Query 008169
Match_columns 575
No_of_seqs 303 out of 1266
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 20:21:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1138 Predicted cleavage and 100.0 1.6E-93 3.4E-98 732.2 36.4 525 1-573 106-652 (653)
2 KOG1136 Predicted cleavage and 100.0 1E-77 2.2E-82 590.3 29.6 370 2-453 73-464 (501)
3 KOG1135 mRNA cleavage and poly 100.0 3.4E-73 7.4E-78 602.0 39.6 477 2-568 64-761 (764)
4 KOG1137 mRNA cleavage and poly 100.0 1.6E-73 3.5E-78 591.2 23.4 393 2-486 78-499 (668)
5 COG1782 Predicted metal-depend 100.0 3.4E-68 7.4E-73 547.7 26.9 354 2-433 247-636 (637)
6 TIGR03675 arCOG00543 arCOG0054 100.0 2.5E-63 5.5E-68 553.1 36.5 357 2-433 241-629 (630)
7 COG1236 YSH1 Predicted exonucl 100.0 1.7E-54 3.7E-59 464.6 31.3 342 2-432 62-426 (427)
8 TIGR00649 MG423 conserved hypo 99.9 1.8E-24 4E-29 233.8 23.3 272 99-435 112-419 (422)
9 PF10996 Beta-Casp: Beta-Casp 99.9 4.6E-23 1E-27 185.7 10.1 118 239-364 1-121 (126)
10 PF13299 CPSF100_C: Cleavage a 99.4 2.2E-13 4.8E-18 127.4 8.0 117 442-568 1-161 (161)
11 COG0595 mRNA degradation ribon 99.4 9.7E-11 2.1E-15 128.7 25.0 317 2-437 79-431 (555)
12 PF07521 RMMBL: RNA-metabolisi 99.1 3.4E-11 7.4E-16 87.1 3.1 42 369-410 2-43 (43)
13 KOG1361 Predicted hydrolase in 98.2 8.1E-05 1.8E-09 80.1 17.5 73 96-169 156-229 (481)
14 TIGR03307 PhnP phosphonate met 97.2 0.00055 1.2E-08 68.4 6.5 65 102-169 111-175 (238)
15 PF12706 Lactamase_B_2: Beta-l 96.3 0.0074 1.6E-07 57.6 6.1 63 98-169 88-154 (194)
16 PF07522 DRMBL: DNA repair met 95.5 0.075 1.6E-06 46.5 8.3 82 322-403 12-103 (110)
17 PRK11244 phnP carbon-phosphoru 95.3 0.036 7.9E-07 55.7 6.4 65 102-169 121-185 (250)
18 smart00849 Lactamase_B Metallo 95.0 0.028 6E-07 52.6 4.2 47 98-147 98-145 (183)
19 TIGR02108 PQQ_syn_pqqB coenzym 94.9 0.07 1.5E-06 55.4 7.4 67 100-170 134-220 (302)
20 TIGR02651 RNase_Z ribonuclease 94.6 0.092 2E-06 54.1 7.4 34 101-135 115-149 (299)
21 TIGR02649 true_RNase_BN ribonu 94.0 0.12 2.5E-06 53.7 6.6 67 100-174 117-233 (303)
22 PRK05452 anaerobic nitric oxid 90.7 0.56 1.2E-05 52.0 6.9 47 99-147 121-169 (479)
23 PRK11921 metallo-beta-lactamas 89.5 0.76 1.7E-05 49.5 6.6 45 99-146 118-164 (394)
24 PRK00685 metal-dependent hydro 89.3 0.68 1.5E-05 45.5 5.6 68 98-169 85-164 (228)
25 TIGR02650 RNase_Z_T_toga ribon 87.8 4.6 0.0001 41.3 10.5 67 100-175 107-211 (277)
26 PRK11709 putative L-ascorbate 86.7 1.5 3.2E-05 46.6 6.5 69 97-169 159-249 (355)
27 PF13483 Lactamase_B_3: Beta-l 86.6 0.82 1.8E-05 42.6 4.1 70 96-169 59-135 (163)
28 PRK05184 pyrroloquinoline quin 86.3 1.2 2.6E-05 46.3 5.5 66 100-169 137-219 (302)
29 PRK02113 putative hydrolase; P 84.6 1.3 2.8E-05 44.4 4.6 64 98-170 127-191 (252)
30 TIGR03413 GSH_gloB hydroxyacyl 73.4 9.7 0.00021 38.2 6.9 45 100-147 84-129 (248)
31 PRK03094 hypothetical protein; 68.0 13 0.00029 30.5 5.2 69 501-569 8-76 (80)
32 PF00753 Lactamase_B: Metallo- 67.7 23 0.00049 32.4 7.7 45 103-148 105-149 (194)
33 PRK04286 hypothetical protein; 67.5 16 0.00034 37.9 7.0 66 100-170 135-210 (298)
34 PLN02469 hydroxyacylglutathion 66.2 12 0.00027 37.8 5.9 47 100-146 88-137 (258)
35 COG0491 GloB Zn-dependent hydr 64.2 11 0.00025 36.5 5.1 45 100-147 125-170 (252)
36 PRK00055 ribonuclease Z; Revie 63.9 4.2 9E-05 40.8 1.9 42 126-174 156-197 (270)
37 PRK00685 metal-dependent hydro 61.1 12 0.00026 36.5 4.7 52 382-433 168-228 (228)
38 PRK02126 ribonuclease Z; Provi 58.7 29 0.00063 36.6 7.2 22 112-133 151-172 (334)
39 PLN02398 hydroxyacylglutathion 57.0 33 0.00071 36.1 7.2 45 100-147 164-209 (329)
40 COG1234 ElaC Metal-dependent h 54.7 2.4 5.1E-05 43.9 -1.7 56 112-174 160-221 (292)
41 PF11718 CPSF73-100_C: Pre-mRN 54.6 50 0.0011 32.5 7.6 55 464-519 2-63 (216)
42 PLN02962 hydroxyacylglutathion 54.3 25 0.00053 35.5 5.6 46 101-147 103-153 (251)
43 PF13788 DUF4180: Domain of un 48.3 11 0.00024 33.2 1.7 78 337-414 22-112 (113)
44 COG2248 Predicted hydrolase (m 45.3 1.1E+02 0.0024 30.9 8.2 120 105-254 139-269 (304)
45 PF03698 UPF0180: Uncharacteri 45.0 62 0.0014 26.7 5.5 37 502-538 9-45 (80)
46 PRK00055 ribonuclease Z; Revie 44.6 30 0.00066 34.5 4.5 56 381-436 207-269 (270)
47 PF12706 Lactamase_B_2: Beta-l 42.6 20 0.00044 33.6 2.7 26 381-406 168-193 (194)
48 COG0426 FpaA Uncharacterized f 40.0 55 0.0012 35.1 5.7 46 99-147 121-168 (388)
49 PRK11188 rrmJ 23S rRNA methylt 39.9 30 0.00064 33.8 3.5 40 213-252 145-184 (209)
50 KOG0813 Glyoxylase [General fu 36.3 70 0.0015 32.6 5.5 45 101-146 95-141 (265)
51 PF02112 PDEase_II: cAMP phosp 35.2 5.2E+02 0.011 27.3 12.0 33 114-146 177-217 (335)
52 TIGR00438 rrmJ cell division p 31.2 1.1E+02 0.0023 29.0 5.8 40 211-250 124-163 (188)
53 TIGR00361 ComEC_Rec2 DNA inter 29.8 97 0.0021 35.9 6.0 67 100-169 533-606 (662)
54 PRK10241 hydroxyacylglutathion 29.1 88 0.0019 31.4 4.9 43 99-146 86-129 (251)
55 COG2927 HolC DNA polymerase II 27.5 1.1E+02 0.0024 28.2 4.7 36 214-249 17-52 (144)
56 PF06057 VirJ: Bacterial virul 27.3 1.2E+02 0.0026 29.4 5.1 45 389-438 129-173 (192)
57 PRK11244 phnP carbon-phosphoru 26.1 1E+02 0.0022 30.6 4.8 28 382-409 196-223 (250)
58 PRK10664 transcriptional regul 24.7 1.2E+02 0.0027 25.3 4.3 29 208-236 21-49 (90)
59 cd03770 SR_TndX_transposase Se 23.0 4.3E+02 0.0093 23.7 7.9 65 222-288 63-137 (140)
60 COG2333 ComEC Predicted hydrol 22.8 2E+02 0.0043 29.8 6.1 95 349-445 180-286 (293)
61 PF04413 Glycos_transf_N: 3-De 22.5 96 0.0021 29.7 3.6 98 324-424 22-123 (186)
62 PRK02113 putative hydrolase; P 22.4 96 0.0021 30.8 3.8 28 381-408 197-224 (252)
63 COG4004 Uncharacterized protei 22.0 4.9E+02 0.011 22.0 7.3 48 500-548 11-58 (96)
64 PF02670 DXP_reductoisom: 1-de 22.0 90 0.002 28.2 3.1 31 378-408 27-57 (129)
65 PF13483 Lactamase_B_3: Beta-l 21.5 1E+02 0.0022 28.3 3.6 34 373-406 128-163 (163)
66 COG0293 FtsJ 23S rRNA methylas 21.3 1.8E+02 0.0038 28.5 5.1 39 215-253 141-179 (205)
67 TIGR03307 PhnP phosphonate met 21.3 83 0.0018 31.0 3.0 29 382-410 186-214 (238)
68 COG2220 Predicted Zn-dependent 21.2 1.8E+02 0.004 29.0 5.5 68 97-169 100-180 (258)
69 TIGR00537 hemK_rel_arch HemK-r 20.8 1.5E+02 0.0032 27.7 4.5 37 212-248 119-155 (179)
70 PRK00377 cbiT cobalt-precorrin 20.3 1.6E+02 0.0035 28.1 4.7 35 214-248 126-160 (198)
No 1
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=1.6e-93 Score=732.22 Aligned_cols=525 Identities=31% Similarity=0.551 Sum_probs=477.3
Q ss_pred CcccccchhccccCCcceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhHhhhhccCCCC
Q 008169 1 MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGS 80 (575)
Q Consensus 1 ~~~~aLP~l~~~~gf~g~IY~T~pT~~l~~llL~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 80 (575)
|||+||||+||++||.|+||||+||+++||+||+|++.+.+++ +++++++.|+++...+.+|+++++++
T Consensus 106 ~~mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv~fier~-----p~~~S~~~Wk~k~~~~~lpsplk~~~------ 174 (653)
T KOG1138|consen 106 MGMLGLPFITENTGFFGKIYATEPTAQIGRLLMEELVSFIERF-----PKASSAPLWKKKLDSELLPSPLKKAV------ 174 (653)
T ss_pred hhhcccceeecCCCceeEEEEechHHHHHHHHHHHHHHHHHhc-----cccccchhhhhhhhhhhcCCCchhhc------
Confidence 7999999999999999999999999999999999999999863 67788899999988899999998854
Q ss_pred CCCCCCchH--HHHHHHHhcceEecCCCEEEeCCceEEEeecCCccccceEEEEEeCCeeEEEecCCCCCCCCCCCCCCC
Q 008169 81 ELGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYR 158 (575)
Q Consensus 81 ~~~~~~~ly--~dv~~~~~~i~~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s~~~~~~~~~d~~ 158 (575)
....|+++| +||+.|+++++.|+|+|++++.|.+.+||.+|||.+|||+|.|...++++-|++|++..++|+.++|++
T Consensus 175 ~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtplsSG~~lGSsnW~I~t~nek~sYvS~Ss~ltth~r~md~a 254 (653)
T KOG1138|consen 175 FLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPLSSGYDLGSSNWLINTPNEKLSYVSGSSFLTTHPRPMDQA 254 (653)
T ss_pred cccceeeeeehhHHHHHHHhheecccceeeeccceEEEEeccccccccccceEEecCCcceEEEecCcccccCCcccccc
Confidence 467899999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEcCCCCCCCCccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHHHhcCCeEEEecCChhH
Q 008169 159 AIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGV 238 (575)
Q Consensus 159 ~l~~~DvLI~e~~st~~~~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~tl~~GG~VLIP~fa~GR 238 (575)
.|+.+|+||++++++.+ +.+++ ++..+||..|..|+++||+||+|+++.|.
T Consensus 255 ~Lk~~Dvli~T~lsql~-----------tanpd------------------~m~gelc~nvt~~~rn~GsvL~PcyPsGv 305 (653)
T KOG1138|consen 255 GLKETDVLIYTGLSQLP-----------TANPD------------------EMGGELCKNVTLTGRNHGSVLLPCYPSGV 305 (653)
T ss_pred ccccccEEEEecccccc-----------cCCcc------------------chhhhHHHHHHHHhhcCCceeeeccCCch
Confidence 99999999999888875 23333 26678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCc-ccEEEECchHHHHHHHHHHhHHhhhHHHHHhhccCCCCCcchhhhhcccccccCCCCChhh
Q 008169 239 FLQLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKL 317 (575)
Q Consensus 239 ~qELl~~L~~~~~~~~l~-vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~e~pF~~~~l~~~~~l~~~~~i~~~~~ 317 (575)
+.||+++|.++.++.++. +||||+||+|+.++++.++..|||+.++|+++|.|++||+|..+++++|++++.++.+. +
T Consensus 306 iydl~Ecls~~idna~ls~~P~yfISpvadSsla~s~ilaEwls~akqnkvylpe~p~~hs~lI~~~rlkiy~sl~g~-f 384 (653)
T KOG1138|consen 306 IYDLIECLSQDIDNAGLSDTPIYFISPVADSSLATSDILAEWLSLAKQNKVYLPEAPFPHSTLITINRLKIYLSLLGL-F 384 (653)
T ss_pred hhHHHHHhhhcccccCCcCCcceEecccchhhhhHHHHHHHHHHhhhccceeccCCCCCCceEEeecceeehHHHHHH-H
Confidence 999999999999999986 99999999999999999999999999999999999999999999999999999999864 8
Q ss_pred hhccCCCEEEEecCCCCCcchHHHHHHHHhCCCCCcEEec-CccchhhccCCCceeeeEEEEeecccCCChhhHHHHHhh
Q 008169 318 LMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLE-NEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKI 396 (575)
Q Consensus 318 ~~~~~~P~VV~as~gml~~G~s~~~l~~~~~d~~N~Iil~-g~~~~~~~l~~~~~v~~~v~~~~fsaHaD~~~l~~~i~~ 396 (575)
.+++++|||||++|++|++|+++|+++-|+.+|+|++|+| |+++++..+.||+|+.||+.+|||..+.|++++.+++++
T Consensus 385 Sndfrqpcvvf~~H~SlRfgdv~h~~e~~g~sp~NsvI~tdpD~~~~~vl~PfrpLamK~i~cpidtrlnfqql~kLlke 464 (653)
T KOG1138|consen 385 SNDFRQPCVVFMGHPSLRFGDVVHFLECWGLSPKNSVIFTDPDFSYLLVLAPFRPLAMKIIYCPIDTRLNFQQLPKLLKE 464 (653)
T ss_pred hhhcccceeEecCCcchhhhHHHHHHHHhcCCCCCceEEeCCCCchhhhhcCCccccceeEeccccccccHHHHHHHHHH
Confidence 8999999999999999999999999999999999999986 568999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCccccccccc------CCceeeecCCCcEEEeCCCCeeEEEEecHHHHhhhhhhhhcccC-cceeeEEE
Q 008169 397 LQPKLVLFPEEWRTHVSFSDV------TSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKK-LNITRLKG 469 (575)
Q Consensus 397 ~~P~~vilvHGe~~~~~~l~~------~~~~v~~p~~~e~i~l~~~~~~~~v~l~~~l~~~l~~~~~~~~~-~~~a~v~g 469 (575)
+||+.|+++..+.+.+..... .-+++.+...+|.+++|.+++..+|.++++||++|.|++++ ++ +.+|+++|
T Consensus 465 lqPk~vlcpeaytqp~~~ap~~~i~~~d~~pi~t~~c~ei~~lp~Krkl~~veItpela~kLs~ke~~-~~~~~iAtl~~ 543 (653)
T KOG1138|consen 465 LQPKIVLCPEAYTQPIPLAPIKTISILDYFPIKTLHCPEIVDLPNKRKLVSVEITPELASKLSPKELR-QGEFGIATLKG 543 (653)
T ss_pred hCCCEEEChhhhcCCCCccchheehhccccccceeehhHHhcCccccceeEEEEcHHHHhhCChhhcc-CceeEEEEEEE
Confidence 999999999999988776652 23467788889999999999999999999999999999997 55 89999999
Q ss_pred EEEEeCCeeeeecCCCCCC----CCCCC------CceEecCCChHHHHHHHHHCCCceEEeeccccCcCCCceEEEEeCC
Q 008169 470 RLFVNHGKHQLLPENEPGG----SSQTR------PFLHWGSPDPENLLAELSKMGINGSVERCMTDAESEDGFTVKVQDP 539 (575)
Q Consensus 470 ~l~~~~~~~~l~~~~~~~~----~~~~~------~~~~~g~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (575)
+|.++|++|.|+|...+.. ++... .++..|++.++++++.|.+.||....... +..+.+|...+
T Consensus 544 ~L~~~d~kh~Lvp~~~~~k~ek~s~~~~p~lk~lk~~~a~ei~vda~~k~~ik~~~s~itvdn-----~g~g~~i~~~e- 617 (653)
T KOG1138|consen 544 VLLMKDGKHRLVPAKVSLKQEKSSSKARPVLKVLKNSVAGEILVDALLKMLIKGGFSQITVDN-----TGEGKSIILIE- 617 (653)
T ss_pred EEEEecCceeeeecccchhhhhcccccchHHhhhhhccCcccchHHHHHHHhhcchhheeeec-----CCCceEEEecc-
Confidence 9999999999999655421 11111 24677999999999999999998876432 33466666666
Q ss_pred CCcEEEEcCceeeEecC-CHHHHHHHHHHHHHhhc
Q 008169 540 EKSMIEVRAAVTVISAA-DKNLASRIVKAMENILE 573 (575)
Q Consensus 540 ~~~~i~~~~~~t~I~~~-~~~~R~~l~~~~~~~l~ 573 (575)
++++|+++++.|||+|+ +..+|..++|+...++.
T Consensus 618 ~enlikf~Em~t~Ii~~dd~~v~~~~~di~~~llq 652 (653)
T KOG1138|consen 618 NENLIKFEEMGTHIICGDDNVVRQVLRDIDGKLLQ 652 (653)
T ss_pred CchhhhhhhccceEEECCCchhhhhhHhhhhhhcc
Confidence 66799999999999999 99999999999988763
No 2
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=1e-77 Score=590.28 Aligned_cols=370 Identities=20% Similarity=0.311 Sum_probs=323.4
Q ss_pred cccccchhccccCCcceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhHhhhhccCCCCC
Q 008169 2 GMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSE 81 (575)
Q Consensus 2 ~~~aLP~l~~~~gf~g~IY~T~pT~~l~~llL~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 81 (575)
|-|||||++|-.||.||||||.||++++++||+|+-+++- +++++
T Consensus 73 HcGaLPyfsEv~GY~GPIYMt~PTkaicPvlLeDyRkv~v----------------------------------d~kGe- 117 (501)
T KOG1136|consen 73 HCGALPYFSEVVGYDGPIYMTYPTKAICPVLLEDYRKVAV----------------------------------DRKGE- 117 (501)
T ss_pred ccccccchHhhhCCCCceEEecchhhhchHHHHHHHHHhc----------------------------------cccCc-
Confidence 5699999999999999999999999999999999987753 22233
Q ss_pred CCCCCchH--HHHHHHHhcceEecCCCEEEeCCceEEEeecCCccccceEEEEEeCCeeEEEecCCCCC-CCCCCCCCCC
Q 008169 82 LGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFA-SGHAMDFDYR 158 (575)
Q Consensus 82 ~~~~~~ly--~dv~~~~~~i~~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s~~-~~~~~~~d~~ 158 (575)
..+| +||.+||+++.++..+|++.++.++.|++|.|||+||||||.|..+..+|+|||||+.. +||+.++-..
T Consensus 118 ----~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYAGHVLGAaMf~ikvGd~svvYTGDYnmTpDrHLGaA~id 193 (501)
T KOG1136|consen 118 ----SNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYAGHVLGAAMFYIKVGDQSVVYTGDYNMTPDRHLGAAWID 193 (501)
T ss_pred ----ccceeHHHHHHHHhheeEeeehheEEecccceeeeeecccccceeEEEEEecceeEEEecCccCCcccccchhhhc
Confidence 2455 99999999999999999999999999999999999999999999999999999999976 8998876655
Q ss_pred CCCCCcEEEEcCCCCCCCCccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHHHhcCCeEEEecCChhH
Q 008169 159 AIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGV 238 (575)
Q Consensus 159 ~l~~~DvLI~e~~st~~~~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~tl~~GG~VLIP~fa~GR 238 (575)
.+ ++|+||.| |||+ ...|++++.+|| +|+..|++++.+||+||||+||+||
T Consensus 194 ~~-rpdlLIsE--STYa------------------------ttiRdskr~rER--dFLk~VhecVa~GGkvlIPvFALGR 244 (501)
T KOG1136|consen 194 KC-RPDLLISE--STYA------------------------TTIRDSKRCRER--DFLKKVHECVARGGKVLIPVFALGR 244 (501)
T ss_pred cc-cCceEEee--ccce------------------------eeeccccchhHH--HHHHHHHHHHhcCCeEEEEeeecch
Confidence 43 68999999 5654 334555556664 4999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcccEEEECchHHHHHHHHHHhHHhhhHHHHHhhccCCCCCcchhhhhcccccccCCCCChh-h
Q 008169 239 FLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPK-L 317 (575)
Q Consensus 239 ~qELl~~L~~~~~~~~l~vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~e~pF~~~~l~~~~~l~~~~~i~~~~-~ 317 (575)
+|||+.+|+.||++.+|++|||+.++++.++..||+.+..|.+++.+++.+ ..|+|. |++++..+ .
T Consensus 245 AQElCiLLd~YWERm~lk~Piyfs~Glte~an~yyk~fiswtn~~v~k~~~-~rNmfd------------fkhiKpfd~~ 311 (501)
T KOG1136|consen 245 AQELCILLDDYWERMNLKVPIYFSSGLTEKANMYYKMFISWTNENVKKKFV-ERNMFD------------FKHIKPFDRS 311 (501)
T ss_pred HHHHHHHHHHHHHhhccCCCccccccccchhchHhhhhhhhcccchhhhhc-cCCccc------------cccCChhhhh
Confidence 999999999999999999999999999999999999999999998876543 345553 34443322 2
Q ss_pred hhccCCCEEEEecCCCCCcchHHHHHHHHhCCCCCcEEecCccchhhc-------------cCCCceeeeEEEEeecccC
Q 008169 318 LMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELA-------------VLPFKPISMKVLQCSFLSG 384 (575)
Q Consensus 318 ~~~~~~P~VV~as~gml~~G~s~~~l~~~~~d~~N~Iil~g~~~~~~~-------------l~~~~~v~~~v~~~~fsaH 384 (575)
..+.++|+|+|||||||.+|.|+..|++||+||.|.||++||+.++++ .+....++|+|+++.||+|
T Consensus 312 ~~~~pGp~VlFatPGMLhaG~SLkvFK~W~~~~~NlvimPGYcV~GTvG~kvl~G~~kvei~~~~~eirl~V~~maFSaH 391 (501)
T KOG1136|consen 312 YIEAPGPMVLFATPGMLHAGFSLKVFKKWCPDPLNLVIMPGYCVAGTVGHKVLNGATKVEIYGTKVEIRLKVEYMAFSAH 391 (501)
T ss_pred hhcCCCCEEEEcCCcccccccchHHHHhhCCCccceEeecCceeccchhhhhhCCccEEEEeeeEEEEEEEEEEeeeccc
Confidence 346799999999999999999999999999999999999999988643 2345689999999999999
Q ss_pred CChhhHHHHHhhcCCCEEEEecCCcccccccc-----cCCceeeecCCCcEEEeCCCCeeEEEEecHHHHhhhh
Q 008169 385 KKLQKVQPLLKILQPKLVLFPEEWRTHVSFSD-----VTSFSVSHYSENETIHIPSLKESAELEIAADIASKFQ 453 (575)
Q Consensus 385 aD~~~l~~~i~~~~P~~vilvHGe~~~~~~l~-----~~~~~v~~p~~~e~i~l~~~~~~~~v~l~~~l~~~l~ 453 (575)
||..+++++++++.|++|+|||||+..|..|+ +.++|+++|.|||++.+++... ++++++++...++.
T Consensus 392 aDAkGIm~li~~csPknVmlVHGE~~kM~~Lk~ki~~e~~ip~~mPaNGetv~i~s~~~-i~~ri~~~~~~~~~ 464 (501)
T KOG1136|consen 392 ADAKGIMQLIKQCSPKNVMLVHGEKSKMKFLKEKIESEFDIPTFMPANGETVVISSTTY-IKARIPDEFLVSLS 464 (501)
T ss_pred cCchhHHHHHHhcCcceEEEEeccchhhHHHHHhhHhhcCCceeeCCCCCEEEecccce-eeecCcHHHHHHhc
Confidence 99999999999999999999999999999998 4689999999999999999776 88999998777654
No 3
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=3.4e-73 Score=602.01 Aligned_cols=477 Identities=18% Similarity=0.287 Sum_probs=392.2
Q ss_pred cccccchhccccCCcceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhHhhhhccCCCCC
Q 008169 2 GMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSE 81 (575)
Q Consensus 2 ~~~aLP~l~~~~gf~g~IY~T~pT~~l~~llL~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 81 (575)
|+|||||++.++|++++||||.|+..||++.|+|+++.+.+ -.+
T Consensus 64 hlGaLpY~~~k~gl~~~VYAT~PV~~mG~m~myD~~~S~~~------------------------------------~~d 107 (764)
T KOG1135|consen 64 HLGALPYAVGKLGLNAPVYATLPVIKMGQMFMYDLYRSHGN------------------------------------VGD 107 (764)
T ss_pred HhccchhhHhhCCccceEEEecchhhhhhhhHHHHHhcccc------------------------------------ccc
Confidence 89999999999999999999999999999999999965421 011
Q ss_pred CCCCCchH--HHHHHHHhcceEecCCCEEEeCC---ceEEEeecCCccccceEEEEEeCCeeEEEecCCCCC-CCCCCCC
Q 008169 82 LGGGCPCI--AHVKDCISKVQTLRFGEEACYNG---ILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFA-SGHAMDF 155 (575)
Q Consensus 82 ~~~~~~ly--~dv~~~~~~i~~v~y~q~~~l~g---~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s~~-~~~~~~~ 155 (575)
+.+| +||+.||++|.+++|+|++.+.| +++||||+|||+||++.|.|...+++|+|.-|++.. .+|+...
T Consensus 108 ----f~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWkI~k~~E~ivYavd~NHkKe~HLNG~ 183 (764)
T KOG1135|consen 108 ----FDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWKISKVGEDIVYAVDFNHKKERHLNGC 183 (764)
T ss_pred ----ccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEEEEecCceEEEEEecccchhcccCCc
Confidence 4677 99999999999999999999986 599999999999999999999999999997776653 4444433
Q ss_pred CCCCCCCCcEEEEcCCCCCCCCccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHHHhcCCeEEEecCC
Q 008169 156 DYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINR 235 (575)
Q Consensus 156 d~~~l~~~DvLI~e~~st~~~~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~tl~~GG~VLIP~fa 235 (575)
... +.. ||+++||++.+. . |. + .+++.|+++|++.|.++|+.||+||||+++
T Consensus 184 ~l~--------------~l~-----RPsllITda~~~--~--~~---~--~~rkkRDe~f~d~v~~~L~~~G~VlipVDt 235 (764)
T KOG1135|consen 184 SLS--------------GLN-----RPSLLITDANHA--L--YS---Q--PRRKKRDEQFLDTVLKTLRSGGNVLIPVDT 235 (764)
T ss_pred ccc--------------ccC-----CcceEEeccccc--c--cc---c--cchhHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 332 332 556666666653 1 11 1 234567799999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhC--CCc-ccEEEECchHHHHHHHHHHhHHhhhHHHHHhhc--cCCCCCcc--hhhhhcccccc
Q 008169 236 VGVFLQLLEQIAIFMECS--SLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLF--SGDPLFAH--VKLIKEKKIHV 308 (575)
Q Consensus 236 ~GR~qELl~~L~~~~~~~--~l~-vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~--~~e~pF~~--~~l~~~~~l~~ 308 (575)
.||++||+.+|+++|.+. ++. +||++.|+++.++++|++++.|||+++.-+ .| ...|||.+ ..+|++.
T Consensus 236 AgRvLELa~iLdqlws~~~~gl~~~pl~~Ls~vs~~tveyAKSmiEWmsdkl~k-~fe~~r~NpFefrhi~l~~~~---- 310 (764)
T KOG1135|consen 236 AGRVLELALILDQLWSQSDAGLSQYPLAFLSYVSSRTVEYAKSMIEWMSDKLSK-MFEEARNNPFEFRHITLCHSL---- 310 (764)
T ss_pred cHHHHHHHHHHHHHHhcccCCCcccceeeeeccchhHHHHHHHHHHHhhhHHHH-hhhhccCCcceeeeeeeecCH----
Confidence 999999999999999988 677 999999999999999999999999998754 44 35678754 4444331
Q ss_pred cCCCCChhhhhccCCCEEEEecCCCCCcchHHHHHHHHhCCCCCcEEecCccch--------------------------
Q 008169 309 FPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDA-------------------------- 362 (575)
Q Consensus 309 ~~~i~~~~~~~~~~~P~VV~as~gml~~G~s~~~l~~~~~d~~N~Iil~g~~~~-------------------------- 362 (575)
.+..+...+|+||+||.+.|++|+|+.+|-+|++||+|.|+||..-+.
T Consensus 311 ------~dlsr~p~gpkVVlas~~~lE~Gfsrd~fl~w~~d~~N~illt~r~~~~tLa~el~~~~e~~k~i~l~~r~rv~ 384 (764)
T KOG1135|consen 311 ------QDLSRVPPGPKVVLASVPDLECGFSRDLFLEWASDPRNLILLTERGSPGTLARELISMPERAKRIELKVRKRVK 384 (764)
T ss_pred ------HHHhcCCCCCeEEEeeccchhcchhHHHHHHHhcCCcceEEEecCCCchhHHHHHhhcccccceeeeeeecccC
Confidence 123334566999999999999999999999999999999999820000
Q ss_pred -----------hh--------------------------------------------------------------ccCCC
Q 008169 363 -----------EL--------------------------------------------------------------AVLPF 369 (575)
Q Consensus 363 -----------~~--------------------------------------------------------------~l~~~ 369 (575)
++ .|+|+
T Consensus 385 LeGeEl~ey~~~e~~r~e~~~~~~~~~~~~~~~~~~Sd~~dd~d~~~~~~~~Hd~~~~~~~~~~~~f~~~~~~~~~MFPy 464 (764)
T KOG1135|consen 385 LEGEELLEYLEGERLRNEDALRLNVNRDVEIDSSHESDDSDDEDMENDTEVRHDIMSKAGKSTKDGFFKSAKSKHPMFPY 464 (764)
T ss_pred CchHHHHHHHhhhhhhhhhhHHhhccCCccccccccCCcccccccccccccchhhhhccCCcccccccccccccCcccCC
Confidence 00 01111
Q ss_pred --------------------------------------------------------------------ceeeeEEEEeec
Q 008169 370 --------------------------------------------------------------------KPISMKVLQCSF 381 (575)
Q Consensus 370 --------------------------------------------------------------------~~v~~~v~~~~f 381 (575)
..++|+|++++|
T Consensus 465 ~e~r~k~DdYGEiI~~~df~v~~~~~~~~gak~~~pv~~~~~Ee~~g~~~~~~~~~~~ptk~is~~~~i~vs~~v~~iDy 544 (764)
T KOG1135|consen 465 IEERRKWDDYGEIIKPDDFTVIRKEDLKDGAKKNEPVVDNKSEEEDGYSDEIEDLSEVPTKCISGEKGIEVSCRVEKIDY 544 (764)
T ss_pred cHHhccccccccccCHHHcccccccchhhhhhccCCcccccccccccccCchhhhhcccceeeccccceEEEEEEEEeee
Confidence 278999999999
Q ss_pred ccCCChhhHHHHHhhcCCCEEEEecCCccccccccc-------CCceeeecCCCcEEEeCCCCeeEEEEecHHHHhhhhh
Q 008169 382 LSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDV-------TSFSVSHYSENETIHIPSLKESAELEIAADIASKFQW 454 (575)
Q Consensus 382 saHaD~~~l~~~i~~~~P~~vilvHGe~~~~~~l~~-------~~~~v~~p~~~e~i~l~~~~~~~~v~l~~~l~~~l~~ 454 (575)
.+.+|.+++..+|.+++|+++|||||..+..+.++. ..+.|++|+.||+|+++++.+.++|+|++.|+++|+|
T Consensus 545 eGisDgrSik~ii~ql~Pr~lIlvh~s~e~~r~~~~~c~~l~~~~~~vyaP~~~e~idvtsd~~~y~V~L~d~l~~~l~f 624 (764)
T KOG1135|consen 545 EGISDGRSIKKIIAQLSPRKLILVHGSAEDTRDLKHTCASLGCFTIDVYAPKSGEIIDVTSDVHIYQVKLSDGLLSNLQF 624 (764)
T ss_pred eccccchhHHHHHhccCccEEEEecCCchhhHHHHHHHHhcCCCcceeecccccceEEeeehheeeeeEechhhhhhhee
Confidence 999999999999999999999999999998888762 2368999999999999999999999999999999999
Q ss_pred hhhcccCcceeeEEEEEEEe----CC-----------------------------eeeeecCCCCCCCCCCCCceEecCC
Q 008169 455 RMLKQKKLNITRLKGRLFVN----HG-----------------------------KHQLLPENEPGGSSQTRPFLHWGSP 501 (575)
Q Consensus 455 ~~~~~~~~~~a~v~g~l~~~----~~-----------------------------~~~l~~~~~~~~~~~~~~~~~~g~~ 501 (575)
++++ ..++||+.|++.++ |+ +..|.|.+. .+.+.|+++++|++
T Consensus 625 ~k~~--~~evawid~~l~~~~~~~d~~~~~e~dv~~~~~~s~~~~~~e~et~~~~~l~l~pl~~--~~~P~h~~v~igd~ 700 (764)
T KOG1135|consen 625 KKVG--DAEVAWIDGVLDMRKKAIDGDKTVEMDVVRLVKESVPEVNNEKETGSRSKLTLLPLPG--AEIPRHQAVLIGDL 700 (764)
T ss_pred eecc--cceeeeeehhhccccccccccccccceecchhhccccccccccccccccccccccCCc--ccCCcccceeecCh
Confidence 9996 47999999999322 11 022222222 23456889999999
Q ss_pred ChHHHHHHHHHCCCceEEeeccccCcCCCceEEEEeCCCCcEEEEcCceeeEecC-CHHHHHHHHHHH
Q 008169 502 DPENLLAELSKMGINGSVERCMTDAESEDGFTVKVQDPEKSMIEVRAAVTVISAA-DKNLASRIVKAM 568 (575)
Q Consensus 502 ~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~I~~~-~~~~R~~l~~~~ 568 (575)
++++|+|.|..+|++++|.+|.+ .+++.-|.+|....|.|.+||+ .|+ +|++|+++||.+
T Consensus 701 rLadfKq~L~~kgi~aEf~gggl---L~~~g~VavRk~d~G~i~ieG~----lse~fy~iR~lvYdq~ 761 (764)
T KOG1135|consen 701 RLADFKQLLTEKGIQAEFKGGGL---LVCNGCVAVRKVDTGKITIEGC----LSEDFYKIRDLVYDQL 761 (764)
T ss_pred hHHHHHHHHHhCCeEEEEecCcE---EEECCEEEEEEcCCceEEEecc----chHHHHHHHHHHHHHh
Confidence 99999999999999999999875 7788888999888899999999 999 999999999975
No 4
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=1.6e-73 Score=591.16 Aligned_cols=393 Identities=17% Similarity=0.259 Sum_probs=333.1
Q ss_pred cccccchhccccCCcceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhHhhhhccCCCCC
Q 008169 2 GMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSE 81 (575)
Q Consensus 2 ~~~aLP~l~~~~gf~g~IY~T~pT~~l~~llL~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 81 (575)
|.++|||+++++.|+|++|||+||+++++++|.|++++... +.+
T Consensus 78 h~aslp~~~qkTsf~grvfmth~TkAi~kwllsdyvrvs~~------------------------------------s~~ 121 (668)
T KOG1137|consen 78 HAASLPFTLQKTSFIGRVFMTHPTKAIYKWLLSDYVRVSNR------------------------------------SGD 121 (668)
T ss_pred hcccccceeeeccccceeEEecchHHHHHhhhhcceEeeec------------------------------------cCc
Confidence 67899999999999999999999999999999999976521 111
Q ss_pred CCCCCchH--HHHHHHHhcceEecCCCEEEeCCceEEEeecCCccccceEEEEEeCCeeEEEecCCCCC-CCCCCCCCCC
Q 008169 82 LGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFA-SGHAMDFDYR 158 (575)
Q Consensus 82 ~~~~~~ly--~dv~~~~~~i~~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s~~-~~~~~~~d~~ 158 (575)
..|| .|+.++++|+++++|+|+++++| ++|+||.|||+||+||+.+++++-+|+||||++.. +||...++.+
T Consensus 122 ----~~Ly~e~dl~~s~dKie~idfhe~~ev~g-Ikf~p~~aGhVlgacMf~veiagv~lLyTGd~sreeDrhl~aae~P 196 (668)
T KOG1137|consen 122 ----DRLYTEGDLMESMDKIETIDFHETVEVNG-IKFWPYHAGHVLGACMFMVEIAGVRLLYTGDYSREEDRHLIAAEMP 196 (668)
T ss_pred ----cccccchhHHHhhhhheeeeeccccccCC-eEEEeeccchhhhheeeeeeeceEEEEeccccchhhcccccchhCC
Confidence 2688 99999999999999999999985 99999999999999999999999999999999986 9999988875
Q ss_pred CCCCCcEEEEcCCCCCCCCccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHHHhcCCeEEEecCChhH
Q 008169 159 AIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGV 238 (575)
Q Consensus 159 ~l~~~DvLI~e~~st~~~~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~tl~~GG~VLIP~fa~GR 238 (575)
+. ++|+||+| |||+ ...|+++.+ |.++|+..|+.++.+||+||||+||+||
T Consensus 197 ~~-~~dvli~e--styg------------------------v~~h~~r~~--re~rlt~vIh~~v~rGGR~L~PvFAlgr 247 (668)
T KOG1137|consen 197 PT-GPDVLITE--STYG------------------------VQIHEPREE--REGRLTWVIHSTVPRGGRVLIPVFALGR 247 (668)
T ss_pred CC-CccEEEEE--eeee------------------------EEecCchHH--hhhhhhhhHHhhccCCCceEeeeeecch
Confidence 54 78999999 5543 444554444 4578999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC-Cc-ccEEEECchHHHHHHHHHHhHHhhhHHHHHhhccCCCCCcchhhhhcccccccCCCCChh
Q 008169 239 FLQLLEQIAIFMECSS-LK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPK 316 (575)
Q Consensus 239 ~qELl~~L~~~~~~~~-l~-vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~e~pF~~~~l~~~~~l~~~~~i~~~~ 316 (575)
+|||+++|++||.++. +. +|||+.|++|++|+..||+|+..||+++++ .+.-.|||.+.. .+.+++.+
T Consensus 248 AqELllildeyw~~h~~l~~iPiyyaSslakkcm~vfQtyv~~mnd~Irk-~~~~~Npfifk~---------vs~L~~~D 317 (668)
T KOG1137|consen 248 AQELLLILDEYWGNHVDLRDIPIYYASSLAKKCMGVFQTYVNMMNDRIRK-QSALRNPFIFKH---------VSILRTGD 317 (668)
T ss_pred HHHHHHHHHHHhhcchhhhcCceeehhhHHHhhhhhHheehhhhhhhhHH-hhccCCceEeec---------cccccccc
Confidence 9999999999999984 55 999999999999999999999999999976 455578875421 12222212
Q ss_pred hhhccCCCEEEEecCCCCCcchHHHHHHHHhCCCCCcEEecCccchhhc----c----------CCCceeeeEEEEeecc
Q 008169 317 LLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELA----V----------LPFKPISMKVLQCSFL 382 (575)
Q Consensus 317 ~~~~~~~P~VV~as~gml~~G~s~~~l~~~~~d~~N~Iil~g~~~~~~~----l----------~~~~~v~~~v~~~~fs 382 (575)
-.+.-+|||+.|+||||+.|.|+++|++||+|++|++|++||+..++. + ++..|++|+|++++|+
T Consensus 318 -~f~D~gP~vv~aspgmlqsglSRelfe~wcsD~kN~vlipGy~Vegtlak~il~eP~eI~a~~G~klp~~m~V~~isFa 396 (668)
T KOG1137|consen 318 -WFDDEGPSVVMASPGMLQSGLSRELFERWCSDSKNAVLIPGYCVEGTLAKDILSEPKEIMAMNGRKLPLRMQVEYISFA 396 (668)
T ss_pred -cccccCCceeEeCchHhhhhhhHHHHHHhCCCCCCcEEeccceechhHHHHHhcCchhhhcccCCcccccceEEEEEee
Confidence 225679999999999999999999999999999999999999877532 1 4567999999999999
Q ss_pred cCCChhhHHHHHhhcCCCEEEEecCCccccccccc----------CCceeeecCCCcEEEeCCCCeeEEEEecHHHHhhh
Q 008169 383 SGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDV----------TSFSVSHYSENETIHIPSLKESAELEIAADIASKF 452 (575)
Q Consensus 383 aHaD~~~l~~~i~~~~P~~vilvHGe~~~~~~l~~----------~~~~v~~p~~~e~i~l~~~~~~~~v~l~~~l~~~l 452 (575)
||.|+.|..++++.++|+++|+||||.+.|.+|+. ..+.++.|+|+|.+++.+.++. .++....+|.
T Consensus 397 Ahvdy~q~s~fi~~i~~~~lilVHGE~neM~rLKs~L~~~f~d~kv~i~v~tprn~e~v~l~f~~ek-lak~~G~~a~-- 473 (668)
T KOG1137|consen 397 AHVDYLQNSEFIADITPPHLILVHGEANEMMRLKSALEAAFRDGKVPIDVSTPRNCEDVELYFPGEK-LAKTTGSLAE-- 473 (668)
T ss_pred echhhhhhHHHHHHhCCCeEEEEecccchhHHHHHHHHHHhccCCCcceecCCccceEeeeecCcch-hhhhhhcccc--
Confidence 99999999999999999999999999999999971 3568999999999999998871 1222222222
Q ss_pred hhhhhcccCcceeeEEEEEEEeCCeeeeecCCCC
Q 008169 453 QWRMLKQKKLNITRLKGRLFVNHGKHQLLPENEP 486 (575)
Q Consensus 453 ~~~~~~~~~~~~a~v~g~l~~~~~~~~l~~~~~~ 486 (575)
. + ...+++|.|+.++++|.++++.+-
T Consensus 474 ----~--p--~~~~~sgiLv~~~~~~~ils~edL 499 (668)
T KOG1137|consen 474 ----V--P--KEDRVSGILVSYGFSYAILSPEDL 499 (668)
T ss_pred ----C--C--ccceEEEEEEecCCceeeccHHHh
Confidence 1 1 126999999999999999887664
No 5
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=100.00 E-value=3.4e-68 Score=547.68 Aligned_cols=354 Identities=19% Similarity=0.273 Sum_probs=301.1
Q ss_pred cccccchhccccCCcceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhHhhhhccCCCCC
Q 008169 2 GMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSE 81 (575)
Q Consensus 2 ~~~aLP~l~~~~gf~g~IY~T~pT~~l~~llL~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 81 (575)
|-|-||||++ +||.||||||.||++|+-+|+.|++++.+. .+.
T Consensus 247 H~G~lP~Lfk-Ygy~GPVY~T~PTRDlm~LLq~Dyi~va~k-----------------------------------eg~- 289 (637)
T COG1782 247 HCGFLPLLFK-YGYDGPVYCTPPTRDLMVLLQLDYIEVAEK-----------------------------------EGG- 289 (637)
T ss_pred cccchhhhhh-cCCCCCeeeCCCcHHHHHHHHHHHHHHHHh-----------------------------------cCC-
Confidence 4578999999 799999999999999999999999998752 122
Q ss_pred CCCCCchH--HHHHHHHhcceEecCCCEEEeCCceEEEeecCCccccceEEEEEeCC--eeEEEecCCCCC-CCCCCCCC
Q 008169 82 LGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAK--GNIAYISGSNFA-SGHAMDFD 156 (575)
Q Consensus 82 ~~~~~~ly--~dv~~~~~~i~~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~--~~I~YtgD~s~~-~~~~~~~d 156 (575)
.|.| +||++++.+..+++|++.-++.+++++|||+|||+|||||..+.+++ ..|+||||+... ++...+++
T Consensus 290 ----~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NAGHILGSA~~HlHIGdGlyNi~yTGDfk~~~trLl~~A~ 365 (637)
T COG1782 290 ----EPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDGLYNIVYTGDFKFEKTRLLEPAN 365 (637)
T ss_pred ----CCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecccchhcceeeEEEecCCceeEEEecccccceeeecChhh
Confidence 4778 99999999999999999999999999999999999999999998864 799999999987 44444433
Q ss_pred CCCCCCCcEEEEcCCCCCCCCccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHHHhcCCeEEEecCCh
Q 008169 157 YRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRV 236 (575)
Q Consensus 157 ~~~l~~~DvLI~e~~st~~~~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~tl~~GG~VLIP~fa~ 236 (575)
..++..+.|||| +||+...+ .+.++++.| ++|.+.|.+|+++||+||||+||+
T Consensus 366 -n~FpRvEtlimE--sTYGg~~d----------------------~q~~R~eaE--~~L~~vi~~t~~rGGKvLIP~fAV 418 (637)
T COG1782 366 -NKFPRVETLIME--STYGGRDD----------------------VQPPREEAE--KELIKVINDTLKRGGKVLIPVFAV 418 (637)
T ss_pred -ccCcchhheeee--eccCCccc----------------------cCccHHHHH--HHHHHHHHHHHhcCCeEEEEeeec
Confidence 357789999999 78863211 122344444 679999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCc-ccEEEECchHHHHHHHHHHhHHhhhHHHHHhhc-cCCCCCcchhhhhcccccccCCCCC
Q 008169 237 GVFLQLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLF-SGDPLFAHVKLIKEKKIHVFPAVHS 314 (575)
Q Consensus 237 GR~qELl~~L~~~~~~~~l~-vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~-~~e~pF~~~~l~~~~~l~~~~~i~~ 314 (575)
||+||++..|+++++++.++ +|||++ +|..++++++..|+|||+...++.+| .++|||.... |..+.+
T Consensus 419 GR~QEvM~VLee~mr~g~ipe~PVYlD-GMI~EatAIhtaYPEyL~~~lr~~I~~~g~NPF~se~---------f~~V~~ 488 (637)
T COG1782 419 GRSQEVMIVLEEAMRKGLIPEVPVYLD-GMIWEATAIHTAYPEYLNKELRERIFHEGENPFLSEI---------FKRVEG 488 (637)
T ss_pred cccceehhHHHHHHhcCCCCCCceeee-eeeeehhhhhhcCHHhhhHHHHHHHhcCCCCCccccc---------eeecCC
Confidence 99999999999999999898 999965 89999999999999999999999998 4899996532 333433
Q ss_pred h---hhhhccCCCEEEEecCCCCCcchHHHHHHHHhCCCCCcEEecCccchhhcc----------------C--CCceee
Q 008169 315 P---KLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAV----------------L--PFKPIS 373 (575)
Q Consensus 315 ~---~~~~~~~~P~VV~as~gml~~G~s~~~l~~~~~d~~N~Iil~g~~~~~~~l----------------~--~~~~v~ 373 (575)
. +.......||||+||||||.||++++||++|++||+|+++|+||+.+++.. + ...+++
T Consensus 489 ~~~r~~i~~~~ep~iIlaTSGMlnGGPvveyfk~lA~DprntliFVgYQAeGTLGRriq~G~kEipi~~~~G~te~i~in 568 (637)
T COG1782 489 SDERQEIIESDEPAIILATSGMLNGGPVVEYFKHLAPDPKNTLIFVGYQAEGTLGRRIQSGAKEIPIPGEDGKTEVIKVN 568 (637)
T ss_pred hhHHHHHhcCCCCeEEEeccccccCCcHHHHHHHhCCCCCceEEEEEeccCcchhhhhhcCceecccccCCCCeEEEEEE
Confidence 2 334566899999999999999999999999999999999999997775321 0 124789
Q ss_pred eEEEEe-ecccCCChhhHHHHHhhc--CCCEEEEecCCcccccccc-----cCCceeeecCCCcEEEe
Q 008169 374 MKVLQC-SFLSGKKLQKVQPLLKIL--QPKLVLFPEEWRTHVSFSD-----VTSFSVSHYSENETIHI 433 (575)
Q Consensus 374 ~~v~~~-~fsaHaD~~~l~~~i~~~--~P~~vilvHGe~~~~~~l~-----~~~~~v~~p~~~e~i~l 433 (575)
|.|+.+ +||+|+|+.||+++++.+ +|++|+++|||+.++..|+ ...+..++|.|.|+|.+
T Consensus 569 MeV~tieGFSGHsdrrqL~~yvr~~~PkP~ki~~~HGe~sk~~~lA~si~~~~~i~t~ap~nLetiR~ 636 (637)
T COG1782 569 MEVETIEGFSGHSDRRQLMKYVRRMNPKPEKILLNHGEPSKCLDLASSIRRKFKIETYAPKNLETIRL 636 (637)
T ss_pred EEEEEecCcCCCccHHHHHHHHHhcCCCCceeEeecCChHHHHHHHHHHHhhcceeeeccccccceec
Confidence 999999 899999999999999998 5569999999999999998 35678899999999876
No 6
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=100.00 E-value=2.5e-63 Score=553.08 Aligned_cols=357 Identities=19% Similarity=0.261 Sum_probs=296.2
Q ss_pred cccccchhccccCCcceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhHhhhhccCCCCC
Q 008169 2 GMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSE 81 (575)
Q Consensus 2 ~~~aLP~l~~~~gf~g~IY~T~pT~~l~~llL~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 81 (575)
|+||||+|++ .||+||||||+||++++++++.|+++++.. .+.
T Consensus 241 HiG~LP~L~k-~g~~gpIY~T~pT~~l~~~ll~D~~~i~~~-----------------------------------~g~- 283 (630)
T TIGR03675 241 HSGLVPLLFK-YGYDGPVYCTPPTRDLMTLLQLDYIDVAQR-----------------------------------EGK- 283 (630)
T ss_pred HHhhHHHHHH-hCCCCceeecHHHHHHHHHHHHHHHHHHHh-----------------------------------cCC-
Confidence 6899999997 699999999999999999999999876531 011
Q ss_pred CCCCCchH--HHHHHHHhcceEecCCCEEEeCCceEEEeecCCccccceEEEEEeC--CeeEEEecCCCCC-CCCCCCCC
Q 008169 82 LGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGA--KGNIAYISGSNFA-SGHAMDFD 156 (575)
Q Consensus 82 ~~~~~~ly--~dv~~~~~~i~~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~--~~~I~YtgD~s~~-~~~~~~~d 156 (575)
.++| +|++.++.++.+++|++++++.+++++++++|||++|||+|.++++ ..+|+||||++.. +++..++.
T Consensus 284 ----~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~AGHilGsa~~~~~i~dg~~~IvYTGD~~~~~~~ll~~a~ 359 (630)
T TIGR03675 284 ----KPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNAGHILGSAIAHLHIGDGLYNIVYTGDFKYEKTRLLDPAV 359 (630)
T ss_pred ----CCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecCccccCceEEEEEECCCCEEEEEeCCCCCCCCcCccchh
Confidence 3678 9999999999999999999998789999999999999999998874 3799999999976 44444332
Q ss_pred CCCCCCCcEEEEcCCCCCCCCccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHHHhcCCeEEEecCCh
Q 008169 157 YRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRV 236 (575)
Q Consensus 157 ~~~l~~~DvLI~e~~st~~~~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~tl~~GG~VLIP~fa~ 236 (575)
..+.++|+||+| +||+...+ .+++++ +..++|++.|.+|+++||+||||+||+
T Consensus 360 -~~~~~vD~LI~E--STYg~~~~----------------------~~~~r~--~~e~~l~~~I~~tl~~gG~VLIP~fav 412 (630)
T TIGR03675 360 -NKFPRVETLIME--STYGGRDD----------------------YQPSRE--EAEKELIKVVNETIKRGGKVLIPVFAV 412 (630)
T ss_pred -hcCCCCCEEEEe--CccCCCCC----------------------CCCCHH--HHHHHHHHHHHHHHhCCCEEEEEechh
Confidence 234679999999 67752100 022233 344779999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCc-ccEEEECchHHHHHHHHHHhHHhhhHHHHHhhc-cCCCCCcchhhhhcccccccCCCCC
Q 008169 237 GVFLQLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLF-SGDPLFAHVKLIKEKKIHVFPAVHS 314 (575)
Q Consensus 237 GR~qELl~~L~~~~~~~~l~-vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~-~~e~pF~~~~l~~~~~l~~~~~i~~ 314 (575)
||+|||+++|+++|+++.++ +|||++| |+.+++++|+.|+|||++..++.++ .+++||.+..+ +.+.+...
T Consensus 413 GR~QEll~~L~~~~~~g~lp~~pIy~dg-~~~~~t~i~~~~~e~l~~~~~~~i~~~~~npf~~~~~------~~v~~~~~ 485 (630)
T TIGR03675 413 GRAQEVMLVLEEAMRKGLIPEVPVYLDG-MIWEATAIHTAYPEYLNKELRERIFHEGENPFLSEIF------VRVEGSDE 485 (630)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEc-hHHHHHHHHHHhHHHhCHHHHHHHhhcCCCcccCCce------EEeCCHHH
Confidence 99999999999999988886 9999986 9999999999999999998877766 57889865432 22232221
Q ss_pred hhhhhccCCCEEEEecCCCCCcchHHHHHHHHhCCCCCcEEecCccchhhc-------------cC----CCceeeeEEE
Q 008169 315 PKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELA-------------VL----PFKPISMKVL 377 (575)
Q Consensus 315 ~~~~~~~~~P~VV~as~gml~~G~s~~~l~~~~~d~~N~Iil~g~~~~~~~-------------l~----~~~~v~~~v~ 377 (575)
...+....+|||||||||||++|++++||++|++||+|+|+|+||+.+++. .+ ...+++|+|+
T Consensus 486 ~~~i~~~~~p~VIiatsGMl~gG~~~~~l~~l~~d~kn~IifvGyqa~gTlGr~l~~g~~~i~i~g~~~~~~i~v~~~V~ 565 (630)
T TIGR03675 486 RREIIESDEPAIILATSGMLNGGPVVEYLKLLAPDPRNSLVFVGYQAEGTLGRRIQSGWREIPLTDEGKTETIKINMEVE 565 (630)
T ss_pred HHHHhcCCCCEEEEECCCCCCcchHHHHHHHHcCCCCCeEEEeCCCCCCchHHHHhcCCcEEEecCCCCceEEEEEEEEE
Confidence 223445689999999999999999999999999999999999999877431 12 3468999999
Q ss_pred Eee-cccCCChhhHHHHHhhcCC--CEEEEecCCcccccccc-----cCCceeeecCCCcEEEe
Q 008169 378 QCS-FLSGKKLQKVQPLLKILQP--KLVLFPEEWRTHVSFSD-----VTSFSVSHYSENETIHI 433 (575)
Q Consensus 378 ~~~-fsaHaD~~~l~~~i~~~~P--~~vilvHGe~~~~~~l~-----~~~~~v~~p~~~e~i~l 433 (575)
.++ ||||||++||++|++.++| ++|+|||||++++..|+ +.++++++|++||++++
T Consensus 566 ~~~gfSaHaD~~~L~~~v~~~~p~p~~v~lvHGe~~~~~~la~~l~~~~~~~~~~P~~~e~~~~ 629 (630)
T TIGR03675 566 TVEGFSGHSDRRQLMNYVRRMQPKPEKILLNHGEPSKILDLASSIYKKFNIETYAPKNLETIRL 629 (630)
T ss_pred EeCCccccCCHHHHHHHHHhcCCCCCEEEEEcCCHHHHHHHHHHHHHHhCCcEEeCCCCCEEEe
Confidence 995 9999999999999999955 89999999999999997 24789999999999986
No 7
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-54 Score=464.64 Aligned_cols=342 Identities=16% Similarity=0.201 Sum_probs=286.0
Q ss_pred cccccchhccccCCcceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhHhhhhccCCCCC
Q 008169 2 GMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSE 81 (575)
Q Consensus 2 ~~~aLP~l~~~~gf~g~IY~T~pT~~l~~llL~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 81 (575)
|++|||+++.. +|+++||||.||+.++++++.|+++++.. ..
T Consensus 62 H~g~lp~l~~~-~~~~~v~aT~~T~~l~~~~l~d~~~~~~~-------------------------------------~~ 103 (427)
T COG1236 62 HIGALPYLVRN-GFEGPVYATPPTAALLKVLLGDSLKLAEG-------------------------------------PD 103 (427)
T ss_pred hhcccHHHHHh-ccCCceeeccCHHHHHHHHHHHHHhhhcC-------------------------------------CC
Confidence 68999999995 69999999999999999999999987520 01
Q ss_pred CCCCCchH--HHHHHHHhcceEecCCCEEEeCCceEEEeecCCccccceEEEEEeCCeeEEEecCCCCC-CCCCCCCCCC
Q 008169 82 LGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFA-SGHAMDFDYR 158 (575)
Q Consensus 82 ~~~~~~ly--~dv~~~~~~i~~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s~~-~~~~~~~d~~ 158 (575)
.++| .|++.+++++++++|+|++++.+ ++|++|+|||++|||+|.++.++.+|+||||++.. +++..+++..
T Consensus 104 ----~~~~~~~d~~~~~~~~~~~~yg~~~~v~~-~~v~~~~AGHilGsa~~~le~~~~~ilytGD~~~~~~~l~~~a~~~ 178 (427)
T COG1236 104 ----KPPYSEEDVERVPDLIRPLPYGEPVEVGG-VKVTFYNAGHILGSAAILLEVDGGRILYTGDVKRRKDRLLNGAELP 178 (427)
T ss_pred ----CCCCchhHHHhhHhhEEEecCCCceEeee-EEEEEecCCCccceeEEEEEeCCceEEEEeccCCCcCCCCCccccC
Confidence 3567 99999999999999999999986 99999999999999999999999999999999975 6777776654
Q ss_pred CCCCCcEEEEcCCCCCCCCccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHHHhcCCeEEEecCChhH
Q 008169 159 AIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGV 238 (575)
Q Consensus 159 ~l~~~DvLI~e~~st~~~~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~tl~~GG~VLIP~fa~GR 238 (575)
.. +|+||+| +||+ .+.++++++.++. |.+.|.+++.+||+||||+||+||
T Consensus 179 ~~--~DvLI~E--sTYg------------------------~~~~~~r~~~e~~--f~~~v~~~l~~GG~vlipafa~gr 228 (427)
T COG1236 179 PC--IDVLIVE--STYG------------------------DRLHPNRDEVERR--FIESVKAALERGGTVLIPAFALGR 228 (427)
T ss_pred CC--CcEEEEe--cccC------------------------CccCCCHHHHHHH--HHHHHHHHHhCCCEEEEecccccH
Confidence 33 7999999 5654 4445556666644 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcccEEEECchHHHHHHHHHHhHHhhhHHHHHhhccCCCCCcchhhhhcccccccCCCCChhhh
Q 008169 239 FLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLL 318 (575)
Q Consensus 239 ~qELl~~L~~~~~~~~l~vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~e~pF~~~~l~~~~~l~~~~~i~~~~~~ 318 (575)
+||||.+|+.+|.++ ++|||++|++|..+..+++.+.+|++.......... |...+ +.......
T Consensus 229 aQEll~~L~~~~~~~--~~pi~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~-----------~~~~~~~~ 292 (427)
T COG1236 229 AQELLLILRELGFAG--DYPIYVDGPIARVALAYAKYPIGLDLPDLLKVAESR---FRFVE-----------SRRNSMRE 292 (427)
T ss_pred HHHHHHHHHHHhccC--CCCeEeccHHHHHHHHHHHhchhccChHHHHHHHhh---ccccc-----------chhhhhhh
Confidence 999999999999887 699999999999999999999999988765544321 32221 11111234
Q ss_pred hccCCCEEEEecCCCCCcchHHHHHHHHhCCCCCcEEecCccchhhc-------------cCCCceeeeEEEEeecccCC
Q 008169 319 MNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELA-------------VLPFKPISMKVLQCSFLSGK 385 (575)
Q Consensus 319 ~~~~~P~VV~as~gml~~G~s~~~l~~~~~d~~N~Iil~g~~~~~~~-------------l~~~~~v~~~v~~~~fsaHa 385 (575)
....+|+||+|++|||.+|+++++++.|+++++|.++|+||+..+.. .+...+++++|+.+.||+|+
T Consensus 293 ~~~~~~~vi~a~~gm~~~g~~~~~~~~~~~~~~n~~~l~~~~~~~t~gr~~~~~~~~~~~~~~~i~~~~~ve~~~~s~Ha 372 (427)
T COG1236 293 GIDKGPAVVLAAPGMLKGGRSRYYLKHLLSDEKNWVLLPGYQAEGTLGRVLLEGGTSVHIKGIEIKVKARVEELDFSAHA 372 (427)
T ss_pred hccCCceEEEEecccccCCcHHHHHHHHhcCCcceEEEcccccCCcchhHHhcCCcEEeecceeecccceEEEecccccc
Confidence 46789999999999999999999999999999999999999777531 12356789999999999999
Q ss_pred ChhhHHHHHhhcCCCEEEEecCCcccccccc----c--CCc-eeeecCCCcEEE
Q 008169 386 KLQKVQPLLKILQPKLVLFPEEWRTHVSFSD----V--TSF-SVSHYSENETIH 432 (575)
Q Consensus 386 D~~~l~~~i~~~~P~~vilvHGe~~~~~~l~----~--~~~-~v~~p~~~e~i~ 432 (575)
|+.+|.+||+...|++|+++||++..+..+. + .++ .++.|.+++.+.
T Consensus 373 d~~~l~~~i~~~~~~~v~~~Hg~~~~~~~~~~~~~~e~~~~~~~~~p~~~~~~~ 426 (427)
T COG1236 373 DGDELLEFIKDISPPKVVLVHGEPEYGAALRARLLEELIGIRELELPANGEEYE 426 (427)
T ss_pred CcHHHHHHHhcCCCceEEEEeCCchhhhHHHHHHHHhhCCcceeecCCCccccC
Confidence 9999999999999999999999999763333 2 344 478888887654
No 8
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.93 E-value=1.8e-24 Score=233.78 Aligned_cols=272 Identities=13% Similarity=0.119 Sum_probs=188.5
Q ss_pred ceEecCCCEEEeCCceEEEeecCCc-cccceEEEEEeCCeeEEEecCCCCCCCCCC--CCCCC-----CCCCCcEEEEcC
Q 008169 99 VQTLRFGEEACYNGILIIKAFSSGL-DIGACNWIISGAKGNIAYISGSNFASGHAM--DFDYR-----AIQGSDLILYSD 170 (575)
Q Consensus 99 i~~v~y~q~~~l~g~i~it~~~AGH-iLGsa~~~I~~~~~~I~YtgD~s~~~~~~~--~~d~~-----~l~~~DvLI~e~ 170 (575)
++.+++++++++.+++++++++++| +.||+++.++.++.+|+||||+........ +.|.. .-+++|+||+|
T Consensus 112 ~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~~~~~ivytGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~E- 190 (422)
T TIGR00649 112 LLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHTPLGYIVYTGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISD- 190 (422)
T ss_pred eEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEeCCcEEEECCCcCCCCCccCCcccCHHHHHhhcccCeEEEEEC-
Confidence 5678999999996569999999999 579999999998899999999886532222 22321 12468999999
Q ss_pred CCCCCCCccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHHH-hcCCeEEEecCC--hhHHHHHHHHHH
Q 008169 171 LSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSV-KAGGSVLIPINR--VGVFLQLLEQIA 247 (575)
Q Consensus 171 ~st~~~~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~tl-~~GG~VLIP~fa--~GR~qELl~~L~ 247 (575)
+|+... +. +. ..+. .+.+.+.+++ +.+|++++|+|+ ++|+|+++.+..
T Consensus 191 -sT~~~~------------~~------~~------~~e~----~~~~~i~~~~~~~~~~viv~~fa~~~~R~~~i~~~a~ 241 (422)
T TIGR00649 191 -STNVEN------------PG------FT------PSEA----KVLEQLNDIFKNAKGRVIVATFASNIHRVQQLIQIAR 241 (422)
T ss_pred -CCCCCC------------CC------CC------CCHH----HHHHHHHHHHHhCCCEEEEEEccccHHHHHHHHHHHH
Confidence 565410 00 00 0111 1333455555 568999999999 999999999886
Q ss_pred HHHHhCCCcccEEEECchHHHHHHHHHHhHHhhhHHHHHhhccCCCCCcchhhhhcccccccCCCCChhhhhc-cCCCEE
Q 008169 248 IFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMN-WQEPCI 326 (575)
Q Consensus 248 ~~~~~~~l~vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~e~pF~~~~l~~~~~l~~~~~i~~~~~~~~-~~~P~V 326 (575)
++ ..||++.+.+..++++.++.+ .|++. +. . .++ ..+.+.. .++++|
T Consensus 242 ~~------~r~v~v~g~~~~~~~~~~~~~-g~~~~--------~~--~---~~~------------~~~~i~~~~~~~~v 289 (422)
T TIGR00649 242 KQ------GRKFAVYGRSMEHLFGIARRL-GLIKN--------PH--N---NFI------------SLKEVNNSPDENYL 289 (422)
T ss_pred Hh------CCEEEEECccHHHHHHHHHHc-CCccC--------Cc--c---cee------------CHHHHhcCCcccEE
Confidence 64 358999988888888776543 33321 00 0 000 0122233 357899
Q ss_pred EEecCCCCCcchHHHHHHHHhCCC--------CCcEEecCccchhh------c-cC-CCceeeeEEEE-eecccCCChhh
Q 008169 327 VFSPHWSLRLGPTIHLLRRWSGDH--------NSLLVLENEVDAEL------A-VL-PFKPISMKVLQ-CSFLSGKKLQK 389 (575)
Q Consensus 327 V~as~gml~~G~s~~~l~~~~~d~--------~N~Iil~g~~~~~~------~-l~-~~~~v~~~v~~-~~fsaHaD~~~ 389 (575)
|++|++ ++|+ ..+|.+++.++ .++||++..--++. . +. ....+.+++.+ +.||+||++++
T Consensus 290 ii~tg~--~g~~-~~~l~~~~~~~~~~i~l~~~d~vi~s~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~h~SgHa~~~d 366 (422)
T TIGR00649 290 IITTGS--QGEP-YAALTRIANNEHEQIRIRKGDTVVFSAPPIPGNENIAVSILLDIRLNEVGARVIKRIHVSGHASQED 366 (422)
T ss_pred EEEeCC--CCcH-HHHHHHHhCCCCCcEEeCCCCEEEEECCCCCcHHHHHHHHHHHHHHHhcCCEEEeceEecCCCCHHH
Confidence 999887 7777 77788898875 36788753111110 1 11 12345666655 78999999999
Q ss_pred HHHHHhhcCCCEEEEecCCcccccccc----cCCc---eeeecCCCcEEEeCC
Q 008169 390 VQPLLKILQPKLVLFPEEWRTHVSFSD----VTSF---SVSHYSENETIHIPS 435 (575)
Q Consensus 390 l~~~i~~~~P~~vilvHGe~~~~~~l~----~~~~---~v~~p~~~e~i~l~~ 435 (575)
|..+++.++|+.+|.||||......++ +.|+ +++.|+||+.+.+..
T Consensus 367 l~~~i~~~~Pk~~ipvHge~~~~~~~~~~a~~~g~~~~~~~~~~nG~~~~~~~ 419 (422)
T TIGR00649 367 HKLLLRLLKPKYIIPVHGEYRMLINHTKLAEEEGYPGENIFILRNGDVLEING 419 (422)
T ss_pred HHHHHHHhCCCEEEecCCcHHHHHHHHHHHHHcCCCcccEEEecCCcEEEecC
Confidence 999999999999999999987766554 3565 699999999998853
No 9
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=99.89 E-value=4.6e-23 Score=185.65 Aligned_cols=118 Identities=25% Similarity=0.412 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHhCCC--cccEEEECchHHHHHHHHHHhHHhhhHHHHHhhccCCC-CCcchhhhhcccccccCCCCCh
Q 008169 239 FLQLLEQIAIFMECSSL--KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDP-LFAHVKLIKEKKIHVFPAVHSP 315 (575)
Q Consensus 239 ~qELl~~L~~~~~~~~l--~vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~e~-pF~~~~l~~~~~l~~~~~i~~~ 315 (575)
+||||++|+++|+++.+ ++|||++||+|.+++++|+.+.|||+++++++....+. ||.+...++ .+...
T Consensus 1 ~qEll~~L~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 72 (126)
T PF10996_consen 1 AQELLLILDEYWKEGKLPRDVPIYVDSPMAAKVLEYYKSYPEWLSESIQRKFEDKEDNPFDNFKFVK--------SVDES 72 (126)
T ss_dssp HHHHHHHHHHHHCTTSSGTTSEEEEESTCHHHHHHHHHHCGGGS-HHHHHHHHTTSTTTTTTEEEEE--------SHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCCcEEEEChHHHHHHHHHHHHHHHHCHHHHHHHHhcCCCCCCCeEEec--------ccccc
Confidence 79999999999999986 49999999999999999999999999997765554333 675544332 22212
Q ss_pred hhhhccCCCEEEEecCCCCCcchHHHHHHHHhCCCCCcEEecCccchhh
Q 008169 316 KLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAEL 364 (575)
Q Consensus 316 ~~~~~~~~P~VV~as~gml~~G~s~~~l~~~~~d~~N~Iil~g~~~~~~ 364 (575)
..+....+|||||||+|||++|+|+++|++|++||+|+||||||+++++
T Consensus 73 ~~l~~~~~p~Vvias~gml~~G~s~~~l~~~~~d~~n~Ii~~gy~~~~T 121 (126)
T PF10996_consen 73 KELNALSGPKVVIASSGMLEGGRSRHYLKRLASDPRNTIIFTGYQAPGT 121 (126)
T ss_dssp HHHHHSCSSEEEEESSTTSSSSHHHHHHHHHTTSTTSEEEESSS--TTS
T ss_pred cccccCCCCeEEEeCCCCCCCCHHHHHHHHHcCCCCCeEEEecCCCCCC
Confidence 2344456999999999999999999999999999999999999988754
No 10
>PF13299 CPSF100_C: Cleavage and polyadenylation factor 2 C-terminal
Probab=99.44 E-value=2.2e-13 Score=127.43 Aligned_cols=117 Identities=16% Similarity=0.263 Sum_probs=90.5
Q ss_pred EEecHHHHhhhhhhhhcccCcceeeEEEEEEEeCC---------------eeeeecCCC------C--------------
Q 008169 442 LEIAADIASKFQWRMLKQKKLNITRLKGRLFVNHG---------------KHQLLPENE------P-------------- 486 (575)
Q Consensus 442 v~l~~~l~~~l~~~~~~~~~~~~a~v~g~l~~~~~---------------~~~l~~~~~------~-------------- 486 (575)
|+|+++|+++|+|+.++ +.++|||+|.|...+. ...+.+... .
T Consensus 1 VkL~D~Lv~~Lkwq~v~--~~eVa~V~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 78 (161)
T PF13299_consen 1 VKLSDSLVSSLKWQKVR--DYEVAWVDGRLEGSEDPDAIENAEEEINSNTEFSLKPVEEEGTETENKASKKEQSPELDVL 78 (161)
T ss_pred CCCCHHHHhhCCceecC--CCEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccchhhhcc
Confidence 57899999999999994 8999999999994211 011111000 0
Q ss_pred -------CCCCCCCCceEecCCChHHHHHHHHHCCCceEEe-eccccCcCCCceEEEEeCCCCcEEEEcCceeeEecC-C
Q 008169 487 -------GGSSQTRPFLHWGSPDPENLLAELSKMGINGSVE-RCMTDAESEDGFTVKVQDPEKSMIEVRAAVTVISAA-D 557 (575)
Q Consensus 487 -------~~~~~~~~~~~~g~~~~~~~~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~I~~~-~ 557 (575)
....+.|+++++|+++|.+|++.|.+.|++++|. +|++ .| +..|.||..+++.|.|||+ .|+ |
T Consensus 79 ~~~~~~~~~~~~~~~~~~iGd~rL~~lk~~L~~~g~~aEF~g~G~L---v~-~~~V~VrK~~~G~i~ieG~----~~~~y 150 (161)
T PF13299_consen 79 PTLEALPSSERPGHQSLFIGDLRLSDLKQALQSAGIQAEFRGEGVL---VC-NGGVAVRKSEDGRIVIEGC----LSEDY 150 (161)
T ss_pred cccccccccccCCCCceecCcccHHHHHHHHHHCCCceEEeeCCeE---EE-CCEEEEEEcCCCCEEEEec----CchhH
Confidence 0012246889999999999999999999999999 7775 65 4457888778899999997 999 9
Q ss_pred HHHHHHHHHHH
Q 008169 558 KNLASRIVKAM 568 (575)
Q Consensus 558 ~~~R~~l~~~~ 568 (575)
|++|++||+.+
T Consensus 151 y~VR~~iy~~~ 161 (161)
T PF13299_consen 151 YKVRKLIYEQL 161 (161)
T ss_pred HHHHHHHHhhC
Confidence 99999999863
No 11
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.38 E-value=9.7e-11 Score=128.68 Aligned_cols=317 Identities=14% Similarity=0.170 Sum_probs=188.1
Q ss_pred cccccchhccccCCcceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhHhhhhccCCCCC
Q 008169 2 GMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSE 81 (575)
Q Consensus 2 ~~~aLP~l~~~~gf~g~IY~T~pT~~l~~llL~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 81 (575)
|+||||||..+.+| .|||+|+.|.+|.+.=+++.-. .
T Consensus 79 HIGaip~ll~~~~~-~piy~s~lt~~Li~~k~~~~~~-----------------------------------------~- 115 (555)
T COG0595 79 HIGALPYLLKQVLF-APIYASPLTAALIKEKLKEHGL-----------------------------------------F- 115 (555)
T ss_pred hccchHHHHhcCCc-CceecCHhhHHHHHHHHHHhcc-----------------------------------------c-
Confidence 78999999985443 9999999999988765552100 0
Q ss_pred CCCCCchHHHHHHHHhcceEecCCCEEEeCCceEEEeecCCcc-ccceEEEEEeCCeeEEEecCCCCCCCCCC--CCCCC
Q 008169 82 LGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLD-IGACNWIISGAKGNIAYISGSNFASGHAM--DFDYR 158 (575)
Q Consensus 82 ~~~~~~ly~dv~~~~~~i~~v~y~q~~~l~g~i~it~~~AGHi-LGsa~~~I~~~~~~I~YtgD~s~~~~~~~--~~d~~ 158 (575)
.-...++.++.+..+++ +.+.++|++-=|. .+|+.+.|+++...|+||||+....+... +.|..
T Consensus 116 ------------~~~~~~~ev~~~~~i~~-~~~~v~f~~vtHSIPds~g~~i~Tp~G~Iv~TGDFk~d~~~~~g~~~d~~ 182 (555)
T COG0595 116 ------------KNENELHEVKPGSEIKF-GSFEVEFFPVTHSIPDSLGIVIKTPEGNIVYTGDFKFDPTPVDGEPTDLA 182 (555)
T ss_pred ------------cccCceEEeCCCCeEEe-CcEEEEEEeecccCccceEEEEECCCccEEEeCCEEecCCcCCCCcCCHH
Confidence 01234568888888998 4699999999885 57999999999999999999986532222 22332
Q ss_pred C-----CCCCcEEEEcCCCCCCCCccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHHHhcCCeEEEec
Q 008169 159 A-----IQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPI 233 (575)
Q Consensus 159 ~-----l~~~DvLI~e~~st~~~~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~tl~~GG~VLIP~ 233 (575)
. -+++++||++ ||-. .++.. + ..|++-.+.+.+.+.++ .|.|++-+
T Consensus 183 r~~~~g~eGVl~Lisd--sTna------------~~pg~--------t----~SE~~v~~~l~~i~~~a---~grVIv~t 233 (555)
T COG0595 183 RLAEIGKEGVLALISD--STNA------------ENPGF--------T----PSESEVGENLEDIIRNA---KGRVIVTT 233 (555)
T ss_pred HHHHhccCCcEEEEeC--Cccc------------CCCCC--------C----CCHHHHHHHHHHHHHhC---CCcEEEEE
Confidence 1 1368899999 3432 11110 0 12233223344444443 79999999
Q ss_pred CCh--hHHHHHHHHHHHHHHhCCCcccEEEECchHHHHHHHHHHhHHhhhHHHHHhhccCCCCCcchhhhhcccccccCC
Q 008169 234 NRV--GVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPA 311 (575)
Q Consensus 234 fa~--GR~qELl~~L~~~~~~~~l~vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~e~pF~~~~l~~~~~l~~~~~ 311 (575)
||. +|.|.++..=.++ +-++.+.+--..+....++...-|-.. ++.| +..
T Consensus 234 faSni~Ri~~i~~~A~~~------gR~vvv~GrSm~~~~~~a~~lg~~~~~---------~~~~-----i~~-------- 285 (555)
T COG0595 234 FASNIERIQTIIDAAEKL------GRKVVVTGRSMERLIAIARRLGYLKLP---------DESF-----IEI-------- 285 (555)
T ss_pred chhhHHHHHHHHHHHHHc------CCeEEEEcHhHHHHHHHHhhcccccCc---------cccc-----cCH--------
Confidence 997 7999988766442 357777775555555555433222211 1111 101
Q ss_pred CCChhhhhcc-CCCEEEEecCCCCCcchHHHHHHHHhCC-------CCCcEEecCccchh-h-----ccCCCceeeeEE-
Q 008169 312 VHSPKLLMNW-QEPCIVFSPHWSLRLGPTIHLLRRWSGD-------HNSLLVLENEVDAE-L-----AVLPFKPISMKV- 376 (575)
Q Consensus 312 i~~~~~~~~~-~~P~VV~as~gml~~G~s~~~l~~~~~d-------~~N~Iil~g~~~~~-~-----~l~~~~~v~~~v- 376 (575)
...... ..--+|+++...-+ +..-+.+.|.+. +...+||...--++ + .+......-+++
T Consensus 286 ----~~~~~~~~~~~lii~TG~qge--p~aaL~r~a~~~h~~~~i~~gD~vIfss~~ipgne~~~~~~~n~l~~~g~~i~ 359 (555)
T COG0595 286 ----REVKRYPDEEVLIICTGSQGE--PMAALSRMANGEHRYVKIKEGDTVIFSSSPIPGNEAAVYRLLNRLYKAGAKVI 359 (555)
T ss_pred ----HHhccccccceEEEEeCCCCC--chhhhhHhhcCCccceecCCCCeEEEeccCcCCcHHHHHHHHHHHHhcCcEEe
Confidence 111111 11235555533222 222222333221 23345553211111 0 001111122222
Q ss_pred ----EEeecccCCChhhHHHHHhhcCCCEEEEecCCcccccccc----cCCc---eeeecCCCcEEEeCCCC
Q 008169 377 ----LQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSD----VTSF---SVSHYSENETIHIPSLK 437 (575)
Q Consensus 377 ----~~~~fsaHaD~~~l~~~i~~~~P~~vilvHGe~~~~~~l~----~~~~---~v~~p~~~e~i~l~~~~ 437 (575)
..+--|+|+..+++..+++.++|+.++-|||+.......+ +.|+ .++.+++|+.+.+....
T Consensus 360 ~~~~~~~hvSGHas~eel~~mi~~l~Pky~iPvHGeyr~~~~~a~la~~~G~~~~~i~i~~nG~v~~l~~~~ 431 (555)
T COG0595 360 TGGDKKVHVSGHASREELKLMINLLRPKYLIPVHGEYRMLVAHAKLAEEEGIPQENIFILRNGDVLELEGGK 431 (555)
T ss_pred ecccceeEecCCCChHHHHHHHHhhCCceecccCCCcHHHHHHHHHHHhcCCCcccEEEecCceEEEecCCc
Confidence 2345799999999999999999999999999976654443 2332 58999999999997543
No 12
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=99.12 E-value=3.4e-11 Score=87.14 Aligned_cols=42 Identities=17% Similarity=0.293 Sum_probs=36.5
Q ss_pred CceeeeEEEEeecccCCChhhHHHHHhhcCCCEEEEecCCcc
Q 008169 369 FKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRT 410 (575)
Q Consensus 369 ~~~v~~~v~~~~fsaHaD~~~l~~~i~~~~P~~vilvHGe~~ 410 (575)
.++++|+|..++||||||+++|.+|++.++|++||+||||++
T Consensus 2 ~i~v~a~v~~~~fSgHad~~~L~~~i~~~~p~~vilVHGe~~ 43 (43)
T PF07521_consen 2 MIPVRARVEQIDFSGHADREELLEFIEQLNPRKVILVHGEPR 43 (43)
T ss_dssp EEE--SEEEESGCSSS-BHHHHHHHHHHHCSSEEEEESSEHH
T ss_pred EEEeEEEEEEEeecCCCCHHHHHHHHHhcCCCEEEEecCCCC
Confidence 357899999999999999999999999999999999999863
No 13
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=98.16 E-value=8.1e-05 Score=80.10 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=54.8
Q ss_pred HhcceEecCCCEEEeCCceEEEeecCCccccceEEEEEeC-CeeEEEecCCCCCCCCCCCCCCCCCCCCcEEEEc
Q 008169 96 ISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGA-KGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 169 (575)
Q Consensus 96 ~~~i~~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~-~~~I~YtgD~s~~~~~~~~~d~~~l~~~DvLI~e 169 (575)
++.++.++-+|++.+.+ +.+|.++|-|+.||+|+.-+.. +..++|||||..........-...-...|.|.++
T Consensus 156 ~~~i~~l~l~~~~~i~~-~~vt~ldAnHCPGa~mf~F~~~~~~~~lhtGDFR~s~~m~~~p~~~~~~~i~~lyLD 229 (481)
T KOG1361|consen 156 KQSIQALDLNQPLEIPG-IQVTLLDANHCPGAVMFLFELSFGPCILHTGDFRASADMSKEPALTLEQTIDILYLD 229 (481)
T ss_pred hhhceeecCCCceeecc-eEEEEeccccCCCceEEEeecCCCceEEecCCcccChhhhhChHHhcCCccceEEEe
Confidence 47788999999999986 9999999999999999999875 4699999999864211111000011356888887
No 14
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=97.24 E-value=0.00055 Score=68.39 Aligned_cols=65 Identities=9% Similarity=0.060 Sum_probs=48.6
Q ss_pred ecCCCEEEeCCceEEEeecCCccccceEEEEEeCCeeEEEecCCCCCCCCCCCCCCCCCCCCcEEEEc
Q 008169 102 LRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 169 (575)
Q Consensus 102 v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s~~~~~~~~~d~~~l~~~DvLI~e 169 (575)
+..++++.+. +++|+++++.|..++..|.|+.++++++|+||......... +.-.-.++|+||+|
T Consensus 111 ~~~~~~~~~~-~~~i~~~~~~H~~~~~g~~i~~~~~~i~y~gDt~~~~~~~~--~~~~~~~~D~li~e 175 (238)
T TIGR03307 111 LEAFEPFDLG-GLRVTPLPLVHSKLTFGYLLETDGQRVAYLTDTAGLPPDTE--AFLKNHPLDVLILD 175 (238)
T ss_pred ccCCceEEEC-CEEEEEEecCCCCcceEEEEecCCcEEEEEecCCCCCHHHH--HHHhcCCCCEEEEe
Confidence 5567888885 59999999999999999999999999999999642211000 00001269999999
No 15
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=96.30 E-value=0.0074 Score=57.55 Aligned_cols=63 Identities=17% Similarity=0.348 Sum_probs=52.0
Q ss_pred cceEecCCCEEEeCCceEEEeecCCccccceE----EEEEeCCeeEEEecCCCCCCCCCCCCCCCCCCCCcEEEEc
Q 008169 98 KVQTLRFGEEACYNGILIIKAFSSGLDIGACN----WIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 169 (575)
Q Consensus 98 ~i~~v~y~q~~~l~g~i~it~~~AGHiLGsa~----~~I~~~~~~I~YtgD~s~~~~~~~~~d~~~l~~~DvLI~e 169 (575)
.+..+.-++.+++. +++|+++++.|..+++. |.|+.++.+|+|+||... +...++++|++|++
T Consensus 88 ~~~~~~~~~~~~~~-~~~i~~~~~~H~~~~~~~~~g~~i~~~~~~i~~~gD~~~--------~~~~~~~~D~li~~ 154 (194)
T PF12706_consen 88 DIIEISPGDEFEIG-DFRITPFPANHGPPSYGGNKGFVIEPDGKKIFYSGDTNY--------DFEELKNIDLLILE 154 (194)
T ss_dssp EEEEECTTEEEEET-TEEEEEEEEESSSCCEEECCEEEEEETTEEEEEETSSSS--------CHHHHTTBSEEEEE
T ss_pred eEEEeccCceEEec-eEEEEEEeccccccccccCceEEEecCCcceEEeeccch--------hhhhhccCCEEEEe
Confidence 34556666788886 59999999999999999 999999999999999765 12234789999999
No 16
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=95.47 E-value=0.075 Score=46.53 Aligned_cols=82 Identities=11% Similarity=0.221 Sum_probs=56.2
Q ss_pred CCCEEEEecCCCCCcchHHHHHHHHhCCCCCcEEe--cCc-cchh--hccC---C--CceeeeEEEEeecccCCChhhHH
Q 008169 322 QEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVL--ENE-VDAE--LAVL---P--FKPISMKVLQCSFLSGKKLQKVQ 391 (575)
Q Consensus 322 ~~P~VV~as~gml~~G~s~~~l~~~~~d~~N~Iil--~g~-~~~~--~~l~---~--~~~v~~~v~~~~fsaHaD~~~l~ 391 (575)
..-.|=+++-+.++......+++...+...+.|.| ||. +... .... + ...-+..+..+|+|-|+.+.+|.
T Consensus 12 ~~t~iHvv~~~~~~~~~l~~~~~~~~~~~~~vi~i~PTgW~~~~~~~~~~~~~~~~~~~~~~~~~~~VPYSeHSSf~EL~ 91 (110)
T PF07522_consen 12 SETRIHVVPMGQLSKETLEKYLKSLKPRFDPVIGIRPTGWSFSNKKKKSSVSISPSLQSRGNVRIYRVPYSEHSSFSELK 91 (110)
T ss_pred CCCeEEEEECCcCCHHHHHHHHHhhcccCCCeEEEEeCccccccCCCccccccccccccCCCceEEEEecccCCCHHHHH
Confidence 44567777777777666667777777667776665 442 1111 1111 1 12335678889999999999999
Q ss_pred HHHhhcCCCEEE
Q 008169 392 PLLKILQPKLVL 403 (575)
Q Consensus 392 ~~i~~~~P~~vi 403 (575)
+|++.++|++|+
T Consensus 92 ~Fv~~l~P~~Ii 103 (110)
T PF07522_consen 92 EFVSFLKPKKII 103 (110)
T ss_pred HHHHhcCCcEEE
Confidence 999999999986
No 17
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=95.29 E-value=0.036 Score=55.70 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=47.9
Q ss_pred ecCCCEEEeCCceEEEeecCCccccceEEEEEeCCeeEEEecCCCCCCCCCCCCCCCCCCCCcEEEEc
Q 008169 102 LRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 169 (575)
Q Consensus 102 v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s~~~~~~~~~d~~~l~~~DvLI~e 169 (575)
++-++++.+. +++|+++++.|..++..+.|+.++++|+|+||........ .+.-.-.++|+||.|
T Consensus 121 l~~~~~~~~~-~~~I~~~~~~H~~~s~g~~i~~~~~~i~ysgDt~~~~~~~--~~~~~~~~~Dlli~e 185 (250)
T PRK11244 121 LEPFEPFDLG-GLQVTPLPLNHSKLTFGYLLETAHSRVAYLTDTVGLPEDT--LKFLRNNQPDLLVLD 185 (250)
T ss_pred cCCCCCeeEC-CEEEEEEeeCCCcceeEEEEecCCeEEEEEcCCCCCCHHH--HHHHhcCCCCEEEEe
Confidence 4446788886 5999999999999999999999999999999954221000 000001478999999
No 18
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=94.96 E-value=0.028 Score=52.60 Aligned_cols=47 Identities=26% Similarity=0.372 Sum_probs=35.3
Q ss_pred cceEecCCCEEEeCCceEEEeec-CCccccceEEEEEeCCeeEEEecCCCC
Q 008169 98 KVQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGAKGNIAYISGSNF 147 (575)
Q Consensus 98 ~i~~v~y~q~~~l~g~i~it~~~-AGHiLGsa~~~I~~~~~~I~YtgD~s~ 147 (575)
.+..+..++++.+.+ .++++++ .||..|++.+.++ +.+++|+||...
T Consensus 98 ~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~~~~~~~~--~~~vl~~gD~~~ 145 (183)
T smart00849 98 PDRTLKDGEELDLGG-LELEVIHTPGHTPGSIVLYLP--EGKILFTGDLLF 145 (183)
T ss_pred cceecCCCCEEEeCC-ceEEEEECCCCCCCcEEEEEC--CCCEEEECCeee
Confidence 456778889999863 4555444 4999999987775 489999999654
No 19
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=94.92 E-value=0.07 Score=55.40 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=47.2
Q ss_pred eEecCCCEEEeCC----ceEEEeecCC--------c------cccceEEEEEeC--CeeEEEecCCCCCCCCCCCCCCCC
Q 008169 100 QTLRFGEEACYNG----ILIIKAFSSG--------L------DIGACNWIISGA--KGNIAYISGSNFASGHAMDFDYRA 159 (575)
Q Consensus 100 ~~v~y~q~~~l~g----~i~it~~~AG--------H------iLGsa~~~I~~~--~~~I~YtgD~s~~~~~~~~~d~~~ 159 (575)
+.+.-++++.+.+ +++|++++.= | -..+..+.|+.+ +++++|++|....+ +.-...
T Consensus 134 ~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~~~g~~~~y~tD~g~~~----~~~~~~ 209 (302)
T TIGR02108 134 QPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDGTTGKRLFYIPGCAEIT----DDLKAR 209 (302)
T ss_pred eEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEeCCCCcEEEEECCCCCCC----HHHHHH
Confidence 3455567776642 5999999987 4 246789999988 89999999964211 111124
Q ss_pred CCCCcEEEEcC
Q 008169 160 IQGSDLILYSD 170 (575)
Q Consensus 160 l~~~DvLI~e~ 170 (575)
++++|+||+|+
T Consensus 210 l~~~d~liida 220 (302)
T TIGR02108 210 MAGADLVFFDG 220 (302)
T ss_pred HhCCCEEEEeC
Confidence 77899999993
No 20
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=94.61 E-value=0.092 Score=54.11 Aligned_cols=34 Identities=12% Similarity=0.054 Sum_probs=25.4
Q ss_pred EecCCC-EEEeCCceEEEeecCCccccceEEEEEeC
Q 008169 101 TLRFGE-EACYNGILIIKAFSSGLDIGACNWIISGA 135 (575)
Q Consensus 101 ~v~y~q-~~~l~g~i~it~~~AGHiLGsa~~~I~~~ 135 (575)
.+.-++ .+.. ++++|++++.=|...+..+.|+.+
T Consensus 115 ~~~~~~~~~~~-~~~~v~~~~~~H~~~~~gy~i~~~ 149 (299)
T TIGR02651 115 EIEEGGLVFED-DGFKVEAFPLDHSIPSLGYRFEEK 149 (299)
T ss_pred EccCCCceEec-CCEEEEEEEcCCCCceEEEEEEEC
Confidence 344444 4555 469999999999888889998854
No 21
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=94.00 E-value=0.12 Score=53.70 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=47.4
Q ss_pred eEecCCCEEEeCCceEEEeecCCccccceEEEEEe---------------------------------------------
Q 008169 100 QTLRFGEEACYNGILIIKAFSSGLDIGACNWIISG--------------------------------------------- 134 (575)
Q Consensus 100 ~~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~--------------------------------------------- 134 (575)
..+.-++.+.. ++++|++++.-|-.-+..+.|+.
T Consensus 117 ~~i~~~~~~~~-~~~~v~~~~~~H~~~~~gy~i~~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~ 195 (303)
T TIGR02649 117 VEIGAGEILDD-GLRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADY 195 (303)
T ss_pred EEcCCCceEec-CCeEEEEEEccCccceEEEEEeccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHe
Confidence 34444566665 45999999999988888898875
Q ss_pred -----CCeeEEEecCCCCCCCCCCCCCCCCCCCCcEEEEcCCCCC
Q 008169 135 -----AKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSL 174 (575)
Q Consensus 135 -----~~~~I~YtgD~s~~~~~~~~~d~~~l~~~DvLI~e~~st~ 174 (575)
.+.+|+|+||.... +.-.....++|+||+| +++
T Consensus 196 ~~~~~~g~~i~y~gDt~~~-----~~~~~~~~~adlLi~E--at~ 233 (303)
T TIGR02649 196 LAAPVPGKALAIFGDTGPC-----DAALDLAKGVDVMVHE--ATL 233 (303)
T ss_pred eCCCCCCcEEEEecCCCCh-----HHHHHHhcCCCEEEEe--ccC
Confidence 35789999995421 1111245799999999 454
No 22
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=90.68 E-value=0.56 Score=51.97 Aligned_cols=47 Identities=2% Similarity=-0.128 Sum_probs=37.8
Q ss_pred ceEecCCCEEEeCCceEEEeecC--CccccceEEEEEeCCeeEEEecCCCC
Q 008169 99 VQTLRFGEEACYNGILIIKAFSS--GLDIGACNWIISGAKGNIAYISGSNF 147 (575)
Q Consensus 99 i~~v~y~q~~~l~g~i~it~~~A--GHiLGsa~~~I~~~~~~I~YtgD~s~ 147 (575)
++.++.++++.+.++.+++++.+ +|..|+.++.++ +.+|+||||.-+
T Consensus 121 ~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~~--~~~vLFsgD~fG 169 (479)
T PRK05452 121 FNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLT--GDAVLFSNDAFG 169 (479)
T ss_pred EEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEEc--CCCEEEeccccc
Confidence 46789999999975567777777 599999998875 679999999543
No 23
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=89.46 E-value=0.76 Score=49.54 Aligned_cols=45 Identities=7% Similarity=-0.068 Sum_probs=35.2
Q ss_pred ceEecCCCEEEeCCceEEEeecC--CccccceEEEEEeCCeeEEEecCCC
Q 008169 99 VQTLRFGEEACYNGILIIKAFSS--GLDIGACNWIISGAKGNIAYISGSN 146 (575)
Q Consensus 99 i~~v~y~q~~~l~g~i~it~~~A--GHiLGsa~~~I~~~~~~I~YtgD~s 146 (575)
++.++.++++++. +.+++++.+ +|..|++.+.++ +.+|+||||.-
T Consensus 118 ~~~v~~g~~l~lG-~~~l~~i~tP~~H~p~~~~~y~~--~~~vLFsgD~f 164 (394)
T PRK11921 118 FVVVKTGDRLEIG-SNELIFIEAPMLHWPDSMFTYLT--GDNILFSNDAF 164 (394)
T ss_pred eEEeCCCCEEeeC-CeEEEEEeCCCCCCCCceEEEEc--CCCEEEecCcc
Confidence 3567888999995 578888744 499999988874 57899999943
No 24
>PRK00685 metal-dependent hydrolase; Provisional
Probab=89.27 E-value=0.68 Score=45.50 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=48.4
Q ss_pred cceEecCCCEEEeCCceEEEeecCCcccc------------ceEEEEEeCCeeEEEecCCCCCCCCCCCCCCCCCCCCcE
Q 008169 98 KVQTLRFGEEACYNGILIIKAFSSGLDIG------------ACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDL 165 (575)
Q Consensus 98 ~i~~v~y~q~~~l~g~i~it~~~AGHiLG------------sa~~~I~~~~~~I~YtgD~s~~~~~~~~~d~~~l~~~Dv 165 (575)
++..++.++++++. +++|+++++-|... ...|.|+.++.+|+|+||........ ......++|+
T Consensus 85 ~~~~~~~~~~~~~~-~~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~~~~~~i~~~GDt~~~~~~~---~~~~~~~~D~ 160 (228)
T PRK00685 85 KTHPMNIGGTVEFD-GGKVKLTPALHSSSFIDEDGITYLGNPTGFVITFEGKTIYHAGDTGLFSDMK---LIGELHKPDV 160 (228)
T ss_pred ceeeccCCCcEEEC-CEEEEEEEEEcCCCCcCCCCcccCCCceEEEEEECCeEEEEecCccchhHHH---HHHHhhCCCE
Confidence 56778888999986 59999999988654 47899999999999999954321000 0011235788
Q ss_pred EEEc
Q 008169 166 ILYS 169 (575)
Q Consensus 166 LI~e 169 (575)
+++.
T Consensus 161 ~~~~ 164 (228)
T PRK00685 161 ALLP 164 (228)
T ss_pred EEEe
Confidence 8875
No 25
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=87.82 E-value=4.6 Score=41.29 Aligned_cols=67 Identities=10% Similarity=-0.005 Sum_probs=46.3
Q ss_pred eEecCCCEEEeCC---ceEEEeecCCccc------cceEEEEEe-----------------------------CCeeEEE
Q 008169 100 QTLRFGEEACYNG---ILIIKAFSSGLDI------GACNWIISG-----------------------------AKGNIAY 141 (575)
Q Consensus 100 ~~v~y~q~~~l~g---~i~it~~~AGHiL------Gsa~~~I~~-----------------------------~~~~I~Y 141 (575)
.++.-++.+.+.. ...++++...|.. |-..|.... ...+|+|
T Consensus 107 ~~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~~r~KLK~E~~~l~~~eI~~l~~~gg~~~t~e~~~~~vvy 186 (277)
T TIGR02650 107 HLEEEDERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEERRKKKEEEFGGDDKKEARLLKEEGGDDFTREEHHKILLI 186 (277)
T ss_pred CCCCCCcEEEeecCCccEEEecCccccccCccCccCeEEEEEeecchHhHcCCCHHHHHHHHHhCCccccccccCcEEEE
Confidence 4556677777763 4899999999986 666664421 1369999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCC
Q 008169 142 ISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLD 175 (575)
Q Consensus 142 tgD~s~~~~~~~~~d~~~l~~~DvLI~e~~st~~ 175 (575)
+||.... +.....+||+||.| +|+.
T Consensus 187 sGDT~~~-------~~~~a~~adlLIhE--aTf~ 211 (277)
T TIGR02650 187 IGDDLAA-------DDEEEEGGEELIHE--CCFF 211 (277)
T ss_pred eCCCCCC-------ChHHhcCCCEEEEe--cccc
Confidence 9996432 22345689999999 5653
No 26
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=86.69 E-value=1.5 Score=46.64 Aligned_cols=69 Identities=20% Similarity=0.153 Sum_probs=48.6
Q ss_pred hcceEecCCCEEEeCCceEEEeecCC-----------ccc-----------cceEEEEEeCCeeEEEecCCCCCCCCCCC
Q 008169 97 SKVQTLRFGEEACYNGILIIKAFSSG-----------LDI-----------GACNWIISGAKGNIAYISGSNFASGHAMD 154 (575)
Q Consensus 97 ~~i~~v~y~q~~~l~g~i~it~~~AG-----------HiL-----------Gsa~~~I~~~~~~I~YtgD~s~~~~~~~~ 154 (575)
++++.++.++++.+. +++|++.+|- |.. .++.|.|+.++.+|.|+||.........
T Consensus 159 ~rv~~v~~Ge~i~ig-~v~It~lpa~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~tvy~sGDT~~~~~~~~- 236 (355)
T PRK11709 159 ERCIVVKPGDVVKVK-DIKIHALDSFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGGNIYHSGDSHYSNYFAK- 236 (355)
T ss_pred ceEEEecCCCcEEEC-CEEEEEEeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEeCCCCccHHHHH-
Confidence 468899999999996 5999999983 332 2478999999999999999653211000
Q ss_pred CCCCCCCCCcEEEEc
Q 008169 155 FDYRAIQGSDLILYS 169 (575)
Q Consensus 155 ~d~~~l~~~DvLI~e 169 (575)
...-.++|++++.
T Consensus 237 --i~~~~~iDvall~ 249 (355)
T PRK11709 237 --HGNDHQIDVALGS 249 (355)
T ss_pred --HHhcCCCCEEEec
Confidence 0011257998885
No 27
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=86.61 E-value=0.82 Score=42.57 Aligned_cols=70 Identities=14% Similarity=0.153 Sum_probs=48.3
Q ss_pred HhcceEecCCCEEEeCCceEEEeecCCcc-------ccceEEEEEeCCeeEEEecCCCCCCCCCCCCCCCCCCCCcEEEE
Q 008169 96 ISKVQTLRFGEEACYNGILIIKAFSSGLD-------IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 168 (575)
Q Consensus 96 ~~~i~~v~y~q~~~l~g~i~it~~~AGHi-------LGsa~~~I~~~~~~I~YtgD~s~~~~~~~~~d~~~l~~~DvLI~ 168 (575)
..+++.+.-++.+++. +++++..++-|. -+.+.|.|+.++.+|++.||..... .......+.++|++++
T Consensus 59 ~~~~~vv~~~~~~~~~-~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~~~Gd~~~~~---~~~~~~~~~~vDvl~~ 134 (163)
T PF13483_consen 59 DRDIHVVAPGGEYRFG-GFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIYHAGDTGFPP---DDEQLKQLGKVDVLFL 134 (163)
T ss_dssp HTSSEEE-TTEEEECT-TEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEEE-TT--S------HHHHHHH-S-SEEEE
T ss_pred ccccEEEccceEEEEe-eeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEEEECCCccCC---CHHHHhcccCCCEEEe
Confidence 6788999999999986 699999999874 4478999999999999999964310 0111123458899998
Q ss_pred c
Q 008169 169 S 169 (575)
Q Consensus 169 e 169 (575)
-
T Consensus 135 p 135 (163)
T PF13483_consen 135 P 135 (163)
T ss_dssp E
T ss_pred c
Confidence 6
No 28
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=86.32 E-value=1.2 Score=46.28 Aligned_cols=66 Identities=15% Similarity=0.144 Sum_probs=45.7
Q ss_pred eEecCCCEEEeC--CceEEEeecCCc-------------cccceEEEEE--eCCeeEEEecCCCCCCCCCCCCCCCCCCC
Q 008169 100 QTLRFGEEACYN--GILIIKAFSSGL-------------DIGACNWIIS--GAKGNIAYISGSNFASGHAMDFDYRAIQG 162 (575)
Q Consensus 100 ~~v~y~q~~~l~--g~i~it~~~AGH-------------iLGsa~~~I~--~~~~~I~YtgD~s~~~~~~~~~d~~~l~~ 162 (575)
+.+.-++++++. ++++|++++.-| -..+..++|+ .++++++|++|..... +.-...+++
T Consensus 137 ~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g~~~~y~tD~~~~~----~~~~~~~~g 212 (302)
T PRK05184 137 RPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATGKRLFYAPGLAEVT----DALRARLAG 212 (302)
T ss_pred EEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCCcEEEEECCCCCCC----HHHHHHHhc
Confidence 344445677775 369999999864 3567889995 6788999998864321 001124678
Q ss_pred CcEEEEc
Q 008169 163 SDLILYS 169 (575)
Q Consensus 163 ~DvLI~e 169 (575)
+|+||+|
T Consensus 213 aDlli~d 219 (302)
T PRK05184 213 ADCVLFD 219 (302)
T ss_pred CCEEEEe
Confidence 9999999
No 29
>PRK02113 putative hydrolase; Provisional
Probab=84.57 E-value=1.3 Score=44.44 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=45.1
Q ss_pred cceEecCCCEEEeCCceEEEeecCCcc-ccceEEEEEeCCeeEEEecCCCCCCCCCCCCCCCCCCCCcEEEEcC
Q 008169 98 KVQTLRFGEEACYNGILIIKAFSSGLD-IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSD 170 (575)
Q Consensus 98 ~i~~v~y~q~~~l~g~i~it~~~AGHi-LGsa~~~I~~~~~~I~YtgD~s~~~~~~~~~d~~~l~~~DvLI~e~ 170 (575)
+++.++.++++++. +++|++++.-|. .-+..|.+ .+++|+||...... .-...++++|+||+|.
T Consensus 127 ~~~~~~~g~~~~~~-~~~i~~~~~~H~~~~~~gy~i----~~i~y~~Dt~~~~~----~~~~~~~~~DlLi~e~ 191 (252)
T PRK02113 127 PLREIEPDRPFLVN-HTEVTPLRVMHGKLPILGYRI----GKMAYITDMLTMPE----EEYEQLQGIDVLVMNA 191 (252)
T ss_pred eeEEcCCCCCEEEC-CeEEEEEEecCCCccEEEEEe----CCEEEccCCCCCCH----HHHHHhcCCCEEEEhh
Confidence 35667778889986 599999999995 33556777 58999999642111 0112357899999994
No 30
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=73.36 E-value=9.7 Score=38.24 Aligned_cols=45 Identities=11% Similarity=0.295 Sum_probs=34.3
Q ss_pred eEecCCCEEEeCCceEEEeec-CCccccceEEEEEeCCeeEEEecCCCC
Q 008169 100 QTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGAKGNIAYISGSNF 147 (575)
Q Consensus 100 ~~v~y~q~~~l~g~i~it~~~-AGHiLGsa~~~I~~~~~~I~YtgD~s~ 147 (575)
+.+.-++++.+. +.+++++. .||..|+..+.+. ..+++|+||...
T Consensus 84 ~~v~~g~~~~~g-~~~i~v~~tpGHT~g~i~~~~~--~~~~lftGDtl~ 129 (248)
T TIGR03413 84 HPVKDGDTVTLG-GLEFEVLAVPGHTLGHIAYYLP--DSPALFCGDTLF 129 (248)
T ss_pred EEeCCCCEEEEC-CEEEEEEECCCCCcccEEEEEC--CCCEEEEcCccc
Confidence 467778888885 46666554 5899999888775 468999999653
No 31
>PRK03094 hypothetical protein; Provisional
Probab=68.02 E-value=13 Score=30.51 Aligned_cols=69 Identities=20% Similarity=0.136 Sum_probs=40.5
Q ss_pred CChHHHHHHHHHCCCceEEeeccccCcCCCceEEEEeCCCCcEEEEcCceeeEecCCHHHHHHHHHHHH
Q 008169 501 PDPENLLAELSKMGINGSVERCMTDAESEDGFTVKVQDPEKSMIEVRAAVTVISAADKNLASRIVKAME 569 (575)
Q Consensus 501 ~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~t~I~~~~~~~R~~l~~~~~ 569 (575)
-.|+++++.|+++|++++-.....+...|+-+||.=++.+=.-|+-....+-|++..=+..+.+++.|.
T Consensus 8 ~~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mgi~d~~t~~pVI~A~G~TaeEI~~~ve 76 (80)
T PRK03094 8 QSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVITASGLTADEICQQVE 76 (80)
T ss_pred cCcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceecccccccCCcEEEcCCCCHHHHHHHHH
Confidence 358899999999999998655433344566666655432222233333334455555455555555554
No 32
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=67.66 E-value=23 Score=32.41 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=29.7
Q ss_pred cCCCEEEeCCceEEEeecCCccccceEEEEEeCCeeEEEecCCCCC
Q 008169 103 RFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFA 148 (575)
Q Consensus 103 ~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s~~ 148 (575)
...+.....+ ........+|.-|++.+.+..++++++|+||....
T Consensus 105 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vlftGD~~~~ 149 (194)
T PF00753_consen 105 EDEDDLEIGG-DRILFIIPGPGHGSDSLIIYLPGGKVLFTGDLLFS 149 (194)
T ss_dssp ETTTEEEEET-TEEEEEEESSSSSTTEEEEEETTTTEEEEETTSCT
T ss_pred eecccccccc-cccccceeccccCCcceEEEeCCCcEEEeeeEecc
Confidence 3344444433 34455556666677777777799999999997654
No 33
>PRK04286 hypothetical protein; Provisional
Probab=67.54 E-value=16 Score=37.90 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=41.7
Q ss_pred eEecCCCEEEeCCceEEEee-cCCcc-----ccc-eEEEEEeCCeeEEEecCCCC-CCCCCCCCCCCCC--CCCcEEEEc
Q 008169 100 QTLRFGEEACYNGILIIKAF-SSGLD-----IGA-CNWIISGAKGNIAYISGSNF-ASGHAMDFDYRAI--QGSDLILYS 169 (575)
Q Consensus 100 ~~v~y~q~~~l~g~i~it~~-~AGHi-----LGs-a~~~I~~~~~~I~YtgD~s~-~~~~~~~~d~~~l--~~~DvLI~e 169 (575)
..+.-++.+.+. +++|++. +..|- .|- ..+.|+.++.+++|+||... ...... ..+ .++|+||++
T Consensus 135 ~~~~~g~~~~ig-~~~V~~~~~v~H~~~~~~~Gy~i~~ri~~gg~~~~~~gDt~~~~~~~~~----~~l~~~d~dlLi~~ 209 (298)
T PRK04286 135 IEYADGKTFRFG-GTTIEFSPPVPHGADGSKLGYVIMVRISDGDESFVFASDVQGPLNDEAV----EFILEKKPDVVIIG 209 (298)
T ss_pred eEECCCCEEEEC-CEEEEEeccCCCCCCCCccceEEEEEEEeCCEEEEEECCCCCCCCHHHH----HHHhcCCCCEEEeC
Confidence 344557788885 5899966 66773 332 23466788999999999762 111000 112 288999998
Q ss_pred C
Q 008169 170 D 170 (575)
Q Consensus 170 ~ 170 (575)
.
T Consensus 210 ~ 210 (298)
T PRK04286 210 G 210 (298)
T ss_pred C
Confidence 3
No 34
>PLN02469 hydroxyacylglutathione hydrolase
Probab=66.21 E-value=12 Score=37.80 Aligned_cols=47 Identities=11% Similarity=0.211 Sum_probs=33.5
Q ss_pred eEecCCCEEEeCCceEEEee-cCCccccceEEEEEeC--CeeEEEecCCC
Q 008169 100 QTLRFGEEACYNGILIIKAF-SSGLDIGACNWIISGA--KGNIAYISGSN 146 (575)
Q Consensus 100 ~~v~y~q~~~l~g~i~it~~-~AGHiLGsa~~~I~~~--~~~I~YtgD~s 146 (575)
+.+.-++.+.+.+.+.++.+ --||..|+..+.+... ..+++||||..
T Consensus 88 ~~v~~gd~i~lg~~~~~~vi~tPGHT~ghi~~~~~~~~~~~~~lFtGDtL 137 (258)
T PLN02469 88 HPVENGDKLSLGKDVNILALHTPCHTKGHISYYVTGKEGEDPAVFTGDTL 137 (258)
T ss_pred eEeCCCCEEEECCceEEEEEECCCCCCCCEEEEeccCCCCCCEEEecCcc
Confidence 45777888888643444433 2599999999988642 35799999954
No 35
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=64.19 E-value=11 Score=36.50 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=34.7
Q ss_pred eEecCCCEEEeCC-ceEEEeecCCccccceEEEEEeCCeeEEEecCCCC
Q 008169 100 QTLRFGEEACYNG-ILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNF 147 (575)
Q Consensus 100 ~~v~y~q~~~l~g-~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s~ 147 (575)
..+.-++.+.+.+ .+++.+.+ ||..|+..+.++.++ ++|+||...
T Consensus 125 ~~~~~~~~~~~~~~~~~~i~tp-GHT~g~~~~~~~~~~--~l~~gD~~~ 170 (252)
T COG0491 125 RALEDGDELDLGGLELEVLHTP-GHTPGHIVFLLEDGG--VLFTGDTLF 170 (252)
T ss_pred eecCCCCEEEecCeEEEEEECC-CCCCCeEEEEECCcc--EEEecceec
Confidence 3444566777753 48888888 999999999998655 999999553
No 36
>PRK00055 ribonuclease Z; Reviewed
Probab=63.90 E-value=4.2 Score=40.82 Aligned_cols=42 Identities=14% Similarity=0.126 Sum_probs=29.4
Q ss_pred cceEEEEEeCCeeEEEecCCCCCCCCCCCCCCCCCCCCcEEEEcCCCCC
Q 008169 126 GACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSL 174 (575)
Q Consensus 126 Gsa~~~I~~~~~~I~YtgD~s~~~~~~~~~d~~~l~~~DvLI~e~~st~ 174 (575)
++..+.++.++.+++|+||...... -...+.++|+||+| +++
T Consensus 156 ~~~~~~~~~~g~~~~y~~Dt~~~~~-----~~~~~~~~d~li~E--~~~ 197 (270)
T PRK00055 156 PADVLGPPRKGRKVAYCGDTRPCEA-----LVELAKGADLLVHE--ATF 197 (270)
T ss_pred HHHeeccCCCCcEEEEeCCCCCcHH-----HHHHhCCCCEEEEe--ccC
Confidence 5667788888999999999653210 01235689999999 454
No 37
>PRK00685 metal-dependent hydrolase; Provisional
Probab=61.13 E-value=12 Score=36.50 Aligned_cols=52 Identities=12% Similarity=0.004 Sum_probs=36.9
Q ss_pred ccCCChhhHHHHHhhcCCCEEEEecCCccc-----ccccc----cCCceeeecCCCcEEEe
Q 008169 382 LSGKKLQKVQPLLKILQPKLVLFPEEWRTH-----VSFSD----VTSFSVSHYSENETIHI 433 (575)
Q Consensus 382 saHaD~~~l~~~i~~~~P~~vilvHGe~~~-----~~~l~----~~~~~v~~p~~~e~i~l 433 (575)
..|.+.++..++++.++|+++|++|-..-. .+.++ +.+.++..++.|+++++
T Consensus 168 ~~h~~~~ea~~~~~~~~~k~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 228 (228)
T PRK00685 168 NFTMGPEDAALAVELIKPKIVIPMHYNTFPLIEQDPEKFKALVEGLGTKVVILKPGESIEL 228 (228)
T ss_pred ccccCHHHHHHHHHhhCCCEEEEeccCCCcCCcCCHHHHHHHHHhcCCcEEECCCCCEeeC
Confidence 358999999999999999999999975311 12222 23446677777777654
No 38
>PRK02126 ribonuclease Z; Provisional
Probab=58.67 E-value=29 Score=36.56 Aligned_cols=22 Identities=9% Similarity=0.039 Sum_probs=19.3
Q ss_pred CceEEEeecCCccccceEEEEE
Q 008169 112 GILIIKAFSSGLDIGACNWIIS 133 (575)
Q Consensus 112 g~i~it~~~AGHiLGsa~~~I~ 133 (575)
++++|++++.=|-.-+..|.|+
T Consensus 151 ~~~~V~a~~~~H~vp~~gy~~~ 172 (334)
T PRK02126 151 PWFRVRAAFLDHGIPCLAFALE 172 (334)
T ss_pred CCEEEEEEEccCCCceeEEEEE
Confidence 5699999999998888888887
No 39
>PLN02398 hydroxyacylglutathione hydrolase
Probab=57.02 E-value=33 Score=36.12 Aligned_cols=45 Identities=13% Similarity=0.277 Sum_probs=33.0
Q ss_pred eEecCCCEEEeCCceEEEeec-CCccccceEEEEEeCCeeEEEecCCCC
Q 008169 100 QTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGAKGNIAYISGSNF 147 (575)
Q Consensus 100 ~~v~y~q~~~l~g~i~it~~~-AGHiLGsa~~~I~~~~~~I~YtgD~s~ 147 (575)
..+.-++++.+.+ .+++.+. -||..|...+.+. +.+++|+||..+
T Consensus 164 ~~v~dGd~i~lgg-~~l~vi~tPGHT~GhI~~~~~--~~~vLFtGDtLf 209 (329)
T PLN02398 164 IVLKDGDKWMFAG-HEVLVMETPGHTRGHISFYFP--GSGAIFTGDTLF 209 (329)
T ss_pred EEeCCCCEEEECC-eEEEEEeCCCcCCCCEEEEEC--CCCEEEECCCcC
Confidence 4567788888864 5665543 4999999988764 457999999654
No 40
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=54.72 E-value=2.4 Score=43.85 Aligned_cols=56 Identities=14% Similarity=0.152 Sum_probs=35.8
Q ss_pred CceEEEeecCCcc----ccceEEEEEe--CCeeEEEecCCCCCCCCCCCCCCCCCCCCcEEEEcCCCCC
Q 008169 112 GILIIKAFSSGLD----IGACNWIISG--AKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSL 174 (575)
Q Consensus 112 g~i~it~~~AGHi----LGsa~~~I~~--~~~~I~YtgD~s~~~~~~~~~d~~~l~~~DvLI~e~~st~ 174 (575)
++..+++..+||. .-.-.+.+.. .+.+|+|+||...... -....++||+||.| +|+
T Consensus 160 ~g~~~~~l~~~h~~~~~~~~~~~~~~~~~~G~~v~ysGDT~p~~~-----~~~~a~~aDlLiHE--at~ 221 (292)
T COG1234 160 PGPLITALKAGHPVEERVITPADRIGEPRKGKSVVYSGDTRPCDE-----LIDLAKGADLLIHE--ATF 221 (292)
T ss_pred CchHHHHHhCCCceeeeecCHHHhccccCCCcEEEEECCCCCCHH-----HHHHhcCCCEEEEe--ccC
Confidence 3578899999997 3333334433 3489999999552110 01123689999999 455
No 41
>PF11718 CPSF73-100_C: Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term; InterPro: IPR021718 This is the C-terminal conserved region of the pre-mRNA 3'-end-processing of the polyadenylation factor CPSF-73/CPSF-100 proteins. The exact function of this domain is not known.
Probab=54.61 E-value=50 Score=32.55 Aligned_cols=55 Identities=13% Similarity=0.019 Sum_probs=37.4
Q ss_pred eeeEEEEEEEeCCeeeeecCCCCCCC-------CCCCCceEecCCChHHHHHHHHHCCCceEE
Q 008169 464 ITRLKGRLFVNHGKHQLLPENEPGGS-------SQTRPFLHWGSPDPENLLAELSKMGINGSV 519 (575)
Q Consensus 464 ~a~v~g~l~~~~~~~~l~~~~~~~~~-------~~~~~~~~~g~~~~~~~~~~L~~~g~~~~~ 519 (575)
...|+|+|+.+|++|+|+.|.|-.+. ..++..+.+..- ++-++..|.+.-=..+.
T Consensus 2 G~~vsGvLV~~~f~~~lm~p~DL~~yt~L~ts~i~Qrq~i~~~~~-~~ll~~~L~~~fg~ve~ 63 (216)
T PF11718_consen 2 GQQVSGVLVKKDFDYHLMAPDDLREYTDLSTSTITQRQSIPFNGS-FSLLRWHLEQMFGDVEE 63 (216)
T ss_pred CcEEEEEEEecCCcccEEcHHHHhhcCCeeeeEEEEEEEEEeCCC-HHHHHHHHHHhhCceEE
Confidence 46899999999999999999875432 122334444433 77788888876544443
No 42
>PLN02962 hydroxyacylglutathione hydrolase
Probab=54.25 E-value=25 Score=35.53 Aligned_cols=46 Identities=13% Similarity=0.338 Sum_probs=31.4
Q ss_pred EecCCCEEEeCC-ceEEEeecCCccccceEEEEEeC----CeeEEEecCCCC
Q 008169 101 TLRFGEEACYNG-ILIIKAFSSGLDIGACNWIISGA----KGNIAYISGSNF 147 (575)
Q Consensus 101 ~v~y~q~~~l~g-~i~it~~~AGHiLGsa~~~I~~~----~~~I~YtgD~s~ 147 (575)
.++=++.+.+.+ .+++...+ ||..|+..|.+..+ ..+++|+||..+
T Consensus 103 ~l~~g~~i~~g~~~l~vi~tP-GHT~g~v~~~~~d~~~~~~~~~lftGD~Lf 153 (251)
T PLN02962 103 FVEPGDKIYFGDLYLEVRATP-GHTAGCVTYVTGEGPDQPQPRMAFTGDALL 153 (251)
T ss_pred EeCCCCEEEECCEEEEEEECC-CCCcCcEEEEeccCCCCCccceEEECCeec
Confidence 355667788754 24445444 99999999987532 357999999543
No 43
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=48.28 E-value=11 Score=33.19 Aligned_cols=78 Identities=10% Similarity=0.119 Sum_probs=54.7
Q ss_pred chHHHHHHHHhCCCCCcEEecCc------c-----chhhccCCCceeeeEEEEe-ecccCCChhhHHHHHhhc-CCCEEE
Q 008169 337 GPTIHLLRRWSGDHNSLLVLENE------V-----DAELAVLPFKPISMKVLQC-SFLSGKKLQKVQPLLKIL-QPKLVL 403 (575)
Q Consensus 337 G~s~~~l~~~~~d~~N~Iil~g~------~-----~~~~~l~~~~~v~~~v~~~-~fsaHaD~~~l~~~i~~~-~P~~vi 403 (575)
.++.+++-.-....-+.|++... + -+++++++|...++++.-+ +||.|+..+.+.+|+.+. +-++++
T Consensus 22 qdalDLi~~~~~~~~~~i~l~~~~l~~dFF~L~TglAGeiLQKf~NY~iklAivGD~s~~~~S~~l~dfi~EsN~G~~~~ 101 (113)
T PF13788_consen 22 QDALDLIGTAYEHGADRIILPKEALSEDFFDLRTGLAGEILQKFVNYRIKLAIVGDFSAYATSKSLRDFIYESNRGNHFF 101 (113)
T ss_pred hHHHHHHHHHHHcCCCEEEEEhHHCCHHHHHhhcchHHHHHHHHHhhceeEEEEEcccccccchhHHHHHHHhcCCCeEE
Confidence 46777775443334455555321 1 2256778899999999888 899998888999999987 667888
Q ss_pred EecCCcccccc
Q 008169 404 FPEEWRTHVSF 414 (575)
Q Consensus 404 lvHGe~~~~~~ 414 (575)
++.-..++..+
T Consensus 102 F~~~~~eA~~~ 112 (113)
T PF13788_consen 102 FVPDEEEAIAW 112 (113)
T ss_pred EECCHHHHHhh
Confidence 88766655444
No 44
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=45.30 E-value=1.1e+02 Score=30.95 Aligned_cols=120 Identities=14% Similarity=0.185 Sum_probs=64.9
Q ss_pred CCEEEeCCceEEEeec------CCccccce-EEEEEeCCeeEEEecCCCCC-CCCCCCCCCCCCCCCcEEEEcCCCCCCC
Q 008169 105 GEEACYNGILIIKAFS------SGLDIGAC-NWIISGAKGNIAYISGSNFA-SGHAMDFDYRAIQGSDLILYSDLSSLDS 176 (575)
Q Consensus 105 ~q~~~l~g~i~it~~~------AGHiLGsa-~~~I~~~~~~I~YtgD~s~~-~~~~~~~d~~~l~~~DvLI~e~~st~~~ 176 (575)
++++++ |+.+|.|-+ .|-=||-. ++.|+.++.+|+|++|.-+. ...+..+ -.-..+|++|+.+=-|
T Consensus 139 gk~f~f-G~t~IefS~pvpHG~eGskLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~~--i~e~~P~v~ii~GPpt--- 212 (304)
T COG2248 139 GKTFEF-GGTVIEFSPPVPHGREGSKLGYVLMVAVTDGKSSIVFASDVQGPINDEALEF--ILEKRPDVLIIGGPPT--- 212 (304)
T ss_pred CceEEe-CCEEEEecCCCCCCCcccccceEEEEEEecCCeEEEEcccccCCCccHHHHH--HHhcCCCEEEecCCch---
Confidence 667777 456776643 45567765 57777888999999997652 1111111 0124789999973122
Q ss_pred CccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHHHhcCCeEEEecCCh---hHHHHHHHHHHHHHHhC
Q 008169 177 TEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRV---GVFLQLLEQIAIFMECS 253 (575)
Q Consensus 177 ~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~tl~~GG~VLIP~fa~---GR~qELl~~L~~~~~~~ 253 (575)
|.+-.+-..+.. +.=+..+.+.+++.+..||--.-+ ++--|.+.-|...-+..
T Consensus 213 ---------------------y~lg~r~~~~~~---E~~irNl~~ii~~~~~~lViDHHllRD~~y~e~l~~l~~~~~~~ 268 (304)
T COG2248 213 ---------------------YLLGYRVGPKSL---EKGIRNLERIIEETNATLVIDHHLLRDKNYREFLEELFERAEKA 268 (304)
T ss_pred ---------------------hHhhhhcChHHH---HHHHHHHHHHHHhCcceEEEeehhhcCCCHHHHHHHHHhhHhhc
Confidence 111111111111 223445666777765555544433 33446666666655554
Q ss_pred C
Q 008169 254 S 254 (575)
Q Consensus 254 ~ 254 (575)
|
T Consensus 269 G 269 (304)
T COG2248 269 G 269 (304)
T ss_pred C
Confidence 4
No 45
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=44.97 E-value=62 Score=26.68 Aligned_cols=37 Identities=22% Similarity=0.151 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHCCCceEEeeccccCcCCCceEEEEeC
Q 008169 502 DPENLLAELSKMGINGSVERCMTDAESEDGFTVKVQD 538 (575)
Q Consensus 502 ~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 538 (575)
.|++++++|+++|+.++-.....+...|+-.||.=++
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~ 45 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQD 45 (80)
T ss_pred CchHHHHHHHHCCCEEEecCCccccCCcCEEEEECCC
Confidence 5789999999999999866544334455555655443
No 46
>PRK00055 ribonuclease Z; Reviewed
Probab=44.56 E-value=30 Score=34.48 Aligned_cols=56 Identities=5% Similarity=-0.111 Sum_probs=41.4
Q ss_pred cccCCChhhHHHHHhhcCCCEEEEecCCcccc---ccc----ccCCceeeecCCCcEEEeCCC
Q 008169 381 FLSGKKLQKVQPLLKILQPKLVLFPEEWRTHV---SFS----DVTSFSVSHYSENETIHIPSL 436 (575)
Q Consensus 381 fsaHaD~~~l~~~i~~~~P~~vilvHGe~~~~---~~l----~~~~~~v~~p~~~e~i~l~~~ 436 (575)
...|+...+..++.++++|+++++.|=.+... ..+ ++.-.++..+..|.+++++.+
T Consensus 207 ~~~H~~~~~a~~~~~~~~~~~~vl~H~~~~~~~~~~~~~~~~~~~~~~v~~a~Dg~~i~l~~~ 269 (270)
T PRK00055 207 EYGHSTARQAAEIAKEAGVKRLILTHFSPRYTGDPEELLKEAREIFPNTELAEDLMRVEVPFR 269 (270)
T ss_pred hcCCCCHHHHHHHHHHcCCCEEEEEeeccccCCCHHHHHHHHHHHcCCcEEccCCcEEEecCC
Confidence 56899999999999999999999999765322 111 111126788888889888754
No 47
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=42.64 E-value=20 Score=33.63 Aligned_cols=26 Identities=23% Similarity=0.147 Sum_probs=24.6
Q ss_pred cccCCChhhHHHHHhhcCCCEEEEec
Q 008169 381 FLSGKKLQKVQPLLKILQPKLVLFPE 406 (575)
Q Consensus 381 fsaHaD~~~l~~~i~~~~P~~vilvH 406 (575)
-..|++..++.+++++++|++++++|
T Consensus 168 ~~~h~~~~~~~~~~~~~~~~~~il~H 193 (194)
T PF12706_consen 168 GPGHMTLEEALELAKELKAKKVILIH 193 (194)
T ss_dssp CTTSBBHHHHHHHHHHHTTSEEEEES
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 37899999999999999999999999
No 48
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=39.98 E-value=55 Score=35.13 Aligned_cols=46 Identities=9% Similarity=-0.034 Sum_probs=31.6
Q ss_pred ceEecCCCEEEeCCceEEEeecC--CccccceEEEEEeCCeeEEEecCCCC
Q 008169 99 VQTLRFGEEACYNGILIIKAFSS--GLDIGACNWIISGAKGNIAYISGSNF 147 (575)
Q Consensus 99 i~~v~y~q~~~l~g~i~it~~~A--GHiLGsa~~~I~~~~~~I~YtgD~s~ 147 (575)
++.++-++++++.| =+++|.+| =|-.|+-.... ...+|+||+|.-+
T Consensus 121 ~~ivk~Gd~ldlGg-~tL~Fi~ap~LHWPd~m~TYd--~~~kILFS~D~fG 168 (388)
T COG0426 121 FKIVKTGDTLDLGG-HTLKFIPAPFLHWPDTMFTYD--PEDKILFSCDAFG 168 (388)
T ss_pred eeecCCCCEeccCC-cEEEEEeCCCCCCCCceeEee--cCCcEEEcccccc
Confidence 67888899999974 56666665 56566544332 2568999999543
No 49
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=39.93 E-value=30 Score=33.79 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCeEEEecCChhHHHHHHHHHHHHHHh
Q 008169 213 AFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMEC 252 (575)
Q Consensus 213 ~~l~~~I~~tl~~GG~VLIP~fa~GR~qELl~~L~~~~~~ 252 (575)
..+++.+.+.|+.||.++|-+|.-++.+|++..|..++.+
T Consensus 145 ~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~ 184 (209)
T PRK11188 145 ELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTK 184 (209)
T ss_pred HHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceE
Confidence 3467788999999999999999999999999888776654
No 50
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=36.34 E-value=70 Score=32.56 Aligned_cols=45 Identities=13% Similarity=0.235 Sum_probs=37.3
Q ss_pred EecCCCEEEeCCceEEEeec-CCccccceEEEEE-eCCeeEEEecCCC
Q 008169 101 TLRFGEEACYNGILIIKAFS-SGLDIGACNWIIS-GAKGNIAYISGSN 146 (575)
Q Consensus 101 ~v~y~q~~~l~g~i~it~~~-AGHiLGsa~~~I~-~~~~~I~YtgD~s 146 (575)
.++.++++.+. +++|+... =||.-|+-.+.+. ..+++.+||||..
T Consensus 95 ~~~~~e~~~~~-g~~v~~l~TPgHT~~hi~~~~~~~~~e~~iFtGDtl 141 (265)
T KOG0813|consen 95 GLKDGETVTVG-GLEVRCLHTPGHTAGHICYYVTESTGERAIFTGDTL 141 (265)
T ss_pred cCCCCcEEEEC-CEEEEEEeCCCccCCcEEEEeecCCCCCeEEeCCce
Confidence 38889999997 58888655 4999999999888 5679999999954
No 51
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=35.16 E-value=5.2e+02 Score=27.31 Aligned_cols=33 Identities=9% Similarity=0.231 Sum_probs=26.6
Q ss_pred eEEEeecCCcccc------ceEEEEEeCC--eeEEEecCCC
Q 008169 114 LIIKAFSSGLDIG------ACNWIISGAK--GNIAYISGSN 146 (575)
Q Consensus 114 i~it~~~AGHiLG------sa~~~I~~~~--~~I~YtgD~s 146 (575)
..+++++--|--+ |++|.|+.+. +.|+|.||.-
T Consensus 177 ~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~fGD~e 217 (335)
T PF02112_consen 177 SSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILFFGDTE 217 (335)
T ss_pred ccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEEEeCCC
Confidence 4567788888766 6999999874 9999999965
No 52
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=31.18 E-value=1.1e+02 Score=28.97 Aligned_cols=40 Identities=10% Similarity=0.180 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhcCCeEEEecCChhHHHHHHHHHHHHH
Q 008169 211 KLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFM 250 (575)
Q Consensus 211 ~l~~l~~~I~~tl~~GG~VLIP~fa~GR~qELl~~L~~~~ 250 (575)
....++..+.+.|++||.+++=++...+.-+++..|...+
T Consensus 124 ~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~ 163 (188)
T TIGR00438 124 LVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLF 163 (188)
T ss_pred HHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhh
Confidence 4456788899999999999997777777777777776654
No 53
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=29.75 E-value=97 Score=35.90 Aligned_cols=67 Identities=9% Similarity=0.094 Sum_probs=42.4
Q ss_pred eEecCCCEEEeCCceEEEeecCCcc------ccceEEEEEeCCeeEEEecCCCCCC-CCCCCCCCCCCCCCcEEEEc
Q 008169 100 QTLRFGEEACYNGILIIKAFSSGLD------IGACNWIISGAKGNIAYISGSNFAS-GHAMDFDYRAIQGSDLILYS 169 (575)
Q Consensus 100 ~~v~y~q~~~l~g~i~it~~~AGHi------LGsa~~~I~~~~~~I~YtgD~s~~~-~~~~~~d~~~l~~~DvLI~e 169 (575)
+.+.-++.+++. +++++.+.-+.. =.||.+.++.++.++++|||..... +.... .... -++|+|.+.
T Consensus 533 ~~~~~G~~~~~~-~~~~~vL~P~~~~~~~~N~~S~vl~i~~~~~~~L~tGD~~~~~E~~l~~-~~~~-l~~dvLk~~ 606 (662)
T TIGR00361 533 EECKRGDVWQWQ-GLQFHVLSPEAPDPASKNNHSCVLWVDDGGNSWLLTGDLEAEGEQEVMR-VFPN-IKADVLQVG 606 (662)
T ss_pred EecCCCCEEeEC-CEEEEEECCCCccCCCCCCCceEEEEEECCeeEEEecCCCHHHHHHHHh-cccC-cCccEEEeC
Confidence 345556667764 578887754321 2478899999999999999977531 11111 1112 268998886
No 54
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=29.08 E-value=88 Score=31.38 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=31.3
Q ss_pred ceEecCCCEEEeCCceEEEeec-CCccccceEEEEEeCCeeEEEecCCC
Q 008169 99 VQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGAKGNIAYISGSN 146 (575)
Q Consensus 99 i~~v~y~q~~~l~g~i~it~~~-AGHiLGsa~~~I~~~~~~I~YtgD~s 146 (575)
.+.+.-++.+.+.+ .+++.+. -||..|+..+.. ..++|+||..
T Consensus 86 ~~~v~~g~~i~ig~-~~~~vi~tPGHT~ghi~~~~----~~~lFtGDtl 129 (251)
T PRK10241 86 TQVVKDGETAFVLG-HEFSVFATPGHTLGHICYFS----KPYLFCGDTL 129 (251)
T ss_pred ceEeCCCCEEEeCC-cEEEEEEcCCCCccceeeec----CCcEEEcCee
Confidence 34566788888864 5666543 799999999964 2589999944
No 55
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=27.49 E-value=1.1e+02 Score=28.19 Aligned_cols=36 Identities=25% Similarity=0.229 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCeEEEecCChhHHHHHHHHHHHH
Q 008169 214 FICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIF 249 (575)
Q Consensus 214 ~l~~~I~~tl~~GG~VLIP~fa~GR~qELl~~L~~~ 249 (575)
.+|..+.++.++|.+|||-+-.-++.++|=..|.++
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~ 52 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTF 52 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhcc
Confidence 589999999999999999999999999888877654
No 56
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=27.28 E-value=1.2e+02 Score=29.41 Aligned_cols=45 Identities=18% Similarity=0.018 Sum_probs=31.2
Q ss_pred hHHHHHhhcCCCEEEEecCCcccccccccCCceeeecCCCcEEEeCCCCe
Q 008169 389 KVQPLLKILQPKLVLFPEEWRTHVSFSDVTSFSVSHYSENETIHIPSLKE 438 (575)
Q Consensus 389 ~l~~~i~~~~P~~vilvHGe~~~~~~l~~~~~~v~~p~~~e~i~l~~~~~ 438 (575)
....-++.+.|..|.|+.|+.+.- .+| +.....+.+.|.+|-.-+
T Consensus 129 ~~~pei~~l~~~~v~CiyG~~E~d-~~c----p~l~~~~~~~i~lpGgHH 173 (192)
T PF06057_consen 129 PVIPEIAKLPPAPVQCIYGEDEDD-SLC----PSLRQPGVEVIALPGGHH 173 (192)
T ss_pred CchHHHHhCCCCeEEEEEcCCCCC-CcC----ccccCCCcEEEEcCCCcC
Confidence 577788888999999999988764 333 112234567888886443
No 57
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=26.11 E-value=1e+02 Score=30.64 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=25.4
Q ss_pred ccCCChhhHHHHHhhcCCCEEEEecCCc
Q 008169 382 LSGKKLQKVQPLLKILQPKLVLFPEEWR 409 (575)
Q Consensus 382 saHaD~~~l~~~i~~~~P~~vilvHGe~ 409 (575)
-.|++..++.++++..+|+++++.|=..
T Consensus 196 ~~H~~~~~a~~~a~~~~~k~lvltH~~~ 223 (250)
T PRK11244 196 RNHNDLTTALAIIEVLRPPRVILTHISH 223 (250)
T ss_pred CCCCCHHHHHHHHHhcCCceEEEEcccC
Confidence 4799999999999999999999999644
No 58
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=24.69 E-value=1.2e+02 Score=25.28 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEecCCh
Q 008169 208 EMEKLAFICSCAIDSVKAGGSVLIPINRV 236 (575)
Q Consensus 208 ~~e~l~~l~~~I~~tl~~GG~VLIP~fa~ 236 (575)
-.+.++.|++.|.++|.+||+|-||-|-.
T Consensus 21 ~~~~v~~~~~~i~~~L~~~~~v~l~gfG~ 49 (90)
T PRK10664 21 AGRALDAIIASVTESLKEGDDVALVGFGT 49 (90)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECCcEE
Confidence 34567789999999999999999998743
No 59
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=22.97 E-value=4.3e+02 Score=23.68 Aligned_cols=65 Identities=20% Similarity=0.492 Sum_probs=41.6
Q ss_pred HHhcC--CeEEEe-cCChhH-HHHHHHHHHHHHHhCCCcccEEEECch------HHHHHHHHHHhHHhhhHHHHHhh
Q 008169 222 SVKAG--GSVLIP-INRVGV-FLQLLEQIAIFMECSSLKIPIYIISSV------AEELLAYTNTIPEWLCKQRQEKL 288 (575)
Q Consensus 222 tl~~G--G~VLIP-~fa~GR-~qELl~~L~~~~~~~~l~vpIy~~s~~------a~~~~~~~~~~~ewl~~~~~~~~ 288 (575)
.++.| ..|++- .+.+|| ..+++.++..+.+.+++ .|++.... ....+.+...+.||.++...+++
T Consensus 63 ~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~~gv--~l~~~~~~~d~~~~~~~~~~~~~~~ae~~~~~~~~~v 137 (140)
T cd03770 63 DIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPKKGV--RFIAINDGVDSADGDDDFIPFKNILNEWYAKDISRKI 137 (140)
T ss_pred HHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhhcCc--EEEEecCCcCCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 45667 666666 677888 68888888877666453 33332221 23456777778888887766554
No 60
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=22.79 E-value=2e+02 Score=29.84 Aligned_cols=95 Identities=11% Similarity=0.137 Sum_probs=60.5
Q ss_pred CCCCcEEecCccchh--hcc-CCCceeeeEEEEeecccC-CChhhHHHHHhhcCCCEEEEecCCccc--------ccccc
Q 008169 349 DHNSLLVLENEVDAE--LAV-LPFKPISMKVLQCSFLSG-KKLQKVQPLLKILQPKLVLFPEEWRTH--------VSFSD 416 (575)
Q Consensus 349 d~~N~Iil~g~~~~~--~~l-~~~~~v~~~v~~~~fsaH-aD~~~l~~~i~~~~P~~vilvHGe~~~--------~~~l~ 416 (575)
+-++.++|||+.... ..+ ....++++.|...+= | +....-..|+++++|+..++--|+.+. ++++.
T Consensus 180 ~g~~s~LlTGD~e~~~E~~l~~~~~~l~~dVLkV~H--HGS~tSss~~Fl~~v~Pk~AliS~G~~N~yghPh~~Vl~rl~ 257 (293)
T COG2333 180 FGGNSFLLTGDLEEKGEKLLKKYGPDLRADVLKVGH--HGSKTSSSLAFLEAVKPKVALISSGRNNRYGHPHQEVLERLQ 257 (293)
T ss_pred eCCeeEEEecCCCchhHHHHHhhCCCccceEEEecc--CCccccCcHHHHHhcCCcEEEEEeeccCCCCCCcHHHHHHHH
Confidence 356789999975442 222 334456777766532 3 334556789999999998888887443 44555
Q ss_pred cCCceeeecCCCcEEEeCCCCeeEEEEec
Q 008169 417 VTSFSVSHYSENETIHIPSLKESAELEIA 445 (575)
Q Consensus 417 ~~~~~v~~p~~~e~i~l~~~~~~~~v~l~ 445 (575)
+.+++++--...-+|.+.+....+.+.-.
T Consensus 258 ~~~~~v~rTd~~G~I~~~~~~~~~~~~~~ 286 (293)
T COG2333 258 KRGIKVYRTDQQGAITVTFSGDGWSIQTV 286 (293)
T ss_pred hcCCeEEecCCCCeEEEEeCCCeEEEEEE
Confidence 67788876655557777766554555433
No 61
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=22.46 E-value=96 Score=29.67 Aligned_cols=98 Identities=13% Similarity=0.106 Sum_probs=45.1
Q ss_pred CEEEEecCCCCCcchHHHHHHHHhCC-CCCcEEecCccchhhc-cCCCceeeeEEEEeecccCCChhhHHHHHhhcCCCE
Q 008169 324 PCIVFSPHWSLRLGPTIHLLRRWSGD-HNSLLVLENEVDAELA-VLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKL 401 (575)
Q Consensus 324 P~VV~as~gml~~G~s~~~l~~~~~d-~~N~Iil~g~~~~~~~-l~~~~~v~~~v~~~~fsaHaD~~~l~~~i~~~~P~~ 401 (575)
|.|-|=+...=+.--+..+++++... |.-.|++|-.-+.+.. .....+-...+.++|++. ..-+..+++.++|+.
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~---~~~~~rfl~~~~P~~ 98 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDF---PWAVRRFLDHWRPDL 98 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SS---HHHHHHHHHHH--SE
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccC---HHHHHHHHHHhCCCE
Confidence 67776654433333567788888875 6667777632111111 111111245566778743 445678999999999
Q ss_pred EEEecCC--cccccccccCCceeee
Q 008169 402 VLFPEEW--RTHVSFSDVTSFSVSH 424 (575)
Q Consensus 402 vilvHGe--~~~~~~l~~~~~~v~~ 424 (575)
+|++.+| ++-+..+++.|+++..
T Consensus 99 ~i~~EtElWPnll~~a~~~~ip~~L 123 (186)
T PF04413_consen 99 LIWVETELWPNLLREAKRRGIPVVL 123 (186)
T ss_dssp EEEES----HHHHHH-----S-EEE
T ss_pred EEEEccccCHHHHHHHhhcCCCEEE
Confidence 9999997 3334444456776655
No 62
>PRK02113 putative hydrolase; Provisional
Probab=22.42 E-value=96 Score=30.78 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=25.2
Q ss_pred cccCCChhhHHHHHhhcCCCEEEEecCC
Q 008169 381 FLSGKKLQKVQPLLKILQPKLVLFPEEW 408 (575)
Q Consensus 381 fsaHaD~~~l~~~i~~~~P~~vilvHGe 408 (575)
...|...++..+++++.++++++++|=.
T Consensus 197 ~~~H~t~~~a~~~~~~~~~k~l~l~H~s 224 (252)
T PRK02113 197 HPTHQSLEEALENIKRIGAKETYLIHMS 224 (252)
T ss_pred CCCcCCHHHHHHHHHHhCCCEEEEEccc
Confidence 3579999999999999999999999943
No 63
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.02 E-value=4.9e+02 Score=22.04 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=34.3
Q ss_pred CCChHHHHHHHHHCCCceEEeeccccCcCCCceEEEEeCCCCcEEEEcC
Q 008169 500 SPDPENLLAELSKMGINGSVERCMTDAESEDGFTVKVQDPEKSMIEVRA 548 (575)
Q Consensus 500 ~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 548 (575)
.++.+.+.+.|+++|++.+.++.-.+++......|.+.. +...+.+++
T Consensus 11 ~~~~dri~~~l~e~g~~v~~eGD~ivas~pgis~ieik~-E~kkL~v~t 58 (96)
T COG4004 11 KPDPDRIMRGLSELGWTVSEEGDRIVASSPGISRIEIKP-ENKKLLVNT 58 (96)
T ss_pred CCCHHHHHHHHHHhCeeEeecccEEEEecCCceEEEEec-ccceEEEec
Confidence 678999999999999988876654444555445555544 666676665
No 64
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=21.98 E-value=90 Score=28.18 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=25.8
Q ss_pred EeecccCCChhhHHHHHhhcCCCEEEEecCC
Q 008169 378 QCSFLSGKKLQKVQPLLKILQPKLVLFPEEW 408 (575)
Q Consensus 378 ~~~fsaHaD~~~l~~~i~~~~P~~vilvHGe 408 (575)
-..+++|.+.+.|.+.+++++|+.|++...+
T Consensus 27 v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~ 57 (129)
T PF02670_consen 27 VVALSAGSNIEKLAEQAREFKPKYVVIADEE 57 (129)
T ss_dssp EEEEEESSTHHHHHHHHHHHT-SEEEESSHH
T ss_pred EEEEEcCCCHHHHHHHHHHhCCCEEEEcCHH
Confidence 3578999999999999999999998877543
No 65
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=21.49 E-value=1e+02 Score=28.26 Aligned_cols=34 Identities=24% Similarity=0.200 Sum_probs=23.0
Q ss_pred eeEEEEeecccC--CChhhHHHHHhhcCCCEEEEec
Q 008169 373 SMKVLQCSFLSG--KKLQKVQPLLKILQPKLVLFPE 406 (575)
Q Consensus 373 ~~~v~~~~fsaH--aD~~~l~~~i~~~~P~~vilvH 406 (575)
++.|..+|+.+. .+.++..++++.++||.|+=+|
T Consensus 128 ~vDvl~~p~~g~~~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 128 KVDVLFLPVGGPFTMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp S-SEEEEE--TTTS--HHHHHHHHHHCT-SEEEEES
T ss_pred CCCEEEecCCCCcccCHHHHHHHHHHcCCCEEEeCC
Confidence 345566677664 6899999999999999998877
No 66
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=21.32 E-value=1.8e+02 Score=28.55 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCeEEEecCChhHHHHHHHHHHHHHHhC
Q 008169 215 ICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECS 253 (575)
Q Consensus 215 l~~~I~~tl~~GG~VLIP~fa~GR~qELl~~L~~~~~~~ 253 (575)
.++...+.|+.||+-++.+|--|-..+++..+.++++.-
T Consensus 141 a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v 179 (205)
T COG0293 141 ALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKV 179 (205)
T ss_pred HHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhcee
Confidence 344556688999999999999999999999999887653
No 67
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=21.27 E-value=83 Score=31.01 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=25.9
Q ss_pred ccCCChhhHHHHHhhcCCCEEEEecCCcc
Q 008169 382 LSGKKLQKVQPLLKILQPKLVLFPEEWRT 410 (575)
Q Consensus 382 saHaD~~~l~~~i~~~~P~~vilvHGe~~ 410 (575)
..|++..++.+++++.+|+++++.|=...
T Consensus 186 ~~H~~~~~~~~~~~~~~~~~lil~H~~~~ 214 (238)
T TIGR03307 186 RNHNDLTRALAINEQLRPKQVILTHISHQ 214 (238)
T ss_pred CCcCCHHHHHHHHHHcCCCEEEEEecccc
Confidence 36999999999999999999999998653
No 68
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=21.19 E-value=1.8e+02 Score=28.98 Aligned_cols=68 Identities=16% Similarity=0.124 Sum_probs=43.9
Q ss_pred hcceEecCCCEEEeCCceEEEee-----cCCcc--------ccceEEEEEeCCeeEEEecCCCCCCCCCCCCCCCCCCCC
Q 008169 97 SKVQTLRFGEEACYNGILIIKAF-----SSGLD--------IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGS 163 (575)
Q Consensus 97 ~~i~~v~y~q~~~l~g~i~it~~-----~AGHi--------LGsa~~~I~~~~~~I~YtgD~s~~~~~~~~~d~~~l~~~ 163 (575)
.++..+++++.+++.+ +++++. ++-|- -+.+.|.|+.++.+|.+.||.... ..........+
T Consensus 100 ~~~~~~~~~~~~~~~~-~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g~~iyh~GDt~~~----~~~~~~~~~~~ 174 (258)
T COG2220 100 ERVHELGWGDVIELGD-LEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGGRVYHAGDTGYL----FLIIEELDGPV 174 (258)
T ss_pred ceEEeecCCceEEecC-cEEEEEEeecccccccCCCCccccCCceEEEEEeCCceEEeccCccHH----HHhhhhhcCCc
Confidence 3577888999999964 555433 23333 447789999999999999995530 00011112237
Q ss_pred cEEEEc
Q 008169 164 DLILYS 169 (575)
Q Consensus 164 DvLI~e 169 (575)
|++++.
T Consensus 175 DvallP 180 (258)
T COG2220 175 DVALLP 180 (258)
T ss_pred cEEEec
Confidence 998887
No 69
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=20.84 E-value=1.5e+02 Score=27.75 Aligned_cols=37 Identities=11% Similarity=0.097 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEecCChhHHHHHHHHHHH
Q 008169 212 LAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAI 248 (575)
Q Consensus 212 l~~l~~~I~~tl~~GG~VLIP~fa~GR~qELl~~L~~ 248 (575)
...|+..+.+.|+.||.+++-.......++++..|.+
T Consensus 119 ~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~ 155 (179)
T TIGR00537 119 IDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDE 155 (179)
T ss_pred HHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHh
Confidence 4568889999999999999877666557788777754
No 70
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=20.26 E-value=1.6e+02 Score=28.08 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCeEEEecCChhHHHHHHHHHHH
Q 008169 214 FICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAI 248 (575)
Q Consensus 214 ~l~~~I~~tl~~GG~VLIP~fa~GR~qELl~~L~~ 248 (575)
.+++.+.+.|+.||.+++-+...+...+++..|.+
T Consensus 126 ~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 160 (198)
T PRK00377 126 EIISASWEIIKKGGRIVIDAILLETVNNALSALEN 160 (198)
T ss_pred HHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHH
Confidence 36677888999999999988888888888887754
Done!