Query 008169
Match_columns 575
No_of_seqs 303 out of 1266
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 19:47:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008169.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008169hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iek_A Ribonuclease TTHA0252; 100.0 5.4E-62 1.8E-66 526.1 33.1 347 2-433 64-431 (431)
2 2i7t_A Cleavage and polyadenyl 100.0 7.9E-57 2.7E-61 489.8 29.1 353 2-435 76-458 (459)
3 3af5_A Putative uncharacterize 100.0 2.3E-49 7.9E-54 447.5 34.4 357 2-433 261-650 (651)
4 2xr1_A Cleavage and polyadenyl 100.0 2.7E-48 9.3E-53 437.7 33.1 357 2-433 250-639 (640)
5 2ycb_A Beta-CAsp RNAse, cleava 100.0 6.8E-48 2.3E-52 434.7 32.8 356 2-433 247-635 (636)
6 2i7x_A Protein CFT2; polyadeny 100.0 1.5E-40 5E-45 377.6 34.1 278 2-361 66-371 (717)
7 3zq4_A Ribonuclease J 1, RNAse 100.0 2.8E-30 9.7E-35 286.1 17.9 312 2-436 79-427 (555)
8 3bk2_A RNAse J, metal dependen 100.0 2.1E-28 7.3E-33 272.0 23.3 315 2-437 87-443 (562)
9 2az4_A Hypothetical protein EF 99.9 3.7E-22 1.3E-26 214.7 16.5 274 97-433 142-429 (429)
10 3zdk_A 5' exonuclease apollo; 99.8 7.2E-20 2.5E-24 190.4 18.8 259 2-410 37-304 (336)
11 4b87_A DNA cross-LINK repair 1 99.8 4.9E-19 1.7E-23 186.4 20.8 239 98-408 96-345 (367)
12 1y44_A Ribonuclease Z; zinc-de 97.1 0.00026 9E-09 72.0 3.9 69 99-175 117-235 (320)
13 2e7y_A TRNAse Z; tRNA maturati 97.0 0.0005 1.7E-08 68.1 5.5 68 98-174 105-211 (280)
14 2cbn_A Ribonuclease Z; phospho 96.7 0.00077 2.6E-08 67.9 3.9 68 100-175 120-237 (306)
15 2r2d_A AGR_PTI_140P, Zn-depend 96.6 0.0045 1.5E-07 61.1 8.6 49 98-147 165-216 (276)
16 3g1p_A Protein PHNP; C-P lyase 96.4 0.0044 1.5E-07 60.9 6.8 68 100-174 121-190 (258)
17 1zkp_A Hypothetical protein BA 96.4 0.0043 1.5E-07 61.2 6.5 66 98-169 134-199 (268)
18 3esh_A Protein similar to meta 96.2 0.0064 2.2E-07 60.5 6.5 42 105-147 168-209 (280)
19 3md7_A Beta-lactamase-like; ss 95.9 0.0053 1.8E-07 61.7 4.5 65 98-170 163-231 (293)
20 3kl7_A Putative metal-dependen 95.9 0.016 5.6E-07 56.2 7.8 77 86-169 92-181 (235)
21 3jxp_A Coenzyme PQQ synthesis 95.8 0.0093 3.2E-07 61.0 6.0 68 99-170 139-223 (321)
22 2fhx_A SPM-1; metallo-beta-lac 95.0 0.069 2.3E-06 51.5 9.0 44 101-147 142-187 (246)
23 3adr_A Putative uncharacterize 93.7 0.11 3.9E-06 50.3 7.2 44 98-146 123-167 (261)
24 3l6n_A Metallo-beta-lactamase; 93.3 0.15 5.1E-06 48.1 7.0 44 100-146 115-160 (219)
25 2wyl_A L-ascorbate-6-phosphate 91.1 0.4 1.4E-05 49.4 7.5 68 98-169 160-248 (360)
26 1ztc_A Hypothetical protein TM 90.7 0.27 9.3E-06 46.7 5.5 48 97-146 128-176 (221)
27 1vjn_A Zn-dependent hydrolase 89.9 0.38 1.3E-05 45.9 5.8 60 106-169 79-145 (220)
28 3m8t_A 'BLR6230 protein; subcl 89.5 0.43 1.5E-05 47.0 6.1 46 100-146 154-204 (294)
29 4hl2_A Beta-lactamase NDM-1; s 89.0 0.099 3.4E-06 50.4 0.8 44 101-147 141-184 (243)
30 4ax1_B Metallo-beta-lactamase 88.7 0.27 9.3E-06 48.6 3.9 48 98-146 157-208 (303)
31 2p18_A Glyoxalase II; metallop 88.6 0.67 2.3E-05 46.7 6.7 47 99-146 131-182 (311)
32 3zwf_A Zinc phosphodiesterase 87.3 0.46 1.6E-05 49.2 4.7 24 112-135 169-192 (368)
33 2zo4_A Metallo-beta-lactamase 86.8 11 0.00039 37.0 14.7 47 98-147 146-193 (317)
34 1k07_A FEZ-1 beta-lactamase; m 86.3 1.3 4.6E-05 42.8 7.2 47 99-146 125-176 (263)
35 3bv6_A Metal-dependent hydrola 86.0 1.3 4.4E-05 45.9 7.2 68 98-169 184-273 (379)
36 4dik_A Flavoprotein; TM0755, e 85.5 1.2 4.1E-05 46.8 6.7 80 2-147 102-183 (410)
37 2xf4_A Hydroxyacylglutathione 84.5 0.8 2.7E-05 42.7 4.4 44 100-146 109-153 (210)
38 2q9u_A A-type flavoprotein; fl 84.3 1.6 5.3E-05 45.5 7.0 43 100-145 128-172 (414)
39 4efz_A Metallo-beta-lactamase 84.3 1.5 5.3E-05 43.5 6.7 46 100-146 124-176 (298)
40 3iog_A Beta-lactamase; hydrola 84.2 0.51 1.7E-05 44.4 2.9 38 106-146 129-167 (227)
41 3aj3_A MLR6805 protein, 4-pyri 84.0 0.77 2.6E-05 44.7 4.2 40 106-146 169-209 (274)
42 4ad9_A Lactb2, beta-lactamase- 83.8 1.2 4.2E-05 43.8 5.6 47 98-147 121-168 (289)
43 3q6v_A Beta-lactamase; metallo 83.5 1.3 4.5E-05 41.7 5.5 32 113-147 140-171 (233)
44 2gcu_A Putative hydroxyacylglu 83.2 1.5 5.2E-05 42.3 5.9 48 99-147 93-145 (245)
45 1p9e_A Methyl parathion hydrol 82.2 1.4 4.8E-05 44.6 5.4 48 97-147 211-258 (331)
46 3dha_A N-acyl homoserine lacto 81.8 2 6.7E-05 41.2 6.1 41 105-147 157-198 (254)
47 2vw8_A PA1000, PQSE; quinolone 80.7 1.7 5.8E-05 43.0 5.4 46 99-146 136-182 (303)
48 1qh5_A Glyoxalase II, protein 80.6 1.9 6.6E-05 42.0 5.6 47 99-146 86-136 (260)
49 3tp9_A Beta-lactamase and rhod 80.6 2.4 8.2E-05 45.1 6.8 46 100-146 100-151 (474)
50 1e5d_A Rubredoxin\:oxygen oxid 79.5 1.8 6.3E-05 44.6 5.4 46 98-146 120-167 (402)
51 3rpc_A Possible metal-dependen 78.4 2.2 7.4E-05 41.6 5.2 62 104-169 114-190 (264)
52 1m2x_A Class B carbapenemase B 78.0 2.5 8.5E-05 39.7 5.4 44 100-146 111-156 (223)
53 1xm8_A Glyoxalase II; structur 75.9 2.6 9E-05 40.9 4.9 44 100-146 89-133 (254)
54 2qed_A Hydroxyacylglutathione 74.8 2.9 9.9E-05 40.7 4.9 44 98-146 92-136 (258)
55 1a7t_A Metallo-beta-lactamase; 74.4 3.2 0.00011 39.2 5.0 45 100-147 121-167 (232)
56 3r2u_A Metallo-beta-lactamase 73.8 4.8 0.00016 42.8 6.7 49 98-147 118-172 (466)
57 2ohh_A Type A flavoprotein FPR 73.6 2.7 9.2E-05 43.3 4.6 46 98-146 125-172 (404)
58 3rpc_A Possible metal-dependen 71.3 3.5 0.00012 40.1 4.5 52 382-433 202-264 (264)
59 1mqo_A Beta-lactamase II; alph 71.3 3.4 0.00012 38.9 4.4 43 101-146 126-170 (227)
60 2wyl_A L-ascorbate-6-phosphate 69.6 3.1 0.0001 42.6 3.9 59 382-440 257-330 (360)
61 1ycg_A Nitric oxide reductase; 68.2 4.7 0.00016 41.4 5.0 45 99-146 122-168 (398)
62 3bv6_A Metal-dependent hydrola 66.6 3.8 0.00013 42.3 3.9 58 382-439 282-354 (379)
63 2zwr_A Metallo-beta-lactamase 65.1 3.9 0.00013 37.8 3.3 40 101-146 107-146 (207)
64 2p97_A Hypothetical protein; p 63.6 4.4 0.00015 37.4 3.3 41 101-146 99-139 (201)
65 3hnn_A Putative diflavin flavo 63.2 7.8 0.00027 37.4 5.2 46 98-145 128-175 (262)
66 2y8b_A Metallo-B-lactamase; hy 59.4 7.9 0.00027 37.5 4.5 41 104-147 160-200 (265)
67 1sml_A Protein (penicillinase) 57.3 19 0.00066 34.4 6.9 46 100-146 137-186 (269)
68 3kl7_A Putative metal-dependen 46.0 31 0.0011 32.6 6.2 38 379-416 182-219 (235)
69 2bib_A CBPE, teichoic acid pho 40.4 38 0.0013 36.3 6.5 66 102-169 148-227 (547)
70 2e7y_A TRNAse Z; tRNA maturati 34.4 32 0.0011 32.8 4.3 52 382-433 220-280 (280)
71 3md7_A Beta-lactamase-like; ss 33.7 38 0.0013 33.0 4.8 54 381-434 237-292 (293)
72 1y44_A Ribonuclease Z; zinc-de 33.4 38 0.0013 33.2 4.7 58 381-438 244-309 (320)
73 1jjt_A IMP-1 metallo beta-lact 32.8 21 0.00072 33.3 2.6 38 106-146 121-160 (228)
74 1zkp_A Hypothetical protein BA 25.3 77 0.0026 30.0 5.2 50 383-432 212-267 (268)
75 3zwf_A Zinc phosphodiesterase 23.1 1.1E+02 0.0037 31.1 6.0 57 382-438 287-362 (368)
76 1ej0_A FTSJ; methyltransferase 23.1 47 0.0016 28.5 2.9 39 213-251 116-154 (180)
77 2nyu_A Putative ribosomal RNA 23.0 47 0.0016 29.5 3.0 38 213-250 125-162 (196)
78 3dou_A Ribosomal RNA large sub 22.0 33 0.0011 31.2 1.7 37 213-249 119-155 (191)
79 3rhi_A DNA-binding protein HU; 20.3 86 0.0029 25.1 3.7 28 208-235 24-51 (93)
No 1
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=100.00 E-value=5.4e-62 Score=526.06 Aligned_cols=347 Identities=19% Similarity=0.199 Sum_probs=294.3
Q ss_pred cccccchhccccCCcceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhHhhhhccCCCCC
Q 008169 2 GMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSE 81 (575)
Q Consensus 2 ~~~aLP~l~~~~gf~g~IY~T~pT~~l~~llL~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 81 (575)
|+++||+|.+ .||+++||||+||+++++.++.|+.++++
T Consensus 64 H~gglp~l~~-~~~~~~Iy~t~~t~~l~~~~l~d~~~~~~---------------------------------------- 102 (431)
T 3iek_A 64 HVGRLPKLFR-EGYRGPVYATRATVLLMEIVLEDALKVMD---------------------------------------- 102 (431)
T ss_dssp HHTTHHHHHH-TTCCSCEEECHHHHHHHHHHHHHHHHHCS----------------------------------------
T ss_pred HhccHHHHHH-cCCCCeEEEcHHHHHHHHHHHHHHHhhcc----------------------------------------
Confidence 5799999998 68999999999999999999999876531
Q ss_pred CCCCCchH--HHHHHHHhcceEecCCCEEEeCCceEEEeecCCccccceEEEEEeCCeeEEEecCCCCCCCCCCCCCCCC
Q 008169 82 LGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRA 159 (575)
Q Consensus 82 ~~~~~~ly--~dv~~~~~~i~~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s~~~~~~~~~d~~~ 159 (575)
.++| +|++.++.++++++|++++++ ++++++++++||++||++|.|+.++.+|+||||+...... ...++..
T Consensus 103 ----~~~y~~~~~~~~~~~~~~l~~~~~~~l-~g~~v~~~~agH~~Gs~~~~i~~~~~~ilfsGD~~~~~~~-~l~~~~~ 176 (431)
T 3iek_A 103 ----EPFFGPEDVEEALGHLRPLEYGEWLRL-GALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKD-VLPDPSL 176 (431)
T ss_dssp ----SCSSCHHHHHHHHHTEEECCTTCCEEE-TTEEEEEEECCSSTTCEEEEEEETTEEEEECCCCCCTTSS-SSCCCCB
T ss_pred ----cCCCCHHHHHHHHhccEEcCCCCeEEe-CCEEEEEEeCCCCcCceEEEEEECCEEEEEeCCCCCCCCc-ccCCccc
Confidence 1567 999999999999999999999 5799999999999999999999999999999998754221 1113345
Q ss_pred CCCCcEEEEcCCCCCCCCccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHHHhcCCeEEEecCChhHH
Q 008169 160 IQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVF 239 (575)
Q Consensus 160 l~~~DvLI~e~~st~~~~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~tl~~GG~VLIP~fa~GR~ 239 (575)
+.++|+||+| +||+ .+.++++ .++.++|++.|.+++++||+||||+|++||+
T Consensus 177 ~~~~D~LI~E--sTy~------------------------~~~h~~~--~~~~~~l~~~i~~~~~~gg~vlIp~fa~gR~ 228 (431)
T 3iek_A 177 PPLADLVLAE--GTYG------------------------DRPHRPY--RETVREFLEILEKTLSQGGKVLIPTFAVERA 228 (431)
T ss_dssp CCCCSEEEEE--CTTT------------------------TCCCCCH--HHHHHHHHHHHHHHHHTTCEEEEECCTTTHH
T ss_pred cCCccEEEEE--cccC------------------------CcCCCCh--HHHHHHHHHHHHHHHHcCCeEEEEeccchHH
Confidence 6789999999 5664 1112222 2344679999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCc-ccEEEECchHHHHHHHHHHhHHhhhHHHHHhhccCCCCCcchhhhhcccccccCCCCChhhh
Q 008169 240 LQLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLL 318 (575)
Q Consensus 240 qELl~~L~~~~~~~~l~-vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~e~pF~~~~l~~~~~l~~~~~i~~~~~~ 318 (575)
|||+++|+++|++ ++ +|||++||||.+++++|+.|.|||+++.++....+++||.+..+ +.+++......+
T Consensus 229 qell~~l~~~~~~--~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~~------~~~~~~~~~~~~ 300 (431)
T 3iek_A 229 QEILYVLYTHGHR--LPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGL------EVVEHTEASKAL 300 (431)
T ss_dssp HHHHHHHHHHGGG--SCCCCEEEECHHHHHHHHHGGGGGGGSCHHHHHHHHTTSCTTCCTTE------EECCSHHHHHHH
T ss_pred HHHHHHHHHHHHh--ccCCCEEEeChHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCe------EEeCCHHHHHHH
Confidence 9999999999988 65 99999999999999999999999999998877778899966432 334433322345
Q ss_pred hccCCCEEEEecCCCCCcchHHHHHHHHhCCCCCcEEecCccchhhc-------------cCCCceeeeEEEEe-ecccC
Q 008169 319 MNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELA-------------VLPFKPISMKVLQC-SFLSG 384 (575)
Q Consensus 319 ~~~~~P~VV~as~gml~~G~s~~~l~~~~~d~~N~Iil~g~~~~~~~-------------l~~~~~v~~~v~~~-~fsaH 384 (575)
+..++||||||+||||++|++++||++|++||+|+||||||+.+++. .+...+|+|+|+++ +||||
T Consensus 301 ~~~~~p~viia~~gm~~~G~~~~~l~~~~~~~~n~ii~~gyq~~gt~g~~l~~~~~~v~~~g~~~~v~a~v~~~~~~saH 380 (431)
T 3iek_A 301 NRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGH 380 (431)
T ss_dssp HHSCSSEEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHHTCCSEEEETTEEEECCSEEEECGGGCSS
T ss_pred hcCCCCeEEEecCCCCCCChHHHHHHHhcCCCCCeEEEECCCCCCChHHHhhcCCcEEEECCEEEEEEEEEEEECCcccc
Confidence 66799999999999999999999999999999999999999887531 24457899999999 69999
Q ss_pred CChhhHHHHHhhcCCCEEEEecCCcccccccc----cCCceeeecCCCcEEEe
Q 008169 385 KKLQKVQPLLKILQPKLVLFPEEWRTHVSFSD----VTSFSVSHYSENETIHI 433 (575)
Q Consensus 385 aD~~~l~~~i~~~~P~~vilvHGe~~~~~~l~----~~~~~v~~p~~~e~i~l 433 (575)
||+++|++|++.++ +|+|||||++++..|+ +.+.++++|++||++++
T Consensus 381 ad~~~l~~~~~~~~--~v~lvHge~~~~~~l~~~l~~~~~~~~~p~~~~~~~~ 431 (431)
T 3iek_A 381 AGQDELLDWLQGEP--RVVLVHGEEEKLLALGKLLALRGQEVSLARFGEGVPV 431 (431)
T ss_dssp CCHHHHHHHHTTCS--EEEEESSCHHHHHHHHHHHHHTTCEEEECCTTCCEEC
T ss_pred CCHHHHHHHHHhCC--eEEEECCCHHHHHHHHHHHHHhCCcEEECCCCCEEeC
Confidence 99999999999875 8999999999999997 34559999999999875
No 2
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=100.00 E-value=7.9e-57 Score=489.84 Aligned_cols=353 Identities=18% Similarity=0.269 Sum_probs=258.0
Q ss_pred cccccchhccccCCcceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhHhhhhccCCCCC
Q 008169 2 GMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSE 81 (575)
Q Consensus 2 ~~~aLP~l~~~~gf~g~IY~T~pT~~l~~llL~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 81 (575)
|+++||++.++.||+++||||++|+++++.++.|++++++. .
T Consensus 76 H~ggl~~l~~~~~~~~~iy~t~~t~~l~~~~l~d~~~~~~~-------------------------------------~- 117 (459)
T 2i7t_A 76 HCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI-------------------------------------S- 117 (459)
T ss_dssp HHTTHHHHHHHSSCCSEEEEEHHHHHHHHHHHHHHCC-------------------------------------------
T ss_pred hhhhhHHHHHhcCCCCCEEechHHHHHHHHHHHHHHHHhcc-------------------------------------c-
Confidence 57999999988899999999999999999999998755421 0
Q ss_pred CCCCCchH--HHHHHHHhcceEecCCCEEEeCCceEEEeecCCccccceEEEEEeCCeeEEEecCCCCCC-CCCCCCCCC
Q 008169 82 LGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFAS-GHAMDFDYR 158 (575)
Q Consensus 82 ~~~~~~ly--~dv~~~~~~i~~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s~~~-~~~~~~d~~ 158 (575)
.+.++| +|++.++++++.++|++++.+. +++++++++||++||++|.|+.++++|+||||+.... .+....+.
T Consensus 118 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gi~v~~~~~GH~~Gs~~~~i~~~~~~il~sGD~~~~~~~~~~~~~~- 193 (459)
T 2i7t_A 118 --ADDMLYTETDLEESMDKIETINFHEVKEVA-GIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEI- 193 (459)
T ss_dssp ------CCCHHHHHHHGGGEEEECTTCCEEET-TEEEEEEECCSSTTCEEEEEEETTEEEEECCSCCCC-----CCCCC-
T ss_pred --ccccccCHHHHHHHHhccEEeCCCCEEEEC-CEEEEEEeCCCccCcEEEEEEECCcEEEEeCCCCCCCCcccCCCCc-
Confidence 113566 7899999999999999999995 6999999999999999999999999999999987642 22222222
Q ss_pred CCCCCcEEEEcCCCCCCCCccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHHHhcCCeEEEecCChhH
Q 008169 159 AIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGV 238 (575)
Q Consensus 159 ~l~~~DvLI~e~~st~~~~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~tl~~GG~VLIP~fa~GR 238 (575)
...++|+||+| +||+ ...+.++. ++.++|++.|.+++++||+|+||+|++||
T Consensus 194 ~~~~~D~Li~E--sty~------------------------~~~~~~~~--~~~~~l~~~i~~~~~~~g~vlip~fa~gr 245 (459)
T 2i7t_A 194 PNIKPDILIIE--STYG------------------------THIHEKRE--EREARFCNTVHDIVNRGGRGLIPVFALGR 245 (459)
T ss_dssp CSSCCSEEEEE--CTTT------------------------TCCCCCHH--HHHHHHHHHHHHHHHTTCEEEEECCSSSS
T ss_pred CCCCCeEEEEC--CCCC------------------------CCCCCChH--HHHHHHHHHHHHHHHCCCEEEEEecchhH
Confidence 12489999999 5664 11122222 34467999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCc-ccEEEECchHHHHHHHHHHhHHhhhHHHHHhhccCCCCCcchhhhhcccccccCCCCChh
Q 008169 239 FLQLLEQIAIFMECS-SLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPK 316 (575)
Q Consensus 239 ~qELl~~L~~~~~~~-~l~-vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~e~pF~~~~l~~~~~l~~~~~i~~~~ 316 (575)
+|||+++|+++|+++ .++ +|||++||||.+++++|+.+.+||++..++. +..++||.+..+ ..+.+. +
T Consensus 246 ~qell~~l~~~~~~~~~~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~------~~~~~~---~ 315 (459)
T 2i7t_A 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQ-ININNPFVFKHI------SNLKSM---D 315 (459)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEC----------------------------------CCSE------EECCCT---T
T ss_pred HHHHHHHHHHHHHhcCCCCCccEEEECHHHHHHHHHHHHHHHHHhHHHHHH-hcccCCcCCCcc------eeeCCH---H
Confidence 999999999999986 355 9999999999999999999999999887654 445778754322 112221 1
Q ss_pred hhhccCCCEEEEecCCCCCcchHHHHHHHHhCCCCCcEEecCccchhh--------------ccCCCceeeeEEEEeecc
Q 008169 317 LLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAEL--------------AVLPFKPISMKVLQCSFL 382 (575)
Q Consensus 317 ~~~~~~~P~VV~as~gml~~G~s~~~l~~~~~d~~N~Iil~g~~~~~~--------------~l~~~~~v~~~v~~~~fs 382 (575)
.+ ...+||||||+||||++|+++++|++|++||+|+|||+||+..+. ..+..++++|+|++++||
T Consensus 316 ~~-~~~~~~viia~~gm~~~g~~~~~l~~~~~~~~~~ii~~gy~~~gt~g~~l~~~~~~~~~~~g~~~~~~~~v~~~~~S 394 (459)
T 2i7t_A 316 HF-DDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFS 394 (459)
T ss_dssp SS-CCCSSEEEEESCTTCSSHHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHTTCCSEEECTTSCEEECCSEEEECCCS
T ss_pred Hh-cCCCCeEEEEcCcccCCCHHHHHHHHHcCCCCCeEEEEecCCCCChHHHHhhCCceeeeeCCcEEEEEEEEEEeeec
Confidence 22 357899999999999999999999999999999999999976643 124456899999999999
Q ss_pred cCCChhhHHHHHhhcCCCEEEEecCCccccccccc-----C------CceeeecCCCcEEEeCC
Q 008169 383 SGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDV-----T------SFSVSHYSENETIHIPS 435 (575)
Q Consensus 383 aHaD~~~l~~~i~~~~P~~vilvHGe~~~~~~l~~-----~------~~~v~~p~~~e~i~l~~ 435 (575)
+|||+.+|++||+.++|++|++||||++++..|++ . ++++++|++||++++.+
T Consensus 395 ~Had~~~l~~~i~~~~p~~v~~vHGe~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~ 458 (459)
T 2i7t_A 395 AHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNF 458 (459)
T ss_dssp CCCCHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHHHHHHSSCTTCCCEEECCCTTCCEEEEE
T ss_pred ccCCHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHHHHHHhccccccCceEEeCCCCCEEEEEe
Confidence 99999999999999999999999999999888762 1 58999999999999865
No 3
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=100.00 E-value=2.3e-49 Score=447.49 Aligned_cols=357 Identities=18% Similarity=0.253 Sum_probs=287.6
Q ss_pred cccccchhccccC-CcceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhHhhhhccCCCC
Q 008169 2 GMLGLPFLTRMEG-FSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGS 80 (575)
Q Consensus 2 ~~~aLP~l~~~~g-f~g~IY~T~pT~~l~~llL~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 80 (575)
|+++||+|.+ .+ |+++||||.+|+++.+.++.|+.++++..
T Consensus 261 HiGglp~L~~-~~~~~~pIy~t~~t~~ll~~~l~d~~~~~~~~------------------------------------- 302 (651)
T 3af5_A 261 HCGMLPYLFR-YNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSN------------------------------------- 302 (651)
T ss_dssp HHTTHHHHHH-TTCCCSCEEECHHHHHHHHHHHHHHHHHHHHT-------------------------------------
T ss_pred hhcCHHHHHh-cCCCCceEEEcHHHHHHHHHHHHHHHHHhhhc-------------------------------------
Confidence 6799999997 46 89999999999999999999998765320
Q ss_pred CCCCCCchH--HHHHHHHhcceEecCCCEEEeCCceEEEeecCCccccceEEEEEeCCe--eEEEecCCCCCCC-CCCCC
Q 008169 81 ELGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKG--NIAYISGSNFASG-HAMDF 155 (575)
Q Consensus 81 ~~~~~~~ly--~dv~~~~~~i~~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~~--~I~YtgD~s~~~~-~~~~~ 155 (575)
.+.+.| +|++.++.++++++|++++++.++++++++++||++||++|.|+.++. +|+||||+..... +....
T Consensus 303 ---~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~ggi~v~~~~~gH~~Gs~~~~i~~~~~~~~ilftGD~~~~~~~ll~~~ 379 (651)
T 3af5_A 303 ---GQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKFIPTRLLEPA 379 (651)
T ss_dssp ---TCCCSSCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEECSSSTTCEEEEEEETTTTTCEEECCSCCCSCCSSCCCC
T ss_pred ---ccCCCCCHHHHHHhhhcEEEeCCCCEEEecCCEEEEEecCCCCcCcEEEEEEECCCceEEEEeCCCCCCcccccccc
Confidence 013456 788899999999999999999556999999999999999999999887 9999999876532 22222
Q ss_pred CCCCCCCCcEEEEcCCCCCCCCccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHHHhcCCeEEEecCC
Q 008169 156 DYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINR 235 (575)
Q Consensus 156 d~~~l~~~DvLI~e~~st~~~~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~tl~~GG~VLIP~fa 235 (575)
+. .+.++|+||+| +||+...+ .+.++ .+..++|++.|.+++++||+||||+||
T Consensus 380 ~~-~~~~~DvLI~E--sT~~~~~~----------------------~h~s~--~~~~~~l~~~i~~~l~~~g~vlIp~fa 432 (651)
T 3af5_A 380 NA-KFPRLETLVME--STYGGAND----------------------IQMPR--EEAEKRLIEVIHNTIKRGGKVLIPAMA 432 (651)
T ss_dssp CC-BCSSCSEEEEE--CTTCSTTC----------------------CCCCH--HHHHHHHHHHHHHHHHTTCEEEEECCT
T ss_pred cc-cCCCCCEEEEC--CCCCCCCC----------------------CCCCH--HHHHHHHHHHHHHHHhCCCEEEEeccC
Confidence 11 34689999999 56641100 01222 234466999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhCCCcccEEEECchHHHHHHHHHHhHHhhhHHHHHhhc-cCCCCCcchhhhhcccccccCCCCC
Q 008169 236 VGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLF-SGDPLFAHVKLIKEKKIHVFPAVHS 314 (575)
Q Consensus 236 ~GR~qELl~~L~~~~~~~~l~vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~-~~e~pF~~~~l~~~~~l~~~~~i~~ 314 (575)
+||+|||+++|.++|+++.+++|||++| ++.+++++|..+.+||++..++..+ .+++||.+..+ ....+...
T Consensus 433 vgR~qell~~l~~~~~~~~l~~~I~~dg-~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~------~~v~~~~~ 505 (651)
T 3af5_A 433 VGRAQEVMMVLEEYARIGGIEVPIYLDG-MIWEATAIHTAYPEYLSRRLREQIFKEGYNPFLSEIF------HPVANSRE 505 (651)
T ss_dssp TTHHHHHHHHHHHHHTTTCCCSCEEEES-SHHHHHHHHHTCGGGSCHHHHHHTTTSSCCSTTCTTE------EECCSHHH
T ss_pred ccHHHHHHHHHHHhhhhcCCCCcEEEec-hHHHHHHHHHHhHHhcCHHHHHHHHhccCCCccCCce------EEcCCHHH
Confidence 9999999999999999888889999986 9999999999999999998776664 45788865432 12221100
Q ss_pred hhhhhccCCCEEEEecCCCCCcchHHHHHHHHhCCCCCcEEecCccchhhc----------------cCC--CceeeeEE
Q 008169 315 PKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELA----------------VLP--FKPISMKV 376 (575)
Q Consensus 315 ~~~~~~~~~P~VV~as~gml~~G~s~~~l~~~~~d~~N~Iil~g~~~~~~~----------------l~~--~~~v~~~v 376 (575)
.+.+...++||||||++|||++|+++++|++|++||+|+|||+||+.++.. .+. .++++|+|
T Consensus 506 ~~~~~~~~~~~vIia~~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~gt~gr~l~~g~~~i~~~~~~G~~~~v~v~~~v 585 (651)
T 3af5_A 506 RQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAEGTLGRQVQSGIREIPMVGEEGRTEVIKVNMEV 585 (651)
T ss_dssp HHHHHHSCSCEEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCCCTTCHHHHHHHTCSEEEEECGGGCEEEEECCSEE
T ss_pred HHHHhcCCCCEEEEECCCCCCCCHHHHHHHHHhCCCCCEEEEeCCCCCCcHHHHHHhccceeeehhcCCCceEEEeEEEE
Confidence 011123378999999999999999999999999999999999999877531 023 45689999
Q ss_pred EEee-cccCCChhhHHHHHhhcC--CCEEEEecCCccccccccc-----CCceeeecCCCcEEEe
Q 008169 377 LQCS-FLSGKKLQKVQPLLKILQ--PKLVLFPEEWRTHVSFSDV-----TSFSVSHYSENETIHI 433 (575)
Q Consensus 377 ~~~~-fsaHaD~~~l~~~i~~~~--P~~vilvHGe~~~~~~l~~-----~~~~v~~p~~~e~i~l 433 (575)
..++ ||+|||+++|++|++.++ |++||+||||...+..+++ .|+++++|++||++++
T Consensus 586 ~~i~g~SgHad~~eL~~~i~~~~~~P~~vi~vHGe~~~~~~la~~~~~~~g~~~~~p~~g~~~~l 650 (651)
T 3af5_A 586 HTIDGFSGHADRRELMNYVAKVRPRPERIITVHGEPQKCLDLATSIHRKFGISTRAPNNLDTIRL 650 (651)
T ss_dssp EECGGGCSSCCHHHHHHHHHHCBSCCSEEEEESSCHHHHHHHHHHHHHHHCCEEECCCTTCEEEC
T ss_pred EEcCcccCcCCHHHHHHHHHHhhcCCCEEEEEcCCHHHHHHHHHHHHHhcCCeEEECCCCCEEEe
Confidence 9997 999999999999999998 9999999999998877762 4889999999999986
No 4
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=100.00 E-value=2.7e-48 Score=437.72 Aligned_cols=357 Identities=13% Similarity=0.205 Sum_probs=274.2
Q ss_pred cccccchhccccCCcceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhHhhhhccCCCCC
Q 008169 2 GMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSE 81 (575)
Q Consensus 2 ~~~aLP~l~~~~gf~g~IY~T~pT~~l~~llL~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 81 (575)
|+++||+|.+. +|+++||||.+|.++.+.++.|+.++++.. +
T Consensus 250 HiGgl~~L~~~-~~~~~Iy~t~~t~~ll~~~l~d~~~~~~~~-----------------------------------g-- 291 (640)
T 2xr1_A 250 HQGLVPLLFKY-GYEGPVYCTPPTRDLMVLLQLDYIDVAAKE-----------------------------------G-- 291 (640)
T ss_dssp HHTTHHHHHHT-TCCSCEEECHHHHHHHHHHHHHHHHHHHHH-----------------------------------T--
T ss_pred hhccHHHHHhc-CCCCeEEECHHHHHHHHHHHHHHHHHhhhc-----------------------------------c--
Confidence 57999999973 789999999999999999999998765320 1
Q ss_pred CCCCCchH--HHHHHHHhcceEecCCCEEEeCCceEEEeecCCccccceEEEEEeCCe--eEEEecCCCCCC-CCCCCCC
Q 008169 82 LGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKG--NIAYISGSNFAS-GHAMDFD 156 (575)
Q Consensus 82 ~~~~~~ly--~dv~~~~~~i~~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~~--~I~YtgD~s~~~-~~~~~~d 156 (575)
+.+.| +|++.++.+++.++|++++++.++++++++++||++||++|.++.++. +|+||||+.... .+....+
T Consensus 292 ---~~~~~~~~~~~~~~~~~~~l~~g~~i~l~gg~~v~~~~~GH~~Gs~~~~i~~~~~~~~ilftGD~~~~~~~ll~~~~ 368 (640)
T 2xr1_A 292 ---KKIPYESGMVAKTLKHTIPLDYEEVTDIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVVFTGDYKYEKTRLFDPAV 368 (640)
T ss_dssp ---CCCCSCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEECSSSTTCEEEEEEETTTTEEEEECCSCCSSCCSSCCCCC
T ss_pred ---cCCCCCHHHHHHHHhceEEeCCCCEEEecCCEEEEEEcCCCCcCcEEEEEEECCceEEEEEECCCCCCCcccccccc
Confidence 12456 788999999999999999999556999999999999999999999887 999999987642 2222221
Q ss_pred CCCCCCCcEEEEcCCCCCCCCccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHHHhcCCeEEEecCCh
Q 008169 157 YRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRV 236 (575)
Q Consensus 157 ~~~l~~~DvLI~e~~st~~~~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~tl~~GG~VLIP~fa~ 236 (575)
. ...++|+||+| +|++.. +. .+.++ .+..++|++.|.+++++||+||||+|++
T Consensus 369 ~-~~~~~DvLi~E--sT~g~~----------~~------------~h~s~--~~~~~~l~~~i~~~~~~~g~vlIp~fav 421 (640)
T 2xr1_A 369 N-KFPRVETVISE--ATYGNA----------NA------------FQPAL--KDAEKHLQMVVKNTIERGGIAVIPAFAV 421 (640)
T ss_dssp C-BCSCCSEEEEE--CTTCST----------TC------------CCCCH--HHHHHHHHHHC--------CEEEECCTT
T ss_pred c-cCCCCcEEEEC--CCCCCC----------cc------------CCCCH--HHHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 1 34589999999 566410 00 01212 2344678999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCc-ccEEEECchHHHHHHHHHHhHHhhhHHHHHhhc-cCCCCCcchhhhhcccccccCCCCC
Q 008169 237 GVFLQLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLF-SGDPLFAHVKLIKEKKIHVFPAVHS 314 (575)
Q Consensus 237 GR~qELl~~L~~~~~~~~l~-vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~-~~e~pF~~~~l~~~~~l~~~~~i~~ 314 (575)
||+||+++.|.++|+++.++ +|||++| ++.+++++|..+.+||++..++..+ .+++||.+..+ ...++...
T Consensus 422 GR~qell~~l~~~~~~~~~~~~~V~~dg-~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~------~~~~~~~~ 494 (640)
T 2xr1_A 422 GRSQEVMIVLEESIRKGLIPEVPVYLDG-MIWEATAIHATHPEYLNNDLRKLIFQKGQNPFLSECF------KPVDSHEA 494 (640)
T ss_dssp THHHHHHHHHHHHHHHTSSCCCCEEEES-SHHHHHHHHHHCGGGSCHHHHHHC------CTTCTTE------EEEC-CHH
T ss_pred chHHHHHHHHHHHHHhCCCCCCcEEEEh-HHHHHHHHHHHhHhhhcHHHHHHHHhcccCcccCCce------EEeCCHHH
Confidence 99999999999999988887 9999987 9999999999999999998776664 45778865432 11221110
Q ss_pred hhhhhccCCCEEEEecCCCCCcchHHHHHHHHhCCCCCcEEecCccchhhc-------------c---CC--CceeeeEE
Q 008169 315 PKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELA-------------V---LP--FKPISMKV 376 (575)
Q Consensus 315 ~~~~~~~~~P~VV~as~gml~~G~s~~~l~~~~~d~~N~Iil~g~~~~~~~-------------l---~~--~~~v~~~v 376 (575)
...++..++||||||++|||++|+++++|++|++||+|+|||+||+.++.. + +. .++++|+|
T Consensus 495 ~~~~~~~~~~~vIiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~gt~gr~l~~g~~~i~~~~~~G~~~~v~v~~~v 574 (640)
T 2xr1_A 495 RQKIIQNPQPCVILATSGMMNGGPVMEYFKAFAEDPRNTLVFVGYQADGTIGRRIQKGWKEIPMTGKNGSTEMLKMNMEV 574 (640)
T ss_dssp HHHC----CCCEEEESCTTSSSSHHHHHHHHHSSCTTCEEEECSCCCTTCHHHHHHTTCCC-----------CCCCCSEE
T ss_pred HHHHhcCCCCeEEEeCCCccCCChHHHHHHHhhCCCCCEEEEecCCCCCCHHHHHhhccceeeeeccCCCceEEeeeEEE
Confidence 011112378999999999999999999999999999999999999877531 0 23 55689999
Q ss_pred EEee-cccCCChhhHHHHHhhcC--CCEEEEecCCcccccccc-----cCCceeeecCCCcEEEe
Q 008169 377 LQCS-FLSGKKLQKVQPLLKILQ--PKLVLFPEEWRTHVSFSD-----VTSFSVSHYSENETIHI 433 (575)
Q Consensus 377 ~~~~-fsaHaD~~~l~~~i~~~~--P~~vilvHGe~~~~~~l~-----~~~~~v~~p~~~e~i~l 433 (575)
..++ ||+|||+++|++|++.++ |++|++||||...+..++ +.|+++++|++||++++
T Consensus 575 ~~i~g~SgHad~~eL~~~i~~~~~~P~~vi~vHGe~~~~~~~a~~~~~~~g~~~~~p~~g~~~~l 639 (640)
T 2xr1_A 575 QVVDGFSGHSDRRQLMEYVKRMQPRPERVFTEHGDEKACVDLASSVYKKLKIETRALTNLETVRL 639 (640)
T ss_dssp EECCCCSCSCCHHHHHHHHHTCBSCCSEEEEESSCHHHHHHHHHHHHHHHCCEEEECCTTCEEEC
T ss_pred EEEccccccCCHHHHHHHHHHhccCCCEEEEECCCHHHHHHHHHHHHHHcCCeEEeCCCCCEEEe
Confidence 9997 999999999999999998 999999999999987776 24899999999999986
No 5
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=6.8e-48 Score=434.67 Aligned_cols=356 Identities=17% Similarity=0.212 Sum_probs=285.8
Q ss_pred cccccchhccccCCcceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhHhhhhccCCCCC
Q 008169 2 GMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSE 81 (575)
Q Consensus 2 ~~~aLP~l~~~~gf~g~IY~T~pT~~l~~llL~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 81 (575)
|++|||+|.+. +|+++||||++|.++.+.++.|+.++++.. +
T Consensus 247 HiGglp~L~~~-~~~~~Iy~t~~t~~l~~~~l~d~~~~~~~~-----------------------------------~-- 288 (636)
T 2ycb_A 247 HSGFLPYLYHY-GYDGPVYCTAPTRDLMTLLQLDHIDIAHRE-----------------------------------D-- 288 (636)
T ss_dssp HHTTHHHHHHT-TCCSCEEECHHHHHHHHHHHHHHHHHHHHH-----------------------------------T--
T ss_pred HhcCHHHHHhc-CCCCeEEEcchHHHHHHHHHHHHHHhhhhc-----------------------------------C--
Confidence 67999999973 789999999999999999999988765320 0
Q ss_pred CCCCCchH--HHHHHHHhcceEecCCCEEEeCCceEEEeecCCccccceEEEEEeCCe--eEEEecCCCCCC-CCCCCCC
Q 008169 82 LGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKG--NIAYISGSNFAS-GHAMDFD 156 (575)
Q Consensus 82 ~~~~~~ly--~dv~~~~~~i~~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~~--~I~YtgD~s~~~-~~~~~~d 156 (575)
+.+.| +|++.++.+++.++|++++++.++++++++++||++||++|.|+.++. +|+||||+.... .+....+
T Consensus 289 ---~~~~~~~~~i~~~~~~~~~l~~g~~~~l~ggi~v~~~~~gH~~Gs~~~~i~~~~~~~~ilftGD~~~~~~~ll~~~~ 365 (636)
T 2ycb_A 289 ---EPLPFNVKHVKKSVKHTITLDYGEVTDIAPDIRLTLHNAGHILGSAMAHLHIGDGQHNMVYTGDFKYEQSRLLEAAA 365 (636)
T ss_dssp ---CCCSCCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEECCSSTTCEEEEEEETTTTTCEEECCSCCSSCCSSSCCCC
T ss_pred ---CCCCCCHHHHHHHHhceEEeCCCCEEEecCCeEEEEeCCCCCCCcEEEEEEECCCeEEEEEECCCCCCcccccCCcc
Confidence 12445 789999999999999999999557999999999999999999999887 999999987643 2222221
Q ss_pred CCCCCCCcEEEEcCCCCCCCCccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHHHhcCCeEEEecCCh
Q 008169 157 YRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRV 236 (575)
Q Consensus 157 ~~~l~~~DvLI~e~~st~~~~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~tl~~GG~VLIP~fa~ 236 (575)
. .+.++|+||+| +|++.. . + .+.++ .+..++|.+.+.+++++||+||||+|++
T Consensus 366 ~-~~~~~D~LI~E--sT~~~~----------~----------~--~h~s~--~~~~~~l~~~i~~~~~~~g~vlIp~fa~ 418 (636)
T 2ycb_A 366 N-RFPRIETLVME--STYGGH----------E----------D--VQPSR--NRAEKELVKTIYSTLRRGGKILIPVFAV 418 (636)
T ss_dssp C-CCSCCSEEEEE--CTTCSG----------G----------G--CCCCH--HHHHHHHHHHHHHHHHHTCCEEEECCTT
T ss_pred c-CCCCCeEEEEC--CCCCCC----------C----------C--CCCCH--HHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 1 34689999999 566410 0 0 01112 2234668899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCc-ccEEEECchHHHHHHHHHHhHHhhhHHHHHhhc-cCCCCCcchhhhhcccccccCCCCC
Q 008169 237 GVFLQLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLF-SGDPLFAHVKLIKEKKIHVFPAVHS 314 (575)
Q Consensus 237 GR~qELl~~L~~~~~~~~l~-vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~-~~e~pF~~~~l~~~~~l~~~~~i~~ 314 (575)
||+|||+++|.++|+++.++ +|||++| ++.+++++|..+.+||++..++..+ .+++||.+..+. ...+...
T Consensus 419 GR~qell~~l~~~~~~~~~~~~~V~~dg-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~~------~~~~~~~ 491 (636)
T 2ycb_A 419 GRAQELMIVLEEYIRTGIIDEVPVYIDG-MIWEANAIHTARPEYLSKDLRDQIFHMGHNPFISDIFH------KVNGMDE 491 (636)
T ss_dssp THHHHHHHHHHHHHHTTSSCCCCEEEEH-HHHHHHHHHHHSGGGSCHHHHHHHHTTCCCGGGCTTEE------EECCHHH
T ss_pred cHHHHHHHHHHHHHHhCCCCCCeEEEeh-HHHHHHHHHHHhHHhhCHHHHHHHHhccCCcccCCceE------EeCCHHH
Confidence 99999999999999988777 9999885 9999999999999999998776664 457788554331 1111101
Q ss_pred hhhhhccCCCEEEEecCCCCCcchHHHHHHHHhCCCCCcEEecCccchhhc-------------c---CC--CceeeeEE
Q 008169 315 PKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELA-------------V---LP--FKPISMKV 376 (575)
Q Consensus 315 ~~~~~~~~~P~VV~as~gml~~G~s~~~l~~~~~d~~N~Iil~g~~~~~~~-------------l---~~--~~~v~~~v 376 (575)
.+.+. .++||||||++|||++|+++++|++|++||+|+|||+||+.++.. + +. .++++|+|
T Consensus 492 ~~~l~-~~~~~vIiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~Gt~gr~l~~g~~~i~~~~~~G~~~~v~v~~~v 570 (636)
T 2ycb_A 492 RREIV-EGEPSIILSTSGMLTGGNSLEYFKWLCEDPDNSLVFVGYQAEGSLGRRIQKGWKEIPLKDEDDKMRVYNVRMNI 570 (636)
T ss_dssp HHHHH-HSSSCEEEESCSSSSSHHHHHHHHHHTTCTTSEEEECSCCCSSSHHHHHHTTCCEEEEECSSSCEEEEECCSEE
T ss_pred HHHhc-cCCCEEEEecCCccCCChHHHHHHHHhCCCCCEEEEecCCCCCCHHHHhhcCCceeeeeccCCceeEEEeEEEE
Confidence 11121 378999999999999999999999999999999999999877530 0 23 45689999
Q ss_pred EEee-cccCCChhhHHHHHhhcC--CCEEEEecCCccccccccc-----CCceeeecCCCcEEEe
Q 008169 377 LQCS-FLSGKKLQKVQPLLKILQ--PKLVLFPEEWRTHVSFSDV-----TSFSVSHYSENETIHI 433 (575)
Q Consensus 377 ~~~~-fsaHaD~~~l~~~i~~~~--P~~vilvHGe~~~~~~l~~-----~~~~v~~p~~~e~i~l 433 (575)
..++ ||+|||+++|++|++.++ |++||+||||...+..+++ .|+++++|++||++++
T Consensus 571 ~~i~~~SgHad~~eL~~~i~~~~~~Pk~vi~vHGe~~~~~~~a~~~~~~~g~~~~~p~~g~~~~l 635 (636)
T 2ycb_A 571 KTIEGFSGHSDRRQLMEYVKRISPKPEKILLCHGDNYKTLDLASSIYRTYRIETKTPLNLETVRI 635 (636)
T ss_dssp EECCSCCSSCCHHHHHHHHHSCSSCCSEEEEESSCHHHHHHHHHHHHHHHCCEEECCCTTCEEEC
T ss_pred EEECCcceeCCHHHHHHHHHHhccCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEeCCCCCEEEe
Confidence 9998 999999999999999998 9999999999998877762 4889999999999986
No 6
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10
Probab=100.00 E-value=1.5e-40 Score=377.56 Aligned_cols=278 Identities=15% Similarity=0.219 Sum_probs=215.0
Q ss_pred cccccchhccccC----CcceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhHhhhhccC
Q 008169 2 GMLGLPFLTRMEG----FSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGE 77 (575)
Q Consensus 2 ~~~aLP~l~~~~g----f~g~IY~T~pT~~l~~llL~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 77 (575)
|+||||+|.++++ +++|||||+||+++++.+|+|+++.+.. .
T Consensus 66 HiGgLp~L~~~~~~g~~~~~pIY~t~~t~~l~~~~l~d~~~~~~~-------~--------------------------- 111 (717)
T 2i7x_A 66 CLGAHSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGV-------I--------------------------- 111 (717)
T ss_dssp HHTTHHHHHHHSHHHHHHTCEEEEEHHHHHHHHHHHHHHHHHTTS-------S---------------------------
T ss_pred HHCCHHHHHHhhhhcccCCceEEecchhHHHHHHHHHHHHHhhcc-------c---------------------------
Confidence 6899999997532 3799999999999999999998765310 0
Q ss_pred CCCCCCCC-CchH--HHHHHHHhcceEecCCCEEEe---CCceEEEeecCCccccceEEEEEeCCeeEEEecCCCCC-CC
Q 008169 78 DGSELGGG-CPCI--AHVKDCISKVQTLRFGEEACY---NGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFA-SG 150 (575)
Q Consensus 78 ~~~~~~~~-~~ly--~dv~~~~~~i~~v~y~q~~~l---~g~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s~~-~~ 150 (575)
. .+ .++| ++++.++.++++++|++++.+ .++++|+++++||++||++|.|+.++.+|+||||+... ..
T Consensus 112 --~---~~~~~~~~~~~v~~~~~~i~~l~~ge~i~l~~~~ggi~V~~~~aGHs~Gs~~~~I~~~~~~IvytGD~~~~~~~ 186 (717)
T 2i7x_A 112 --G---PYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDN 186 (717)
T ss_dssp --S---SBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSSTTCEEEEEECSSCEEEECSSCCSSCCS
T ss_pred --c---ccccccccHHHHHhhhhceEEecCCCEEEEeecCCCEEEEEECCCCCCCcEEEEEEeCCCEEEEECCCCCCccc
Confidence 0 01 1456 789999999999999999999 36799999999999999999999999999999998864 33
Q ss_pred CCCCCCC--------CCCCCCcEEEEcCCCCCCCCccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHH
Q 008169 151 HAMDFDY--------RAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDS 222 (575)
Q Consensus 151 ~~~~~d~--------~~l~~~DvLI~e~~st~~~~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~t 222 (575)
+..+++. ..+.++|+||+| +|++ .+.+..+ +++++|++.|.++
T Consensus 187 ~l~~~~~L~~~g~~l~~l~~~D~LI~E--sTy~------------------------~~~h~~~---~~~~~l~~~i~~~ 237 (717)
T 2i7x_A 187 ILNAASILDATGKPLSTLMRPSAIITT--LDRF------------------------GSSQPFK---KRSKIFKDTLKKG 237 (717)
T ss_dssp SCCCCTTBCTTSCBCSTTSSCSEEEEC--CSCC------------------------CCSSCHH---HHHHHHHHHHHHH
T ss_pred ccCccccccccchhHHhccCCcEEEEc--CCCC------------------------CCCCCCH---HHHHHHHHHHHHH
Confidence 3332222 235689999999 5553 1112211 2456799999999
Q ss_pred HhcCCeEEEecCChhHHHHHHHHHHHHH-H---hCCCc-ccEEEECchHHHHHHHHHHhHHhhhHHHHHhhccC-C--CC
Q 008169 223 VKAGGSVLIPINRVGVFLQLLEQIAIFM-E---CSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSG-D--PL 294 (575)
Q Consensus 223 l~~GG~VLIP~fa~GR~qELl~~L~~~~-~---~~~l~-vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~-e--~p 294 (575)
+++||+||||+|++||+|||+++|.++| + ++.++ +|||++|+++.+++++|+.+.+||++..++ .|.. + .|
T Consensus 238 l~~~G~VlIp~fa~gR~qell~~l~~~~~~~~~~~~~~~~pI~l~g~~a~~~~~i~~~~~e~l~~~~~~-~~~~~~~~~p 316 (717)
T 2i7x_A 238 LSSDGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLK-TWENRNNTSP 316 (717)
T ss_dssp TSTTCEEEEEECTTTHHHHHHHHHHHHHTTC-------CCCEEEECTTTTHHHHHHHTCGGGSCHHHHH-HHHSSSSCCT
T ss_pred HhCCCeEEEEeccchHHHHHHHHHHHhhhhhhccccCCCceEEEECHHHHHHHHHHHHHHHHhChHHHH-HHhcccccCC
Confidence 9999999999999999999999999998 2 33455 999999999999999999999999988754 4432 3 47
Q ss_pred Ccc-hhhhhcccccccCCCCChhhhhccCCCEEEEecCCCCCcchHHHHHHHHhCCCCCcEEecCccc
Q 008169 295 FAH-VKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVD 361 (575)
Q Consensus 295 F~~-~~l~~~~~l~~~~~i~~~~~~~~~~~P~VV~as~gml~~G~s~~~l~~~~~d~~N~Iil~g~~~ 361 (575)
|.| ..+ .+ . +.+.++..++||||+||+ ++|+++++|++|++||+|+|||+||+.
T Consensus 317 f~~~~~l------~~-~---~~~~l~~~~~p~VI~aSG---~gG~~~~~L~~~a~~~~n~VIf~g~~~ 371 (717)
T 2i7x_A 317 FEIGSRI------KI-I---APNELSKYPGSKICFVSE---VGALINEVIIKVGNSEKTTLILTKPSF 371 (717)
T ss_dssp TCCTTTE------EE-C---CGGGGGGCCSCEEEEEES---CHHHHHHHHHHHSSCTTEEEEECSSCC
T ss_pred ccccccC------cc-C---CHHHHhhCCCCEEEEECC---CCHHHHHHHHHHcCCCcCEEEEEcCCC
Confidence 762 211 11 1 124456667899888865 899999999999999999999987544
No 7
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=99.97 E-value=2.8e-30 Score=286.11 Aligned_cols=312 Identities=11% Similarity=0.116 Sum_probs=230.5
Q ss_pred cccccchhccccCCcceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhHhhhhccCCCCC
Q 008169 2 GMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSE 81 (575)
Q Consensus 2 ~~~aLP~l~~~~gf~g~IY~T~pT~~l~~llL~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 81 (575)
|++|||+|.+. |++|||||++|+++.+..+.+... .
T Consensus 79 Higgl~~l~~~--~~~pIy~t~~t~~ll~~~l~~~~~-----------------------------------------~- 114 (555)
T 3zq4_A 79 HIGGIPYLLRQ--VNIPVYGGKLAIGLLRNKLEEHGL-----------------------------------------L- 114 (555)
T ss_dssp HHTTHHHHHTT--CCCCEEECHHHHHHHHHHHHHHST-----------------------------------------T-
T ss_pred hhCCHHHHHHh--cCceEEECHHHHHHHHHHHHHcCc-----------------------------------------c-
Confidence 68999999974 789999999999988876654210 0
Q ss_pred CCCCCchHHHHHHHHhcceEecCCCEEEeCCceEEEeecCCc-cccceEEEEEeCCeeEEEecCCCCCCCCCC-CCCCCC
Q 008169 82 LGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGL-DIGACNWIISGAKGNIAYISGSNFASGHAM-DFDYRA 159 (575)
Q Consensus 82 ~~~~~~ly~dv~~~~~~i~~v~y~q~~~l~g~i~it~~~AGH-iLGsa~~~I~~~~~~I~YtgD~s~~~~~~~-~~d~~~ 159 (575)
+ -.+++.+++++++.+. ++++++++++| +.||++|.|+.++.+|+||||+........ ..|...
T Consensus 115 -----~--------~~~~~~v~~g~~~~ig-~~~v~~~~~~H~~pgs~~~~i~~~~~~il~tGD~~~~~~~~~g~~d~~~ 180 (555)
T 3zq4_A 115 -----R--------QTKLNIIGEDDIVKFR-KTAVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTK 180 (555)
T ss_dssp -----T--------TCCEEECCTTCCEEET-TEEEEEEEEBCSSSSEEEEEEEETTEEEEECCSCBCCSSCSSSCCCHHH
T ss_pred -----C--------CCceEEeCCCCEEEEC-CEEEEEEeCCCCCcCcEEEEEEECCcEEEEeCCCCCCCCcCcCccCHHH
Confidence 0 0145788999999996 69999999999 999999999999999999999886432111 233333
Q ss_pred C-----CCCcEEEEcCCCCCCCCccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHHHhc-CCeEEEec
Q 008169 160 I-----QGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKA-GGSVLIPI 233 (575)
Q Consensus 160 l-----~~~DvLI~e~~st~~~~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~tl~~-GG~VLIP~ 233 (575)
+ .++|+||+| +|+.. .+. + ...+ .++.+.+.+++++ +|+|+||+
T Consensus 181 l~~l~~~~~d~Li~e--sT~~~------------~~~------~------~~se----~~v~~~i~~~~~~~~grvii~~ 230 (555)
T 3zq4_A 181 MAEIGKEGVLCLLSD--STNSE------------NPE------F------TMSE----RRVGESIHDIFRKVDGRIIFAT 230 (555)
T ss_dssp HHHHHHTCEEEEEEE--CTTTT------------CCS------C------CCCH----HHHHHHHHHHHHHCCSCEEEEC
T ss_pred HHHhcccCCcEEEec--CcccC------------CCC------C------CCCH----HHHHHHHHHHHHhCCCEEEEEE
Confidence 3 479999999 56641 000 0 0112 2366678888876 99999999
Q ss_pred CC--hhHHHHHHHHHHHHHHhCCCcccEEEECchHHHHHHHHHHhHHhhhHHHHHhhccCCCCCcchhhhhcccccccCC
Q 008169 234 NR--VGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPA 311 (575)
Q Consensus 234 fa--~GR~qELl~~L~~~~~~~~l~vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~e~pF~~~~l~~~~~l~~~~~ 311 (575)
|| +||+||++..+.++ ..+||++++...+++++++.+ .|+. ++...++.
T Consensus 231 fasnv~R~q~il~~a~~~------gr~v~v~grs~~~~~~~~~~~-g~l~-------------~p~~~~v~--------- 281 (555)
T 3zq4_A 231 FASNIHRLQQVIEAAVQN------GRKVAVFGRSMESAIEIGQTL-GYIN-------------CPKNTFIE--------- 281 (555)
T ss_dssp CTTCHHHHHHHHHHHHTT------TCEEEEESHHHHHHHHHHHGG-GSCC-------------CCGGGEEC---------
T ss_pred ChhHHHHHHHHHHHHHHH------CCEEEEeCHHHHHHHHHHHHc-CCcc-------------CCcccEeC---------
Confidence 99 99999999998654 369999998888888887654 2321 11111111
Q ss_pred CCChhhhhc-cCCCEEEEecCCCCCcchHHHHHHHHhCCCCC--------cEEecCccchhhc------cCCCceeeeEE
Q 008169 312 VHSPKLLMN-WQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNS--------LLVLENEVDAELA------VLPFKPISMKV 376 (575)
Q Consensus 312 i~~~~~~~~-~~~P~VV~as~gml~~G~s~~~l~~~~~d~~N--------~Iil~g~~~~~~~------l~~~~~v~~~v 376 (575)
.+..+. .+++.||++|++ .|..+++|.+|++++.| +|||+++..++.. +.......++|
T Consensus 282 ---~~~~~~~~~~~~vii~tgs---qGe~~~~L~r~a~~~~~~~~~~~~d~vi~s~~~ipGne~~~~~~~~~l~~~g~~v 355 (555)
T 3zq4_A 282 ---HNEINRMPANKVTILCTGS---QGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEV 355 (555)
T ss_dssp ---GGGTTTSCGGGEEEEECCT---TCCTTSHHHHHHSSCCSSCCCCTTCEEEECSCCCTTCHHHHHHHHHHHHHTTCEE
T ss_pred ---HHHHhhCCCCCEEEEeCCC---CchHHHHHHHHhcCCCCccccCCCCEEEEECCCCCCcHHHHHHHHHHHHHCCCEE
Confidence 012222 245788888876 68889999999999888 9999998655421 11223455677
Q ss_pred EE-----eecccCCChhhHHHHHhhcCCCEEEEecCCcccccccc----cCCc---eeeecCCCcEEEeCCC
Q 008169 377 LQ-----CSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSD----VTSF---SVSHYSENETIHIPSL 436 (575)
Q Consensus 377 ~~-----~~fsaHaD~~~l~~~i~~~~P~~vilvHGe~~~~~~l~----~~~~---~v~~p~~~e~i~l~~~ 436 (575)
.+ +.+|+|||+++|..|++.++|+.++.||||...+..++ +.|+ +++.|++|+.+++...
T Consensus 356 ~~~~~~~~h~SgHa~~~eL~~~~~~~~Pk~~ipvHGe~~~~~~~~~~a~~~G~~~~~~~~~~nG~~~~l~~~ 427 (555)
T 3zq4_A 356 IHGPLNDIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHVKLATDCGIPEENCFIMDNGEVLALKGD 427 (555)
T ss_dssp ECSSSSCCCCCSSCCHHHHHHHHHHSCEEEEEEESBCHHHHHHHHHHHHHTTCCGGGBCCCCTTCEEEEETT
T ss_pred EecCCcceEEeCCCCHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCcccEEEccCCCEEEEeCC
Confidence 54 79999999999999999999999999999988776665 4676 6899999999999653
No 8
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=99.96 E-value=2.1e-28 Score=271.97 Aligned_cols=315 Identities=11% Similarity=0.092 Sum_probs=218.1
Q ss_pred cccccchhccccCC----cceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhHhhhhccC
Q 008169 2 GMLGLPFLTRMEGF----SAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGE 77 (575)
Q Consensus 2 ~~~aLP~l~~~~gf----~g~IY~T~pT~~l~~llL~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 77 (575)
|++|||+|.+. .+ ++|||||.+|.++.+.++.+.
T Consensus 87 Higgl~~L~~~-~~~~~~~~pIy~~~~t~~~l~~~l~~~----------------------------------------- 124 (562)
T 3bk2_A 87 HIGGLPFLLPM-IFGKESPVPIYGARLTLGLLRGKLEEF----------------------------------------- 124 (562)
T ss_dssp HHTTHHHHHHH-HHCSCCCSEEEEEHHHHHHHHHHHHHT-----------------------------------------
T ss_pred HhCCHHHHHHh-hccccCCceEEeCHHHHHHHHHHHHHc-----------------------------------------
Confidence 57999999984 22 799999999999877655431
Q ss_pred CCCCCCCCCchHHHHHHHHhcceEecCCCEEEeCCceEEEeecCCc-cccceEEEEEeCCeeEEEecCCCCCCCCC--CC
Q 008169 78 DGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGL-DIGACNWIISGAKGNIAYISGSNFASGHA--MD 154 (575)
Q Consensus 78 ~~~~~~~~~~ly~dv~~~~~~i~~v~y~q~~~l~g~i~it~~~AGH-iLGsa~~~I~~~~~~I~YtgD~s~~~~~~--~~ 154 (575)
+.. + ....++.+++++++++.+++++++++++| ++||++|.|+.++.+|+||||+....... ..
T Consensus 125 -~~~-----~-------~~~~~~~v~~g~~~~lg~~~~v~~~~~~H~~~gs~~~~i~~~~~~il~tGD~~~~~~~~~g~~ 191 (562)
T 3bk2_A 125 -GLR-----P-------GAFNLKEISPDDRIQVGRYFTLDLFRMTHSIPDNSGVVIRTPIGTIVHTGDFKLDPTPIDGKV 191 (562)
T ss_dssp -TCC-----S-------TTSEEEEECTTCEEEETTTEEEEEEECCCSSSSCEEEEEEETTEEEEECCSCCCCSSCTTSCC
T ss_pred -CCC-----c-------CCceEEEECCCCEEEeCCCEEEEEEECCCCCcccEEEEEEECCeEEEEcCCCCCCCCCCCCCc
Confidence 000 0 01245788999999997559999999999 89999999999999999999987642211 11
Q ss_pred CCCCCC-----CCCcEEEEcCCCCCCCCccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHHHh-cCCe
Q 008169 155 FDYRAI-----QGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVK-AGGS 228 (575)
Q Consensus 155 ~d~~~l-----~~~DvLI~e~~st~~~~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~tl~-~GG~ 228 (575)
.|...+ .++|+||+| +|+... ..+. . .+ ..+.+.+.++++ .+|+
T Consensus 192 ~d~~~l~~~~~~~~d~Li~E--sT~~~~---------~g~~-------------~--~e----~~v~~~l~~~~~~~~gr 241 (562)
T 3bk2_A 192 SHLAKVAQAGAEGVLLLIAD--ATNAER---------PGYT-------------P--SE----MEIAKELDRVIGRAPGR 241 (562)
T ss_dssp CCCHHHHHHHHHCCSEEEEE--CTTTTC---------CSCC-------------C--CH----HHHHHHHHHHHHHCSSC
T ss_pred ccHHHHHHhhccCCCEEEec--ccCCCC---------CCCC-------------C--hH----HHHHHHHHHHHHhCCCE
Confidence 222211 479999999 555310 0000 0 11 124445556664 6899
Q ss_pred EEEecCC--hhHHHHHHHHHHHHHHhCCCcccEEEECchHHHHHHHHHHhHHhhhHHHHHhhccCCCCCcchhhhhcccc
Q 008169 229 VLIPINR--VGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKI 306 (575)
Q Consensus 229 VLIP~fa--~GR~qELl~~L~~~~~~~~l~vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~e~pF~~~~l~~~~~l 306 (575)
|+||+|+ +||+||++..+.++ ..|||+.+.-..+++++++.. +|++. +++|-.
T Consensus 242 vii~~fas~~~r~q~il~~a~~~------~r~V~v~g~s~~~~~~~~~~~-g~l~~---------~~~~i~--------- 296 (562)
T 3bk2_A 242 VFVTTFASHIHRIQSVIWAAEKY------GRKVAMEGRSMLKFSRIALEL-GYLKV---------KDRLYT--------- 296 (562)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHT------TCEEEEECHHHHHHHHHHHHT-TSCCC---------SSCCBC---------
T ss_pred EEEEEccccchHHHHHHHHHHHh------CCEEEEEChHHHHHHHHHHhc-CcccC---------CCCccC---------
Confidence 9999999 99999999988654 258887444334777776632 45421 233311
Q ss_pred cccCCCCChhhhhcc-CCCEEEEecCCCCCcchHHHHHHHHhC--------CCCCcEEecCccchhhc------cCCCce
Q 008169 307 HVFPAVHSPKLLMNW-QEPCIVFSPHWSLRLGPTIHLLRRWSG--------DHNSLLVLENEVDAELA------VLPFKP 371 (575)
Q Consensus 307 ~~~~~i~~~~~~~~~-~~P~VV~as~gml~~G~s~~~l~~~~~--------d~~N~Iil~g~~~~~~~------l~~~~~ 371 (575)
.+.++.. ++++||+||++| |.....+.+|+. +|+|+|||++|+.++.. .+....
T Consensus 297 --------~~~~~~~~~~~~vi~~tg~~---ge~~~~l~ria~~~h~~~~~~~~~~vi~s~~~~~G~~~~~~~~~~~l~~ 365 (562)
T 3bk2_A 297 --------LEEVKDLPDHQVLILATGSQ---GQPMSVLHRLAFEGHAKMAIKPGDTVILSSSPIPGNEEAVNRVINRLYA 365 (562)
T ss_dssp --------TGGGTTSCGGGEEEEECCTT---SCSHHHHHHHHTTCCSSCCCCTTCEEEECSCCCTTCHHHHHHHHHHHHH
T ss_pred --------HHHHhcCCCCCEEEEEcCCC---chhHHHHHhhhhcccccccCCCCCEEEEECCCCCCCeEehhhhcCceee
Confidence 0122233 345777777553 444445777764 89999999998776531 222334
Q ss_pred eeeEEE-----EeecccCCChhhHHHHHhhcCCCEEEEecCCcccccccc----cCCc---eeeecCCCcEEEeCCCC
Q 008169 372 ISMKVL-----QCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSD----VTSF---SVSHYSENETIHIPSLK 437 (575)
Q Consensus 372 v~~~v~-----~~~fsaHaD~~~l~~~i~~~~P~~vilvHGe~~~~~~l~----~~~~---~v~~p~~~e~i~l~~~~ 437 (575)
+.++|. .+.||+|||+++|..|++.++|++||+||||...+..++ +.|+ +++.|++|++++++...
T Consensus 366 ~g~~v~~~~~~~i~~SgHa~~~eL~~~i~~~~Pk~vipvHGe~~~~~~~~~~~~~~g~~~~~~~~~~~G~~~~l~~~~ 443 (562)
T 3bk2_A 366 LGAYVLYPPTYKVHASGHASQEELKLILNLTTPRFFLPWHGEVRHQMNFKWLAESMSRPPEKTLIGENGAVYRLTRET 443 (562)
T ss_dssp TTCEEECTTTSSSCCCSSCCHHHHHHHHHHHCCSEEEEESBCHHHHHHHHHHHHTSSSCCSEECCCCTTEEEEECSSC
T ss_pred CCCEEEEccCCceEEeCCCCHHHHHHHHHhcCCCEEEEEcCCHHHHHHHHHHHHHcCCCcceEEECCCCCEEEEeCCC
Confidence 566664 457999999999999999999999999999999876654 4576 69999999999997644
No 9
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10
Probab=99.88 E-value=3.7e-22 Score=214.72 Aligned_cols=274 Identities=8% Similarity=0.038 Sum_probs=174.5
Q ss_pred hcceEecCCCEEEeCCceEEEeecCCc-cccceEEEEEeCCeeEEEecCCCCCCCCCCCC-CC-CCCCCCcEEEEcCCCC
Q 008169 97 SKVQTLRFGEEACYNGILIIKAFSSGL-DIGACNWIISGAKGNIAYISGSNFASGHAMDF-DY-RAIQGSDLILYSDLSS 173 (575)
Q Consensus 97 ~~i~~v~y~q~~~l~g~i~it~~~AGH-iLGsa~~~I~~~~~~I~YtgD~s~~~~~~~~~-d~-~~l~~~DvLI~e~~st 173 (575)
.+++.+++++++.+. +++++++++|| +.||+.+.|+.++.+++||||+........+. .. ...+++|+||+| +|
T Consensus 142 ~~~~~~~~g~~~~~g-~~~v~~~~~~H~~~gs~~~~i~~~~~~i~~tGD~~~~~~~~~~~~~~~~~~~~~d~Li~E--st 218 (429)
T 2az4_A 142 REMIGLNKNDVIKVG-EISVEIVPVDHDAYGASALLIRTPDHFITYTGDLRLHGHNREETLAFCEKAKHTELLMME--GV 218 (429)
T ss_dssp CCCEEECTTCEEEET-TEEEEEEECCCSSTTCEEEEEEETTEEEEECCSCCSSSTTHHHHHHHHHHHTTCSEEEEE--CC
T ss_pred ceEEEeCCCCeEEEC-CEEEEEEECCCCChhhEEEEEEeCCcEEEECCCcccCCCchHHHHHHHHhccCCCEEEEC--CC
Confidence 456789999999996 59999999999 89999999999999999999987532110000 00 113489999999 55
Q ss_pred CCCCccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHHHhc-CCeEEEecCC---hhHHHHHHHHHHHH
Q 008169 174 LDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKA-GGSVLIPINR---VGVFLQLLEQIAIF 249 (575)
Q Consensus 174 ~~~~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~tl~~-GG~VLIP~fa---~GR~qELl~~L~~~ 249 (575)
+....+ .+. ..+. .+ +. .+ .++.+.+.+++++ +|+++||.+. ++|+|+++
T Consensus 219 ~~~~~~-~~~---~~~~-------~~---~~--s~----~~~~~~i~~~~~~~~~rlil~h~~~~~~~r~~~~a------ 272 (429)
T 2az4_A 219 SISFPE-REP---DPAQ-------IA---VV--SE----EDLVQHLVRLELENPNRQITFNGYPANVERFAKII------ 272 (429)
T ss_dssp GGGSCC-CCC---CTTB-------CC---CC--SH----HHHHHHHHHHHHTCSSSCEEEEECTTCHHHHHHHH------
T ss_pred CcCccc-ccc---cccC-------CC---CC--CH----HHHHHHHHHHHHhCCCcEEEEEeccchHHHHHHHH------
Confidence 531000 000 0000 00 11 11 2245566666665 4569999988 78888882
Q ss_pred HHhCCCcccEEEECchHHHHHHHHHHhHHhhhHHHHHhhccCCCCCcchhhhhcccccccCCCCChhhhhccCCCEEEEe
Q 008169 250 MECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFS 329 (575)
Q Consensus 250 ~~~~~l~vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~e~pF~~~~l~~~~~l~~~~~i~~~~~~~~~~~P~VV~a 329 (575)
.+. +.|||++++++..+++++.....+ +.... ... ..+... .+.+.+.++..++++|++
T Consensus 273 -~~~--gr~v~~~g~~~~~~~~~~~~~~~~---------~~~~~-~~~-~~~~~~------~~~~~~~~~~~~~~~ii~- 331 (429)
T 2az4_A 273 -EKS--PRTVVLEANMAALLLEVFGIEVRY---------YYAES-GKI-PELNPA------LEIPYDTLLKDKTDYLWQ- 331 (429)
T ss_dssp -HHC--SSEEEEEHHHHHHHHHHHCCCCEE---------ECSSS-SCC-TTSCGG------GBCCHHHHHHCSSSEEEE-
T ss_pred -HHh--CCEEEEEChhHHHHHhhccccCee---------Eeccc-ccc-cccCcc------ceecHHHHhhCCCcEEEE-
Confidence 122 259999999998887764211111 11000 000 000000 011224455566677665
Q ss_pred cCCCCCcchHHHHHHHHhCCCCCcEEecCccchhhc-------cCCCceeeeEEEEeecccCCChhhHHHHHhhcCCCEE
Q 008169 330 PHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELA-------VLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLV 402 (575)
Q Consensus 330 s~gml~~G~s~~~l~~~~~d~~N~Iil~g~~~~~~~-------l~~~~~v~~~v~~~~fsaHaD~~~l~~~i~~~~P~~v 402 (575)
| .|+ +. ++ .++++||+.++..++.. ......+.++|..+++|+|||+++|..|++.++|+.|
T Consensus 332 ---~--~~~--~~--~l--~~~~~vi~s~~~~~g~~~~~~~~~~~~~~~~~~~v~~i~~SgHa~~~eL~~~~~~~~Pk~~ 400 (429)
T 2az4_A 332 ---V--VNQ--FD--NL--QEGSLYIHSDAQPLGDFDPQYRVFLDLLAKKDITFVRLACSGHAIPEDLDKIIALIEPQVL 400 (429)
T ss_dssp ---C--CSC--GG--GS--CTTCEEEEESCSSCSTTSHHHHHHHHHHHHTTCEEEECCCCSSCCHHHHHHHHHHHCCSEE
T ss_pred ---e--cCc--HH--hh--CCCCEEEEeCCCCCcccchHHHHHHHHHHhCCCEEEEEeecCCCCHHHHHHHHHhhCCCEE
Confidence 2 444 22 23 34588888875444321 1122466788889999999999999999999999999
Q ss_pred EEecCCcccccccccCCceeeecCCCcEEEe
Q 008169 403 LFPEEWRTHVSFSDVTSFSVSHYSENETIHI 433 (575)
Q Consensus 403 ilvHGe~~~~~~l~~~~~~v~~p~~~e~i~l 433 (575)
|.||||...+.. ..+.+++.|++|+++++
T Consensus 401 ipvHGe~~~~~~--~~~~~~~~~~~g~~~~l 429 (429)
T 2az4_A 401 VPIHTLKPEKLE--NPYGERILPERGEQIVL 429 (429)
T ss_dssp EEESCSCGGGCC--CTTSEECCCCTTCEEEC
T ss_pred EECCCCchhhhh--cCCCcEEEeCCCcEEeC
Confidence 999999876554 45678999999999875
No 10
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens}
Probab=99.83 E-value=7.2e-20 Score=190.42 Aligned_cols=259 Identities=12% Similarity=0.120 Sum_probs=158.4
Q ss_pred cccccchhccccCCcceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhHhhhhccCCCCC
Q 008169 2 GMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSE 81 (575)
Q Consensus 2 ~~~aLP~l~~~~gf~g~IY~T~pT~~l~~llL~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 81 (575)
|++|||++. ++|||||..|+++.+..+.+ .
T Consensus 37 Higgl~~l~-----~~pVy~s~~t~~ll~~~l~~--------------------------------------------~- 66 (336)
T 3zdk_A 37 HTVGLSSTW-----ARPLYCSPITAHLLHRHLQV--------------------------------------------S- 66 (336)
T ss_dssp GSTTCSTTC-----CSCEEECHHHHHHHHHHHCC--------------------------------------------C-
T ss_pred HHCchHHHc-----CCCEEecHHHHHHHHHhhhh--------------------------------------------c-
Confidence 689999984 58999999999987643210 0
Q ss_pred CCCCCchHHHHHHHHhcceEecCCCEEEeC------CceEEEeecCCccccceEEEEEeCCeeEEEecCCCCCCCCCCCC
Q 008169 82 LGGGCPCIAHVKDCISKVQTLRFGEEACYN------GILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDF 155 (575)
Q Consensus 82 ~~~~~~ly~dv~~~~~~i~~v~y~q~~~l~------g~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s~~~~~~~~~ 155 (575)
. ..++.+.+++++.+. |+++++++++||++||+++.|+.++.+|+||||+..........
T Consensus 67 -----~---------~~~~~~~~~~~~~i~~~~~~~g~~~v~~~~~~H~~gs~~~~i~~~~~~i~~tGD~~~~~~~~~~~ 132 (336)
T 3zdk_A 67 -----K---------QWIQALEVGESHVLPLDEIGQETMTVTLLDANHCPGSVMFLFEGYFGTILYTGDFRYTPSMLKEP 132 (336)
T ss_dssp -----T---------TTEEECCTTSEEEEESSSSSSCEEEEEEEECSSSTTCEEEEEEETTEEEEECCSCCCCGGGGGCG
T ss_pred -----c---------cceEecCCCCeEEecCcccccCCEEEEEEECCCCcceEEEEEEeCCceEEEeCCCCCCcccccch
Confidence 0 124577788887762 57999999999999999999999999999999987542211111
Q ss_pred CCCCCCCCcEEEEcCCCCCCCCccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHHHhcCCeEEEecCC
Q 008169 156 DYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINR 235 (575)
Q Consensus 156 d~~~l~~~DvLI~e~~st~~~~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~tl~~GG~VLIP~fa 235 (575)
......++|+||+| +|+.... . ... .+.+..+++.+.+.++ .||+|+||+|+
T Consensus 133 ~l~~~~~vD~Li~D--sT~~~~~----------~------------~~p--se~~v~~~l~~~i~~~--~~g~vii~~f~ 184 (336)
T 3zdk_A 133 ALTLGKQIHTLYLD--NTNCNPA----------L------------VLP--SRQEAAHQIVQLIRKH--PQHNIKIGLYS 184 (336)
T ss_dssp GGSSCCCCSEEEEC--CTBCCTT----------C------------CCC--CHHHHHHHHHHHHHTC--TTSEEEEEECS
T ss_pred hhhccCCccEEEEe--cCCCCCC----------C------------CCC--CHHHHHHHHHHHHHhC--CCCcEEEeecc
Confidence 11135689999999 5664100 0 001 1223334455555544 37899999999
Q ss_pred hhHHHHHHHHHHHHHHhCCCcccEEEECchHHHHHHHHHHhHHhhhHHHHHhhccCCCCCcchhhhhcccccccCCCCCh
Q 008169 236 VGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSP 315 (575)
Q Consensus 236 ~GR~qELl~~L~~~~~~~~l~vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~e~pF~~~~l~~~~~l~~~~~i~~~ 315 (575)
+||+|+++.+...+ +.+|++.+ -. +..++ .+. + + +.|....- .+++...
T Consensus 185 vgR~q~i~~~a~~~------grkV~v~g-r~---~~~~~----~lg-------~-~-~~~~~~~~--~~~i~~~------ 233 (336)
T 3zdk_A 185 LGKESLLEQLALEF------QTWVVLSP-RR---LELVQ----LLG-------L-A-DVFTVEEK--AGRIHAV------ 233 (336)
T ss_dssp SSCHHHHHHHHHHH------TCCEECCH-HH---HHHHH----HTT-------C-C-SCEESCGG--GCSEEEE------
T ss_pred hHHHHHHHHHHHHc------CCEEEEEh-HH---HHHHH----hcC-------C-c-cccCCHhH--cCCCCcc------
Confidence 99999999988764 36888753 22 22221 110 1 0 11110000 0111000
Q ss_pred hhhhccCCCEEEEecCCCCCcchHHHHHHHHhCCCCCcEEecC-c-cchhhccCCCceeeeEEEEeecccCCChhhHHHH
Q 008169 316 KLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLEN-E-VDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPL 393 (575)
Q Consensus 316 ~~~~~~~~P~VV~as~gml~~G~s~~~l~~~~~d~~N~Iil~g-~-~~~~~~l~~~~~v~~~v~~~~fsaHaD~~~l~~~ 393 (575)
+.++++ ..-+.+|+.+ ...|-+.+ . .-++ . ...+..+++|+|+++++|..+
T Consensus 234 --------~~~~i~----------~~al~r~~~~-~~~i~i~~S~~~ipg----~----~~~~~~vh~S~Ha~~~EL~~~ 286 (336)
T 3zdk_A 234 --------DHMEIC----------HSNMLRWNQT-HPTIAILPTSRKIHS----S----HPDIHVIPYSDHSSYSELRAF 286 (336)
T ss_dssp --------EGGGCS----------HHHHHHHHHH-SCEEEEEECSSCCCC----S----STTEEEECCCSSCBHHHHHHH
T ss_pred --------hhheeH----------HHHHHhhhCc-CCeEEEEeccccccC----C----ccCceeeEecCCCCHHHHHHH
Confidence 001111 2234455522 22222211 0 0000 0 012467899999999999999
Q ss_pred HhhcCCCEEEEec-CCcc
Q 008169 394 LKILQPKLVLFPE-EWRT 410 (575)
Q Consensus 394 i~~~~P~~vilvH-Ge~~ 410 (575)
++-++|+.++-|| ||..
T Consensus 287 ~~~~~P~~~iPvh~ge~~ 304 (336)
T 3zdk_A 287 VAALKPCQVVPIVSRRPC 304 (336)
T ss_dssp HHHHCCSCEEESCTTSCC
T ss_pred HHHhCCCEEEEEECCcCc
Confidence 9999999999999 9975
No 11
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens}
Probab=99.82 E-value=4.9e-19 Score=186.38 Aligned_cols=239 Identities=11% Similarity=0.097 Sum_probs=149.5
Q ss_pred cceEecCCCEEEeCCceEEEeecCCccccceEEEEEe-CCeeEEEecCCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCC
Q 008169 98 KVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISG-AKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDS 176 (575)
Q Consensus 98 ~i~~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~-~~~~I~YtgD~s~~~~~~~~~d~~~l~~~DvLI~e~~st~~~ 176 (575)
+++.+++++++.+. +++|+++++||++|+++|.|+. ++.+|+||||+........ .+. ...++|+||+| +|++.
T Consensus 96 ~~~~l~~g~~~~ig-~~~v~~~~agH~~gs~~~~i~~~~g~~il~tGD~~~~~~~~~-~~l-~~~~~D~Li~E--sTy~~ 170 (367)
T 4b87_A 96 YIHPLPLDTECIVN-GVKVVLLDANHCPGAVMILFYLPNGTVILHTGDFRADPSMER-SLL-ADQKVHMLYLD--TTYCS 170 (367)
T ss_dssp GEEECCBTSCEEET-TEEEEEEECSSSTTCEEEEEECTTSCEEEECCSCCCCGGGGG-SGG-GTSCCCEEEEC--CTTCS
T ss_pred eEEEeCCCCEEEEC-CEEEEEEeCCCcCCcEEEEEEcCCCcEEEEecCcccCcccch-hhh-ccCCCCEEEEe--cccCC
Confidence 45688999999996 5999999999999999999997 5667999999886432111 111 12479999999 56641
Q ss_pred CccccCCcccCCCCchhhhhhccCCCCccHHHHHHHHHHHHHHHHHHhcCCeE--EEecCChhHHHHHHHHHHHHHHhCC
Q 008169 177 TEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSV--LIPINRVGVFLQLLEQIAIFMECSS 254 (575)
Q Consensus 177 ~~~~~~~~li~~~~~~e~~~~y~~~~~~~~~~~e~l~~l~~~I~~tl~~GG~V--LIP~fa~GR~qELl~~L~~~~~~~~ 254 (575)
. . | .+++ +++..+++++.+.++++++|++ ++|+|++||+|+++.++.++
T Consensus 171 ~-------------~------~---~~ps--~~~~~~~~~~~i~~~~~~~g~~~v~~~a~~igr~q~ll~ia~~~----- 221 (367)
T 4b87_A 171 P-------------E------Y---TFPS--QQEVIRFAINTAFEAVTLNPHALVVCGTYSIGKEKVFLAIADVL----- 221 (367)
T ss_dssp T-------------T------C---CCCC--HHHHHHHHHHHHHHHHHHCTTEEEEEEESSSCCHHHHHHHHHHT-----
T ss_pred C-------------C------C---CCCC--HHHHHHHHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHh-----
Confidence 0 0 0 0122 2334456788888998878875 58999999999999998764
Q ss_pred CcccEEEECchHHHHHHHHHHhHHhhhHHHHHhhccCCCCCcchhhhhcccccccCCCCChhhhhccCCCEEEEecCCCC
Q 008169 255 LKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSL 334 (575)
Q Consensus 255 l~vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~e~pF~~~~l~~~~~l~~~~~i~~~~~~~~~~~P~VV~as~gml 334 (575)
+.+|++. +.-.+++ +.+ ++- .. ...+. . +...-.|-+++.+.+
T Consensus 222 -g~ki~v~-~~~~~il---~~l-~~~--~~-~~~~t-~---------------------------d~~~~~vh~~~~~~~ 264 (367)
T 4b87_A 222 -GSKVGMS-QEKYKTL---QCL-NIP--EI-NSLIT-T---------------------------DMCSSLVHLLPMMQI 264 (367)
T ss_dssp -TCCEECC-HHHHHHH---HTT-CCT--TH-HHHEE-S---------------------------CGGGCSEEEEEGGGC
T ss_pred -CCEEEEe-HHHHHHH---Hhc-CCc--hh-hhhcc-c---------------------------CCccceEEEeecCcC
Confidence 4788864 3222222 111 100 00 00111 0 011123444444444
Q ss_pred CcchHHHHHHHHhCCCCCcEEe--cCccchh---hc---cCCCceeeeEEEEeecccCCChhhHHHHHhhcCCCEEEEec
Q 008169 335 RLGPTIHLLRRWSGDHNSLLVL--ENEVDAE---LA---VLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPE 406 (575)
Q Consensus 335 ~~G~s~~~l~~~~~d~~N~Iil--~g~~~~~---~~---l~~~~~v~~~v~~~~fsaHaD~~~l~~~i~~~~P~~vilvH 406 (575)
+...-..++.+..++-.+.|-| ||+ ... .. +.|...-++.+..+|+|.|+++.+|.+|++.++|++||-+|
T Consensus 265 ~~~~l~~~~~~~~~~~~~~v~~~ptgw-~~~~~~~~~~~~~~~~~~~~~~~~vpySeHss~~EL~~fv~~l~p~~iiptv 343 (367)
T 4b87_A 265 NFKGLQSHLKKCGGKYNQILAFRPTGW-THSNKFTRIADVIPQTKGNISIYGIPYSEHSSYLEMKRFVQWLKPQKIIPTV 343 (367)
T ss_dssp SHHHHHHHHHSGGGCCCEEEEEEECC-----------CCCCCEEETTEEEEEECCCSSCCHHHHHHHHHHHCCSEEEECS
T ss_pred CHHHHHHHHHHhhcccccEEEEcCccc-ccCCCCCcccccccccCCceEEEEEeccCCCCHHHHHHHHHhcCCCeEECee
Confidence 4444445555544444444433 332 111 11 12222335678889999999999999999999999999999
Q ss_pred CC
Q 008169 407 EW 408 (575)
Q Consensus 407 Ge 408 (575)
+-
T Consensus 344 ~~ 345 (367)
T 4b87_A 344 NV 345 (367)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 12
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A*
Probab=97.08 E-value=0.00026 Score=72.00 Aligned_cols=69 Identities=10% Similarity=0.172 Sum_probs=49.1
Q ss_pred ceEecCCCEEEeCCceEEEeecCCccccceEEEEEe--------------------------------------------
Q 008169 99 VQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISG-------------------------------------------- 134 (575)
Q Consensus 99 i~~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~-------------------------------------------- 134 (575)
+..++-++.+++. +++|++++++|..++..+.++.
T Consensus 117 ~~~~~~g~~~~~~-~~~v~~~p~~H~~~~~gy~i~~~~~~~~~~~~~~~~~g~~~g~~~~~l~~g~~v~~~~G~i~~~~~ 195 (320)
T 1y44_A 117 IQEIEEGIVFEDD-QFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVLKEMNIPPGPVYQKIKKGETVTLEDGRIINGND 195 (320)
T ss_dssp EEECCSEEEEECS-SEEEEEEECBSSSSBEEEEEEECCBCCCC-------------------------------------
T ss_pred EEEcCCCceEecC-CEEEEEEEccCCCCcceEEEecCCCcCccCHHHHHHcCCCCchhHHHhhCCCeEEcCCCeEEcHHH
Confidence 3455556777764 5899999999999988888873
Q ss_pred ------CCeeEEEecCCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCC
Q 008169 135 ------AKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLD 175 (575)
Q Consensus 135 ------~~~~I~YtgD~s~~~~~~~~~d~~~l~~~DvLI~e~~st~~ 175 (575)
++.+|+|+||...... + ...++++|+||+| +|+.
T Consensus 196 ~~~~~~~g~~i~~sgDt~~~~~----~-~~~~~~~D~li~E--~t~~ 235 (320)
T 1y44_A 196 FLEPPKKGRSVVFSGDTRVSDK----L-KELARDCDVMVHE--ATFA 235 (320)
T ss_dssp -CCCCBCCCEEEECCSCBCCHH----H-HHHTTTCSEEEEE--CCBC
T ss_pred hcccCCCCCEEEEeCCCCCHHH----H-HHHhCCCCEEEEe--ccCC
Confidence 4679999999653221 0 0134689999999 5653
No 13
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A
Probab=97.05 E-value=0.0005 Score=68.14 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=53.5
Q ss_pred cceEecCCCEEEeCC----ceEEEeecCCcccc--ceEEEEEe---------------------------------CCee
Q 008169 98 KVQTLRFGEEACYNG----ILIIKAFSSGLDIG--ACNWIISG---------------------------------AKGN 138 (575)
Q Consensus 98 ~i~~v~y~q~~~l~g----~i~it~~~AGHiLG--sa~~~I~~---------------------------------~~~~ 138 (575)
+++.++.++++.+.+ +++|+++++||..| +..|.|+. ++.+
T Consensus 105 ~~~~~~~g~~~~~g~~~~~~~~v~~~~~~H~~~~~~~g~~i~~~~~~l~~~~~g~~~~~~~~l~~~~g~~~~~~~~~g~~ 184 (280)
T 2e7y_A 105 NVHPLKEGERVFLRNAGGFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYHKKV 184 (280)
T ss_dssp EEEEECTTCCEECCCSSCSCEEEEEEECCSCSSSCCEEEEEEEEEEEECGGGTTCCHHHHHHHHHHHCTGGGEEEEEEEE
T ss_pred EEEEcCCCCEEEeCCcccCCEEEEEEEccCCCCCceEEEEEEEcccccCHhhcCCCHHHHHHHHhhcCCceecCCccCCE
Confidence 456788899999974 69999999999999 99999973 3568
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCcEEEEcCCCCC
Q 008169 139 IAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSL 174 (575)
Q Consensus 139 I~YtgD~s~~~~~~~~~d~~~l~~~DvLI~e~~st~ 174 (575)
|+|+||.... ....+.++|+||+| +++
T Consensus 185 i~ysgDt~~~-------~~~~~~~~d~li~e--~t~ 211 (280)
T 2e7y_A 185 LTISGDSLAL-------DPEEIRGTELLIHE--CTF 211 (280)
T ss_dssp EEECCSCSSC-------CHHHHTTCSCEEEE--CCB
T ss_pred EEEECCCChH-------HHHhhcCCCEEEEe--CCc
Confidence 9999996632 11234689999999 454
No 14
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7
Probab=96.73 E-value=0.00077 Score=67.91 Aligned_cols=68 Identities=13% Similarity=0.179 Sum_probs=44.3
Q ss_pred eEecCCCEEEeCCceEEEeecCCccccceEEEEEe---------------------------------------------
Q 008169 100 QTLRFGEEACYNGILIIKAFSSGLDIGACNWIISG--------------------------------------------- 134 (575)
Q Consensus 100 ~~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~--------------------------------------------- 134 (575)
+.++-++.+.+. +++|+++++-|..++..+.++.
T Consensus 120 ~~~~~g~~~~~~-~~~v~~~~~~H~~~~~gy~i~~~~~~~~~~~~~~~~~gv~~~~~~~~l~~g~~v~~~~G~~~~~~~~ 198 (306)
T 2cbn_A 120 VEIGAGEILDDG-LRKVTAYPLEHPLECYGYRIEEHDAPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADY 198 (306)
T ss_dssp EECCSEEEEECS-SEEEEEEECBSSSCCEEEEEEECCCCCCBCHHHHHHTTCCSSHHHHHHHHTCCCEETTTEECCGGGT
T ss_pred EEcCCCcEeecC-CEEEEEEEccCCCCccEEEEEecCccCccCHHHHHHcCCCCchHHHHhcCCCeEEcCCCcEEcHHHh
Confidence 344445666654 4777777777777776776653
Q ss_pred -----CCeeEEEecCCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCC
Q 008169 135 -----AKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLD 175 (575)
Q Consensus 135 -----~~~~I~YtgD~s~~~~~~~~~d~~~l~~~DvLI~e~~st~~ 175 (575)
++.+|+|+||...... + ...++++|+||+| +|+.
T Consensus 199 ~~~~~~g~~i~~sgDt~~~~~----~-~~~~~~~D~li~E--~t~~ 237 (306)
T 2cbn_A 199 LAAPVPGKALAIFGDTGPCDA----A-LDLAKGVDVMVHE--ATLD 237 (306)
T ss_dssp BCCCCCCCEEEECCSCBSCST----H-HHHHTTCSEEEEE--CCBC
T ss_pred cCCCCCCCEEEEeCCCCCHHH----H-HHHhcCCCEEEEE--CcCC
Confidence 4679999999654221 0 0124689999999 5653
No 15
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Probab=96.63 E-value=0.0045 Score=61.13 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=41.5
Q ss_pred cceEec-CCCEEEeCCceEEEee-cCCccccceEEEEEeCC-eeEEEecCCCC
Q 008169 98 KVQTLR-FGEEACYNGILIIKAF-SSGLDIGACNWIISGAK-GNIAYISGSNF 147 (575)
Q Consensus 98 ~i~~v~-y~q~~~l~g~i~it~~-~AGHiLGsa~~~I~~~~-~~I~YtgD~s~ 147 (575)
+++.++ +++.+++.+++++.+. + ||..|+..+.++.++ .+++|+||...
T Consensus 165 ~~~~~~~~g~~~~l~~~~~v~~~~p-gHt~g~~~~~~~~~~~~~vl~~GD~~~ 216 (276)
T 2r2d_A 165 NWDLVGRDERERELAPGVNLLNFGT-GHASGMLGLAVRLEKQPGFLLVSDACY 216 (276)
T ss_dssp CEEEECTTCCEEEEETTEEEEEEES-SSSSSEEEEEEECSSSCEEEEEETTSC
T ss_pred cceeccCCCceeEecCCEEEEeCCC-CCCceeEEEEEEcCCCceEEEEechhh
Confidence 456676 6889999766999999 6 999999999999877 89999999653
No 16
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A
Probab=96.41 E-value=0.0044 Score=60.94 Aligned_cols=68 Identities=9% Similarity=0.082 Sum_probs=53.3
Q ss_pred eEecCCCEEEeCCceEEEeecCCccccceEEEEEeCCeeEEEecCCCCCCCCCCCCCCCCC--CCCcEEEEcCCCCC
Q 008169 100 QTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAI--QGSDLILYSDLSSL 174 (575)
Q Consensus 100 ~~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s~~~~~~~~~d~~~l--~~~DvLI~e~~st~ 174 (575)
..++.++++.+. +++|+++++.|..|+..|.|+.++.+++|+||........ ...+ .++|+||+| +++
T Consensus 121 ~~~~~g~~~~~g-~~~v~~~~~~H~~~~~g~~i~~~~~~i~~~GDt~~~~~~~----~~~l~~~~~Dlli~e--~t~ 190 (258)
T 3g1p_A 121 HTVEPFVVFDLQ-GLQVTPLPLNHSKLTFGYLLETAHSRVAWLSDTAGLPEKT----LKFLRNNQPQVMVMD--CSH 190 (258)
T ss_dssp EECCTTCCEEET-TEEEEEEECCSSSCCEEEEEECSSCEEEEECSCSSCCHHH----HHHHHHTCCSEEEEE--CCB
T ss_pred cccCCCCeEEEC-CEEEEEEECCCCCCceEEEEEeCCcEEEEECCCCCCCHHH----HHHHHhCCCCEEEEe--CCC
Confidence 467788999996 5999999999999999999999999999999966321100 0123 589999999 454
No 17
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9
Probab=96.38 E-value=0.0043 Score=61.22 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=52.4
Q ss_pred cceEecCCCEEEeCCceEEEeecCCccccceEEEEEeCCeeEEEecCCCCCCCCCCCCCCCCCCCCcEEEEc
Q 008169 98 KVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 169 (575)
Q Consensus 98 ~i~~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s~~~~~~~~~d~~~l~~~DvLI~e 169 (575)
++..++.++++.+. +++|+++++.|..|+..|.|+.++.+++|+||....... . ..++++|+||+|
T Consensus 134 ~~~~~~~g~~~~~g-~~~v~~~~~~H~~~~~~~~i~~~~~~i~~~GD~~~~~~~---~--~~~~~~d~li~e 199 (268)
T 1zkp_A 134 KGIPYNPEETLQIG-PFSISFLKTVHPVTCFAMRITAGNDIVVYSADSSYIPEF---I--PFTKDADLFICE 199 (268)
T ss_dssp EEEECCTTSCEEET-TEEEEEEECCSSSCCEEEEEEETTEEEEECCSCCCCTTH---H--HHHTTCSEEEEE
T ss_pred ceEEecCCCeEEEC-CEEEEEEECCCCCCceEEEEEECCeEEEEeCCCCCCHHH---H--HHHcCCCEEEEE
Confidence 34567778889985 699999999999999999999999999999997542110 0 123589999999
No 18
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=96.17 E-value=0.0064 Score=60.47 Aligned_cols=42 Identities=10% Similarity=-0.051 Sum_probs=33.7
Q ss_pred CCEEEeCCceEEEeecCCccccceEEEEEeCCeeEEEecCCCC
Q 008169 105 GEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNF 147 (575)
Q Consensus 105 ~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s~ 147 (575)
.....+.+++++. ...||..|++.+.++.++++++|+||...
T Consensus 168 ~~~~~l~~gi~~~-~~pGHt~g~~~~~i~~~~~~vlftGD~~~ 209 (280)
T 3esh_A 168 EKHFEPVPGIKMQ-HSGGHSFGHTIITIESQGDKAVHMGDIFP 209 (280)
T ss_dssp SSEECSSTTEEEE-ECCSSSTTCEEEEEEETTEEEEECGGGSC
T ss_pred CCCCeEcCCEEEE-EcCCCCcccEEEEEEECCcEEEEEEccCC
Confidence 4455565668874 45799999999999999999999999653
No 19
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A*
Probab=95.90 E-value=0.0053 Score=61.67 Aligned_cols=65 Identities=12% Similarity=0.242 Sum_probs=48.6
Q ss_pred cceEecCCCEEEeCCc---eEEEeecCCcc-ccceEEEEEeCCeeEEEecCCCCCCCCCCCCCCCCCCCCcEEEEcC
Q 008169 98 KVQTLRFGEEACYNGI---LIIKAFSSGLD-IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSD 170 (575)
Q Consensus 98 ~i~~v~y~q~~~l~g~---i~it~~~AGHi-LGsa~~~I~~~~~~I~YtgD~s~~~~~~~~~d~~~l~~~DvLI~e~ 170 (575)
+++.++.++++.+.+. ++|+++++.|. .++..|.|+ +++|+||........ ...+.++|+||+|.
T Consensus 163 ~~~~l~~g~~~~~g~~~~~~~v~~~~~~H~~~~~~g~~i~----~~~y~gDt~~~~~~~----~~~~~~~Dlli~e~ 231 (293)
T 3md7_A 163 SMHDIAPETPFSIEGAGGAIRFEPFSQVHGDIESLGFRIG----SVVYCTDVSAFPEQS----LQYIKDADVLIIGA 231 (293)
T ss_dssp EEEECCTTCCEEECCTTCCEEEEEEEEEETTEEEEEEEET----TEEEECSCSBCCGGG----HHHHTTCSEEEEEC
T ss_pred EEEEcCCCCcEEECCCCCcEEEEEEEecCCCCCEEEEEEe----EEEEECCCCCCCHHH----HHHhcCCCEEEEeC
Confidence 3466777889998632 99999999998 799999987 899999975321100 01346899999994
No 20
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503}
Probab=95.87 E-value=0.016 Score=56.21 Aligned_cols=77 Identities=10% Similarity=0.160 Sum_probs=61.2
Q ss_pred CchH--HHHHHHHhcceEecCCC-EEEeCCceEEEeecCCcccc----------ceEEEEEeCCeeEEEecCCCCCCCCC
Q 008169 86 CPCI--AHVKDCISKVQTLRFGE-EACYNGILIIKAFSSGLDIG----------ACNWIISGAKGNIAYISGSNFASGHA 152 (575)
Q Consensus 86 ~~ly--~dv~~~~~~i~~v~y~q-~~~l~g~i~it~~~AGHiLG----------sa~~~I~~~~~~I~YtgD~s~~~~~~ 152 (575)
.++| .+..+.+++...++.++ ++++. +++|+++++-|..+ ++.|.|+.++.+++|+||.....
T Consensus 92 ~~v~~~~~~~~~l~~~~~l~~g~~~~~~g-~~~i~~~p~~H~~~~~~~~~~~~~~~g~~i~~~g~~i~~~GDt~~~~--- 167 (235)
T 3kl7_A 92 TEIIANENSQKKLGKGKVLKNGDTDTSIS-YMKIEAVPAYNTTPGRDKYHPRHRDNGYILTFDGLRVYIAGDTEDIP--- 167 (235)
T ss_dssp CEEEECHHHHHHHTCSEECCTTCEECCST-TCEEEEEECCCCSTTGGGTSCTTTSEEEEEEETTEEEEECCSCCSCG---
T ss_pred CEEEEcHHHHHHhcCcEEecCCCEEEEEC-CEEEEEEEeecCCCccccccCCCCceEEEEEeCCeEEEEECCCCchh---
Confidence 3667 77777888899999999 99986 59999999987653 47999999999999999966432
Q ss_pred CCCCCCCCCCCcEEEEc
Q 008169 153 MDFDYRAIQGSDLILYS 169 (575)
Q Consensus 153 ~~~d~~~l~~~DvLI~e 169 (575)
+...+.++|+++++
T Consensus 168 ---~~~~l~~~Dv~il~ 181 (235)
T 3kl7_A 168 ---EMKDLKDIDIAFLP 181 (235)
T ss_dssp ---GGGGCCSCSEEEEE
T ss_pred ---hHHhhcCCCEEEEC
Confidence 12235689999998
No 21
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A
Probab=95.81 E-value=0.0093 Score=60.95 Aligned_cols=68 Identities=12% Similarity=0.159 Sum_probs=48.0
Q ss_pred ceEecCCCEEEe--CCceEEEeecCC--------cc-----ccceEEEEE--eCCeeEEEecCCCCCCCCCCCCCCCCCC
Q 008169 99 VQTLRFGEEACY--NGILIIKAFSSG--------LD-----IGACNWIIS--GAKGNIAYISGSNFASGHAMDFDYRAIQ 161 (575)
Q Consensus 99 i~~v~y~q~~~l--~g~i~it~~~AG--------Hi-----LGsa~~~I~--~~~~~I~YtgD~s~~~~~~~~~d~~~l~ 161 (575)
+..+.-++++.+ .++++|++++.- |- ..+..+.|+ .++++++|+||........ ...++
T Consensus 139 ~~~i~~g~~~~i~~~~~~~V~~~~v~H~~~~~~~H~~~~~~~~~~Gy~i~~~~~g~~i~y~~Dt~~~~~~~----~~~~~ 214 (321)
T 3jxp_A 139 WNRIELEGSFVIDACPNLKFTPFPLRSAAPPYSPHRFDPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDEKL----LAMMH 214 (321)
T ss_dssp EEECCSSSCEECTTSTTEEEEEEEECCCCCTTCTTTTSCCTTSEEEEEEEETTTCCEEEEESSCCCCCHHH----HHHHH
T ss_pred EEEcCCCCeEEeccCCCeEEEEEEecCCccccccccccccCCCcEEEEEEecCCCcEEEEECCCCCCCHHH----HHHhc
Confidence 345666788888 235999999986 65 467789999 7899999999954211000 01245
Q ss_pred CCcEEEEcC
Q 008169 162 GSDLILYSD 170 (575)
Q Consensus 162 ~~DvLI~e~ 170 (575)
++|+||+|+
T Consensus 215 ~~D~li~ea 223 (321)
T 3jxp_A 215 GADCLLVDG 223 (321)
T ss_dssp HCSEEEEEC
T ss_pred CCCEEEEeC
Confidence 799999993
No 22
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=95.04 E-value=0.069 Score=51.48 Aligned_cols=44 Identities=7% Similarity=0.014 Sum_probs=34.0
Q ss_pred EecCCCEEEeCCceEEEee--cCCccccceEEEEEeCCeeEEEecCCCC
Q 008169 101 TLRFGEEACYNGILIIKAF--SSGLDIGACNWIISGAKGNIAYISGSNF 147 (575)
Q Consensus 101 ~v~y~q~~~l~g~i~it~~--~AGHiLGsa~~~I~~~~~~I~YtgD~s~ 147 (575)
.++-++++.+. +.+++++ ..||..|+..+.+ .+.+++|+||...
T Consensus 142 ~~~~g~~l~~g-~~~i~~~~~~pGHt~g~~~~~~--~~~~~lf~GD~~~ 187 (246)
T 2fhx_A 142 DLKQGKVFSFS-NELVEVSFPGPAHSPDNVVVYF--PKKKLLFGGCMIK 187 (246)
T ss_dssp CTTTCEEEEET-TEEEEEECCCCSSSTTCCEEEE--TTTTEEEEETTCC
T ss_pred ecCCCCEEEEC-CEEEEEEeCCCCCCCCCEEEEE--cCCCEEEECCEec
Confidence 45567788885 4788886 3799999998886 4578999999653
No 23
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii}
Probab=93.70 E-value=0.11 Score=50.34 Aligned_cols=44 Identities=14% Similarity=0.099 Sum_probs=34.9
Q ss_pred cceEecCCCEEEeCCceEEEeec-CCccccceEEEEEeCCeeEEEecCCC
Q 008169 98 KVQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGAKGNIAYISGSN 146 (575)
Q Consensus 98 ~i~~v~y~q~~~l~g~i~it~~~-AGHiLGsa~~~I~~~~~~I~YtgD~s 146 (575)
++..++-++++.+. ++++++++ .||..|+..+.+ .+++|+||..
T Consensus 123 ~~~~~~~g~~~~~g-~~~i~~~~~pGHt~~~~~~~~----~~~lf~GD~~ 167 (261)
T 3adr_A 123 KVIEVEGNEEFDLG-GYRMRLIYTPGHARHHMSVLV----DDFLFTGDSA 167 (261)
T ss_dssp GEEEECSCCEEECS-SSEEEEEECTTSCTTCEEEEE----TTEEEEETSS
T ss_pred ceEecCCCCEEEEC-CEEEEEEECCCCCCccEEEEE----CCEEEEcCcc
Confidence 45677888999985 57888876 489999998864 4899999954
No 24
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0
Probab=93.28 E-value=0.15 Score=48.11 Aligned_cols=44 Identities=9% Similarity=-0.152 Sum_probs=35.4
Q ss_pred eEecCCCEEEeCCceEEEeec--CCccccceEEEEEeCCeeEEEecCCC
Q 008169 100 QTLRFGEEACYNGILIIKAFS--SGLDIGACNWIISGAKGNIAYISGSN 146 (575)
Q Consensus 100 ~~v~y~q~~~l~g~i~it~~~--AGHiLGsa~~~I~~~~~~I~YtgD~s 146 (575)
..++-++++.+. +++++++. .||..|+..+.+. +.+++|+||..
T Consensus 115 ~~~~~g~~~~~g-~~~i~~~~~~pgHt~g~~~~~~~--~~~~lf~GD~~ 160 (219)
T 3l6n_A 115 EIIKTGKPYRIG-GEEFVVDFLGEGHTADNVVVWFP--KYNVLDGGCLV 160 (219)
T ss_dssp EECCTTSEEEET-TEEEEEECCCCSSSSSCCEEEET--TTTEEEEETTS
T ss_pred EecCCCCEEEEC-CEEEEEEeCCCCCCCCCEEEEEC--CCCEEEECCee
Confidence 355678889986 58888875 7999999998874 66899999954
No 25
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A*
Probab=91.08 E-value=0.4 Score=49.37 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=48.0
Q ss_pred cceEecCCCEEEeCCceEEEeecCCcc------------c---------cceEEEEEeCCeeEEEecCCCCCCCCCCCCC
Q 008169 98 KVQTLRFGEEACYNGILIIKAFSSGLD------------I---------GACNWIISGAKGNIAYISGSNFASGHAMDFD 156 (575)
Q Consensus 98 ~i~~v~y~q~~~l~g~i~it~~~AGHi------------L---------Gsa~~~I~~~~~~I~YtgD~s~~~~~~~~~d 156 (575)
+++.++.++++.+. +++|+++++-|. . +++.|.|+.++.+|+|+||........ .
T Consensus 160 ~~~~l~~g~~~~~g-~~~v~~~~~~H~~~~~~~~~~~h~~g~~~~~~~~~~~g~~i~~~g~~i~~sGDt~~~~~~~---~ 235 (360)
T 2wyl_A 160 RCIVVKPGDVVKVK-DIEIHALDAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSHYSNYYA---K 235 (360)
T ss_dssp GEEECCTTCEEEET-TEEEEEEECCCC------------------CCTTTBEEEEEEETTEEEEECTTCCCCTTHH---H
T ss_pred eEEEcCCCCEEEEC-CEEEEEEeccCcccccccccccccccccccccCcccEEEEEEECCcEEEEeCCCCcCHHHH---H
Confidence 57788999999996 599999998442 2 378999999999999999965421100 0
Q ss_pred CCCCCCCcEEEEc
Q 008169 157 YRAIQGSDLILYS 169 (575)
Q Consensus 157 ~~~l~~~DvLI~e 169 (575)
.....++|++++.
T Consensus 236 i~~~~~~Dv~il~ 248 (360)
T 2wyl_A 236 HGNEHQIDVALGS 248 (360)
T ss_dssp HHHHSCCCEEEEE
T ss_pred HhhCCCCCEEEec
Confidence 0001257998886
No 26
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11
Probab=90.73 E-value=0.27 Score=46.69 Aligned_cols=48 Identities=8% Similarity=0.041 Sum_probs=38.8
Q ss_pred hcceEecCCCEEEeCCceEEEeecCCccccceEEEEEeCC-eeEEEecCCC
Q 008169 97 SKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAK-GNIAYISGSN 146 (575)
Q Consensus 97 ~~i~~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~-~~I~YtgD~s 146 (575)
.++..++-++++. .+++++.+.+ ||..|+..+.++.++ .+++|+||..
T Consensus 128 ~~~~~~~~g~~l~-~~~~~v~~~p-GHt~g~~~~~~~~~~~~~vlftGD~~ 176 (221)
T 1ztc_A 128 KNVVLLKGEESLF-DEKVKVFHTP-WHAREHLSFLLDTENAGRVLITGDIT 176 (221)
T ss_dssp CSEEEECSCCEET-TTTEEEEECC-SSSTTCEEEEEEETTTEEEEECGGGS
T ss_pred cceEEeCCCCEEE-CCeEEEEEcC-CCCcccEEEEEEcCCCCeEEEEeCcc
Confidence 4566777777764 2378998887 999999999999876 7999999954
No 27
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4
Probab=89.94 E-value=0.38 Score=45.93 Aligned_cols=60 Identities=13% Similarity=0.088 Sum_probs=42.5
Q ss_pred CEEEeCCceEEEeecCCcccc-------ceEEEEEeCCeeEEEecCCCCCCCCCCCCCCCCCCCCcEEEEc
Q 008169 106 EEACYNGILIIKAFSSGLDIG-------ACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 169 (575)
Q Consensus 106 q~~~l~g~i~it~~~AGHiLG-------sa~~~I~~~~~~I~YtgD~s~~~~~~~~~d~~~l~~~DvLI~e 169 (575)
..+++. +++|+++++-|..+ ++.|.|+.++.+|+|+||...... ......+.++|+++++
T Consensus 79 g~~~~~-~~~I~~~~~~H~~~~g~~~g~~~g~~i~~~g~~i~~~GDt~~~~~---~~~~~~~~~~Dvlil~ 145 (220)
T 1vjn_A 79 GAYTVN-GVKIKGVETFHDPSHGRERGKNIVFVFEGEGIKVCHLGDLGHVLT---PAQVEEIGEIDVLLVP 145 (220)
T ss_dssp EEEEET-TEEEEEEEEEEC-------CEEEEEEEEETTEEEEECTTCCSCCC---HHHHHHHCCCSEEEEE
T ss_pred CeEEEC-CEEEEEEeeecCCCCCccCCCcEEEEEEECCeEEEEeCCCCCcch---HHHHHhhCCCCEEEEc
Confidence 367775 59999999999873 478999999999999999653210 0001123579999998
No 28
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A
Probab=89.52 E-value=0.43 Score=46.98 Aligned_cols=46 Identities=13% Similarity=0.383 Sum_probs=38.3
Q ss_pred eEecCCCEEEeCCceEEEeec-CCccccceEEEEEeCCe----eEEEecCCC
Q 008169 100 QTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGAKG----NIAYISGSN 146 (575)
Q Consensus 100 ~~v~y~q~~~l~g~i~it~~~-AGHiLGsa~~~I~~~~~----~I~YtgD~s 146 (575)
..+.-++++.+. +++++++. .||..|++.+.++.++. +++|+||..
T Consensus 154 ~~~~~g~~~~~g-~~~i~~~~~pgHt~g~~~~~~~~~~~~~~~~~lf~GD~~ 204 (294)
T 3m8t_A 154 RAVKEGDRVTLG-DTTLTAHATPGHSPGCTSWEMTVKDGKEDREVLFFCSGT 204 (294)
T ss_dssp EEECTTCEEEET-TEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEECCCCC
T ss_pred eEeCCCCEEEeC-CEEEEEEeCCCCCccCEEEEEEccCCCccceEEEEcCcc
Confidence 567889999996 48888876 78999999999986554 899999954
No 29
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=88.99 E-value=0.099 Score=50.41 Aligned_cols=44 Identities=11% Similarity=-0.074 Sum_probs=33.1
Q ss_pred EecCCCEEEeCCceEEEeecCCccccceEEEEEeCCeeEEEecCCCC
Q 008169 101 TLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNF 147 (575)
Q Consensus 101 ~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s~ 147 (575)
.+.-++.+.+. ++++..+..||..|+..+.+. +.+++|+||...
T Consensus 141 ~~~~g~~~~~g-~~~v~~~~pGHt~g~~~~~~~--~~~~lf~GD~~~ 184 (243)
T 4hl2_A 141 WVEPATAPNFG-PLKVFYPGPGHTSDNITVGID--GTDIAFGGCLIK 184 (243)
T ss_dssp BBCGGGSTTCT-TEEEECCCSSSSTTCCEEEET--TTTEEECTTTCC
T ss_pred EecCCCeEEEC-CEEEEeCCCCCCcCCEEEEEc--CCCEEEEcceee
Confidence 34445566664 588866789999999999874 678999999543
No 30
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B
Probab=88.74 E-value=0.27 Score=48.59 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=34.8
Q ss_pred cceEecCCCEEEeCCceEEEeec-CCccccceEEEEEeCC---eeEEEecCCC
Q 008169 98 KVQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGAK---GNIAYISGSN 146 (575)
Q Consensus 98 ~i~~v~y~q~~~l~g~i~it~~~-AGHiLGsa~~~I~~~~---~~I~YtgD~s 146 (575)
..+.++.++++.+. +.+++++. .||..|+..+.++... .+.+++||..
T Consensus 157 ~~~~~~~g~~~~~g-~~~v~~~~~pgHt~g~~~~~~~~~~~~~~~~~l~gD~l 208 (303)
T 4ax1_B 157 NIVTLADDGVVSVG-PLALTAVASPGHTPGGTSWTWRSCEGDDCRQMVYADSL 208 (303)
T ss_dssp CEEEECTTCEEEET-TEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEECCCC
T ss_pred CcEEeCCCCEEEEC-CeEEEEEeCCCCCccceEEEEEecCCCceeEEEEeCCc
Confidence 45678889999996 47777765 7899999999987631 1234448854
No 31
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A*
Probab=88.56 E-value=0.67 Score=46.73 Aligned_cols=47 Identities=9% Similarity=0.135 Sum_probs=39.1
Q ss_pred ceEecCCCEEEeCCceEEEeecC-CccccceEEEEEeCC---e-eEEEecCCC
Q 008169 99 VQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGAK---G-NIAYISGSN 146 (575)
Q Consensus 99 i~~v~y~q~~~l~g~i~it~~~A-GHiLGsa~~~I~~~~---~-~I~YtgD~s 146 (575)
...+.-++.+.+. +++++++.. ||..|+..+.++.++ . +++|+||..
T Consensus 131 ~~~l~~g~~l~lg-~~~l~vi~tPGHT~g~i~~~~~~~~~~~~~~~lftGD~l 182 (311)
T 2p18_A 131 TKPVREGDRVQVG-DLSVEVIDAPCHTRGHVLYKVQHPQHPNDGVALFTGDTM 182 (311)
T ss_dssp SEEECTTCEEEET-TEEEEEEECCSSSTTCEEEEEECTTCGGGCEEEEEETTE
T ss_pred ceEeCCCCEEEEC-CeEEEEEECCCCCcccEEEEEecCCcCCcCCEEEEcCcc
Confidence 4567778899985 578888776 999999999998776 7 999999954
No 32
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens}
Probab=87.33 E-value=0.46 Score=49.21 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.6
Q ss_pred CceEEEeecCCccccceEEEEEeC
Q 008169 112 GILIIKAFSSGLDIGACNWIISGA 135 (575)
Q Consensus 112 g~i~it~~~AGHiLGsa~~~I~~~ 135 (575)
++++|+++++-|-+.+..|.|+..
T Consensus 169 ~~~~V~a~~~~H~vp~~gy~i~e~ 192 (368)
T 3zwf_A 169 EQFVVKAFRLFHRIPSFGFSVVEK 192 (368)
T ss_dssp SSEEEEEEEEESSSCEEEEEEEEC
T ss_pred CCEEEEEEeccCCCceEEEEEEec
Confidence 579999999999999999999753
No 33
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}
Probab=86.80 E-value=11 Score=37.02 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=37.5
Q ss_pred cceEecCCCEEEeCCceEEEeecC-CccccceEEEEEeCCeeEEEecCCCC
Q 008169 98 KVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGAKGNIAYISGSNF 147 (575)
Q Consensus 98 ~i~~v~y~q~~~l~g~i~it~~~A-GHiLGsa~~~I~~~~~~I~YtgD~s~ 147 (575)
....+.-++++.+. +.+++++.. ||..|+..+.+ ++.+++|+||...
T Consensus 146 ~~~~~~~g~~l~~g-g~~~~~i~tpGHt~g~~~~~~--~~~~~lf~GD~~~ 193 (317)
T 2zo4_A 146 NPLPLRDGEALEVA-GKRLRVLWTPGHADGHAAFYL--EEEGVLLAGDALL 193 (317)
T ss_dssp SCEEECTTCEEEET-TEEEEEEECCSSSTTCEEEEE--TTTTEEEEETSCC
T ss_pred CceEECCCCEEEeC-CceEEEEECCCCCcccEEEEe--CCCCEEEECCEec
Confidence 34667778899986 478888776 99999999875 5779999999553
No 34
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A
Probab=86.25 E-value=1.3 Score=42.79 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=37.2
Q ss_pred ceEecCCCEEEeCCceEEEeec-CCccccceEEEEEeC--C--eeEEEecCCC
Q 008169 99 VQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGA--K--GNIAYISGSN 146 (575)
Q Consensus 99 i~~v~y~q~~~l~g~i~it~~~-AGHiLGsa~~~I~~~--~--~~I~YtgD~s 146 (575)
...+.-++.+.+. +++++++. .||..|+..+.++.. + .+++|+||..
T Consensus 125 ~~~~~~g~~~~~g-~~~i~~i~~pGHt~g~~~~~~~~~~~~~~~~~lf~GD~~ 176 (263)
T 1k07_A 125 DKVLHDGERVELG-GTVLTAHLTPGHTRGCTTWTMKLKDHGKQYQAVIIGSIG 176 (263)
T ss_dssp SEEECTTCEEEET-TEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEEECCCC
T ss_pred ceEeCCCCEEEEC-CeEEEEEECCCCCCCcEEEEEecccCCceeEEEEECCcc
Confidence 4567788999986 57777765 499999999999874 4 4899999954
No 35
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor}
Probab=85.98 E-value=1.3 Score=45.90 Aligned_cols=68 Identities=18% Similarity=0.139 Sum_probs=48.7
Q ss_pred cceEecCCCEEEeCCceEEEeecCCcc----------------------ccceEEEEEeCCeeEEEecCCCCCCCCCCCC
Q 008169 98 KVQTLRFGEEACYNGILIIKAFSSGLD----------------------IGACNWIISGAKGNIAYISGSNFASGHAMDF 155 (575)
Q Consensus 98 ~i~~v~y~q~~~l~g~i~it~~~AGHi----------------------LGsa~~~I~~~~~~I~YtgD~s~~~~~~~~~ 155 (575)
+++.++.++++.+. +++|+++++-|. .+++.|.|+.++.+|+|+||........
T Consensus 184 ~~~~l~~g~~~~~g-~~~v~~~~~~H~~~~~~~p~~h~~~~G~~~~~~~~~~~g~~i~~~g~~i~~sGDt~~~~~~~--- 259 (379)
T 3bv6_A 184 RCIVAKVGDVLEIG-DVKIRVLDSFDRTALVTLPKGVSSYDKAILDGMDERAVNYLIETSGGSVYHSGDSHYSNYYA--- 259 (379)
T ss_dssp GEEECCTTCEEEET-TEEEEEEECCCHHHHTCCCTTSCSSCGGGGGCHHHHBEEEEEEETTEEEEECTTCCCCTTHH---
T ss_pred hEEEeCCCCEEEEC-CEEEEEEecccccccccccccccccccccccccCCceEEEEEEeCCeEEEEeCCCCccHHHH---
Confidence 56788999999996 599999998663 2378999999999999999965421100
Q ss_pred CCCCCCCCcEEEEc
Q 008169 156 DYRAIQGSDLILYS 169 (575)
Q Consensus 156 d~~~l~~~DvLI~e 169 (575)
......++|++++.
T Consensus 260 ~i~~~~~~Dv~il~ 273 (379)
T 3bv6_A 260 KHGNDYQIDVALLS 273 (379)
T ss_dssp HHHHHSCCSEEEEE
T ss_pred HHhhcCCCCEEEec
Confidence 00001157999886
No 36
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=85.46 E-value=1.2 Score=46.82 Aligned_cols=80 Identities=15% Similarity=0.045 Sum_probs=56.8
Q ss_pred cccccchhccccCCcceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhHhhhhccCCCCC
Q 008169 2 GMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSE 81 (575)
Q Consensus 2 ~~~aLP~l~~~~gf~g~IY~T~pT~~l~~llL~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 81 (575)
|.+|||.+.++++-+.+||++..++++.+ ....
T Consensus 102 H~G~l~~l~~~~~~~~~v~~s~~~~~~l~----~~~~------------------------------------------- 134 (410)
T 4dik_A 102 ASGSLPATLKTIGHDVEIIASNFGKRLLE----GFYG------------------------------------------- 134 (410)
T ss_dssp HHTTHHHHHHHHCSCCEEEECHHHHHHHH----HHHC-------------------------------------------
T ss_pred hhhhHHHHHHHcCCCCEEEeCHHHHHHHH----hhcC-------------------------------------------
Confidence 46899999887666789999998876532 2110
Q ss_pred CCCCCchHHHHHHHHhcceEecCCCEEEeCCceEEEeecC-C-ccccceEEEEEeCCeeEEEecCCCC
Q 008169 82 LGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSS-G-LDIGACNWIISGAKGNIAYISGSNF 147 (575)
Q Consensus 82 ~~~~~~ly~dv~~~~~~i~~v~y~q~~~l~g~i~it~~~A-G-HiLGsa~~~I~~~~~~I~YtgD~s~ 147 (575)
...++.++-++++++. +.+++++.+ | |..|+.++.. .+++||||.-+
T Consensus 135 --------------~~~~~~v~dGd~l~lG-~~~L~~i~tPg~H~p~~~~~y~----~~iLFsgD~fg 183 (410)
T 4dik_A 135 --------------IKDVTVVKDGEEREIG-GKKFKFVMTPWLHWPDTMVTYL----DGILFSCDVGG 183 (410)
T ss_dssp --------------CCCEEECCTTCEEEET-TEEEEEEECTTSSSTTCEEEEE----TTEEEEETTTC
T ss_pred --------------ccceeEecCCCEEeec-ceEEEEecCCCCCCCCCeeEEe----CCceEcccccc
Confidence 0123567778999996 467777666 5 9999988774 37999999543
No 37
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica}
Probab=84.49 E-value=0.8 Score=42.66 Aligned_cols=44 Identities=9% Similarity=0.130 Sum_probs=34.6
Q ss_pred eEecCCCEEEeCCceEEEeec-CCccccceEEEEEeCCeeEEEecCCC
Q 008169 100 QTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGAKGNIAYISGSN 146 (575)
Q Consensus 100 ~~v~y~q~~~l~g~i~it~~~-AGHiLGsa~~~I~~~~~~I~YtgD~s 146 (575)
..++-++++.+. +.+++++. .||..|+..+.+ ++.+++|+||..
T Consensus 109 ~~~~~g~~~~~g-~~~i~~~~~pgHt~g~~~~~~--~~~~~lf~GD~~ 153 (210)
T 2xf4_A 109 RWLNDGDRVSVG-NVTLQVLHCPGHTPGHVVFFD--EQSQLLISGDVI 153 (210)
T ss_dssp BCCCTTCEEEET-TEEEEEEECCSSSTTCEEEEE--TTTTEEEEETSE
T ss_pred eEECCCCEEEEC-CeEEEEEECCCCCCCcEEEEe--CCCCEEEECCEe
Confidence 456678889986 47787764 599999999886 478999999954
No 38
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=84.34 E-value=1.6 Score=45.45 Aligned_cols=43 Identities=5% Similarity=-0.187 Sum_probs=30.8
Q ss_pred eEecCCCEEEeCCceEEE--eecCCccccceEEEEEeCCeeEEEecCC
Q 008169 100 QTLRFGEEACYNGILIIK--AFSSGLDIGACNWIISGAKGNIAYISGS 145 (575)
Q Consensus 100 ~~v~y~q~~~l~g~i~it--~~~AGHiLGsa~~~I~~~~~~I~YtgD~ 145 (575)
..++-++++.+.+ .+++ ..+.||..|+..+.+ .+.+++|+||.
T Consensus 128 ~~~~~g~~~~lg~-~~~~~~~~p~gHt~~~~~~~~--~~~~~lf~GD~ 172 (414)
T 2q9u_A 128 LIVDDKYTLKIGK-RTLKFIPVPLLHWPDSTFTYC--PEDKILFSNDG 172 (414)
T ss_dssp EECCTTCCEECSS-CEEEEEECTTSSSTTCEEEEE--TTTTEEEEETT
T ss_pred EEeCCCCEEEECC-eEEEEEeCCCCCCCCceEEEE--CCCeEEEEccc
Confidence 4566678888854 4555 445589999887554 46789999994
No 39
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei}
Probab=84.27 E-value=1.5 Score=43.46 Aligned_cols=46 Identities=17% Similarity=0.345 Sum_probs=37.7
Q ss_pred eEecCCCEEEeCCceEEEeecC-CccccceEEEEEeCCee------EEEecCCC
Q 008169 100 QTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGAKGN------IAYISGSN 146 (575)
Q Consensus 100 ~~v~y~q~~~l~g~i~it~~~A-GHiLGsa~~~I~~~~~~------I~YtgD~s 146 (575)
..+.-++++.+. +++++++.. ||..|+..+.+..++.+ ++|+||..
T Consensus 124 ~~~~~g~~l~~g-~~~i~vi~tPGHT~g~~~~~~~~~~~~~~~~~~~lftGD~l 176 (298)
T 4efz_A 124 RLLDDGDTLALG-ALSIRAMHTPGHTPACMTYVVTEAHAAHDARDAAAFVGDTL 176 (298)
T ss_dssp EEECTTCEEEET-TEEEEEEECCSSSTTCEEEEEEETTCCGGGCBCEEECCSSB
T ss_pred EEeCCCCEEEEC-CEEEEEEECCCCCcccEEEEECCCcccccCCceEEEEcCcc
Confidence 567888999996 477777664 99999999999887655 99999954
No 40
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A
Probab=84.23 E-value=0.51 Score=44.44 Aligned_cols=38 Identities=5% Similarity=-0.055 Sum_probs=26.8
Q ss_pred CEEEeCC-ceEEEeecCCccccceEEEEEeCCeeEEEecCCC
Q 008169 106 EEACYNG-ILIIKAFSSGLDIGACNWIISGAKGNIAYISGSN 146 (575)
Q Consensus 106 q~~~l~g-~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s 146 (575)
..+.+.+ .+++.....||..|+..+.+. +.+++| ||..
T Consensus 129 ~~~~l~~~~~~~~~~~pGHt~g~~~~~~~--~~~~lf-gd~l 167 (227)
T 3iog_A 129 GDFTLQEGKVRAFYAGPAHTPDGIFVYFP--DEQVLY-GGCI 167 (227)
T ss_dssp SCEEETTTTEEEECCCCSSSSSCCEEEET--TTTEEE-CGGG
T ss_pred CeEEEcCcEEEEEecCCCCCCCcEEEEec--CCCEEE-cccc
Confidence 3466654 355555557999999998874 567999 8743
No 41
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A
Probab=84.02 E-value=0.77 Score=44.73 Aligned_cols=40 Identities=10% Similarity=0.133 Sum_probs=31.9
Q ss_pred CEEEeCCceEEEeecCCccccceEEEEEeC-CeeEEEecCCC
Q 008169 106 EEACYNGILIIKAFSSGLDIGACNWIISGA-KGNIAYISGSN 146 (575)
Q Consensus 106 q~~~l~g~i~it~~~AGHiLGsa~~~I~~~-~~~I~YtgD~s 146 (575)
+.+++.|.+++...+ ||..|++.+.++.+ +.+++|+||..
T Consensus 169 ~~~~l~g~~~v~~~p-GHt~g~~~~~~~~~~~~~~lf~GD~~ 209 (274)
T 3aj3_A 169 GDVDLARGVKLISTP-GHSIGHYSLLVEFPRRKPILFTIDAA 209 (274)
T ss_dssp SSEEEETTEEEEECT-TSSTTCEEEEECCSSSCCEEEEETTC
T ss_pred CccccCCEEEEEECC-CCCceeeEEEEECCCCCEEEEEechh
Confidence 457773338887775 89999999999876 67999999954
No 42
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens}
Probab=83.76 E-value=1.2 Score=43.78 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=38.7
Q ss_pred cceEecCCCEEEeCCceEEEeecC-CccccceEEEEEeCCeeEEEecCCCC
Q 008169 98 KVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGAKGNIAYISGSNF 147 (575)
Q Consensus 98 ~i~~v~y~q~~~l~g~i~it~~~A-GHiLGsa~~~I~~~~~~I~YtgD~s~ 147 (575)
.++.+.-++++.+. +.+++++.. ||..|+..+.+. ..+++|+||...
T Consensus 121 ~~~~~~~g~~~~~g-g~~~~~~~~pGHt~~~~~~~~~--~~~~lftGD~~~ 168 (289)
T 4ad9_A 121 QYVYLKDGDVIKTE-GATLRVLYTPGHTDDHMALLLE--EENAIFSGDCIL 168 (289)
T ss_dssp CEEECCTTCEEEET-TEEEEEEECCSSSTTCEEEEET--TTTEEEEETSSC
T ss_pred ceEEcCCCCEEEeC-CeEEEEEECCCCCCCCEEEEEc--CCCEEEEecccC
Confidence 45778889999996 488888877 999999999884 567999999543
No 43
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A
Probab=83.53 E-value=1.3 Score=41.73 Aligned_cols=32 Identities=3% Similarity=-0.033 Sum_probs=25.5
Q ss_pred ceEEEeecCCccccceEEEEEeCCeeEEEecCCCC
Q 008169 113 ILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNF 147 (575)
Q Consensus 113 ~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s~ 147 (575)
.+++.....||..|+..+.+ ...+++| ||...
T Consensus 140 ~~~v~~~~pGHt~g~~~~~~--~~~~~lf-gD~~~ 171 (233)
T 3q6v_A 140 SIRAMYLGEAHTKDGIFVYF--PAERVLY-GNCIL 171 (233)
T ss_dssp TEEEECCCCSSSSSCCEEEE--TTTTEEE-CTTTS
T ss_pred eEEEEECCCCCCcCcEEEEe--ccCCEEE-Cceec
Confidence 57777777899999998887 4568999 99653
No 44
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana}
Probab=83.16 E-value=1.5 Score=42.32 Aligned_cols=48 Identities=10% Similarity=0.234 Sum_probs=37.4
Q ss_pred ceEecCCCEEEeCCceEEEeecC-CccccceEEEEEeCC----eeEEEecCCCC
Q 008169 99 VQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGAK----GNIAYISGSNF 147 (575)
Q Consensus 99 i~~v~y~q~~~l~g~i~it~~~A-GHiLGsa~~~I~~~~----~~I~YtgD~s~ 147 (575)
...+.-++.+.+. +++++++.. ||..|++.+.++..+ .+++|+||...
T Consensus 93 ~~~~~~g~~~~~g-~~~i~v~~tpGHt~g~~~~~~~~~~~~~~~~~lftGD~~~ 145 (245)
T 2gcu_A 93 DLFLEPGDKVSIG-DIYLEVRATPGHTAGCVTYVTGEGADQPQPRMAFTGDAVL 145 (245)
T ss_dssp SEEECTTCEEEET-TEEEEEEECCSSSTTCEEEEECCSTTSCSSCEEEEETTSB
T ss_pred CEEcCCCCEEEEC-CEEEEEEECCCCCCCCEEEEECCccccccccEEEECCccc
Confidence 3567778889986 478887765 999999999987642 48999999653
No 45
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5
Probab=82.22 E-value=1.4 Score=44.62 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=36.5
Q ss_pred hcceEecCCCEEEeCCceEEEeecCCccccceEEEEEeCCeeEEEecCCCC
Q 008169 97 SKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNF 147 (575)
Q Consensus 97 ~~i~~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s~ 147 (575)
.+++.++-++++ ..++++.+.+ ||..|++.+.++.++++++|+||...
T Consensus 211 ~~~~~~~~g~~i--~~gi~vi~tp-GHtpG~~~~~i~~~~~~vlf~GD~~~ 258 (331)
T 1p9e_A 211 GKFKPFSGNTDL--VPGIKALASH-GHTPGHTTYVVESQGQKLALLGDLIL 258 (331)
T ss_dssp TCBCCBCSSEEC--STTEEEEECT-TSSTTCEEEEEEETTEEEEECTTSCC
T ss_pred CceEEeCCCCEE--cccEEEEEcC-CCChhCEEEEEEECCcEEEEEECccC
Confidence 345556555544 3457877765 99999999999998999999999653
No 46
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Probab=81.77 E-value=2 Score=41.24 Aligned_cols=41 Identities=12% Similarity=0.175 Sum_probs=31.9
Q ss_pred CCEEEeCCceEEEeecCCccccceEEEEEeC-CeeEEEecCCCC
Q 008169 105 GEEACYNGILIIKAFSSGLDIGACNWIISGA-KGNIAYISGSNF 147 (575)
Q Consensus 105 ~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~-~~~I~YtgD~s~ 147 (575)
++...+. ++++...+ ||..|++.+.++.+ +.+++|+||...
T Consensus 157 ~~~~~~~-~i~~~~~p-GHt~g~~~~~~~~~~~~~vl~~GD~~~ 198 (254)
T 3dha_A 157 GDYEVVP-GVQLLYTP-GHSPGHQSLFIETEQSGSVLLTIDASY 198 (254)
T ss_dssp SSEEEET-TEEEEECC-SSSTTCEEEEEEETTTEEEEEEETTCS
T ss_pred CCccccC-CEEEEECC-CCCCCCEEEEEEeCCCCEEEEEecccc
Confidence 3444443 58887766 99999999999886 679999999653
No 47
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A*
Probab=80.70 E-value=1.7 Score=43.04 Aligned_cols=46 Identities=9% Similarity=0.005 Sum_probs=35.9
Q ss_pred ceEecCCCEEEeCCceEEEeecC-CccccceEEEEEeCCeeEEEecCCC
Q 008169 99 VQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGAKGNIAYISGSN 146 (575)
Q Consensus 99 i~~v~y~q~~~l~g~i~it~~~A-GHiLGsa~~~I~~~~~~I~YtgD~s 146 (575)
+..+.-++++.+.++.+++++.. ||..|+..+.+. +.+++|+||..
T Consensus 136 ~~~~~~g~~~~lg~g~~l~~i~~pGHt~g~~~~~~~--~~~~lf~GD~~ 182 (303)
T 2vw8_A 136 VRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDV--RRRRLFCGDAL 182 (303)
T ss_dssp EEEECTTCEEEEETTEEEEEEECTTSSTTCEEEEET--TTTEEEEETTT
T ss_pred ceEcCCCCEEecCCCeEEEEEECCCCCcccEEEEEC--CCCEEEEcCcc
Confidence 35677889999875566666554 999999998874 67899999954
No 48
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A*
Probab=80.64 E-value=1.9 Score=42.05 Aligned_cols=47 Identities=6% Similarity=0.091 Sum_probs=36.4
Q ss_pred ceEecCCCEEEeCCceEEEeecC-CccccceEEEE-Ee--CCeeEEEecCCC
Q 008169 99 VQTLRFGEEACYNGILIIKAFSS-GLDIGACNWII-SG--AKGNIAYISGSN 146 (575)
Q Consensus 99 i~~v~y~q~~~l~g~i~it~~~A-GHiLGsa~~~I-~~--~~~~I~YtgD~s 146 (575)
...+.-++.+.+. +++++++.. ||..|+..+.+ +. ++.+++|+||..
T Consensus 86 ~~~~~~g~~~~~g-~~~~~vi~tPGHt~g~~~~~~~~~~~~~~~~lftGD~l 136 (260)
T 1qh5_A 86 THKITHLSTLQVG-SLNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTL 136 (260)
T ss_dssp SEECCTTCEEEET-TEEEEEEECCSSSTTCEEEEEECSSSSSCCEEEEETTE
T ss_pred CEEeCCCCEEEEC-CEEEEEEECCCCCCCCEEEEEeccCCCCCCEEEEcCcc
Confidence 3566778888885 477777654 99999999998 43 467999999954
No 49
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=80.61 E-value=2.4 Score=45.09 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=37.8
Q ss_pred eEecCCCEEEeCCceEEEeecC-CccccceEEEEEeCCe-----eEEEecCCC
Q 008169 100 QTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGAKG-----NIAYISGSN 146 (575)
Q Consensus 100 ~~v~y~q~~~l~g~i~it~~~A-GHiLGsa~~~I~~~~~-----~I~YtgD~s 146 (575)
+.+.-++++.+. +++++++.. ||..|++.+.+...+. +++||||..
T Consensus 100 ~~~~~g~~~~~g-~~~i~~i~tPGHt~g~~~~~~~~~~~~~~~~~~lftGD~l 151 (474)
T 3tp9_A 100 RLLKDGDELHFG-NVRIVVMHTPGHTPEHVSYLLYDGKTSPDVPMALFSGDFV 151 (474)
T ss_dssp EEECTTCEEEET-TEEEEEEECCSSSSSCEEEEEEETTTEEEEEEEEEEETSE
T ss_pred eECCCCCEEEEC-CEEEEEEECCCCCCCCEEEEEecCCCCCCCceEEEeCCcc
Confidence 567788999986 578877655 9999999999987655 899999954
No 50
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=79.54 E-value=1.8 Score=44.56 Aligned_cols=46 Identities=11% Similarity=0.013 Sum_probs=35.7
Q ss_pred cceEecCCCEEEeCCceEEEeecC--CccccceEEEEEeCCeeEEEecCCC
Q 008169 98 KVQTLRFGEEACYNGILIIKAFSS--GLDIGACNWIISGAKGNIAYISGSN 146 (575)
Q Consensus 98 ~i~~v~y~q~~~l~g~i~it~~~A--GHiLGsa~~~I~~~~~~I~YtgD~s 146 (575)
.+..++-++++.+.+ ++++++++ ||..|+..+.+ .+.+++|+||..
T Consensus 120 ~~~~~~~g~~~~~g~-~~~~~~~~p~gH~~~~~~~~~--~~~~~l~~GD~~ 167 (402)
T 1e5d_A 120 PVQVVKHGETLSLGK-RTVTFYETRMLHWPDSMVSWF--ADEKVLISNDIF 167 (402)
T ss_dssp CEEEECTTCEEECSS-CEEEEEECTTSSSTTCEEEEE--TTTTEEEEETTT
T ss_pred ceEEcCCCCEEEECC-CEEEEEeCCCCCCCCcEEEEE--CCCCEEEecccc
Confidence 346778889999864 67777655 89999998765 567999999963
No 51
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}
Probab=78.43 E-value=2.2 Score=41.56 Aligned_cols=62 Identities=11% Similarity=0.100 Sum_probs=44.8
Q ss_pred CCCEEEeCCceEEEeecCCcccc--------------ceEEEEEeC-CeeEEEecCCCCCCCCCCCCCCCCCCCCcEEEE
Q 008169 104 FGEEACYNGILIIKAFSSGLDIG--------------ACNWIISGA-KGNIAYISGSNFASGHAMDFDYRAIQGSDLILY 168 (575)
Q Consensus 104 y~q~~~l~g~i~it~~~AGHiLG--------------sa~~~I~~~-~~~I~YtgD~s~~~~~~~~~d~~~l~~~DvLI~ 168 (575)
.++++++. +++|++++|-|..| ++.|.|+.+ +.+|+|+||........ +.....++|++++
T Consensus 114 ~~~~~~~~-~~~i~~~pa~H~~~~~~~~p~~~~~~~~~~g~~i~~~~~~~i~~~GDt~~~~~~~---~~~~~~~~Dv~il 189 (264)
T 3rpc_A 114 IFESLEFN-GITLRKTGGSHGTVEMYANPVLAPLAGDAMGVIFEAADEPTVYLVGDTVWTSDVE---KALLRFDPNVIIM 189 (264)
T ss_dssp CSSEEEET-TEEEEEECCCSSCHHHHTSTTHHHHHCCCCEEEEECTTSCCEEECCSCCSCHHHH---HHHHHHCCSEEEE
T ss_pred ecccEEEC-CEEEEEeccccCCccccccccccccccccEEEEEEeCCccEEEEECCcCchHHHH---HHHHHhCCCEEEE
Confidence 36889996 59999999999886 478999987 78999999965321100 0000025899999
Q ss_pred c
Q 008169 169 S 169 (575)
Q Consensus 169 e 169 (575)
+
T Consensus 190 ~ 190 (264)
T 3rpc_A 190 N 190 (264)
T ss_dssp E
T ss_pred e
Confidence 8
No 52
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=78.04 E-value=2.5 Score=39.69 Aligned_cols=44 Identities=7% Similarity=-0.085 Sum_probs=35.3
Q ss_pred eEecCCCEEEeCCceEEEee--cCCccccceEEEEEeCCeeEEEecCCC
Q 008169 100 QTLRFGEEACYNGILIIKAF--SSGLDIGACNWIISGAKGNIAYISGSN 146 (575)
Q Consensus 100 ~~v~y~q~~~l~g~i~it~~--~AGHiLGsa~~~I~~~~~~I~YtgD~s 146 (575)
..+.-++.+.+. +.+++++ ..||..|+..+.+ .+.+++|+||..
T Consensus 111 ~~~~~g~~~~~g-~~~i~~~~~~pgHt~~~~~~~~--~~~~~lf~GD~~ 156 (223)
T 1m2x_A 111 YTFDNNKSFKVG-KSEFQVYYPGKGHTADNVVVWF--PKEKVLVGGCII 156 (223)
T ss_dssp EEESSCEEEEET-TEEEEEECCCSSSSSSCCEEEE--TTTTEEEEETTS
T ss_pred eecCCCceEEEC-CEEEEEEecCCCCCCCCEEEEE--CCCCEEEEeccc
Confidence 456678888885 5889987 5899999999887 457899999943
No 53
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A
Probab=75.87 E-value=2.6 Score=40.89 Aligned_cols=44 Identities=9% Similarity=0.156 Sum_probs=34.8
Q ss_pred eEecCCCEEEeCCceEEEeec-CCccccceEEEEEeCCeeEEEecCCC
Q 008169 100 QTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGAKGNIAYISGSN 146 (575)
Q Consensus 100 ~~v~y~q~~~l~g~i~it~~~-AGHiLGsa~~~I~~~~~~I~YtgD~s 146 (575)
..+.-++.+.+. +.+++++. .||..|+..+.++ +.+++|+||..
T Consensus 89 ~~~~~g~~~~lg-~~~~~vi~tPGHt~g~~~~~~~--~~~~lftGD~l 133 (254)
T 1xm8_A 89 MALKDGDKWMFA-GHEVHVMDTPGHTKGHISLYFP--GSRAIFTGDTM 133 (254)
T ss_dssp EEECTTCEEEET-TEEEEEEECCSSSSSCEEEEEG--GGTEEEEETTE
T ss_pred eeeCCCCEEEEC-CEEEEEEECCCCCCCcEEEEEC--CCCEEEEcCcc
Confidence 457778888886 47777766 4999999999874 46899999954
No 54
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2
Probab=74.77 E-value=2.9 Score=40.69 Aligned_cols=44 Identities=9% Similarity=0.107 Sum_probs=34.4
Q ss_pred cceEecCCCEEEeCCceEEEeecC-CccccceEEEEEeCCeeEEEecCCC
Q 008169 98 KVQTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISGAKGNIAYISGSN 146 (575)
Q Consensus 98 ~i~~v~y~q~~~l~g~i~it~~~A-GHiLGsa~~~I~~~~~~I~YtgD~s 146 (575)
....+.-++++.+. +.+++++.. ||..|+..+. +.+++|+||..
T Consensus 92 ~~~~~~~g~~~~~g-~~~~~vi~tPGHt~g~~~~~----~~~~lftGD~l 136 (258)
T 2qed_A 92 ATHLVGDGDTIRVL-GEKFTLFATPGHTLGHVCYF----SRPYLFCGDTL 136 (258)
T ss_dssp CSEECCTTCEEEET-TEEEEEEECCSSSTTCEEEE----ETTEEEEETTE
T ss_pred CcEEeCCCCEEEEC-CcEEEEEECCCCCCCCeEEE----cCCEEEECCCC
Confidence 34567778889985 477777665 9999999887 46899999954
No 55
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=74.41 E-value=3.2 Score=39.25 Aligned_cols=45 Identities=7% Similarity=-0.014 Sum_probs=35.2
Q ss_pred eEecCCCEEEeCCceEEEeec--CCccccceEEEEEeCCeeEEEecCCCC
Q 008169 100 QTLRFGEEACYNGILIIKAFS--SGLDIGACNWIISGAKGNIAYISGSNF 147 (575)
Q Consensus 100 ~~v~y~q~~~l~g~i~it~~~--AGHiLGsa~~~I~~~~~~I~YtgD~s~ 147 (575)
..+.-++.+.+. +.+++++. .||..|+..+.+. ..+++|+||...
T Consensus 121 ~~~~~g~~~~~g-~~~i~~~~~~pgHt~g~~~~~~~--~~~~lf~GD~~~ 167 (232)
T 1a7t_A 121 HGFTDSLTVSLD-GMPLQCYYLGGGHATDNIVVWLP--TENILFGGCMLK 167 (232)
T ss_dssp EEESSEEEEEET-TEEEEEECCCCSSSTTCCEEEET--TTTEEEEETTSC
T ss_pred eecCCCCEEEEC-CeEEEEEeCCCCCCCCCEEEEEC--CCCEEEEcCccc
Confidence 456667788885 57888874 8999999998873 568999999643
No 56
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=73.78 E-value=4.8 Score=42.78 Aligned_cols=49 Identities=6% Similarity=0.137 Sum_probs=38.9
Q ss_pred cceEecCCCEEEeCCceEEEeec-CCccccceEEEEEeC-----CeeEEEecCCCC
Q 008169 98 KVQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIISGA-----KGNIAYISGSNF 147 (575)
Q Consensus 98 ~i~~v~y~q~~~l~g~i~it~~~-AGHiLGsa~~~I~~~-----~~~I~YtgD~s~ 147 (575)
....+.-++++.+. +++++++. -||..|+..+.+... +.+++||||..+
T Consensus 118 ~~~~~~~g~~l~~g-~~~l~vi~tPGHT~g~~~~~~~~~~~~~~~~~~lftGD~lf 172 (466)
T 3r2u_A 118 HTHFVQHNDDIYVG-NIKLKVLHTPGHTPESISFLLTDEGAGAQVPMGLFSGDFIF 172 (466)
T ss_dssp TCEEECTTCEEEET-TEEEEEEECCSSSTTCEEEEEECGGGTCCSCCEEEEETTBC
T ss_pred CCEEeCCCCEEEEC-CEEEEEEECCCCCCCCEEEEEcCCCccCCCceEEEECCccc
Confidence 45678889999996 57888776 489999999999863 456999999653
No 57
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=73.61 E-value=2.7 Score=43.34 Aligned_cols=46 Identities=7% Similarity=-0.011 Sum_probs=36.1
Q ss_pred cceEecCCCEEEeCCceEEEeecC--CccccceEEEEEeCCeeEEEecCCC
Q 008169 98 KVQTLRFGEEACYNGILIIKAFSS--GLDIGACNWIISGAKGNIAYISGSN 146 (575)
Q Consensus 98 ~i~~v~y~q~~~l~g~i~it~~~A--GHiLGsa~~~I~~~~~~I~YtgD~s 146 (575)
.+..++-++++.+. +.+++++++ ||..|+..+.+. +.+++|+||..
T Consensus 125 ~~~~~~~g~~~~~g-~~~i~~~~~p~gH~~~~~~~~~~--~~~~lf~GD~~ 172 (404)
T 2ohh_A 125 EFMTVKTGDVLDLG-GKTLTFLETPLLHWPDSMFTLLD--EDGILFSNDAF 172 (404)
T ss_dssp CEEECCTTCEEECS-SCEEEEEECTTSSSTTCEEEEEE--TTTEEECTTTT
T ss_pred CceEcCCCCEEEEC-CEEEEEEeCCCCCCCCceEEEEC--CCcEEEecCcc
Confidence 34667788899986 467777766 899999998874 46899999954
No 58
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}
Probab=71.28 E-value=3.5 Score=40.06 Aligned_cols=52 Identities=8% Similarity=-0.070 Sum_probs=40.3
Q ss_pred ccCCChhhHHHHHhhcCCCEEEEecCCccc-----ccccc----cCCc--eeeecCCCcEEEe
Q 008169 382 LSGKKLQKVQPLLKILQPKLVLFPEEWRTH-----VSFSD----VTSF--SVSHYSENETIHI 433 (575)
Q Consensus 382 saHaD~~~l~~~i~~~~P~~vilvHGe~~~-----~~~l~----~~~~--~v~~p~~~e~i~l 433 (575)
..|.+.++..++++.++|++++++|=..-. .+.++ +.++ ++..|+.||++++
T Consensus 202 ~~hm~~~ea~~~~~~l~~~~vi~~H~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Ge~~~l 264 (264)
T 3rpc_A 202 SIIMGTKDIGRMVVRKPEAKIIAVHMDTVNHTATSRKDVRKFIKGNNIESHVAVPEDGETITL 264 (264)
T ss_dssp CSSCCHHHHHHHHHHCTTSEEEEESCSSSTTBCSCHHHHHHHHHHTTCTTTEECCCTTCEEEC
T ss_pred CcccCHHHHHHHHHhCCcCeEEEEccccccccccCHHHHHHHHHHcCCCCcEEecCCCCEEeC
Confidence 569999999999999999999999976421 22222 3444 7899999999875
No 59
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ...
Probab=71.25 E-value=3.4 Score=38.86 Aligned_cols=43 Identities=12% Similarity=0.021 Sum_probs=33.0
Q ss_pred EecCCCEEEeCCceEEEee--cCCccccceEEEEEeCCeeEEEecCCC
Q 008169 101 TLRFGEEACYNGILIIKAF--SSGLDIGACNWIISGAKGNIAYISGSN 146 (575)
Q Consensus 101 ~v~y~q~~~l~g~i~it~~--~AGHiLGsa~~~I~~~~~~I~YtgD~s 146 (575)
.+.-++.+.+. +++++++ ..||..|+..+.+ ++.+++|+||..
T Consensus 126 ~~~~~~~~~~g-~~~i~~~~~~pgHt~g~~~~~~--~~~~~lf~GD~~ 170 (227)
T 1mqo_A 126 DLQTVTNLKFG-NMKVETFYPGKGHTEDNIVVWL--PQYNILVGGCLV 170 (227)
T ss_dssp CBCSEEEEEET-TEEEEEECCCCSSSSSCCEEEE--TTTTEEEEETTS
T ss_pred ccCCCCeeeEC-CEEEEEEecCCCCCCCCEEEEE--CCCCEEEEeeee
Confidence 34445677885 5888875 4799999999887 457899999954
No 60
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A*
Probab=69.55 E-value=3.1 Score=42.59 Aligned_cols=59 Identities=10% Similarity=-0.069 Sum_probs=45.4
Q ss_pred ccCCChhhHHHHHhhcCCCEEEEecCCccc-----ccccc---c-------CCceeeecCCCcEEEeCCCCeeE
Q 008169 382 LSGKKLQKVQPLLKILQPKLVLFPEEWRTH-----VSFSD---V-------TSFSVSHYSENETIHIPSLKESA 440 (575)
Q Consensus 382 saHaD~~~l~~~i~~~~P~~vilvHGe~~~-----~~~l~---~-------~~~~v~~p~~~e~i~l~~~~~~~ 440 (575)
..|++..+..++++.++|+.++++|...-. .+.+. + .+.+++.++.|++++++..++.+
T Consensus 257 ~~h~~~~ea~~~~~~l~~k~vi~~H~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Ge~~~l~~d~~~~ 330 (360)
T 2wyl_A 257 TDKMTSADMLRMGEALNAKVVIPFHHDIWSNFQADPQEIRVLWEMKKDRLKYGFKPFIWQVGGKFTWPLDKDNF 330 (360)
T ss_dssp CCSBCHHHHHHHHHHHTCSEEEEESTTTBGGGCCCTHHHHHHHHHHTTTTTCCCEECBCCTTCEEEETTTTTCC
T ss_pred cCCCCHHHHHHHHHHhCCCEEEEEeeccccccCCCHHHHHHHHHhhhhhhcCCcceEEccCCcEEEecCCCCce
Confidence 469999999999999999999999976431 11221 1 14578999999999999877643
No 61
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=68.19 E-value=4.7 Score=41.36 Aligned_cols=45 Identities=2% Similarity=-0.126 Sum_probs=34.4
Q ss_pred ceEecCCCEEEeCCceEEEeec--CCccccceEEEEEeCCeeEEEecCCC
Q 008169 99 VQTLRFGEEACYNGILIIKAFS--SGLDIGACNWIISGAKGNIAYISGSN 146 (575)
Q Consensus 99 i~~v~y~q~~~l~g~i~it~~~--AGHiLGsa~~~I~~~~~~I~YtgD~s 146 (575)
++.++-++++.+. +.++++++ .||..|+..+.+ .+.+++|+||..
T Consensus 122 ~~~~~~g~~~~~g-~~~~~~~~~p~gH~~~~~~~~~--~~~~~lf~GD~~ 168 (398)
T 1ycg_A 122 YTIVKTGTSVSLG-KRSLTFIEAPMLHWPDSMFTYV--PEEALLLPNDAF 168 (398)
T ss_dssp EEECCTTCEEECS-SCEEEEEECTTSSSTTCEEEEE--TTTTEEEEETTT
T ss_pred eEEeCCCCEEeeC-CcEEEEEeCCCCCCCCcEEEEE--CCCcEEEecccc
Confidence 4567778899986 46676664 489999988765 567999999963
No 62
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor}
Probab=66.62 E-value=3.8 Score=42.28 Aligned_cols=58 Identities=10% Similarity=-0.071 Sum_probs=44.7
Q ss_pred ccCCChhhHHHHHhhcCCCEEEEecCCccc-----ccccc---c-------CCceeeecCCCcEEEeCCCCee
Q 008169 382 LSGKKLQKVQPLLKILQPKLVLFPEEWRTH-----VSFSD---V-------TSFSVSHYSENETIHIPSLKES 439 (575)
Q Consensus 382 saHaD~~~l~~~i~~~~P~~vilvHGe~~~-----~~~l~---~-------~~~~v~~p~~~e~i~l~~~~~~ 439 (575)
..|++..+..++++.++|+.++++|...-. .+.++ + .+.+++.++.|+++++|..++.
T Consensus 282 ~~h~~~~ea~~~~~~l~~k~vi~~H~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~d~~~ 354 (379)
T 3bv6_A 282 TDKMTSSDVLRAAESLDCQVVVPFHHDIWANFQNDPREIEVLWNMKKDRLQYQFAPFFWQVGGKYTYPTDKGR 354 (379)
T ss_dssp CCSBCHHHHHHHHHHHTCSEEEEESTTSBGGGCCCTHHHHHHHHHHTTTTTCCCEECBCCTTCEEEETTTTTC
T ss_pred cccCCHHHHHHHHHHcCCCEEEEEeecccccccCCHHHHHHHHHhhhhhhcCCCceEEccCCcEEEecCCCCc
Confidence 569999999999999999999999976431 11221 1 1457899999999999877653
No 63
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A
Probab=65.10 E-value=3.9 Score=37.85 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=29.3
Q ss_pred EecCCCEEEeCCceEEEeecCCccccceEEEEEeCCeeEEEecCCC
Q 008169 101 TLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSN 146 (575)
Q Consensus 101 ~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s 146 (575)
.++-++.+. .+++... .||..|+..+.++ +.+++|+||..
T Consensus 107 ~~~~g~~i~---~~~~~~~-pGHt~g~~~~~~~--~~~~lf~GD~~ 146 (207)
T 2zwr_A 107 PLEEGMRLF---GFQVLHL-PGHSPGHVAFYDP--EGAQVFSGDLL 146 (207)
T ss_dssp ECCTTCEET---TEEEEEC-CSSSTTCEEEEET--TTTEEEEETSE
T ss_pred EeCCCCEEE---EEEEEeC-CCCCCCcEEEEEC--CCCEEEEeccc
Confidence 444555543 4777665 4899999999874 67999999954
No 64
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12
Probab=63.64 E-value=4.4 Score=37.45 Aligned_cols=41 Identities=12% Similarity=0.050 Sum_probs=31.2
Q ss_pred EecCCCEEEeCCceEEEeecCCccccceEEEEEeCCeeEEEecCCC
Q 008169 101 TLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSN 146 (575)
Q Consensus 101 ~v~y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s 146 (575)
.++-++.+ .+.+++...++||..|+..+.++ + +++|+||..
T Consensus 99 ~~~~g~~~--~~~~~~~~~p~gHt~g~~~~~~~--~-~~lf~GD~~ 139 (201)
T 2p97_A 99 WLSDGDEL--VPGLKVMELQGSKTPGELALLLE--E-TTLITGDLV 139 (201)
T ss_dssp EECTTCBS--STTEEEEEECSSSSTTEEEEEET--T-TEEEECSSE
T ss_pred ecCCCCEE--cceEEEEECCCCCCCCcEEEEEc--C-CEEEECccc
Confidence 34444443 33688888999999999998876 4 899999954
No 65
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural GE consortium, NESG, NSR435A, DFA5, electron transport; 1.80A {Nostoc SP} PDB: 4fek_A
Probab=63.23 E-value=7.8 Score=37.39 Aligned_cols=46 Identities=13% Similarity=-0.041 Sum_probs=33.6
Q ss_pred cceEecCCCEEEeCCceEEEee--cCCccccceEEEEEeCCeeEEEecCC
Q 008169 98 KVQTLRFGEEACYNGILIIKAF--SSGLDIGACNWIISGAKGNIAYISGS 145 (575)
Q Consensus 98 ~i~~v~y~q~~~l~g~i~it~~--~AGHiLGsa~~~I~~~~~~I~YtgD~ 145 (575)
.++.++-++++++.++.+++++ +.+|..|+..+.+ .+.+++|+||.
T Consensus 128 ~~~~~~~g~~l~lg~~~~~~~i~tpg~Ht~g~~~~~~--~~~~~lfsGD~ 175 (262)
T 3hnn_A 128 NILPMRGKETLDLGKGHVLKFLPIPSPRWPAGLCTYD--VQTQILYTDKI 175 (262)
T ss_dssp EEEECCSSCEEECSTTCEEEEEECCCSSCTTCEEEEE--TTTTEEEEETT
T ss_pred ceEEeCCCCEEEcCCCcEEEEEECCCCCCCCeeEEEe--CCCCEEEEeec
Confidence 4567888999999634455554 4339999987764 56789999995
No 66
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Probab=59.42 E-value=7.9 Score=37.45 Aligned_cols=41 Identities=2% Similarity=-0.103 Sum_probs=31.5
Q ss_pred CCCEEEeCCceEEEeecCCccccceEEEEEeCCeeEEEecCCCC
Q 008169 104 FGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNF 147 (575)
Q Consensus 104 y~q~~~l~g~i~it~~~AGHiLGsa~~~I~~~~~~I~YtgD~s~ 147 (575)
-++++.+. ++++.....||..|+..+.++ +.+++|+||...
T Consensus 160 ~~~~~~~g-~~~v~~~~pGHt~g~~~~~~~--~~~~lf~GD~~~ 200 (265)
T 2y8b_A 160 SGDVVRFG-PVEVFYPGAAHSGDNLVVYVP--AVRVLFGGCAVH 200 (265)
T ss_dssp TTEEEEET-TEEEEECCSSSSTTCCEEEET--TTTEEEEETTSC
T ss_pred CCcEEeec-CEEEEecCCCCCCCCEEEEec--CCCEEEEccccc
Confidence 34566664 588876778999999998874 568999999653
No 67
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A
Probab=57.33 E-value=19 Score=34.45 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=32.5
Q ss_pred eEecCCCEEEeCCceEEEeecC-CccccceEEEEEe--CCe-eEEEecCCC
Q 008169 100 QTLRFGEEACYNGILIIKAFSS-GLDIGACNWIISG--AKG-NIAYISGSN 146 (575)
Q Consensus 100 ~~v~y~q~~~l~g~i~it~~~A-GHiLGsa~~~I~~--~~~-~I~YtgD~s 146 (575)
+.++-++++.+. +++++++.. ||..|+..+.++. ++. +.+++||..
T Consensus 137 ~~~~~g~~~~~g-~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~l~~gD~l 186 (269)
T 1sml_A 137 RIVMDGEVITVG-GIVFTAHFMAGHTPGSTAWTWTDTRNGKPVRIAYADSL 186 (269)
T ss_dssp EECCTTCEEEET-TEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEECCCC
T ss_pred eEeCCCCEEEEC-CEEEEEEECCCCCcccEEEEEecccCCceeEEEEeccc
Confidence 456778889985 578877654 8999999998875 232 344448854
No 68
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503}
Probab=45.98 E-value=31 Score=32.59 Aligned_cols=38 Identities=8% Similarity=0.024 Sum_probs=29.8
Q ss_pred eecccCCChhhHHHHHhhcCCCEEEEecCCcccccccc
Q 008169 379 CSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSD 416 (575)
Q Consensus 379 ~~fsaHaD~~~l~~~i~~~~P~~vilvHGe~~~~~~l~ 416 (575)
+.-..|.+.++..++++.++|++++++|=.....+.++
T Consensus 182 ~~~~~h~~~~ea~~~~~~l~~k~vip~H~~~~~~~~~~ 219 (235)
T 3kl7_A 182 VNQPYTMTVSQAAKAARMFSPKILYPYHYGDTKIGELK 219 (235)
T ss_dssp CCTTTSCCHHHHHHHHHHHCCSEEEEESCTTCCTTHHH
T ss_pred CCCCcccCHHHHHHHHHHcCCCEEEEEcCCCCCHHHHH
Confidence 33457999999999999999999999997664434443
No 69
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Probab=40.37 E-value=38 Score=36.33 Aligned_cols=66 Identities=9% Similarity=0.030 Sum_probs=43.9
Q ss_pred ecCCCEEEeCCceEEEeec---CCc-----------cccceEEEEEeCCeeEEEecCCCCCCCCCCCCCCCCCCCCcEEE
Q 008169 102 LRFGEEACYNGILIIKAFS---SGL-----------DIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLIL 167 (575)
Q Consensus 102 v~y~q~~~l~g~i~it~~~---AGH-----------iLGsa~~~I~~~~~~I~YtgD~s~~~~~~~~~d~~~l~~~DvLI 167 (575)
+.-++.+.+. +++|++++ +.| --+|+.+.|+.++.+++|+||..........+ ...+..+|+|+
T Consensus 148 ~~~g~~~~~g-~~~i~~l~~~~~~h~~~~~~~~~~~n~~S~vl~i~~~~~~iLftGD~~~~~~~e~~l-~~~~~~~DvLk 225 (547)
T 2bib_A 148 TQGDAHFQFG-DMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNGKKIYLGGDLDNVHGAEDKY-GPLIGKVDLMK 225 (547)
T ss_dssp CTTTTEEEET-TEEEEEESCSCCBCTTSCBCCBSSGGGGCCEEEEEETTEEEEECTTCCSTTSHHHHH-HHHHCCCSEEE
T ss_pred cCCCceEecC-CeeEEEecCccccCccccccccCCCCCCcEEEEEEECCEEEEecCCccchhhhhhhh-cccccceeEEE
Confidence 3556788886 58998886 333 36789999999999999999976421000000 01124789998
Q ss_pred Ec
Q 008169 168 YS 169 (575)
Q Consensus 168 ~e 169 (575)
+.
T Consensus 226 v~ 227 (547)
T 2bib_A 226 FN 227 (547)
T ss_dssp CT
T ss_pred ec
Confidence 75
No 70
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A
Probab=34.41 E-value=32 Score=32.78 Aligned_cols=52 Identities=8% Similarity=-0.010 Sum_probs=38.7
Q ss_pred ccCCChhhHHHHHhhcCCCEEEEecCCcccc---cccc----c--CCceeeecCCCcEEEe
Q 008169 382 LSGKKLQKVQPLLKILQPKLVLFPEEWRTHV---SFSD----V--TSFSVSHYSENETIHI 433 (575)
Q Consensus 382 saHaD~~~l~~~i~~~~P~~vilvHGe~~~~---~~l~----~--~~~~v~~p~~~e~i~l 433 (575)
..|+...++.+++++++++++++.|=..... ..+. + .+.++..+..|++++|
T Consensus 220 ~~H~t~~~a~~~~~~~~~~~lvl~H~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~G~~~~~ 280 (280)
T 2e7y_A 220 KNHAAIDEVMESVKAAGVKKVILYHISTRYIRQLKSVIKKYREEMPDVEILYMDPRKVFEM 280 (280)
T ss_dssp -CCCBHHHHHHHHHHHTCCEEEEESCCGGGHHHHHHHHHHHHHHCTTSEEEECCTTSCEEC
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEEeecCcCcchHHHHHHHHHHhCCCceEEEeCCCceeeC
Confidence 4799999999999999999999999766432 1111 1 3567888888887764
No 71
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A*
Probab=33.74 E-value=38 Score=33.00 Aligned_cols=54 Identities=13% Similarity=0.024 Sum_probs=39.4
Q ss_pred cccCCChhhHHHHHhhcCCCEEEEecCCcccc-cccc-cCCceeeecCCCcEEEeC
Q 008169 381 FLSGKKLQKVQPLLKILQPKLVLFPEEWRTHV-SFSD-VTSFSVSHYSENETIHIP 434 (575)
Q Consensus 381 fsaHaD~~~l~~~i~~~~P~~vilvHGe~~~~-~~l~-~~~~~v~~p~~~e~i~l~ 434 (575)
-..|++..+..+++++++|++++++|=..... ..++ +....+.....|.+|++|
T Consensus 237 ~~~H~~~~~a~~~~~~~~~k~lvl~H~~~~~~~~~~~~~~~~~v~~a~DG~~i~l~ 292 (293)
T 3md7_A 237 HPSHFSLGEALEWIEKLSPKRAILTHMHVPLDYETVMRETPHHVEPGYDGLRFEVA 292 (293)
T ss_dssp BTTBCCHHHHHHHHHHHCCSEEEEESBCTTCCHHHHHHHSCTTEEECCTTCEEEEC
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHhhcCCCcEEeeCCcEEEec
Confidence 46799999999999999999999999765421 1111 223356777778888775
No 72
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A*
Probab=33.36 E-value=38 Score=33.23 Aligned_cols=58 Identities=7% Similarity=-0.132 Sum_probs=41.7
Q ss_pred cccCCChhhHHHHHhhcCCCEEEEecCCccccc----ccc----cCCceeeecCCCcEEEeCCCCe
Q 008169 381 FLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVS----FSD----VTSFSVSHYSENETIHIPSLKE 438 (575)
Q Consensus 381 fsaHaD~~~l~~~i~~~~P~~vilvHGe~~~~~----~l~----~~~~~v~~p~~~e~i~l~~~~~ 438 (575)
-..|+...+..+++++.++++++++|=...... .+. +....+..+..|++++++....
T Consensus 244 ~~~H~t~~~a~~~a~~~~~~~lil~H~s~~~~~~~~~~~~~e~~~~~~~~~~a~dg~~~~l~~~~~ 309 (320)
T 1y44_A 244 DYYHSTTEQAAVTAKEARAKQLILTHISARYQGDASLELQKEAVDVFPNSVAAYDFLEVNVPRGKL 309 (320)
T ss_dssp HTTCCBHHHHHHHHHHHTCSEEEEECBCTTSCTTHHHHHHHHHHHHCSSEEECCTTCEEECCCC--
T ss_pred hcCCCCHHHHHHHHHHcCCCEEEEEeEcCCCCCcchHHHHHHHHHhCCCcEeccCCCEEEecchhh
Confidence 357999999999999999999999997653221 121 1112578889999999986544
No 73
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A
Probab=32.76 E-value=21 Score=33.29 Aligned_cols=38 Identities=8% Similarity=-0.125 Sum_probs=26.3
Q ss_pred CEEEeCCceEEEe--ecCCccccceEEEEEeCCeeEEEecCCC
Q 008169 106 EEACYNGILIIKA--FSSGLDIGACNWIISGAKGNIAYISGSN 146 (575)
Q Consensus 106 q~~~l~g~i~it~--~~AGHiLGsa~~~I~~~~~~I~YtgD~s 146 (575)
+.+.+.+ ..+++ .-.||..|+..+.+. +.+++|+||..
T Consensus 121 ~~~~l~~-~~i~~~~~~pGHt~g~~~~~~~--~~~~lf~GD~~ 160 (228)
T 1jjt_A 121 VNYWLVK-NKIEVFYPGPGHTPDNVVVWLP--ERKILFGGCFI 160 (228)
T ss_dssp SCCEEET-TTEEEECCCCSSSTTCCEEEET--TTTEEEEETTC
T ss_pred cceEecC-ceEEEEecCCCCCCCcEEEEEC--CCcEEEEeccc
Confidence 3344433 34444 356999999998874 56899999965
No 74
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9
Probab=25.30 E-value=77 Score=30.03 Aligned_cols=50 Identities=12% Similarity=-0.081 Sum_probs=34.8
Q ss_pred cCCChhhHHHHHhhcCCCEEEEecCCccc-ccccc-----cCCceeeecCCCcEEE
Q 008169 383 SGKKLQKVQPLLKILQPKLVLFPEEWRTH-VSFSD-----VTSFSVSHYSENETIH 432 (575)
Q Consensus 383 aHaD~~~l~~~i~~~~P~~vilvHGe~~~-~~~l~-----~~~~~v~~p~~~e~i~ 432 (575)
.|....++.+++++.+|+++++.|-.+.. ...+. ..+-++..+..|++++
T Consensus 212 ~H~~~~~a~~~~~~~~~~~lil~H~~~~~~~~~~~~~~~~~~~~~v~~a~dg~~~~ 267 (268)
T 1zkp_A 212 GHMNSTEVASIAKDANVKELLLTHLPHTGNPADLVTEAKQIFSGHITLAHSGYVWN 267 (268)
T ss_dssp TCCBHHHHHHHHHHTTCSEEEEESBCSSSCTHHHHHHHHTTCCSEEEECCTTCEEE
T ss_pred CCCCHHHHHHHHHHcCCCEEEEECCCCCCChHHHHHHHHHhCCCCEEEEeCCcccc
Confidence 49999999999999999999999976532 11111 1233566666666653
No 75
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens}
Probab=23.13 E-value=1.1e+02 Score=31.06 Aligned_cols=57 Identities=14% Similarity=0.032 Sum_probs=39.5
Q ss_pred ccCCChhhHHHHHhhcCCCEEEEecCCcccc-------------cccc-c--C---CceeeecCCCcEEEeCCCCe
Q 008169 382 LSGKKLQKVQPLLKILQPKLVLFPEEWRTHV-------------SFSD-V--T---SFSVSHYSENETIHIPSLKE 438 (575)
Q Consensus 382 saHaD~~~l~~~i~~~~P~~vilvHGe~~~~-------------~~l~-~--~---~~~v~~p~~~e~i~l~~~~~ 438 (575)
..|+...+..++.+..++++++++|=.+... ..+. + . +.+++..+.|++++||...+
T Consensus 287 ~~H~t~~~A~~~a~~~~~k~lil~H~s~ry~~~~~~~~~~~~~~~~~~~ea~~~f~~~~~~~a~dg~~~~i~~~~~ 362 (368)
T 3zwf_A 287 HGHSTPQMAATFAKLCRAKRLVLTHFSQRYKPVALAREGETDGIAELKKQAESVLDLQEVTLAEDFMVISIPIKKA 362 (368)
T ss_dssp TTCCCHHHHHHHHHHTTCSEEEEECBCCCC---------------------------CEEEECCTTCEEECCC---
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeeCcccCccccccccccchHHHHHHHHHHhcCCCceEEecCCcEEEeecCcc
Confidence 4599999999999999999999999665432 2232 1 1 22588889999999987544
No 76
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=23.10 E-value=47 Score=28.48 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCeEEEecCChhHHHHHHHHHHHHHH
Q 008169 213 AFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFME 251 (575)
Q Consensus 213 ~~l~~~I~~tl~~GG~VLIP~fa~GR~qELl~~L~~~~~ 251 (575)
.+++..+.+.|+.||.+++-.+......++...+..+|.
T Consensus 116 ~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
T 1ej0_A 116 ELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFT 154 (180)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHHEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHhhh
Confidence 457788899999999999988888888888888777643
No 77
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=23.03 E-value=47 Score=29.55 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCeEEEecCChhHHHHHHHHHHHHH
Q 008169 213 AFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFM 250 (575)
Q Consensus 213 ~~l~~~I~~tl~~GG~VLIP~fa~GR~qELl~~L~~~~ 250 (575)
..++..+.+.|+.||.+++-.+......+++..+..++
T Consensus 125 ~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f 162 (196)
T 2nyu_A 125 LTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEF 162 (196)
T ss_dssp HHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHHE
T ss_pred HHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHHh
Confidence 45777889999999999999888777788887776653
No 78
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=22.01 E-value=33 Score=31.23 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCeEEEecCChhHHHHHHHHHHHH
Q 008169 213 AFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIF 249 (575)
Q Consensus 213 ~~l~~~I~~tl~~GG~VLIP~fa~GR~qELl~~L~~~ 249 (575)
...++.+.+.|+.||..++-+|..+..++++..|..+
T Consensus 119 ~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~ 155 (191)
T 3dou_A 119 QRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKN 155 (191)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHh
Confidence 4566778899999999999999998888888887654
No 79
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=20.26 E-value=86 Score=25.05 Aligned_cols=28 Identities=11% Similarity=0.050 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEecCC
Q 008169 208 EMEKLAFICSCAIDSVKAGGSVLIPINR 235 (575)
Q Consensus 208 ~~e~l~~l~~~I~~tl~~GG~VLIP~fa 235 (575)
-...++.|++.|.++|.+|+.|-||-|-
T Consensus 24 ~~~~v~~~~~~i~~~L~~g~~V~l~gfG 51 (93)
T 3rhi_A 24 ATVVVQTVVESITNTLAAGEKVQLIGFG 51 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEETTTE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEcCCE
Confidence 3456788999999999999999998763
Done!