 000112233333333
Q ss_pred CCC--------------CeEEEEecCCccc-cCC-ccccc---hhhhccCcEEEEeccccccc-----ch----HHHHHH
Q 008168 314 KRG--------------RLRMTCVKPCAED-ALT-KSEIN---IDVLKEAKMFYFSTHSMLER-----NM----KSTTLQ 365 (575)
Q Consensus 314 ~~G--------------er~~~~~~~ga~~-~lt-~~~i~---~~~l~~ad~v~~sg~~l~~~-----~~----~e~~~~ 365 (575)
+.| .+++++.....+. .+. .+++. .+..+.+|.++++|+-++.. .. .+.+.+
T Consensus 188 ~~G~~~~~~~~~~~aPraNRfI~s~D~~N~~~l~~~e~f~~~l~e~~~~~d~~vLSGlq~m~~~y~dg~~~~~~l~~~~e 267 (474)
T 3drw_A 188 RKGLKFKLGDETIEIPNSGRFIVSARFESISRIETREDIKPFLGEIGKEVDGAIFSGYQGLRTKYSDGKDANYYLRRAKE 267 (474)
T ss_dssp CTTCEEESSSCEEECCSCEEEEEEECCSGGGCCSCCTTTGGGHHHHHHHCSEEEECCGGGCCSBCTTSCBHHHHHHHHHH
T ss_pred CCCCeeecCCceEEccCCCeEEEEcCCCCHHhccccHHHHHHHHHhhcCCCEEEEeccccccccccccccHHHHHHHHHH
Confidence 333 3344444333333 333 23332 12223699999999876654 11 233345
Q ss_pred HHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCC
Q 008168 366 AIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGI 421 (575)
Q Consensus 366 ~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~ 421 (575)
.++..+..+++|-|...... +.+-....+..+++++|.|-+|++|+..+++.
T Consensus 268 ~i~~l~~~~~~iH~E~As~~----~~~l~~~i~~~i~p~vDSlGmNEqELa~l~~~ 319 (474)
T 3drw_A 268 DIIEFKEKDVKIHVEFASVQ----DRKLRKKIITNILPFVDSVGIDEAEIAQILSV 319 (474)
T ss_dssp HHHHHHHTTCEEEEECCCCS----CHHHHHHHHHHTGGGSSEEEEEHHHHHHHHHH
T ss_pred HHHHhcCCCCeEEEEeCccc----cHHHHHHHHHHhcccccccccCHHHHHHHHHH
Confidence 55666678999999975432 33445566778999999999999999988764
No 67
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=98.22 E-value=5.1e-06 Score=90.84 Aligned_cols=157 Identities=10% Similarity=-0.004 Sum_probs=95.8
Q ss_pred hhhccCcEEEEecccccccchHHHHHHHHH-HHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHH
Q 008168 339 DVLKEAKMFYFSTHSMLERNMKSTTLQAIK-ISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEF 417 (575)
Q Consensus 339 ~~l~~ad~v~~sg~~l~~~~~~e~~~~~l~-~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~ 417 (575)
+.+..++++.++.-...+ +...++++ .+++.++++++|+.... +. . .+.+ ...+..+||+||..|+..
T Consensus 316 ~~~~~~davviGpGlg~~----~~~~~~~~~~l~~~~~pvVlDadgl~-~l--~---~~ll-~~~~~~~vlTPN~~E~~~ 384 (502)
T 3rss_A 316 ELSKDVDVVAIGPGLGNN----EHVREFVNEFLKTLEKPAVIDADAIN-VL--D---TSVL-KERKSPAVLTPHPGEMAR 384 (502)
T ss_dssp HHHTTCSEEEECTTCCCS----HHHHHHHHHHHHHCCSCEEECHHHHH-TC--C---HHHH-HHCSSCEEECCCHHHHHH
T ss_pred HHhccCCEEEEeCCCCCC----HHHHHHHHHHHHhcCCCEEEeCcccc-hh--c---HHHH-hccCCCEEEeCCHHHHHH
Confidence 456789999987321111 12223333 34566899999974211 10 0 1222 223568999999999999
Q ss_pred hhCCCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHH
Q 008168 418 LCGIKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDG 497 (575)
Q Consensus 418 L~g~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDa 497 (575)
|+|....+. ... .+.++++.+++ ..+||..|. +.++++++ ..++.. ...+ ..+|+|+||+
T Consensus 385 L~g~~~~~~-----------~~d-~~aa~~la~~~-~~~VvlKG~-~~vi~~~~-~~~~~~---~g~~--~~at~GsGD~ 444 (502)
T 3rss_A 385 LVKKTVGDV-----------KYN-YELAEEFAKEN-DCVLVLKSA-TTIVTDGE-KTLFNI---TGNT--GLSKGGSGDV 444 (502)
T ss_dssp HHTCCHHHH-----------TTC-HHHHHHHHHHH-TSEEEECSS-SEEEECSS-CEEEEC---CCCG--GGSSTTHHHH
T ss_pred HhCCCccch-----------HHH-HHHHHHHHHHc-CCEEEEeCC-CeEEEcCC-EEEEEC---CCCC--ccccCCchHH
Confidence 999653210 011 35566666543 235555565 45566655 333322 1222 5789999998
Q ss_pred HHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHH
Q 008168 498 IVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRD 533 (575)
Q Consensus 498 F~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~ 533 (575)
|.|.+.+.|++| .++.+|+.+|+..-+.+
T Consensus 445 Lag~iaa~lA~g-------~~~~~Aa~~A~~~hg~A 473 (502)
T 3rss_A 445 LTGMIAGFIAQG-------LSPLEASTVSVYLHGFA 473 (502)
T ss_dssp HHHHHHHHHHTT-------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-------CCHHHHHHHHHHHHHHH
Confidence 877777777888 89999999998776665
No 68
>3rpz_A ADP/ATP-dependent NAD(P)H-hydrate dehydratase; structural genomics, PSI-biology; HET: AMP NPW; 1.51A {Bacillus subtilis} PDB: 3rph_A* 3rq2_A* 3rq5_A* 3rq6_A* 3rq8_A* 3rqh_A* 3rqq_A* 3rqx_A* 1kyh_A
Probab=98.20 E-value=1.5e-05 Score=80.77 Aligned_cols=172 Identities=10% Similarity=0.024 Sum_probs=100.0
Q ss_pred hccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhC
Q 008168 341 LKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCG 420 (575)
Q Consensus 341 l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g 420 (575)
+..++++.++. .+.. .+...++++.+.+.+.++++|...... . .+ ......+||+||..|+..|+|
T Consensus 96 l~~~davviGP--Glg~--~~~~~~~~~~~l~~~~p~VlDAdal~~--~-------~l-~~~~~~~vlTPN~~E~~~L~g 161 (279)
T 3rpz_A 96 EETYRAIAIGP--GLPQ--TESVQQAVDHVLTADCPVILDAGALAK--R-------TY-PKREGPVILTPHPGEFFRMTG 161 (279)
T ss_dssp SSCCSEEEECT--TCCC--CHHHHHHHHHHTTSSSCEEECGGGCCS--C-------CC-CCCSSCEEECCCHHHHHHHHC
T ss_pred ccCCCEEEECC--CCCC--CHHHHHHHHHHHhhCCCEEEECCccch--h-------hh-hhccCCEEEecCHHHHHHHhC
Confidence 46789998862 1221 123355666666678899999752211 0 00 012457899999999999999
Q ss_pred CCCCCcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhHHHHH
Q 008168 421 IKPTEEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGDGIVA 500 (575)
Q Consensus 421 ~~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGDaF~A 500 (575)
....+.. +...+.++++.+.... +||--|. +.+++++++..++.. ...+ ...++|+||++.|
T Consensus 162 ~~~~~~~-----------~d~~~aa~~la~~~~~-~VvlKG~-~~vi~~~~g~~~~~~---~g~~--~~at~GtGD~Lag 223 (279)
T 3rpz_A 162 VPVNELQ-----------KKRAEYAKEWAAQLQT-VIVLKGN-QTVIAFPDGDCWLNP---TGNG--ALAKGGTGDTLTG 223 (279)
T ss_dssp CCHHHHT-----------TSHHHHHHHHHHHHTS-EEEECST-TCEEECTTSCEEECC---CCCG--GGCSTTHHHHHHH
T ss_pred CCccchH-----------HHHHHHHHHHHHHcCe-EEEEeCC-CcEEECCCceEEEeC---CCCC--CCCCCChHHHHHH
Confidence 7532110 0023556666654323 4444454 455666554443322 1222 5789999998755
Q ss_pred HHHHHHHcCCCCCCCchhHHHHHHHHHH----HHHHHhcccccCCCCCCHHHHHHhh
Q 008168 501 GIMRMLTVQPHLITDKGYLVRTIKYAID----CGVRDQWSQARTLGYPPKEGMEEEV 553 (575)
Q Consensus 501 Gfl~~L~~g~~~~~d~~sl~eAl~~A~a----aAA~~v~~~G~~~g~pt~eeve~~l 553 (575)
.+.+.|++| .++.+|+.+|.. ||-......|.. ++ ...+|-..|
T Consensus 224 ~iaa~lA~g-------~~~~~A~~~a~~lh~~Ag~~a~~~~g~~-~~-~a~dl~~~l 271 (279)
T 3rpz_A 224 MILGMLCCH-------EDPKHAVLNAVYLHGACAELWTDEHSAH-TL-LAHELSDIL 271 (279)
T ss_dssp HHHHHHHHC-------SSHHHHHHHHHHHHHHHHHHHHHHSCTT-SC-CHHHHHHHH
T ss_pred HHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHHhcCCC-Cc-CHHHHHHHH
Confidence 555556688 889999998864 444444455543 33 445554443
No 69
>1ua4_A Glucokinase, ADP-dependent glucokinase; transferase; HET: GLC BGC AMP; 1.90A {Pyrococcus furiosus} SCOP: c.72.1.3
Probab=98.10 E-value=3.9e-05 Score=82.52 Aligned_cols=160 Identities=11% Similarity=0.086 Sum_probs=97.9
Q ss_pred ecCChHHHHHHHHHHcCCCeEE--EEEeCCChHHHHHHHHHHhCCCccceEEE-------------cCCCCceEEEEEEc
Q 008168 249 SPGGCTGSAAIALARLGGKVAF--MGKLGDDEYGQAMLYYMNVNNVQTRSVRI-------------DAKRPTAVSQMKIG 313 (575)
Q Consensus 249 ~~GG~a~NvA~aLarLG~~v~l--ig~VG~D~~G~~l~~~L~~~GIdt~~v~~-------------~~~~~T~~~~i~vd 313 (575)
..||.+..+|..|+.+|.++.+ ++.+|.. +.+.|...+|.. ... .......+-+|+-.
T Consensus 109 ~~GGnA~imAn~la~lg~~~vl~~~~~l~~~-----~~~lf~~~~i~~--p~~~~~~~~l~~~~e~~~~~~~~iH~I~Ef 181 (455)
T 1ua4_A 109 RMGGQAGIMANLLGGVYGVPVIVHVPQLSRL-----QANLFLDGPIYV--PTLENGEVKLIHPKEFSGDEENCIHYIYEF 181 (455)
T ss_dssp EEESHHHHHHHHHTTTTCCCEEECCSCCCHH-----HHTTSCSSSEEE--EEEETTEEEEECGGGCSCCCCCCEEEEEEE
T ss_pred ccCCcHHHHHHHHHHcCCCEEEEeCCCCCHH-----HHHhcCCCCeEe--ecccCCccccccchhhccCCCCCceEEEEc
Confidence 8999999999999999999987 7777653 444554233432 101 00223445555555
Q ss_pred CCCC----------eEEEEecCCccccCC-ccccchhhh----ccCcEEEEecccccccch----HHHHHHHHHHHhhcC
Q 008168 314 KRGR----------LRMTCVKPCAEDALT-KSEINIDVL----KEAKMFYFSTHSMLERNM----KSTTLQAIKISKQFG 374 (575)
Q Consensus 314 ~~Ge----------r~~~~~~~ga~~~lt-~~~i~~~~l----~~ad~v~~sg~~l~~~~~----~e~~~~~l~~ak~~G 374 (575)
+.|. ++|++.....+..+. .+++ .+.+ ..+|.++++|+.++...+ .+..++.++.....+
T Consensus 182 ~~G~~~~~~~aPraNRfI~s~D~~n~~l~~~e~f-~~~l~e~~~~~dl~vlSG~q~l~~~~~~~~~~~~l~~i~~L~~~~ 260 (455)
T 1ua4_A 182 PRGFRVFEFEAPRENRFIGSADDYNTTLFIREEF-RESFSEVIKNVQLAILSGLQALTKENYKEPFEIVKSNLEVLNERE 260 (455)
T ss_dssp CTTCEETTEECSSCEEEEEECCSSGGGTCCCGGG-STTHHHHGGGCSEEEECCGGGCCTTTCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCeecceeccccceeEEecCCCcccCcccHHH-HHHHHhhccCCcEEEEechhcccccchHHHHHHHHHHHHHhcCCC
Confidence 5554 344443333333332 2223 2233 449999999987665432 222222222336678
Q ss_pred CEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCC
Q 008168 375 GIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGI 421 (575)
Q Consensus 375 ~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~ 421 (575)
++|.|++.... +.+-....+ .+++++|.|-+|++|+..+++.
T Consensus 261 ~~iH~ElAs~~----~~~~~~~i~-~ilp~vDSlGmNE~EL~~l~~~ 302 (455)
T 1ua4_A 261 IPVHLEFAFTP----DEKVREEIL-NVLGMFYSVGLNEVELASIMEI 302 (455)
T ss_dssp CCEEEECCCCC----CHHHHHHHH-HHGGGCSEEEECHHHHHHHHHH
T ss_pred ceEEEEeCCcc----CHHHHHHHH-hhhccCcccccCHHHHHHHHHH
Confidence 99999986433 233345666 8999999999999999888653
No 70
>1gc5_A ADP-dependent glucokinase; ALFA/beta sandwichs, induced-fitting, transferase; HET: ADP; 2.30A {Thermococcus litoralis} SCOP: c.72.1.3
Probab=97.73 E-value=0.00037 Score=74.95 Aligned_cols=159 Identities=9% Similarity=0.060 Sum_probs=94.4
Q ss_pred ecCChHHHHHHHHHHcCCCeEE--EEEeCCChHHHHHHHHHHhCCCccceEEEcC-------------CCCceEEEEEEc
Q 008168 249 SPGGCTGSAAIALARLGGKVAF--MGKLGDDEYGQAMLYYMNVNNVQTRSVRIDA-------------KRPTAVSQMKIG 313 (575)
Q Consensus 249 ~~GG~a~NvA~aLarLG~~v~l--ig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~-------------~~~T~~~~i~vd 313 (575)
+.||.+.-+|..|+.+|.++.+ ++.+|. .+.+.|...+|.. ..+.. +...-+-+|+-.
T Consensus 117 ~mGGnAgimAn~la~lg~~~vl~~~~~~s~-----~~~~l~~~~~i~~--p~~~~g~l~~~~~~ea~~~~~~~iH~I~Ey 189 (467)
T 1gc5_A 117 RIGGQAGIMANLLGGVYRIPTIVHVPQNPK-----LQAELFVDGPIYV--PVFEGNKLKLVHPKDAIAEEEELIHYIYEF 189 (467)
T ss_dssp EEESHHHHHHHHHHHTSCCCEEECCSCCCH-----HHHTTSCSSSEEE--EEECSSCEEEECGGGSCCSCCCCEEEEEEE
T ss_pred ccCccHHHHHHHHHhcCCCEEEEcCCCCCH-----HHHHhcCCCCeee--eeccCCceecccchhhccCCCCcceEEEEc
Confidence 9999999999999999999877 555554 3455554233321 11111 122333344444
Q ss_pred CCCC----------eEEEEecCCccccCCc-cccc---hhhhccCcEEEEeccccccc-----chHH-H---HHHHHHHH
Q 008168 314 KRGR----------LRMTCVKPCAEDALTK-SEIN---IDVLKEAKMFYFSTHSMLER-----NMKS-T---TLQAIKIS 370 (575)
Q Consensus 314 ~~Ge----------r~~~~~~~ga~~~lt~-~~i~---~~~l~~ad~v~~sg~~l~~~-----~~~e-~---~~~~l~~a 370 (575)
+.|. ++|++.+...+..+.. +++. .+....+|.++++|+.++.. ...+ . +.+.+...
T Consensus 190 ~~G~~~~~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~e~~~~~dl~vlSG~q~l~~~y~~g~~~~~~l~~~~~~l~~l 269 (467)
T 1gc5_A 190 PRGFQVFDVQAPRENRFIANADDYNARVYMRREFREGFEEITRNVELAIISGLQVLKEYYPDGTTYKDVLDRVESHLNIL 269 (467)
T ss_dssp CSSCEETTEECSSCEEEEEECCSSTTTTCCCHHHHHSHHHHHTTCSEEEECCGGGCCSBCTTSCBHHHHHHHHHHHHHHH
T ss_pred CCCCeecceeccCCceEEEecCCCCccccccHHHHHHHHhhccCCCEEEEechhcccCccCCchhHHHHHHHHHHHHHhh
Confidence 4443 3455443333333322 2221 12234599999999866654 2122 2 22233333
Q ss_pred hhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhh
Q 008168 371 KQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 371 k~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~ 419 (575)
...+++|-|...... +.+-....+ .+++++|.|-+|++|+..++
T Consensus 270 ~~~~~~iH~E~As~~----~~~l~~~i~-~ilp~vDSlGmNEqELa~l~ 313 (467)
T 1gc5_A 270 NRYNVKSHFEFAYTA----NRRVREALV-ELLPKFTSVGLNEVELASIM 313 (467)
T ss_dssp HHTTCEEEEECCCCC----CHHHHHHHH-HHGGGCSEEEECHHHHHHHH
T ss_pred cCCCCeEEEEECCcc----cHHHHHHHH-hhccccccCccCHHHHHHHH
Confidence 557899999975432 234455667 99999999999999998654
No 71
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=97.68 E-value=0.0012 Score=72.77 Aligned_cols=168 Identities=16% Similarity=0.082 Sum_probs=97.3
Q ss_pred hhhcc-CcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhc--cCeEeecCHHHH
Q 008168 339 DVLKE-AKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWT--LADVIEVTKQEL 415 (575)
Q Consensus 339 ~~l~~-ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~--~aDIl~~N~~Ea 415 (575)
+..+. ++.++++-- .+.+ .+.+..+++.+++.+++|++||...... ....+....+++ .++||.+|..|+
T Consensus 301 e~~~~~~~alvin~G-~l~~--~~~~~~a~~~a~~~~~PvVlDPVg~~a~----~~r~~~~~~Ll~~~~~~vItpN~~E~ 373 (540)
T 3nl6_A 301 DLAAIPHATLLLNTG-SVAP--PEMLKAAIRAYNDVKRPIVFDPVGYSAT----ETRLLLNNKLLTFGQFSCIKGNSSEI 373 (540)
T ss_dssp HHTTSTTCEEEEESS-CSCC--HHHHHHHHHHHHTTTCCEEEECTTCTTS----HHHHHHHHHHTTSCCCSEEEECHHHH
T ss_pred HHHhccCCeEEEeCC-CCCH--HHHHHHHHHHHHHcCCCEEEChHHhhcc----cccHHHHHHHHhhCCCeEECCCHHHH
Confidence 45666 899988732 2232 7788888888999999999999654321 112344556776 789999999999
Q ss_pred HHhhCCCC-C-CcccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEc-------------------CCce
Q 008168 416 EFLCGIKP-T-EEFDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTK-------------------EDDG 474 (575)
Q Consensus 416 ~~L~g~~~-~-~~~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~-------------------~~~~ 474 (575)
..|+|... . ..-|..... + .....++++++..+.-..|++| |+. -+++++ +...
T Consensus 374 ~~L~g~~~~~~~GVds~~~~-~--~~d~~~aA~~lA~~~~~vVvlk-G~~-D~I~dg~~~~~~~~~~~~~~~~~~~~~~~ 448 (540)
T 3nl6_A 374 LGLAELNKERMKGVDASSGI-S--NELLIQATKIVAFKYKTVAVCT-GEF-DFIADGTIEGKYSLSKGTNGTSVEDIPCV 448 (540)
T ss_dssp HHHTTC---------------C--CHHHHHHHHHHHHHTTSEEEEC-SSS-EEEEECCGGGBCCSSSCCSSCCTTSSCEE
T ss_pred HHHhCCCccccccccccccc-C--HHHHHHHHHHHHHHhCCEEEEc-CCC-eEEECCCccccccccccccccccCCccEE
Confidence 99998652 0 000000000 0 0002355666666554566665 432 234444 1111
Q ss_pred eEecccCCCCCCcccCccChhHHHHHHHHHHHHcCCCCCCCch---hHHHHHHHHHHH
Q 008168 475 AVLGTEDAPLTPFTSDMSASGDGIVAGIMRMLTVQPHLITDKG---YLVRTIKYAIDC 529 (575)
Q Consensus 475 ~v~a~~~~~v~~~vVDttGAGDaF~AGfl~~L~~g~~~~~d~~---sl~eAl~~A~aa 529 (575)
.+.. -.++ ..-.++|.||++.+.+.+.+..+ . ++.+|+..|...
T Consensus 449 ~~~~---G~~~-~m~~vtGtGc~Lsg~Iaa~la~~-------~~~~~~~~Aa~~a~~~ 495 (540)
T 3nl6_A 449 AVEA---GPIE-IMGDITASGCSLGSTIACMIGGQ-------PSEGNLFHAVVAGVML 495 (540)
T ss_dssp EEEC---SCCG-GGGSSTTHHHHHHHHHHHHHHTC-------CTTCBHHHHHHHHHHH
T ss_pred EECC---CChh-hccCccCchHHHHHHHHHHHhcC-------cCCCCHHHHHHHHHHH
Confidence 2221 1111 12347999999988887778877 4 467776666543
No 72
>1l2l_A ADP-dependent glucokinase; ADP glucokinase APO, transferase; 2.00A {Pyrococcus horikoshii} SCOP: c.72.1.3
Probab=97.64 E-value=0.00032 Score=75.36 Aligned_cols=159 Identities=12% Similarity=0.057 Sum_probs=93.2
Q ss_pred ecCChHHHHHHHHHHcCCCeEE--EEEeCCChHHHHHHHHHHhCCCccceEEEcC-------------CCCceEEEEEEc
Q 008168 249 SPGGCTGSAAIALARLGGKVAF--MGKLGDDEYGQAMLYYMNVNNVQTRSVRIDA-------------KRPTAVSQMKIG 313 (575)
Q Consensus 249 ~~GG~a~NvA~aLarLG~~v~l--ig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~-------------~~~T~~~~i~vd 313 (575)
+.||.+.-+|..|+.+|.++.+ ++.+|. .+.+.|...+|..-. +.. +...-+-+|+-.
T Consensus 112 ~mGGnA~imAn~la~lg~~~vl~~~~~~s~-----~~~~l~~~~~i~~p~--~~~g~l~l~~~~e~~~~~~~~iH~I~Ey 184 (457)
T 1l2l_A 112 RMGGQVGIMANLLGGVYGIPVIAHVPQLSE-----LQASLFLDGPIYVPT--FERGELRLIHPREFRKGEEDCIHYIYEF 184 (457)
T ss_dssp EEESHHHHHHHHHTTTSCCCEEECCSSCCH-----HHHHTSCSSSEEEEC--------CEECGGGC----CCCEEECCEE
T ss_pred ccCchHHHHHHHHHHcCCCEEEEcCCCCCH-----HHHHhcCCCCeEeee--ccCCceeccCchhhccCCCCcceEEEEc
Confidence 9999999999999999999877 555553 345555423332110 000 012223333333
Q ss_pred CCC----------CeEEEEecCCccccCCc-cccc---hhhhccCcEEEEecccccccch----HHHHHHHHHHHhhcCC
Q 008168 314 KRG----------RLRMTCVKPCAEDALTK-SEIN---IDVLKEAKMFYFSTHSMLERNM----KSTTLQAIKISKQFGG 375 (575)
Q Consensus 314 ~~G----------er~~~~~~~ga~~~lt~-~~i~---~~~l~~ad~v~~sg~~l~~~~~----~e~~~~~l~~ak~~G~ 375 (575)
+.| .+++++.....+..+.. +++. .+....+|.++++|+.++.... .+...+.++.....++
T Consensus 185 ~~G~~~~~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~e~~~~~d~~vlSG~q~l~~~~~~~~~~~~~~~i~~L~~~~~ 264 (457)
T 1l2l_A 185 PRNFKVLDFEAPRENRFIGAADDYNPILYVREEWIERFEEIAKRSELAIISGLHPLTQENHGKPIKLVREHLKILNDLGI 264 (457)
T ss_dssp CTTCEETTEECSSCEEEEEEECSSGGGTCCCHHHHHSHHHHHTTCSEEEEECCTTCCTTTCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCeecceecCCCCeEEEEcCCCCCCCcccHHHHHHHHhhccCCCEEEEeccccccccchhhhHHHHHHHHHHhcCCCC
Confidence 333 34455444333333332 2221 1223459999999987765411 1122233334467889
Q ss_pred EEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhh
Q 008168 376 IIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLC 419 (575)
Q Consensus 376 ~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~ 419 (575)
+|-|...... +.+-....+ .+++++|.|-+|++|+..++
T Consensus 265 ~iH~E~As~~----~~~l~~~i~-~ilp~vDSlGmNEqELa~l~ 303 (457)
T 1l2l_A 265 RAHLEFAFTP----DEVVRLEIV-KLLKHFYSVGLNEVELASVV 303 (457)
T ss_dssp EEEEECCCCS----SHHHHHHHH-HHGGGCSEEEECHHHHHHHH
T ss_pred eEEEEECCcc----cHHHHHHHH-hhccccccCccCHHHHHHHH
Confidence 9999975432 234445667 99999999999999998854
No 73
>3hpd_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, ATP-binding, M metal-binding, nucleotide-binding, thiamine biosynthesis; 1.85A {Pyrococcus horikoshii}
Probab=97.59 E-value=0.00089 Score=67.00 Aligned_cols=154 Identities=14% Similarity=0.095 Sum_probs=82.3
Q ss_pred hhhccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhh-ccCeEeecCHHHHHH
Q 008168 339 DVLKEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAW-TLADVIEVTKQELEF 417 (575)
Q Consensus 339 ~~l~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll-~~aDIl~~N~~Ea~~ 417 (575)
+..+.++.++++-- .+++...+.+..+++.+.+.|++++|||...... ....+...+++ .+++||.+|..|+..
T Consensus 52 e~~~~a~al~iNiG-tl~~~~~~~m~~A~~~A~~~~~PvVLDPVg~gas----~~R~~~~~~ll~~~~~vIrgN~sEi~~ 126 (265)
T 3hpd_A 52 EMIRLADAVVINIG-TLDSGWRRSMVKATEIANELGKPIVLDPVGAGAT----KFRTRVSLEILSRGVDVLKGNFGEISA 126 (265)
T ss_dssp HHHHHCSEEEEECT-TCCHHHHHHHHHHHHHHHHHTCCEEEECTTBTTB----HHHHHHHHHHHHHCCSEEEEEHHHHHH
T ss_pred HHHHHCCeEEEECC-CCChHHHHHHHHHHHHHHHcCCCEEEcCCCCCCc----HHHHHHHHHHHhcCCcEEcCCHHHHHH
Confidence 45567888888732 2344456677788889999999999998643221 00112223332 368999999999999
Q ss_pred hhCCCCCCc-ccccccccccccCCcHHHHHHHhhcCCCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChhH
Q 008168 418 LCGIKPTEE-FDTKNNARSKFVHYEPEVIAPLWHENLKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASGD 496 (575)
Q Consensus 418 L~g~~~~~~-~d~~~~~~~~~~~~~~e~~~~l~~~g~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAGD 496 (575)
|+|...... -|..... .+...+.++.+.++.-..|++| |+. -++.+++....+.. ..|. .-..+|.||
T Consensus 127 L~g~~~~~~gvds~~~~----~~d~~~~a~~lA~~~~~vVvlk-G~~-d~I~dg~~~~~~~~--G~~~---m~~vtGtGc 195 (265)
T 3hpd_A 127 LLGEEGKTRGVDSLEYG----EEEAKKLTMNAAREFNTTVAVT-GAV-DYVSDGRRTFAVYN--GHEL---LGRVTGTGC 195 (265)
T ss_dssp HHHHHC----------C----HHHHHHHHHHHHHHTTSEEEEE-SSS-EEEECSSCEEEECC--CCGG---GGGSTTHHH
T ss_pred HhcccCCCCCccCcccc----HHHHHHHHHHHHHHhCCEEEEe-CCC-eEEEcCCEEEEECC--CChH---hhcCCccch
Confidence 987432110 0000000 0001245555555443456665 442 34444433222221 0111 223489999
Q ss_pred HHHHHHHHHHHcC
Q 008168 497 GIVAGIMRMLTVQ 509 (575)
Q Consensus 497 aF~AGfl~~L~~g 509 (575)
++. |++++++..
T Consensus 196 ~Ls-g~iaa~lA~ 207 (265)
T 3hpd_A 196 MVA-ALTGAFVAV 207 (265)
T ss_dssp HHH-HHHHHHHTT
T ss_pred HHH-HHHHHHHhc
Confidence 864 555555544
No 74
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, , structural genomics, protein structure initiative; 2.60A {Helicobacter pylori}
Probab=96.12 E-value=0.061 Score=58.16 Aligned_cols=170 Identities=13% Similarity=0.051 Sum_probs=93.2
Q ss_pred ccCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeecCHHHHHHhhCC
Q 008168 342 KEAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEVTKQELEFLCGI 421 (575)
Q Consensus 342 ~~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~N~~Ea~~L~g~ 421 (575)
..++.+.++.-...++. + +..+++ .. ++++|.. .++. . .+..+++...||+||..|+..|+|.
T Consensus 291 ~~~~a~~iGPGlG~~~~--~-l~~~l~----~~-p~VlDAD---aL~~-----~-~~~~~~~~~~VlTPh~~E~~rL~g~ 353 (475)
T 3k5w_A 291 NLLSAFALGMGLENIPK--D-FNRWLE----LA-PCVLDAG---VFYH-----K-EILQALEKEAVLTPHPKEFLSLLNL 353 (475)
T ss_dssp SSCSEEEECTTCSSCCT--T-HHHHHH----HS-CEEEEGG---GGGS-----G-GGGTTTTSSEEEECCHHHHHHHHHH
T ss_pred cCCCEEEEcCCCCCCHH--H-HHHHHh----cC-CEEEECc---ccCC-----c-hhhhccCCCEEECCCHHHHHHHhCC
Confidence 46788888732111221 2 444442 24 9999964 2221 0 1123345668999999999999975
Q ss_pred -----CCCCcccccccccccccCCcHHHHHHHhhcC-CCEEEEEcCCCcEEEEEcCCceeEecccCCCCCCcccCccChh
Q 008168 422 -----KPTEEFDTKNNARSKFVHYEPEVIAPLWHEN-LKVLFVTNGTSKVHYYTKEDDGAVLGTEDAPLTPFTSDMSASG 495 (575)
Q Consensus 422 -----~~~~~~d~~~~~~~~~~~~~~e~~~~l~~~g-~k~VVVT~G~~Ga~v~~~~~~~~v~a~~~~~v~~~vVDttGAG 495 (575)
+..+... . ..+.++++.++. ..+|++| |.. -++++ ++..++... ..+ -..|.|.|
T Consensus 354 ~~~~v~~~~~~~-------d----~~~aa~~la~~~g~~~VvlK-G~~-~vI~~-~~~~~~~~~---g~~--~mat~GtG 414 (475)
T 3k5w_A 354 VGINISMLELLD-------N----KLEIARDFSQKYPKVVLLLK-GAN-TLIAH-QGQVFINIL---GSV--ALAKAGSG 414 (475)
T ss_dssp TSCCCCTTSGGG-------S----CC--CHHHHHHCTTEEEEEC-SSS-EEEEE-TTEEEEECC---CCG--GGCSTTHH
T ss_pred ccCCCCcchhHH-------H----HHHHHHHHHHHcCCeEEEEe-CCC-CEEEC-CCEEEEECC---CCC--CCCCCCHH
Confidence 3221100 0 124555665544 4455555 443 23444 323333211 111 35689999
Q ss_pred HHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHHhhCC
Q 008168 496 DGIVAGIMRMLTVQPHLITDKGYLVRTIKYAIDCGVRDQWSQARTLGYPPKEGMEEEVEP 555 (575)
Q Consensus 496 DaF~AGfl~~L~~g~~~~~d~~sl~eAl~~A~aaAA~~v~~~G~~~g~pt~eeve~~l~~ 555 (575)
|++.|.+.+.|+++ .++.+|+..|...-+.+-.......+ ....+|-..|..
T Consensus 415 dvLsg~Iaa~lA~g-------~~~~~Aa~~a~~lhg~ag~~a~~~~~-~~a~dl~~~l~~ 466 (475)
T 3k5w_A 415 DVLAGLILSLLSQN-------YTPLDAAINASLAHALASLEFKNNYA-LTPLDLIEKIKQ 466 (475)
T ss_dssp HHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHGGGGCSSTTC-CCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHHHhccCCC-cCHHHHHHHhhh
Confidence 99999888888998 88888888776655544333211123 355666655543
No 75
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=53.79 E-value=2.7 Score=25.75 Aligned_cols=9 Identities=56% Similarity=0.955 Sum_probs=3.5
Q ss_pred hcccccccc
Q 008168 145 RRRRKTTKK 153 (575)
Q Consensus 145 ~~~~~~~~~ 153 (575)
|||||+|.|
T Consensus 5 rrrrkrkre 13 (28)
T 3ukx_C 5 RRRRKRKRE 13 (28)
T ss_dssp -CCCCCCCC
T ss_pred HHHHHhhcc
Confidence 344444443
No 76
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=43.42 E-value=1.4e+02 Score=26.40 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=39.1
Q ss_pred EEEEec-ccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhHHHHHHHhhccCeEeec-----CHHHHHHhh
Q 008168 346 MFYFST-HSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEETKMFIQQAWTLADVIEV-----TKQELEFLC 419 (575)
Q Consensus 346 ~v~~sg-~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~~~~l~~ll~~aDIl~~-----N~~Ea~~L~ 419 (575)
.|.++| -+++. .+.+.++++.+++.|..+.+..|.... .+.+..+++..|.+.+ +.+....+.
T Consensus 6 ~v~~tGGEPll~---~~~~~~l~~~~~~~g~~~~l~TNG~l~--------~~~~~~l~~~~d~v~isld~~~~~~~~~~~ 74 (182)
T 3can_A 6 GVTFCGGEPLLH---PEFLIDILKRCGQQGIHRAVDTTLLAR--------KETVDEVMRNCELLLIDLKSMDSTVHQTFC 74 (182)
T ss_dssp CEEECSSTGGGS---HHHHHHHHHHHHHTTCCEEEECTTCCC--------HHHHHHHHHTCSEEEEECCCSCHHHHHHHH
T ss_pred EEEEEcccccCC---HHHHHHHHHHHHHCCCcEEEECCCCCC--------HHHHHHHHhhCCEEEEECCCCCHHHHHHHh
Confidence 345554 33332 344568899999999999999875421 2345555566776554 344455566
Q ss_pred CC
Q 008168 420 GI 421 (575)
Q Consensus 420 g~ 421 (575)
|.
T Consensus 75 g~ 76 (182)
T 3can_A 75 DV 76 (182)
T ss_dssp SS
T ss_pred CC
Confidence 63
No 77
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=22.63 E-value=2.6e+02 Score=29.41 Aligned_cols=137 Identities=11% Similarity=0.026 Sum_probs=70.8
Q ss_pred CceEEecCChHHHHHHHHHHcC-----CCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCe
Q 008168 244 EKFIRSPGGCTGSAAIALARLG-----GKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRL 318 (575)
Q Consensus 244 ~~~~~~~GG~a~NvA~aLarLG-----~~v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger 318 (575)
..+....|+++.+.+.+|+... .+..++. .+. -..+...+.-.|+...++... .. + +
T Consensus 117 ~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~--r~a--HkSv~kAl~l~Gl~p~~v~~~----------~~-~--~- 178 (450)
T 3bc8_A 117 ASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWP--RID--QKSCFKSMVTAGFEPVVIENV----------LE-G--D- 178 (450)
T ss_dssp CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEE--CCC--CHHHHHHHHHTTCEEEEECCE----------EE-T--T-
T ss_pred ceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEE--CCc--HHHHHHHHHHcCCeeEEEEee----------ec-C--c-
Confidence 3456777887555555554432 3444444 233 345677777778876554211 11 1 1
Q ss_pred EEEEecCCccccCCccccchhhhc----cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhH
Q 008168 319 RMTCVKPCAEDALTKSEINIDVLK----EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEET 394 (575)
Q Consensus 319 ~~~~~~~ga~~~lt~~~i~~~~l~----~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~ 394 (575)
.. .++++.+. ..|. +...+++....-..+...+-+.++.+.|+++|+++.+|--+...+ ...
T Consensus 179 ~~---------~id~~~le-~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~----~~~ 244 (450)
T 3bc8_A 179 EL---------RTDLKAVE-AKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQS----SKC 244 (450)
T ss_dssp EE---------ECCHHHHH-HHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTC----HHH
T ss_pred cC---------CcCHHHHH-HHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhh----hhh
Confidence 11 23344442 1221 223333433211222233456788899999999999995433211 123
Q ss_pred HHHHHHhh--ccCeEeecCH
Q 008168 395 KMFIQQAW--TLADVIEVTK 412 (575)
Q Consensus 395 ~~~l~~ll--~~aDIl~~N~ 412 (575)
.++....+ ..+|.+..+-
T Consensus 245 ~~l~~~a~~~~~AD~~v~S~ 264 (450)
T 3bc8_A 245 MHLIQQGARVGRIDAFVQSL 264 (450)
T ss_dssp HHHHHHHHHHSCCCEEEEEH
T ss_pred HhHHHHHhcccCCCEEEECC
Confidence 34444555 6799988774
No 78
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=22.52 E-value=4.5e+02 Score=25.44 Aligned_cols=41 Identities=5% Similarity=-0.020 Sum_probs=27.3
Q ss_pred cCcEEEEeccc--ccccchHHHHHHHHHHHhhcCCEEEEcCCC
Q 008168 343 EAKMFYFSTHS--MLERNMKSTTLQAIKISKQFGGIIFYDVNL 383 (575)
Q Consensus 343 ~ad~v~~sg~~--l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~ 383 (575)
+..++++.... .-.-.+.+.+.++++.|+++|+.+++|-.+
T Consensus 150 ~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~ 192 (377)
T 3fdb_A 150 GARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIH 192 (377)
T ss_dssp TCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccc
Confidence 45677776421 001124566888999999999999999643
No 79
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=22.16 E-value=2.1e+02 Score=30.62 Aligned_cols=136 Identities=10% Similarity=0.068 Sum_probs=69.1
Q ss_pred CceEEecCChHHHHHHHHHHcC-----CCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCe
Q 008168 244 EKFIRSPGGCTGSAAIALARLG-----GKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRL 318 (575)
Q Consensus 244 ~~~~~~~GG~a~NvA~aLarLG-----~~v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger 318 (575)
..+...+|+++.+.|..|+.++ .+..++.. ++ -+.+...+.-.|+...++.. .++.+
T Consensus 135 ~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpR--n~--HKSv~kAliL~Gl~Pv~V~p-----------~~d~~--- 196 (501)
T 3hl2_A 135 ANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPR--ID--QKSCFKSMITAGFEPVVIEN-----------VLEGD--- 196 (501)
T ss_dssp CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEEC--CC--CHHHHHHHHHTTCEEEEECE-----------EEETT---
T ss_pred CcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEec--ch--HHHHHHHHHHcCCeEEEEee-----------eeccc---
Confidence 4577788888888888777664 25555533 22 24566667667776544421 11111
Q ss_pred EEEEecCCccccCCccccchhhhc----cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCCCCCccccCchhH
Q 008168 319 RMTCVKPCAEDALTKSEINIDVLK----EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVNLPLPLWQSGEET 394 (575)
Q Consensus 319 ~~~~~~~ga~~~lt~~~i~~~~l~----~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~~~~~l~~~~~~~ 394 (575)
.+ .++++.+. ..|+ ++-.+++...+-..+...+-+.++.+.|+++|+++++|--+..-+ ...
T Consensus 197 ~~---------~id~e~le-~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~----~~~ 262 (501)
T 3hl2_A 197 EL---------RTDLKAVE-AKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQS----SKC 262 (501)
T ss_dssp EE---------EECHHHHH-HHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTC----HHH
T ss_pred cc---------CCCHHHHH-HHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhh----hhh
Confidence 11 12333332 2221 122233222211122233456778899999999999995443322 112
Q ss_pred HHHHHHhhcc--CeEeecC
Q 008168 395 KMFIQQAWTL--ADVIEVT 411 (575)
Q Consensus 395 ~~~l~~ll~~--aDIl~~N 411 (575)
.+.....+.+ +|++..+
T Consensus 263 ~~lp~sA~~~GrAD~vVqS 281 (501)
T 3hl2_A 263 MHLIQQGARVGRIDAFVQS 281 (501)
T ss_dssp HHHHHHHHHHSCCCEEEEE
T ss_pred hhhHHHHHhcCCCcEEEec
Confidence 2333334433 7766554
No 80
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=20.44 E-value=2.2e+02 Score=27.88 Aligned_cols=107 Identities=9% Similarity=0.117 Sum_probs=54.7
Q ss_pred eEEecCChHHHHHHHHHHcC-CCeEEEEEeCCChHHHHHHHHHHhCCCccceEEEcCCCCceEEEEEEcCCCCeEEEEec
Q 008168 246 FIRSPGGCTGSAAIALARLG-GKVAFMGKLGDDEYGQAMLYYMNVNNVQTRSVRIDAKRPTAVSQMKIGKRGRLRMTCVK 324 (575)
Q Consensus 246 ~~~~~GG~a~NvA~aLarLG-~~v~lig~VG~D~~G~~l~~~L~~~GIdt~~v~~~~~~~T~~~~i~vd~~Ger~~~~~~ 324 (575)
+....||..++.+...+.+. .+..++.. ...+|..+...+...|+....+.. +.++
T Consensus 77 v~~~~gg~~al~~~~~~~~~~gd~vl~~~--~~~~~~~~~~~~~~~g~~~~~~~~-------------~~~~-------- 133 (393)
T 3kgw_A 77 LVVSGSGHCAMETALFNLLEPGDSFLTGT--NGIWGMRAAEIADRIGARVHQMIK-------------KPGE-------- 133 (393)
T ss_dssp EEESCCTTTHHHHHHHHHCCTTCEEEEEE--SSHHHHHHHHHHHHTTCEEEEEEC-------------CTTC--------
T ss_pred EEEeCCcHHHHHHHHHhcCCCCCEEEEEe--CCchhHHHHHHHHHcCCceEEEeC-------------CCCC--------
Confidence 44567777776554444442 23333333 234655556666666765433221 1111
Q ss_pred CCccccCCccccchhhhc--cCcEEEEecccccccchHHHHHHHHHHHhhcCCEEEEcCC
Q 008168 325 PCAEDALTKSEINIDVLK--EAKMFYFSTHSMLERNMKSTTLQAIKISKQFGGIIFYDVN 382 (575)
Q Consensus 325 ~ga~~~lt~~~i~~~~l~--~ad~v~~sg~~l~~~~~~e~~~~~l~~ak~~G~~Vv~D~~ 382 (575)
.++.+.+. ..+. +.++|+++.......... .+.++.+.|+++|+.+++|-.
T Consensus 134 -----~~d~~~l~-~~i~~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~De~ 186 (393)
T 3kgw_A 134 -----HYTLQEVE-EGLAQHKPVLLFLVHGESSTGVVQ-PLDGFGELCHRYQCLLLVDSV 186 (393)
T ss_dssp -----CCCHHHHH-HHHHHHCCSEEEEESEETTTTEEC-CCTTHHHHHHHTTCEEEEECT
T ss_pred -----CCCHHHHH-HHHhhCCCcEEEEeccCCcchhhc-cHHHHHHHHHHcCCEEEEECC
Confidence 12334442 2232 567787774210000000 145677888999999999954
Done!