Query 008170
Match_columns 575
No_of_seqs 545 out of 3096
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 20:22:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008170.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008170hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0154 GatA Asp-tRNAAsn/Glu-t 100.0 1.7E-91 3.7E-96 734.2 34.8 423 21-467 8-468 (475)
2 PLN02722 indole-3-acetamide am 100.0 2.8E-90 6E-95 719.6 38.8 417 45-465 3-421 (422)
3 TIGR02715 amido_AtzE amidohydr 100.0 3.9E-90 8.4E-95 729.8 33.2 407 27-465 12-447 (452)
4 PRK09201 amidase; Provisional 100.0 6.6E-90 1.4E-94 729.8 33.5 407 27-465 19-454 (465)
5 PRK06102 hypothetical protein; 100.0 6.2E-89 1.3E-93 719.8 34.6 414 27-467 18-450 (452)
6 PRK06169 putative amidase; Pro 100.0 6.3E-89 1.4E-93 723.2 32.8 416 21-465 8-455 (466)
7 PRK07056 amidase; Provisional 100.0 8.6E-89 1.9E-93 719.1 33.5 415 27-467 18-452 (454)
8 PRK07487 amidase; Provisional 100.0 1E-88 2.2E-93 721.4 34.1 422 17-467 5-458 (469)
9 PRK05962 amidase; Validated 100.0 6.2E-88 1.4E-92 706.5 33.7 405 36-467 2-422 (424)
10 PRK07486 amidase; Provisional 100.0 6.7E-88 1.5E-92 718.7 33.6 421 19-465 11-470 (484)
11 PRK07042 amidase; Provisional 100.0 6.7E-88 1.4E-92 715.0 32.5 414 21-466 8-452 (464)
12 PRK06170 amidase; Provisional 100.0 1E-87 2.2E-92 719.1 32.5 422 16-467 8-483 (490)
13 PRK12470 amidase; Provisional 100.0 8.4E-88 1.8E-92 712.3 30.9 419 17-465 6-451 (462)
14 TIGR00132 gatA glutamyl-tRNA(G 100.0 1E-87 2.2E-92 714.4 30.0 416 27-464 8-459 (460)
15 PRK08310 amidase; Provisional 100.0 1.3E-86 2.9E-91 690.2 37.4 390 46-465 4-393 (395)
16 PRK07488 indole acetimide hydr 100.0 4.7E-87 1E-91 710.0 34.8 421 16-466 7-465 (472)
17 PRK07235 amidase; Provisional 100.0 2E-86 4.4E-91 705.3 39.0 418 27-465 36-500 (502)
18 PRK00012 gatA aspartyl/glutamy 100.0 2.2E-87 4.8E-92 711.5 30.6 414 27-463 4-459 (459)
19 PRK06061 amidase; Provisional 100.0 1.8E-86 3.9E-91 706.0 33.2 408 27-465 30-467 (483)
20 PRK06529 amidase; Provisional 100.0 2.7E-86 5.9E-91 706.0 34.0 411 27-465 16-477 (482)
21 PRK07869 amidase; Provisional 100.0 2.1E-86 4.6E-91 705.0 32.6 422 15-465 10-461 (468)
22 PRK08186 allophanate hydrolase 100.0 1.1E-85 2.4E-90 709.9 32.6 410 27-466 19-448 (600)
23 PRK08137 amidase; Provisional 100.0 2.5E-85 5.4E-90 701.2 32.3 409 20-466 6-483 (497)
24 PRK07139 amidase; Provisional 100.0 6.3E-82 1.4E-86 662.6 36.3 389 46-467 17-434 (439)
25 TIGR02713 allophanate_hyd allo 100.0 4.2E-82 9E-87 675.1 32.8 389 50-466 2-411 (561)
26 PF01425 Amidase: Amidase; In 100.0 1.2E-83 2.5E-88 686.8 14.0 397 33-456 1-441 (441)
27 PRK06828 amidase; Provisional 100.0 3.2E-81 7E-86 662.0 30.2 396 27-465 25-481 (491)
28 PRK11910 amidase; Provisional 100.0 9.8E-80 2.1E-84 650.4 30.8 391 21-467 166-607 (615)
29 PRK06707 amidase; Provisional 100.0 2.6E-78 5.6E-83 642.6 30.2 382 27-466 83-528 (536)
30 PRK06565 amidase; Validated 100.0 2.2E-75 4.7E-80 613.1 25.9 431 27-467 19-555 (566)
31 KOG1211 Amidases [Translation, 100.0 6.1E-71 1.3E-75 561.6 19.2 414 27-464 30-493 (506)
32 KOG1212 Amidases [Translation, 100.0 1.3E-65 2.8E-70 527.3 19.3 428 19-470 54-555 (560)
33 KOG0553 TPR repeat-containing 99.5 5.4E-14 1.2E-18 133.9 8.8 91 484-574 76-169 (304)
34 PF13414 TPR_11: TPR repeat; P 99.3 8.1E-12 1.8E-16 96.4 7.8 67 488-554 2-69 (69)
35 KOG0547 Translocase of outer m 99.2 2.2E-11 4.7E-16 122.3 8.7 89 486-574 112-203 (606)
36 KOG0548 Molecular co-chaperone 99.2 7.9E-11 1.7E-15 120.0 11.2 90 485-574 354-446 (539)
37 KOG4234 TPR repeat-containing 99.0 1.6E-09 3.5E-14 97.1 10.1 89 486-574 92-188 (271)
38 PF13432 TPR_16: Tetratricopep 99.0 1.3E-09 2.7E-14 82.9 7.6 65 493-557 1-65 (65)
39 PRK15359 type III secretion sy 99.0 3E-09 6.5E-14 94.8 11.2 82 485-566 54-135 (144)
40 KOG0550 Molecular chaperone (D 99.0 1.3E-09 2.7E-14 107.9 7.7 91 484-574 244-341 (486)
41 PRK15359 type III secretion sy 99.0 3.8E-09 8.2E-14 94.2 9.8 83 492-574 27-112 (144)
42 PRK15363 pathogenicity island 98.9 8.2E-09 1.8E-13 90.9 10.7 88 486-573 32-122 (157)
43 KOG4648 Uncharacterized conser 98.9 2.2E-09 4.8E-14 103.5 7.1 70 490-559 98-167 (536)
44 PLN03088 SGT1, suppressor of 98.9 1E-08 2.2E-13 105.6 11.2 73 486-558 33-105 (356)
45 KOG0548 Molecular co-chaperone 98.8 4.9E-09 1.1E-13 107.2 7.3 86 489-574 2-90 (539)
46 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 1.6E-08 3.5E-13 103.1 10.2 71 482-552 68-141 (453)
47 PRK11189 lipoprotein NlpI; Pro 98.8 3.1E-08 6.8E-13 99.6 12.2 72 486-557 95-166 (296)
48 KOG4642 Chaperone-dependent E3 98.8 9.9E-09 2.1E-13 94.7 6.8 82 486-567 7-88 (284)
49 KOG0551 Hsp90 co-chaperone CNS 98.8 3.8E-08 8.3E-13 95.0 10.1 89 486-574 78-173 (390)
50 TIGR02552 LcrH_SycD type III s 98.8 5.2E-08 1.1E-12 85.7 10.3 87 487-573 15-104 (135)
51 PRK10370 formate-dependent nit 98.7 5.5E-08 1.2E-12 91.5 10.1 89 486-574 70-164 (198)
52 TIGR00990 3a0801s09 mitochondr 98.7 4.8E-08 1E-12 108.8 11.0 87 487-574 125-214 (615)
53 PF13371 TPR_9: Tetratricopept 98.7 7.4E-08 1.6E-12 74.9 8.8 63 496-558 2-64 (73)
54 KOG0543 FKBP-type peptidyl-pro 98.7 5.9E-08 1.3E-12 96.9 9.8 88 487-574 206-311 (397)
55 KOG0553 TPR repeat-containing 98.7 7.4E-08 1.6E-12 92.4 8.9 79 485-563 111-189 (304)
56 PRK11189 lipoprotein NlpI; Pro 98.7 1.2E-07 2.7E-12 95.3 10.7 89 486-574 61-152 (296)
57 KOG0624 dsRNA-activated protei 98.6 7.6E-08 1.7E-12 93.2 7.0 92 484-575 33-127 (504)
58 PLN03088 SGT1, suppressor of 98.6 3E-07 6.4E-12 94.8 11.9 85 490-574 3-90 (356)
59 COG3063 PilF Tfp pilus assembl 98.6 3.1E-07 6.8E-12 84.8 10.5 90 484-573 30-122 (250)
60 PRK15363 pathogenicity island 98.6 3.7E-07 8.1E-12 80.5 10.4 69 485-553 65-133 (157)
61 PF14559 TPR_19: Tetratricopep 98.6 1.9E-07 4.1E-12 71.4 7.1 60 499-558 1-60 (68)
62 KOG4626 O-linked N-acetylgluco 98.5 2.1E-07 4.6E-12 96.4 8.6 89 485-573 350-441 (966)
63 KOG4555 TPR repeat-containing 98.5 1.4E-06 3.1E-11 73.0 10.0 72 486-557 40-111 (175)
64 KOG0543 FKBP-type peptidyl-pro 98.5 1.1E-06 2.3E-11 88.0 10.7 70 489-558 257-326 (397)
65 PRK12370 invasion protein regu 98.5 7.2E-07 1.6E-11 97.8 10.4 89 486-574 335-426 (553)
66 cd00189 TPR Tetratricopeptide 98.4 1.9E-06 4.1E-11 69.1 10.3 84 491-574 2-88 (100)
67 COG5010 TadD Flp pilus assembl 98.4 9.2E-07 2E-11 83.4 9.3 88 485-572 96-186 (257)
68 KOG0376 Serine-threonine phosp 98.4 1.3E-07 2.9E-12 96.1 4.0 87 488-574 3-92 (476)
69 TIGR02552 LcrH_SycD type III s 98.4 1.5E-06 3.3E-11 76.3 10.4 73 486-558 48-120 (135)
70 TIGR02795 tol_pal_ybgF tol-pal 98.4 1.5E-06 3.3E-11 74.2 10.0 69 489-557 39-110 (119)
71 PF13424 TPR_12: Tetratricopep 98.4 7E-07 1.5E-11 70.4 7.1 68 486-553 2-76 (78)
72 CHL00033 ycf3 photosystem I as 98.4 2.9E-06 6.2E-11 77.8 11.9 82 484-565 30-117 (168)
73 KOG1125 TPR repeat-containing 98.4 1E-06 2.2E-11 91.2 9.4 112 449-574 404-518 (579)
74 PRK02603 photosystem I assembl 98.4 2.7E-06 5.8E-11 78.3 11.0 75 484-558 30-107 (172)
75 KOG4626 O-linked N-acetylgluco 98.4 1.9E-06 4.1E-11 89.6 10.7 111 449-574 295-408 (966)
76 TIGR00990 3a0801s09 mitochondr 98.4 1.6E-06 3.4E-11 96.7 10.9 89 486-574 396-487 (615)
77 KOG1126 DNA-binding cell divis 98.3 8.7E-07 1.9E-11 93.1 7.5 90 485-574 485-577 (638)
78 KOG0545 Aryl-hydrocarbon recep 98.3 1.9E-06 4.1E-11 80.0 8.7 84 481-564 170-271 (329)
79 KOG4234 TPR repeat-containing 98.3 2.5E-06 5.4E-11 76.9 9.1 72 486-557 131-202 (271)
80 TIGR02521 type_IV_pilW type IV 98.3 5.9E-06 1.3E-10 78.9 12.2 68 489-556 31-98 (234)
81 PF12895 Apc3: Anaphase-promot 98.3 9.4E-07 2E-11 70.8 5.2 73 501-574 1-78 (84)
82 TIGR03302 OM_YfiO outer membra 98.3 1.7E-05 3.6E-10 77.0 13.9 74 484-557 28-104 (235)
83 PRK09782 bacteriophage N4 rece 98.2 4.7E-06 1E-10 96.0 10.7 85 489-573 609-696 (987)
84 COG4235 Cytochrome c biogenesi 98.2 1.3E-05 2.9E-10 77.6 11.4 118 440-574 124-247 (287)
85 PRK10370 formate-dependent nit 98.2 9.5E-06 2.1E-10 76.3 10.1 75 486-560 104-181 (198)
86 KOG0547 Translocase of outer m 98.2 4.3E-06 9.4E-11 84.9 8.0 68 491-558 362-429 (606)
87 KOG1308 Hsp70-interacting prot 98.2 5.9E-07 1.3E-11 87.5 1.7 87 487-573 112-201 (377)
88 PRK15179 Vi polysaccharide bio 98.2 6.6E-06 1.4E-10 91.2 10.0 88 486-573 117-207 (694)
89 PRK09782 bacteriophage N4 rece 98.2 1.1E-05 2.4E-10 93.0 11.6 73 485-557 639-711 (987)
90 PRK15179 Vi polysaccharide bio 98.2 8.4E-06 1.8E-10 90.4 10.2 91 485-575 82-175 (694)
91 KOG1126 DNA-binding cell divis 98.1 2.6E-06 5.6E-11 89.7 5.6 89 486-574 418-543 (638)
92 PRK12370 invasion protein regu 98.1 7.6E-06 1.7E-10 89.8 9.6 89 486-574 292-392 (553)
93 PRK15331 chaperone protein Sic 98.1 1.9E-05 4.2E-10 70.0 10.2 116 452-573 6-124 (165)
94 TIGR02795 tol_pal_ybgF tol-pal 98.1 1.4E-05 3E-10 68.2 8.8 86 489-574 2-96 (119)
95 COG3063 PilF Tfp pilus assembl 98.1 1.1E-05 2.4E-10 74.7 8.4 71 486-557 100-173 (250)
96 PLN02789 farnesyltranstransfer 98.1 2.3E-05 5E-10 79.2 11.4 80 485-564 102-183 (320)
97 PRK15174 Vi polysaccharide exp 98.1 1.2E-05 2.6E-10 89.9 10.0 90 485-574 280-372 (656)
98 PF12895 Apc3: Anaphase-promot 98.1 7.7E-06 1.7E-10 65.5 6.2 61 488-549 24-84 (84)
99 KOG0550 Molecular chaperone (D 98.1 4.1E-06 9E-11 83.4 5.4 87 483-569 43-132 (486)
100 KOG1155 Anaphase-promoting com 98.1 1.7E-05 3.8E-10 80.2 9.4 85 486-570 361-448 (559)
101 PF00515 TPR_1: Tetratricopept 98.0 8.2E-06 1.8E-10 52.8 4.6 34 523-556 1-34 (34)
102 PRK15174 Vi polysaccharide exp 98.0 1.9E-05 4.1E-10 88.3 10.4 89 486-574 243-338 (656)
103 CHL00033 ycf3 photosystem I as 98.0 4.8E-05 1E-09 69.7 11.3 84 487-570 70-167 (168)
104 PRK02603 photosystem I assembl 98.0 4.5E-05 9.8E-10 70.1 10.9 78 488-565 71-162 (172)
105 PRK10803 tol-pal system protei 98.0 3.7E-05 8.1E-10 75.3 10.6 107 450-557 140-251 (263)
106 PF13431 TPR_17: Tetratricopep 98.0 6.6E-06 1.4E-10 53.2 3.3 34 511-544 1-34 (34)
107 PLN02789 farnesyltranstransfer 98.0 5E-05 1.1E-09 76.7 10.8 90 485-574 67-162 (320)
108 TIGR02521 type_IV_pilW type IV 97.9 5.6E-05 1.2E-09 72.1 10.4 84 490-573 100-188 (234)
109 PF06552 TOM20_plant: Plant sp 97.9 4E-05 8.6E-10 68.7 8.3 74 485-558 21-115 (186)
110 TIGR03302 OM_YfiO outer membra 97.9 5.5E-05 1.2E-09 73.3 9.7 72 486-557 67-149 (235)
111 KOG1173 Anaphase-promoting com 97.9 5.6E-05 1.2E-09 78.4 9.9 78 488-565 454-531 (611)
112 KOG1155 Anaphase-promoting com 97.9 0.0001 2.2E-09 74.7 11.3 91 483-573 392-485 (559)
113 PF13512 TPR_18: Tetratricopep 97.9 0.00016 3.4E-09 62.9 10.8 70 488-557 9-81 (142)
114 PF13414 TPR_11: TPR repeat; P 97.9 3E-05 6.5E-10 59.3 5.7 54 521-574 1-58 (69)
115 cd00189 TPR Tetratricopeptide 97.9 5.2E-05 1.1E-09 60.5 7.5 67 489-555 34-100 (100)
116 PF12688 TPR_5: Tetratrico pep 97.9 0.00012 2.7E-09 62.4 9.8 66 490-555 2-70 (120)
117 PF07719 TPR_2: Tetratricopept 97.8 4.5E-05 9.7E-10 49.2 5.0 33 524-556 2-34 (34)
118 PF13429 TPR_15: Tetratricopep 97.8 6.7E-05 1.4E-09 74.9 8.3 88 487-574 144-234 (280)
119 PRK10866 outer membrane biogen 97.8 0.00016 3.4E-09 70.3 10.6 71 487-557 30-103 (243)
120 KOG0624 dsRNA-activated protei 97.8 8.8E-05 1.9E-09 72.4 8.4 74 484-557 67-140 (504)
121 KOG1125 TPR repeat-containing 97.8 2.4E-05 5.3E-10 81.3 4.9 71 485-555 460-530 (579)
122 PRK10049 pgaA outer membrane p 97.8 0.00027 5.8E-09 80.8 13.7 88 487-574 357-447 (765)
123 cd05804 StaR_like StaR_like; a 97.8 0.00012 2.6E-09 75.6 10.0 90 485-574 110-206 (355)
124 PF13525 YfiO: Outer membrane 97.8 0.00031 6.7E-09 66.5 11.9 71 487-557 3-76 (203)
125 PRK11447 cellulose synthase su 97.8 8.7E-05 1.9E-09 88.7 10.0 89 486-574 600-691 (1157)
126 COG5010 TadD Flp pilus assembl 97.7 0.00019 4.2E-09 68.0 10.0 88 485-572 130-220 (257)
127 PRK11447 cellulose synthase su 97.7 0.00014 3.1E-09 86.9 10.5 70 489-558 461-530 (1157)
128 PRK11788 tetratricopeptide rep 97.7 0.00027 5.8E-09 74.0 11.4 66 491-556 182-247 (389)
129 PF00515 TPR_1: Tetratricopept 97.7 7.7E-05 1.7E-09 48.2 4.6 34 489-522 1-34 (34)
130 PRK10049 pgaA outer membrane p 97.7 0.00026 5.7E-09 80.8 12.0 72 486-558 80-151 (765)
131 TIGR02917 PEP_TPR_lipo putativ 97.7 0.00017 3.6E-09 83.6 10.2 87 488-574 21-110 (899)
132 PF13428 TPR_14: Tetratricopep 97.7 0.00011 2.5E-09 50.6 5.3 41 491-531 3-43 (44)
133 PRK10803 tol-pal system protei 97.6 0.00034 7.4E-09 68.6 10.5 86 489-574 142-237 (263)
134 COG4783 Putative Zn-dependent 97.6 0.00036 7.8E-09 71.6 10.6 74 486-559 337-410 (484)
135 TIGR02917 PEP_TPR_lipo putativ 97.6 0.0004 8.7E-09 80.4 12.6 72 486-557 122-193 (899)
136 PF07719 TPR_2: Tetratricopept 97.6 0.00017 3.6E-09 46.4 5.2 34 489-522 1-34 (34)
137 PRK15331 chaperone protein Sic 97.6 0.00032 6.8E-09 62.4 8.4 71 486-557 68-138 (165)
138 COG4785 NlpI Lipoprotein NlpI, 97.6 8.1E-05 1.8E-09 68.2 4.8 72 486-557 62-133 (297)
139 PRK11788 tetratricopeptide rep 97.5 0.00051 1.1E-08 71.9 10.6 85 489-573 214-301 (389)
140 KOG1173 Anaphase-promoting com 97.5 0.00018 3.9E-09 74.7 6.7 90 485-574 410-509 (611)
141 PF13512 TPR_18: Tetratricopep 97.5 0.00067 1.4E-08 59.0 8.9 71 488-558 46-134 (142)
142 KOG4648 Uncharacterized conser 97.5 0.00012 2.5E-09 71.6 4.5 73 485-557 127-199 (536)
143 PRK10153 DNA-binding transcrip 97.5 0.00053 1.2E-08 73.9 9.9 69 488-557 419-487 (517)
144 PF13429 TPR_15: Tetratricopep 97.5 0.00019 4.2E-09 71.6 6.1 89 486-574 177-268 (280)
145 KOG3060 Uncharacterized conser 97.4 0.00081 1.8E-08 63.4 9.2 78 486-563 151-231 (289)
146 KOG2076 RNA polymerase III tra 97.4 0.00081 1.8E-08 73.6 10.6 87 486-572 170-259 (895)
147 COG1729 Uncharacterized protei 97.4 0.0014 3.1E-08 63.0 10.3 73 485-557 174-249 (262)
148 KOG1310 WD40 repeat protein [G 97.3 0.00059 1.3E-08 70.2 7.9 92 483-574 368-465 (758)
149 PF13428 TPR_14: Tetratricopep 97.3 0.00058 1.3E-08 47.0 5.5 40 524-563 2-41 (44)
150 PF09976 TPR_21: Tetratricopep 97.3 0.0015 3.2E-08 58.2 9.6 89 486-574 45-138 (145)
151 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.00036 7.7E-09 71.9 6.1 57 518-574 70-132 (453)
152 COG4783 Putative Zn-dependent 97.3 0.0014 3E-08 67.5 9.5 89 486-574 303-394 (484)
153 PF13181 TPR_8: Tetratricopept 97.3 0.00047 1E-08 44.3 4.1 32 524-555 2-33 (34)
154 PRK14574 hmsH outer membrane p 97.2 0.0014 3E-08 74.4 10.3 72 487-558 100-171 (822)
155 KOG2002 TPR-containing nuclear 97.2 0.0016 3.4E-08 71.9 9.9 81 485-565 303-384 (1018)
156 KOG2076 RNA polymerase III tra 97.2 0.0026 5.5E-08 69.8 11.2 87 487-573 137-226 (895)
157 KOG1128 Uncharacterized conser 97.1 0.0017 3.8E-08 69.6 9.1 119 439-557 456-587 (777)
158 PRK11906 transcriptional regul 97.1 0.0016 3.4E-08 67.3 8.5 73 485-557 334-406 (458)
159 KOG2003 TPR repeat-containing 97.1 0.00057 1.2E-08 69.0 4.7 86 488-573 489-577 (840)
160 KOG0376 Serine-threonine phosp 97.1 0.00038 8.3E-09 71.4 3.2 79 485-563 34-112 (476)
161 PF09295 ChAPs: ChAPs (Chs5p-A 97.1 0.0031 6.6E-08 65.3 9.9 80 495-574 206-288 (395)
162 KOG1156 N-terminal acetyltrans 97.0 0.0025 5.5E-08 67.5 9.1 89 486-574 72-163 (700)
163 KOG2002 TPR-containing nuclear 97.0 0.0019 4E-08 71.4 7.9 73 486-558 161-234 (1018)
164 KOG0545 Aryl-hydrocarbon recep 97.0 0.0044 9.6E-08 58.2 9.2 71 487-557 228-298 (329)
165 KOG1128 Uncharacterized conser 97.0 0.0015 3.3E-08 70.0 7.0 71 492-562 488-558 (777)
166 KOG4162 Predicted calmodulin-b 97.0 0.0032 6.9E-08 68.0 9.1 88 486-573 681-773 (799)
167 COG2956 Predicted N-acetylgluc 97.0 0.0046 1E-07 60.4 9.4 89 483-571 174-266 (389)
168 COG4105 ComL DNA uptake lipopr 97.0 0.0088 1.9E-07 57.1 11.1 70 488-557 33-105 (254)
169 cd05804 StaR_like StaR_like; a 96.9 0.0056 1.2E-07 63.1 10.8 86 489-574 43-168 (355)
170 PRK10153 DNA-binding transcrip 96.9 0.0057 1.2E-07 66.1 10.7 88 487-574 337-473 (517)
171 KOG3060 Uncharacterized conser 96.9 0.0094 2E-07 56.4 10.6 73 486-558 117-189 (289)
172 COG4785 NlpI Lipoprotein NlpI, 96.9 0.0023 5E-08 59.0 6.3 79 485-563 95-173 (297)
173 KOG4555 TPR repeat-containing 96.9 0.0059 1.3E-07 51.7 8.2 72 486-557 74-149 (175)
174 PRK10941 hypothetical protein; 96.9 0.0062 1.3E-07 59.7 9.8 70 489-558 181-250 (269)
175 PF09295 ChAPs: ChAPs (Chs5p-A 96.9 0.0028 6.1E-08 65.5 7.7 67 486-552 231-297 (395)
176 PF12688 TPR_5: Tetratrico pep 96.9 0.009 1.9E-07 51.0 9.5 67 486-552 35-104 (120)
177 COG2956 Predicted N-acetylgluc 96.9 0.0069 1.5E-07 59.2 9.7 74 484-557 209-283 (389)
178 PF09976 TPR_21: Tetratricopep 96.9 0.014 2.9E-07 51.9 11.2 89 486-574 8-105 (145)
179 KOG4162 Predicted calmodulin-b 96.8 0.0029 6.2E-08 68.3 7.7 74 484-557 713-788 (799)
180 KOG1127 TPR repeat-containing 96.8 0.0017 3.7E-08 71.7 5.8 88 487-574 560-650 (1238)
181 PRK10866 outer membrane biogen 96.8 0.015 3.3E-07 56.5 11.9 72 486-557 66-158 (243)
182 PF13181 TPR_8: Tetratricopept 96.8 0.0029 6.2E-08 40.6 4.6 34 489-522 1-34 (34)
183 PF12569 NARP1: NMDA receptor- 96.7 0.011 2.4E-07 63.6 11.3 80 488-567 3-82 (517)
184 PF13432 TPR_16: Tetratricopep 96.7 0.004 8.7E-08 46.7 5.8 38 486-523 28-65 (65)
185 KOG1156 N-terminal acetyltrans 96.7 0.004 8.7E-08 66.0 7.5 89 484-572 36-127 (700)
186 KOG1127 TPR repeat-containing 96.7 0.0061 1.3E-07 67.5 9.1 75 492-566 5-83 (1238)
187 PF14853 Fis1_TPR_C: Fis1 C-te 96.7 0.01 2.2E-07 42.4 7.2 37 524-560 2-38 (53)
188 PRK14574 hmsH outer membrane p 96.7 0.031 6.7E-07 63.7 14.6 91 483-573 410-503 (822)
189 KOG4642 Chaperone-dependent E3 96.7 0.0037 8E-08 58.5 5.9 67 486-552 41-107 (284)
190 PF12569 NARP1: NMDA receptor- 96.6 0.023 4.9E-07 61.2 12.7 69 489-557 194-262 (517)
191 PF06552 TOM20_plant: Plant sp 96.6 0.0098 2.1E-07 53.6 8.2 64 505-568 7-83 (186)
192 KOG2796 Uncharacterized conser 96.6 0.013 2.8E-07 55.8 9.2 71 487-557 250-320 (366)
193 KOG1840 Kinesin light chain [C 96.6 0.0093 2E-07 63.6 9.1 71 483-553 235-313 (508)
194 KOG0551 Hsp90 co-chaperone CNS 96.6 0.0042 9.1E-08 60.9 5.9 70 487-556 117-186 (390)
195 KOG1130 Predicted G-alpha GTPa 96.6 0.0021 4.6E-08 64.4 3.9 119 447-574 161-295 (639)
196 COG4976 Predicted methyltransf 96.5 0.0033 7.1E-08 58.4 4.8 61 498-558 4-64 (287)
197 KOG1840 Kinesin light chain [C 96.5 0.012 2.5E-07 62.9 9.6 91 483-573 193-302 (508)
198 PRK10747 putative protoheme IX 96.5 0.025 5.4E-07 59.5 11.9 63 495-557 159-221 (398)
199 PRK14720 transcript cleavage f 96.5 0.0087 1.9E-07 67.7 8.7 63 490-553 117-179 (906)
200 TIGR00540 hemY_coli hemY prote 96.5 0.023 4.9E-07 60.0 11.6 65 493-557 157-221 (409)
201 KOG4340 Uncharacterized conser 96.5 0.0086 1.9E-07 57.8 7.4 74 499-574 20-93 (459)
202 PF13525 YfiO: Outer membrane 96.5 0.022 4.8E-07 53.8 10.3 72 486-557 39-124 (203)
203 COG1729 Uncharacterized protei 96.4 0.021 4.6E-07 55.0 9.5 79 491-569 143-227 (262)
204 KOG1174 Anaphase-promoting com 96.4 0.0092 2E-07 60.1 7.1 64 491-554 302-365 (564)
205 PF13174 TPR_6: Tetratricopept 96.3 0.0066 1.4E-07 38.4 4.0 32 525-556 2-33 (33)
206 KOG3824 Huntingtin interacting 96.3 0.017 3.7E-07 56.0 8.1 77 486-562 113-189 (472)
207 smart00028 TPR Tetratricopepti 96.3 0.0058 1.3E-07 37.7 3.6 32 524-555 2-33 (34)
208 PF13371 TPR_9: Tetratricopept 96.3 0.01 2.3E-07 45.5 5.5 46 486-531 26-71 (73)
209 PF03704 BTAD: Bacterial trans 96.2 0.037 8E-07 49.1 9.8 63 489-551 62-124 (146)
210 COG4235 Cytochrome c biogenesi 96.2 0.025 5.4E-07 55.3 8.7 60 505-564 138-197 (287)
211 PF13176 TPR_7: Tetratricopept 96.2 0.0068 1.5E-07 39.6 3.4 28 525-552 1-28 (36)
212 PF13424 TPR_12: Tetratricopep 96.1 0.0049 1.1E-07 48.2 3.1 55 520-574 2-66 (78)
213 PRK10747 putative protoheme IX 96.1 0.02 4.3E-07 60.2 8.4 71 501-571 306-378 (398)
214 PF13176 TPR_7: Tetratricopept 96.1 0.014 3E-07 38.1 4.5 29 491-519 1-29 (36)
215 PRK14720 transcript cleavage f 96.1 0.022 4.7E-07 64.6 8.8 51 507-557 100-150 (906)
216 KOG1129 TPR repeat-containing 96.0 0.0093 2E-07 58.3 5.0 125 445-573 283-414 (478)
217 TIGR00540 hemY_coli hemY prote 96.0 0.042 9E-07 58.1 10.3 89 486-574 115-207 (409)
218 KOG1308 Hsp70-interacting prot 96.0 0.0029 6.2E-08 62.3 1.3 71 485-555 144-214 (377)
219 PRK11906 transcriptional regul 96.0 0.055 1.2E-06 56.2 10.6 80 485-564 291-379 (458)
220 KOG4340 Uncharacterized conser 95.9 0.011 2.4E-07 57.0 4.8 66 487-552 142-207 (459)
221 KOG1174 Anaphase-promoting com 95.9 0.028 6E-07 56.8 7.7 80 484-563 329-408 (564)
222 KOG2003 TPR repeat-containing 95.7 0.044 9.6E-07 55.8 8.5 73 486-558 521-593 (840)
223 PF04733 Coatomer_E: Coatomer 95.7 0.03 6.5E-07 55.9 7.1 71 488-558 200-271 (290)
224 PF14938 SNAP: Soluble NSF att 95.6 0.026 5.7E-07 56.3 6.7 69 489-557 114-189 (282)
225 PF14938 SNAP: Soluble NSF att 95.6 0.029 6.2E-07 56.0 6.9 31 489-519 155-185 (282)
226 PF10579 Rapsyn_N: Rapsyn N-te 95.5 0.13 2.9E-06 39.6 8.4 66 487-552 4-72 (80)
227 PF13174 TPR_6: Tetratricopept 95.5 0.028 6.1E-07 35.4 4.1 33 490-522 1-33 (33)
228 PF14559 TPR_19: Tetratricopep 95.4 0.024 5.2E-07 42.7 4.3 46 486-531 22-67 (68)
229 smart00028 TPR Tetratricopepti 95.4 0.024 5.3E-07 34.7 3.6 33 490-522 2-34 (34)
230 KOG1129 TPR repeat-containing 95.3 0.028 6E-07 55.1 5.1 72 486-557 392-463 (478)
231 PF14561 TPR_20: Tetratricopep 95.1 0.11 2.3E-06 42.0 7.3 50 508-557 7-56 (90)
232 KOG4814 Uncharacterized conser 95.1 0.087 1.9E-06 56.1 8.4 69 490-558 355-429 (872)
233 COG4700 Uncharacterized protei 95.0 0.17 3.7E-06 45.9 8.8 81 491-571 91-177 (251)
234 PF04733 Coatomer_E: Coatomer 94.8 0.12 2.7E-06 51.5 8.5 61 503-563 181-241 (290)
235 COG2912 Uncharacterized conser 94.5 0.13 2.9E-06 49.7 7.5 69 489-557 181-249 (269)
236 PF03704 BTAD: Bacterial trans 94.3 0.59 1.3E-05 41.3 11.0 86 489-574 6-116 (146)
237 KOG3785 Uncharacterized conser 94.3 0.4 8.7E-06 47.7 10.3 68 494-561 156-223 (557)
238 PF13431 TPR_17: Tetratricopep 94.3 0.043 9.3E-07 35.2 2.5 30 546-575 2-34 (34)
239 PF14853 Fis1_TPR_C: Fis1 C-te 94.2 0.3 6.6E-06 34.9 7.0 42 491-532 3-44 (53)
240 KOG3081 Vesicle coat complex C 94.1 0.15 3.3E-06 48.9 6.8 104 451-557 168-276 (299)
241 KOG0495 HAT repeat protein [RN 93.9 0.2 4.3E-06 53.8 7.9 69 489-557 651-719 (913)
242 PF13374 TPR_10: Tetratricopep 93.9 0.14 2.9E-06 34.1 4.7 30 523-552 2-31 (42)
243 PF12968 DUF3856: Domain of Un 93.9 0.8 1.7E-05 38.4 9.7 61 492-552 12-84 (144)
244 PF12862 Apc5: Anaphase-promot 93.7 0.43 9.4E-06 38.7 8.1 69 498-566 7-86 (94)
245 PF04781 DUF627: Protein of un 93.6 0.52 1.1E-05 39.2 8.3 80 495-574 2-98 (111)
246 KOG1130 Predicted G-alpha GTPa 93.5 0.16 3.4E-06 51.5 6.1 62 491-552 57-124 (639)
247 KOG3785 Uncharacterized conser 93.5 0.14 2.9E-06 51.0 5.4 61 487-549 57-117 (557)
248 PF10602 RPN7: 26S proteasome 93.3 1.3 2.8E-05 40.7 11.5 68 485-552 32-102 (177)
249 PF10516 SHNi-TPR: SHNi-TPR; 93.2 0.15 3.2E-06 33.6 3.6 30 524-553 2-31 (38)
250 PF15015 NYD-SP12_N: Spermatog 93.0 0.61 1.3E-05 47.5 9.3 85 489-573 176-281 (569)
251 KOG2376 Signal recognition par 93.0 0.21 4.7E-06 52.9 6.4 58 494-554 84-141 (652)
252 PF13374 TPR_10: Tetratricopep 93.0 0.25 5.4E-06 32.8 4.8 31 489-519 2-32 (42)
253 KOG2376 Signal recognition par 92.9 0.37 8E-06 51.2 7.9 86 486-575 43-131 (652)
254 COG4105 ComL DNA uptake lipopr 92.8 1.3 2.8E-05 42.6 10.8 69 489-557 71-150 (254)
255 PF09613 HrpB1_HrpK: Bacterial 92.8 2 4.3E-05 38.4 11.3 71 488-558 9-79 (160)
256 KOG3081 Vesicle coat complex C 92.8 0.78 1.7E-05 44.2 9.2 73 491-563 171-247 (299)
257 KOG3364 Membrane protein invol 92.6 0.79 1.7E-05 39.4 8.1 70 489-558 32-106 (149)
258 KOG2053 Mitochondrial inherita 92.2 0.76 1.7E-05 51.2 9.5 84 487-570 41-126 (932)
259 COG3071 HemY Uncharacterized e 91.3 0.74 1.6E-05 46.7 7.7 65 485-550 324-388 (400)
260 COG3071 HemY Uncharacterized e 91.2 0.86 1.9E-05 46.2 8.0 71 499-569 304-376 (400)
261 KOG0495 HAT repeat protein [RN 91.1 0.76 1.6E-05 49.5 7.8 72 486-557 682-753 (913)
262 PF12968 DUF3856: Domain of Un 91.0 2.5 5.3E-05 35.6 9.1 65 488-552 54-129 (144)
263 PF10300 DUF3808: Protein of u 90.9 0.92 2E-05 48.7 8.6 70 485-554 263-336 (468)
264 cd02682 MIT_AAA_Arch MIT: doma 90.9 1.5 3.2E-05 33.8 7.3 38 487-524 4-48 (75)
265 KOG2796 Uncharacterized conser 90.9 1 2.2E-05 43.2 7.7 89 486-574 209-306 (366)
266 KOG4507 Uncharacterized conser 90.5 0.58 1.3E-05 49.6 6.2 66 492-557 645-710 (886)
267 COG3118 Thioredoxin domain-con 90.1 1.7 3.7E-05 42.6 8.7 71 487-557 166-270 (304)
268 COG0457 NrfG FOG: TPR repeat [ 90.1 2.3 5.1E-05 39.0 9.9 58 498-555 139-199 (291)
269 KOG1310 WD40 repeat protein [G 89.8 0.75 1.6E-05 48.2 6.3 72 486-557 405-479 (758)
270 COG0457 NrfG FOG: TPR repeat [ 88.8 4.1 8.8E-05 37.3 10.5 69 487-555 165-234 (291)
271 COG4700 Uncharacterized protei 88.8 2.9 6.4E-05 38.2 8.5 84 489-573 160-248 (251)
272 COG2976 Uncharacterized protei 88.6 1.9 4E-05 39.7 7.3 67 490-557 127-193 (207)
273 KOG1586 Protein required for f 88.2 3.5 7.5E-05 39.1 8.9 66 486-552 71-143 (288)
274 KOG2610 Uncharacterized conser 88.0 2.2 4.7E-05 42.5 7.8 72 486-557 134-209 (491)
275 PF07720 TPR_3: Tetratricopept 87.8 2 4.3E-05 27.9 5.1 30 491-520 3-34 (36)
276 PF10516 SHNi-TPR: SHNi-TPR; 87.6 0.98 2.1E-05 29.8 3.6 30 490-519 2-31 (38)
277 KOG4151 Myosin assembly protei 87.6 0.99 2.1E-05 49.7 5.8 87 487-573 51-146 (748)
278 PF14561 TPR_20: Tetratricopep 87.4 3.4 7.4E-05 33.2 7.5 62 485-546 18-81 (90)
279 KOG1941 Acetylcholine receptor 87.1 0.95 2.1E-05 45.4 4.8 82 493-574 126-214 (518)
280 PF07720 TPR_3: Tetratricopept 86.9 2.1 4.6E-05 27.8 4.9 33 524-556 2-36 (36)
281 COG3118 Thioredoxin domain-con 86.8 2.7 5.8E-05 41.3 7.7 60 489-548 134-193 (304)
282 KOG0546 HSP90 co-chaperone CPR 86.8 0.44 9.6E-06 47.6 2.4 67 491-557 277-343 (372)
283 PF04184 ST7: ST7 protein; In 86.6 2.6 5.6E-05 44.3 7.9 60 491-550 261-322 (539)
284 PF14863 Alkyl_sulf_dimr: Alky 86.5 2.3 5.1E-05 37.3 6.5 51 489-539 70-120 (141)
285 TIGR02561 HrpB1_HrpK type III 86.3 9.9 0.00022 33.5 10.1 68 490-557 11-78 (153)
286 PF07721 TPR_4: Tetratricopept 85.3 1.1 2.5E-05 26.5 2.8 23 525-547 3-25 (26)
287 PLN03218 maturation of RBCL 1; 84.3 5.6 0.00012 47.1 10.3 63 490-552 580-643 (1060)
288 COG3629 DnrI DNA-binding trans 84.1 6.4 0.00014 38.8 9.0 65 488-552 152-216 (280)
289 PF07079 DUF1347: Protein of u 83.8 6.2 0.00014 41.0 8.9 62 487-549 460-521 (549)
290 KOG2471 TPR repeat-containing 83.8 1.5 3.2E-05 45.7 4.5 70 488-557 282-369 (696)
291 PRK04841 transcriptional regul 83.0 4.6 0.0001 47.4 9.1 63 490-552 453-520 (903)
292 PF09986 DUF2225: Uncharacteri 82.8 7.5 0.00016 36.9 8.7 67 487-553 116-195 (214)
293 PF10373 EST1_DNA_bind: Est1 D 82.5 4.8 0.00011 39.6 7.8 60 508-567 1-60 (278)
294 PF10952 DUF2753: Protein of u 82.4 12 0.00026 31.7 8.5 81 491-571 3-110 (140)
295 PF05843 Suf: Suppressor of fo 82.2 9 0.00019 38.1 9.5 70 488-557 34-104 (280)
296 PF09613 HrpB1_HrpK: Bacterial 81.8 18 0.00038 32.5 10.0 69 486-555 41-109 (160)
297 cd02683 MIT_1 MIT: domain cont 81.6 11 0.00023 29.3 7.7 33 486-518 3-35 (77)
298 PF04212 MIT: MIT (microtubule 81.4 3.9 8.5E-05 30.9 5.1 32 487-518 3-34 (69)
299 COG4455 ImpE Protein of avirul 81.3 13 0.00029 34.9 9.3 63 495-557 7-69 (273)
300 PLN03218 maturation of RBCL 1; 80.6 9.9 0.00022 45.1 10.5 58 493-550 688-746 (1060)
301 PLN03081 pentatricopeptide (PP 80.5 4.1 8.9E-05 46.3 7.2 56 493-551 364-419 (697)
302 PLN03081 pentatricopeptide (PP 80.3 4.3 9.3E-05 46.1 7.3 64 489-552 494-557 (697)
303 PF10300 DUF3808: Protein of u 80.3 6.5 0.00014 42.2 8.2 74 501-574 245-325 (468)
304 COG3914 Spy Predicted O-linked 80.1 12 0.00026 40.2 9.8 80 483-563 62-142 (620)
305 PRK04841 transcriptional regul 80.1 5.5 0.00012 46.7 8.4 65 491-555 693-763 (903)
306 KOG1585 Protein required for f 79.7 10 0.00023 36.3 8.2 67 486-552 28-100 (308)
307 KOG1586 Protein required for f 79.7 25 0.00055 33.5 10.6 72 483-555 28-105 (288)
308 PRK10941 hypothetical protein; 79.0 4.1 8.8E-05 40.1 5.7 51 524-574 182-235 (269)
309 KOG1941 Acetylcholine receptor 78.8 12 0.00027 37.8 8.8 67 487-553 160-236 (518)
310 PF08424 NRDE-2: NRDE-2, neces 78.7 25 0.00055 35.6 11.6 53 505-557 47-99 (321)
311 cd02681 MIT_calpain7_1 MIT: do 78.4 5.1 0.00011 31.0 4.9 32 487-518 4-35 (76)
312 KOG2053 Mitochondrial inherita 78.1 8.1 0.00018 43.4 8.1 76 498-573 18-96 (932)
313 KOG2396 HAT (Half-A-TPR) repea 78.1 19 0.00041 38.1 10.2 71 488-558 104-175 (568)
314 PF07721 TPR_4: Tetratricopept 77.8 3.1 6.8E-05 24.6 2.8 24 490-513 2-25 (26)
315 COG2976 Uncharacterized protei 77.5 8.2 0.00018 35.6 6.7 61 490-550 90-153 (207)
316 cd02680 MIT_calpain7_2 MIT: do 77.2 4.9 0.00011 31.0 4.4 32 487-518 4-35 (75)
317 TIGR03504 FimV_Cterm FimV C-te 76.7 9.1 0.0002 26.1 5.2 25 527-551 3-27 (44)
318 PLN03077 Protein ECB2; Provisi 76.6 10 0.00022 44.3 9.0 82 490-573 626-710 (857)
319 COG3947 Response regulator con 76.6 11 0.00023 37.1 7.5 58 492-549 282-339 (361)
320 PF15015 NYD-SP12_N: Spermatog 75.0 14 0.0003 38.2 8.0 58 493-550 232-289 (569)
321 PF04910 Tcf25: Transcriptiona 74.9 16 0.00034 37.8 8.9 73 485-557 36-138 (360)
322 cd02678 MIT_VPS4 MIT: domain c 74.3 11 0.00025 28.9 5.9 32 487-518 4-35 (75)
323 PF04781 DUF627: Protein of un 74.3 5.6 0.00012 33.2 4.3 48 505-552 60-107 (111)
324 smart00745 MIT Microtubule Int 73.7 13 0.00027 28.7 6.1 32 487-518 6-37 (77)
325 PF11817 Foie-gras_1: Foie gra 73.6 20 0.00043 34.9 8.9 64 487-550 176-245 (247)
326 PF13281 DUF4071: Domain of un 73.3 18 0.00039 37.3 8.7 69 489-557 179-260 (374)
327 cd02684 MIT_2 MIT: domain cont 73.1 13 0.00029 28.6 6.0 33 486-518 3-35 (75)
328 PF02259 FAT: FAT domain; Int 71.9 16 0.00034 37.3 8.2 74 484-557 247-343 (352)
329 PF07219 HemY_N: HemY protein 71.7 20 0.00043 29.8 7.3 53 486-538 56-108 (108)
330 cd02656 MIT MIT: domain contai 71.7 14 0.00031 28.3 6.0 32 487-518 4-35 (75)
331 KOG0529 Protein geranylgeranyl 71.5 15 0.00033 37.8 7.5 54 504-557 90-145 (421)
332 KOG1585 Protein required for f 71.1 39 0.00085 32.5 9.6 67 486-552 107-179 (308)
333 COG5191 Uncharacterized conser 71.1 9.6 0.00021 37.7 5.7 73 486-558 104-177 (435)
334 cd02682 MIT_AAA_Arch MIT: doma 69.4 24 0.00051 27.3 6.5 34 525-558 8-48 (75)
335 COG3914 Spy Predicted O-linked 68.1 32 0.0007 37.1 9.3 73 486-558 98-177 (620)
336 PLN03077 Protein ECB2; Provisi 68.0 19 0.00041 42.0 8.7 63 489-551 657-719 (857)
337 PF04184 ST7: ST7 protein; In 67.6 29 0.00062 36.9 8.7 33 523-555 259-291 (539)
338 PF11207 DUF2989: Protein of u 66.8 27 0.00059 32.5 7.6 56 487-543 139-198 (203)
339 PF08631 SPO22: Meiosis protei 66.7 51 0.0011 32.6 10.3 62 483-544 29-105 (278)
340 smart00386 HAT HAT (Half-A-TPR 66.3 15 0.00032 22.2 4.3 29 503-531 1-29 (33)
341 KOG1915 Cell cycle control pro 66.2 73 0.0016 33.7 11.1 64 492-555 76-139 (677)
342 KOG2610 Uncharacterized conser 65.8 25 0.00054 35.3 7.5 61 489-549 175-235 (491)
343 cd02677 MIT_SNX15 MIT: domain 64.9 13 0.00028 28.7 4.4 32 487-518 4-35 (75)
344 PF04053 Coatomer_WDAD: Coatom 64.4 24 0.00052 37.6 7.7 55 488-550 346-400 (443)
345 PF05843 Suf: Suppressor of fo 62.9 26 0.00056 34.8 7.3 67 491-557 3-70 (280)
346 PF06957 COPI_C: Coatomer (COP 62.9 25 0.00055 36.8 7.4 26 532-557 309-334 (422)
347 KOG1915 Cell cycle control pro 62.5 53 0.0011 34.7 9.3 88 483-571 398-488 (677)
348 KOG3783 Uncharacterized conser 62.4 93 0.002 33.4 11.3 89 485-573 445-544 (546)
349 TIGR02561 HrpB1_HrpK type III 62.0 19 0.00042 31.7 5.3 65 489-554 44-108 (153)
350 PF02259 FAT: FAT domain; Int 61.8 73 0.0016 32.3 10.8 66 486-551 143-212 (352)
351 KOG4563 Cell cycle-regulated h 61.6 25 0.00055 35.6 6.7 62 485-546 37-106 (400)
352 KOG3364 Membrane protein invol 60.8 24 0.00051 30.7 5.5 43 489-531 71-113 (149)
353 KOG2471 TPR repeat-containing 59.9 16 0.00035 38.4 5.2 51 485-535 331-381 (696)
354 PF01239 PPTA: Protein prenylt 59.8 31 0.00067 21.2 4.7 29 508-536 2-30 (31)
355 KOG0530 Protein farnesyltransf 58.4 48 0.001 32.3 7.7 53 505-557 94-147 (318)
356 cd02679 MIT_spastin MIT: domai 58.2 19 0.00042 28.0 4.3 32 487-518 6-37 (79)
357 cd02680 MIT_calpain7_2 MIT: do 57.5 22 0.00047 27.5 4.4 33 505-552 3-35 (75)
358 PF08631 SPO22: Meiosis protei 57.1 35 0.00077 33.7 7.2 54 499-552 3-65 (278)
359 KOG2047 mRNA splicing factor [ 55.8 85 0.0018 34.5 9.8 82 485-568 345-432 (835)
360 cd02679 MIT_spastin MIT: domai 55.4 25 0.00055 27.4 4.5 18 503-520 3-20 (79)
361 KOG1070 rRNA processing protei 55.0 61 0.0013 38.8 9.2 64 492-555 1533-1596(1710)
362 PF13281 DUF4071: Domain of un 55.0 85 0.0018 32.5 9.5 81 489-569 141-229 (374)
363 COG4649 Uncharacterized protei 54.1 66 0.0014 29.4 7.4 55 481-536 159-213 (221)
364 KOG3824 Huntingtin interacting 52.1 16 0.00035 36.1 3.5 48 486-533 147-194 (472)
365 KOG2581 26S proteasome regulat 52.0 45 0.00097 34.4 6.7 59 466-524 224-282 (493)
366 PRK15180 Vi polysaccharide bio 51.9 90 0.002 33.0 9.0 109 448-572 298-416 (831)
367 KOG0686 COP9 signalosome, subu 51.3 1.9E+02 0.0041 30.1 11.0 65 488-552 149-216 (466)
368 PRK13184 pknD serine/threonine 50.4 25 0.00055 40.9 5.4 54 503-557 533-586 (932)
369 KOG4507 Uncharacterized conser 48.8 33 0.00072 37.0 5.4 75 500-574 618-696 (886)
370 PHA01486 nonstructural protein 47.5 6.4 0.00014 23.3 0.1 8 1-8 1-8 (32)
371 PF12854 PPR_1: PPR repeat 47.1 51 0.0011 20.8 4.3 27 522-548 6-32 (34)
372 PF09205 DUF1955: Domain of un 47.0 1.3E+02 0.0028 26.2 7.7 62 491-552 87-149 (161)
373 KOG1464 COP9 signalosome, subu 46.7 57 0.0012 31.8 6.3 53 500-552 38-94 (440)
374 COG3898 Uncharacterized membra 46.1 1.1E+02 0.0024 31.6 8.4 51 499-549 164-214 (531)
375 KOG0530 Protein farnesyltransf 46.0 71 0.0015 31.1 6.7 70 485-554 108-178 (318)
376 PF11846 DUF3366: Domain of un 45.1 66 0.0014 29.7 6.6 51 506-557 128-178 (193)
377 KOG0546 HSP90 co-chaperone CPR 44.0 38 0.00082 34.3 4.8 57 484-540 304-360 (372)
378 cd02683 MIT_1 MIT: domain cont 43.8 98 0.0021 23.9 6.2 14 506-519 4-17 (77)
379 PRK15490 Vi polysaccharide bio 42.7 1.6E+02 0.0034 32.4 9.6 60 486-547 39-98 (578)
380 PF04212 MIT: MIT (microtubule 41.9 61 0.0013 24.2 4.7 23 529-551 11-33 (69)
381 PF12862 Apc5: Anaphase-promot 41.4 53 0.0011 26.4 4.6 34 487-520 39-72 (94)
382 cd02677 MIT_SNX15 MIT: domain 41.3 40 0.00086 26.0 3.6 32 505-551 3-34 (75)
383 PF14863 Alkyl_sulf_dimr: Alky 41.2 1.2E+02 0.0026 26.6 7.1 41 523-563 70-110 (141)
384 PF10255 Paf67: RNA polymerase 40.7 43 0.00093 35.0 4.9 55 495-550 128-191 (404)
385 KOG4056 Translocase of outer m 40.6 58 0.0012 28.2 4.7 40 486-525 74-117 (143)
386 COG4976 Predicted methyltransf 40.4 30 0.00064 33.0 3.2 38 486-523 26-63 (287)
387 PF02064 MAS20: MAS20 protein 40.4 48 0.001 28.3 4.3 32 493-524 67-98 (121)
388 TIGR03504 FimV_Cterm FimV C-te 40.3 56 0.0012 22.3 3.8 25 493-517 3-27 (44)
389 KOG4151 Myosin assembly protei 40.1 43 0.00093 37.4 4.9 72 486-557 88-161 (748)
390 KOG2581 26S proteasome regulat 39.5 1.1E+02 0.0023 31.8 7.2 69 488-556 208-280 (493)
391 COG2912 Uncharacterized conser 39.3 42 0.00092 32.8 4.3 48 485-532 211-258 (269)
392 KOG0739 AAA+-type ATPase [Post 39.2 1.4E+02 0.003 29.9 7.6 33 486-518 7-39 (439)
393 PRK15180 Vi polysaccharide bio 38.9 3.4E+02 0.0073 29.0 10.7 57 493-549 293-349 (831)
394 PF01535 PPR: PPR repeat; Int 38.4 53 0.0012 19.3 3.3 26 526-551 3-28 (31)
395 PF09670 Cas_Cas02710: CRISPR- 38.1 1.9E+02 0.0041 30.1 9.3 63 490-552 132-198 (379)
396 TIGR00985 3a0801s04tom mitocho 37.3 1.8E+02 0.0039 25.8 7.4 41 485-525 82-127 (148)
397 PF10579 Rapsyn_N: Rapsyn N-te 36.8 1.6E+02 0.0034 23.0 6.1 49 526-574 9-63 (80)
398 cd02681 MIT_calpain7_1 MIT: do 36.0 79 0.0017 24.5 4.5 30 507-551 5-34 (76)
399 PF13041 PPR_2: PPR repeat fam 35.7 92 0.002 21.3 4.6 34 522-555 2-37 (50)
400 PRK15326 type III secretion sy 35.6 1.3E+02 0.0028 23.5 5.5 20 507-526 25-44 (80)
401 COG2909 MalT ATP-dependent tra 35.5 3E+02 0.0064 31.7 10.4 67 488-554 457-528 (894)
402 COG3947 Response regulator con 35.0 79 0.0017 31.3 5.3 46 524-569 280-328 (361)
403 COG2015 Alkyl sulfatase and re 35.0 89 0.0019 33.1 5.9 55 489-543 452-506 (655)
404 KOG2300 Uncharacterized conser 34.9 2.6E+02 0.0056 29.9 9.2 71 487-557 44-123 (629)
405 KOG2041 WD40 repeat protein [G 34.9 1.1E+02 0.0023 34.1 6.7 66 484-549 791-878 (1189)
406 PF10938 YfdX: YfdX protein; 34.7 1.1E+02 0.0023 27.4 5.8 65 487-551 73-145 (155)
407 KOG0529 Protein geranylgeranyl 34.6 2.7E+02 0.006 29.0 9.3 75 485-559 105-185 (421)
408 PF08424 NRDE-2: NRDE-2, neces 34.3 1.9E+02 0.004 29.3 8.4 50 509-558 5-66 (321)
409 PF10602 RPN7: 26S proteasome 33.9 1.6E+02 0.0035 26.8 7.1 32 523-554 36-67 (177)
410 KOG1914 mRNA cleavage and poly 33.7 1.5E+02 0.0034 31.9 7.5 69 483-552 14-82 (656)
411 KOG1839 Uncharacterized protei 33.0 94 0.002 37.0 6.4 90 485-574 969-1077(1236)
412 KOG2758 Translation initiation 32.5 2E+02 0.0043 29.0 7.5 68 485-552 125-196 (432)
413 COG2909 MalT ATP-dependent tra 32.4 2.9E+02 0.0063 31.8 9.7 85 490-574 416-517 (894)
414 PF10345 Cohesin_load: Cohesin 32.3 3.3E+02 0.0072 30.3 10.7 69 486-555 56-131 (608)
415 TIGR02710 CRISPR-associated pr 32.0 2E+02 0.0043 29.9 8.0 64 485-548 124-196 (380)
416 KOG1839 Uncharacterized protei 30.9 1.8E+02 0.004 34.7 8.2 92 482-573 1008-1118(1236)
417 TIGR00756 PPR pentatricopeptid 30.8 1.2E+02 0.0026 18.1 4.2 26 526-551 3-28 (35)
418 PF00244 14-3-3: 14-3-3 protei 30.3 95 0.002 29.9 5.1 47 506-552 143-198 (236)
419 PF11207 DUF2989: Protein of u 29.4 2.5E+02 0.0053 26.4 7.3 68 506-574 123-198 (203)
420 PF04910 Tcf25: Transcriptiona 29.2 1.6E+02 0.0035 30.4 6.9 37 514-550 31-67 (360)
421 PF13812 PPR_3: Pentatricopept 29.1 1.3E+02 0.0029 18.0 4.4 27 525-551 3-29 (34)
422 COG3629 DnrI DNA-binding trans 28.8 3.2E+02 0.007 27.0 8.5 52 505-558 137-188 (280)
423 KOG2997 F-box protein FBX9 [Ge 28.4 1.1E+02 0.0023 30.8 5.0 43 485-527 15-57 (366)
424 PF08969 USP8_dimer: USP8 dime 28.1 1.3E+02 0.0028 25.2 5.0 32 487-518 36-67 (115)
425 KOG1070 rRNA processing protei 27.8 5.8E+02 0.012 31.3 11.3 69 485-554 1493-1561(1710)
426 PF12583 TPPII_N: Tripeptidyl 27.8 2E+02 0.0043 24.9 5.8 48 486-533 73-120 (139)
427 smart00745 MIT Microtubule Int 27.5 1.3E+02 0.0028 23.0 4.6 15 505-519 5-19 (77)
428 PRK10316 hypothetical protein; 27.1 3.7E+02 0.0079 25.2 8.0 60 491-550 129-196 (209)
429 PHA02537 M terminase endonucle 26.7 89 0.0019 29.9 4.1 57 499-555 93-210 (230)
430 PF14689 SPOB_a: Sensor_kinase 26.5 1.6E+02 0.0035 21.6 4.7 43 509-551 9-51 (62)
431 PF13041 PPR_2: PPR repeat fam 26.5 2.1E+02 0.0046 19.4 5.9 30 490-519 4-33 (50)
432 KOG2422 Uncharacterized conser 26.4 2.7E+02 0.0058 30.4 7.8 74 485-558 280-378 (665)
433 PF11817 Foie-gras_1: Foie gra 26.3 2.5E+02 0.0055 27.1 7.4 31 523-553 178-208 (247)
434 PF09986 DUF2225: Uncharacteri 26.2 4.8E+02 0.011 24.6 9.1 35 485-519 161-195 (214)
435 KOG2047 mRNA splicing factor [ 26.0 9.2E+02 0.02 27.0 11.7 83 484-566 420-523 (835)
436 KOG3617 WD40 and TPR repeat-co 25.8 1.3E+02 0.0028 34.2 5.6 43 507-549 837-884 (1416)
437 PF08238 Sel1: Sel1 repeat; I 25.7 1.6E+02 0.0035 18.4 4.2 14 539-552 24-37 (39)
438 KOG2396 HAT (Half-A-TPR) repea 25.6 2.7E+02 0.0058 29.9 7.6 51 508-558 90-140 (568)
439 KOG0687 26S proteasome regulat 25.5 5.8E+02 0.013 25.9 9.5 72 486-557 101-178 (393)
440 smart00671 SEL1 Sel1-like repe 24.7 1.4E+02 0.003 18.3 3.7 26 526-551 4-33 (36)
441 KOG4814 Uncharacterized conser 24.6 3E+02 0.0066 30.5 7.9 66 487-552 392-457 (872)
442 KOG2300 Uncharacterized conser 24.2 3E+02 0.0065 29.5 7.5 70 484-553 440-515 (629)
443 COG1049 AcnB Aconitase B [Ener 23.8 33 0.00072 37.0 0.7 32 189-223 383-414 (852)
444 COG3898 Uncharacterized membra 23.6 6E+02 0.013 26.6 9.3 63 491-554 232-294 (531)
445 KOG0276 Vesicle coat complex C 23.3 2.3E+02 0.005 31.1 6.7 63 487-549 664-747 (794)
446 KOG1811 Predicted Zn2+-binding 23.3 4.2E+02 0.0091 29.1 8.5 52 499-553 566-617 (1141)
447 KOG2114 Vacuolar assembly/sort 23.1 1.7E+02 0.0036 33.4 5.8 76 487-568 366-445 (933)
448 cd02684 MIT_2 MIT: domain cont 23.1 3.5E+02 0.0076 20.7 6.3 15 505-519 3-17 (75)
449 COG4649 Uncharacterized protei 22.9 5.4E+02 0.012 23.7 7.9 82 490-573 95-186 (221)
450 cd02678 MIT_VPS4 MIT: domain c 22.8 1.8E+02 0.0039 22.2 4.5 15 505-519 3-17 (75)
451 KOG1914 mRNA cleavage and poly 22.4 6.3E+02 0.014 27.6 9.6 55 498-552 410-464 (656)
452 smart00101 14_3_3 14-3-3 homol 22.4 3.2E+02 0.0069 26.5 7.1 47 505-551 144-199 (244)
453 cd02656 MIT MIT: domain contai 22.3 1.9E+02 0.0041 22.0 4.6 15 505-519 3-17 (75)
454 KOG0292 Vesicle coat complex C 22.1 4.2E+02 0.009 30.7 8.5 71 487-557 989-1118(1202)
455 COG0790 FOG: TPR repeat, SEL1 22.0 4.8E+02 0.01 25.5 8.8 67 488-557 186-271 (292)
456 KOG1550 Extracellular protein 21.6 3.9E+02 0.0084 29.4 8.6 48 504-553 343-394 (552)
457 KOG0985 Vesicle coat protein c 21.2 5.1E+02 0.011 30.6 9.1 62 486-552 1101-1162(1666)
458 cd00280 TRFH Telomeric Repeat 21.2 2.1E+02 0.0046 26.4 5.2 50 495-545 117-166 (200)
459 COG0790 FOG: TPR repeat, SEL1 20.8 3.5E+02 0.0076 26.5 7.5 31 522-552 108-142 (292)
460 KOG1497 COP9 signalosome, subu 20.4 8.8E+02 0.019 24.6 9.5 66 488-553 143-214 (399)
461 PF09477 Type_III_YscG: Bacter 20.1 5.2E+02 0.011 21.6 7.8 56 495-555 46-102 (116)
No 1
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-91 Score=734.16 Aligned_cols=423 Identities=26% Similarity=0.336 Sum_probs=339.8
Q ss_pred HHHHhhc-----hhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCC--CCC-------CCCCCCCCCCceEEeeccccc
Q 008170 21 IGVSVVG-----FVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFP--QPP-------PPAARQPLAGLKFAIKDVFDV 86 (575)
Q Consensus 21 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~a~-------~~~~~gpL~Gvpi~vKD~~~~ 86 (575)
++.+|++ .+|++|+++.+++||++.|+.+|||+....+.++. +|+ .+...|||+||||+|||||+|
T Consensus 8 ~~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~~na~~~~~~e~a~~~~~A~~~d~~~~~g~~~gpL~GvPiavKDn~~~ 87 (475)
T COG0154 8 TAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLAAGEPLGPLAGVPIAVKDNIDT 87 (475)
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeChhhcchHHHHHHHHHHHhcCCCCCCcCCceEEEeecccc
Confidence 4555554 39999999999999999999999999999886543 332 234568999999999999999
Q ss_pred CCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 008170 87 KGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAV 166 (575)
Q Consensus 87 ~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaV 166 (575)
+|++||+||+.+.+ +++.+||++|+||+++||||+||||||||+|+.+|+|++||+|+||||++|+||||||||||||
T Consensus 88 ~G~~Tt~gS~~l~~--~~p~~DA~vV~rL~~aGaviiGKTNm~Efa~g~~~~~s~~G~t~NP~~~~~~pGGSSgGSAaAV 165 (475)
T COG0154 88 AGLPTTAGSKALED--YVPPYDATVVERLRAAGAVILGKTNMDEFAMGSSTENSAFGPTRNPWNLERVPGGSSGGSAAAV 165 (475)
T ss_pred CCCccCccChhhcc--CCCCcCcHHHHHHHHCCCEEEeecCCchhhcCCCCCCCCCCCCCCCCCCCCCCCcCchHHHHHH
Confidence 99999999999975 5779999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc----
Q 008170 167 AAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP---- 242 (575)
Q Consensus 167 Aag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~---- 242 (575)
|+|++++|||||||||||+|||||||||||||+||||+.|++|+++++|++|||+|||+|++.+++++.+.+..+.
T Consensus 166 Aag~~~~alGSDtGGSIR~PAa~cGvvGlKPT~Grvsr~g~~~~a~sld~~GplartV~D~a~l~~v~~g~D~~d~~~~~ 245 (475)
T COG0154 166 AAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDSPLPP 245 (475)
T ss_pred HhCCcchhcccCCCCchhhhhhhhCceeeCCCCCccCCCCCccccCCcCccCcccCCHHHHHHHHHHHcCCCCccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988654330
Q ss_pred ------------ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCC
Q 008170 243 ------------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPEN 310 (575)
Q Consensus 243 ------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~ 310 (575)
....|+.++.+.... ...++++.+.+.++++.|+..+. +.++..+|.+.....
T Consensus 246 ~~~~~~~~~~~~~~~lrigv~~~~~~~-~~~~~~v~~~~~~a~~~l~~~Ga-------~v~~v~lp~~~~~~~------- 310 (475)
T COG0154 246 PPPVPPALAGKDLKGLRIGVPKELGGG-GPLDPDVRAAFEAAVKALEAAGA-------EVVEVSLPLLSDDYA------- 310 (475)
T ss_pred ccCccchhhccCCCCcEEEEECccccc-CCCcHHHHHHHHHHHHHHHHCCC-------EEEeccCCchhhhhh-------
Confidence 112356666654321 12345889999999999874332 111233443221000
Q ss_pred chhHHHHHHHHHHHHHhhhhhhhHHH--HHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHH---HHHHHHHHhCCC
Q 008170 311 GTATLKALSSVMLSLQRYEFKTIYEE--WVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNE---MRAALQRLLKDD 385 (575)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~e~~~~~~~--~~~~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~---~~~~~~~~~~~~ 385 (575)
...+. ......+.+..+.. +.......+++++++++..+..++..+|..+...|.. +++.+.++|+++
T Consensus 311 ----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ri~~G~~~~~~~~~~a~~~~~~~~~i~~~~~~~f~~~ 383 (475)
T COG0154 311 ----LAAYY---LARFDGERYGLRAADLYGKTRAEGFGPEVKRRIMLGTYLLSAGYYDAYYRRAQKTLIRRAFDKLFEEV 383 (475)
T ss_pred ----hhHHH---HHHhhhhhhhhcchhhhhhhhhhcccHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 00000 00000011111111 4444556789999999999999999999988888844 499999999999
Q ss_pred CEEEecCCCCCCCcCCc-cc-ccchhhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHhHHHHH
Q 008170 386 KILVIPTVSDPPLKLNT-KK-TYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDL 462 (575)
Q Consensus 386 DvLl~Pt~~~~ap~~~~-~~-~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~~a~~~ 462 (575)
|+||+||+|.+||++++ .. .........+..+|.++|++|+|+||||+|+. +|||+||||+|++|+|..||+++.++
T Consensus 384 D~ll~Pt~~~~a~~ig~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlqlig~~~~d~~LL~~a~~~ 463 (475)
T COG0154 384 DVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTADGLPVGLQLIGPAFDDATLLRLAAAL 463 (475)
T ss_pred CEEEeCCCCCCCcccccccccccCHHHHhhhccccccccccCCCeEEeccCCCCCCCCeeEEEecCCCCHHHHHHHHHHH
Confidence 99999999999999997 21 11122222233689999999999999999998 69999999999999999999999999
Q ss_pred HHHhh
Q 008170 463 YDSLQ 467 (575)
Q Consensus 463 ~~~~~ 467 (575)
|+...
T Consensus 464 E~~~~ 468 (475)
T COG0154 464 EQALG 468 (475)
T ss_pred HHhhC
Confidence 98654
No 2
>PLN02722 indole-3-acetamide amidohydrolase
Probab=100.00 E-value=2.8e-90 Score=719.60 Aligned_cols=417 Identities=51% Similarity=0.869 Sum_probs=337.3
Q ss_pred CCCCcCcEEeeccCCCCCCCCCCCCCCCCCCceEEeecccccCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEe
Q 008170 45 GRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIG 124 (575)
Q Consensus 45 ~~~~~~a~~~~~~~~~~~~a~~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~G 124 (575)
.|+.+|||++.+..+. ......||||||||+|||||+++|++||+||+.|.+.+.++.+||++|+||++||||++|
T Consensus 3 ~~~~~~a~~~~~~~~~----~~~~~~gpL~GvPiaVKD~~~v~G~~Tt~GS~~~~~~~~~~~~dA~vV~rL~~AGAiilG 78 (422)
T PLN02722 3 TNPDYGAFMEKFVLSP----TSSSHDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCVG 78 (422)
T ss_pred cCCCCCcceeeccccC----CCCCCCCCCCCCeEEEEcccccCCCccCCCCHHHHhcCCCCCCChHHHHHHHHCCCEEEE
Confidence 5778999999864321 112456899999999999999999999999998874334567999999999999999999
Q ss_pred ecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCccccccccccceeeeCCCCCccC
Q 008170 125 KTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSM 204 (575)
Q Consensus 125 Ktn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~ 204 (575)
||||+||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+|||||||||||+|||||||||||||+||||+
T Consensus 79 KTn~~Efa~~~~g~n~~~G~t~NP~~~~r~pGGSSsGSAaAVAaG~~p~AlGtDtgGSIRiPAa~cGvvG~KPT~G~vp~ 158 (422)
T PLN02722 79 KTIMDEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVST 158 (422)
T ss_pred EechhhHhhCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEeecCCCcccccChhHcceEEEecCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCcccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCC-Cc
Q 008170 205 IGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQN-PE 283 (575)
Q Consensus 205 ~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~-~~ 283 (575)
.|++|+++++|++|||+|+++|++.+++++.+.+..+...+.++.+..+.+.......+++.+.++++++.+.+.+. ++
T Consensus 159 ~G~~pla~sld~~G~~ar~v~D~a~~~~~l~g~~~~d~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~ 238 (422)
T PLN02722 159 VGVIPMAQSFDTVGWFARDPVILKRVGHVLLQQPDVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSVEKLFGGGDIVK 238 (422)
T ss_pred CCCCcccCCCCcccceeCCHHHHHHHHHHHcCCCCCCCcCCceEEechhhhhhcccccHHHHHHHHHHHHHHhcCCCeee
Confidence 99999999999999999999999999999987765555556677776554321122235677788888888775442 23
Q ss_pred cccccchhhccCcchHHhhhcc-CCCCCchhHHHHHHHHHHHHHhhhhhhhHHHHHHHcCCCCCHHHHHHHHHHhcCCHH
Q 008170 284 HMNVGQYIASNVPSLKGLRAQS-TSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQD 362 (575)
Q Consensus 284 ~~~~~~~v~~~~p~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~s~~ 362 (575)
..++...++...+.+..+...+ ...+........+...+..++.+|+...+..+++...+.+++.++.+++.+..++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~s~~ 318 (422)
T PLN02722 239 HVNLGDYVEDKVPSLKHFMSKEIKEQEYNIPSLAALSSAMRLLQRYEFKINHGEWITAVKPEFGPGISERIWEAVRTTEE 318 (422)
T ss_pred ecchhHHHHHhHHHHHHHhhcccccceecchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHhccCCHH
Confidence 3333333333333333221111 011111222333334445566667777888888777788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCcccccccccCCCCcc
Q 008170 363 NIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPIS 442 (575)
Q Consensus 363 ~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvG 442 (575)
+|.++++.|.++++.++++|+++|+||+||+|.+||+++........+...++.+|.++|++|+|+||||+|..+|||+|
T Consensus 319 ~y~~a~~~r~~~~~~~~~~~~~~D~Ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvG 398 (422)
T PLN02722 319 KIDACQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADPTTLESFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVS 398 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcccCcchHHHHHHHHHHhhhcccccCCCEEEEeCCCCCCCCEE
Confidence 99999999999999999999999999999999999988743222223333556689999999999999999998999999
Q ss_pred cccccccCCchhHHhHHHHHHHH
Q 008170 443 ISFITYHGGDKFLLDTVLDLYDS 465 (575)
Q Consensus 443 lqivg~~~~d~~ll~~a~~~~~~ 465 (575)
|||+|++++|..||++++.+...
T Consensus 399 lqivg~~~~D~~lL~~a~~l~~~ 421 (422)
T PLN02722 399 VSLLAKHGSDGFLLNLVESLYGT 421 (422)
T ss_pred EEEECCCCChHHHHHHHHHHHhh
Confidence 99999999999999999988653
No 3
>TIGR02715 amido_AtzE amidohydrolase, AtzE family. Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.
Probab=100.00 E-value=3.9e-90 Score=729.76 Aligned_cols=407 Identities=26% Similarity=0.363 Sum_probs=336.4
Q ss_pred chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCCccccCCChhhh
Q 008170 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK 99 (575)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~ 99 (575)
+.+|++|+++.+++||++.|+.+|||++.++++++++|+ .+...||||||||+|||||+++|++||+||+.+.
T Consensus 12 g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~ 91 (452)
T TIGR02715 12 GRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAAGSPLGPLAGVPFAVKNLFDVAGLTTLAGAKINR 91 (452)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEeccccCCceeCcCChhhc
Confidence 449999999999999999999999999998887766553 3456799999999999999999999999999987
Q ss_pred ccCCCC-CCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccC
Q 008170 100 RDHHEA-ERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTD 178 (575)
Q Consensus 100 ~~~~~~-~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtD 178 (575)
+ .++ .+||++|+||++||||++||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++++|||||
T Consensus 92 ~--~~p~~~dA~vV~rL~~AGAii~GkTn~~Ef~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAag~~~~alGtD 169 (452)
T TIGR02715 92 D--LAPAKRDATLVQRLSAAGAVLVGALNMDEFAYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSD 169 (452)
T ss_pred c--CCCCCCCHHHHHHHHHCCCEEEEeccCHhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHCCCCceEEeeC
Confidence 4 455 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc----------------
Q 008170 179 TIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP---------------- 242 (575)
Q Consensus 179 tgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~---------------- 242 (575)
||||||||||||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..+.
T Consensus 170 tgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~~~~d~~~~~~p~~~~~~~~~~ 249 (452)
T TIGR02715 170 TNGSIRVPASLCGVFGLKPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDVMQGPDPQDPFCTDRPAEPTVPLLPA 249 (452)
T ss_pred CCCcchhhHHHhCceeeeCCCCCccCCCCCCCccccCcccCeeCCHHHHHHHHHHhcCCCCCCcccccCCCcchhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999886532221
Q ss_pred -ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhHHHHHHHH
Q 008170 243 -RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSV 321 (575)
Q Consensus 243 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~ 321 (575)
.++.|+.+..+.+. ...++++.++++++++.|..... + ..|..... ...
T Consensus 250 ~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~~~---------v--~~~~~~~~-----------------~~~ 299 (452)
T TIGR02715 250 GISGLRIAVLGGWFQ--QNADPEALAAVGRVAKALGATTI---------V--ELPDAERA-----------------RAA 299 (452)
T ss_pred CCCCCEEEEECcccc--CCCCHHHHHHHHHHHHhcCCeee---------e--cCCchHHH-----------------HHH
Confidence 12235555544331 22467889999999888732110 1 11221110 001
Q ss_pred HHHHHhhhhhhhHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCC
Q 008170 322 MLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLN 401 (575)
Q Consensus 322 ~~~l~~~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~ 401 (575)
+..+...|....+..+++...+.+++.++.++..+..++..+|.++++.|+++++.++++|+++|+||+||+|.+||+++
T Consensus 300 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~ 379 (452)
T TIGR02715 300 AFVITASEGGNLHLDALRTRPQDFDPATRDRLLAGALLPASWYAQAQRFRHWFRDAIRELFQRVDVLIAPATPCSAPLIG 379 (452)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhcCHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcCc
Confidence 11122234444455555555667899999999888889999999999999999999999999999999999999999987
Q ss_pred cccc--c--chhhHhhhhccccccccCCCCcccccccccCCCCcccccccccCCchhHHhHHHHHHHH
Q 008170 402 TKKT--Y--SAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDS 465 (575)
Q Consensus 402 ~~~~--~--~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~ 465 (575)
.... . ...+...+..||.+||++|+|++|||+|..+|||+||||+|++++|..||+++.++|+.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlQivg~~~~D~~lL~~a~~le~~ 447 (452)
T TIGR02715 380 QETMIIDGVPVPVRANLGIFTQPISFAGLPVLAAPLPRPGRLPIGVQLIAAPWREDLCLRAAAVLERQ 447 (452)
T ss_pred ccccccCccchhhhhhHHhcCccchhcCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 5210 1 11111233458999999999999999999899999999999999999999999999874
No 4
>PRK09201 amidase; Provisional
Probab=100.00 E-value=6.6e-90 Score=729.79 Aligned_cols=407 Identities=26% Similarity=0.357 Sum_probs=336.7
Q ss_pred chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCCccccCCChhhh
Q 008170 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK 99 (575)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~ 99 (575)
+.+|++|+++.+++||++.|+.+|||++.++++++++|+ .+..+||||||||+|||+|+++|++||+||+.+.
T Consensus 19 g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~ 98 (465)
T PRK09201 19 GELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAGEPLGPLAGVPFAVKNLFDVAGLTTLAGSKINR 98 (465)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCceEEEEeccccCCcccCcCChhhc
Confidence 449999999999999999999999999998877666553 3456799999999999999999999999999987
Q ss_pred ccCCCC-CCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccC
Q 008170 100 RDHHEA-ERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTD 178 (575)
Q Consensus 100 ~~~~~~-~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtD 178 (575)
+ .++ .+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++++|||||
T Consensus 99 ~--~~~~~~dA~vV~~Lr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAaG~~~~alGtD 176 (465)
T PRK09201 99 D--RPPATRDATAVRRLEAAGAVLVGALNMDEYAYGFTTENSHYGATRNPHDLTRIAGGSSGGSAAAVAAGLVPFTLGSD 176 (465)
T ss_pred c--CCCCCCChHHHHHHHHCCCEEEEecChHHHhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHcCCCceEEecC
Confidence 5 455 6899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc----------------
Q 008170 179 TIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP---------------- 242 (575)
Q Consensus 179 tgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~---------------- 242 (575)
||||||+|||||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..++
T Consensus 177 tgGSIRiPAa~cGv~G~KPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~~~~~~~~~~~~~ 256 (465)
T PRK09201 177 TNGSIRVPASLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDVLQGPDPQDPFQADRPAEPTAPLLDR 256 (465)
T ss_pred CCCcchhhhHHhCceeeeCCCCccCCCCCCCcccccCcccCccCCHHHHHHHHHHhcCCCCCCcccccCCCcchhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999886542221
Q ss_pred -ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhHHHHHHHH
Q 008170 243 -RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSV 321 (575)
Q Consensus 243 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~ 321 (575)
.++.++.+..+.+ ....++++.++++++++.|..... + ..|..... ...
T Consensus 257 ~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~~~---v--------~~~~~~~~-----------------~~~ 306 (465)
T PRK09201 257 GAEGLRIAVLGGYF--AQWADPEARAAVDRVAKALGATRE---V--------ELPEAARA-----------------RAA 306 (465)
T ss_pred CCCCCEEEEECccc--cCCCCHHHHHHHHHHHHHccCcee---e--------cCCchhHH-----------------HHH
Confidence 1223555554433 122467889999999888732110 1 11221100 001
Q ss_pred HHHHHhhhhhhhHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCC
Q 008170 322 MLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLN 401 (575)
Q Consensus 322 ~~~l~~~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~ 401 (575)
+..+...|....+..+++...+.+++.++.++..+..++..+|.++++.|+.+++.++++|+++|+||+||+|.+||+++
T Consensus 307 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~ 386 (465)
T PRK09201 307 AFIITASEGGNLHLPALRTRPQDFDPASRDRLLAGAMLPAAWYVQAQRFRRWFRQAVLELFEHVDVLIAPATPCSAPLIG 386 (465)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCccc
Confidence 11222334444455555555667899999999999889999999999999999999999999999999999999999997
Q ss_pred cccc---cc-hhhHhhhhccccccccCCCCcccccccccCCCCcccccccccCCchhHHhHHHHHHHH
Q 008170 402 TKKT---YS-AEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDS 465 (575)
Q Consensus 402 ~~~~---~~-~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~ 465 (575)
+... .. ..+...+..||.+||++|+|++|||+|..+|||+||||+|++++|..||+++..+|+.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQivg~~~~D~~lL~~A~~le~~ 454 (465)
T PRK09201 387 QETMRIDGVELPVRANLGILTQPISFIGLPVVAVPLRTPGGLPIGVQLIAAPWREDLALRAAAALEQQ 454 (465)
T ss_pred ccccccCcchhhhhhhHHHhCccccccCCCeEEEeCCCCCCcCeEEEEECCCCCHHHHHHHHHHHHhh
Confidence 5321 11 1111233458999999999999999998899999999999999999999999999873
No 5
>PRK06102 hypothetical protein; Provisional
Probab=100.00 E-value=6.2e-89 Score=719.80 Aligned_cols=414 Identities=30% Similarity=0.398 Sum_probs=335.1
Q ss_pred chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCCccccCCChhhh
Q 008170 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK 99 (575)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~ 99 (575)
+.+|++|+++.+++||+++|+ +|||++.++++++++|+ .+..+||||||||+|||+|+|+|++||+||+.+.
T Consensus 18 g~~s~~ev~~~~l~ri~~~~~-~na~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~ 96 (452)
T PRK06102 18 GALDPVQVAEQALDAIASYAD-QAVFISLTEERAMREAEASSARWRAGRSLGLLDGIPIAWKDLFDVAGSVTTAGSVVLA 96 (452)
T ss_pred CCCCHHHHHHHHHHHHHhhCC-CCEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEeccccCCCccCcCChhhc
Confidence 449999999999999999986 89999998877665553 3456799999999999999999999999999887
Q ss_pred ccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCC--CCCCCCCChHHHHHHHhcCCceeecc
Q 008170 100 RDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMP--SHIPGGSSSGSAVAVAAQLVDFALGT 177 (575)
Q Consensus 100 ~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~--~~~~GGSSgGsaaaVAag~~~~aiGt 177 (575)
+ +.++.+||++|+||++|||||+||||||||+++.+|.|++||+|+||||+ +|+|||||||||||||+|++++++||
T Consensus 97 ~-~~~~~~dA~vV~rL~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~~~GGSSgGsAaaVAaG~~~~alGt 175 (452)
T PRK06102 97 N-AAPASRDAAVVALLARAGMVSIGRTNMSEFAFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAVAVAAGLVPVAMGT 175 (452)
T ss_pred c-CCCCCCCHHHHHHHHHCCCEEEEeechHhHhcCCCCCCCCCCCCCCCCCCCCCcCCCCCcHHHHHHHHcCCCceEEec
Confidence 4 23347999999999999999999999999999999999999999999996 79999999999999999999999999
Q ss_pred CCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc----ccCceEEeccc
Q 008170 178 DTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----RRARRLIFADD 253 (575)
Q Consensus 178 DtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----~~~~~l~~~~~ 253 (575)
||||||||||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..+. ....++.+..+
T Consensus 176 DtgGSiRiPAa~cGv~G~KPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~~~~~~~~~~~~~ri~~~~~ 255 (452)
T PRK06102 176 DTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDAVWIDAAMRGLTAPDVVRRPLAGLRLVVPET 255 (452)
T ss_pred CCCCcchhhhHHhCceeEecCCCcccCCCCcccccccCcccCccCCHHHHHHHHHHHcCCCCccccccCCCCCEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999998876533221 12235555444
Q ss_pred hhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchh-hccCcchHHhhhccCCCCCchhHHHHHHHHHHHHHhhhhhh
Q 008170 254 IFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYI-ASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKT 332 (575)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v-~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~ 332 (575)
.+ ....++++.+.++++++.|...+. .| +..+|.+.+... +...+..+...|...
T Consensus 256 ~~--~~~~~~~v~~~~~~a~~~L~~~G~--------~v~~~~~~~~~~~~~--------------~~~~~~~~~~~e~~~ 311 (452)
T PRK06102 256 VV--FDDAEPGVRAAFEAAVERLQAAGA--------LVERQAFPAFQEILD--------------LIARHGWLVTAEAFA 311 (452)
T ss_pred hh--cccCCHHHHHHHHHHHHHHHhCCC--------EEEecCCccHHHHHH--------------HHHHHHHHHHHHHHH
Confidence 32 123467899999999999864332 11 112233221110 000111122234444
Q ss_pred hHHHHHHH-cCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCCcccccchhh-
Q 008170 333 IYEEWVKS-AKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEF- 410 (575)
Q Consensus 333 ~~~~~~~~-~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~- 410 (575)
.+..++.. ....+++.++.++..+..++..+|.++++.|.++++.+.++|+ +|+||+||+|++||++++.......+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~-~D~ll~Pt~~~~ap~~~~~~~~~~~~~ 390 (452)
T PRK06102 312 LHQERLDGPDAARMDPRVVKRTRLGRKITASDYIALLEARERLIAQVTRELG-GALLATPTVAHVAPPLAPLEADDDLFF 390 (452)
T ss_pred HHHHHhhccchhhCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHc-CCEEEeCCCCCCCCCccccccCchhhh
Confidence 44444433 3456889999999888889999999999999999999999999 89999999999999987522111111
Q ss_pred --HhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHhHHHHHHHHhh
Q 008170 411 --HDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDSLQ 467 (575)
Q Consensus 411 --~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~~a~~~~~~~~ 467 (575)
...++.||.+||++|+|++|||+|+. +|||+||||+|++++|..||+++.++|+.+.
T Consensus 391 ~~~~~~~~~t~~~nl~g~PaisvP~g~~~~glPvGlQivg~~~~D~~lL~~a~~le~~l~ 450 (452)
T PRK06102 391 ATNLKTLRNTMPGNFLDMCGVSLPCGTGAAGMPVGLLLSAPAGRDERLLRAALAVEAVIR 450 (452)
T ss_pred hhhhhhhhcCccccccCCCeEEEecCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 12334589999999999999999987 8999999999999999999999999998653
No 6
>PRK06169 putative amidase; Provisional
Probab=100.00 E-value=6.3e-89 Score=723.25 Aligned_cols=416 Identities=19% Similarity=0.229 Sum_probs=335.7
Q ss_pred HHHHhh-----chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCC
Q 008170 21 IGVSVV-----GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKG 88 (575)
Q Consensus 21 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G 88 (575)
++.+|+ +.+|++|+++.+++||++.|+.+|||++.++++++++|+ .+..+||||||||+|||||+++|
T Consensus 8 ~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G 87 (466)
T PRK06169 8 TAVELLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAARASEERWRRGEPCGLLDGVPVSIKDIFLTRG 87 (466)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeCHHHHHHHHHHHHHHHhcCCCCCCcCCceEEEecccccCC
Confidence 555555 349999999999999999999999999998776665543 24557999999999999999999
Q ss_pred ccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHh
Q 008170 89 YVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAA 168 (575)
Q Consensus 89 ~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAa 168 (575)
++||+||+.+.+ +.++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||||||+
T Consensus 88 ~~tt~Gs~~~~~-~~p~~~da~vV~~Lr~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAa 166 (466)
T PRK06169 88 WPTLRGSRAIDA-DGPWDVDAPAVARLREAGAVLLGKTTTPEFGWKGVTDSPLYGITRNPWDTRLTAGGSSGGAAAAVAL 166 (466)
T ss_pred cccCccChhhcc-CCCCCCCHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHc
Confidence 999999999874 3455799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc------
Q 008170 169 QLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP------ 242 (575)
Q Consensus 169 g~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~------ 242 (575)
|++++|||||||||||+|||||||||||||+||||+.|+.|.+ ++|++|||+|+++|+..+++++.+.+..++
T Consensus 167 G~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~vs~~g~~~~~-~~d~~Gp~arsv~D~~~~~~~l~g~~~~d~~~~~~~ 245 (466)
T PRK06169 167 GMGPLSVGTDGGGSVRIPASFCGTFGFKPTFGRVPLYPASPFG-TLAHVGPMTRTVADAALLLDVIARPDARDWSALPPP 245 (466)
T ss_pred CCCceeeecCCCCcchhchHhhCceeecCCCCccCCCCCCCCc-cccccCCeeCCHHHHHHHHHHhcCCCCCCCcccCCC
Confidence 9999999999999999999999999999999999999998886 899999999999999999999876432211
Q ss_pred -----------ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCc
Q 008170 243 -----------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENG 311 (575)
Q Consensus 243 -----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~ 311 (575)
.++.++.+..+.. ....++++.++++++++.|+..+. .+++..+.+...
T Consensus 246 ~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~---------- 305 (466)
T PRK06169 246 TTSFLDALDRDVRGLRIAYSPTLG--YVDVDPEVAALVAQAVQRLAALGA--------RVEEVDPGFSDP---------- 305 (466)
T ss_pred CcchhhhhccCCCCCEEEEECCcC--CCCCCHHHHHHHHHHHHHHHHcCC--------EEEEeCCCcchH----------
Confidence 1223555544322 122467899999999999874332 111111111110
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEec
Q 008170 312 TATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIP 391 (575)
Q Consensus 312 ~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~P 391 (575)
. ..+..+...+....+..+.......+++.++.+++.+..++..+|.++++.|+++++.|.++|+++|+||+|
T Consensus 306 ---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~P 378 (466)
T PRK06169 306 ---V----EAFHVLWFAGAARLLRALPPGQRALLDPGLRRIAERGATYSASDYLDATAVRAALGARMGAFHERYDLLLTP 378 (466)
T ss_pred ---H----HHHHHHHHHHHHHHHHHhhhcchhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeC
Confidence 0 000111111222223333333445688999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCCcccccc--hhhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHhHHHHHHHH
Q 008170 392 TVSDPPLKLNTKKTYS--AEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDS 465 (575)
Q Consensus 392 t~~~~ap~~~~~~~~~--~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~~a~~~~~~ 465 (575)
|+|++||+++...... ......+..||.++|++|+|++|||+|.. +|||+||||+|++++|..||++++.+|+.
T Consensus 379 t~~~~ap~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~d~~lL~~a~~le~~ 455 (466)
T PRK06169 379 TLPIPAFEAGHDVPPGSGLTDWTQWTPFTYPFNLTQQPAASVPCGFTAAGLPVGLQIVGPRHSDDLVLRVARAYEQA 455 (466)
T ss_pred CCCCCCCCCCccCCCccchhhhhhhhcccccccccCCCeEEEecCcCCCCCceEEEEecCCCcHHHHHHHHHHHHhh
Confidence 9999999987532111 11112334589999999999999999987 89999999999999999999999999875
No 7
>PRK07056 amidase; Provisional
Probab=100.00 E-value=8.6e-89 Score=719.11 Aligned_cols=415 Identities=28% Similarity=0.353 Sum_probs=340.4
Q ss_pred chhHHHHHHHHhhcccccCCCC-cCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCCccccCCChhh
Q 008170 27 GFVVLAETLRRRRNPKLNGRVD-FGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDW 98 (575)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~ 98 (575)
+.+|++|+++.+++||+++|+. +|||++.++++++++|+ .+...||||||||+|||+|+++|++||+||+.+
T Consensus 18 g~~s~~ev~~~~l~ri~~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~ 97 (454)
T PRK07056 18 GRTTSRALVEAALARIADPAGEGARVFTHVDADAARAAADAADALRAAGAAPSPLAGIPVSVKDLFDVAGQVTRAGSRVL 97 (454)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCCccEEEEeCHHHHHHHHHHHHHHHhCCCCCCCcCCCeEEEEeeeccCCCccCCCChhh
Confidence 4499999999999999999975 99999998777665553 345679999999999999999999999999998
Q ss_pred hccCCCC-CCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCC----CCCCCCCCCChHHHHHHHhcCCce
Q 008170 99 KRDHHEA-ERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQ----MPSHIPGGSSSGSAVAVAAQLVDF 173 (575)
Q Consensus 99 ~~~~~~~-~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~----~~~~~~GGSSgGsaaaVAag~~~~ 173 (575)
.+ .++ .+||++|+|||+||||++||||||||+++.+|+|++||+|+||| |++|+|||||||||||||+|++++
T Consensus 98 ~~--~~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~~~~~GGSSgGsAaaVAag~~~~ 175 (454)
T PRK07056 98 AD--APPAAADAPAVARLRRAGAVLIGRTNMTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSGAAVSVADGMAAA 175 (454)
T ss_pred cc--CCCCCCCHHHHHHHHHCCCEEEEeccchhHhhCCCCCCCCCCCCCCCCCCCCCCCcCCCCcchHHHHHHHcCCCce
Confidence 74 455 68999999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred eeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc----ccCceEE
Q 008170 174 ALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----RRARRLI 249 (575)
Q Consensus 174 aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----~~~~~l~ 249 (575)
|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.++.++ .++.|+.
T Consensus 176 alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~vl~g~d~~d~~~~~~~~lrig 255 (454)
T PRK07056 176 ALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLARSVACCALVDAVLAGEEPVVPAARPLEGLRLA 255 (454)
T ss_pred EEeeCCCCccccchHhhCceeeccCCCccCCCCcccCccccCcccCccCCHHHHHHHHHHhcCCCCCCcccccccCcEEE
Confidence 999999999999999999999999999999999999999999999999999999999999887654332 1234666
Q ss_pred eccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhHHHHHHHHHHHHHhhh
Q 008170 250 FADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYE 329 (575)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e 329 (575)
+..+.+ ....++++.+.++++++.|+..+. +.++..+|.+..... +.. ...+...|
T Consensus 256 ~~~~~~--~~~~~~~v~~~~~~a~~~L~~~G~-------~v~~~~~~~~~~~~~--------------~~~-~~~~~~~e 311 (454)
T PRK07056 256 VPTTVV--LDGLDATVAAAFERALKRLSAAGA-------IIEEIAFPELAELAE--------------INA-KGGFSAAE 311 (454)
T ss_pred Ecchhh--ccCCCHHHHHHHHHHHHHHHHCCC-------EEEEecCcchHHHHH--------------HHH-hhhHHHHH
Confidence 655442 122467899999999999874332 001112233221110 000 01112223
Q ss_pred hhhhHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCCcccccchh
Q 008170 330 FKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAE 409 (575)
Q Consensus 330 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~ 409 (575)
....+..+.......+++.++.++..+..++..+|.++++.|..+++.+.++|+++|+||+||+|.+||++++.......
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~ 391 (454)
T PRK07056 312 SYAWHRPLLARHRDQYDPRVAARILRGEPMSAADYIDLLAARAAWIARAAARLARFDALVMPTVPIVPPRIADLEADDAA 391 (454)
T ss_pred HHHHHHHHHhhhhhhCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCEEEECCCCCCCCCcccccccchh
Confidence 34444555555566789999999998888999999999999999999999999999999999999999998753211122
Q ss_pred hHh---hhhccccccccCCCCcccccccccCCCCcccccccccCCchhHHhHHHHHHHHhh
Q 008170 410 FHD---RTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQ 467 (575)
Q Consensus 410 ~~~---~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~~~ 467 (575)
+.. .++.||.+||++|+|++|||+|..+|||+||||+|++++|..||++++++|+.+.
T Consensus 392 ~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~glPvGlqivg~~~~D~~lL~~a~~le~~l~ 452 (454)
T PRK07056 392 FFRTNALLLRNPSLINFLDGCALSLPCHAPGEAPVGLMLAGAPGRDDRLLAIALAVEAVLR 452 (454)
T ss_pred hHHHHHHHhhcCccchhcCCCEEEEeCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 211 2335799999999999999999889999999999999999999999999998663
No 8
>PRK07487 amidase; Provisional
Probab=100.00 E-value=1e-88 Score=721.43 Aligned_cols=422 Identities=20% Similarity=0.218 Sum_probs=336.3
Q ss_pred hHHHHHHHhhch-----hHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeeccc
Q 008170 17 VWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVF 84 (575)
Q Consensus 17 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~ 84 (575)
++..|+.+|+.. +|++|+++.+++||++.|+.+|||++.++++++++|+ .+..+||||||||+|||+|
T Consensus 5 ~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~ 84 (469)
T PRK07487 5 LWRLSAAELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDDPGPLAGVPVTVKVNV 84 (469)
T ss_pred hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHhHHHHhcCCCCCCcCCCEEEEeccc
Confidence 444467776644 8999999999999999999999999998877666553 2456799999999999999
Q ss_pred ccCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHH
Q 008170 85 DVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAV 164 (575)
Q Consensus 85 ~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaa 164 (575)
+|+|++||+||+.+.+ .++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+||||||||||
T Consensus 85 ~v~G~~tt~Gs~~~~~--~~~~~da~vV~rLr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~~GGSSgGsAa 162 (469)
T PRK07487 85 DQAGFATTNGVRLQKD--LIAPADSPVVDNLRKAGAVIIGRTNTPAFSYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAAA 162 (469)
T ss_pred ccCCCccCcchHHhcC--CCCCCchHHHHHHHHCCCEEEEecChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Confidence 9999999999998874 67889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCC----C-CCCCccccccccCHHHHHHHHHHHccCCC
Q 008170 165 AVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLP----N-SQSLDTVGLLARNASILHRVGHVLLQLNA 239 (575)
Q Consensus 165 aVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p----~-~~~~d~~G~~ar~~~d~~~v~~~~~~~~~ 239 (575)
|||+|++++|||||||||||||||||||||||||+||||+.|+++ + +.++|++|||+||++|++.+++++.+.+.
T Consensus 163 AVAaG~~~~alGtDtgGSIRiPAa~cGvvGlKPT~G~is~~g~~~~~~~l~~~~~~~~Gplarsv~D~a~~~~~l~g~d~ 242 (469)
T PRK07487 163 AVAAGIGAIAHGTDIGGSIRYPAYACGVHGLRPTLGRVPAYNASSPERPIGAQLMSVQGPLARTVADLRLALAAMAAPDP 242 (469)
T ss_pred HHHcCCCceeeecCCCCccccchhhcCceeecCCCCccCCCCCCccccccccccccccCCeeCCHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999873 3 34789999999999999999999886543
Q ss_pred CCc----------ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhc--cCcchHHhhhccCC
Q 008170 240 VEP----------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIAS--NVPSLKGLRAQSTS 307 (575)
Q Consensus 240 ~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~--~~p~l~~~~~~~~~ 307 (575)
.++ ..+.|+.+..+.+. ...++++.++++++++.|+..+. .+++ ..|.+...
T Consensus 243 ~d~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~~------ 306 (469)
T PRK07487 243 RDPWWVPAPLEGPPRPKRVALCVRPDG--LDVDPEVEAALRDAARRLEDAGW--------TVEEVDDTPPLREA------ 306 (469)
T ss_pred CCCccCCCCccCCCCCcEEEEECCCCC--CCCCHHHHHHHHHHHHHHHHCCC--------EEEecCCCCchHHH------
Confidence 221 12346666554321 22467899999999998864332 1111 22322211
Q ss_pred CCCchhHHHHHHHHHHHHHhhhhhhhHHHHHHHc-CCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 008170 308 PENGTATLKALSSVMLSLQRYEFKTIYEEWVKSA-KPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDK 386 (575)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~-~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D 386 (575)
...+..+...+....+..+.... .+.+.+.+...+..+..++..+|.++++.|+.+++.+.++|+++|
T Consensus 307 -----------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D 375 (469)
T PRK07487 307 -----------AELQERLWLGDGYEALLAAAEAEGDPGALAALRGQRAKARPLDLAGYMNALARRATLTRQWQLFFEDYP 375 (469)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 11111122223333344443322 234556666666777788999999999999999999999999999
Q ss_pred EEEecCCCCCCCcCCcccccchhhHh--hhhccccccccCCCCcccccccccCCCCcccccccccCCchhHHhHHHHHHH
Q 008170 387 ILVIPTVSDPPLKLNTKKTYSAEFHD--RTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYD 464 (575)
Q Consensus 387 vLl~Pt~~~~ap~~~~~~~~~~~~~~--~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~ 464 (575)
+||+||+|++||+++........+.. ....+|.++|++|+|++|||+|+.+|||+||||+|++++|..||++++.+|+
T Consensus 376 ~ll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~lL~~a~~lE~ 455 (469)
T PRK07487 376 LLLMPVSAELPFPDDLDRQGAEGFRRVWEAQLPQIALPFMGLPGLSVPTGLVGGVPVGVQLVAGRFREDLCLAAGEAIEA 455 (469)
T ss_pred EEEcCCCCCCCCCCCCcCCchhhhhHHHHhhcccccccccCCCeEEEECccCCCcceeEEEeCCCCCHHHHHHHHHHHHH
Confidence 99999999999998743221122211 1112577899999999999999999999999999999999999999999988
Q ss_pred Hhh
Q 008170 465 SLQ 467 (575)
Q Consensus 465 ~~~ 467 (575)
.+.
T Consensus 456 ~~~ 458 (469)
T PRK07487 456 RGG 458 (469)
T ss_pred hhC
Confidence 543
No 9
>PRK05962 amidase; Validated
Probab=100.00 E-value=6.2e-88 Score=706.52 Aligned_cols=405 Identities=24% Similarity=0.342 Sum_probs=330.6
Q ss_pred HHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCCccccCCChhhhccCCCC-CC
Q 008170 36 RRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEA-ER 107 (575)
Q Consensus 36 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~~~~~-~~ 107 (575)
+.+++||+++|+.+|||++.++++++++|+ .+..+||||||||+|||||+|+|++||+||+.+.+ .++ .+
T Consensus 2 ~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~--~~~~~~ 79 (424)
T PRK05962 2 EATLARLAARAGEEHVFSKLYAERARAEADAADARRRAGRSLGPLDGRIVSIKDLFDVAGEPTLAGSVIRRD--APPAGA 79 (424)
T ss_pred HHHHHHHHhhCCcccEEEEECHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEEeeeecCCcccCCCChhhhc--CCCCcC
Confidence 578999999999999999998877665553 24567999999999999999999999999999874 455 68
Q ss_pred chHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCcccccc
Q 008170 108 TAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPA 187 (575)
Q Consensus 108 da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiRiPA 187 (575)
||++|+||+++||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++++|+|||||||||+||
T Consensus 80 dA~vV~rL~~aGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPA 159 (424)
T PRK05962 80 DALIVQRLRNAGAVIIGKTHMTEFAFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPA 159 (424)
T ss_pred ChHHHHHHHHCCCEEEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEEeeCCCCcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc----ccCceEEeccchhhhcCCCch
Q 008170 188 SFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----RRARRLIFADDIFQLSKVPKL 263 (575)
Q Consensus 188 a~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~ 263 (575)
+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..+. ..+.++.+..+.+ ....++
T Consensus 160 a~cGv~GlKPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~~~~~~vl~g~~~~~~~~~~~~~lrig~~~~~~--~~~~~~ 237 (424)
T PRK05962 160 ALNGLVGFKPTARRIPLEGAFPLSPSLDSIGPLARTVADCAAADAVMAGEKPIPLEVLPVAGLRIGLPKGYL--LADMEP 237 (424)
T ss_pred HhhCceeeecCCCceeCCCcccCccccCccccccCCHHHHHHHHHHHcCCCCCcccccCcCCcEEEEEcccc--cccCCH
Confidence 9999999999999999999999999999999999999999999999876543221 1234566655432 122467
Q ss_pred HHHHHHHHHHHHHhCCCCCccccccchhh-ccCcchHHhhhccCCCCCchhHHHHHHHHHHHHHhhhhhhhHHHHHHHcC
Q 008170 264 KTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAK 342 (575)
Q Consensus 264 ~~~~~~~~a~~~l~g~~~~~~~~~~~~v~-~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~ 342 (575)
++.+.++++++.|+..+. .++ ..+|.+.+. +.... ....+...+....+..+.+...
T Consensus 238 ~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~-------------~~~~~-~~~~~~~~e~~~~~~~~~~~~~ 295 (424)
T PRK05962 238 DVAAAFEASLAALEKAGA--------RIADLAIDDLIAR-------------LAEAT-RIGSIAGIEASHIHADWLADLD 295 (424)
T ss_pred HHHHHHHHHHHHHHHCCC--------EEEEeccchHHHH-------------HHHHH-HHhHHHHHHHHHHHHHHHhhch
Confidence 899999999998863332 111 112221100 00000 0011223344445555666566
Q ss_pred CCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCCcccccchhh---Hhhhhcccc
Q 008170 343 PRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEF---HDRTLVLSS 419 (575)
Q Consensus 343 ~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~---~~~~~~~t~ 419 (575)
..+++.++.++..+..++..+|.++++.|..+++.++++|+++|+||+||+|.+||+++........+ ...++.||.
T Consensus 296 ~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~ 375 (424)
T PRK05962 296 ANVDIRVKRPLSRRIKVPLEAYHRLMRTRAALARAMDERLAGFDMFALPATPIVAPTIASVSEDEEEYDRVENLLLRNTQ 375 (424)
T ss_pred hhCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCccccccchHHHHHHHHHHHhhCc
Confidence 77899999999988889999999999999999999999999999999999999999987532211112 222345899
Q ss_pred ccccCCCCcccccccccCCCCcccccccccCCchhHHhHHHHHHHHhh
Q 008170 420 IGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQ 467 (575)
Q Consensus 420 ~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~~~ 467 (575)
++|++|+|++|||+|. +|||+||||+|++++|..||++++.+|+.+.
T Consensus 376 ~~n~~G~Pa~svP~g~-~glPvGlqlvg~~~~D~~lL~~a~~le~~l~ 422 (424)
T PRK05962 376 VANQFDLCSITLPMPG-MALPAGLMLTARNGSDRRLLAAAASVEKLLE 422 (424)
T ss_pred CccccCCCeEEEECCC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999984 7999999999999999999999999998764
No 10
>PRK07486 amidase; Provisional
Probab=100.00 E-value=6.7e-88 Score=718.67 Aligned_cols=421 Identities=22% Similarity=0.259 Sum_probs=332.4
Q ss_pred HHHHHHhhch-----hHHHHHHHHhhcccccCCCCcCcEEeeccCC-CCCCCC-------CCCCCCCCCCceEEeecccc
Q 008170 19 VVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELI-PFPQPP-------PPAARQPLAGLKFAIKDVFD 85 (575)
Q Consensus 19 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~a~-------~~~~~gpL~Gvpi~vKD~~~ 85 (575)
..++++|+.. +|++|+++.+++||.+.|+.+|||++.++++ ++++|+ .+...||||||||+|||+|+
T Consensus 11 ~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~ 90 (484)
T PRK07486 11 RLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLAEAAEKDAALARGEYRGWLHGMPQAPKDLAP 90 (484)
T ss_pred hCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCceEEEeCccHHHHHHHHHHHHHHhcCCCCCCcCCCeEEEecccc
Confidence 3366666644 8999999999999999999999999986533 234332 34567999999999999999
Q ss_pred cCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHH
Q 008170 86 VKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVA 165 (575)
Q Consensus 86 ~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaa 165 (575)
++|++||+||+.+.+ .++.+||++|+||++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||
T Consensus 91 v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaa 168 (484)
T PRK07486 91 TKGIRTTLGSPIFAD--QVPQEDAIVVERMRAAGAIFIGKTNTPEFGLGSHTYNPVYGATRNPYDPSRSAGGSSGGAAAA 168 (484)
T ss_pred cCCcCcccccHhhCC--CCCCCcHHHHHHHHHCCCeeEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHH
Confidence 999999999999875 678899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCC-CCCCCCccccccccCHHHHHHHHHHHccCCCCCc--
Q 008170 166 VAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVL-PNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-- 242 (575)
Q Consensus 166 VAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~-p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-- 242 (575)
||+|++++|||||||||||+||+||||||||||+||||+.|.+ ++++++|++|||+||++|++.+++++.+.+..++
T Consensus 169 VAaG~~~~aiGtDtgGSIRiPAa~cGvvGlKPT~G~vs~~g~~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~ 248 (484)
T PRK07486 169 LALRMLPVADGSDMMGSLRNPAAFNNVYGFRPSQGRVPHGPGGDVFVQQLGTEGPMGRTVEDVALLLAVQAGYDPRDPLS 248 (484)
T ss_pred HHcCCCceEeecCCCCCeecchhhhCceeecCCCCcccCCCCcccccccccccCCeeCCHHHHHHHHHHHhCCCCCCCcc
Confidence 9999999999999999999999999999999999999999755 7899999999999999999999999876532221
Q ss_pred ---------------ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCC
Q 008170 243 ---------------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTS 307 (575)
Q Consensus 243 ---------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~ 307 (575)
..+.++.+..+.+. ....++++.++++++++.|+..+. .++...+.+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~------- 312 (484)
T PRK07486 249 LAEDPARFAQPLEADLRGKRIAWLGDWGG-YLPMEAGVLELCEAALATLRELGC--------DVEAALPAFPP------- 312 (484)
T ss_pred ccCCCcchhhHhccCCCCCEEEEeCcccC-CCCCCHHHHHHHHHHHHHHHHCCC--------EEEEeCCCcch-------
Confidence 12345655543321 112467889999999999864332 22211121100
Q ss_pred CCCchhHHHHHHHHHHHHHhhhhhhhHHHHHH--HcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 008170 308 PENGTATLKALSSVMLSLQRYEFKTIYEEWVK--SAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDD 385 (575)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~--~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~ 385 (575)
....+.+..+...+.......... .....+++.++.+++.+..++..+|.++++.|+.+++.+.++|+++
T Consensus 313 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~ 384 (484)
T PRK07486 313 --------ERLWRAWLTLRHFLVGGSLLALYRDPARRALLKPEAIWEIEGGLALTAAQVYEASVIRSAWYQALLRLFERY 384 (484)
T ss_pred --------HHHHHHHHHHHHHHHHHhHHHHhccccchhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 000011111111111111112211 1235678999999988888999999999999999999999999999
Q ss_pred CEEEecCCCCCCCcCCccc-----ccchhhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHhHH
Q 008170 386 KILVIPTVSDPPLKLNTKK-----TYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTV 459 (575)
Q Consensus 386 DvLl~Pt~~~~ap~~~~~~-----~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~~a 459 (575)
|+||+||+|.+||+++... .........+..+|.++|++|+|++|||+|.. +|||+||||+|++++|..||+++
T Consensus 385 D~ll~Pt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~glPvGlQlvg~~~~D~~lL~~a 464 (484)
T PRK07486 385 DFLALPTAQVFPFDAEWRWPRAIAGRAMDTYHRWMEVVVPATLAGLPAISVPVGFNAAGLPMGMQIIGPPRADLAVLQLA 464 (484)
T ss_pred CEEEcCCCCCCCCccccccccccccchhhhhhhhhcccccccccCCCeEEEECCcCCCCCceEEEEECCCCCHHHHHHHH
Confidence 9999999999998876421 00111112334578899999999999999987 89999999999999999999999
Q ss_pred HHHHHH
Q 008170 460 LDLYDS 465 (575)
Q Consensus 460 ~~~~~~ 465 (575)
+.+|+.
T Consensus 465 ~~le~~ 470 (484)
T PRK07486 465 HAYEQA 470 (484)
T ss_pred HHHHhc
Confidence 999885
No 11
>PRK07042 amidase; Provisional
Probab=100.00 E-value=6.7e-88 Score=715.03 Aligned_cols=414 Identities=18% Similarity=0.158 Sum_probs=331.7
Q ss_pred HHHHhh-----chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCC
Q 008170 21 IGVSVV-----GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKG 88 (575)
Q Consensus 21 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G 88 (575)
++.+|+ +.+|++|+++.+++||++.|+.+|||++.++++++++|+ .+..+||||||||+|||||+|+|
T Consensus 8 ~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G 87 (464)
T PRK07042 8 SAVELLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGEPLGPLDGVPVTIKENIATRG 87 (464)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCCEEEEEcccccCC
Confidence 555555 448999999999999999999999999998877666553 34567999999999999999999
Q ss_pred ccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHh
Q 008170 89 YVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAA 168 (575)
Q Consensus 89 ~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAa 168 (575)
++||+||+.+.+ .++.+||++|+||++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+
T Consensus 88 ~~tt~Gs~~~~~--~~~~~dA~vV~~Lr~aGAiilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAa 165 (464)
T PRK07042 88 VPVPLGTAATDL--PPAAADAPPAARLREAGAVILAKTTMPDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAGAAAAA 165 (464)
T ss_pred cccCCCChhhcC--CCCCcchHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCChHHHHHHHHc
Confidence 999999999864 577899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc------
Q 008170 169 QLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP------ 242 (575)
Q Consensus 169 g~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~------ 242 (575)
|++++|||||||||||+|||||||||||||+||||+.|.. +.|++|||||+++|++.+++++.+.+..+.
T Consensus 166 G~~~~alGtDtgGSIRiPAa~cGvvG~KPT~Grv~~~g~~----~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~~~~~~ 241 (464)
T PRK07042 166 GYGPLHLGTDIGGSVRLPAGWCGIVGLKPSLGRIPIDPPY----TGRCAGPMTRTVDDAALLMSVLSRPDARDGTSLPPQ 241 (464)
T ss_pred CCCceeeecCCCCccccchHhhCceeecCCCCccCCCCCc----cccccCCccCCHHHHHHHHHHhcCCCCCCccccCCC
Confidence 9999999999999999999999999999999999998843 358999999999999999999876543221
Q ss_pred ----------ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcch-HHhhhccCCCCCc
Q 008170 243 ----------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSL-KGLRAQSTSPENG 311 (575)
Q Consensus 243 ----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l-~~~~~~~~~~~~~ 311 (575)
..+.|+.+..+... ....++++.++++++++.|+..+. .+++..+.+ ..+
T Consensus 242 ~~~~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~---------- 302 (464)
T PRK07042 242 DIDWSDLDIDVRGLRIGLMLDAGC-GLAVDPEVRAAVEAAARRFEAAGA--------IVEPVPPFLTRAM---------- 302 (464)
T ss_pred CcChhhhccCcCCCEEEEECcccC-CCCCCHHHHHHHHHHHHHHHHCCC--------EEEEeCCchhHHH----------
Confidence 12245655544321 112467899999999999864332 111111111 111
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEec
Q 008170 312 TATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIP 391 (575)
Q Consensus 312 ~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~P 391 (575)
.+.+..+...+....+..+.+.....+.+.++.++..+..++..+|.+++..|..+++.+.++|+++|+||+|
T Consensus 303 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~D~ll~P 375 (464)
T PRK07042 303 -------LDGLDRFWRARLWSDLAALPPERRAKVLPYIRRWAEGGADLSGVEAVRGFNQTFAMRAAAARLFAEFDYVLSP 375 (464)
T ss_pred -------HHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcC
Confidence 0000111111222233334444456688999999988888999999999999999999999999999999999
Q ss_pred CCCCCCCcCCccccc-chhhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHhHHHHHHHHh
Q 008170 392 TVSDPPLKLNTKKTY-SAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDSL 466 (575)
Q Consensus 392 t~~~~ap~~~~~~~~-~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~~a~~~~~~~ 466 (575)
|+|.+||+++..... ........+.||.+||++|+|++|||+|+. +|||+||||+|++++|..||++++.+|+..
T Consensus 376 t~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~lL~~a~~le~~~ 452 (464)
T PRK07042 376 VAPVPAFPAEWASPTNDPARPFEHIAFTVPWNMSEQPAASINCGFTRDGLPIGLQIVGPRFDDLGVLRLAKAFEGWR 452 (464)
T ss_pred CCCCCCCCcccccccccchhhhcccccccceeccCCCeEEeecCcCCCCCCeEEEEecCCCcHHHHHHHHHHHHHhc
Confidence 999999988642211 111111223589999999999999999987 899999999999999999999999998854
No 12
>PRK06170 amidase; Provisional
Probab=100.00 E-value=1e-87 Score=719.08 Aligned_cols=422 Identities=22% Similarity=0.270 Sum_probs=333.6
Q ss_pred hhHHHHHHHhhch-----hHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCC------CCCCCCCCCceEEeeccc
Q 008170 16 KVWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPP------PAARQPLAGLKFAIKDVF 84 (575)
Q Consensus 16 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~------~~~~gpL~Gvpi~vKD~~ 84 (575)
+++..++.+|+++ +|++|+++.+++||+++|+.+|||++.++++++++|+. ....||||||||+|||+|
T Consensus 8 ~~~~~s~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~gpL~GvPv~VKD~~ 87 (490)
T PRK06170 8 EWSFLPATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARARGERGPLLGIPVTVKESF 87 (490)
T ss_pred hhhhcCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEECCHHHHHHHHHHHHHHHhcCCCCCcCCceEEEeccc
Confidence 4555577777755 89999999999999999999999999988777665531 124689999999999999
Q ss_pred ccCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHH
Q 008170 85 DVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAV 164 (575)
Q Consensus 85 ~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaa 164 (575)
+|+|++||+||+.|.+ .++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+||||||||||
T Consensus 88 ~v~G~~tt~Gs~~~~~--~~~~~da~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAa 165 (490)
T PRK06170 88 NVAGLPTTWGFPDLRD--YVPAEDAVAVARLKAAGAVILGKTNVPLGLQDWQSYNEIYGTTNNPWDLARTPGGSSGGSAA 165 (490)
T ss_pred ccCCcccCCCChhhcC--CCCCccHHHHHHHHHCCCEEEEecCChhhccCCCccCCCCCCCCCCCCCCCCCCCChHHHHH
Confidence 9999999999999975 57889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCC-----C--CCCCccccccccCHHHHHHHHHHHccC
Q 008170 165 AVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLP-----N--SQSLDTVGLLARNASILHRVGHVLLQL 237 (575)
Q Consensus 165 aVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p-----~--~~~~d~~G~~ar~~~d~~~v~~~~~~~ 237 (575)
|||+|++++|||||||||||+|||||||||||||+||||+.|++| + +.++|++|||+||++|++.+++++.+.
T Consensus 166 AVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~Grv~~~G~~~~~~~~~~~~~~~d~~Gp~arsv~D~a~~l~~l~g~ 245 (490)
T PRK06170 166 ALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVAGPMARSARDLALLLDVMAGP 245 (490)
T ss_pred HHHcCCCceeeecCCCCccccChHHhCceeecCCCCcCcCCCcCCccccccccccccccccCccCCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999988 4 346999999999999999999998875
Q ss_pred CCCCc---------------ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhcc---CcchH
Q 008170 238 NAVEP---------------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASN---VPSLK 299 (575)
Q Consensus 238 ~~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~---~p~l~ 299 (575)
+..+. .++.|+.+..+.+ ....++++.++++++++.|+..+. .+++. .|.+.
T Consensus 246 d~~d~~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~ 315 (490)
T PRK06170 246 DPLDGGVAYRLALPPARHGRLKDFRVLVLDEHP--LLPTDAAVRAAIERLAAALADAGA--------RVVRHSPLLPDLA 315 (490)
T ss_pred CccccccccccCCCcccccccCCCEEEEECCcC--CCCCCHHHHHHHHHHHHHHHHCCC--------EEEEcCCCCCchH
Confidence 43220 0224566554432 123467899999999999864332 11111 12222
Q ss_pred HhhhccCCCCCchhHHHHHHHHHHHHHhhhhhhhH-----HHHHHH--cCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008170 300 GLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIY-----EEWVKS--AKPRLGYNVFERVLEAINTTQDNIKILYKVRN 372 (575)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~-----~~~~~~--~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~ 372 (575)
... ..+..+...+....+ ...... ....+.+.++.++..+..++..+|.++++.|+
T Consensus 316 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~ 378 (490)
T PRK06170 316 ESA-----------------RLYMRLLFAASAARFPPDAYADAQARAAGLSADDRSLAAERLRGAVLSHRDWLFADAARE 378 (490)
T ss_pred HHH-----------------HHHHHHHHHHHhhccchhHHHHhhhccccccchhHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 110 001111110110000 110000 12235566777777777889999999999999
Q ss_pred HHHHHHHHHhCCCCEEEecCCCCCCCcCCccccc------c----hhhHhhhhccccccccCCCCccccccccc-CCCCc
Q 008170 373 EMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTY------S----AEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPI 441 (575)
Q Consensus 373 ~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~------~----~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPv 441 (575)
.+++.+.++|+++|+||+||+|.+||+++..... . ..+. ..+.||.++|++|+|++|||+|+. +|||+
T Consensus 379 ~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~~~Nl~G~PaisvP~g~~~~GlPv 457 (490)
T PRK06170 379 ELRAAWRRFFAEFDVVLCPVTPTPAFPHDHAPDPLERRIDIDGVSYPYW-DQLVWAGLATLPGLPATAIPIGLSATGLPV 457 (490)
T ss_pred HHHHHHHHHHhcCCEEEeCCCCCCCCCCCccccccccccccCCcccchh-hhhhhcceecccCCCeEEEECCcCCCCCce
Confidence 9999999999999999999999999998743110 0 0111 223589999999999999999997 89999
Q ss_pred ccccccccCCchhHHhHHHHHHHHhh
Q 008170 442 SISFITYHGGDKFLLDTVLDLYDSLQ 467 (575)
Q Consensus 442 Glqivg~~~~d~~ll~~a~~~~~~~~ 467 (575)
||||+|++|+|..||++++.+|+.+.
T Consensus 458 GlQlig~~~~D~~LL~~a~~lE~~~~ 483 (490)
T PRK06170 458 GVQIVGPALEDRTPLRLAELLEEEFG 483 (490)
T ss_pred eEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998643
No 13
>PRK12470 amidase; Provisional
Probab=100.00 E-value=8.4e-88 Score=712.32 Aligned_cols=419 Identities=20% Similarity=0.221 Sum_probs=330.5
Q ss_pred hHHHHHHHhhch-----hHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeeccc
Q 008170 17 VWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVF 84 (575)
Q Consensus 17 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~ 84 (575)
++..++++|+.+ +|++|+++.+++||++.|+.+|||++.++++++++|+ .+... |||||||+|||||
T Consensus 6 ~~~~s~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~g~~~-pL~GvPi~vKD~~ 84 (462)
T PRK12470 6 LAFAGAAAQARMLADGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGERL-PLLGVPIAIKDDV 84 (462)
T ss_pred hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEeCHHHHHHHHHHhHHHHhcCCCC-CcCCCeEEEecCc
Confidence 444577777755 8999999999999999999999999998877665553 23344 9999999999999
Q ss_pred ccCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHH
Q 008170 85 DVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAV 164 (575)
Q Consensus 85 ~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaa 164 (575)
+++|++||+||+.+ . .++.+||++|+||++||||++||||||||+++.+|+|++||+|+||||++|+||||||||||
T Consensus 85 ~v~G~~tt~Gs~~~-~--~~~~~dA~vV~rLr~aGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAa 161 (462)
T PRK12470 85 DVAGEVTTYGSAGH-G--PAATSDAEVVRRLRAAGAVIIGKTNVPELMIMPFTESLAFGATRNPWDPNRTPGGSSGGSAA 161 (462)
T ss_pred ccCCceeCCCCccc-C--CCCCccHHHHHHHHHCCCeEEEEeChHhHhcCCCCCCCCCCCCCCCCCCCCCCCcchhHHHH
Confidence 99999999999975 2 57789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCC---
Q 008170 165 AVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE--- 241 (575)
Q Consensus 165 aVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~--- 241 (575)
|||+|++++|||||||||||||||||||||||||+||||+.|++|+++++|++|||+|+|+|++.+++++.+.+..+
T Consensus 162 AVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~ld~~Gp~ar~v~D~a~~~~vl~~~~~~~~~~ 241 (462)
T PRK12470 162 AVAAGLAPVALGSDGGGSIRIPSTWCGLFGLKPQRDRISLEPHDGAWQGLSVNGPIARSVMDAALLLDATTTVPGPEGEF 241 (462)
T ss_pred HHHcCCCceEEecCCCCchhhchhhhCceeecCCCCCcCCCCCCCcccCccccCCeeCCHHHHHHHHHHhcCCCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887543221
Q ss_pred ------cccCceEEeccchhh-hcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhH
Q 008170 242 ------PRRARRLIFADDIFQ-LSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTAT 314 (575)
Q Consensus 242 ------~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~ 314 (575)
...+.|+.+..+.+. .....++++.+.++++++.|+..+. .+++..|.+....
T Consensus 242 ~~~~~~~~~~lrig~~~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~------------ 301 (462)
T PRK12470 242 VAAAAREPGRLRIALSTRVPTPLPVRCGKQELAAVHQAGALLRDLGH--------DVVVRDPDYPAAT------------ 301 (462)
T ss_pred hhhhccCCCCCEEEEECCccccCCCCCCHHHHHHHHHHHHHHHhCCC--------EEEEeCCCchhHH------------
Confidence 112345666544321 1122467899999999999874332 1111112111000
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCC
Q 008170 315 LKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVS 394 (575)
Q Consensus 315 ~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~ 394 (575)
...+...+ .. .+ ... .........+++.++.++..+..++..+|.....++.++++.|+++|+++|+||+||+|
T Consensus 302 ~~~~~~~~--~~--~~-~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~p 375 (462)
T PRK12470 302 YANYLPRF--FR--GI-SDD-ADAQAHPDRLEARTRAIARLGSFFSDRRMAALRAAEVVLSARIQSIFDDVDVVVTPGTA 375 (462)
T ss_pred HHHHHHHH--HH--HH-HHh-hccccChhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCCC
Confidence 00000000 00 00 000 01112334578899999999988888888744455558999999999999999999999
Q ss_pred CCCCcCCccccc--chhh--HhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHhHHHHHHHH
Q 008170 395 DPPLKLNTKKTY--SAEF--HDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDS 465 (575)
Q Consensus 395 ~~ap~~~~~~~~--~~~~--~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~~a~~~~~~ 465 (575)
++||+++..... ...+ ...+..||.++|++|+|+||||+|.. +|||+||||+|++++|..||+++.++|+.
T Consensus 376 ~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlqlvg~~~~D~~LL~~A~~le~~ 451 (462)
T PRK12470 376 TGPSRIGAYQRRGAVSTLLLVVQRVPYFQVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATLLALAAQIESA 451 (462)
T ss_pred CCCCCCCccCCCcchhhhhhhhhccCcCccchhcCCCeEEEecCcCCCCCceEEEEECCCCcHHHHHHHHHHHHcc
Confidence 999998743211 1111 12334589999999999999999987 89999999999999999999999999875
No 14
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.
Probab=100.00 E-value=1e-87 Score=714.37 Aligned_cols=416 Identities=27% Similarity=0.359 Sum_probs=325.3
Q ss_pred chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCCCC--CCCCCCCceEEeecccccCCccccCCChhhhccCCC
Q 008170 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPA--ARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHE 104 (575)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~~~--~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~~~~ 104 (575)
+.+|++|+++.+++||+++|+.+|||++.++++++++|++.. ..||||||||+|||+|+|+|++||+||+.|.+ .+
T Consensus 8 g~~s~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~~--~~ 85 (460)
T TIGR00132 8 KEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKKLDKAILTPLAGIPIAVKDNISTKGIVTTCASKILEN--YI 85 (460)
T ss_pred CCCCHHHHHHHHHHHHHHhcccCCeEEEcCHHHHHHHHHHHHHhccCCcCCcEEEEecccccCCcccCcCChhhcc--CC
Confidence 558999999999999999999999999998876666554221 12899999999999999999999999999975 57
Q ss_pred CCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCccc
Q 008170 105 AERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVR 184 (575)
Q Consensus 105 ~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiR 184 (575)
+.+||++|+||++||||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+|++|+|||||||||||
T Consensus 86 ~~~dA~vV~~L~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSIR 165 (460)
T TIGR00132 86 PPYDATVIERLKQAGALIIGKTNMDEFAMGSSTETSAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGSIR 165 (460)
T ss_pred CCCchHHHHHHHHCCCEEEEEechhHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCCeEeecCCCCcch
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc-----------------ccCce
Q 008170 185 VPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-----------------RRARR 247 (575)
Q Consensus 185 iPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-----------------~~~~~ 247 (575)
+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..+. ..+.+
T Consensus 166 iPAa~cGv~G~KPT~G~vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~~~~d~~~~~~~~~~~~~~~~~~~~~lr 245 (460)
T TIGR00132 166 QPASFCGVVGFKPTYGRVSRYGLVAYASSLDQIGPFARTVEDIALLLDVISGHDKRDSTSAKVPDPEFFEELKKDLKGLK 245 (460)
T ss_pred hhhHhcCceeECCCCCcCCCCCCcCcccCCCcccCeeCCHHHHHHHHHHHcCCCCCCCcccCCCccchhhhhhcccCCCE
Confidence 9999999999999999999999999999999999999999999999999886543221 12235
Q ss_pred EEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhHHHHHHHHHHHHHh
Q 008170 248 LIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQR 327 (575)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 327 (575)
+.+..+.+. ..++++.++++++++.|+..+. +.++...|.+......+ ......+....+..
T Consensus 246 ig~~~~~~~---~~~~~v~~a~~~a~~~L~~~G~-------~v~~~~~p~~~~~~~~~--------~~~~~~e~~~~~~~ 307 (460)
T TIGR00132 246 VGVVKEFSE---EMDKEVQEKFENALEVLEELGA-------EIVEVSFPHVKYALPIY--------YIISPSEASSNLAR 307 (460)
T ss_pred EEEECcccc---cCCHHHHHHHHHHHHHHHHCCC-------EEEEeCCCcHHHHHHHH--------HHHHHHHHHHHHhc
Confidence 555544321 2457888999999998864332 01111223322111100 00000011110111
Q ss_pred h---------hhhhhHHHHHHH-cCCCCCHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHhCCCCEEEecC
Q 008170 328 Y---------EFKTIYEEWVKS-AKPRLGYNVFERVLEAINTT-----QDNIKILYKVRNEMRAALQRLLKDDKILVIPT 392 (575)
Q Consensus 328 ~---------e~~~~~~~~~~~-~~~~l~~~~~~~l~~~~~~s-----~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt 392 (575)
+ .....+.+++.. ....+++.++.++..+...+ ..+|.++++.|.++++.+.++|+++|+||+||
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt 387 (460)
T TIGR00132 308 YDGIRYGYRIEEPNSLKELYAKTRAEGFGEEVKRRIMLGNYALSAGYYDKYYLKAQKVRTLIIDDFLKLFEEVDVIVSPT 387 (460)
T ss_pred cccccccccccccccHHHHHhhcchhhcCHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCC
Confidence 1 001112333332 23447788888876654433 34488899999999999999999999999999
Q ss_pred CCCCCCcCCccccc-chhhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHhHHHHHHH
Q 008170 393 VSDPPLKLNTKKTY-SAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYD 464 (575)
Q Consensus 393 ~~~~ap~~~~~~~~-~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~~a~~~~~ 464 (575)
+|.+||++++.... ...+. . ..||.++|++|+|++|||+|+. +|+|+||||+|++|+|..||++++.+|+
T Consensus 388 ~~~~a~~~~~~~~~~~~~~~-~-~~~t~~~nl~g~PaisvP~g~~~~GlPvGlqlig~~~~D~~lL~~A~~le~ 459 (460)
T TIGR00132 388 APTLPFKIGEKLDDPLEMYL-S-DILTVPANLAGLPAISVPCGVKEKGLPIGLQIIGKCFDDKTLLQVSYAFEQ 459 (460)
T ss_pred CCCCCCCcccccCchHhhhc-c-cceeccccccCCCcEEEecCcCCCCCCeeEEEECCCCchHHHHHHHHHHhh
Confidence 99999999753221 11111 1 1379999999999999999998 8999999999999999999999999875
No 15
>PRK08310 amidase; Provisional
Probab=100.00 E-value=1.3e-86 Score=690.20 Aligned_cols=390 Identities=40% Similarity=0.632 Sum_probs=320.2
Q ss_pred CCCcCcEEeeccCCCCCCCCCCCCCCCCCCceEEeecccccCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEee
Q 008170 46 RVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGK 125 (575)
Q Consensus 46 ~~~~~a~~~~~~~~~~~~a~~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GK 125 (575)
++.+|||+...+.- ..++..||||||||+|||+|+++|++||+||+.|.....++.+||++|+|||+||||++||
T Consensus 4 ~~~~~a~~~~~~~~-----~~~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~~~dA~vV~~L~~aGAii~GK 78 (395)
T PRK08310 4 HDPFNAFIAKPDKP-----LPHAASGPLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVGK 78 (395)
T ss_pred CCccccccccCCCC-----CCCCCCCCcCCCeEEEeeccccCCCccCCCCHHHHhcCCCCCCCHHHHHHHHHCCCEEEEe
Confidence 46799999986431 1245679999999999999999999999999998643457789999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCccccccccccceeeeCCCCCccCC
Q 008170 126 TVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMI 205 (575)
Q Consensus 126 tn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~ 205 (575)
||||||+++.+|+|++||.|+||||++|+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.
T Consensus 79 Tn~~E~~~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~aiGtDtGGSIRiPAa~cGv~G~KPT~Grvs~~ 158 (395)
T PRK08310 79 TQTDELAFSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLE 158 (395)
T ss_pred ccchHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHcCCcceEEecCCCCCeecchHhcCeeEeecCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCcccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccc
Q 008170 206 GVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHM 285 (575)
Q Consensus 206 G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~ 285 (575)
|+.|+++++|++|||+||++|++.+++++.+.+..+...+.++.+..+.+ ...++++.++++++++.|+...
T Consensus 159 G~~~~~~~~d~~Gp~arsv~D~~~~~~~l~g~~~~~~~~~~ri~~~~~~~---~~~~~~v~~a~~~a~~~L~~~~----- 230 (395)
T PRK08310 159 GVMPLAPSFDTVGWFARDIALLERVGEVLLGDDAQEFPLTQRLLIPVDLF---ALLDPAVRAALEAALARLRPHL----- 230 (395)
T ss_pred CCcccccCCCeeeeeeCCHHHHHHHHHHHcCCCcccCCcCceEEEecccc---ccCCHHHHHHHHHHHHHHHHhC-----
Confidence 99999999999999999999999999999875543333345666655433 2246788899999999885321
Q ss_pred cccchhhccCcchHHhhhccCCCCCchhHHHHHHHHHHHHHhhhhhhhHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHH
Q 008170 286 NVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIK 365 (575)
Q Consensus 286 ~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~s~~~~~ 365 (575)
++.++...+.. .+..+...+..+...+.+..+..+.+.....+++.++.+++.+..++..+|.
T Consensus 231 --g~vv~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 293 (395)
T PRK08310 231 --GPAKPASVPPL---------------SLDEWYEAFRVLQAAEAWETHGAWISSGNPQLGPGVADRFAAGAEVTADQVE 293 (395)
T ss_pred --CceeeecCCcc---------------cHHHHHHHHHHHHHHHHHHHHHHHHHhchhhcCHHHHHHHHhhccCCHHHHH
Confidence 11111111110 0111111222233334455566666666677899999999989889999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCcccccccccCCCCccccc
Q 008170 366 ILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISF 445 (575)
Q Consensus 366 ~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqi 445 (575)
++.+.|+.+++.+.++|+++|+||+||++.+||+++........+...++.||.++|++|+|+++||+|..+|||+||||
T Consensus 294 ~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisvP~g~~~glPvglQi 373 (395)
T PRK08310 294 AARARRAAFARELAALLGPDAVLLLPTVPGAAPLRGAPFEALEAYRERALRLLCIAGLAGLPQISLPLASVDGAPFGLSL 373 (395)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCccCCCccchHHHHHHHHHhhceeehhcCCCeEEEECCCCCCCCEEEEE
Confidence 99999999999999999999999999999999998754322222223344689999999999999999988999999999
Q ss_pred ccccCCchhHHhHHHHHHHH
Q 008170 446 ITYHGGDKFLLDTVLDLYDS 465 (575)
Q Consensus 446 vg~~~~d~~ll~~a~~~~~~ 465 (575)
+|++++|..||++++++|+.
T Consensus 374 vg~~~~D~~lL~~a~~le~~ 393 (395)
T PRK08310 374 IGPRGSDRSLLALAQTIAAA 393 (395)
T ss_pred ECCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999874
No 16
>PRK07488 indole acetimide hydrolase; Validated
Probab=100.00 E-value=4.7e-87 Score=710.01 Aligned_cols=421 Identities=26% Similarity=0.322 Sum_probs=332.4
Q ss_pred hhHHHHHHHhhch-----hHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecc
Q 008170 16 KVWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDV 83 (575)
Q Consensus 16 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~ 83 (575)
+++..++++|+.+ +|++|+++.+++||++++ .+|||++.++++++++|+ .+...| ||||||+|||+
T Consensus 7 ~~~~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~-~lna~~~~~~~~al~~A~~~d~~~~~g~~~g-L~GvPi~vKD~ 84 (472)
T PRK07488 7 DVASLSLTEAAAALRSGRLSCLELVEALLARAAALA-PLNAFTTVDAEGALAAARRIDAQRAAGAALL-LAGVPIVIKDN 84 (472)
T ss_pred hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-cCCEEEEcCHHHHHHHHHHHHHHHhcCCCCC-cCceEEEEEcc
Confidence 4555578887755 899999999999999876 699999998877665553 233445 99999999999
Q ss_pred cccCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHH
Q 008170 84 FDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSA 163 (575)
Q Consensus 84 ~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsa 163 (575)
|+|+|++||+||+.|.+ .++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++++|||||||||
T Consensus 85 ~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsA 162 (472)
T PRK07488 85 INTAGMPTTAGTPALLG--FVPATDAPVVQRLLDAGAVPLGKANMHELAFGITSNNGAFGAVRNPYDPARIAGGSSGGTA 162 (472)
T ss_pred cccCCCccCcCChhhcc--CCCCCCHHHHHHHHHCCCeeeeccChhHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchHHH
Confidence 99999999999999875 5678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc-
Q 008170 164 VAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP- 242 (575)
Q Consensus 164 aaVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~- 242 (575)
||||+|++++|||||||||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..+.
T Consensus 163 aaVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~G~~p~~~~~d~~Gp~arsv~D~a~~~~vl~g~d~~~~~ 242 (472)
T PRK07488 163 AAVAARLAPAGLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIARSVADLALLDAVITGDAALPAP 242 (472)
T ss_pred HHHHcCCCceeeecCCCCCeecChHhhCceeeccCCCCCCCCCcccccccCCcccCccCCHHHHHHHHHHhcCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887654321
Q ss_pred --ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhHHHHHHH
Q 008170 243 --RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSS 320 (575)
Q Consensus 243 --~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~ 320 (575)
..+.++.+..+.+ ....++++.++++++++.|+..+. +.++...|.+.++...
T Consensus 243 ~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~-------~v~~~~~~~~~~~~~~---------------- 297 (472)
T PRK07488 243 VALAGLRLGVPAAPF--WDGLDPDVAAVAEAALAKLAAAGV-------TFVELDLPGLHELNEA---------------- 297 (472)
T ss_pred cCcCCCEEEEEcchh--ccCCCHHHHHHHHHHHHHHHHCCC-------EEEeeCCcCHHHHhhh----------------
Confidence 2345666654332 122467889999999998864332 0011122322211000
Q ss_pred HHHHHHhhhhhhhHHHHHHHcC----------CCCCHHHHHHHHHH---hcCCHHHHHHHHHH-HHHHHHHHHHHhC--C
Q 008170 321 VMLSLQRYEFKTIYEEWVKSAK----------PRLGYNVFERVLEA---INTTQDNIKILYKV-RNEMRAALQRLLK--D 384 (575)
Q Consensus 321 ~~~~l~~~e~~~~~~~~~~~~~----------~~l~~~~~~~l~~~---~~~s~~~~~~a~~~-r~~~~~~~~~~~~--~ 384 (575)
....+..+++...+..++.... ...++.++.+++.+ ..++..+|.++++. |+.+++.++++|+ +
T Consensus 298 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~~~~~~~~~~~~~ 377 (472)
T PRK07488 298 VGFPIALYEALADLRAYLRENGAGVSFEELVARIASPDVRAIFRDLLDPPQISEDAYRAALDVGRPRLQAWYRQAFARHG 377 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 0011111233333333332221 12256666655432 35788899999887 9999999999998 7
Q ss_pred CCEEEecCCCCCCCcCCcccc------cchhhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHh
Q 008170 385 DKILVIPTVSDPPLKLNTKKT------YSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLD 457 (575)
Q Consensus 385 ~DvLl~Pt~~~~ap~~~~~~~------~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~ 457 (575)
+|+||+||+|.+||++++... ....+ ..+..+|.++|++|+|+||||+|+. +|||+||||+|++++|..||+
T Consensus 378 ~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlig~~~~d~~LL~ 456 (472)
T PRK07488 378 LDAILFPTTPLTAPPIGDDDTVILNGAAVPTF-ARVIRNTDPASNAGLPGLSLPAGLTPHGLPVGLELDGPAGSDRRLLA 456 (472)
T ss_pred CCEEEeCCCCCCCccccccccccccccchhhh-hhhhcccccccccCCCeEEEecCCCCCCCCeeEEEeCCCCCHHHHHH
Confidence 899999999999999975311 11222 2344579999999999999999997 899999999999999999999
Q ss_pred HHHHHHHHh
Q 008170 458 TVLDLYDSL 466 (575)
Q Consensus 458 ~a~~~~~~~ 466 (575)
++.++|+..
T Consensus 457 ~A~~lE~~~ 465 (472)
T PRK07488 457 IGRALERVL 465 (472)
T ss_pred HHHHHHHhh
Confidence 999999853
No 17
>PRK07235 amidase; Provisional
Probab=100.00 E-value=2e-86 Score=705.34 Aligned_cols=418 Identities=21% Similarity=0.251 Sum_probs=332.5
Q ss_pred chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC------CCCCCCCCCCceEEeecccccCCccccCCChhhhc
Q 008170 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKR 100 (575)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~------~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~ 100 (575)
+.+++.|+++...+++..+++..|++....++++...|. .+...||||||||+|||||+++|++||+||+.+.+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g~~~gpL~GvPiavKD~i~v~G~ptt~Gs~~~~~ 115 (502)
T PRK07235 36 ASLDAYDRIDELPDEIPPVKYPRTPGYRPEAEENPYGAWYVKTSIKGAAEGKLAGKTVALKDNVAVAGVPMMNGSSTLEG 115 (502)
T ss_pred hccCHHHHHHHHhhcccccCCCcccccccCcccChhcChhhhhccCCCCCCCcCCceEEEecccccCCcccCccChhhcC
Confidence 669999999999999999999999999887776654442 45667999999999999999999999999999974
Q ss_pred cCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCC
Q 008170 101 DHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180 (575)
Q Consensus 101 ~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtg 180 (575)
.++.+||++|+||++|||||+||||||||+++.+++|++||+|+||||++|+|||||||||||||+|++++|||||||
T Consensus 116 --~~p~~DA~vV~rL~~AGAii~GKTn~~Ef~~~~~t~n~~~G~t~NP~~~~~~~GGSSgGsAAaVAaG~v~~aiGtDtG 193 (502)
T PRK07235 116 --FVPSFDATVVTRLLDAGATIVGKATCEDLCFSGGSHTSDPGPVHNPRDPGYSAGGSSSGSAALVAAGEVDMAIGGDQG 193 (502)
T ss_pred --CCCCCCHHHHHHHHHCCCEEEEEecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCCeEEecCCC
Confidence 678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCcc-----------------
Q 008170 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPR----------------- 243 (575)
Q Consensus 181 GSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~~----------------- 243 (575)
||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++.
T Consensus 194 GSIRiPAa~cGvvGlKPT~G~vp~~G~~~~~~sld~~Gpmarsv~D~a~ll~viag~d~~d~~~~~~~~~~~~~~~l~~~ 273 (502)
T PRK07235 194 GSIRIPSAWCGIYGMKPTHGLVPYTGAFPIERTIDHLGPMTATVRDNALLLEVIAGRDGLDPRQPAQPPVDDYTAALDRG 273 (502)
T ss_pred CCcCccHHHcCcceecCCCcccCCCCCCCcccccCeeeceeCCHHHHHHHHHHHcCCCCCCccccccCCccchhHHhccC
Confidence 999999999999999999999999999999999999999999999999999999875433211
Q ss_pred -cCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhh-ccCcchHHhhhccCCCCCchhHHHHH-HH
Q 008170 244 -RARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSLKGLRAQSTSPENGTATLKAL-SS 320 (575)
Q Consensus 244 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~-~~~p~l~~~~~~~~~~~~~~~~~~~~-~~ 320 (575)
.+.|+.+..+.+.. ...++++.++++++++.|+..++ .|+ ..+|........ +..+ .+
T Consensus 274 ~~~lrIgv~~~~~~~-~~~~~~v~~a~~~a~~~L~~~G~--------~V~~v~~p~~~~~~~~----------~~~~~~~ 334 (502)
T PRK07235 274 VKGLKIGILREGFGL-PNSEPEVDEAVRAAAKRLEDLGA--------TVEEVSIPLHRLALAI----------WNPIATE 334 (502)
T ss_pred CcCCEEEEeccccCC-CCCCHHHHHHHHHHHHHHHHCCC--------EEEEeCCCchhhHHHH----------HHHHHHH
Confidence 12345554443211 12367899999999999874432 111 122221110000 0000 00
Q ss_pred HHH--HHHh------------hhhhhhHHHHHHHcCCCCCHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHHHh
Q 008170 321 VML--SLQR------------YEFKTIYEEWVKSAKPRLGYNVFERVLEAI----NTTQDNIKILYKVRNEMRAALQRLL 382 (575)
Q Consensus 321 ~~~--~l~~------------~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~----~~s~~~~~~a~~~r~~~~~~~~~~~ 382 (575)
... .+.. .++...+..+.......+++.++.++..+. .++..+|.++++.|+++++.++++|
T Consensus 335 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~y~~a~~~r~~~~~~~~~~~ 414 (502)
T PRK07235 335 GATAQMMLGNGYGFNWKGLYDTGLLDAFGAGWRERADDLSETVKLVMLLGQYGLERYHGRYYAKARNLARRLRAAYDEAL 414 (502)
T ss_pred HHHHHhhhccccccccccccchhHHHHHhhhhhcchhhcCHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000 011112222223344568899998887665 3577899999999999999999999
Q ss_pred CCCCEEEecCCCCCCCcCCcccccchhhHh---hhhccccccccCCCCcccccccccCCCCcccccccccCCchhHHhHH
Q 008170 383 KDDKILVIPTVSDPPLKLNTKKTYSAEFHD---RTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTV 459 (575)
Q Consensus 383 ~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~---~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a 459 (575)
+++|+||+||+|.+||+++........+.. .++.||.+||++|+|++|||+|+.+|||+||||+|++|+|..||+++
T Consensus 415 ~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PalsvP~g~~~GlPvGlQlvg~~~~D~~lL~~A 494 (502)
T PRK07235 415 RKYDLLVMPTTPMVATPLPAPDASREEYVSRALEMIANTAPFDVTGHPAMSVPCGLVDGLPVGLMLVGRHFDEATILRAA 494 (502)
T ss_pred hcCCEEeeCCCCCCCCCcccccCchHHHHHHHHhhhccCccchhhCCCeEEEECCcCCCCCeEEEEeCCCCCHHHHHHHH
Confidence 999999999999999999753222222221 23458999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 008170 460 LDLYDS 465 (575)
Q Consensus 460 ~~~~~~ 465 (575)
.++|+.
T Consensus 495 ~~~E~~ 500 (502)
T PRK07235 495 AAFEAS 500 (502)
T ss_pred HHHHhh
Confidence 999874
No 18
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed
Probab=100.00 E-value=2.2e-87 Score=711.54 Aligned_cols=414 Identities=25% Similarity=0.331 Sum_probs=323.9
Q ss_pred chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCCccccCCChhhh
Q 008170 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK 99 (575)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~ 99 (575)
+.+|++|+++.+++||++.|+.+|||++.++++++++|+ .+. .||||||||+|||||+|+|++||+||..|.
T Consensus 4 g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~-~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~ 82 (459)
T PRK00012 4 KEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKLAAGE-AGPLAGIPIAIKDNICTKGIRTTCASKILE 82 (459)
T ss_pred CcCCHHHHHHHHHHHHHHhcccCCeEEEeCHHHHHHHHHHHHHHHhcCC-CCccCCeEEEEecccccCCCccCccCHhhc
Confidence 568999999999999999999999999998877666554 233 789999999999999999999999999987
Q ss_pred ccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCC
Q 008170 100 RDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT 179 (575)
Q Consensus 100 ~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDt 179 (575)
+ .++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+||||||
T Consensus 83 ~--~~~~~da~vV~~Lr~aGAiilGkTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDt 160 (459)
T PRK00012 83 N--YVPPYDATVVEKLKAAGAVILGKTNMDEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDT 160 (459)
T ss_pred c--CCCCcchHHHHHHHHCCCEEEeeccchhhhcCCCCCCCCCCCcCCCCCCCCCCCCCcHHHHHHHHcCCCceEEeeCC
Confidence 5 57889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc-----------------
Q 008170 180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----------------- 242 (575)
Q Consensus 180 gGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----------------- 242 (575)
||||||||+||||||||||+||||+.|++|+++++|++||||||++|++.+++++.+.+..+.
T Consensus 161 gGSiRiPAa~cGvvG~KPT~G~vp~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~~~~ 240 (459)
T PRK00012 161 GGSIRQPAAFCGVVGLKPTYGRVSRYGLIAFASSLDQIGPFARTVEDAALLLNAIAGHDPKDSTSADVPVPDYTAALGKD 240 (459)
T ss_pred CCccchhHHHcCceeecCCCCcccCCCCcCcccCCCcccCccCCHHHHHHHHHHHhCCCCCCcccccCCCCchhhhhccc
Confidence 999999999999999999999999999999999999999999999999999999876442211
Q ss_pred ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchh-hccCcchHHhhhccCCCCCchhHHHHHHHH
Q 008170 243 RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYI-ASNVPSLKGLRAQSTSPENGTATLKALSSV 321 (575)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v-~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~ 321 (575)
..+.++.+..+.+ ....++++.++++++++.|...+. .+ +...|.+......+ ......+.
T Consensus 241 ~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~~~~~--------~~~~~~~~ 302 (459)
T PRK00012 241 IKGLKIGVPKEYF--GEGLDPEVKEAVEAAIKKLEDLGA--------EIVEVSLPHTKYALPAY--------YIIAPAEA 302 (459)
T ss_pred ccccEEEEEcccc--cccCCHHHHHHHHHHHHHHHHCCC--------EEEEeCCCchHHHHHHH--------HHHHHHHH
Confidence 1223565554432 122357889999999998864332 11 11223222110000 00000010
Q ss_pred HHHHHhh---------hhhhhHHHHHHH-cCCCCCHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 008170 322 MLSLQRY---------EFKTIYEEWVKS-AKPRLGYNVFERVLEAINT-----TQDNIKILYKVRNEMRAALQRLLKDDK 386 (575)
Q Consensus 322 ~~~l~~~---------e~~~~~~~~~~~-~~~~l~~~~~~~l~~~~~~-----s~~~~~~a~~~r~~~~~~~~~~~~~~D 386 (575)
...+..+ .....+.+++.. ....+++.++.++..+... ...+|.++++.|.++++.+.++|+++|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D 382 (459)
T PRK00012 303 SSNLARYDGVRYGYRAEDAKDLEEMYEKTRSEGFGEEVKRRIMLGTYVLSAGYYDAYYLKAQKVRTLIKQDFEKAFEKVD 382 (459)
T ss_pred HHHHhhcccccccccccccccHHHHHhhhhhhccCHHHHHHHHhCcchhccccchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0011010 000112223222 2235788888888765443 234588899999999999999999999
Q ss_pred EEEecCCCCCCCcCCccccc-chhhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHhHHHHHH
Q 008170 387 ILVIPTVSDPPLKLNTKKTY-SAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLY 463 (575)
Q Consensus 387 vLl~Pt~~~~ap~~~~~~~~-~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~~a~~~~ 463 (575)
+||+||+|.+||+++..... ...+. ...||.++|++|+|++|||+|+. +|+|+||||+|++++|..||++++++|
T Consensus 383 ~ll~Pt~~~~a~~~~~~~~~~~~~~~--~~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlvg~~~~D~~LL~~a~~~E 459 (459)
T PRK00012 383 VILGPTAPTTAFKIGEKTDDPLAMYL--SDIFTVPANLAGLPAISVPAGFDDGGLPVGLQLIGKYFDEETLLNVAYAFE 459 (459)
T ss_pred EEEeCCCCCCCcccccccCchHhhhc--cccccccccccCCCcEEEecCCCCCCCCEEEEEECCCCchHHHHHHHHHhC
Confidence 99999999999999753211 11121 12379999999999999999988 799999999999999999999998874
No 19
>PRK06061 amidase; Provisional
Probab=100.00 E-value=1.8e-86 Score=705.98 Aligned_cols=408 Identities=21% Similarity=0.241 Sum_probs=325.0
Q ss_pred chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCC------CCCCCCCCCceEEeecccccCCccccCCChhhhc
Q 008170 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPP------PAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKR 100 (575)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~------~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~ 100 (575)
+.+|++|+++.+++||++.|+.+|||++.++++++++|++ ....+|||||||+|||||+++|++||+||+.+
T Consensus 30 g~~s~~el~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~pL~GvPv~vKD~~~v~G~~tt~Gs~~~-- 107 (483)
T PRK06061 30 GAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAAGDRLPLLGVPIAVKDDVDVAGVPTAFGTAGE-- 107 (483)
T ss_pred CCCCHHHHHHHHHHHHHHhCCcCCEEEEeChHHHHHHHHHHHHHHhcCCCCCcCCCeEEEEcccccCCceecCCCccc--
Confidence 4499999999999999999999999999988877665541 11235999999999999999999999999843
Q ss_pred cCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCC
Q 008170 101 DHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180 (575)
Q Consensus 101 ~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtg 180 (575)
..++.+||++|+||++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++++|||||||
T Consensus 108 -~~~a~~dA~vV~~Lr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaAVAaG~~~~alGtDtg 186 (483)
T PRK06061 108 -VPPATADSEVVRRLRAAGAVIVGKTNTCELGQWPFTSGPAFGHTRNPWSRDHTPGGSSGGSAAAVAAGLVTAAIGSDGA 186 (483)
T ss_pred -CCCCCCCHHHHHHHHHCCCEEEEecCcchhccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHcCCCceEeecCCC
Confidence 2345799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc---------------ccC
Q 008170 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP---------------RRA 245 (575)
Q Consensus 181 GSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~---------------~~~ 245 (575)
|||||||+||||||||||+||||+.|+.|.++++|++|||+||++|++.+++++.+.+..+. ..+
T Consensus 187 GSIRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~~~~~ 266 (483)
T PRK06061 187 GSVRIPAAWTHLVGIKPQRGRISTWPLPEAFNGLTVNGPLARTVADAALLLDAASGNHPGDRHRPPPVTVSDAVGRAPGP 266 (483)
T ss_pred CcchhchhhcCceeecCCCCccCCCCCCcccccCceeCCEeCCHHHHHHHHHHHhCCCCCCCcccCCccchhhhccCCCC
Confidence 99999999999999999999999999999889999999999999999999999876532211 122
Q ss_pred ceEEeccchhh--hcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhHHHHHHHHHH
Q 008170 246 RRLIFADDIFQ--LSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVML 323 (575)
Q Consensus 246 ~~l~~~~~~~~--~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (575)
.|+.+..+... .....++++.+.++++++.|+..+. .++...|.+.... ....+..
T Consensus 267 lrig~~~~~~~~~~~~~~~p~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~-----------~~~~~~~--- 324 (483)
T PRK06061 267 LRIALSTRFPFTGFPAKLHPEIRAAVRRVAEQLALLGH--------TVVPADPDYGLRL-----------GLNFLPR--- 324 (483)
T ss_pred cEEEEECCccccccccCCCHHHHHHHHHHHHHHHHCCC--------EEEEeCCchhhHH-----------HHHHHHH---
Confidence 34555433210 1122467899999999999864332 1111112111000 0000000
Q ss_pred HHHhhhhhhhHHHHHHH--cCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCC
Q 008170 324 SLQRYEFKTIYEEWVKS--AKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLN 401 (575)
Q Consensus 324 ~l~~~e~~~~~~~~~~~--~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~ 401 (575)
....+..+.+. ....+++.++.+++.+..++..+|.++++.|+.+++.+.++|+++|+||+||+|.+||+++
T Consensus 325 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~p~~ap~~~ 398 (483)
T PRK06061 325 ------STAGLRDWAERLGDPVLLDPRTVSNARMGRLLSQAILRLARAAEAAAQRRVGSIFDIVDVVLAPTTAQPPPRVG 398 (483)
T ss_pred ------HHHHHHHHHhhccChhhCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCcc
Confidence 00111122221 2335789999999888889999999999999999999999999999999999999999997
Q ss_pred ccccc--c--hhhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHhHHHHHHHH
Q 008170 402 TKKTY--S--AEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDS 465 (575)
Q Consensus 402 ~~~~~--~--~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~~a~~~~~~ 465 (575)
+.... . ......+..||.++|++|+|++|||+|.. +|||+||||+|++++|..||+++..+|+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~LL~~A~~le~~ 467 (483)
T PRK06061 399 AFDRLGGWATDRAMIAACPYTWPWNVLGWPSINVPAGFTSDGLPIGAQLMGPANSEPLLISLAAQLEAV 467 (483)
T ss_pred cccccccchhhhhhhhcccccccccccCCCeEEEecCcCCCCCCeeeEEECCCCCHHHHHHHHHHHHhh
Confidence 53211 0 00011233589999999999999999987 89999999999999999999999999985
No 20
>PRK06529 amidase; Provisional
Probab=100.00 E-value=2.7e-86 Score=705.96 Aligned_cols=411 Identities=18% Similarity=0.242 Sum_probs=323.9
Q ss_pred chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCCCC-CCCCCCCceEEeecc-cccCCccccCCChhhhccCCC
Q 008170 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPA-ARQPLAGLKFAIKDV-FDVKGYVTGFGSPDWKRDHHE 104 (575)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~~~-~~gpL~Gvpi~vKD~-~~~~G~~tt~Gs~~~~~~~~~ 104 (575)
+.+|++|+++.+++||++.|+.+|||++..+++++++|++.. ..+|||||||+|||| |+|+|++||+||+.+.+ .+
T Consensus 16 g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~PL~GvPi~vKD~~~~v~G~~tt~Gs~~~~~--~~ 93 (482)
T PRK06529 16 GQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQRDFSGKPFAGVPIFLKDLGQELKGQLSTSGSRLFKN--YQ 93 (482)
T ss_pred CCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHhccccCCCcCCCeEEEecCCcccCCCccCcchHHhcC--CC
Confidence 449999999999999999999999999998877666654322 225999999999998 79999999999999875 57
Q ss_pred CCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCccc
Q 008170 105 AERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVR 184 (575)
Q Consensus 105 ~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiR 184 (575)
+.+||++|+|||+|||||+||||||||+++.+|.|++||+|+||||++|+|||||||||||||+|++++|||||||||||
T Consensus 94 ~~~Da~vV~rLr~AGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~aiGtDtgGSIR 173 (482)
T PRK06529 94 ATKTDLYVKRLEDLGFIILGRSNTPEFGFKNISDSSLHGPVNLPFDNSRNAGGSSGGAAALVSSGIVALAAASDGGGSIR 173 (482)
T ss_pred CCcchHHHHHHHHCCCeEEEecCchHhhcCCCCCCcCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceeeecCCCCCee
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeeeCCCCCccCCCCCCCCCCCccc-cccccCHHHHHHHHHHHccCCCCCc---------------ccCceE
Q 008170 185 VPASFCGILGYRPSHGTVSMIGVLPNSQSLDTV-GLLARNASILHRVGHVLLQLNAVEP---------------RRARRL 248 (575)
Q Consensus 185 iPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~-G~~ar~~~d~~~v~~~~~~~~~~~~---------------~~~~~l 248 (575)
+|||||||||||||+||||..+..+.+++.|++ |||+|+++|++.+++++.+.+..++ ..+.|+
T Consensus 174 iPAa~cGvvGlKPT~Grvp~~~~~~~~~~~~~~~Gpiarsv~D~a~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lrI 253 (482)
T PRK06529 174 IPASFNGLIGLKPSRGRIPVGPGSYRGWQGASVHFALTKSVRDTRRLLYYLQMYQMESPFPLATLSKESLFQSLQRPLKI 253 (482)
T ss_pred cChHhhCceeEccCCCccCCCCCCccccccccccCCccCcHHHHHHHHHHhhCCCCCCCcccCCcccchhccccCCCCEE
Confidence 999999999999999999987766656677766 7999999999999998876432110 122355
Q ss_pred EeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhcc--Cc-chHHhhhccCCCCCchhHHHHHHHHHHHH
Q 008170 249 IFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASN--VP-SLKGLRAQSTSPENGTATLKALSSVMLSL 325 (575)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~--~p-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 325 (575)
.+..+.+. ....++++.++++++++.|+..+. .+++. .| .+.... ..+..+
T Consensus 254 g~~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G~--------~v~ev~~~p~~~~~~~-----------------~~~~~~ 307 (482)
T PRK06529 254 AFYQRSPD-GSPVSLDAAKALKQAVTFLREQGH--------EVVELEEFPLDMTEVM-----------------RSYYIM 307 (482)
T ss_pred EEECCCCC-CCCCCHHHHHHHHHHHHHHHhCCC--------EEEEcCCCCCCHHHHH-----------------HHHHHH
Confidence 55543221 122467899999999999864332 12111 12 111111 111111
Q ss_pred HhhhhhhhHHHHHHHc-----CCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcC
Q 008170 326 QRYEFKTIYEEWVKSA-----KPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKL 400 (575)
Q Consensus 326 ~~~e~~~~~~~~~~~~-----~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~ 400 (575)
...+....+..+.+.. ...+.+.++.++..+..++..+|.++++.|+.+++.++++|+++|+||+||+|++||++
T Consensus 308 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~a~~~ 387 (482)
T PRK06529 308 NSVETAAMFDDIEDALGRPMTKDDMETMTWAIYQSGQDIPAKRYSQVLQKWDTYSATMASFHETYDLLLTFTTNTPAPKH 387 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCChhhcCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEcCCCCCCCCCC
Confidence 1222222222222111 12356666667777878899999999999999999999999999999999999999998
Q ss_pred Ccccccc----------------------hhh--HhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhH
Q 008170 401 NTKKTYS----------------------AEF--HDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFL 455 (575)
Q Consensus 401 ~~~~~~~----------------------~~~--~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~l 455 (575)
++..... ..+ ...++.||.++|++|+|++|||+|.. +|||+||||+|++++|..|
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~l 467 (482)
T PRK06529 388 GQLDPDSKLMANLAQAEIFSSEEQQNLVETMFEKSLAITPYTALANLTGQPAISLPTYETKEGLPMGVQLIAAKGREDLL 467 (482)
T ss_pred CccCcccchhhhccccccccchhhhhhhhhhhhhhhhcccccccccccCCCeEEeecCcCCCCCceeEEEecCCCcHHHH
Confidence 7522110 011 01234589999999999999999987 8999999999999999999
Q ss_pred HhHHHHHHHH
Q 008170 456 LDTVLDLYDS 465 (575)
Q Consensus 456 l~~a~~~~~~ 465 (575)
|+++..+|+.
T Consensus 468 L~~a~~le~~ 477 (482)
T PRK06529 468 LGIAEQFEAA 477 (482)
T ss_pred HHHHHHHHhc
Confidence 9999999874
No 21
>PRK07869 amidase; Provisional
Probab=100.00 E-value=2.1e-86 Score=704.97 Aligned_cols=422 Identities=18% Similarity=0.245 Sum_probs=321.1
Q ss_pred chhHHHHHHHhhch-----hHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCC-CCCCCCCCCceEEeecccccCC
Q 008170 15 PKVWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPP-PAARQPLAGLKFAIKDVFDVKG 88 (575)
Q Consensus 15 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~-~~~~gpL~Gvpi~vKD~~~~~G 88 (575)
.|++..|+++|+.+ +|++|+++.+++||++.|+.+|||++.++++++++|++ ....||||||||+|||||+++|
T Consensus 10 ~~~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~e~a~~~A~~~d~~~gpL~GvPi~vKD~~~v~G 89 (468)
T PRK07869 10 DALGDLDAVGLAEAIRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAARPGSQGGFFSGVPTFIKDNVDVAG 89 (468)
T ss_pred hhhhcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEEcCHHHHHHHHHhcCCCCCCcCCCeEEEecCcccCC
Confidence 34555577777744 89999999999999999999999999988776665543 2346899999999999999999
Q ss_pred ccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHh
Q 008170 89 YVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAA 168 (575)
Q Consensus 89 ~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAa 168 (575)
++||+||+.|.+ .++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||||||+
T Consensus 90 ~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~pGGSSgGsAaAVAa 167 (468)
T PRK07869 90 LPTMHGSDAWTP--RPAKADSDFARQFLATGLISLGKTQLPEFGFSASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAA 167 (468)
T ss_pred cccCcccHhhcC--CCCCCcHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHc
Confidence 999999999874 577899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCC-CCCCccccccccCHHHHHHHHHHHccCCCCC---c--
Q 008170 169 QLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPN-SQSLDTVGLLARNASILHRVGHVLLQLNAVE---P-- 242 (575)
Q Consensus 169 g~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~-~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~---~-- 242 (575)
|++++|||||||||||||||||||||||||+||||+.|+.|. ..++|++|||+||++|++.+++++.+.+..+ .
T Consensus 168 G~~~~alGTDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~~d~~Gp~arsv~D~a~l~~v~~g~~~~~~~~~~~ 247 (468)
T PRK07869 168 GVVPIAHANDGGGSIRIPAACCGLVGLKPSRGRLPLDPELRRLPVNIVANGVLTRTVRDTAAFYREAERYYRNPKLPPIG 247 (468)
T ss_pred CCCceeeecCCCCccccchhhcCeeeecCCCCcccCCCCcccCccccceecCeeCcHHHHHHHHHHHhccCccCCCCchh
Confidence 999999999999999999999999999999999999998774 3478999999999999999999887543211 0
Q ss_pred ------ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhh-ccCcchHHhhhccCCCCCchhHH
Q 008170 243 ------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSLKGLRAQSTSPENGTATL 315 (575)
Q Consensus 243 ------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~-~~~p~l~~~~~~~~~~~~~~~~~ 315 (575)
..+.|+.+..+.+. ....++++.++++++++.|+..+. .++ ...|....+.. .+
T Consensus 248 ~~~~~~~~~lrigv~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~~~----------~~ 308 (468)
T PRK07869 248 DVTGPGKQRLRIAVVTDSVT-GREADPEVREAVLATARLLEELGH--------RVEPVDLPVPASFVD----------DF 308 (468)
T ss_pred hhcccCCCCCEEEEECCccC-CCCCCHHHHHHHHHHHHHHHHCCC--------EEEEeCCCchHHHHH----------HH
Confidence 12345655544321 023467899999999999864332 111 11222111100 00
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHcCCCCCHHHHH-----HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEe
Q 008170 316 KALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFE-----RVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVI 390 (575)
Q Consensus 316 ~~~~~~~~~l~~~e~~~~~~~~~~~~~~~l~~~~~~-----~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~ 390 (575)
... ..+...+....... .....+.+.... ....+.. +..+|.++++.|+++++.+.++|+++|+||+
T Consensus 309 ~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~Dvll~ 380 (468)
T PRK07869 309 LLY----WGFLAFALVRGGRR---TFGPSFDRTRLDNLTLGLARHARR-NLHRLPLAIARLRRLRRVYARFFGTYDVVLT 380 (468)
T ss_pred HHH----HHHHHHHHHhhhhh---hcccccCHHHhhHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHhcCCEEec
Confidence 000 00000000000000 011112222222 2122222 3456778888889999999999999999999
Q ss_pred cCCCCCCCcCCccccc---chhh--HhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHhHHHHHHH
Q 008170 391 PTVSDPPLKLNTKKTY---SAEF--HDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYD 464 (575)
Q Consensus 391 Pt~~~~ap~~~~~~~~---~~~~--~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~~a~~~~~ 464 (575)
||+|.+||+++..... ...+ ...+..||.++|++|+|++|||+|+. +|||+||||+|++++|..||+++..+|+
T Consensus 381 Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~lL~~A~~le~ 460 (468)
T PRK07869 381 PTLAHTTPEIGYLDPTQDFDTVLDRLISYVAFTPLQNATGEPAISLPLGQSSDGLPVGMMFSADVGDEATLLELAYELEE 460 (468)
T ss_pred CCCCCCCCCCCccCccccchhhhHHHhcccccCccccccCCCceeeecCcCCCCCCeeEEEecCCCchHHHHHHHHHHHh
Confidence 9999999999753211 0111 11333579999999999999999987 8999999999999999999999999987
Q ss_pred H
Q 008170 465 S 465 (575)
Q Consensus 465 ~ 465 (575)
.
T Consensus 461 ~ 461 (468)
T PRK07869 461 A 461 (468)
T ss_pred c
Confidence 4
No 22
>PRK08186 allophanate hydrolase; Provisional
Probab=100.00 E-value=1.1e-85 Score=709.91 Aligned_cols=410 Identities=26% Similarity=0.330 Sum_probs=329.3
Q ss_pred chhHHHHHHHHhhcccccCCCCcCcEEeecc-CCCCCCCCC----CCCCCCCCCceEEeecccccCCccccCCChhhhcc
Q 008170 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFE-LIPFPQPPP----PAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRD 101 (575)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~a~~----~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~ 101 (575)
+.+|++|+++.+++||++ ++.+|+|++..+ +++++++++ ....+|||||||+|||||||+|++||+||+.|.
T Consensus 19 g~~t~~evv~a~l~ri~~-~~~~~a~i~~~~~~~a~~~A~~ld~~~~~~gPL~GVP~aVKDnidvaG~pTTaGs~~~~-- 95 (600)
T PRK08186 19 GTLTPRAVVAALYARIAA-VDDPEVWIHLRPEADLLAQAAALEARDPAALPLYGVPFAVKDNIDVAGLPTTAACPAFA-- 95 (600)
T ss_pred CCCCHHHHHHHHHHHHHh-cCCCCEEEEeCchHHHHHHHHHHhhhccccCCCCCCeEEeecceecCCcccCcCCHhHc--
Confidence 448999999999999998 679999999875 334443321 114689999999999999999999999999985
Q ss_pred CCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCC
Q 008170 102 HHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIG 181 (575)
Q Consensus 102 ~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgG 181 (575)
..+.+||++|+||++||||++||||||||+++.+|.|+.||+|+||||++|+|||||||||||||+|++++||||||||
T Consensus 96 -~~p~~DA~vV~rLr~AGAIilGKTN~~Efa~g~~g~n~~yG~t~NP~~~~~~~GGSSsGSAaAVAaG~~~~alGTDtgG 174 (600)
T PRK08186 96 -YTPERDATVVARLRAAGAIVIGKTNLDQFATGLVGTRSPYGAVRNAFDPEYVSGGSSSGSAVAVALGLVSFALGTDTAG 174 (600)
T ss_pred -CCCCcChHHHHHHHHCCCEEEeeecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCcceEeeecCCC
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc-------------ccCceE
Q 008170 182 CVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-------------RRARRL 248 (575)
Q Consensus 182 SiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-------------~~~~~l 248 (575)
|||+||+||||||||||+||||+.|++|.++++|++|||+||++|+..+++++.+.+..++ ....++
T Consensus 175 SiRiPAa~cGlvGlKPT~G~vs~~Gv~p~~~slD~vGp~Arsv~D~~~~l~vl~g~d~~D~~s~~~p~~~~~~~~~~lrI 254 (600)
T PRK08186 175 SGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTVDDADAVLAVMAGFDPADPYSRANPADAPAALPAGPRV 254 (600)
T ss_pred cchhhhHHhCceEEeCCCCcccCCCcccccccCCceecccCCHHHHHHHHHHhcCCCCCCcccccCCcccccccCCCCEE
Confidence 9999999999999999999999999999999999999999999999999999876543221 112355
Q ss_pred Eeccc-hhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhHHHHHHHHHHHHHh
Q 008170 249 IFADD-IFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQR 327 (575)
Q Consensus 249 ~~~~~-~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 327 (575)
.++.+ .... ..++++.++++++++.|...+. +.++...|.+.+. ....+...+.
T Consensus 255 gv~~~~~~~~--~~~~~v~~a~~~a~~~L~~~G~-------~v~ei~~~~~~~~----------------~~~~~~~~~~ 309 (600)
T PRK08186 255 GVPRAAQLEF--FGDAEAEAAFAAALARLEALGA-------ELVEIDFSPFLEA----------------ARLLYEGPWV 309 (600)
T ss_pred EEEcchhccc--cCCHHHHHHHHHHHHHHHHcCC-------eEEEecchhHHHH----------------HHHHHHHHHH
Confidence 55432 1111 1256788999999999864332 0111122222110 0001111122
Q ss_pred hhhhhhHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCCcccccc
Q 008170 328 YEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYS 407 (575)
Q Consensus 328 ~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~ 407 (575)
.|.+..+.++++.....+++.++.++..+..++..+|.+++..|+.+++.++++|+++|+||+||+|.+++ +++.....
T Consensus 310 ae~~~~~~~~~~~~~~~~~p~~~~~i~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~~D~Ll~Pt~p~~~~-~~~~~~~~ 388 (600)
T PRK08186 310 AERYAAVGEFLEAHPDAVDPVVRGIIAGAAAFSAADAFRALYRLAELRRAAEAVLAGIDALLVPTAPTHPT-IAEVAADP 388 (600)
T ss_pred HHHHHHHHHHHhhChhhcCHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCC-chhhcCCc
Confidence 23444556666666667899999999988889999999999999999999999999999999999999875 33221111
Q ss_pred hhhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHhHHHHHHHHh
Q 008170 408 AEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDSL 466 (575)
Q Consensus 408 ~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~~a~~~~~~~ 466 (575)
......+..||.++|++|+|+++||+|+. +|||+||||+|++++|..||+++..+|+..
T Consensus 389 ~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le~~~ 448 (600)
T PRK08186 389 IGLNSRLGTYTNFVNLLDLCALAVPAGFRADGLPFGVTLIAPAFADQALADLAARLQAAL 448 (600)
T ss_pred hhhhhhhhhccccccccCCCeEEEecccCCCCCCeeEEEEcCCCCHHHHHHHHHHHHhhc
Confidence 11222233589999999999999999987 899999999999999999999999999864
No 23
>PRK08137 amidase; Provisional
Probab=100.00 E-value=2.5e-85 Score=701.18 Aligned_cols=409 Identities=23% Similarity=0.257 Sum_probs=321.1
Q ss_pred HHHHHhhch-----hHHHHHHHHhhcccccC---CCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeeccc
Q 008170 20 VIGVSVVGF-----VVLAETLRRRRNPKLNG---RVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVF 84 (575)
Q Consensus 20 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~ 84 (575)
.|+.+|+.+ +|++|+++.+++||++. ||.+|||++..++ ++++|+ .+..+||||||||+|||+|
T Consensus 6 ~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~ 84 (497)
T PRK08137 6 ERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPD-AEADAAALDAERKAGKVRGPLHGIPVLLKDNI 84 (497)
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceeEEEEeCHH-HHHHHHHHHHHHhcCCCCCCcCCceeeeecce
Confidence 366666644 99999999999999976 7899999998764 444442 3456799999999999999
Q ss_pred ccC-CccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeeccccccccc-----CCCCCCCCCCCCCCCCCCCCCCCC
Q 008170 85 DVK-GYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG-----ITGENKHYGTPVNPQMPSHIPGGS 158 (575)
Q Consensus 85 ~~~-G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~-----~~~~n~~~G~~~NP~~~~~~~GGS 158 (575)
+|+ |++||+||+.+.+ .++.+||++|+|||+|||||+||||||||+++ .+|+|++||+|+||||++|+||||
T Consensus 85 ~v~~G~~tt~Gs~~~~~--~~~~~DA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~~~~~~~GGS 162 (497)
T PRK08137 85 DAADPMPTTAGSLALAG--NRPTRDAFLVARLRDAGAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRSPCGS 162 (497)
T ss_pred eecCCCCcCcCcHhhcC--CCCCcCcHHHHHHHHCCCEEEeecChHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcC
Confidence 999 9999999999875 57889999999999999999999999999954 446899999999999999999999
Q ss_pred ChHHHHHHHhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCC
Q 008170 159 SSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLN 238 (575)
Q Consensus 159 SgGsaaaVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~ 238 (575)
|||||||||+|++++|||||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+
T Consensus 163 SgGsAaAVAaG~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~vl~g~d 242 (497)
T PRK08137 163 SSGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVLTAIAGGD 242 (497)
T ss_pred ccHHHHHHHcCCCceeeecCCCCccccchhhcCeeeecCCCCceeCCCCCCcccccCcccCeeCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred CCCc--------------------ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchh-hccCcc
Q 008170 239 AVEP--------------------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYI-ASNVPS 297 (575)
Q Consensus 239 ~~~~--------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v-~~~~p~ 297 (575)
..++ .++.|+++..+.+ ..++++.++++++++.|+..+. .+ +..+|.
T Consensus 243 ~~d~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~----~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~~ 310 (497)
T PRK08137 243 PADPATASAPAPAVDYVAALDADALRGARLGVARNYL----GYHPEVDAQFERALAELKAAGA--------VVIDVVDLD 310 (497)
T ss_pred CCCcccccCCCCccchhhhccccccCCCEEEEEchhc----cCCHHHHHHHHHHHHHHHHCCC--------EEEeccCCc
Confidence 2211 1223555554432 1467889999999999864332 11 111222
Q ss_pred hHHhhhccCCCCCchhHHHHHHHHHHHHHhhhhhhhHHHH----------------HH-------HcCCCCCHHHHHHHH
Q 008170 298 LKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEW----------------VK-------SAKPRLGYNVFERVL 354 (575)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~----------------~~-------~~~~~l~~~~~~~l~ 354 (575)
+..+... +..+...|+...+..+ +. .....+++.++.++.
T Consensus 311 ~~~~~~~-----------------~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (497)
T PRK08137 311 DGDWGEA-----------------EKVVLLHEFKAGLNAYLRSTAPHAPVRTLADLIAFNRAQHAREMPYFGQELFEQAQ 373 (497)
T ss_pred hhhHHHH-----------------HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhccchhhhcccCHHHHHHHH
Confidence 2111000 0001111111111111 11 112457788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHH--HHHHHHHhC--CCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCccc
Q 008170 355 EAINTTQDNIKILYKVRNEM--RAALQRLLK--DDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVA 430 (575)
Q Consensus 355 ~~~~~s~~~~~~a~~~r~~~--~~~~~~~~~--~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~Pais 430 (575)
.+..++..+|.++++.++++ ++.+.++|+ ++|+||+||++ +||+++.... ..+. ..+|.++|++|+|++|
T Consensus 374 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~-~ap~~~~~~~--~~~~---~~~t~~~nl~G~Pais 447 (497)
T PRK08137 374 AAPGLDDPAYLDALADAKRLAGPEGIDAALKEHRLDALVAPTTG-PAWLIDLING--DSFG---GSSSTPAAVAGYPHLT 447 (497)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEeCCCC-CCcccccccc--cccc---cccccccHhhCCCeEE
Confidence 88888999999988655554 479999997 68999999999 8888864211 1111 1367899999999999
Q ss_pred ccccccCCCCcccccccccCCchhHHhHHHHHHHHh
Q 008170 431 IPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSL 466 (575)
Q Consensus 431 vP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~~ 466 (575)
||+|..+|||+||||+|++|+|..||+++.++|+..
T Consensus 448 vP~g~~~GlPvGvQlig~~~~d~~LL~~a~~lE~~~ 483 (497)
T PRK08137 448 VPMGQVQGLPVGLSFIGAAWSEARLLELGYAYEQAT 483 (497)
T ss_pred EeCCCCCCcCeEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999863
No 24
>PRK07139 amidase; Provisional
Probab=100.00 E-value=6.3e-82 Score=662.58 Aligned_cols=389 Identities=25% Similarity=0.336 Sum_probs=299.3
Q ss_pred CCCcCcEEeeccCCCCCCCCCCCCCCCCCCceEEeecccccCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEee
Q 008170 46 RVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGK 125 (575)
Q Consensus 46 ~~~~~a~~~~~~~~~~~~a~~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GK 125 (575)
+..+|++.+.+.+.. ...||||||||+|||+|+++|++||+||+.+.+ .++.+||++|+||++|||||+||
T Consensus 17 ~~~~~~~~~~~~~~~-------~~~gpL~GvPvavKD~~~v~G~~tt~Gs~~l~~--~~~~~dA~vV~rLr~AGAIilGK 87 (439)
T PRK07139 17 NDKNNAVSYVFDEKN-------NKDGPLANCVFTIKDNFATSEGPTHASSKSLEN--FKPSYNATVVQKLINAGAKPVAK 87 (439)
T ss_pred ccccCeEEEEecccC-------CCCCCcCCcEEEEEcceecCCCccCcChHHHcc--CCCCCchHHHHHHHHCCCEEEEe
Confidence 467788888754431 247899999999999999999999999999864 56789999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCccccccccccceeeeCCCCCccCC
Q 008170 126 TVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMI 205 (575)
Q Consensus 126 tn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~ 205 (575)
||||||+++.+|.|++||+|+||||++|+|||||||||||||++ +++|||||||||||+|||||||||||||+||||+.
T Consensus 88 Tn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGSAAaVAag-~~~alGtDtgGSIRiPAa~cGvvGlKPT~G~vs~~ 166 (439)
T PRK07139 88 VHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSAATFNKN-ISFAIGSDTGDSVRLPASFIGKVGFKPSYGAISRY 166 (439)
T ss_pred echhhHhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHCC-CCEEEEcCCCcchhhhHHHcCeEEEeCCCCCcCCC
Confidence 99999999999999999999999999999999999999999997 79999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc------------ccCceEEeccchhhhcCCCchHHHHHHHHHH
Q 008170 206 GVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP------------RRARRLIFADDIFQLSKVPKLKTIHVISKAI 273 (575)
Q Consensus 206 G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~ 273 (575)
|++|+++++|++|||+|+++|++.+++++.+.+..++ ..+.++.+... + ...++++.+++++++
T Consensus 167 G~~p~~~sld~~Gp~arsv~D~a~~~~vl~g~d~~d~~~~~~~~~~~~~~~~lrig~~~~-~---~~~~~~v~~a~~~a~ 242 (439)
T PRK07139 167 GLFAYASSLDTVAYFTHNVNDAIILSKVLFGKDENDLTSVDVKINNVKKTKPKKVAYLDC-F---KELEEYVAKKYKKLI 242 (439)
T ss_pred CcccCcccCCccccccCCHHHHHHHHHHHcCCCcCCccccccCcccccccCCCEEEEECc-c---ccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999987543221 12345555322 1 123577889999999
Q ss_pred HHHhCCCCCccccccchhh-ccCcc--hHHhhhccCCCCCchhHHHHHHHHHHHHHhh---h-----hhhhHHHHHH-Hc
Q 008170 274 ESLSGYQNPEHMNVGQYIA-SNVPS--LKGLRAQSTSPENGTATLKALSSVMLSLQRY---E-----FKTIYEEWVK-SA 341 (575)
Q Consensus 274 ~~l~g~~~~~~~~~~~~v~-~~~p~--l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---e-----~~~~~~~~~~-~~ 341 (575)
+.|...+. .++ ..+|. +......+ ......+....+..+ . ....+..++. ..
T Consensus 243 ~~L~~~G~--------~v~~~~~~~~~~~~~~~~~--------~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (439)
T PRK07139 243 NILKSENI--------EVEKIKIDEKLLKAIKPVY--------KIISYSEASSNLANLNGIAFGNREKGSSWEEIMINTR 306 (439)
T ss_pred HHHHHCCC--------EEEEeCCChhHHHHHHHHH--------HHHHHHHHHHHHHhhcccccccccccccHHHHHHhcc
Confidence 98864432 111 11121 01000000 000000111111000 0 0001222322 23
Q ss_pred CCCCCHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCCcccccchhhHhhhhc
Q 008170 342 KPRLGYNVFERVLEAINTTQ-----DNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLV 416 (575)
Q Consensus 342 ~~~l~~~~~~~l~~~~~~s~-----~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~ 416 (575)
...+++.++.++..+..++. .+|.++++.|+++++.++++|+++|+||+||+|++||+++........+. .+
T Consensus 307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~-~~-- 383 (439)
T PRK07139 307 SEGFGKMVQKRLILGSYFLEEENQEKYFLKAKKVRRVIKNYYESIHNKFDIVIYPAYADIAPDIDENENKSDNYM-DY-- 383 (439)
T ss_pred hhccCHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccchhhhh-hh--
Confidence 34588889988887775553 35888999999999999999999999999999999999875311111221 11
Q ss_pred cccccccCCCCcccccccccCCCCcccccccccCCchhHHhHHHHHHHHhh
Q 008170 417 LSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQ 467 (575)
Q Consensus 417 ~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~~~ 467 (575)
+|.++|++|+|+||||+|..+|||+||||+|++|+|..||++++++|+.+.
T Consensus 384 ~t~~~nl~G~PaisvP~g~~~glPiGlqivg~~~~D~~LL~~A~~lE~~~~ 434 (439)
T PRK07139 384 ILTISNLVGNPSLSIPLGKYNNLPFNLAIDSKIYDDEKLLSYSLYIEELIK 434 (439)
T ss_pred cccCcccCCCCeEEEeCCCCCCCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence 378899999999999999559999999999999999999999999998654
No 25
>TIGR02713 allophanate_hyd allophanate hydrolase. Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.
Probab=100.00 E-value=4.2e-82 Score=675.08 Aligned_cols=389 Identities=28% Similarity=0.339 Sum_probs=306.6
Q ss_pred CcEEeecc-CCCCCCCC------CCCCCCCCCCceEEeecccccCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeE
Q 008170 50 GAFLERFE-LIPFPQPP------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATC 122 (575)
Q Consensus 50 ~a~~~~~~-~~~~~~a~------~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii 122 (575)
|||++... ++++++|+ .....+|||||||+|||||||+|++||+||+.|. .++.+||++|+|||+||||+
T Consensus 2 ~a~i~~~~~e~al~~A~~ld~~~~~~~~~PL~GvP~aVKD~idvaG~pTTaGs~~~~---~~p~~DA~vV~rLr~AGAIi 78 (561)
T TIGR02713 2 EAWISLLSEEDLLAQAAALDARDARPERLPLYGVPFAVKDNIDVAGLPTTAACPAFA---YTPEEDATVVALLRAAGAIV 78 (561)
T ss_pred cEEEEeCCHHHHHHHHHHHHHHHhcCCCCCccCCeEEEEcccccCCCccCcCCHhHc---CCCCcCHHHHHHHHHCCCEE
Confidence 56776643 33333332 1123589999999999999999999999999885 36789999999999999999
Q ss_pred EeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCccccccccccceeeeCCCCCc
Q 008170 123 IGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTV 202 (575)
Q Consensus 123 ~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v 202 (575)
+||||||||+++.+|.|++||.|+||||++|+|||||||||||||+|++++||||||||||||||+||||||||||+|||
T Consensus 79 iGKTN~~Efa~g~~g~n~~~G~t~NP~d~~~~~GGSSsGSAaAVAaG~v~~alGTDtgGSiRiPAa~cGlvGlKPT~G~v 158 (561)
T TIGR02713 79 VGKTNLDQFATGLVGTRSPYGAVRNAFDPAYISGGSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLV 158 (561)
T ss_pred EEEeCchHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCceEEeecCCCcchhhhHHhCceeEecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc-------------ccCceEEeccchhhhcCCCchHHHHHH
Q 008170 203 SMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-------------RRARRLIFADDIFQLSKVPKLKTIHVI 269 (575)
Q Consensus 203 ~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-------------~~~~~l~~~~~~~~~~~~~~~~~~~~~ 269 (575)
|+.|++|.++++|++|||+||++|+..+++++.+.+..++ ..+.++.++.+... ....++++.+++
T Consensus 159 s~~Gv~p~~~slD~vG~~Arsv~D~~~~l~v~~g~d~~d~~s~~~p~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~ 237 (561)
T TIGR02713 159 STTGVVPACRSLDCVSIFALTVADAEQVLRIAAAPDARDPYSRPLPAAALRRLPPPPRVGVPRAAQL-EFFGDSQAEAAF 237 (561)
T ss_pred cCCCccccccCCCeeechhCCHHHHHHHHHhhcCCCCcCccccCCCchhhcccCCCCEEEEECchhc-CCCCCHHHHHHH
Confidence 9999999999999999999999999999999876543221 02235555541110 011246788999
Q ss_pred HHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhHHHHHHHHHHHHHhhhhhhhHHHHHHHcCCCCCHHH
Q 008170 270 SKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNV 349 (575)
Q Consensus 270 ~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~l~~~~ 349 (575)
+++++.|+..+. +.++..+|.+.+. ...+ +...+..+.+..+..+++...+.++|.+
T Consensus 238 ~~a~~~L~~~G~-------~v~~v~~~~~~~~-------------~~~l---~~~~~~~e~~~~~~~~~~~~~~~~~p~~ 294 (561)
T TIGR02713 238 AAAVERLEALGV-------EVVEIDFAPFLET-------------AALL---YEGPWVAERYAAVGEFVEAQPDALDPVV 294 (561)
T ss_pred HHHHHHHHHCCC-------EEEEecchhHHHH-------------HHHH---HHHHHHHHHHHHHHHHHhhChhhcCHHH
Confidence 999999874332 0111122221110 0000 1111112333445556666667789999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCcc
Q 008170 350 FERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQV 429 (575)
Q Consensus 350 ~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~Pai 429 (575)
+.++..+..++..+|.+++++|+.+++.++++|+++|+||+||+|.+++..+ ...........+..||.++|++|+|++
T Consensus 295 ~~~l~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~~DvLl~Pt~p~~~~~~~-~~~~~~~~~~~~~~yT~~~Nl~glPAi 373 (561)
T TIGR02713 295 RGIITSATRFSAADAFAAQYRLAALRRKAEALLAGVDVLLVPTAPTHPTIEE-VLADPVGLNSRLGTYTNFVNLLDLCAV 373 (561)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCchh-ccCCchhhhhhhhcccccccccCCceE
Confidence 9999988889999999999999999999999999999999999999875432 211111222233458999999999999
Q ss_pred ccccccc-CCCCcccccccccCCchhHHhHHHHHHHHh
Q 008170 430 AIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDSL 466 (575)
Q Consensus 430 svP~G~~-~GlPvGlqivg~~~~d~~ll~~a~~~~~~~ 466 (575)
+||+|+. +|||+||||+|++++|..||+++..+|+..
T Consensus 374 svP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le~~~ 411 (561)
T TIGR02713 374 AVPAGFRSDGLPFGVTLIGPAFHDAALASLGRRLQAAS 411 (561)
T ss_pred EeecccCCCCCCEEEEEEcCCCChHHHHHHHHHHHhcc
Confidence 9999987 899999999999999999999999999853
No 26
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence. They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....
Probab=100.00 E-value=1.2e-83 Score=686.76 Aligned_cols=397 Identities=29% Similarity=0.377 Sum_probs=298.9
Q ss_pred HHHHHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCCccccCCChhhhccCCCC
Q 008170 33 ETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEA 105 (575)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~~~~~ 105 (575)
|+++.+++||+++|+.+|||++.+++.++++|+ .+..+||||||||+|||+|+++|++||+||..|.+ .++
T Consensus 1 e~~~~~~~ri~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~pL~Gip~~vKD~~~~~g~~tt~G~~~~~~--~~~ 78 (441)
T PF01425_consen 1 ELVEAYLARIEAYNPELNAFVEVDFDEALAQARELDARRARGKPRGPLHGIPISVKDNIDVAGLPTTAGSPALAD--NPP 78 (441)
T ss_dssp HHHHHHHHHHHHHHHHH--EEEEEHHHHHHHHHHHHHHHHTTSSSSTTTT-EEEEETTBSBTTSBB-TTSGGGTT--BBB
T ss_pred CHHHHHHHHHHHhCcccCEEEEECcHHHHHHHHHHHHHHhhcCCCCCCCCCceeccccccccccccccccccccC--cCc
Confidence 789999999999999999999998887776664 45678999999999999999999999999999975 678
Q ss_pred CCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCcccc
Q 008170 106 ERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRV 185 (575)
Q Consensus 106 ~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiRi 185 (575)
.+||++|+||++||||++||||||||+++.++.|+.||+|+||||+.++|||||||||||||+|++++|||||||||||+
T Consensus 79 ~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~Np~~~~~~~GGSS~Gsaaavaag~~~~a~GtDtgGSiR~ 158 (441)
T PF01425_consen 79 TEDAPVVQRLRAAGAIIIGKTNMPEFAMGPTTSNPLYGRTRNPWNPSRTPGGSSGGSAAAVAAGFVPLAIGTDTGGSIRI 158 (441)
T ss_dssp SSS-HHHHHHHHTT-EEEEEE--SGGGCSSSSTTTTTEE-EBTTBTTBE--SSSHHHHHHHHTTSSSEEEEEESSSTTHH
T ss_pred ccccchhhheecccccceeeecccceeccccccccccccccCcccccccccccccccccccceecccccccccccccccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc-------------------ccCc
Q 008170 186 PASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-------------------RRAR 246 (575)
Q Consensus 186 PAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-------------------~~~~ 246 (575)
||+||||||||||+|+||+.|++|+++++|++|||+||++|+..+++++.+.+..+. ..+.
T Consensus 159 PAa~~Gv~GlkPT~G~vs~~G~~~~~~~~d~~GpmaRsv~Dl~~~l~vl~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~l 238 (441)
T PF01425_consen 159 PAAFCGVVGLKPTRGRVSRDGVFPLSPSFDTVGPMARSVEDLALLLDVLAGPDPWDPDSLPVPPPPPDFDAPLPKSLKGL 238 (441)
T ss_dssp HHHHHTSEEEE-STTSS--TTB-CSSTTT-EEEEEESSHHHHHHHHHHHBSCBTTBTTSCSTT--SS-CSTTTTSTTTT-
T ss_pred chhccccceeccccccccccccccccccccccccccCcHHHHHHHHHHhcCCCccCCCccccccccccccccccccccCc
Confidence 999999999999999999999999999999999999999999999999987543211 1234
Q ss_pred eEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhHHHHHHHHHHHHH
Q 008170 247 RLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQ 326 (575)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 326 (575)
++.+..+.+. ....++++.++++++++.|+..+. ..++..+|.+...... +..+.
T Consensus 239 rIGv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~-------~vv~~~~p~~~~~~~~-----------------~~~~~ 293 (441)
T PF01425_consen 239 RIGVPRDDGQ-WVPVDPEVRRAFEEAAEALEAAGA-------EVVEVDLPDLDEAMDA-----------------YYRIF 293 (441)
T ss_dssp EEEEEGGGG--SSTSSHHHHHHHHHHHHHHHHTT--------EEEEE--TTGGHHHHH-----------------HHHHH
T ss_pred cccccccccc-cccccHHHHHHHHHHHHhhccccc-------ccccccCchHHHHHHH-----------------HhhhH
Confidence 5666655431 123467899999999999974332 1112233433322110 01111
Q ss_pred hhhhhhh------HHHHH-HHcCCCCCHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCC
Q 008170 327 RYEFKTI------YEEWV-KSAKPRLGYNVFERVLEAINTTQ-----DNIKILYKVRNEMRAALQRLLKDDKILVIPTVS 394 (575)
Q Consensus 327 ~~e~~~~------~~~~~-~~~~~~l~~~~~~~l~~~~~~s~-----~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~ 394 (575)
..++... +..+. ......+.+.+..++..+..... ..|.++++.|.++++.+.++|+++|+||+||++
T Consensus 294 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~ 373 (441)
T PF01425_consen 294 VSEGAANLARYKDFARLLAKWRDPPLSPIVRSRLEQGAAISSAEDDSEYYLQAQRRRARLRRRFDELFEEYDALLTPTTP 373 (441)
T ss_dssp HHHHHHHHTTTCSHHHHHHHHHHHHSHHHHHHHHHHHHHHHCTTTTTTHHHHHHHHHHHHHHHHHHHHHHSSEEEEESSS
T ss_pred HHHHHHHHhhhhHHHHhhhcccccccccchhhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHhhcceecccCCC
Confidence 1111111 11111 12223455667666665543322 238889999999999999999999999999999
Q ss_pred CCCCcCCccccc---ch--hhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHH
Q 008170 395 DPPLKLNTKKTY---SA--EFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLL 456 (575)
Q Consensus 395 ~~ap~~~~~~~~---~~--~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll 456 (575)
.+||+++..... .. .....+..+|.++|++|+|++|||+|+. +|||+||||+|++|+|..||
T Consensus 374 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~g~PaisvP~g~~~~GlPvGvqlvg~~~~D~~LL 441 (441)
T PF01425_consen 374 VPAPPIGEPSPLGPDYTALWNLLDFTAYTSPANLAGLPAISVPVGFDPDGLPVGVQLVGRPGSDEKLL 441 (441)
T ss_dssp SS-BBTTTTCCCTSCHHHHHHHHTTTTTTHHHHHHTHHEEEEEEEEETTTEEEEEEEEESTTBHHHHH
T ss_pred cCCCccccccccccchhhhhhhhhhhccccccccccCcceeeecCCCCCCcCEeEEEECCCCCccCcC
Confidence 999999875421 11 1122344578999999999999999997 89999999999999999986
No 27
>PRK06828 amidase; Provisional
Probab=100.00 E-value=3.2e-81 Score=661.98 Aligned_cols=396 Identities=21% Similarity=0.224 Sum_probs=304.1
Q ss_pred chhHHHHHHHHhhcccccCC---CCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCC-ccccCCC
Q 008170 27 GFVVLAETLRRRRNPKLNGR---VDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKG-YVTGFGS 95 (575)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G-~~tt~Gs 95 (575)
+.+|++|+++.+++||.++| +.+|||++.+++ ++++|+ .+...||||||||+|||||+|+| ++||+||
T Consensus 25 g~~t~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~v~gg~~tt~Gs 103 (491)
T PRK06828 25 GKLTSKELVMYYLHRIAKYDQDGPKINSILEINPD-AIFIAEALDHERKIKGVRGPLHGIPVLLKDNIETNDSMHTSAGT 103 (491)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCeeEEEEecCHH-HHHHHHHHHHHHhcCCCCCCccCceeeeeeeEEecCCCcCCcCc
Confidence 45999999999999999999 589999998766 444443 24557999999999999999996 9999999
Q ss_pred hhhhccCCCCCCchHHHHHHHHCCCeEEeeccccccccc-----CCCCCCCCCCCCCCCCC---CCCCCCCChHHHHHHH
Q 008170 96 PDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG-----ITGENKHYGTPVNPQMP---SHIPGGSSSGSAVAVA 167 (575)
Q Consensus 96 ~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~-----~~~~n~~~G~~~NP~~~---~~~~GGSSgGsaaaVA 167 (575)
+.+.+ .++.+||++|+|||+|||||+||||||||+++ .+|.|++||+|+||||+ +|+|||||||||||||
T Consensus 104 ~~~~~--~~~~~da~vV~~Lr~aGaii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~d~~~~~r~pGGSSgGsAaaVA 181 (491)
T PRK06828 104 IALEQ--HISSEDAFLVTKLREAGAVILGKANMTELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVGGSSTGSAIAVA 181 (491)
T ss_pred HHHcC--CCCCCChHHHHHHHHCCCEEEeecChHHHhhccCCCCCCCcCCCCCCcCCCCCCccCCcCCCcCchHHHHHHH
Confidence 99875 67889999999999999999999999999974 58899999999999999 6899999999999999
Q ss_pred hcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCC------
Q 008170 168 AQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE------ 241 (575)
Q Consensus 168 ag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~------ 241 (575)
+|+++++||||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..+
T Consensus 182 ag~~~~aiGtDtgGSiRiPAa~cGvvGlKPT~G~vs~~G~~p~~~s~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~ 261 (491)
T PRK06828 182 ANFTVVSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAILLGSLTGVDEKDVVTHKS 261 (491)
T ss_pred cCCCceEeecCCCCccccchhhcCceeecCCCCCccCCCCCCCccCCCeeccccCCHHHHHHHHHHHhCCCccCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987644211
Q ss_pred ---------------cccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCC--CccccccchhhccCcchHHhhhc
Q 008170 242 ---------------PRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQN--PEHMNVGQYIASNVPSLKGLRAQ 304 (575)
Q Consensus 242 ---------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~--~~~~~~~~~v~~~~p~l~~~~~~ 304 (575)
...+.++++..+........++++.++++++++.|+..+. ++..+ +|.+.....
T Consensus 262 ~~~~~~~~~~~~~~~~~~~lrigv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~--------~p~~~~~~~- 332 (491)
T PRK06828 262 EGIAEHDYTKYLDANGLNGAKIGVYNNAPKEYYESGEYDEKLFKETIEVLRSEGATVVEDID--------IPSFHREWS- 332 (491)
T ss_pred CcCCCCchhhhhccccCCCCEEEEEcCccccccCCCHHHHHHHHHHHHHHHhcCCEEEeccc--------CccchhHHH-
Confidence 0123455553221100011357889999999999874332 11111 122111000
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhh----hhh---hhHHHHH------HHcCCCCCHHHHH-HHHHHhcCCHHHHHHHHHH
Q 008170 305 STSPENGTATLKALSSVMLSLQRY----EFK---TIYEEWV------KSAKPRLGYNVFE-RVLEAINTTQDNIKILYKV 370 (575)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~~~----e~~---~~~~~~~------~~~~~~l~~~~~~-~l~~~~~~s~~~~~~a~~~ 370 (575)
......+....+..+ ... ....+.+ ......+++.+.. +++.+..++..+|.++++.
T Consensus 333 ---------~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~y~~a~~~ 403 (491)
T PRK06828 333 ---------WGVLLYELKHSLDNYLSKLPSTIPVHSISELMEFNENIAERALKYGQTKLERRKDFPNTLRNPEYLNARLE 403 (491)
T ss_pred ---------HHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHhhhchhhhhccCHHHHHHHHhcCCCCChHHHHHHHHH
Confidence 000000110000000 000 0001111 1122356775444 4666777889999999888
Q ss_pred HHHH--HHHHHHHhCC--CCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCccccccccc-CCCCccccc
Q 008170 371 RNEM--RAALQRLLKD--DKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISF 445 (575)
Q Consensus 371 r~~~--~~~~~~~~~~--~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqi 445 (575)
|..+ ++.++++|++ +|+||+||++.. .++|++|+|++|||+|+. +|||+||||
T Consensus 404 r~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~----------------------~~~~~~GlPaisvP~G~~~~GlPvGlQl 461 (491)
T PRK06828 404 DIYFSQEQGIDFALEKYNLDAILFPSYIGS----------------------TICAKAGYPSIAIPAGYMEGGRPFGITL 461 (491)
T ss_pred HHHhhhHHHHHHHHHhcCCCEEEeCCCCcc----------------------cchhhcCCCeEEeecCCCCCCcCeEEEE
Confidence 8775 4799999984 899999998753 234699999999999987 899999999
Q ss_pred ccccCCchhHHhHHHHHHHH
Q 008170 446 ITYHGGDKFLLDTVLDLYDS 465 (575)
Q Consensus 446 vg~~~~d~~ll~~a~~~~~~ 465 (575)
+|++|+|..||+++.++|+.
T Consensus 462 ig~~~~D~~LL~~A~a~E~~ 481 (491)
T PRK06828 462 ASTAFSEGTLIKLAYAFEQA 481 (491)
T ss_pred ECCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999885
No 28
>PRK11910 amidase; Provisional
Probab=100.00 E-value=9.8e-80 Score=650.40 Aligned_cols=391 Identities=24% Similarity=0.285 Sum_probs=296.4
Q ss_pred HHHHhh-----chhHHHHHHHHhhcccccCCC---CcCcEEeeccCCCCCCCCC-----CCCCCCCCCceEEeecccccC
Q 008170 21 IGVSVV-----GFVVLAETLRRRRNPKLNGRV---DFGAFLERFELIPFPQPPP-----PAARQPLAGLKFAIKDVFDVK 87 (575)
Q Consensus 21 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~~a~~-----~~~~gpL~Gvpi~vKD~~~~~ 87 (575)
++.+|+ +.+|++|+++.+++||.++|+ .+|||++..++ ++++|+. ...+||||||||+|||||+++
T Consensus 166 ti~~L~~~l~~g~lT~~elv~a~L~RI~~~n~~g~~LnA~i~~~~~-Al~~A~~lD~~~~~~~gPL~GIPv~VKDni~t~ 244 (615)
T PRK11910 166 DVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPT-IIAEAEQLDKENTTNKSALYGMPVLLKDNIGTK 244 (615)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceeEEEEcCHH-HHHHHHHHHHHhccCCCCcCCCEEEEEcCcccC
Confidence 455555 339999999999999999997 79999998875 3443331 123589999999999999999
Q ss_pred CccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeeccccccccc-----CCCCCCCCCCCCCCCCCCCCCCCCChHH
Q 008170 88 GYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG-----ITGENKHYGTPVNPQMPSHIPGGSSSGS 162 (575)
Q Consensus 88 G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~-----~~~~n~~~G~~~NP~~~~~~~GGSSgGs 162 (575)
|++||+||.+|.+ .++.+||++|+|||+|||||+|||||+||+++ .+++|++||+|+||||++|+||||||||
T Consensus 245 G~pTTaGS~al~~--~~p~~DA~vV~rLr~AGAIIlGKTNm~EfA~~~~~~~~~g~s~~~G~t~NP~~~~r~pGGSSsGS 322 (615)
T PRK11910 245 ELPTSAGTVALKD--WVIGKDATIVENLKANGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDPSGSSSGS 322 (615)
T ss_pred CCccCcccHhhcC--CCCCCCHHHHHHHHHCCCEEEEEeCcchhhhCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCchH
Confidence 9999999999975 67889999999999999999999999999976 3578899999999999999999999999
Q ss_pred HHHHHhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCC-
Q 008170 163 AVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE- 241 (575)
Q Consensus 163 aaaVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~- 241 (575)
|||||+|++++|||||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+|.|++.+++++.+.+..+
T Consensus 323 AAAVAaG~a~~AiGTDTgGSIR~PAa~cGvVGlKPT~G~vSr~GviPls~slDtvGPmaRsV~D~a~ll~vi~g~~~~~~ 402 (615)
T PRK11910 323 ATAATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVNDAYLTTNALTNTTSNPP 402 (615)
T ss_pred HHHHhcCCceEEeecCCCCccccchHHcCceeEecCCCCCCCCCCcCCcCCCCeeccccCCHHHHHHHHHHhcCCCCcCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988654321
Q ss_pred ----cccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCC--CccccccchhhccCcchHHhhhccCCCCCchhHH
Q 008170 242 ----PRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQN--PEHMNVGQYIASNVPSLKGLRAQSTSPENGTATL 315 (575)
Q Consensus 242 ----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~--~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~ 315 (575)
...+.|++++.+. .++.+..+++++++.|+..+. ++.. .+|.+...
T Consensus 403 l~~~~lkglRIGv~~~~------~~~~v~~a~~~a~~~L~~~Ga~Vve~~--------~~p~~~~~-------------- 454 (615)
T PRK11910 403 LSTDALKGKRIGLLADG------ESNEETAVIKKIKLDLQKAGATIIEGI--------AVGEFEQK-------------- 454 (615)
T ss_pred cCcccCCCCEEEEECCC------CCHHHHHHHHHHHHHHHHCCCEEEeCC--------CCccHHHH--------------
Confidence 1234566654331 235677788888888764332 1111 12222111
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHc-----------------C---CCCCHHHHHHHHHHh-cCCHHHH-HHHHHHHHH
Q 008170 316 KALSSVMLSLQRYEFKTIYEEWVKSA-----------------K---PRLGYNVFERVLEAI-NTTQDNI-KILYKVRNE 373 (575)
Q Consensus 316 ~~~~~~~~~l~~~e~~~~~~~~~~~~-----------------~---~~l~~~~~~~l~~~~-~~s~~~~-~~a~~~r~~ 373 (575)
...+..+...|+...+..|++.. . ..+++. .++..+. ..+.+++ ..+++.|+.
T Consensus 455 ---~~~~~~l~~~E~~~~l~~yl~~~~~~v~sL~dl~~fn~~~~~~~~~~gq~--~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (615)
T PRK11910 455 ---DTDYASLLNADFKHDLNQFLQVNHSPMSTLESIIQFNQTNPTRNMKYGQS--ELVKSQQSTITKQQADNLASNLIQS 529 (615)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhcCcccccCcCHH--HHHhhhccCCCHHHHHHHHHHHHHH
Confidence 01111222234444444443211 1 223333 1122122 1343332 235667777
Q ss_pred HHHHHHHHhC--CCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCccccccccc--CCCCccccccccc
Q 008170 374 MRAALQRLLK--DDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY--NEHPISISFITYH 449 (575)
Q Consensus 374 ~~~~~~~~~~--~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~--~GlPvGlqivg~~ 449 (575)
+++.++++|+ ++|+||+|+.... ....++++|+|+||||+|+. +|||+||||+|++
T Consensus 530 ~~~~l~~~~~~~~lDalv~P~~~~~--------------------~~~~~~~aG~PaItVP~G~~~~~GlPvGlqliG~~ 589 (615)
T PRK11910 530 SQNELDSVLQKDKLDAVVTIGMGGS--------------------VMFLAPIAGNPELTIPAGYDEESNQPISLTFITAR 589 (615)
T ss_pred HHHHHHHHHHHCCCcEEEeCCCCCc--------------------chhhhhhcCCCeEEecccCCCCCCcCeEEEEECCC
Confidence 8888999996 7999999973210 01223599999999999987 4999999999999
Q ss_pred CCchhHHhHHHHHHHHhh
Q 008170 450 GGDKFLLDTVLDLYDSLQ 467 (575)
Q Consensus 450 ~~d~~ll~~a~~~~~~~~ 467 (575)
|+|..||++++++|+...
T Consensus 590 ~sE~~LL~~A~a~Eq~t~ 607 (615)
T PRK11910 590 NSDKILLNMGYAYEQQSK 607 (615)
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 999999999999998654
No 29
>PRK06707 amidase; Provisional
Probab=100.00 E-value=2.6e-78 Score=642.58 Aligned_cols=382 Identities=22% Similarity=0.278 Sum_probs=291.4
Q ss_pred chhHHHHHHHHhhcccccCC---CCcCcEEeeccCCCCCCCC------CCCCCCCCCCceEEeeccccc-CCccccCCCh
Q 008170 27 GFVVLAETLRRRRNPKLNGR---VDFGAFLERFELIPFPQPP------PPAARQPLAGLKFAIKDVFDV-KGYVTGFGSP 96 (575)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~a~------~~~~~gpL~Gvpi~vKD~~~~-~G~~tt~Gs~ 96 (575)
+.+|++|+++.+++||.+.| +.+|||++..++ ++++|+ .....+|||||||+|||||++ +|++||+||.
T Consensus 83 g~lt~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~~~pL~GiPi~vKD~i~~~~g~~TtaGs~ 161 (536)
T PRK06707 83 GKLSYEELTSIYLFRIQEHDQNGITLNSVTEINPN-AMEEARKLDQERSRNKKSNLYGIPVVVKDNVQTAKVMPTSAGTY 161 (536)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCceEEEEECCHH-HHHHHHHHHHHHhcCCCCCcCCCeEEEecccccCCCCccCcccH
Confidence 44999999999999999998 579999998765 444332 112358999999999999999 9999999999
Q ss_pred hhhccCCCCCCchHHHHHHHHCCCeEEeeccccccccc-----CCCCCCCCCCCCCCCCC-CCCCCCCChHHHHHHHhcC
Q 008170 97 DWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG-----ITGENKHYGTPVNPQMP-SHIPGGSSSGSAVAVAAQL 170 (575)
Q Consensus 97 ~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~-----~~~~n~~~G~~~NP~~~-~~~~GGSSgGsaaaVAag~ 170 (575)
.+.+ .++.+||++|+|||+|||||+|||||+||++. .+|+|++||+|+||||+ .++|||||||||+|||+|+
T Consensus 162 ~l~~--~~~~~DA~vV~rLr~AGAiilGKtnm~E~a~~~~~~~~~g~s~~~G~t~NP~~~~~~~pGGSSsGSAaAVAag~ 239 (536)
T PRK06707 162 VLKD--WIADQDATIVKQLKEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYGPIKFDTSGSSSGSATVVAADF 239 (536)
T ss_pred hhcc--CCCCCChHHHHHHHHCCCEEEEecCchhhhccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCchHHHHHhCCC
Confidence 9975 56789999999999999999999999999953 57889999999999998 6899999999999999999
Q ss_pred CceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc--------
Q 008170 171 VDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-------- 242 (575)
Q Consensus 171 ~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-------- 242 (575)
+++|||||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+|.|++.+++++.+.+..+.
T Consensus 240 ~~~aiGtDtgGSIr~PAs~~GvvGlKPT~G~vs~~Gv~p~s~slDt~Gp~artV~D~a~~l~~~~g~d~~d~~~~~~~~~ 319 (536)
T PRK06707 240 APLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMARTVKDAATLFNAMIGYDEKDVMTEKVKDK 319 (536)
T ss_pred CceEEecCCCCcccccHHHcCeEEEeCCCCcccCCCCcCcccccCeecCeeCCHHHHHHHHHHHcCCCCCcccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999886543211
Q ss_pred -------------ccCceEEeccchhhhcCCCchHHHHH-HHHHHHHHhCCC--CCccccccchhhccCcchHHhhhccC
Q 008170 243 -------------RRARRLIFADDIFQLSKVPKLKTIHV-ISKAIESLSGYQ--NPEHMNVGQYIASNVPSLKGLRAQST 306 (575)
Q Consensus 243 -------------~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~a~~~l~g~~--~~~~~~~~~~v~~~~p~l~~~~~~~~ 306 (575)
..+.|+++..+.. ..+++.++ ++++++.|...+ +++.+ .+|....
T Consensus 320 ~~~~~~~~l~~~~l~~~rigv~~~~~-----~~~~~~~a~~~~a~~~L~~~Ga~iv~~~--------~l~~~~~------ 380 (536)
T PRK06707 320 ERIDYTKDLSIDGLKGKKIGLLFSVD-----QQDENRKAVAEKIRKDLQDAGAILTDYI--------QLNNGGV------ 380 (536)
T ss_pred CCcchhhhccccCCCCCEEEEECCcC-----CCHHHHHHHHHHHHHHHHHcCCEEEecc--------CCchhhH------
Confidence 1234555543321 23455555 477777776333 21101 1121000
Q ss_pred CCCCchhHHHHHHHHHHHHHhhhhhhhHHHHHHHcCC----------CC-CHHHHHHHHHHhcC---------CHHH-HH
Q 008170 307 SPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKP----------RL-GYNVFERVLEAINT---------TQDN-IK 365 (575)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~----------~l-~~~~~~~l~~~~~~---------s~~~-~~ 365 (575)
.. ..+..+|+...+..|+..... .+ .+.++.++..+..+ +.++ +.
T Consensus 381 ------~~--------~~~~~~e~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 446 (536)
T PRK06707 381 ------DN--------LQTLEYEFKHNVNDYFSQQKNVPVKSLEEIIAFNKKDSKRRIKYGQTLIEASEKSAITKDEFEK 446 (536)
T ss_pred ------HH--------HHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHhcCHHHHHHHHccchhhhhhhhcccccHHHHH
Confidence 00 001112333333333211100 02 24455555444322 1223 34
Q ss_pred HHHHHHHHHHHHHHHHhC--CCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCccccccccc-CCCCcc
Q 008170 366 ILYKVRNEMRAALQRLLK--DDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPIS 442 (575)
Q Consensus 366 ~a~~~r~~~~~~~~~~~~--~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvG 442 (575)
.+++.|+.+++.++++|+ ++|+||+|.. ..|.++|++|+|+||||+|+. +|+|+|
T Consensus 447 ~~~~~r~~~~~~~~~~~~~~~~Dall~p~~----------------------~~t~~an~aG~PaitvP~G~~~~GlP~G 504 (536)
T PRK06707 447 VVQTSQENAKKELDRYLVEKGLDALVMINN----------------------EEVLLSAVAGYPELAVPAGYDNNGEPVG 504 (536)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEEEecCC----------------------CcchhhHhcCCCeEEEecccCCCCCCeE
Confidence 456778888999999998 8999999731 025678999999999999987 899999
Q ss_pred cccccccCCchhHHhHHHHHHHHh
Q 008170 443 ISFITYHGGDKFLLDTVLDLYDSL 466 (575)
Q Consensus 443 lqivg~~~~d~~ll~~a~~~~~~~ 466 (575)
|||+|++|+|..||++++++|+..
T Consensus 505 lqlig~~~~e~~LL~~A~~~E~~~ 528 (536)
T PRK06707 505 AVFVGKQFGEKELFNIGYAYEQQS 528 (536)
T ss_pred EEEECCCCChHHHHHHHHHHHHhC
Confidence 999999999999999999998854
No 30
>PRK06565 amidase; Validated
Probab=100.00 E-value=2.2e-75 Score=613.11 Aligned_cols=431 Identities=20% Similarity=0.207 Sum_probs=298.5
Q ss_pred chhHHHHHHHHhhcccccCC-----CCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCCccccCC
Q 008170 27 GFVVLAETLRRRRNPKLNGR-----VDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFG 94 (575)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G~~tt~G 94 (575)
+.+|++|+++++++||.+.| +.+|||+..+++ ++++|+ .+..+||||||||+|||||+++|++||+|
T Consensus 19 g~~t~~elv~a~l~ri~~~~~~~~~~~lna~~~~~~~-Al~~A~~~D~~~~~g~~~gpL~GIPi~vKD~~~v~G~~TT~G 97 (566)
T PRK06565 19 GRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNPD-ALKEAEASDARRARGETLGPLDGIPYTAKDSYLVKGLTAASG 97 (566)
T ss_pred CCCCHHHHHHHHHHHHHHhCccccCcceEEEEecCHH-HHHHHHHHHHHHhcCCCCCCCCCCEEEEecccccCCCCcccc
Confidence 55999999999999999999 689999987654 444332 34457999999999999999999999999
Q ss_pred ChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCC----CCCCCChHHHHHHHhcC
Q 008170 95 SPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSH----IPGGSSSGSAVAVAAQL 170 (575)
Q Consensus 95 s~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~----~~GGSSgGsaaaVAag~ 170 (575)
|+.|.+ .++.+||++|+|||+||||++||||||||+++.++ |.+||+|+||||+.| +|||||||||++||+|+
T Consensus 98 s~~l~~--~~~~~DA~vV~rLr~AGAIilGKTnm~E~a~g~~~-~~~~G~t~NP~n~~~~~~~~pGGSSgGsAaAVAag~ 174 (566)
T PRK06565 98 SPAFKD--LVAQRDAFTIERLRAAGAICLGKTNMPPMANGGMQ-RGVYGRAESPYNAAYLTAPFASGSSNGAGTATAASF 174 (566)
T ss_pred cHhhcC--CCCCCCHHHHHHHHHCCCEEEEecccchhhhCCCC-CCCCCCcCCCcCcccCcCCCCCCCCccHHHHHhCCC
Confidence 999975 57889999999999999999999999999998876 679999999999999 59999999999999999
Q ss_pred CceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc--------
Q 008170 171 VDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-------- 242 (575)
Q Consensus 171 ~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-------- 242 (575)
+++++|||||||||+||+||||||||||+|+||+.|++|+++++|++|||+|+++|++.+++++.+.+..+.
T Consensus 175 ~~~alGtDtgGSIR~PAa~~GivG~KPT~G~vs~~Gv~p~~~s~D~vGp~aRsV~D~a~~l~vl~g~D~~d~~~~~~~~~ 254 (566)
T PRK06565 175 SAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTMADLLEVLDVIVADDPDTRGDLWRLQP 254 (566)
T ss_pred CcceeecCCCCchhhhHHHcCeeEEeCCCCccCCCCcccccCCCCeecceeCCHHHHHHHHHHhcCCCcccccchhhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999886432110
Q ss_pred ------------------------ccCceEEeccchhhhcC------------------CCchHHHHHHHHHHHHHhCCC
Q 008170 243 ------------------------RRARRLIFADDIFQLSK------------------VPKLKTIHVISKAIESLSGYQ 280 (575)
Q Consensus 243 ------------------------~~~~~l~~~~~~~~~~~------------------~~~~~~~~~~~~a~~~l~g~~ 280 (575)
..+.|++++..++.... ..++++.+.++++++.|+..+
T Consensus 255 ~~~~p~~~~~~~~~y~~~~~~~~~l~g~RIGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~L~~~G 334 (566)
T PRK06565 255 WVPIPKASEVRPASYLALAAGADALKGKRFGVPRMYINADPDAGTSENPGIGGPTGQRIHTRPSVIDLWEAARRALEAAG 334 (566)
T ss_pred cccCccccccCccchhhhhccccCCCCCEEEEEChhhccccccccccccccccccccccCCCHHHHHHHHHHHHHHHHCC
Confidence 12345666554331100 013578999999999997444
Q ss_pred C-Cccccccc--hhhccCcchHHhhhccCCCCCchhHHHHH---------HHHHHHHHhhh--hhhhHHHHHHH--cC--
Q 008170 281 N-PEHMNVGQ--YIASNVPSLKGLRAQSTSPENGTATLKAL---------SSVMLSLQRYE--FKTIYEEWVKS--AK-- 342 (575)
Q Consensus 281 ~-~~~~~~~~--~v~~~~p~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~e--~~~~~~~~~~~--~~-- 342 (575)
. |+++++.. .++...+.... ..+......+.. ...-..+.... -...+.+.... ..
T Consensus 335 a~vv~v~~p~~~~~e~~~~~~~~------~~~~~~~~~~~~~~e~~~~~~~~~~~yL~~~~~~~~~sl~di~~~~~~~~~ 408 (566)
T PRK06565 335 AEVIEVDFPLVSNCEGDRPGAPT------VFNRGLVSPEFLHDELWELSGWAFDDFLRANGDPKLNRLADVDGPQIFPHD 408 (566)
T ss_pred CEEEEeecCCccccccccccccc------cccccccchhhhhccccchhHHHHHHHHHhcCCCCCCCHHHhhhhhcccCc
Confidence 3 22223221 01110000000 000000000000 00000010000 00011111110 00
Q ss_pred CCCCH----HHHH----HHH--HHhcCC---HHHHHHHHHHHHHHHH-HHHHHhC--CCCEEEecCCCCCCCcCCccccc
Q 008170 343 PRLGY----NVFE----RVL--EAINTT---QDNIKILYKVRNEMRA-ALQRLLK--DDKILVIPTVSDPPLKLNTKKTY 406 (575)
Q Consensus 343 ~~l~~----~~~~----~l~--~~~~~s---~~~~~~a~~~r~~~~~-~~~~~~~--~~DvLl~Pt~~~~ap~~~~~~~~ 406 (575)
+..-+ .+.. ..+ .....+ ..+|.+.++.++..++ .++++|+ +.|+||+|+.+..+|..++....
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~lDalv~P~~~~~~~~~~~~~~~ 488 (566)
T PRK06565 409 PGTLPNREGDLAAGMDEYVNMAKRGLKSWDQIPTLPDGLRGLEKTRKLDLEDWMDGLGLDAVLFPTVADVGPADADVNPA 488 (566)
T ss_pred ccccccchhhhhhhHHHHHHHhhcCCCChhhccchHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCccccccccch
Confidence 00001 1100 011 001111 2234455555555554 6777876 56899999999998877654322
Q ss_pred chhh--Hh-hhhcccccc-ccCCCCccccccccc--CCCCcccccccccCCchhHHhHHHHHHHHhh
Q 008170 407 SAEF--HD-RTLVLSSIG-SMSGCCQVAIPIGKY--NEHPISISFITYHGGDKFLLDTVLDLYDSLQ 467 (575)
Q Consensus 407 ~~~~--~~-~~~~~t~~~-nl~G~PaisvP~G~~--~GlPvGlqivg~~~~d~~ll~~a~~~~~~~~ 467 (575)
.... ++ .+...+..+ +++|+|+||||+|+. .|||+||+|+|++|+|..||++|.++|+...
T Consensus 489 ~~~~~~~~g~~~~ng~~a~~~~G~P~vtVP~G~~~~~G~PvGl~~~G~a~~e~~Ll~~A~a~E~~~~ 555 (566)
T PRK06565 489 SADIAWSNGVWVANGNLAIRHLGVPTVTVPMGVMADIGMPVGLTFAGRAYDDNALLRFAAAFEATGS 555 (566)
T ss_pred hhhhccccCcccccchhhHHhcCCCeeEeeccccCCCCCCeeEEeecCCcchHHHHHHHHHHHHHhc
Confidence 1111 11 112334444 899999999999986 7999999999999999999999999998554
No 31
>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.1e-71 Score=561.60 Aligned_cols=414 Identities=29% Similarity=0.396 Sum_probs=297.4
Q ss_pred chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCC-------CCCCCCCCCCCceEEeecccccCCccc-cCCChhh
Q 008170 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQP-------PPPAARQPLAGLKFAIKDVFDVKGYVT-GFGSPDW 98 (575)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a-------~~~~~~gpL~Gvpi~vKD~~~~~G~~t-t~Gs~~~ 98 (575)
+.+++.++++.+++++.+.++..+.+....++. +.++ +.+...+||+|+||+|||||+++|++| ||+|..+
T Consensus 30 ~~l~~~~~ie~~l~~~~~~~~~~~~i~~~~~~~-~~~a~~~~~~~~~~~~~~~L~Gv~i~IKDnf~tk~~~t~t~~S~~l 108 (506)
T KOG1211|consen 30 GLLTSKRIIESYLERINKWKPLNAKITVINEEA-LKQAEEVTRRRKNGMEKGPLQGVPIAIKDNFDTKDKPTTTAASWML 108 (506)
T ss_pred cccchHHHHHHHHHHHhhcccccceeeeccHHH-HHHhhhccccccCCCcCCCcCCceEEEeeceecCCccCCchhhhhh
Confidence 458899999999999999888777776665432 2222 244678999999999999999999999 7777776
Q ss_pred hccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccC
Q 008170 99 KRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTD 178 (575)
Q Consensus 99 ~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtD 178 (575)
. +..++.||++|++||++||+|+|||||+||+|+..++|.+||+|+|||++.+.|||||||||+|||++++++|+|||
T Consensus 109 ~--~~~~p~dAtVV~~L~~aGaiilGKTnmdEfamg~~~~~s~~G~t~np~~~~~v~GGSS~GSA~aVaa~l~~~alGtD 186 (506)
T KOG1211|consen 109 E--HYNPPKDATVVKKLREAGAIILGKTNMDEFAMGSSGENSHYGTTRNPLSLWRVPGGSSSGSAAAVAAGLCDFALGTD 186 (506)
T ss_pred c--cCCCccccHHHHHHhhcCceEEccccHHHHhhccccccccCCccCCCCcccccCCCCcchhHHHHHhccchhhcccc
Confidence 5 36788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc----------------
Q 008170 179 TIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP---------------- 242 (575)
Q Consensus 179 tgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~---------------- 242 (575)
||||+|+||++|||+|||||+|++|+.|++|++.|+|++|||||++.|...+..++.+.+..+.
T Consensus 187 TgGSvR~PAa~~gvvG~KPT~G~~Sr~Gvip~~~SlD~vGi~a~tv~D~~~v~~~~~g~d~~d~~t~~~p~~~~~~~~~~ 266 (506)
T KOG1211|consen 187 TGGSVRVPAAYCGVVGFKPTYGRVSRFGVIPLSNSLDTVGIFARTVYDAVEVLGAIVGIDELDSTTLAQPAPFPIVLELI 266 (506)
T ss_pred CCCCccCcHHhcCccccccCcceecccccchhhhcccccchhhcccchhHHHhhhhcCCCccCcccccCCcccccchhhc
Confidence 9999999999999999999999999999999999999999999999999999888776543221
Q ss_pred ----ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHh--CCCCCccccccchhhccCcchHHhhhccCCCCCchhHHH
Q 008170 243 ----RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLS--GYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLK 316 (575)
Q Consensus 243 ----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~ 316 (575)
..+.+++++..+.... ....+...+++..++|. +..+ ... .+|........+. ..
T Consensus 267 ~~~~l~~~r~GIp~~~~~~~--~~~~v~~~~~~~~~~l~~~~~~~-~~~--------~lp~~~~~~~~~~--------~~ 327 (506)
T KOG1211|consen 267 GSMDLSGLRIGIPKERLVQG--LSSGVLSLWEELADLLGSLGAKV-NEV--------SLPTTINGLCGYS--------LS 327 (506)
T ss_pred ccccccccccCceeeccccc--ccHHHHHHHHHHHHHhhcccccc-eee--------ecchhhhcccccc--------cc
Confidence 1122344444433211 12456666666665554 2221 111 2233221111100 00
Q ss_pred HHHHHHHHHHhhh---------hhhhHHHHHHHcC-CCCCHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHH--
Q 008170 317 ALSSVMLSLQRYE---------FKTIYEEWVKSAK-PRLGYNVFERVLEAI-----NTTQDNIKILYKVRNEMRAALQ-- 379 (575)
Q Consensus 317 ~~~~~~~~l~~~e---------~~~~~~~~~~~~~-~~l~~~~~~~l~~~~-----~~s~~~~~~a~~~r~~~~~~~~-- 379 (575)
...++...+.++. +....+++++..+ ..++.++..++..+. ......+.++++.|+.....+.
T Consensus 328 s~~ea~s~laryd~~~~~~r~~~~~~~~~v~~~~rs~~~n~~v~~~i~~g~~~l~~~~~~~~f~~a~~~rr~i~~~~~~~ 407 (506)
T KOG1211|consen 328 SASEAASNLARYDGILYGHRRDFKVADEEVYALSRSFGFNFEVKGRILSGNYILAKENDQDYFEKALEVRRLIQEDFNRR 407 (506)
T ss_pred chhhhhhhHHHHHHHHhhcchhhhhccceeeeeccccccchhhcceeeccceehhhhhhHHHHHHHHHHHHHHHHhhhhc
Confidence 0011112222221 1112222222111 123344555544332 2233445677888888887777
Q ss_pred -HHhCCCCEEEecCCCCCCCcCCcccc-cchhhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHH
Q 008170 380 -RLLKDDKILVIPTVSDPPLKLNTKKT-YSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLL 456 (575)
Q Consensus 380 -~~~~~~DvLl~Pt~~~~ap~~~~~~~-~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll 456 (575)
..++++|+|++||.|. +....... ...........++.++|++|+|+|+||+|+. +|+|+|+|++|..++|..++
T Consensus 408 ~~~~~~vD~l~~pt~~~--~~~~~~~~~~~~~~~~~~~~~~~~anlaGlP~isiP~G~~~~g~P~glqi~g~~~~e~~~~ 485 (506)
T KOG1211|consen 408 KAALEGVDYLVTPTAPP--PLYREFEKETLFAVSTLDDIFTQPANLAGLPAISIPVGLKNGGLPIGLQIMGGAFAEPTLI 485 (506)
T ss_pred ccccccCCeeeccCCCC--cchhhhhhcccccccccccceeecccccCCCceEEeeeecCCCCceEEEeecccccchHHH
Confidence 6888999999999433 33222111 1111111223579999999999999999998 99999999999999999999
Q ss_pred hHHHHHHH
Q 008170 457 DTVLDLYD 464 (575)
Q Consensus 457 ~~a~~~~~ 464 (575)
.++.+++.
T Consensus 486 ~l~~~~~~ 493 (506)
T KOG1211|consen 486 DLALAIGQ 493 (506)
T ss_pred HHHHhhcc
Confidence 99988766
No 32
>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-65 Score=527.27 Aligned_cols=428 Identities=20% Similarity=0.258 Sum_probs=301.6
Q ss_pred HHHHHHhhch-----hHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCC-------CCCCCCCCCceEEeeccccc
Q 008170 19 VVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPP-------PAARQPLAGLKFAIKDVFDV 86 (575)
Q Consensus 19 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~-------~~~~gpL~Gvpi~vKD~~~~ 86 (575)
..|+++|++. ++++|++++|++|+.++|+.+||+++..++++..+++. ...++||+||||+|||+|.+
T Consensus 54 ~~~~~~L~~~L~~~e~~~~~vl~Ay~~Ra~~vn~~lNcV~~~i~e~~~~~a~~~d~~~~~~~~k~PL~GvP~SvKe~~~v 133 (560)
T KOG1212|consen 54 KLDATELAQALQSGELTSVEVLCAYCHRAIEVNQKLNCVVEFIFEAALQAAALDDEYTAPLYEKPPLYGVPFSVKESISV 133 (560)
T ss_pred hcCHHHHHHHHHhCcCcHHHHHHHHHHHHHHhccCcceeeeehhhHHHHHhhchhhhhchhcccCCceecceehhhheee
Confidence 3389999855 99999999999999999999999999988877665542 12568999999999999999
Q ss_pred CCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 008170 87 KGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAV 166 (575)
Q Consensus 87 ~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaV 166 (575)
+|+.+|+|..... ..++++|+.+|+.|+++|||++.+||.||.+|+..+.|+.||+|.||||.+|||||||||+||++
T Consensus 134 kg~d~T~G~~~~~--~~~a~~ds~~V~~lk~~GaIpf~~TnvPq~~ls~~tsn~v~G~T~NP~d~~rt~GGSSGGEaALi 211 (560)
T KOG1212|consen 134 KGYDSTAGLLART--NQPATTDSVIVEFLKKLGAIPFVLTNVPQSLLSYETSNPVYGTTKNPYDLSRTPGGSSGGEAALL 211 (560)
T ss_pred cCccccchhhhcc--CCCCccchHHHHHHHHcCCCceeecCCchhhhhhhhcCCCCCCCCChhhccCCCCCCchHHHHHH
Confidence 9999999987654 36889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCC----CCccccccccCHHHHHHHHHHHccCCCCCc
Q 008170 167 AAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQ----SLDTVGLLARNASILHRVGHVLLQLNAVEP 242 (575)
Q Consensus 167 Aag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~----~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~ 242 (575)
++|.++||||||+||||||||+|||++|+|||.+|+|..|+.|..+ .+-.+|||+|+++|+..++..+.+.+....
T Consensus 212 gaggS~lGiGsDigGSiRiPa~f~Gl~GlKPT~~r~~~~G~~~~~~g~~~~~~~~GPm~r~v~dl~~~L~~~i~~~~~~~ 291 (560)
T KOG1212|consen 212 GAGGSLLGIGSDIGGSIRIPAAFCGLFGLKPTPGRVSVKGHHPSVPGRETIMLVIGPMTRDVEDLVLLLRLMIGDSGPKL 291 (560)
T ss_pred hCCcceeccccccCCceeechhhccccccCCCCCeeeecCcCCCCCcccccccccCcccccHHHHHHHHHHhcCCccccc
Confidence 9999999999999999999999999999999999999999887644 345789999999999998887776431111
Q ss_pred c-----------------cCceEEec-cchhhhcCCCchHHHHHHHHHHHHHh--CCCCCccccccchhhccCcchHHhh
Q 008170 243 R-----------------RARRLIFA-DDIFQLSKVPKLKTIHVISKAIESLS--GYQNPEHMNVGQYIASNVPSLKGLR 302 (575)
Q Consensus 243 ~-----------------~~~~l~~~-~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~v~~~~p~l~~~~ 302 (575)
. ++.++.+. .|. ...+.+.+.+++....+.++ |+.+ +.. .+|.+++..
T Consensus 292 ~~p~~~p~~~~~~~y~~~~~~~ig~~~~dg---~~~~~pa~~RAv~~~~~~l~~~g~~~-~~f--------~~~~~~~~~ 359 (560)
T KOG1212|consen 292 LDPYPVPVKFMEVFYKSSDKLVIGYYVDDG---FFDPSPAMQRAVQETIDLLEKAGHEV-VPF--------DLPDLKHVA 359 (560)
T ss_pred cCCCCCCchhhhhhhhccCCccceEEecCC---CCCcCHHHHHHHHHHHHHHHhcCcce-eEe--------cCCcchHHH
Confidence 1 11122221 121 12345677777777766665 3332 111 223332211
Q ss_pred hccCCCCCchhHHHHHHHHHHHHHh----hh---hhhhHHHHHHHcCCCCCHHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 008170 303 AQSTSPENGTATLKALSSVMLSLQR----YE---FKTIYEEWVKSAKPRLGYNVFE--RVLEAINTTQDNIKILYKVRNE 373 (575)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~l~~----~e---~~~~~~~~~~~~~~~l~~~~~~--~l~~~~~~s~~~~~~a~~~r~~ 373 (575)
+.+.... ......+.+....... .. +..-...++... +.....- .+.........+..+.+..++.
T Consensus 360 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---l~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~ 434 (560)
T KOG1212|consen 360 DMFFRVM--PDDGDYISEMYLLDIGDPTLNLFVKFVELPKVFLGRS---LHSYIVLPFCIMDAKNSDTAELRQNYEDIES 434 (560)
T ss_pred HHHHHHc--ccccchhhHHhhcccCccccchheeeeeccHHHHhhh---hhhhHhHHHHHHhhcccchHHHHHHHHHHHH
Confidence 1110000 0000000000000000 00 000000000000 0000000 1111222233344444445555
Q ss_pred HHHHHHH--HhCCCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCcccccccc----------------
Q 008170 374 MRAALQR--LLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGK---------------- 435 (575)
Q Consensus 374 ~~~~~~~--~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~---------------- 435 (575)
++.++.. ...+.||||+|+.|++||+|+.... ....+.||.+||++|+||.+||++.
T Consensus 435 yrlk~~~~~~~~~~dVll~Ps~~~pA~~h~~P~~-----~~~~~~Yt~LfN~Ld~Pag~vpvt~v~~~d~~~~~~~~~D~ 509 (560)
T KOG1212|consen 435 YRLKFILYWLLGKDDVLICPSFPTPAPPHNYPLL-----LVNGFSYTGLFNVLDFPAGVVPVTTVTQKDEKEEEYPMNDK 509 (560)
T ss_pred HHHHHHHHHHcCCCCEEEeCCCCCCCCcCCCchh-----hccchhHHHHHHhccCCcccccccccchhhhcccccccccH
Confidence 5544443 4568999999999999999985321 1123578999999999977777652
Q ss_pred ----------c-CCCCcccccccccCCchhHHhHHHHHHHHhhhhh
Q 008170 436 ----------Y-NEHPISISFITYHGGDKFLLDTVLDLYDSLQEQV 470 (575)
Q Consensus 436 ----------~-~GlPvGlqivg~~~~d~~ll~~a~~~~~~~~~~a 470 (575)
. .|||+|||+|+.+++|+.+|++++.+|+.+..+.
T Consensus 510 ~~~~~~~g~~~s~GlPigVQVVa~p~~delcL~va~~lE~~~gg~~ 555 (560)
T KOG1212|consen 510 WATKVPKGSLDSRGLPIGVQVVANPNQDELCLAVARELERKFGGWV 555 (560)
T ss_pred HHHhCcccccCCCCCceeEEEecCCCchHHHHHHHHHHHHHhCCcc
Confidence 2 6899999999999999999999999999887653
No 33
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=5.4e-14 Score=133.90 Aligned_cols=91 Identities=37% Similarity=0.575 Sum_probs=82.7
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH---
Q 008170 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARV--- 560 (575)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~--- 560 (575)
++...++.++++||.+++.++|++|+.+|++||+++|+++..|+|||.+|.++|+|+.|++||+.+|++||.+.+++
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999988654
Q ss_pred HHHHHHHHHhhhhh
Q 008170 561 GYVDCSMLIYLLCI 574 (575)
Q Consensus 561 ~~~~~~l~~~~~~i 574 (575)
|.++.++|+|..|+
T Consensus 156 G~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 156 GLAYLALGKYEEAI 169 (304)
T ss_pred HHHHHccCcHHHHH
Confidence 55555667777765
No 34
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.30 E-value=8.1e-12 Score=96.35 Aligned_cols=67 Identities=31% Similarity=0.550 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCc
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-CFQQAEEDCSKTISLDK 554 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~-~~~~Ai~~~~~al~l~P 554 (575)
++..|.++|..++++|+|++|+..|+++|+++|+++.+|+++|.+|.+++ ++++|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 47899999999999999999999999999999999999999999999999 79999999999999998
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=2.2e-11 Score=122.30 Aligned_cols=89 Identities=31% Similarity=0.554 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~~ 562 (575)
.+.+..++++||.+|++|+|++||.+|++||+++|+.+..|.||+.||..+|+|++.++||.++|+++|++.+ +++.
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRAS 191 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 4568889999999999999999999999999999999999999999999999999999999999999999984 5666
Q ss_pred HHHHHHHhhhhh
Q 008170 563 VDCSMLIYLLCI 574 (575)
Q Consensus 563 ~~~~l~~~~~~i 574 (575)
.+..+|++..|+
T Consensus 192 A~E~lg~~~eal 203 (606)
T KOG0547|consen 192 AHEQLGKFDEAL 203 (606)
T ss_pred HHHhhccHHHHH
Confidence 778888888876
No 36
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=7.9e-11 Score=120.04 Aligned_cols=90 Identities=40% Similarity=0.517 Sum_probs=83.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG 561 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~ 561 (575)
+|+.+...+++||.+|+.|+|..|+..|++||+.+|+++.+|.|||.||.+++++..|++||+++++++|++. .+.|
T Consensus 354 ~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg 433 (539)
T KOG0548|consen 354 NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKG 433 (539)
T ss_pred ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 4677888999999999999999999999999999999999999999999999999999999999999999988 3567
Q ss_pred HHHHHHHHhhhhh
Q 008170 562 YVDCSMLIYLLCI 574 (575)
Q Consensus 562 ~~~~~l~~~~~~i 574 (575)
.++..+.+|..|+
T Consensus 434 ~al~~mk~ydkAl 446 (539)
T KOG0548|consen 434 AALRAMKEYDKAL 446 (539)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888988775
No 37
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=1.6e-09 Score=97.09 Aligned_cols=89 Identities=34% Similarity=0.480 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH--
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA-- 558 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~-- 558 (575)
...+..++..||.+|+.|+|++|...|+.||++.|.. ..+|.|||.|++++++++.||.+|.++|+|+|.+.+
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 5678899999999999999999999999999999876 578999999999999999999999999999998874
Q ss_pred -HHHHHHHHHHHhhhhh
Q 008170 559 -RVGYVDCSMLIYLLCI 574 (575)
Q Consensus 559 -~~~~~~~~l~~~~~~i 574 (575)
+++.++..+-+|.-||
T Consensus 172 ~RRAeayek~ek~eeal 188 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEAL 188 (271)
T ss_pred HHHHHHHHhhhhHHHHH
Confidence 4455666666665554
No 38
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.01 E-value=1.3e-09 Score=82.91 Aligned_cols=65 Identities=12% Similarity=0.225 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 493 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
+++|..++++|+|++|+..|+++++.+|+++.+++.+|.++.++|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999875
No 39
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.01 E-value=3e-09 Score=94.83 Aligned_cols=82 Identities=12% Similarity=0.067 Sum_probs=73.5
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVD 564 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~ 564 (575)
+|.....|.++|.++.+.|+|++|+..|+++++++|+++.+++++|.|+..+|++++|+..|+++++++|+++..+....
T Consensus 54 ~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 54 QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 36678999999999999999999999999999999999999999999999999999999999999999999885444444
Q ss_pred HH
Q 008170 565 CS 566 (575)
Q Consensus 565 ~~ 566 (575)
..
T Consensus 134 ~~ 135 (144)
T PRK15359 134 NA 135 (144)
T ss_pred HH
Confidence 33
No 40
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.3e-09 Score=107.87 Aligned_cols=91 Identities=27% Similarity=0.449 Sum_probs=82.9
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--
Q 008170 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR-- 557 (575)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~-- 557 (575)
..++..+.++++||.+|++|+|..|.++|+++|.++|++ +.+|.|||.++.++|+..+|+.||+.++++|+.+.
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 467889999999999999999999999999999999986 78899999999999999999999999999999877
Q ss_pred -HHHHHHHHHHHHhhhhh
Q 008170 558 -ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 558 -~~~~~~~~~l~~~~~~i 574 (575)
..++.++..+++|-.|+
T Consensus 324 ll~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAV 341 (486)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 46788888888886654
No 41
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.95 E-value=3.8e-09 Score=94.17 Aligned_cols=83 Identities=17% Similarity=0.059 Sum_probs=76.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHH
Q 008170 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSML 568 (575)
Q Consensus 492 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~ 568 (575)
+..+|..+++.|+|++|+..|++++.++|++..+|+++|.++.++|++++|+..|+++++++|+++ ..+|.++..+|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 667899999999999999999999999999999999999999999999999999999999999987 56777777778
Q ss_pred Hhhhhh
Q 008170 569 IYLLCI 574 (575)
Q Consensus 569 ~~~~~i 574 (575)
++..|+
T Consensus 107 ~~~eAi 112 (144)
T PRK15359 107 EPGLAR 112 (144)
T ss_pred CHHHHH
Confidence 887765
No 42
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.93 E-value=8.2e-09 Score=90.88 Aligned_cols=88 Identities=7% Similarity=-0.037 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
++..+.++..|..+++.|++++|...|+-...++|.++..|+|+|.|+..+|+|++|+..|.+++.++|+++ ...|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 567788888888888888888888888888888888888888888888888888888888888888888887 45666
Q ss_pred HHHHHHHhhhh
Q 008170 563 VDCSMLIYLLC 573 (575)
Q Consensus 563 ~~~~l~~~~~~ 573 (575)
++..+|+...|
T Consensus 112 c~L~lG~~~~A 122 (157)
T PRK15363 112 CYLACDNVCYA 122 (157)
T ss_pred HHHHcCCHHHH
Confidence 66666665544
No 43
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.91 E-value=2.2e-09 Score=103.54 Aligned_cols=70 Identities=41% Similarity=0.619 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRAR 559 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~ 559 (575)
..++++||.||++|.|++||+||++++..+|.++..+.||+.+|+++++|..|..||+.|+.||-.+.++
T Consensus 98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KA 167 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKA 167 (536)
T ss_pred HHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence 3488999999999999999999999999999999999999999999999999999999999999876643
No 44
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.88 E-value=1e-08 Score=105.65 Aligned_cols=73 Identities=25% Similarity=0.289 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
|.....|.++|.++++.|+|++|+..++++++++|+++.+|+++|.+|+.+|+|++|+.+|+++++++|++..
T Consensus 33 P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 33 PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSR 105 (356)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 3344455555555555555555555555555555555555555555555555555555555555555555553
No 45
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=4.9e-09 Score=107.17 Aligned_cols=86 Identities=38% Similarity=0.513 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVGYVDC 565 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~~~~~ 565 (575)
+..++++||.+|..|+|+.|+.+|++||.++|.+..+|.||+.+|.++++|++|++|..++++++|+|++ .+|..+.
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF 81 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999999994 5666677
Q ss_pred HHHHhhhhh
Q 008170 566 SMLIYLLCI 574 (575)
Q Consensus 566 ~l~~~~~~i 574 (575)
.+|+|..|+
T Consensus 82 ~lg~~~eA~ 90 (539)
T KOG0548|consen 82 GLGDYEEAI 90 (539)
T ss_pred hcccHHHHH
Confidence 788988776
No 46
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.82 E-value=1.6e-08 Score=103.08 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=68.0
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY---YSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 482 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~---~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
...+|+++..|.++|+.|++.|+|++|+..|+++|+++|++..+ |+|+|.||.++|++++|+.++++++++
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999999999865 999999999999999999999999998
No 47
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.82 E-value=3.1e-08 Score=99.62 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
|+.+..|.++|..+.+.|+|++|+..|+++++++|++..+|+++|.+++..|++++|+++++++++++|+++
T Consensus 95 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 95 PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 344555555555555555555555555555555555555555555555555555555555555555555554
No 48
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=9.9e-09 Score=94.67 Aligned_cols=82 Identities=35% Similarity=0.597 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDC 565 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~~ 565 (575)
...+..++++||.+|...+|..|+.+|.+||.++|..+..|.||+.||+++++|+.+..||.++++++||..+.++.++.
T Consensus 7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~ 86 (284)
T KOG4642|consen 7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQ 86 (284)
T ss_pred chHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999998876655554
Q ss_pred HH
Q 008170 566 SM 567 (575)
Q Consensus 566 ~l 567 (575)
.+
T Consensus 87 ~~ 88 (284)
T KOG4642|consen 87 WL 88 (284)
T ss_pred HH
Confidence 43
No 49
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.8e-08 Score=95.00 Aligned_cols=89 Identities=31% Similarity=0.422 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVG 561 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~ 561 (575)
.+.++-+++.||.||+.++|..|+.+|++.|+..-.+ +.+|+|||.|.+.+|+|..|+.||.++++++|.+.+++.
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~ 157 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYI 157 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhh
Confidence 4579999999999999999999999999999885433 778999999999999999999999999999999986544
Q ss_pred ---HHHHHHHHhhhhh
Q 008170 562 ---YVDCSMLIYLLCI 574 (575)
Q Consensus 562 ---~~~~~l~~~~~~i 574 (575)
.+...+.+|..|+
T Consensus 158 R~Akc~~eLe~~~~a~ 173 (390)
T KOG0551|consen 158 RGAKCLLELERFAEAV 173 (390)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4555566665554
No 50
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.76 E-value=5.2e-08 Score=85.74 Aligned_cols=87 Identities=10% Similarity=0.085 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYV 563 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~ 563 (575)
++......+|..+++.|++++|++.|+++++.+|++..+++++|.++.+++++++|+..++++++++|++. ..++.+
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC 94 (135)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 33444455555555555555555555555555555555555555555555555555555555555555443 233444
Q ss_pred HHHHHHhhhh
Q 008170 564 DCSMLIYLLC 573 (575)
Q Consensus 564 ~~~l~~~~~~ 573 (575)
+...+++..|
T Consensus 95 ~~~~g~~~~A 104 (135)
T TIGR02552 95 LLALGEPESA 104 (135)
T ss_pred HHHcCCHHHH
Confidence 4444444433
No 51
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.74 E-value=5.5e-08 Score=91.50 Aligned_cols=89 Identities=21% Similarity=0.221 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCcccH---HH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAY-LELGC--FQQAEEDCSKTISLDKKVR---AR 559 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~-~~l~~--~~~Ai~~~~~al~l~P~~~---~~ 559 (575)
|++.+.|..+|..+...|++++|+..|+++++++|+++.++.++|.++ ...|+ +++|+..++++++++|++. ..
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~ 149 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALML 149 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHH
Confidence 677889999999999999999999999999999999999999999975 67777 5999999999999999888 45
Q ss_pred HHHHHHHHHHhhhhh
Q 008170 560 VGYVDCSMLIYLLCI 574 (575)
Q Consensus 560 ~~~~~~~l~~~~~~i 574 (575)
++..+...|+|..|+
T Consensus 150 LA~~~~~~g~~~~Ai 164 (198)
T PRK10370 150 LASDAFMQADYAQAI 164 (198)
T ss_pred HHHHHHHcCCHHHHH
Confidence 666677778887776
No 52
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.73 E-value=4.8e-08 Score=108.80 Aligned_cols=87 Identities=34% Similarity=0.486 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYV 563 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~ 563 (575)
+.+..++++|+.+++.|+|++|+..|+++|+++|+ +..|.|+|.||.++++|++|+++|+++++++|++. ..++.+
T Consensus 125 ~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a 203 (615)
T TIGR00990 125 KYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45778999999999999999999999999999996 77999999999999999999999999999999987 466777
Q ss_pred HHHHHHhhhhh
Q 008170 564 DCSMLIYLLCI 574 (575)
Q Consensus 564 ~~~l~~~~~~i 574 (575)
+..+++|..|+
T Consensus 204 ~~~lg~~~eA~ 214 (615)
T TIGR00990 204 YDGLGKYADAL 214 (615)
T ss_pred HHHcCCHHHHH
Confidence 78888887764
No 53
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.72 E-value=7.4e-08 Score=74.91 Aligned_cols=63 Identities=17% Similarity=0.357 Sum_probs=60.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 496 g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
.+.|+++++|++|++.++++++++|+++.+++.+|.++.++|++++|+++++++++++|++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 467899999999999999999999999999999999999999999999999999999998875
No 54
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=5.9e-08 Score=96.86 Aligned_cols=88 Identities=30% Similarity=0.380 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---------------SATYYSNRAAAYLELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~---------------~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~ 551 (575)
+.+...++.||.+|+.|+|..|...|.+|+..=.. -..++.|++.||+|+++|.+|+..|+++|.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 34556667777777777777777777777654211 134577777777777777777777777777
Q ss_pred hCcccHH---HHHHHHHHHHHhhhhh
Q 008170 552 LDKKVRA---RVGYVDCSMLIYLLCI 574 (575)
Q Consensus 552 l~P~~~~---~~~~~~~~l~~~~~~i 574 (575)
++|+|.+ ++|+++..+++|..|+
T Consensus 286 ~~~~N~KALyRrG~A~l~~~e~~~A~ 311 (397)
T KOG0543|consen 286 LDPNNVKALYRRGQALLALGEYDLAR 311 (397)
T ss_pred cCCCchhHHHHHHHHHHhhccHHHHH
Confidence 7777774 4445555566666654
No 55
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=7.4e-08 Score=92.41 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=73.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYV 563 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~ 563 (575)
+|+++..|-+++-+|.+.|+|+.|++.+..||.+||.+..+|..+|.+|+.+|+|++|++.|+|+|+++|+|...+-.+
T Consensus 111 ~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 111 DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 4778999999999999999999999999999999999999999999999999999999999999999999998433333
No 56
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.66 E-value=1.2e-07 Score=95.28 Aligned_cols=89 Identities=21% Similarity=0.123 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
...+..|+++|..+.+.|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++. ..+|.
T Consensus 61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 140 (296)
T PRK11189 61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140 (296)
T ss_pred HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456888999999999999999999999999999999999999999999999999999999999999999988 45566
Q ss_pred HHHHHHHhhhhh
Q 008170 563 VDCSMLIYLLCI 574 (575)
Q Consensus 563 ~~~~l~~~~~~i 574 (575)
++...++|..|+
T Consensus 141 ~l~~~g~~~eA~ 152 (296)
T PRK11189 141 ALYYGGRYELAQ 152 (296)
T ss_pred HHHHCCCHHHHH
Confidence 666667777765
No 57
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.61 E-value=7.6e-08 Score=93.17 Aligned_cols=92 Identities=21% Similarity=0.150 Sum_probs=84.8
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHH
Q 008170 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARV 560 (575)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~ 560 (575)
.++.+.+.+.+.|+.++..|+|.+|+..|..|++.+|++..+++.||.+|+.+|+-..|+.|++++|++.|++. ..+
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999987 467
Q ss_pred HHHHHHHHHhhhhhC
Q 008170 561 GYVDCSMLIYLLCIV 575 (575)
Q Consensus 561 ~~~~~~l~~~~~~i~ 575 (575)
|.+++-+|++..|.+
T Consensus 113 g~vllK~Gele~A~~ 127 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEA 127 (504)
T ss_pred chhhhhcccHHHHHH
Confidence 888888888877753
No 58
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.61 E-value=3e-07 Score=94.80 Aligned_cols=85 Identities=32% Similarity=0.479 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHH
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCS 566 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~ 566 (575)
..++.+|+.+|..|+|++|++.|+++|+++|+++.+|++||.+|+++|++++|+.+++++++++|++. ..+|.++..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999987 466777788
Q ss_pred HHHhhhhh
Q 008170 567 MLIYLLCI 574 (575)
Q Consensus 567 l~~~~~~i 574 (575)
+|+|..|+
T Consensus 83 lg~~~eA~ 90 (356)
T PLN03088 83 LEEYQTAK 90 (356)
T ss_pred hCCHHHHH
Confidence 88888775
No 59
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.60 E-value=3.1e-07 Score=84.82 Aligned_cols=90 Identities=17% Similarity=0.096 Sum_probs=81.6
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHH
Q 008170 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARV 560 (575)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~ 560 (575)
.....+.+..++|..|+++|++..|...+++||+.||++..+|.-|+.+|.++|+.+.|.+.|++|++++|++. .++
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence 33456778899999999999999999999999999999999999999999999999999999999999999987 577
Q ss_pred HHHHHHHHHhhhh
Q 008170 561 GYVDCSMLIYLLC 573 (575)
Q Consensus 561 ~~~~~~l~~~~~~ 573 (575)
|..++..|+|..+
T Consensus 110 G~FLC~qg~~~eA 122 (250)
T COG3063 110 GAFLCAQGRPEEA 122 (250)
T ss_pred hHHHHhCCChHHH
Confidence 8888887777655
No 60
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.60 E-value=3.7e-07 Score=80.49 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=66.7
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~ 553 (575)
+|.....|+++|.++-..|+|++||..|.+|+.++|+++..++|.|.|++++|+.++|.+.|+.++.+.
T Consensus 65 Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 65 DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 477899999999999999999999999999999999999999999999999999999999999999886
No 61
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.57 E-value=1.9e-07 Score=71.43 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=56.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 499 AFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 499 ~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
++++|+|++|++.|+++++.+|++..+++.++.||++.|++++|...+++++..+|++..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 478999999999999999999999999999999999999999999999999999999764
No 62
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.55 E-value=2.1e-07 Score=96.45 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=57.7
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVG 561 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~ 561 (575)
+|.+++.+.|+||.+..+|.+++|...|.++++..|..+.+++|+|.+|.++|++++|+.+|+++|+++|.... ++|
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmG 429 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMG 429 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcc
Confidence 35566666777777777777777777777777777777777777777777777777777777777777776552 344
Q ss_pred HHHHHHHHhhhh
Q 008170 562 YVDCSMLIYLLC 573 (575)
Q Consensus 562 ~~~~~l~~~~~~ 573 (575)
..+..+|+...|
T Consensus 430 nt~ke~g~v~~A 441 (966)
T KOG4626|consen 430 NTYKEMGDVSAA 441 (966)
T ss_pred hHHHHhhhHHHH
Confidence 444444444433
No 63
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.47 E-value=1.4e-06 Score=72.96 Aligned_cols=72 Identities=28% Similarity=0.284 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
-+.+..+.-+|..+-..|+.+.|++.|.++|.+.|..+.+|+||++++.-+++.++|++|+++++++.-+..
T Consensus 40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t 111 (175)
T KOG4555|consen 40 IKASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT 111 (175)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc
Confidence 456777888999999999999999999999999999999999999999999999999999999999965433
No 64
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.1e-06 Score=87.97 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
...+.|.+.++.+.++|.+|+...+++|+++|+|..++|.||.+++.+++|+.|+.||+++++++|+|..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka 326 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA 326 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence 3457899999999999999999999999999999999999999999999999999999999999999974
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=98.45 E-value=7.2e-07 Score=97.83 Aligned_cols=89 Identities=13% Similarity=0.010 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~~ 562 (575)
|+++..+..+|..+...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..++++++++|++.. .++.
T Consensus 335 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~ 414 (553)
T PRK12370 335 HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW 414 (553)
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 5678889999999999999999999999999999999999999999999999999999999999999998762 2333
Q ss_pred HHHHHHHhhhhh
Q 008170 563 VDCSMLIYLLCI 574 (575)
Q Consensus 563 ~~~~l~~~~~~i 574 (575)
.+...++|..|+
T Consensus 415 ~~~~~g~~eeA~ 426 (553)
T PRK12370 415 ITYYHTGIDDAI 426 (553)
T ss_pred HHHhccCHHHHH
Confidence 444456665553
No 66
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.45 E-value=1.9e-06 Score=69.10 Aligned_cols=84 Identities=31% Similarity=0.466 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHH
Q 008170 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSM 567 (575)
Q Consensus 491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l 567 (575)
.+.++|..++++|++++|+..++++++..|++..++++++.++...+++++|+..+++++++.|.+. ..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999988776 3556666666
Q ss_pred HHhhhhh
Q 008170 568 LIYLLCI 574 (575)
Q Consensus 568 ~~~~~~i 574 (575)
+++..|+
T Consensus 82 ~~~~~a~ 88 (100)
T cd00189 82 GKYEEAL 88 (100)
T ss_pred HhHHHHH
Confidence 7766553
No 67
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.44 E-value=9.2e-07 Score=83.43 Aligned_cols=88 Identities=19% Similarity=0.177 Sum_probs=75.9
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG 561 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~ 561 (575)
++++...+..+|...+++|+|.+|+..++++.+++|++..+|+.+|.+|.++|++++|...|.+++++.|+.+ .+++
T Consensus 96 ~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlg 175 (257)
T COG5010 96 YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLG 175 (257)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHH
Confidence 4566777777999999999999999999999999999999999999999999999999999999999999887 4566
Q ss_pred HHHHHHHHhhh
Q 008170 562 YVDCSMLIYLL 572 (575)
Q Consensus 562 ~~~~~l~~~~~ 572 (575)
+.+...|++.-
T Consensus 176 ms~~L~gd~~~ 186 (257)
T COG5010 176 MSLLLRGDLED 186 (257)
T ss_pred HHHHHcCCHHH
Confidence 66665566544
No 68
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.44 E-value=1.3e-07 Score=96.13 Aligned_cols=87 Identities=34% Similarity=0.458 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHHHH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVGYVD 564 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~~~~ 564 (575)
.+..++++++.+++.+.|+.|+..|++||+++|+++..+.||++++++.++|..|+.|+.++++++|.+.+ .+|...
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 36678899999999999999999999999999999999999999999999999999999999999998774 345556
Q ss_pred HHHHHhhhhh
Q 008170 565 CSMLIYLLCI 574 (575)
Q Consensus 565 ~~l~~~~~~i 574 (575)
..+++|+.|+
T Consensus 83 m~l~~~~~A~ 92 (476)
T KOG0376|consen 83 MALGEFKKAL 92 (476)
T ss_pred HhHHHHHHHH
Confidence 6667666654
No 69
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.44 E-value=1.5e-06 Score=76.35 Aligned_cols=73 Identities=18% Similarity=0.125 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
|.....+...|..++++|+|++|+..|+++++.+|++...++++|.++..+|++++|+..++++++++|++..
T Consensus 48 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 48 PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 4567899999999999999999999999999999999999999999999999999999999999999998874
No 70
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.43 E-value=1.5e-06 Score=74.15 Aligned_cols=69 Identities=14% Similarity=0.091 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
...++..|..+++.|+|++|+..|.+++..+|++ +.++++++.++.+++++++|+..++++++..|++.
T Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 4455666666666666666666666666666553 45566666666666666666666666666666654
No 71
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.43 E-value=7e-07 Score=70.39 Aligned_cols=68 Identities=19% Similarity=0.345 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-------p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~ 553 (575)
|..+..+.+.|..++.+|+|++|+..|++++++. |..+.+++++|.++..+|++++|+..+++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5678899999999999999999999999999762 2236789999999999999999999999999863
No 72
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.41 E-value=2.9e-06 Score=77.82 Aligned_cols=82 Identities=13% Similarity=0.079 Sum_probs=70.9
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH--
Q 008170 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA-- 558 (575)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~-- 558 (575)
...+.+..+...|..++.+|+|++|+..|++++.+.|+. +.+++++|.++.++|++++|+..|+++++++|.+..
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~ 109 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL 109 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 345678899999999999999999999999999997763 568999999999999999999999999999998773
Q ss_pred -HHHHHHH
Q 008170 559 -RVGYVDC 565 (575)
Q Consensus 559 -~~~~~~~ 565 (575)
.++.++.
T Consensus 110 ~~la~i~~ 117 (168)
T CHL00033 110 NNMAVICH 117 (168)
T ss_pred HHHHHHHH
Confidence 3444444
No 73
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=1e-06 Score=91.24 Aligned_cols=112 Identities=9% Similarity=0.079 Sum_probs=89.9
Q ss_pred cCCchhHHhHHHHHHHHhhhhhhhccCCCCCCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008170 449 HGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSN 528 (575)
Q Consensus 449 ~~~d~~ll~~a~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ 528 (575)
.-+...+..+...+.+...+... ..+++...-+|..|+-.|+|++|++||+.||+.+|++..+|+.
T Consensus 404 ~~~~~~l~~i~~~fLeaa~~~~~--------------~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNR 469 (579)
T KOG1125|consen 404 FLDSSHLAHIQELFLEAARQLPT--------------KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNR 469 (579)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCC--------------CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 33556677777666664443211 1346677789999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170 529 RAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 529 ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~~~i 574 (575)
+|..+..-.+.++||..|.+||+|.|++. .++|.....+|.|..|+
T Consensus 470 LGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 470 LGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred hhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH
Confidence 99999999999999999999999999988 45566666677776654
No 74
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.39 E-value=2.7e-06 Score=78.34 Aligned_cols=75 Identities=20% Similarity=0.246 Sum_probs=68.9
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
.++..+..++++|..+.+.|+|++|+.+|++++++.|+. ..++.++|.++.++|++++|+..++++++++|++..
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 457788899999999999999999999999999987754 578999999999999999999999999999998874
No 75
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.38 E-value=1.9e-06 Score=89.57 Aligned_cols=111 Identities=19% Similarity=0.123 Sum_probs=86.3
Q ss_pred cCCchhHHhHHHHHHHHhhhhhhhccCCCCCCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008170 449 HGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSN 528 (575)
Q Consensus 449 ~~~d~~ll~~a~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ 528 (575)
-+.++-++++|-..++...+ .+|.-.+++.|.+|++-..|+-.||.++|+++|.++|+++.+.+|
T Consensus 295 iYyeqG~ldlAI~~Ykral~---------------~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~N 359 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALE---------------LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNN 359 (966)
T ss_pred EEeccccHHHHHHHHHHHHh---------------cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHH
Confidence 34566677777665553322 135667788999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170 529 RAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 529 ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~~~i 574 (575)
+|.+|.+++++++|...|.++++..|+.. .+++.++...|++..||
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHH
Confidence 99999999999999999999999999876 34555555555555443
No 76
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.37 E-value=1.6e-06 Score=96.67 Aligned_cols=89 Identities=9% Similarity=0.038 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
|++...+..+|..++..|+|++|+..|+++++++|++...++++|.++.++|++++|+..++++++++|++. ..+|.
T Consensus 396 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~ 475 (615)
T TIGR00990 396 SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGE 475 (615)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 344566777777777777777777777777777777777777777777777777777777777777777665 34555
Q ss_pred HHHHHHHhhhhh
Q 008170 563 VDCSMLIYLLCI 574 (575)
Q Consensus 563 ~~~~l~~~~~~i 574 (575)
++..+|+|..|+
T Consensus 476 ~~~~~g~~~~A~ 487 (615)
T TIGR00990 476 LLLDQNKFDEAI 487 (615)
T ss_pred HHHHccCHHHHH
Confidence 566666665554
No 77
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=8.7e-07 Score=93.14 Aligned_cols=90 Identities=16% Similarity=0.092 Sum_probs=84.0
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG 561 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~ 561 (575)
++.+-.+|+-.|.+|.++++|+.|.-+|++|++++|.+..+....|..+.++|+.++|+..+++|+.+||.++ ..++
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 5788999999999999999999999999999999999999999999999999999999999999999999988 5678
Q ss_pred HHHHHHHHhhhhh
Q 008170 562 YVDCSMLIYLLCI 574 (575)
Q Consensus 562 ~~~~~l~~~~~~i 574 (575)
.++..+++|..|+
T Consensus 565 ~il~~~~~~~eal 577 (638)
T KOG1126|consen 565 SILFSLGRYVEAL 577 (638)
T ss_pred HHHHhhcchHHHH
Confidence 8888888888876
No 78
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.9e-06 Score=80.03 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=70.8
Q ss_pred CCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHH
Q 008170 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------------------NGTSATYYSNRAAAYLELGCFQQA 542 (575)
Q Consensus 481 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~------------------~p~~~~~~~~ra~~~~~l~~~~~A 542 (575)
+-++..+....+.++||.+|++|+|++|..+|..||.. +.....++.|.++|+++.++|.++
T Consensus 170 sddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yev 249 (329)
T KOG0545|consen 170 SDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEV 249 (329)
T ss_pred CchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHH
Confidence 34455677788999999999999999999999999832 223356799999999999999999
Q ss_pred HHHHHHHHHhCcccHHHHHHHH
Q 008170 543 EEDCSKTISLDKKVRARVGYVD 564 (575)
Q Consensus 543 i~~~~~al~l~P~~~~~~~~~~ 564 (575)
++.|...|..+|.|.+++++..
T Consensus 250 leh~seiL~~~~~nvKA~frRa 271 (329)
T KOG0545|consen 250 LEHCSEILRHHPGNVKAYFRRA 271 (329)
T ss_pred HHHHHHHHhcCCchHHHHHHHH
Confidence 9999999999999997665543
No 79
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=2.5e-06 Score=76.94 Aligned_cols=72 Identities=31% Similarity=0.408 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
...+..|.++|-++++.+.++.||..+++||+++|.+-.++..||.+|.++.+|++|+.||++.++++|...
T Consensus 131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 456788999999999999999999999999999999999999999999999999999999999999999866
No 80
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.32 E-value=5.9e-06 Score=78.93 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV 556 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~ 556 (575)
+..+.+.|..+++.|+|++|++.++++++.+|++..++..++.++..+|++++|++.++++++++|++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 98 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN 98 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 44444555555555555555555555555555555555555555555555555555555555554443
No 81
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.31 E-value=9.4e-07 Score=70.79 Aligned_cols=73 Identities=23% Similarity=0.348 Sum_probs=52.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170 501 KGKQWNKAVNYYSEAIKLNGT--SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 501 ~~g~~~~Ai~~~~~al~~~p~--~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~~~i 574 (575)
.+|+|++|+..|+++++.+|. +...++++|.||+++|+|++|+..+++ ++.++.+. ..+++++..+++|..||
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 367788888888888888874 466777788888888888888888887 66666554 44577777777777775
No 82
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.26 E-value=1.7e-05 Score=76.98 Aligned_cols=74 Identities=19% Similarity=0.185 Sum_probs=68.7
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA---TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~---~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
.+...+..++++|..+++.|+|++|+..|+++++.+|+++ .+++++|.++.+++++++|+..++++++.+|++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 4466788999999999999999999999999999999875 6889999999999999999999999999999766
No 83
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.23 E-value=4.7e-06 Score=95.97 Aligned_cols=85 Identities=13% Similarity=0.076 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDC 565 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~ 565 (575)
...+.+.|..+.+.|++++|+..|.++++++|+++.+++++|.++.++|++++|+..|+++++++|++. ..++.++.
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666666666666666666666666666666666655 34455555
Q ss_pred HHHHhhhh
Q 008170 566 SMLIYLLC 573 (575)
Q Consensus 566 ~l~~~~~~ 573 (575)
.+|++..|
T Consensus 689 ~lGd~~eA 696 (987)
T PRK09782 689 RLDDMAAT 696 (987)
T ss_pred HCCCHHHH
Confidence 55554444
No 84
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.3e-05 Score=77.64 Aligned_cols=118 Identities=14% Similarity=0.076 Sum_probs=94.5
Q ss_pred CcccccccccCCchhHHhHHHHHHHHhhhhhhhccCCCCCCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170 440 PISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519 (575)
Q Consensus 440 PvGlqivg~~~~d~~ll~~a~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~ 519 (575)
|+-.+..-++ ++..+-++...++.+++. +|++++.|.-+|..|+++|++..|...|.+|+++.
T Consensus 124 r~~~~~a~~~-~~~~~~~l~a~Le~~L~~----------------nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~ 186 (287)
T COG4235 124 RLADPLAQPP-AEQEMEALIARLETHLQQ----------------NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA 186 (287)
T ss_pred hhhcccccCC-CcccHHHHHHHHHHHHHh----------------CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC
Confidence 4444554444 445566666777776664 47889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcccHHHHHHH---HHHHHHhhhhh
Q 008170 520 GTSATYYSNRAAAYLELG---CFQQAEEDCSKTISLDKKVRARVGYV---DCSMLIYLLCI 574 (575)
Q Consensus 520 p~~~~~~~~ra~~~~~l~---~~~~Ai~~~~~al~l~P~~~~~~~~~---~~~l~~~~~~i 574 (575)
|+++.++...+.+++... .-.++...+++++++||++...++++ +...|+|..|+
T Consensus 187 g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~ 247 (287)
T COG4235 187 GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAA 247 (287)
T ss_pred CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHH
Confidence 999999999999998764 46889999999999999999654444 45567787765
No 85
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.19 E-value=9.5e-06 Score=76.34 Aligned_cols=75 Identities=17% Similarity=0.142 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Q 008170 486 IDASELLKEKGNAA-FKGKQ--WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARV 560 (575)
Q Consensus 486 ~~~a~~~~~~g~~~-~~~g~--~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~ 560 (575)
|++...+.+.|.++ ++.|+ +++|.+.++++++++|++..+++++|.+++++|+|++|+..++++++++|.+....
T Consensus 104 P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 104 GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 56788999999975 77787 59999999999999999999999999999999999999999999999999766433
No 86
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=4.3e-06 Score=84.88 Aligned_cols=68 Identities=24% Similarity=0.250 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
.|..++..|.++.+-++-...|++|.++||+++.+|+.||+.++-+++|++|+.||++++.|+|++..
T Consensus 362 lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~ 429 (606)
T KOG0547|consen 362 LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAY 429 (606)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhH
Confidence 37888888999999999999999999999999999999999999999999999999999999998874
No 87
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.18 E-value=5.9e-07 Score=87.45 Aligned_cols=87 Identities=23% Similarity=0.353 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYV 563 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~ 563 (575)
+++...+-++..++..|+++.||+.|+.+|+++|..+.+|.+|+.++++++++..|++||+.+++++|+.. +.+++.
T Consensus 112 eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A 191 (377)
T KOG1308|consen 112 DQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYA 191 (377)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHH
Confidence 44556677888899999999999999999999999999999999999999999999999999999999866 567777
Q ss_pred HHHHHHhhhh
Q 008170 564 DCSMLIYLLC 573 (575)
Q Consensus 564 ~~~l~~~~~~ 573 (575)
...+++|.++
T Consensus 192 ~rllg~~e~a 201 (377)
T KOG1308|consen 192 ERLLGNWEEA 201 (377)
T ss_pred HHHhhchHHH
Confidence 7777777654
No 88
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.18 E-value=6.6e-06 Score=91.19 Aligned_cols=88 Identities=11% Similarity=-0.076 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
|++..++.+.++.+.+++++++|+..++++++.+|+++.+++++|.++.++|+|++|+..|++++..+|++. ..++.
T Consensus 117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~ 196 (694)
T PRK15179 117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQ 196 (694)
T ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 667777788888888888888888888888888888888888888888888888888888888887777655 34555
Q ss_pred HHHHHHHhhhh
Q 008170 563 VDCSMLIYLLC 573 (575)
Q Consensus 563 ~~~~l~~~~~~ 573 (575)
++..+|+...|
T Consensus 197 ~l~~~G~~~~A 207 (694)
T PRK15179 197 SLTRRGALWRA 207 (694)
T ss_pred HHHHcCCHHHH
Confidence 55555555444
No 89
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.16 E-value=1.1e-05 Score=93.00 Aligned_cols=73 Identities=11% Similarity=-0.015 Sum_probs=70.2
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
+|++...+.+.|..+.+.|++++|+..|+++++++|+++.+++++|.++.++|++++|+..|+++++++|++.
T Consensus 639 ~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 639 EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence 4677889999999999999999999999999999999999999999999999999999999999999999886
No 90
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.15 E-value=8.4e-06 Score=90.37 Aligned_cols=91 Identities=3% Similarity=-0.201 Sum_probs=84.5
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG 561 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~ 561 (575)
.++.++.++++|....+.|+|++|...+..+++++|++..++.+++.++.+++++++|+..++++++.+|++. ..++
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 4677899999999999999999999999999999999999999999999999999999999999999999998 4677
Q ss_pred HHHHHHHHhhhhhC
Q 008170 562 YVDCSMLIYLLCIV 575 (575)
Q Consensus 562 ~~~~~l~~~~~~i~ 575 (575)
.++..+|+|..|++
T Consensus 162 ~~l~~~g~~~~A~~ 175 (694)
T PRK15179 162 KSWDEIGQSEQADA 175 (694)
T ss_pred HHHHHhcchHHHHH
Confidence 78888888888763
No 91
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=2.6e-06 Score=89.67 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------------------------------CCHHHHHHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG----------------------------------TSATYYSNRAA 531 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p----------------------------------~~~~~~~~ra~ 531 (575)
+..++.|-..||++--|++++.||.+|++|+++|| ++..+||.+|.
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~ 497 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGT 497 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhh
Confidence 44456777777777777777777777777776654 45678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170 532 AYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 532 ~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~~~i 574 (575)
+|+|+++++.|.-.|++|++++|.+. -..|..+..+++...||
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL 543 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKAL 543 (638)
T ss_pred heeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHH
Confidence 99999999999999999999999877 34566666666666665
No 92
>PRK12370 invasion protein regulator; Provisional
Probab=98.14 E-value=7.6e-06 Score=89.78 Aligned_cols=89 Identities=8% Similarity=-0.127 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170 486 IDASELLKEKGNAAF---------KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV 556 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~---------~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~ 556 (575)
|+.+..|...|.+++ ..+++++|+..++++++++|+++.++..+|.++..+|++++|+..|+++++++|++
T Consensus 292 P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~ 371 (553)
T PRK12370 292 PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS 371 (553)
T ss_pred CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 555777777777665 33558999999999999999999999999999999999999999999999999998
Q ss_pred HH---HHHHHHHHHHHhhhhh
Q 008170 557 RA---RVGYVDCSMLIYLLCI 574 (575)
Q Consensus 557 ~~---~~~~~~~~l~~~~~~i 574 (575)
.. .++.++...|++..|+
T Consensus 372 ~~a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 372 ADIKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred HHHHHHHHHHHHHCCCHHHHH
Confidence 84 4566666677777665
No 93
>PRK15331 chaperone protein SicA; Provisional
Probab=98.14 E-value=1.9e-05 Score=70.05 Aligned_cols=116 Identities=13% Similarity=0.013 Sum_probs=91.0
Q ss_pred chhHHhHHHHHHHHhhhhhhhccCCCCCCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008170 452 DKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAA 531 (575)
Q Consensus 452 d~~ll~~a~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~ 531 (575)
+..+-+++..+...+.+.++.. .-.+-..+..+..+..|-.++++|+|++|...|+-...++|.+...++.+|.
T Consensus 6 ~~~~~~~~~~i~~al~~G~tlk------~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa 79 (165)
T PRK15331 6 NVSEERVAEMIWDAVSEGATLK------DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAA 79 (165)
T ss_pred hhhHHHHHHHHHHHHHCCCCHH------HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3344455555555555432211 1123346788999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhh
Q 008170 532 AYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYLLC 573 (575)
Q Consensus 532 ~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~~~ 573 (575)
|+..+++|++|+..|..+..++++++ ...|.++..+++...|
T Consensus 80 ~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 80 VCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 99999999999999999999988777 5677777777776554
No 94
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.12 E-value=1.4e-05 Score=68.17 Aligned_cols=86 Identities=13% Similarity=0.057 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH------HH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR------AR 559 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~------~~ 559 (575)
.+.+++.|..++++|+|++|+..|.++++.+|++ ..+++++|.++.+.+++++|+..++++++.+|++. ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578999999999999999999999999999876 67899999999999999999999999999998852 45
Q ss_pred HHHHHHHHHHhhhhh
Q 008170 560 VGYVDCSMLIYLLCI 574 (575)
Q Consensus 560 ~~~~~~~l~~~~~~i 574 (575)
++.++..++++..|+
T Consensus 82 ~~~~~~~~~~~~~A~ 96 (119)
T TIGR02795 82 LGMSLQELGDKEKAK 96 (119)
T ss_pred HHHHHHHhCChHHHH
Confidence 666776677766554
No 95
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.11 E-value=1.1e-05 Score=74.71 Aligned_cols=71 Identities=20% Similarity=0.275 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG---TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p---~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
|++.+.+.|.|.-+..+|+|++|...|.+|+. +| ..+..|.|.+.|.+++|+++.|.++++++|+++|+++
T Consensus 100 p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 100 PNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred CCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence 44444555555555555555555555555553 22 2244555555555555555555555555555555554
No 96
>PLN02789 farnesyltranstransferase
Probab=98.10 E-value=2.3e-05 Score=79.18 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=50.5
Q ss_pred ChhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQW--NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGY 562 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~--~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~ 562 (575)
+|+....|..++..+.+.++. ++++.+++++|+++|++..+|++|+.++.++++|++++++|+++|++||+|..++.+
T Consensus 102 npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~ 181 (320)
T PLN02789 102 NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQ 181 (320)
T ss_pred CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHH
Confidence 455556666666666655553 556666666666666666666666666666666666666666666666666644333
Q ss_pred HH
Q 008170 563 VD 564 (575)
Q Consensus 563 ~~ 564 (575)
.+
T Consensus 182 R~ 183 (320)
T PLN02789 182 RY 183 (320)
T ss_pred HH
Confidence 33
No 97
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.09 E-value=1.2e-05 Score=89.88 Aligned_cols=90 Identities=10% Similarity=0.001 Sum_probs=59.6
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVG 561 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~ 561 (575)
+|+....+.++|..++++|++++|+..|+++++++|+++.++.+++.++.++|++++|+..|+++++.+|++.. ..+
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 34556666677777777777777777777777777777777777777777777777777777777777776542 234
Q ss_pred HHHHHHHHhhhhh
Q 008170 562 YVDCSMLIYLLCI 574 (575)
Q Consensus 562 ~~~~~l~~~~~~i 574 (575)
.++...|++..|+
T Consensus 360 ~al~~~G~~deA~ 372 (656)
T PRK15174 360 AALLQAGKTSEAE 372 (656)
T ss_pred HHHHHCCCHHHHH
Confidence 4455556655554
No 98
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.09 E-value=7.7e-06 Score=65.45 Aligned_cols=61 Identities=20% Similarity=0.298 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~a 549 (575)
+...++.+|.++++.|+|++|+..+++ ++.++.+...++.+|.|++++++|++|++.++++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 566788899999999999999999999 8899989899999999999999999999999875
No 99
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=4.1e-06 Score=83.43 Aligned_cols=87 Identities=31% Similarity=0.458 Sum_probs=76.2
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH---
Q 008170 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRAR--- 559 (575)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~--- 559 (575)
++...+++..+.+|+.++++.+|.+|+..|+.||++.|+++..|.||+.+++.+++|++|.-|+++.++++|...+.
T Consensus 43 ~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r 122 (486)
T KOG0550|consen 43 QEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLR 122 (486)
T ss_pred chHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccc
Confidence 34467788999999999999999999999999999999999999999999999999999999999999999987743
Q ss_pred HHHHHHHHHH
Q 008170 560 VGYVDCSMLI 569 (575)
Q Consensus 560 ~~~~~~~l~~ 569 (575)
.+++..++++
T Consensus 123 ~~~c~~a~~~ 132 (486)
T KOG0550|consen 123 EGQCHLALSD 132 (486)
T ss_pred hhhhhhhhHH
Confidence 3444444443
No 100
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.7e-05 Score=80.16 Aligned_cols=85 Identities=14% Similarity=0.050 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
|+...+|.-.|-.|...++-..|++.|++|++++|.|..+|+.+|++|.-++.+.=|+-+|++|+++.|++. .++|.
T Consensus 361 p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~ 440 (559)
T KOG1155|consen 361 PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGE 440 (559)
T ss_pred cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555555555555555555555444 34444
Q ss_pred HHHHHHHh
Q 008170 563 VDCSMLIY 570 (575)
Q Consensus 563 ~~~~l~~~ 570 (575)
++..+.+.
T Consensus 441 CY~kl~~~ 448 (559)
T KOG1155|consen 441 CYEKLNRL 448 (559)
T ss_pred HHHHhccH
Confidence 44444333
No 101
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.04 E-value=8.2e-06 Score=52.82 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV 556 (575)
Q Consensus 523 ~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~ 556 (575)
+.+|+++|.+|..++++++|+.+|+++|+++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3577888888888888888888888888888864
No 102
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.04 E-value=1.9e-05 Score=88.32 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---H
Q 008170 486 IDASELLKEKGNAAFKGKQWNK----AVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---A 558 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~----Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~ 558 (575)
|+....+.+.|..+++.|++++ |+..|+++++++|+++.++.++|.++.++|++++|+..++++++++|++. .
T Consensus 243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~ 322 (656)
T PRK15174 243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA 322 (656)
T ss_pred CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3446677777777777777774 67777777777777777777777777777777777777777777777766 3
Q ss_pred HHHHHHHHHHHhhhhh
Q 008170 559 RVGYVDCSMLIYLLCI 574 (575)
Q Consensus 559 ~~~~~~~~l~~~~~~i 574 (575)
.++.++...|+|..|+
T Consensus 323 ~La~~l~~~G~~~eA~ 338 (656)
T PRK15174 323 MYARALRQVGQYTAAS 338 (656)
T ss_pred HHHHHHHHCCCHHHHH
Confidence 4455555566666554
No 103
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.04 E-value=4.8e-05 Score=69.68 Aligned_cols=84 Identities=23% Similarity=0.126 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHh
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYL-------ELGCFQ-------QAEEDCSKTISL 552 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~-------~l~~~~-------~Ai~~~~~al~l 552 (575)
..+..+.+.|..+.+.|++++|+..|.++++++|.....+.+++.++. ++|+++ +|+..+++++..
T Consensus 70 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~ 149 (168)
T CHL00033 70 DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIAL 149 (168)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Confidence 346789999999999999999999999999999999999999999999 777877 555556667888
Q ss_pred CcccHHHHHHHHHHHHHh
Q 008170 553 DKKVRARVGYVDCSMLIY 570 (575)
Q Consensus 553 ~P~~~~~~~~~~~~l~~~ 570 (575)
+|++.......+..+|+|
T Consensus 150 ~p~~~~~~~~~~~~~~~~ 167 (168)
T CHL00033 150 APGNYIEAQNWLKITGRF 167 (168)
T ss_pred CcccHHHHHHHHHHhcCC
Confidence 998776555555555554
No 104
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.02 E-value=4.5e-05 Score=70.15 Aligned_cols=78 Identities=24% Similarity=0.258 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhC
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC--------------FQQAEEDCSKTISLD 553 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~--------------~~~Ai~~~~~al~l~ 553 (575)
....+.+.|..+++.|+|++|+..|.+++++.|++...+.++|.++..+++ +++|++.++++++++
T Consensus 71 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 71 RSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 467899999999999999999999999999999999999999999999988 688999999999999
Q ss_pred cccHHHHHHHHH
Q 008170 554 KKVRARVGYVDC 565 (575)
Q Consensus 554 P~~~~~~~~~~~ 565 (575)
|++.......+.
T Consensus 151 p~~~~~~~~~~~ 162 (172)
T PRK02603 151 PNNYIEAQNWLK 162 (172)
T ss_pred chhHHHHHHHHH
Confidence 998644444333
No 105
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.01 E-value=3.7e-05 Score=75.32 Aligned_cols=107 Identities=14% Similarity=0.061 Sum_probs=76.5
Q ss_pred CCchhHHhHHHHHHH--HhhhhhhhccCCCCCCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HH
Q 008170 450 GGDKFLLDTVLDLYD--SLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---AT 524 (575)
Q Consensus 450 ~~d~~ll~~a~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~ 524 (575)
+++......+..+.. .....+......-... .+..+.....++.+|..|+..|+|++|+..|.++++..|++ +.
T Consensus 140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKK-YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 356666666655422 1222232222222111 12233445778889999999999999999999999887764 78
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 525 YYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 525 ~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
+++++|.++.++|++++|+..|+++++..|+..
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 899999999999999999999999999999876
No 106
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.99 E-value=6.6e-06 Score=53.18 Aligned_cols=34 Identities=38% Similarity=0.567 Sum_probs=31.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008170 511 YYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE 544 (575)
Q Consensus 511 ~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~ 544 (575)
+|++||+++|+++.+|+|+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4899999999999999999999999999999963
No 107
>PLN02789 farnesyltranstransferase
Probab=97.96 E-value=5e-05 Score=76.72 Aligned_cols=90 Identities=12% Similarity=0.001 Sum_probs=69.3
Q ss_pred ChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCcccHH---
Q 008170 485 SIDASELLKEKGNAAFKGK-QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF--QQAEEDCSKTISLDKKVRA--- 558 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g-~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~--~~Ai~~~~~al~l~P~~~~--- 558 (575)
+|++...|..++..+.+.+ ++++++..++++++.+|++..+|++|+.++.++++. +++++.++++++++|+|..
T Consensus 67 nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~ 146 (320)
T PLN02789 67 NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWS 146 (320)
T ss_pred CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHH
Confidence 5777888888888888887 578888888888888888888888888888888774 6778888888888888773
Q ss_pred HHHHHHHHHHHhhhhh
Q 008170 559 RVGYVDCSMLIYLLCI 574 (575)
Q Consensus 559 ~~~~~~~~l~~~~~~i 574 (575)
.++.+...+++|..+|
T Consensus 147 ~R~w~l~~l~~~~eeL 162 (320)
T PLN02789 147 HRQWVLRTLGGWEDEL 162 (320)
T ss_pred HHHHHHHHhhhHHHHH
Confidence 4455555555555544
No 108
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.94 E-value=5.6e-05 Score=72.09 Aligned_cols=84 Identities=17% Similarity=0.214 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD 564 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~ 564 (575)
..+.+.|..++..|++++|+..|.++++.. +.....+.++|.++.++|++++|+..++++++.+|++. ..++.++
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 179 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY 179 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence 344444444444444444444444444432 22334444455555555555555555555555555443 2333334
Q ss_pred HHHHHhhhh
Q 008170 565 CSMLIYLLC 573 (575)
Q Consensus 565 ~~l~~~~~~ 573 (575)
...+++..|
T Consensus 180 ~~~~~~~~A 188 (234)
T TIGR02521 180 YLRGQYKDA 188 (234)
T ss_pred HHcCCHHHH
Confidence 444444433
No 109
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.94 E-value=4e-05 Score=68.71 Aligned_cols=74 Identities=23% Similarity=0.246 Sum_probs=59.3
Q ss_pred ChhHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----------HHHHH
Q 008170 485 SIDASELLKEKGNAAFKG----------KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-----------FQQAE 543 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~----------g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~-----------~~~Ai 543 (575)
+|.+++.|.+.|.++... .-+++|+..|++||.++|+...+++++|.+|..++. |++|.
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 467789999999888654 346889999999999999999999999999998753 88999
Q ss_pred HHHHHHHHhCcccHH
Q 008170 544 EDCSKTISLDKKVRA 558 (575)
Q Consensus 544 ~~~~~al~l~P~~~~ 558 (575)
.+|++|.+++|+|..
T Consensus 101 ~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 101 EYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHHH-TT-HH
T ss_pred HHHHHHHhcCCCcHH
Confidence 999999999999873
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.91 E-value=5.5e-05 Score=73.34 Aligned_cols=72 Identities=15% Similarity=0.100 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCc
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT---YYSNRAAAYLEL--------GCFQQAEEDCSKTISLDK 554 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~---~~~~ra~~~~~l--------~~~~~Ai~~~~~al~l~P 554 (575)
+.....+..+|..++++|++++|+..|+++++..|++.. +++++|.++.++ +++++|++.++++++.+|
T Consensus 67 ~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 146 (235)
T TIGR03302 67 PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP 146 (235)
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence 445578899999999999999999999999999998765 799999999987 889999999999999999
Q ss_pred ccH
Q 008170 555 KVR 557 (575)
Q Consensus 555 ~~~ 557 (575)
++.
T Consensus 147 ~~~ 149 (235)
T TIGR03302 147 NSE 149 (235)
T ss_pred CCh
Confidence 876
No 111
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=5.6e-05 Score=78.36 Aligned_cols=78 Identities=21% Similarity=0.254 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDC 565 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~~ 565 (575)
-.-.+.|.|-.+.+.++|++||.+|+++|.+.|+++..+...|.+|..+|+++.|++.|.++|-++|++....-.+..
T Consensus 454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 345688999999999999999999999999999999999999999999999999999999999999999743333333
No 112
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.0001 Score=74.72 Aligned_cols=91 Identities=14% Similarity=0.084 Sum_probs=81.7
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HH
Q 008170 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---AR 559 (575)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~ 559 (575)
+.+|.+-++|+-.|..|--.+...-|+-+|++|+++.|+|...|--+|.||.++++.++|+.+|.+++...-.+. ..
T Consensus 392 di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 392 DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR 471 (559)
T ss_pred hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH
Confidence 457899999999999999999999999999999999999999999999999999999999999999998865433 56
Q ss_pred HHHHHHHHHHhhhh
Q 008170 560 VGYVDCSMLIYLLC 573 (575)
Q Consensus 560 ~~~~~~~l~~~~~~ 573 (575)
++.++..++++..|
T Consensus 472 LakLye~l~d~~eA 485 (559)
T KOG1155|consen 472 LAKLYEELKDLNEA 485 (559)
T ss_pred HHHHHHHHHhHHHH
Confidence 77778888777665
No 113
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.88 E-value=0.00016 Score=62.89 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
....+++.|...++.|+|++|++.|+.....-|-. ..+...++.+|++.++|++|+..+++-|+|+|+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 36789999999999999999999999999887654 68899999999999999999999999999999988
No 114
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.87 E-value=3e-05 Score=59.30 Aligned_cols=54 Identities=24% Similarity=0.275 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHH-Hhhhhh
Q 008170 521 TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSML-IYLLCI 574 (575)
Q Consensus 521 ~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~-~~~~~i 574 (575)
+++..|+++|.+++++++|++|+.+|+++++++|++. ..+|.++..++ +|..|+
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~ 58 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAI 58 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHH
Confidence 3678999999999999999999999999999999988 46777777777 677765
No 115
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.87 E-value=5.2e-05 Score=60.49 Aligned_cols=67 Identities=27% Similarity=0.432 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
...+...|..+...+++++|++.|+++++..|.+...++.++.++..++++++|...++++++++|+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 34 ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 4778899999999999999999999999999999999999999999999999999999999998874
No 116
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.86 E-value=0.00012 Score=62.38 Aligned_cols=66 Identities=15% Similarity=0.047 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
+.+++.+..+-..|+.++|+..|.++++...+. ..++.++|.++..+|++++|+..+++++...|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 356778888888888888888888888765443 567888888888888888888888888887776
No 117
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.81 E-value=4.5e-05 Score=49.20 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV 556 (575)
Q Consensus 524 ~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~ 556 (575)
.+|+++|.+++++|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456667777777777777777777777776654
No 118
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.79 E-value=6.7e-05 Score=74.92 Aligned_cols=88 Identities=13% Similarity=0.114 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV---RARVGYV 563 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~---~~~~~~~ 563 (575)
.+...|...|..+.+.|++++|+..|+++++++|++..++..++.++...|+++++.+.+++..+..|++ ...++.+
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~ 223 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAA 223 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 5577889999999999999999999999999999987777777777666666666555555544443332 2556666
Q ss_pred HHHHHHhhhhh
Q 008170 564 DCSMLIYLLCI 574 (575)
Q Consensus 564 ~~~l~~~~~~i 574 (575)
+..+|++..|+
T Consensus 224 ~~~lg~~~~Al 234 (280)
T PF13429_consen 224 YLQLGRYEEAL 234 (280)
T ss_dssp HHHHT-HHHHH
T ss_pred hcccccccccc
Confidence 66666666554
No 119
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.79 E-value=0.00016 Score=70.34 Aligned_cols=71 Identities=10% Similarity=0.099 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY---YSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~---~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
...+.++..|..++++|+|++|++.|++.+...|....+ .+++|.+|+++++|++|+..+++.++++|+++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 356778899999999999999999999999999988654 59999999999999999999999999999987
No 120
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.78 E-value=8.8e-05 Score=72.42 Aligned_cols=74 Identities=15% Similarity=0.169 Sum_probs=70.5
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
.+|+.-.+++.++.+|+..|+-.-|+..+++.|++.|+...+...||.+++++|++++|+.||+++|+.+|++.
T Consensus 67 ~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~ 140 (504)
T KOG0624|consen 67 GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNG 140 (504)
T ss_pred CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999654
No 121
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.78 E-value=2.4e-05 Score=81.28 Aligned_cols=71 Identities=18% Similarity=0.302 Sum_probs=68.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
+|.+...|..+|-.+-...++++||..|++|+++.|....++||+|.+++.+|.|+||+++|-.||.+.++
T Consensus 460 ~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 460 KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999876
No 122
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.77 E-value=0.00027 Score=80.80 Aligned_cols=88 Identities=11% Similarity=-0.051 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYV 563 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~ 563 (575)
.....+..++..+...|++++|++.++++++..|++..++.++|.++..+|++++|+..++++++++|++. ..++..
T Consensus 357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~ 436 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWT 436 (765)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999986 355666
Q ss_pred HHHHHHhhhhh
Q 008170 564 DCSMLIYLLCI 574 (575)
Q Consensus 564 ~~~l~~~~~~i 574 (575)
...+++|..|.
T Consensus 437 al~~~~~~~A~ 447 (765)
T PRK10049 437 ALDLQEWRQMD 447 (765)
T ss_pred HHHhCCHHHHH
Confidence 66667776654
No 123
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.76 E-value=0.00012 Score=75.64 Aligned_cols=90 Identities=14% Similarity=-0.050 Sum_probs=75.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-------
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR------- 557 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~------- 557 (575)
.+.....+...|..+..+|++++|+..++++++++|++..++..++.+++.+|++++|+..++++++..|...
T Consensus 110 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~ 189 (355)
T cd05804 110 NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNW 189 (355)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHH
Confidence 4566777778899999999999999999999999999999999999999999999999999999999876432
Q ss_pred HHHHHHHHHHHHhhhhh
Q 008170 558 ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 558 ~~~~~~~~~l~~~~~~i 574 (575)
..++.++...|++..++
T Consensus 190 ~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 190 WHLALFYLERGDYEAAL 206 (355)
T ss_pred HHHHHHHHHCCCHHHHH
Confidence 24667777777776664
No 124
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.76 E-value=0.00031 Score=66.46 Aligned_cols=71 Identities=21% Similarity=0.249 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
...+.+++.|..++++|+|.+|+..|++.+...|.. ..+.+.++.++++.++|++|+..+++.++..|++.
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 357789999999999999999999999999998875 67899999999999999999999999999999877
No 125
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.76 E-value=8.7e-05 Score=88.70 Aligned_cols=89 Identities=10% Similarity=-0.021 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
|.+...+..+|..+.+.|++++|+..|+++++++|+++.++++++.+|..+|++++|++.++++++.+|++. ..++.
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~ 679 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVAL 679 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 445567788999999999999999999999999999999999999999999999999999999999988876 34666
Q ss_pred HHHHHHHhhhhh
Q 008170 563 VDCSMLIYLLCI 574 (575)
Q Consensus 563 ~~~~l~~~~~~i 574 (575)
++..+|++..|+
T Consensus 680 ~~~~~g~~~eA~ 691 (1157)
T PRK11447 680 AWAALGDTAAAQ 691 (1157)
T ss_pred HHHhCCCHHHHH
Confidence 666777776654
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.75 E-value=0.00019 Score=67.96 Aligned_cols=88 Identities=15% Similarity=0.021 Sum_probs=76.2
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG 561 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~ 561 (575)
+|.+.+.|..+|-.|.+.|++++|-..|.+++++.|+++.+++|++..|+-.|+++.|...+.++...-+.+. .++.
T Consensus 130 ~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLA 209 (257)
T COG5010 130 APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLA 209 (257)
T ss_pred CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 3677899999999999999999999999999999999999999999999999999999999999988776555 4555
Q ss_pred HHHHHHHHhhh
Q 008170 562 YVDCSMLIYLL 572 (575)
Q Consensus 562 ~~~~~l~~~~~ 572 (575)
.+....|++..
T Consensus 210 l~~~~~g~~~~ 220 (257)
T COG5010 210 LVVGLQGDFRE 220 (257)
T ss_pred HHHhhcCChHH
Confidence 55555555543
No 127
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.70 E-value=0.00014 Score=86.87 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
...+..+|..+..+|++++|++.|+++++++|+++.++++++.+|.++|++++|+..++++++++|++..
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 3457789999999999999999999999999999999999999999999999999999999999999884
No 128
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.69 E-value=0.00027 Score=74.02 Aligned_cols=66 Identities=14% Similarity=0.062 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV 556 (575)
Q Consensus 491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~ 556 (575)
.+...|..++++|++++|+..|+++++.+|++..+++.++.++.+.|++++|++.++++++.+|++
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 344555555555555555555555555555555555555555555555555555555555555543
No 129
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.69 E-value=7.7e-05 Score=48.17 Aligned_cols=34 Identities=29% Similarity=0.531 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS 522 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~ 522 (575)
+..|.++|..++.+|+|++|+.+|+++|+++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4679999999999999999999999999999974
No 130
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.68 E-value=0.00026 Score=80.81 Aligned_cols=72 Identities=8% Similarity=0.018 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
|.....+...+..+.+.|++++|+..++++++.+|+++. ++.++.++...|++++|+..++++++++|++..
T Consensus 80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~ 151 (765)
T PRK10049 80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQ 151 (765)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 444556667777777777777777777777777777777 777777777777777777777777777777663
No 131
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.66 E-value=0.00017 Score=83.62 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD 564 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~ 564 (575)
....+...|..++++|+|++|+..+.++++.+|+++.+++.+|.++.++|+|++|+..++++++..|++. ..++.++
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 100 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAY 100 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999988755 3445555
Q ss_pred HHHHHhhhhh
Q 008170 565 CSMLIYLLCI 574 (575)
Q Consensus 565 ~~l~~~~~~i 574 (575)
...|+|..++
T Consensus 101 ~~~g~~~~a~ 110 (899)
T TIGR02917 101 LLQGKFQQVL 110 (899)
T ss_pred HHCCCHHHHH
Confidence 5556665554
No 132
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.66 E-value=0.00011 Score=50.57 Aligned_cols=41 Identities=15% Similarity=0.023 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008170 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAA 531 (575)
Q Consensus 491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~ 531 (575)
.+...|..+.+.|++++|++.|+++++.+|+++.++..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45667777777777777777777777777777777776654
No 133
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.64 E-value=0.00034 Score=68.61 Aligned_cols=86 Identities=10% Similarity=-0.092 Sum_probs=72.1
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH------H
Q 008170 489 SELLKEKGNAA-FKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR------A 558 (575)
Q Consensus 489 a~~~~~~g~~~-~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~------~ 558 (575)
...+++.+..+ +++|+|++|+..|++.++..|++ +.+++.+|.+|+..++|++|+..|+++++..|++. .
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45667777776 77899999999999999999998 58999999999999999999999999999999865 2
Q ss_pred HHHHHHHHHHHhhhhh
Q 008170 559 RVGYVDCSMLIYLLCI 574 (575)
Q Consensus 559 ~~~~~~~~l~~~~~~i 574 (575)
.++.++..++++..|+
T Consensus 222 klg~~~~~~g~~~~A~ 237 (263)
T PRK10803 222 KVGVIMQDKGDTAKAK 237 (263)
T ss_pred HHHHHHHHcCCHHHHH
Confidence 3466666666666554
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.63 E-value=0.00036 Score=71.60 Aligned_cols=74 Identities=20% Similarity=0.142 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRAR 559 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~ 559 (575)
|++.-.+.-.+..+++.++.++|++.+++++.++|+...++.|+|.+|++.|++++|+..+++.+.-+|+++..
T Consensus 337 P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~ 410 (484)
T COG4783 337 PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNG 410 (484)
T ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchH
Confidence 56677888899999999999999999999999999999999999999999999999999999999999988743
No 135
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.62 E-value=0.0004 Score=80.42 Aligned_cols=72 Identities=22% Similarity=0.139 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
+..+..+...|..+++.|+|++|+..|+++++.+|++..++..++.++...|++++|+..++++++.+|++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 193 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNV 193 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh
Confidence 344455555555555555555555555555555555555555555555555555555555555555555544
No 136
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.60 E-value=0.00017 Score=46.43 Aligned_cols=34 Identities=21% Similarity=0.437 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS 522 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~ 522 (575)
++.|..+|..+++.|+|++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999985
No 137
>PRK15331 chaperone protein SicA; Provisional
Probab=97.59 E-value=0.00032 Score=62.44 Aligned_cols=71 Identities=13% Similarity=0.002 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
+-+.+.+..+|.++...++|++|+..|..+..++++++...+..|.||+.+++.++|+..|..++. +|.+.
T Consensus 68 ~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 68 FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 344668999999999999999999999999999999999999999999999999999999999998 57666
No 138
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.59 E-value=8.1e-05 Score=68.25 Aligned_cols=72 Identities=19% Similarity=0.177 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
.+.+..++++|+.|-..|-+.-|--.|++++.+.|+-+.+++.+|.-+...|+|+.|.+.|+-.+++||.+.
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence 466788888998888888888888889999999999999999999888888999999999999999998766
No 139
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.52 E-value=0.00051 Score=71.92 Aligned_cols=85 Identities=8% Similarity=-0.052 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR--ARVGYVDC 565 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~--~~~~~~~~ 565 (575)
...+...|..+.+.|++++|++.|+++++.+|++ ..++..++.+|.++|++++|+..++++++.+|+.. ..++.++.
T Consensus 214 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~ 293 (389)
T PRK11788 214 VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLE 293 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3455556666666666666666666666665554 34455566666666666666666666666665543 23333444
Q ss_pred HHHHhhhh
Q 008170 566 SMLIYLLC 573 (575)
Q Consensus 566 ~l~~~~~~ 573 (575)
..+++..|
T Consensus 294 ~~g~~~~A 301 (389)
T PRK11788 294 EQEGPEAA 301 (389)
T ss_pred HhCCHHHH
Confidence 44444433
No 140
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00018 Score=74.71 Aligned_cols=90 Identities=21% Similarity=0.268 Sum_probs=77.8
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-------p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
.|.+.-.+.+.|.++|+.+.|.+|+..|+++++.- +.....+.|+|.++.+++++++||..++++|.+.|+++
T Consensus 410 ~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~ 489 (611)
T KOG1173|consen 410 APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA 489 (611)
T ss_pred CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch
Confidence 36778889999999999999999999999999432 12356799999999999999999999999999999988
Q ss_pred ---HHHHHHHHHHHHhhhhh
Q 008170 558 ---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 558 ---~~~~~~~~~l~~~~~~i 574 (575)
...|+++.-+|++..||
T Consensus 490 ~~~asig~iy~llgnld~Ai 509 (611)
T KOG1173|consen 490 STHASIGYIYHLLGNLDKAI 509 (611)
T ss_pred hHHHHHHHHHHHhcChHHHH
Confidence 46788888888888776
No 141
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.49 E-value=0.00067 Score=59.04 Aligned_cols=71 Identities=21% Similarity=0.219 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC---------------HHHHHHHHHHH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGC---------------FQQAEEDCSKT 549 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~---------------~~~Ai~~~~~a 549 (575)
..++..+++..+|++++|++|+..|++.|+++|++ .-+++.+|++++++.+ ..+|+.+|++.
T Consensus 46 a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~l 125 (142)
T PF13512_consen 46 AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQL 125 (142)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHH
Confidence 34667889999999999999999999999999987 4579999999999987 99999999999
Q ss_pred HHhCcccHH
Q 008170 550 ISLDKKVRA 558 (575)
Q Consensus 550 l~l~P~~~~ 558 (575)
++.-|++..
T Consensus 126 v~~yP~S~y 134 (142)
T PF13512_consen 126 VRRYPNSEY 134 (142)
T ss_pred HHHCcCChh
Confidence 999999773
No 142
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.48 E-value=0.00012 Score=71.55 Aligned_cols=73 Identities=25% Similarity=0.259 Sum_probs=68.8
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
.|.++-.+.|++.+|+++++|..|...++.|+.++.....+|..|+.+...+|+..||.+||+.+|+|.|++.
T Consensus 127 ~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 127 YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 4556778899999999999999999999999999999999999999999999999999999999999999876
No 143
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.46 E-value=0.00053 Score=73.91 Aligned_cols=69 Identities=17% Similarity=0.079 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
++..+...|..+..+|++++|...|++|++++| +..+|..+|.++...|++++|++.|++|++++|.++
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 356777889999999999999999999999999 588999999999999999999999999999999876
No 144
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.46 E-value=0.00019 Score=71.60 Aligned_cols=89 Identities=16% Similarity=0.096 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
|++...+...+..+...|+++++.+.+....+..|+++.++..+|.++..+|++++|+..++++++.+|+++ ..++.
T Consensus 177 P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~ 256 (280)
T PF13429_consen 177 PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYAD 256 (280)
T ss_dssp TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccc
Confidence 566778888999999999999988888888888888888999999999999999999999999999999988 56777
Q ss_pred HHHHHHHhhhhh
Q 008170 563 VDCSMLIYLLCI 574 (575)
Q Consensus 563 ~~~~l~~~~~~i 574 (575)
++...|++..|+
T Consensus 257 ~l~~~g~~~~A~ 268 (280)
T PF13429_consen 257 ALEQAGRKDEAL 268 (280)
T ss_dssp HHT---------
T ss_pred cccccccccccc
Confidence 777778777664
No 145
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.00081 Score=63.41 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcccHHHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG---CFQQAEEDCSKTISLDKKVRARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~---~~~~Ai~~~~~al~l~P~~~~~~~~ 562 (575)
+.+.++|.+.+..|+..|+|++|.-||.+.+-+.|.++..+..+|.+++-+| +++-|.++|.++++++|.+...+..
T Consensus 151 ~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 151 MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 3568899999999999999999999999999999999999999999999875 6888999999999999977654333
Q ss_pred H
Q 008170 563 V 563 (575)
Q Consensus 563 ~ 563 (575)
+
T Consensus 231 I 231 (289)
T KOG3060|consen 231 I 231 (289)
T ss_pred H
Confidence 3
No 146
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.43 E-value=0.00081 Score=73.57 Aligned_cols=87 Identities=16% Similarity=0.024 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
|.....|+.+|.+|-++|+.++++.++..|-.++|++...|...+....++|++.+|+-+|.+||+.+|.+. ..+..
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~ 249 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSS 249 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 344555555555555555555555555555555555555555555555555555555555555555555544 23334
Q ss_pred HHHHHHHhhh
Q 008170 563 VDCSMLIYLL 572 (575)
Q Consensus 563 ~~~~l~~~~~ 572 (575)
++..+|++..
T Consensus 250 L~~~~G~~~~ 259 (895)
T KOG2076|consen 250 LYQKTGDLKR 259 (895)
T ss_pred HHHHhChHHH
Confidence 4444444433
No 147
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.36 E-value=0.0014 Score=62.99 Aligned_cols=73 Identities=12% Similarity=0.068 Sum_probs=47.9
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
..-.+++++=+|..+|.+|+|++|...|...++-.|++ +++++.+|.|..++++.++|...++++++..|+..
T Consensus 174 s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 174 STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 33444455556777777777777777777766665544 56677777777777777777777777777766655
No 148
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.34 E-value=0.00059 Score=70.25 Aligned_cols=92 Identities=23% Similarity=0.246 Sum_probs=80.0
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCcccHHH
Q 008170 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL---GCFQQAEEDCSKTISLDKKVRAR 559 (575)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l---~~~~~Ai~~~~~al~l~P~~~~~ 559 (575)
.+-++..+.++.+||..|-.+....|+..|.++++..|+...+|.||+.++++. ++...|+.||..++++||-..++
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka 447 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA 447 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence 455788999999999999999999999999999999999999999999999986 57889999999999999988866
Q ss_pred HHHHHH---HHHHhhhhh
Q 008170 560 VGYVDC---SMLIYLLCI 574 (575)
Q Consensus 560 ~~~~~~---~l~~~~~~i 574 (575)
++++.. .+++|+.||
T Consensus 448 h~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 448 HFRLARALNELTRYLEAL 465 (758)
T ss_pred HHHHHHHHHHHhhHHHhh
Confidence 555554 456666655
No 149
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.34 E-value=0.00058 Score=47.00 Aligned_cols=40 Identities=23% Similarity=0.195 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 008170 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYV 563 (575)
Q Consensus 524 ~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~ 563 (575)
.+++.+|.+|..+|++++|++.|+++++.+|++...+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 5789999999999999999999999999999998755443
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.33 E-value=0.0015 Score=58.18 Aligned_cols=89 Identities=12% Similarity=0.010 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL--DKKVRARV 560 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l--~P~~~~~~ 560 (575)
+-.....+..+..++.+|+|++|+..|+++++..|+. ..+.++++.+++.+++|++|+..+++.-.- .|.....+
T Consensus 45 ~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~ 124 (145)
T PF09976_consen 45 PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELL 124 (145)
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHH
Confidence 3446778889999999999999999999999987665 568899999999999999999999763211 11112567
Q ss_pred HHHHHHHHHhhhhh
Q 008170 561 GYVDCSMLIYLLCI 574 (575)
Q Consensus 561 ~~~~~~l~~~~~~i 574 (575)
|.++...|++..|+
T Consensus 125 Gdi~~~~g~~~~A~ 138 (145)
T PF09976_consen 125 GDIYLAQGDYDEAR 138 (145)
T ss_pred HHHHHHCCCHHHHH
Confidence 88888888887765
No 151
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.32 E-value=0.00036 Score=71.86 Aligned_cols=57 Identities=9% Similarity=-0.043 Sum_probs=50.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHhhhhh
Q 008170 518 LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR------ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 518 ~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~------~~~~~~~~~l~~~~~~i 574 (575)
.+|+++.+|+|+|.+|+++|+|++|+..|+++|+++|++. .+++.++..+|++..|+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAl 132 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAA 132 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5899999999999999999999999999999999999975 56666677777777665
No 152
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.26 E-value=0.0014 Score=67.45 Aligned_cols=89 Identities=13% Similarity=0.056 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
+.....++-++..++..|++++|+..++..+...|+|+-++..++.++++.++.++|++.+++++.++|+.. ..++.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 455778889999999999999999999999999999999999999999999999999999999999999976 57788
Q ss_pred HHHHHHHhhhhh
Q 008170 563 VDCSMLIYLLCI 574 (575)
Q Consensus 563 ~~~~l~~~~~~i 574 (575)
.+...|++..+|
T Consensus 383 all~~g~~~eai 394 (484)
T COG4783 383 ALLKGGKPQEAI 394 (484)
T ss_pred HHHhcCChHHHH
Confidence 888888877665
No 153
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.25 E-value=0.00047 Score=44.32 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 524 ~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
.+|+.+|.+|.++|++++|++.++++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46677777777777777777777777777764
No 154
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.24 E-value=0.0014 Score=74.41 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
.....+...|..+..+|+|++|++.|+++++.+|+++.++..++..+.+++++++|++.++++++++|++..
T Consensus 100 ~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~ 171 (822)
T PRK14574 100 ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN 171 (822)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH
Confidence 445667777889999999999999999999999999999999999999999999999999999999998664
No 155
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.0016 Score=71.93 Aligned_cols=81 Identities=15% Similarity=0.223 Sum_probs=72.7
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYV 563 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~ 563 (575)
.+..++.++..|..+..+|+|++|..+|.++++.++++ ...++.+|+.|++.|++++|+.+|+++++..|++...+..+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 35678889999999999999999999999999999998 77899999999999999999999999999999999544433
Q ss_pred HH
Q 008170 564 DC 565 (575)
Q Consensus 564 ~~ 565 (575)
++
T Consensus 383 G~ 384 (1018)
T KOG2002|consen 383 GC 384 (1018)
T ss_pred Hh
Confidence 33
No 156
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.19 E-value=0.0026 Score=69.81 Aligned_cols=87 Identities=16% Similarity=0.078 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYV 563 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~ 563 (575)
.....+..++|.+|-.|++++|.+.+.++|+++|.++.+|+.+|.+|.++|+.+++....-.|--++|+++ ..++..
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 44788999999999999999999999999999999999999999999999999999999999999999877 344444
Q ss_pred HHHHHHhhhh
Q 008170 564 DCSMLIYLLC 573 (575)
Q Consensus 564 ~~~l~~~~~~ 573 (575)
...++.+.+|
T Consensus 217 s~~~~~i~qA 226 (895)
T KOG2076|consen 217 SEQLGNINQA 226 (895)
T ss_pred HHhcccHHHH
Confidence 4444544443
No 157
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.14 E-value=0.0017 Score=69.57 Aligned_cols=119 Identities=15% Similarity=0.133 Sum_probs=78.4
Q ss_pred CCcccccccccCCchhHHhHHHHHHHHhhhhhhhccCCCCCCCCC-------------CChhHHHHHHHHHHHHHHcCCH
Q 008170 439 HPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTN-------------GSIDASELLKEKGNAAFKGKQW 505 (575)
Q Consensus 439 lPvGlqivg~~~~d~~ll~~a~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~~a~~~~~~g~~~~~~g~~ 505 (575)
.|.==.+.|.--.|..+.+-+-.+-+.....+..+.....-.+++ .+|-....|+..|.++++.+++
T Consensus 456 d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 456 DPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred cchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 444445566666666666666555554433333332222111111 2445566778888888888888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 506 NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 506 ~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
+.|.++|+..+.++|++..+|+|++.+|+++++-.+|...+++|++-+-+++
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w 587 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW 587 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC
Confidence 8888888888888888888888888888888888888888888887775444
No 158
>PRK11906 transcriptional regulator; Provisional
Probab=97.13 E-value=0.0016 Score=67.29 Aligned_cols=73 Identities=16% Similarity=0.097 Sum_probs=68.8
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
++.++.++...|......++++.|+..|++|+.++|+++.+|+.+|.++.-.|+.++|++..+++++++|...
T Consensus 334 d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 334 TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 3677899999999999999999999999999999999999999999999999999999999999999999644
No 159
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.09 E-value=0.00057 Score=69.01 Aligned_cols=86 Identities=19% Similarity=0.178 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD 564 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~ 564 (575)
++.++.++||..|..|+|++|.+.|.+||.-+..+..+++|.|+.+.++|+.++|+++|-+.-.+--++. ...+.++
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy 568 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY 568 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4567788999999999999999999999998888899999999999999999999999988654444444 3444455
Q ss_pred HHHHHhhhh
Q 008170 565 CSMLIYLLC 573 (575)
Q Consensus 565 ~~l~~~~~~ 573 (575)
..+.+-.+|
T Consensus 569 e~led~aqa 577 (840)
T KOG2003|consen 569 ELLEDPAQA 577 (840)
T ss_pred HHhhCHHHH
Confidence 544444443
No 160
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.06 E-value=0.00038 Score=71.40 Aligned_cols=79 Identities=22% Similarity=0.230 Sum_probs=71.7
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYV 563 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~ 563 (575)
+|+.+..+-+++.++++.++|..|+....+||+++|....+|+.||.+.++++++.+|+.++++...+.|+.++.+-.+
T Consensus 34 dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 34 DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 3566778888999999999999999999999999999999999999999999999999999999999999988544333
No 161
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.06 E-value=0.0031 Score=65.28 Aligned_cols=80 Identities=14% Similarity=0.049 Sum_probs=42.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhh
Q 008170 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYL 571 (575)
Q Consensus 495 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~ 571 (575)
.+..++..++..+|++.+.++++.+|.+..++...+..+++.++++.|+..+++++++.|+.. ..++.++..+++|.
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE 285 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH
Confidence 344444455555555555555555555555555555555555555555555555555555443 34445555555555
Q ss_pred hhh
Q 008170 572 LCI 574 (575)
Q Consensus 572 ~~i 574 (575)
.||
T Consensus 286 ~AL 288 (395)
T PF09295_consen 286 NAL 288 (395)
T ss_pred HHH
Confidence 443
No 162
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.05 E-value=0.0025 Score=67.47 Aligned_cols=89 Identities=11% Similarity=0.181 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
++.---|.-.|..+...++|++||.+|+.|+.++|+|..+|..++....++++|+.....-.+.++++|.+. ..++.
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Av 151 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAV 151 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 344557889999999999999999999999999999999999999999999999999999999999999755 45666
Q ss_pred HHHHHHHhhhhh
Q 008170 563 VDCSMLIYLLCI 574 (575)
Q Consensus 563 ~~~~l~~~~~~i 574 (575)
.+..+|+|.+|+
T Consensus 152 s~~L~g~y~~A~ 163 (700)
T KOG1156|consen 152 AQHLLGEYKMAL 163 (700)
T ss_pred HHHHHHHHHHHH
Confidence 677778887764
No 163
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.0019 Score=71.39 Aligned_cols=73 Identities=22% Similarity=0.328 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
|+..-.+.-++...|+.++|..|+.+|.+++.++|.. +.....+|.|+.++++.+.|+..+.++++|||.+..
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~ 234 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVS 234 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHH
Confidence 5678899999999999999999999999999999976 567788999999999999999999999999998774
No 164
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0044 Score=58.16 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
...-.+.|...++++.++|-++++..+..|..+|.+..+||.||.++...-+..+|..|+.++|+++|.-.
T Consensus 228 ~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 228 MITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred hhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 34456889999999999999999999999999999999999999999999999999999999999999755
No 165
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.99 E-value=0.0015 Score=69.96 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=62.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Q 008170 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGY 562 (575)
Q Consensus 492 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~ 562 (575)
....|+..+++++|+++.++++..++++|-....|+++|.|.+++++++.|..+|.+++.++|++..++.+
T Consensus 488 ~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnN 558 (777)
T KOG1128|consen 488 QRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNN 558 (777)
T ss_pred HHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhh
Confidence 33445555678999999999999999999999999999999999999999999999999999998844333
No 166
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.96 E-value=0.0032 Score=68.01 Aligned_cols=88 Identities=19% Similarity=0.071 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCcccHHH---H
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE--DCSKTISLDKKVRAR---V 560 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~--~~~~al~l~P~~~~~---~ 560 (575)
+..+..|+..|..+..+|++++|.+.|..|+.+||+++.....+|.++.+.|+..-|.. .+..++++||.|.++ +
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L 760 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL 760 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 55677889999999999999999999999999999999999999999999998777777 889999999988854 4
Q ss_pred HHHHHHHHHhhhh
Q 008170 561 GYVDCSMLIYLLC 573 (575)
Q Consensus 561 ~~~~~~l~~~~~~ 573 (575)
|.+...+|+...|
T Consensus 761 G~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 761 GEVFKKLGDSKQA 773 (799)
T ss_pred HHHHHHccchHHH
Confidence 4444555665543
No 167
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.96 E-value=0.0046 Score=60.39 Aligned_cols=89 Identities=10% Similarity=0.052 Sum_probs=77.9
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH----H
Q 008170 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR----A 558 (575)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~----~ 558 (575)
+.+-+.+..|-+.+..+....+.+.|...+.+|++.+|++..+-..+|.+++..|+|++|++.++.+++-||++. .
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 345677888999999999999999999999999999999999999999999999999999999999999999877 4
Q ss_pred HHHHHHHHHHHhh
Q 008170 559 RVGYVDCSMLIYL 571 (575)
Q Consensus 559 ~~~~~~~~l~~~~ 571 (575)
.+..++..+|+-.
T Consensus 254 ~L~~~Y~~lg~~~ 266 (389)
T COG2956 254 MLYECYAQLGKPA 266 (389)
T ss_pred HHHHHHHHhCCHH
Confidence 5666666666543
No 168
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.96 E-value=0.0088 Score=57.09 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
-+..|+++|...++.|+|++|+..|+......|.. ..+...++.++++-++|++|+...++-+++.|+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~ 105 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP 105 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence 47899999999999999999999999999887754 67899999999999999999999999999999887
No 169
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.93 E-value=0.0056 Score=63.14 Aligned_cols=86 Identities=16% Similarity=0.076 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------------------------------------HHHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT-------------------------------------YYSNRAA 531 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~-------------------------------------~~~~ra~ 531 (575)
.+....++..++..|++++|+..+.++++.+|++.. .+.+++.
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 122 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF 122 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence 445556777777888888888877777777666543 3446677
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170 532 AYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 532 ~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~~~i 574 (575)
++..+|++++|+..++++++++|++. ..++.++...+++..|+
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~ 168 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGI 168 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 88999999999999999999999876 45677777777777664
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.91 E-value=0.0057 Score=66.08 Aligned_cols=88 Identities=20% Similarity=0.072 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHH------------------------------
Q 008170 487 DASELLKEKGNAAFKGKQ---WNKAVNYYSEAIKLNGTSATYYSNRAAAY------------------------------ 533 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~---~~~Ai~~~~~al~~~p~~~~~~~~ra~~~------------------------------ 533 (575)
-.+-.++-+|..++..++ +++|+.+|++|++++|+++.+|..++.+|
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~ 416 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL 416 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC
Confidence 346667778888877655 78999999999999998866555444433
Q ss_pred --------------HHcCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHhhhhh
Q 008170 534 --------------LELGCFQQAEEDCSKTISLDKKVR--ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 534 --------------~~l~~~~~Ai~~~~~al~l~P~~~--~~~~~~~~~l~~~~~~i 574 (575)
...|++++|...+++++.++|+.. ..+|.++...|++..|+
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~ 473 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAA 473 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 234667777777777777777422 23444444555555443
No 171
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.0094 Score=56.42 Aligned_cols=73 Identities=14% Similarity=0.020 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
|.+...++.+--..-.+|+--+||+...+-++.-+.|.++|..++..|+.+++|++|.-++++++-++|-++.
T Consensus 117 pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l 189 (289)
T KOG3060|consen 117 PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPL 189 (289)
T ss_pred cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHH
Confidence 5666677777777888899999999999999999999999999999999999999999999999999998883
No 172
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.89 E-value=0.0023 Score=58.97 Aligned_cols=79 Identities=18% Similarity=0.147 Sum_probs=71.7
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYV 563 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~ 563 (575)
+|+.+..+.-.|.-+...|+|+.|.+.|+-.+++||.+--++.|||..++--|+|+-|.+|+.+-.+-||+++.+--.+
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL 173 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL 173 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence 4677888888999999999999999999999999999999999999999999999999999999999999988543333
No 173
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.88 E-value=0.0059 Score=51.68 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
|+.+..|.|++..+.-+|+-++|++.+++|+++.-+. -.+|..||..|..+|+-+.|..||+.+-++-..+.
T Consensus 74 P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 74 PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 6778899999999999999999999999999997543 35799999999999999999999999988866544
No 174
>PRK10941 hypothetical protein; Provisional
Probab=96.88 E-value=0.0062 Score=59.72 Aligned_cols=70 Identities=19% Similarity=0.168 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
.+.+.+.-..+.++++|+.|+.+.+..+.++|+++.-+..||.+|.+++.+..|+.|++.-++..|+.+.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 4456677788999999999999999999999999999999999999999999999999999999999883
No 175
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.88 E-value=0.0028 Score=65.54 Aligned_cols=67 Identities=22% Similarity=0.285 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
|.++..+..++..++++++|+.|+...++++++.|++...|+.++.||.++|+|++|+..++-+-..
T Consensus 231 p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 231 PQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 4458899999999999999999999999999999999999999999999999999999887755433
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.87 E-value=0.009 Score=51.00 Aligned_cols=67 Identities=18% Similarity=0.090 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---SATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~---~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
+...+.+.+.|..+...|++++|+..+++++...|+ +..+...++.++..+|++++|++.+-+++.-
T Consensus 35 ~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 35 ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 455779999999999999999999999999999888 7888889999999999999999999988853
No 177
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.87 E-value=0.0069 Score=59.24 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=64.2
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
.+|+..++-..+|+.+..+|+|++|++.+...++.||+. +.+...+..||.++|+.++.+..+.++.+..++..
T Consensus 209 a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 209 ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 456666677788999999999999999999999999987 56888899999999999999999999999887654
No 178
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.87 E-value=0.014 Score=51.94 Aligned_cols=89 Identities=18% Similarity=0.069 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-----
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR----- 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~----- 557 (575)
.+.+...+......+..+++..+...+++.++-.|+. ..+.+.+|.+++..|++++|+..|++++...|+..
T Consensus 8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a 87 (145)
T PF09976_consen 8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLA 87 (145)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 3456677788888889999999999999999999988 67889999999999999999999999999876543
Q ss_pred -HHHHHHHHHHHHhhhhh
Q 008170 558 -ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 558 -~~~~~~~~~l~~~~~~i 574 (575)
..++.++...++|..|+
T Consensus 88 ~l~LA~~~~~~~~~d~Al 105 (145)
T PF09976_consen 88 RLRLARILLQQGQYDEAL 105 (145)
T ss_pred HHHHHHHHHHcCCHHHHH
Confidence 45777788888887765
No 179
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.85 E-value=0.0029 Score=68.31 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=68.5
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 484 GSIDASELLKEKGNAAFKGKQWNKAVN--YYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~--~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
-+|++.......|..+.+.|+-.-|.. ....+++++|.+.++|+++|.++.++|+.++|.++|+.|+++++.++
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 357788888999999999999888877 99999999999999999999999999999999999999999998776
No 180
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.82 E-value=0.0017 Score=71.71 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVGYV 563 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~~~ 563 (575)
.....|..+|-.|.+.+++.+|+..|+-|++.+|++..+|..+|.+|...|+|.-|++.|+|+..++|.+.. ..+.+
T Consensus 560 ~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ 639 (1238)
T KOG1127|consen 560 ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVM 639 (1238)
T ss_pred HHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHH
Confidence 345567779999999999999999999999999999999999999999999999999999999999998773 34556
Q ss_pred HHHHHHhhhhh
Q 008170 564 DCSMLIYLLCI 574 (575)
Q Consensus 564 ~~~l~~~~~~i 574 (575)
.+.+|+|..++
T Consensus 640 ecd~GkYkeal 650 (1238)
T KOG1127|consen 640 ECDNGKYKEAL 650 (1238)
T ss_pred HHHhhhHHHHH
Confidence 67788887765
No 181
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.81 E-value=0.015 Score=56.49 Aligned_cols=72 Identities=18% Similarity=0.046 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC------------------HHHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGC------------------FQQAEE 544 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~------------------~~~Ai~ 544 (575)
+.........|..+++.++|++|+..|++.++..|++ ..+++.+|.++..+++ -.+|+.
T Consensus 66 ~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~ 145 (243)
T PRK10866 66 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR 145 (243)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH
Confidence 4555668899999999999999999999999999887 5679999999766541 357889
Q ss_pred HHHHHHHhCcccH
Q 008170 545 DCSKTISLDKKVR 557 (575)
Q Consensus 545 ~~~~al~l~P~~~ 557 (575)
.+++.++..|+..
T Consensus 146 ~~~~li~~yP~S~ 158 (243)
T PRK10866 146 DFSKLVRGYPNSQ 158 (243)
T ss_pred HHHHHHHHCcCCh
Confidence 9999999999866
No 182
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.79 E-value=0.0029 Score=40.58 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS 522 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~ 522 (575)
++.|..+|..+.+.|++++|+..|+++++++|++
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3578999999999999999999999999999853
No 183
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.75 E-value=0.011 Score=63.58 Aligned_cols=80 Identities=19% Similarity=0.125 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDCSM 567 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~~~l 567 (575)
+++.+.=+...+...|+|++|++++.+.-..-.+....+-.+|.+++++|++++|...|.+.|+.+|+|...+..+..++
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 45666667788899999999999999988888889999999999999999999999999999999999986555555554
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.75 E-value=0.004 Score=46.70 Aligned_cols=38 Identities=21% Similarity=0.419 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA 523 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~ 523 (575)
|+....++.+|.+++++|++++|+..|+++++++|+++
T Consensus 28 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 28 PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 67899999999999999999999999999999999875
No 185
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.73 E-value=0.004 Score=66.00 Aligned_cols=89 Identities=11% Similarity=-0.014 Sum_probs=80.9
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHH
Q 008170 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARV 560 (575)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~ 560 (575)
..|++.+.+--+|..+...|+-++|..+...++..|+.+..+|.-+|.++..-++|++|+.+|..|++++|+|. ..+
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl 115 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL 115 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 34678888899999999999999999999999999999999999999999999999999999999999999998 566
Q ss_pred HHHHHHHHHhhh
Q 008170 561 GYVDCSMLIYLL 572 (575)
Q Consensus 561 ~~~~~~l~~~~~ 572 (575)
..++..+++|..
T Consensus 116 slLQ~QmRd~~~ 127 (700)
T KOG1156|consen 116 SLLQIQMRDYEG 127 (700)
T ss_pred HHHHHHHHhhhh
Confidence 777777777754
No 186
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.72 E-value=0.0061 Score=67.54 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=66.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcccH---HHHHHHHHH
Q 008170 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-FQQAEEDCSKTISLDKKVR---ARVGYVDCS 566 (575)
Q Consensus 492 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~-~~~Ai~~~~~al~l~P~~~---~~~~~~~~~ 566 (575)
....+...++.++|++|++...++++.+|+|..++..+|.++..+++ .++|.+.|..+.+++|++. +.++.++..
T Consensus 5 aLK~Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~ 83 (1238)
T KOG1127|consen 5 ALKSAKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYER 83 (1238)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHc
Confidence 44567788899999999999999999999999999999999999998 9999999999999999988 444554443
No 187
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.70 E-value=0.01 Score=42.40 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Q 008170 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARV 560 (575)
Q Consensus 524 ~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~ 560 (575)
+.++.+|..++++|+|++|.+.++++|+++|+|..+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3578899999999999999999999999999988643
No 188
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.66 E-value=0.031 Score=63.71 Aligned_cols=91 Identities=11% Similarity=-0.043 Sum_probs=82.1
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HH
Q 008170 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---AR 559 (575)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~ 559 (575)
..+++-.+....++..+.-.|++.+|.+.+++.+...|.+..++..+|.++...|++.+|+..+++++.++|++. ..
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~ 489 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERA 489 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence 456777788888999999999999999999999999999999999999999999999999999999999999977 56
Q ss_pred HHHHHHHHHHhhhh
Q 008170 560 VGYVDCSMLIYLLC 573 (575)
Q Consensus 560 ~~~~~~~l~~~~~~ 573 (575)
++.....+++|..+
T Consensus 490 ~~~~al~l~e~~~A 503 (822)
T PRK14574 490 QAETAMALQEWHQM 503 (822)
T ss_pred HHHHHHhhhhHHHH
Confidence 77788888888765
No 189
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0037 Score=58.51 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
|.-+..|.+++.++++.++|+.......+|++++|+.+..++.++++++..+.|++||..+.++..+
T Consensus 41 P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 41 PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 5557789999999999999999999999999999999999999999999999999999999999655
No 190
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.64 E-value=0.023 Score=61.20 Aligned_cols=69 Identities=22% Similarity=0.154 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
.-.++-++..+-..|+|++|++..++||+..|..++.|+.+|.++-+.|++++|.+.++.|-++|+.+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR 262 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence 345577899999999999999999999999999999999999999999999999999999999998765
No 191
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.62 E-value=0.0098 Score=53.64 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCcccHHH---HHHHHHHHH
Q 008170 505 WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG----------CFQQAEEDCSKTISLDKKVRAR---VGYVDCSML 568 (575)
Q Consensus 505 ~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~----------~~~~Ai~~~~~al~l~P~~~~~---~~~~~~~l~ 568 (575)
|++|.+.|......+|.++..++|-|.+++.+- -+++|++=|++||+++|+...+ +|..+..++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999873 3678899999999999998854 444444444
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.013 Score=55.76 Aligned_cols=71 Identities=15% Similarity=0.250 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
.....+++.+..+.-+++|.+|...|++.+..||.++.+.+|+|.|++-+|+..+|++..+.+++..|...
T Consensus 250 ~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 250 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 34567788999999999999999999999999999999999999999999999999999999999999765
No 193
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.58 E-value=0.0093 Score=63.58 Aligned_cols=71 Identities=24% Similarity=0.346 Sum_probs=62.3
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553 (575)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~ 553 (575)
...+.-+..+...|..|..+++|.+|+..|.+|+.+ +|.-+..+.|+|..|.+.|+|++|..+|++|+++-
T Consensus 235 ~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 235 LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 345667777778999999999999999999999976 34457889999999999999999999999999774
No 194
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0042 Score=60.87 Aligned_cols=70 Identities=26% Similarity=0.322 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV 556 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~ 556 (575)
-.+..|.|++-+.+-.|+|..||...++++.++|.+..+|+.-|.|++.++++.+|+..|+..++++-+.
T Consensus 117 lnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 117 LNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 4577889999999999999999999999999999999999999999999999999999999988776543
No 195
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.56 E-value=0.0021 Score=64.42 Aligned_cols=119 Identities=14% Similarity=0.126 Sum_probs=83.8
Q ss_pred cccCCch-hHHhHHHHHHHHhhhhhhhccCCCCCCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 008170 447 TYHGGDK-FLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS--- 522 (575)
Q Consensus 447 g~~~~d~-~ll~~a~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~--- 522 (575)
|..+.|. .-++-|..++..+.+..++.... ..+-+.+-++||.|+-.|+|++||.+-+.-|++....
T Consensus 161 g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr---------~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr 231 (639)
T KOG1130|consen 161 GAFNAEVTSALENAVKFYMENLELSEKLGDR---------LAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR 231 (639)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhhhH---------HhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH
Confidence 4444443 33444555555444443333222 2456678899999999999999999998888876433
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------cHHHHHHHHHHHHHhhhhh
Q 008170 523 ---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK---------VRARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 523 ---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~---------~~~~~~~~~~~l~~~~~~i 574 (575)
-.++.|+|.||.-+++++.|++.|++.+.+--+ .-..+|..+..+.+|+.||
T Consensus 232 AaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI 295 (639)
T KOG1130|consen 232 AAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAI 295 (639)
T ss_pred HHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHH
Confidence 467999999999999999999999998755221 1156777777778887776
No 196
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.55 E-value=0.0033 Score=58.44 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=57.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 498 AAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 498 ~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
...+.++++.|.+.|.+++++.|+....|+..+....+.|+++.|.+.|++.+++||++..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 4568899999999999999999999999999999999999999999999999999998763
No 197
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.54 E-value=0.012 Score=62.87 Aligned_cols=91 Identities=11% Similarity=0.109 Sum_probs=74.2
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Q 008170 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD- 553 (575)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~- 553 (575)
++.|.........+..|..+|+|+.|+..+.+|+++ .|.-.....+.|..|..+++|.+|+..|++|+.+-
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 445777788888999999999999999999999998 56566777789999999999999999999999773
Q ss_pred ----cccH------HHHHHHHHHHHHhhhh
Q 008170 554 ----KKVR------ARVGYVDCSMLIYLLC 573 (575)
Q Consensus 554 ----P~~~------~~~~~~~~~l~~~~~~ 573 (575)
++++ .+++.++...|+|..|
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA 302 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEA 302 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHH
Confidence 2333 4566666666766543
No 198
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.50 E-value=0.025 Score=59.48 Aligned_cols=63 Identities=6% Similarity=0.025 Sum_probs=52.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 495 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
.+..+..+|++++|+..+++.++.+|+++.++..++.+|.+.|+|++|++.+.+..+..+.+.
T Consensus 159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~ 221 (398)
T PRK10747 159 RVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE 221 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH
Confidence 477888888888888888888888888888888888888888888888888888877766544
No 199
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.50 E-value=0.0087 Score=67.68 Aligned_cols=63 Identities=17% Similarity=0.039 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~ 553 (575)
.+++.+|.+|-+.|++++|...|+++|+++|+++.+++|+|..|... +.++|+..+.+|++..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 56667777777777777777777777777777777777777777777 7777777777777653
No 200
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.49 E-value=0.023 Score=60.03 Aligned_cols=65 Identities=8% Similarity=0.061 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 493 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
...+..++++|++++|++.+++.++.+|+++.++...+.++.+.|+|++|++.+.+.++....+.
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~ 221 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD 221 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 33577788888888888888888888888888888888888888888888888888887644333
No 201
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.0086 Score=57.80 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=60.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhhh
Q 008170 499 AFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 499 ~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~~~l~~~~~~i 574 (575)
+.+..+|++||++.+--.+.+|.+-..+.-+|.||+..++|.+|..+|++..++.|+..+ ++++.+..-|..||
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q--YrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQ--YRLYQAQSLYKACI 93 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH--HHHHHHHHHHHhcc
Confidence 467888999999999888889988888889999999999999999999999999887665 55555555555554
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.49 E-value=0.022 Score=53.80 Aligned_cols=72 Identities=18% Similarity=0.081 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGC-----------FQQAEEDCSKTIS 551 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~-----------~~~Ai~~~~~al~ 551 (575)
+-...+.+..|..+++.|+|++|+..|++.++..|++ ..+++.+|.+++++.+ ..+|+..++..++
T Consensus 39 ~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~ 118 (203)
T PF13525_consen 39 PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK 118 (203)
T ss_dssp TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH
Confidence 4556778899999999999999999999999999987 5689999999877642 4589999999999
Q ss_pred hCcccH
Q 008170 552 LDKKVR 557 (575)
Q Consensus 552 l~P~~~ 557 (575)
..|+..
T Consensus 119 ~yP~S~ 124 (203)
T PF13525_consen 119 RYPNSE 124 (203)
T ss_dssp H-TTST
T ss_pred HCcCch
Confidence 999876
No 203
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.39 E-value=0.021 Score=55.02 Aligned_cols=79 Identities=14% Similarity=0.074 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD 564 (575)
Q Consensus 491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~ 564 (575)
.+++.+..+++.|+|.+|.+.|.+-++..|++ +.++|=+|.+++.+|+|++|...|..+++-.|+++ ..+..++
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 38999999999999999999999999999986 68899999999999999999999999999998876 4455555
Q ss_pred HHHHH
Q 008170 565 CSMLI 569 (575)
Q Consensus 565 ~~l~~ 569 (575)
.++++
T Consensus 223 ~~~~~ 227 (262)
T COG1729 223 VSLGR 227 (262)
T ss_pred HHHHH
Confidence 55443
No 204
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0092 Score=60.11 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008170 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554 (575)
Q Consensus 491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P 554 (575)
-|+-.+..+|..++|+.|+.+-.|+|+.+|++..+|..+|..+..+++.++|+-.|+.|..+.|
T Consensus 302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap 365 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP 365 (564)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcch
Confidence 3444445555555555555555555555555555555555555555555555555555555554
No 205
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.33 E-value=0.0066 Score=38.40 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170 525 YYSNRAAAYLELGCFQQAEEDCSKTISLDKKV 556 (575)
Q Consensus 525 ~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~ 556 (575)
+++++|.++.++|++++|+..++++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56777777777777777777777777777753
No 206
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.28 E-value=0.017 Score=56.04 Aligned_cols=77 Identities=12% Similarity=0.090 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~ 562 (575)
-+++....+.+....++|+.++|...|..|+.++|+++.++...|+....-++.-+|-.+|-+||.++|.|.+++..
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 45566667788888999999999999999999999999999999999999999999999999999999998865443
No 207
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.28 E-value=0.0058 Score=37.68 Aligned_cols=32 Identities=34% Similarity=0.458 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 524 ~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
.+++++|.++..++++++|+..++++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35667777777777777777777777777664
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.25 E-value=0.01 Score=45.51 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAA 531 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~ 531 (575)
|++...+..+|..+++.|+|++|++.|+++++.+|++..+...++.
T Consensus 26 p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 26 PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 5678899999999999999999999999999999999888766554
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.23 E-value=0.037 Score=49.08 Aligned_cols=63 Identities=14% Similarity=0.131 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~ 551 (575)
...+...+..+...|++++|+..+++++.++|.+-.+|..+-.+|..+|++.+|++.|+++.+
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 446667888889999999999999999999999999999999999999999999999998853
No 210
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.025 Score=55.26 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Q 008170 505 WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVD 564 (575)
Q Consensus 505 ~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~ 564 (575)
.++.+...+.-|..+|+|++-|..+|.+|+.++++..|...|.+++++.|+|+..++-+.
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~a 197 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLA 197 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 455666778889999999999999999999999999999999999999999996444443
No 211
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.16 E-value=0.0068 Score=39.58 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 525 YYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 525 ~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
+|.++|.+|.++|+|++|++.|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566777777777777777777775544
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.12 E-value=0.0049 Score=48.16 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cccH------HHHHHHHHHHHHhhhhh
Q 008170 520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD----KKVR------ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 520 p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~----P~~~------~~~~~~~~~l~~~~~~i 574 (575)
|+-+.+++++|.+|..+|+|++|+..|++++++. +++. ..+|.++..+|++..|+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 66 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEAL 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3446789999999999999999999999999762 1222 46777777777777664
No 213
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.08 E-value=0.02 Score=60.20 Aligned_cols=71 Identities=11% Similarity=0.055 Sum_probs=47.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH--HHHHHHHHHHHhh
Q 008170 501 KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA--RVGYVDCSMLIYL 571 (575)
Q Consensus 501 ~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~--~~~~~~~~l~~~~ 571 (575)
..++++++++..++.++..|+++..+..+|..+++.++|++|.+.++++++++|++.. .++.++..+|+-.
T Consensus 306 ~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Confidence 3467777777777777777777777777777777777777777777777777776552 4555555444433
No 214
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.06 E-value=0.014 Score=38.06 Aligned_cols=29 Identities=28% Similarity=0.507 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519 (575)
Q Consensus 491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~ 519 (575)
+|.+.|+.+.++|+|++|+++|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47889999999999999999999966553
No 215
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.05 E-value=0.022 Score=64.58 Aligned_cols=51 Identities=18% Similarity=0.174 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 507 KAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 507 ~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
+++++|.+.+...+.+..+++.+|.||-++|++++|...++++|+++|+|+
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~ 150 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNP 150 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccH
Confidence 444444444444445555555555555555555555555555555555555
No 216
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.03 E-value=0.0093 Score=58.32 Aligned_cols=125 Identities=14% Similarity=0.094 Sum_probs=89.5
Q ss_pred cccccCCchhHHhHHHHHHHHhhhh-hhhccCCCCCCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008170 445 FITYHGGDKFLLDTVLDLYDSLQEQ-VNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA 523 (575)
Q Consensus 445 ivg~~~~d~~ll~~a~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~ 523 (575)
+--.|++=-.++..++..|.....+ +-.+.... -+.++.+.++.--.|..||-.++.+-|+.+|++.|++.-.++
T Consensus 283 ld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~v----lk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~sp 358 (478)
T KOG1129|consen 283 LDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLV----LKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSP 358 (478)
T ss_pred hhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHH----HhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCCh
Confidence 5667777778888888776654332 11111111 011233333444456678889999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccH----HHHHHHHHHHHHhhhh
Q 008170 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLD--KKVR----ARVGYVDCSMLIYLLC 573 (575)
Q Consensus 524 ~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~--P~~~----~~~~~~~~~l~~~~~~ 573 (575)
++++|.|.|.+.-++++-++..+++++..- |+.. .++|.+....|++.+|
T Consensus 359 eLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA 414 (478)
T KOG1129|consen 359 ELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLA 414 (478)
T ss_pred HHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHH
Confidence 999999999999999999999999999764 3322 5667777777777665
No 217
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.98 E-value=0.042 Score=58.06 Aligned_cols=89 Identities=13% Similarity=0.037 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA-TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG 561 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~-~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~ 561 (575)
|.....+.-.+..+.++|++++|.+.|.++.+..|++. .+...++..++..+++++|+..+++.++.+|++. ..++
T Consensus 115 ~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~ 194 (409)
T TIGR00540 115 AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAE 194 (409)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34455667789999999999999999999999998875 5666779999999999999999999999999998 4677
Q ss_pred HHHHHHHHhhhhh
Q 008170 562 YVDCSMLIYLLCI 574 (575)
Q Consensus 562 ~~~~~l~~~~~~i 574 (575)
.++...++|..++
T Consensus 195 ~~~~~~~d~~~a~ 207 (409)
T TIGR00540 195 EAYIRSGAWQALD 207 (409)
T ss_pred HHHHHHhhHHHHH
Confidence 8888888887654
No 218
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.97 E-value=0.0029 Score=62.31 Aligned_cols=71 Identities=27% Similarity=0.226 Sum_probs=66.6
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
+|..+..|.+++.++++.++...|+..|..|++++|+.+.-|--|+.++..+++|++|.+|+..+++++-+
T Consensus 144 np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 144 NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 46678889999999999999999999999999999999999999999999999999999999999999754
No 219
>PRK11906 transcriptional regulator; Provisional
Probab=95.97 E-value=0.055 Score=56.19 Aligned_cols=80 Identities=6% Similarity=-0.103 Sum_probs=66.0
Q ss_pred ChhHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 485 SIDASELLKEKGNAAFK---------GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~---------~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
+|..+..|--.+.+++. ..+-.+|.+.-.+|++++|.|+.++..+|.++...++++.|+..+++|+.++||
T Consensus 291 dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn 370 (458)
T PRK11906 291 QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD 370 (458)
T ss_pred CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc
Confidence 45666666666666553 344578899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHH
Q 008170 556 VRARVGYVD 564 (575)
Q Consensus 556 ~~~~~~~~~ 564 (575)
....++..+
T Consensus 371 ~A~~~~~~~ 379 (458)
T PRK11906 371 IASLYYYRA 379 (458)
T ss_pred cHHHHHHHH
Confidence 986544443
No 220
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.011 Score=57.04 Aligned_cols=66 Identities=20% Similarity=0.201 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
.++....+.|...|+.|+|++|++.|+.|++..--++.+-+|.+.|+++.+++..|++...+.++.
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 346778899999999999999999999999999989999999999999999999999988777643
No 221
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.028 Score=56.80 Aligned_cols=80 Identities=20% Similarity=0.143 Sum_probs=71.7
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 008170 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYV 563 (575)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~ 563 (575)
.++.+...|.-+|+.+.+.++.++|+-.|+.|+.+.|-+...|-.+-.||+..+++.||....+.+++.-|++.+.+-.+
T Consensus 329 ~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~ 408 (564)
T KOG1174|consen 329 SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLF 408 (564)
T ss_pred cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 34667889999999999999999999999999999999999999999999999999999999999998888877544333
No 222
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.72 E-value=0.044 Score=55.78 Aligned_cols=73 Identities=21% Similarity=0.023 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
..-.+++++.|..+-.+|+.++|+++|-+.-.+--+++.+++..+.+|..+.+..+|++.+.++..+-|+++.
T Consensus 521 asc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ 593 (840)
T KOG2003|consen 521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPA 593 (840)
T ss_pred hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHH
Confidence 3456789999999999999999999998877776789999999999999999999999999999999999884
No 223
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=95.66 E-value=0.03 Score=55.95 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCcccHH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF-QQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~-~~Ai~~~~~al~l~P~~~~ 558 (575)
....+.-++.+++.+|+|++|.+.+.++++.+|+++..+.|+..|...+|+. +.+.+...+.-+.+|+++.
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 4567888999999999999999999999999999999999999999999998 5666788888889999884
No 224
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.63 E-value=0.026 Score=56.31 Aligned_cols=69 Identities=25% Similarity=0.280 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 489 SELLKEKGNAAFKG-KQWNKAVNYYSEAIKLNG--TS----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 489 a~~~~~~g~~~~~~-g~~~~Ai~~~~~al~~~p--~~----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
+..+.+.|..|.+. +++++|+++|.+|+++-. +. ..++.+.+.++.++++|++|++.|++.....-++.
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~ 189 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN 189 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc
Confidence 44455555555555 666666666666666521 11 34556666666666666666666666666554444
No 225
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.62 E-value=0.029 Score=56.02 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~ 519 (575)
...+.+.+..+.+.++|++|++.|++.....
T Consensus 155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 155 AECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 3445566777777888888888888877654
No 226
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.48 E-value=0.13 Score=39.61 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA---TYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~---~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
..+....++|..++.+.+.++|+..++++++..++.. .++-.+..+|...|+|.+.++...+=+++
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778899999999999999999999999877664 45566778889999999999988776654
No 227
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.46 E-value=0.028 Score=35.39 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS 522 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~ 522 (575)
+++++.|..+++.|++++|++.|++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367889999999999999999999999999974
No 228
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.41 E-value=0.024 Score=42.74 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAA 531 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~ 531 (575)
|++...+...+.++++.|++++|...+.+++..+|+++.++.-++.
T Consensus 22 p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 22 PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 6678899999999999999999999999999999998887776654
No 229
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.37 E-value=0.024 Score=34.67 Aligned_cols=33 Identities=33% Similarity=0.569 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS 522 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~ 522 (575)
..+..+|..++..+++++|+..|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 467889999999999999999999999998863
No 230
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.28 E-value=0.028 Score=55.14 Aligned_cols=72 Identities=15% Similarity=0.061 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
...++.|+|.|-++...|++..|-++|+-+|.-|+++.++++|++..-.+.|+.++|...++.+-.+.|+-.
T Consensus 392 ~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 392 GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 356889999999999999999999999999999999999999999999999999999999999999999754
No 231
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.12 E-value=0.11 Score=41.98 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 508 AVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 508 Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
.+..++++++.+|++..+.+.+|..++..|++++|++-+-++++.++++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~ 56 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE 56 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence 46778899999999999999999999999999999999999999998774
No 232
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.07 E-value=0.087 Score=56.06 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
..+.+.+...|+.++|..+++.|...+..-|.| +....+++.||+++.+.+.|++.+.+|=+.+|.++.
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l 429 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPL 429 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHH
Confidence 357789999999999999999999999876544 788999999999999999999999999999999884
No 233
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.97 E-value=0.17 Score=45.86 Aligned_cols=81 Identities=16% Similarity=0.124 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-----HHHHHHH
Q 008170 491 LLKEKGNAAFKGKQWNKAVNYYSEAIK-LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR-----ARVGYVD 564 (575)
Q Consensus 491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~-~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~-----~~~~~~~ 564 (575)
-...+++.+.+.|+|.+|...|.+++. +--+++..+..++++.+..+++.+|...+++..+.+|... ..+++.+
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 345577777788888888888887774 2346677777777777777777777777777777765432 4455555
Q ss_pred HHHHHhh
Q 008170 565 CSMLIYL 571 (575)
Q Consensus 565 ~~l~~~~ 571 (575)
.+.|+|.
T Consensus 171 aa~g~~a 177 (251)
T COG4700 171 AAQGKYA 177 (251)
T ss_pred HhcCCch
Confidence 5555554
No 234
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=94.77 E-value=0.12 Score=51.51 Aligned_cols=61 Identities=18% Similarity=0.293 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 008170 503 KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYV 563 (575)
Q Consensus 503 g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~ 563 (575)
.++++|.-.|++..+..+.++..++..+.|++.+|+|++|.+.+.++++.+|+++..+...
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNl 241 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANL 241 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 3699999999998887788999999999999999999999999999999999988644443
No 235
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=0.13 Score=49.75 Aligned_cols=69 Identities=26% Similarity=0.358 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
.+.+.+.=+.+.++++++.|+..-.+.+.++|+++.-+..||.+|.++|.+.-|++|++..++..|+.+
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 444556667789999999999999999999999999999999999999999999999999999999877
No 236
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.32 E-value=0.59 Score=41.25 Aligned_cols=86 Identities=19% Similarity=0.108 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC--------------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--------GT--------------SATYYSNRAAAYLELGCFQQAEEDC 546 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--------p~--------------~~~~~~~ra~~~~~l~~~~~Ai~~~ 546 (575)
.+.+...+......++.++++..+.+++.+- +. ...+...++..+...|++++|+..+
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3455566777778888899999999998763 11 1355777788888999999999999
Q ss_pred HHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170 547 SKTISLDKKVR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 547 ~~al~l~P~~~---~~~~~~~~~l~~~~~~i 574 (575)
++++.++|-+. ..+-.++...|++..|+
T Consensus 86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~ 116 (146)
T PF03704_consen 86 QRALALDPYDEEAYRLLMRALAAQGRRAEAL 116 (146)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999876 34444555555555443
No 237
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.26 E-value=0.4 Score=47.74 Aligned_cols=68 Identities=10% Similarity=0.134 Sum_probs=59.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Q 008170 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVG 561 (575)
Q Consensus 494 ~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~ 561 (575)
.++...+..-.|++||+.|++.+.-+|+...+-.+.+.||+|+.-|+-+.+.++--|+.-|+...+..
T Consensus 156 SLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~N 223 (557)
T KOG3785|consen 156 SLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKN 223 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHH
Confidence 35556666677999999999999999999999999999999999999999999999999999885433
No 238
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.26 E-value=0.043 Score=35.25 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=25.5
Q ss_pred HHHHHHhCcccH---HHHHHHHHHHHHhhhhhC
Q 008170 546 CSKTISLDKKVR---ARVGYVDCSMLIYLLCIV 575 (575)
Q Consensus 546 ~~~al~l~P~~~---~~~~~~~~~l~~~~~~i~ 575 (575)
|+++|+++|+++ ..+|.++...|++..|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999 577888888899888764
No 239
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.20 E-value=0.3 Score=34.86 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008170 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAA 532 (575)
Q Consensus 491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~ 532 (575)
.++-.+..+++.|+|++|.++.+.+|+++|++..+..-+..+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 456788889999999999999999999999998876655444
No 240
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.09 E-value=0.15 Score=48.86 Aligned_cols=104 Identities=13% Similarity=0.031 Sum_probs=76.2
Q ss_pred CchhHHhHHHHHHHHhhhhhhh----ccCCCCCCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008170 451 GDKFLLDTVLDLYDSLQEQVNI----ASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYY 526 (575)
Q Consensus 451 ~d~~ll~~a~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~ 526 (575)
+|..|.++|+++-.......+. +..+.. ++..+.....+.-++++.+.+++|++|......+|..++++++.+
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~---s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEEL---SEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHH---hcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 6778888888876654332110 011111 122334456777899999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHH-HHHHHhCcccH
Q 008170 527 SNRAAAYLELGCFQQAEEDC-SKTISLDKKVR 557 (575)
Q Consensus 527 ~~ra~~~~~l~~~~~Ai~~~-~~al~l~P~~~ 557 (575)
.|.-.+-..+|+..++.+.+ .+....+|+++
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 99999999999988877654 45556678776
No 241
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=93.92 E-value=0.2 Score=53.75 Aligned_cols=69 Identities=10% Similarity=-0.035 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
.+.|....+...-+++.++|++.++++|+.-|++..+|..+|+++.++++.+.|.+.|...+++.|+..
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i 719 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI 719 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc
Confidence 456666777777788889999999999999899999999999999999999999998988888888765
No 242
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.89 E-value=0.14 Score=34.14 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 523 ~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
+..+.|+|.+|..+|++++|+..+++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356778888888888888888888888765
No 243
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.87 E-value=0.8 Score=38.40 Aligned_cols=61 Identities=11% Similarity=0.219 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGT------------SATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 492 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------------~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
....|...++.|-|++|...|.+|.+.... ++-++.-++-++..+|+|++++...+++|..
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 345677788899999999999999987532 2567888999999999999999999999843
No 244
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.66 E-value=0.43 Score=38.74 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=52.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHH
Q 008170 498 AAFKGKQWNKAVNYYSEAIKLNGT---------SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK--VRARVGYVDCS 566 (575)
Q Consensus 498 ~~~~~g~~~~Ai~~~~~al~~~p~---------~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~--~~~~~~~~~~~ 566 (575)
...+.++|.+|++.+.+.++.... ...+..+++.++..+|++++|+..+++++++-.+ +...+..+...
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~ 86 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSW 86 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 456889999999998888876422 2467889999999999999999999999988543 33334444433
No 245
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.62 E-value=0.52 Score=39.15 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=59.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCcccHHHH
Q 008170 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSA---TYYSNRAAAYLELGC-----------FQQAEEDCSKTISLDKKVRARV 560 (575)
Q Consensus 495 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~---~~~~~ra~~~~~l~~-----------~~~Ai~~~~~al~l~P~~~~~~ 560 (575)
++..++++|++-+|++..++.+...+++. .++..-|.+++++.. .-.+++.+.++..+.|+....+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 56778899999999999999998877664 566777777766532 4568888999999999887655
Q ss_pred HHHHHH---HHHhhhhh
Q 008170 561 GYVDCS---MLIYLLCI 574 (575)
Q Consensus 561 ~~~~~~---l~~~~~~i 574 (575)
..+... ...|..|+
T Consensus 82 ~~la~~l~s~~~Ykk~v 98 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAV 98 (111)
T ss_pred HHHHHHhhhHHHHHHHH
Confidence 555555 55666554
No 246
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.55 E-value=0.16 Score=51.49 Aligned_cols=62 Identities=24% Similarity=0.365 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNG------TSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p------~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
.|.++||+||-.++|++|+++-+.=|.+.. -.+..--|+|..+-.+|.|++|+.+|.+-|.+
T Consensus 57 IYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~ 124 (639)
T KOG1130|consen 57 IYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDF 124 (639)
T ss_pred HHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHH
Confidence 344455555555555555544333332210 11233344555555555555555555555544
No 247
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.46 E-value=0.14 Score=50.96 Aligned_cols=61 Identities=21% Similarity=0.267 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~a 549 (575)
++.+.| .|-++|..|+|++|+..|+-+.+.+--+.+++.|++-|++-+|.|.||.....++
T Consensus 57 ~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 57 DSLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 345555 5788999999999999999999877677899999999999999999999877665
No 248
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.31 E-value=1.3 Score=40.74 Aligned_cols=68 Identities=18% Similarity=0.117 Sum_probs=58.2
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
+.+....+.++|+-|.+.|++++|++.|.++.+..... ...+++.-.+.+..++|........++-.+
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35567889999999999999999999999998876432 567888889999999999999999998654
No 249
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.16 E-value=0.15 Score=33.64 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLD 553 (575)
Q Consensus 524 ~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~ 553 (575)
.+|..+|.+.+..++|++|+.||+++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467788889999999999999999998774
No 250
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.98 E-value=0.61 Score=47.55 Aligned_cols=85 Identities=14% Similarity=0.176 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT-------------S-----ATYYSNRAAAYLELGCFQQAEEDCSKTI 550 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-------------~-----~~~~~~ra~~~~~l~~~~~Ai~~~~~al 550 (575)
.+.....+...|++++|..|+-.|..||++..+ + .-+--.+..||+++++.+-|+...-+.|
T Consensus 176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence 344445677788888888888888888887421 1 1235678899999999999999999999
Q ss_pred HhCcccH---HHHHHHHHHHHHhhhh
Q 008170 551 SLDKKVR---ARVGYVDCSMLIYLLC 573 (575)
Q Consensus 551 ~l~P~~~---~~~~~~~~~l~~~~~~ 573 (575)
-++|.+. ...+-+...+.+|..|
T Consensus 256 ~lnP~~frnHLrqAavfR~LeRy~eA 281 (569)
T PF15015_consen 256 NLNPSYFRNHLRQAAVFRRLERYSEA 281 (569)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999877 3455666667777654
No 251
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.98 E-value=0.21 Score=52.86 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008170 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554 (575)
Q Consensus 494 ~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P 554 (575)
+++-++|+.++.++|+..++ .+++.+..+..-+|++++++++|++|+..|++.++-+-
T Consensus 84 EKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred HHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 44455555555555555554 33344444444455555555555555555555544443
No 252
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.97 E-value=0.25 Score=32.80 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~ 519 (575)
+..+.+.|..+..+|+|++|+..+.+++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4678899999999999999999999999874
No 253
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.86 E-value=0.37 Score=51.18 Aligned_cols=86 Identities=19% Similarity=0.172 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~---~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~ 562 (575)
|++..+++-.-.++.+.++|++|+.. |+.++- +....+.++.|++++++.++|+.+++-+=+++++--.-+++
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~----ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQ 118 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKL----IKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQ 118 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHH----HHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHH
Confidence 56666777777777888888888732 444432 22333789999999999999999988222222222256788
Q ss_pred HHHHHHHhhhhhC
Q 008170 563 VDCSMLIYLLCIV 575 (575)
Q Consensus 563 ~~~~l~~~~~~i~ 575 (575)
+.+.+++|+.|++
T Consensus 119 vlYrl~~ydeald 131 (652)
T KOG2376|consen 119 VLYRLERYDEALD 131 (652)
T ss_pred HHHHHhhHHHHHH
Confidence 8899999999873
No 254
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.80 E-value=1.3 Score=42.63 Aligned_cols=69 Identities=16% Similarity=0.149 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCcccH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELG--------CFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~--------~~~~Ai~~~~~al~l~P~~~ 557 (575)
-+...+.+-.+++.++|++|+...++-+.+.|.+ .-+++.+|++++..- --.+|+.+++..++.-|+..
T Consensus 71 ~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 71 EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 5677889999999999999999999999999876 457899999988752 25788999999999999866
No 255
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.76 E-value=2 Score=38.41 Aligned_cols=71 Identities=10% Similarity=-0.156 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
-...+.+......+.++.+++...+...--+.|+.+.+-..-+..++..++|.+|+..++.+..-.|..+.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~ 79 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY 79 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH
Confidence 34555666666666666666666666666666666666666666666666666666666666655555553
No 256
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.75 E-value=0.78 Score=44.16 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=60.4
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 008170 491 LLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYV 563 (575)
Q Consensus 491 ~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~ 563 (575)
.+.++++.+.+ .+++++|.-.|++.-+..|..+...+..+.|++.+++|++|...++.+|..+++++..+.+.
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 44445554443 45589999999999987788899999999999999999999999999999999999665554
No 257
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.65 E-value=0.79 Score=39.41 Aligned_cols=70 Identities=7% Similarity=0.036 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 489 SELLKEKGNAAFKGKQ---WNKAVNYYSEAIK-LNGT-SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~---~~~Ai~~~~~al~-~~p~-~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
.+..++.+-.+.+..+ -++-|..++..++ -.|. .-...+.++..++++++|+.++.+++..|+.+|+|.+
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 3455666666665444 5678899999997 4443 3677888999999999999999999999999999985
No 258
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.15 E-value=0.76 Score=51.16 Aligned_cols=84 Identities=14% Similarity=0.043 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR--ARVGYVD 564 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~--~~~~~~~ 564 (575)
+..-+..-+|..+++.|++++|..+++..-...+++-..+--+-.||..++++++|+..|+++++.+|+.. ..+..++
T Consensus 41 n~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmay 120 (932)
T KOG2053|consen 41 NALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAY 120 (932)
T ss_pred CcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHH
Confidence 33444445788899999999999777766666778888888899999999999999999999999999833 3344444
Q ss_pred HHHHHh
Q 008170 565 CSMLIY 570 (575)
Q Consensus 565 ~~l~~~ 570 (575)
...+.|
T Consensus 121 vR~~~y 126 (932)
T KOG2053|consen 121 VREKSY 126 (932)
T ss_pred HHHHHH
Confidence 444443
No 259
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=91.31 E-value=0.74 Score=46.66 Aligned_cols=65 Identities=32% Similarity=0.385 Sum_probs=42.6
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI 550 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al 550 (575)
.|+++..+...|..+++++.|.+|-..++.|++..| +..-|..+|.++.++|+.++|...+++++
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 344456666677777777777777777777776654 34456667777777777777777666665
No 260
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=91.23 E-value=0.86 Score=46.23 Aligned_cols=71 Identities=10% Similarity=0.001 Sum_probs=60.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHH
Q 008170 499 AFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR--ARVGYVDCSMLI 569 (575)
Q Consensus 499 ~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~--~~~~~~~~~l~~ 569 (575)
..+-+++..-++..++.++..|+++.+++.+|..+++.+.|.+|...++.+++..|+.. .-+++.+..+|+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGE 376 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCC
Confidence 35678888999999999999999999999999999999999999999999999998644 445555555444
No 261
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=91.07 E-value=0.76 Score=49.50 Aligned_cols=72 Identities=15% Similarity=-0.013 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
|.....|..+|..+.++++.+.|-+.|.+.++..|.+..+|..++..-.+.++...|...++++...||++.
T Consensus 682 p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 682 PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA 753 (913)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence 344556788999999999999999999999999999999999999999999999999999999999999987
No 262
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.00 E-value=2.5 Score=35.58 Aligned_cols=65 Identities=14% Similarity=0.073 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIK-------LNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~-------~~p~~----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
++-.+--+...+...|+|++++..-.++|. ++.+. ..+.++|+.++..+|+.++|+..|+++.+.
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 455566678888999999999888877774 44443 556789999999999999999999998654
No 263
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.94 E-value=0.92 Score=48.69 Aligned_cols=70 Identities=14% Similarity=0.085 Sum_probs=59.9
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT----SATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P 554 (575)
-|+-+--++.+|..+..+|+.++|++.|++++....+ ...+++.++.++.-+.+|++|..++.+.++.+.
T Consensus 263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK 336 (468)
T ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 3566777889999999999999999999999954322 256799999999999999999999999998653
No 264
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=90.90 E-value=1.5 Score=33.79 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-------NGTSAT 524 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-------~p~~~~ 524 (575)
+.+..+..++..+-++|+|++|+.+|+++|++ .|++..
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 45677888999999999999999999998864 566654
No 265
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.87 E-value=1 Score=43.22 Aligned_cols=89 Identities=16% Similarity=0.148 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAI----KLNG--TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR-- 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al----~~~p--~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~-- 557 (575)
+.+.......|...++.|+.+.|...+++.= +++. ..-....|.+.+|...++|.+|...+++++..||.++
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence 4556677889999999999999988888433 3332 3356788999999999999999999999999999877
Q ss_pred -HHHHHHHHHHHHhhhhh
Q 008170 558 -ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 558 -~~~~~~~~~l~~~~~~i 574 (575)
...+.|+..+|+...||
T Consensus 289 ~NnKALcllYlg~l~DAi 306 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDAL 306 (366)
T ss_pred hchHHHHHHHHHHHHHHH
Confidence 46677777777776654
No 266
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=90.47 E-value=0.58 Score=49.60 Aligned_cols=66 Identities=20% Similarity=0.197 Sum_probs=62.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 492 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
+.++++.+.+.+-..+|-..+.+++.++-..+..++-.|..|+.+++.+.|++.+++|++++|++.
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCP 710 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCCh
Confidence 568899999999999999999999999988899999999999999999999999999999999988
No 267
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.12 E-value=1.7 Score=42.59 Aligned_cols=71 Identities=11% Similarity=-0.000 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHH----------------------------------HHHhCCCCHHHHHHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSE----------------------------------AIKLNGTSATYYSNRAAA 532 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~----------------------------------al~~~p~~~~~~~~ra~~ 532 (575)
+........+.++...|+.++|...+.. .+..+|++..+.+.++..
T Consensus 166 ~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~ 245 (304)
T COG3118 166 ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQ 245 (304)
T ss_pred ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3355555666677777777655444333 223479999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 533 YLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 533 ~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
+...|++++|++.+-..++.|-.+.
T Consensus 246 ~~~~g~~e~Ale~Ll~~l~~d~~~~ 270 (304)
T COG3118 246 LHLVGRNEAALEHLLALLRRDRGFE 270 (304)
T ss_pred HHHcCCHHHHHHHHHHHHHhccccc
Confidence 9999999999999999888876544
No 268
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.07 E-value=2.3 Score=38.96 Aligned_cols=58 Identities=22% Similarity=0.313 Sum_probs=41.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 498 AAFKGKQWNKAVNYYSEAIKLNG---TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 498 ~~~~~g~~~~Ai~~~~~al~~~p---~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
.++..+++++|+..|.+++..+| .....+..++..+...+++++++..+.++++..++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 67777777777777777777665 34556666666666777777777777777777776
No 269
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=89.81 E-value=0.75 Score=48.25 Aligned_cols=72 Identities=21% Similarity=0.004 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNAAFK---GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~---~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
+.....|-+++.++++ .|+.-.|+.....|++++|....+++.++.++..++++.+|+++...+....|.+.
T Consensus 405 ~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 405 PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 5556677788888877 35667899999999999999999999999999999999999998888888888554
No 270
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.81 E-value=4.1 Score=37.28 Aligned_cols=69 Identities=28% Similarity=0.343 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT-SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
.....+...+..+...+++++|+..+.++++..+. ....+.+++.++...+++++|+..+.+++...|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 165 ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 34555666666677888888888888888888888 6888888888888888888888888888888876
No 271
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=88.79 E-value=2.9 Score=38.17 Aligned_cols=84 Identities=8% Similarity=-0.032 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhCcccH-HHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT----ISLDKKVR-ARVGYV 563 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~a----l~l~P~~~-~~~~~~ 563 (575)
+.-..-.|..+-.+|+|++|...|+.++...|. +.+....+.-+.++|+..+|-..+... .+-.|.+. ..++.+
T Consensus 160 pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H~rkh~reW~ 238 (251)
T COG4700 160 PDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPHYRKHHREWI 238 (251)
T ss_pred CCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 334455677888888888888888888888764 555666677788888777766554443 33344433 345556
Q ss_pred HHHHHHhhhh
Q 008170 564 DCSMLIYLLC 573 (575)
Q Consensus 564 ~~~l~~~~~~ 573 (575)
..+-++..++
T Consensus 239 ~~A~~~~~qs 248 (251)
T COG4700 239 KTANERLKQS 248 (251)
T ss_pred HHHHHHHHhh
Confidence 5555554443
No 272
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.65 E-value=1.9 Score=39.75 Aligned_cols=67 Identities=15% Similarity=0.048 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
-.-.+.+.+.+++|++++|+..++..-.- ...+..--.||.+++..|+-++|...|+++++.+++..
T Consensus 127 l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 127 LAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 34456899999999999999887654322 12345567799999999999999999999999986544
No 273
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.25 E-value=3.5 Score=39.10 Aligned_cols=66 Identities=24% Similarity=0.189 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLE-LGCFQQAEEDCSKTISL 552 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~-l~~~~~Ai~~~~~al~l 552 (575)
.+.+..|-+.+|+| +..+.++|++++.++|++--+- +..+...|..|.. +.++++||.+|+++-+.
T Consensus 71 hDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 71 HDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred hhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34455555555544 4457888888888888774332 3334456666664 37777777777777554
No 274
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.99 E-value=2.2 Score=42.51 Aligned_cols=72 Identities=15% Similarity=0.072 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-NGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
|.+..+++---..+|-.|+...-...+.+.+.. +++. .-+.-..+.++...|-|++|.+..++++++|+.+-
T Consensus 134 PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~ 209 (491)
T KOG2610|consen 134 PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDC 209 (491)
T ss_pred chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcch
Confidence 455555665666666677777666777776665 5555 33344556666677777777777777777777544
No 275
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=87.77 E-value=2 Score=27.92 Aligned_cols=30 Identities=13% Similarity=0.314 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHHhCC
Q 008170 491 LLKEKGNAAFKGKQWNKAVNY--YSEAIKLNG 520 (575)
Q Consensus 491 ~~~~~g~~~~~~g~~~~Ai~~--~~~al~~~p 520 (575)
.+...|-.++.+|+|++|++. |.-+..+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 344445555555555555555 224444444
No 276
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.62 E-value=0.98 Score=29.76 Aligned_cols=30 Identities=13% Similarity=0.469 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~ 519 (575)
+.|..+|..-+..++|++|+..|.+++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999873
No 277
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=87.58 E-value=0.99 Score=49.75 Aligned_cols=87 Identities=26% Similarity=0.368 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcccHH--
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLEL--GCFQQAEEDCSKTISLDKKVRA-- 558 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~ra~~~~~l--~~~~~Ai~~~~~al~l~P~~~~-- 558 (575)
..+..++..||.+|+.++|.+|...|..++.+-|.+ +..+.|.+.||+.+ ++|.+++.+++-++...|..-+
T Consensus 51 ~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~L 130 (748)
T KOG4151|consen 51 SRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKAL 130 (748)
T ss_pred HHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHH
Confidence 335556677788888888888777777777776632 55677777777654 5777888888888877776552
Q ss_pred -HHHHHHHHHHHhhhh
Q 008170 559 -RVGYVDCSMLIYLLC 573 (575)
Q Consensus 559 -~~~~~~~~l~~~~~~ 573 (575)
.+.+++.++.++.++
T Consensus 131 l~r~~~y~al~k~d~a 146 (748)
T KOG4151|consen 131 LKRARKYEALNKLDLA 146 (748)
T ss_pred hhhhhHHHHHHHHHHH
Confidence 233455555554443
No 278
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=87.41 E-value=3.4 Score=33.20 Aligned_cols=62 Identities=10% Similarity=0.054 Sum_probs=40.8
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS--ATYYSNRAAAYLELGCFQQAEEDC 546 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~--~~~~~~ra~~~~~l~~~~~Ai~~~ 546 (575)
+|++....+..+..++..|+|++|++.+-+.++.++++ -.+.-.+=.++..+|.-+.....|
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~ 81 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEY 81 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHH
Confidence 47788999999999999999999999999999998765 333333334444444433333333
No 279
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=87.11 E-value=0.95 Score=45.38 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-HHHHHHHH
Q 008170 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR-ARVGYVDC 565 (575)
Q Consensus 493 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~-~~~~~~~~ 565 (575)
.-.|+++...+.|+++++.|++|+++.-++ ..++..++..|-.++++++|+-...+|.++--+.. ..+...+.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 347888889999999999999999885332 45788999999999999999999999998855433 33334444
Q ss_pred HHHHhhhhh
Q 008170 566 SMLIYLLCI 574 (575)
Q Consensus 566 ~l~~~~~~i 574 (575)
++..|.+++
T Consensus 206 ~~~lyhmaV 214 (518)
T KOG1941|consen 206 AMSLYHMAV 214 (518)
T ss_pred HHHHHHHHH
Confidence 444454443
No 280
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=86.91 E-value=2.1 Score=27.79 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCccc
Q 008170 524 TYYSNRAAAYLELGCFQQAEED--CSKTISLDKKV 556 (575)
Q Consensus 524 ~~~~~ra~~~~~l~~~~~Ai~~--~~~al~l~P~~ 556 (575)
+.++..|..+...|++++|++. |.-+..++++|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4577889999999999999999 55888888764
No 281
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.80 E-value=2.7 Score=41.27 Aligned_cols=60 Identities=12% Similarity=0.093 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~ 548 (575)
.+....++......+++.+|...|..+++.+|++..+...++.||...|+.++|...+..
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 344566888999999999999999999999999999999999999999999888776554
No 282
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=86.80 E-value=0.44 Score=47.58 Aligned_cols=67 Identities=19% Similarity=0.141 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
...+.+...++.+.|..|+..-..+++.++....+++.|++.++.+.++++|++++..+.+.+|++.
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~ 343 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDK 343 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchH
Confidence 3445777888999999999999999998889999999999999999999999999999999999877
No 283
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=86.61 E-value=2.6 Score=44.33 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT--SATYYSNRAAAYLELGCFQQAEEDCSKTI 550 (575)
Q Consensus 491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--~~~~~~~ra~~~~~l~~~~~Ai~~~~~al 550 (575)
.-...+.++.+.|+.++|++.|...++..|. +..++.|+-.+++.+++|.++...+.|-=
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 4456899999999999999999999988775 46799999999999999999988777753
No 284
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=86.52 E-value=2.3 Score=37.30 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~ 539 (575)
.+...+++..++.+|+|.-|++..+.++..+|++..+..-++.++.+++.-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 456778899999999999999999999999999999999999988777643
No 285
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.30 E-value=9.9 Score=33.52 Aligned_cols=68 Identities=12% Similarity=-0.071 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
..+.+.........+.+++...+...--+.|+.+.+-.--+..++..|+|.+|+..++....-.+..+
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p 78 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP 78 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch
Confidence 34444444555555666655555555555666666666666666666666666666666555544444
No 286
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.26 E-value=1.1 Score=26.52 Aligned_cols=23 Identities=26% Similarity=0.015 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 008170 525 YYSNRAAAYLELGCFQQAEEDCS 547 (575)
Q Consensus 525 ~~~~ra~~~~~l~~~~~Ai~~~~ 547 (575)
+++++|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566666666666666665544
No 287
>PLN03218 maturation of RBCL 1; Provisional
Probab=84.28 E-value=5.6 Score=47.13 Aligned_cols=63 Identities=13% Similarity=0.032 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-GTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
..|...-..|.+.|++++|++.|++..+.+ +.+...|+.+...|.+.|++++|++.|++..+.
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 445556666777777777777777777665 345566777777777777777777777776654
No 288
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.08 E-value=6.4 Score=38.77 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
....+..+...+...++++.++..+++.+..+|-+-.+|..+-.+|++.|+...|+..|++.-++
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 35677888999999999999999999999999999999999999999999999999999998663
No 289
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=83.81 E-value=6.2 Score=41.02 Aligned_cols=62 Identities=18% Similarity=0.130 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~a 549 (575)
++.......+.-+|.+|+|.++..+-....+++| ++.+|.-+|.|.+..++|+||-.++...
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3444555677778999999999999999999999 9999999999999999999999877543
No 290
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.77 E-value=1.5 Score=45.74 Aligned_cols=70 Identities=13% Similarity=0.094 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--------C---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIK-L--------N---------GTSATYYSNRAAAYLELGCFQQAEEDCSKT 549 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~-~--------~---------p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~a 549 (575)
....|.|.|..+|+.+.|.-++.+|.+|++ . . -+..++.||.|..|+..|++-.|.++|.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 456678999999999999999999999996 1 1 123678999999999999999999999999
Q ss_pred HHhCcccH
Q 008170 550 ISLDKKVR 557 (575)
Q Consensus 550 l~l~P~~~ 557 (575)
++.--.++
T Consensus 362 v~vfh~nP 369 (696)
T KOG2471|consen 362 VHVFHRNP 369 (696)
T ss_pred HHHHhcCc
Confidence 87755555
No 291
>PRK04841 transcriptional regulator MalT; Provisional
Probab=83.00 E-value=4.6 Score=47.35 Aligned_cols=63 Identities=13% Similarity=-0.052 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-----ATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
......+..++..|++++|...+.++++..+.. ..++.+++.++...|++++|...+++++..
T Consensus 453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~ 520 (903)
T PRK04841 453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQM 520 (903)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334446677777777777777777777644332 234566777777777777777777777755
No 292
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=82.79 E-value=7.5 Score=36.91 Aligned_cols=67 Identities=19% Similarity=0.136 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170 487 DASELLKEKGNAAFKGKQ-------WNKAVNYYSEAIKLNG------TSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~-------~~~Ai~~~~~al~~~p------~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~ 553 (575)
+.+..+...+-.|..+++ +.+|++.|.++++.+. +...+.+..|..+.++|++++|+..+.+++...
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 556666666666666666 4667777777776542 236788999999999999999999999999763
No 293
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=82.51 E-value=4.8 Score=39.60 Aligned_cols=60 Identities=17% Similarity=0.107 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q 008170 508 AVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDCSM 567 (575)
Q Consensus 508 Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~~~l 567 (575)
|..+|.+|+.+.|++-..|+.+|.++...++.-+|+-.|-|++...--+..+...+...+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf 60 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLF 60 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999865433444444444333
No 294
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=82.38 E-value=12 Score=31.73 Aligned_cols=81 Identities=15% Similarity=0.125 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHH----HH
Q 008170 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---------------ATYYSNRAAAYLELGCFQQAEEDCSKT----IS 551 (575)
Q Consensus 491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---------------~~~~~~ra~~~~~l~~~~~Ai~~~~~a----l~ 551 (575)
.+...|+..++++++-.++-+|++|+.+..+- ...-.|+|..+..+|+.+=.+++++-| +.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 46678999999999999999999999763211 233678999999999999889887654 56
Q ss_pred hCcccH--------HHHHHHHHHHHHhh
Q 008170 552 LDKKVR--------ARVGYVDCSMLIYL 571 (575)
Q Consensus 552 l~P~~~--------~~~~~~~~~l~~~~ 571 (575)
+-|+.+ ..+|-+..++.+|.
T Consensus 83 LiPQCp~~~C~afi~sLGCCk~ALl~F~ 110 (140)
T PF10952_consen 83 LIPQCPNTECEAFIDSLGCCKKALLDFM 110 (140)
T ss_pred hccCCCCcchHHHHHhhhccHHHHHHHH
Confidence 667644 34555555555554
No 295
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=82.15 E-value=9 Score=38.06 Aligned_cols=70 Identities=11% Similarity=0.112 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 488 ASELLKEKGNAAFK-GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 488 ~a~~~~~~g~~~~~-~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
....|...+...++ .++.+.|...|+.+++.-|.+...|......+.++++.+.|...|++++..-|...
T Consensus 34 ~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 34 TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp -THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchh
Confidence 35678888888777 67777799999999999999999999999999999999999999999997755433
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.76 E-value=18 Score=32.47 Aligned_cols=69 Identities=13% Similarity=0.020 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
|+..+.-.-.|..+.+.|+|.+|+..++...+-.|..+.+-..++.|+..+++..= ..+.+++++..++
T Consensus 41 P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W-r~~A~evle~~~d 109 (160)
T PF09613_consen 41 PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW-RRYADEVLESGAD 109 (160)
T ss_pred CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHhcCCC
Confidence 44455566689999999999999999999999899999888899999999988543 3446777877653
No 297
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=81.60 E-value=11 Score=29.31 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 518 (575)
...+..+..+|..+-+.|+|++|+.+|.++|+.
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 345777888999999999999999999998864
No 298
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=81.38 E-value=3.9 Score=30.88 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 518 (575)
+.+..+.++|..+-+.|+|++|+++|+++++.
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35667788888888999999999999988864
No 299
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.31 E-value=13 Score=34.92 Aligned_cols=63 Identities=11% Similarity=0.034 Sum_probs=57.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 495 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
-...+++.+..++||....+-++-+|.++.....+-+.+.-.|+|++|...++-+-+++|++.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 345678899999999999999999999999888888999999999999999999999999876
No 300
>PLN03218 maturation of RBCL 1; Provisional
Probab=80.64 E-value=9.9 Score=45.11 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170 493 KEKGNAAFKGKQWNKAVNYYSEAIKLN-GTSATYYSNRAAAYLELGCFQQAEEDCSKTI 550 (575)
Q Consensus 493 ~~~g~~~~~~g~~~~Ai~~~~~al~~~-p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al 550 (575)
......|.+.|++++|++.|++..+.. ..+...|+.+...|.+.|++++|++.+++..
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333444444444444444444443321 1123344444455555555555555555443
No 301
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=80.53 E-value=4.1 Score=46.30 Aligned_cols=56 Identities=16% Similarity=0.073 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 493 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~ 551 (575)
....+.|.+.|++++|.+.|++..+ .+...|+.+...|.+.|+.++|++.+++.++
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555566666666666655432 2344566666666666666666666666554
No 302
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=80.27 E-value=4.3 Score=46.13 Aligned_cols=64 Identities=9% Similarity=-0.080 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
...|......+.+.|+++.|...+++.++++|++...|..+..+|.+.|++++|.+.+++..+.
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 3456677777778888888888888888888887777888888888888888888887776544
No 303
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=80.26 E-value=6.5 Score=42.23 Aligned_cols=74 Identities=12% Similarity=0.057 Sum_probs=61.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-------HHHHHHHHHHHHhhhh
Q 008170 501 KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR-------ARVGYVDCSMLIYLLC 573 (575)
Q Consensus 501 ~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~-------~~~~~~~~~l~~~~~~ 573 (575)
...+.+.|.+.+.+..+.-|+....++..|..+...|+.++|++.+++++....++. .-++.++..+.+|..|
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 356678899999999999999999999999999999999999999999996544433 4566667777777766
Q ss_pred h
Q 008170 574 I 574 (575)
Q Consensus 574 i 574 (575)
.
T Consensus 325 ~ 325 (468)
T PF10300_consen 325 A 325 (468)
T ss_pred H
Confidence 4
No 304
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=80.11 E-value=12 Score=40.21 Aligned_cols=80 Identities=15% Similarity=-0.112 Sum_probs=63.1
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCcccHHHHH
Q 008170 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK-TISLDKKVRARVG 561 (575)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~-al~l~P~~~~~~~ 561 (575)
+.+++-....+ +...+...++...++......+..+|++..++.|++.+....+....++.+..+ +.+..|+|...++
T Consensus 62 ~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 140 (620)
T COG3914 62 DVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLG 140 (620)
T ss_pred CCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHh
Confidence 34455545555 677778888899999999999999999999999999999988877776666666 8999999885444
Q ss_pred HH
Q 008170 562 YV 563 (575)
Q Consensus 562 ~~ 563 (575)
..
T Consensus 141 ~~ 142 (620)
T COG3914 141 HL 142 (620)
T ss_pred hH
Confidence 44
No 305
>PRK04841 transcriptional regulator MalT; Provisional
Probab=80.10 E-value=5.5 Score=46.71 Aligned_cols=65 Identities=12% Similarity=0.035 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNG------TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p------~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
.+...+..+...|++++|+..|+++++... ....++..+|.++.++|++++|...+.+++++...
T Consensus 693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 693 QWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 356788999999999999999999998632 23567889999999999999999999999988654
No 306
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.67 E-value=10 Score=36.26 Aligned_cols=67 Identities=22% Similarity=0.159 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
...+..|...++.+...++|++|-.++.+|++-..++ +.+|-.-+....++.++.|++..++++..+
T Consensus 28 dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 28 DGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL 100 (308)
T ss_pred hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456667777778888899999999999999654433 455666667777778888888888887766
No 307
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.66 E-value=25 Score=33.50 Aligned_cols=72 Identities=25% Similarity=0.296 Sum_probs=55.5
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN----G--TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~----p--~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
+...+.++.+..-+|.|--.++|..|=..|-++-++. . +.+..|..-+.||-+. +.++|+.++++++++-.+
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~ 105 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTD 105 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHh
Confidence 3445666777777788888899999999999987663 1 2366788888887665 999999999999988543
No 308
>PRK10941 hypothetical protein; Provisional
Probab=79.02 E-value=4.1 Score=40.13 Aligned_cols=51 Identities=12% Similarity=0.086 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 524 ~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~~~i 574 (575)
....|+-.+|.+.++++.|+.+.+..+.++|+++ ..+|.++..++.+..|+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~ 235 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVAL 235 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 4577888999999999999999999999999988 56788888877776654
No 309
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=78.75 E-value=12 Score=37.75 Aligned_cols=67 Identities=22% Similarity=0.216 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT----S------ATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~ 553 (575)
-+.+.+-.+|..+-+.++|++|+-+..+|.++.-. + ..+++..+.++.++|+..+|.++|+++.++.
T Consensus 160 LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 160 LELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred eeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 34567778899999999999999999999987422 1 4567888999999999999999999997763
No 310
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.68 E-value=25 Score=35.62 Aligned_cols=53 Identities=8% Similarity=-0.037 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 505 WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 505 ~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
.+.-+..|++||+.+|++..++..+=.+..+..+-++..+-.++++..+|++.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~ 99 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSP 99 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCh
Confidence 46678899999999999999988888888899999999999999999999877
No 311
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.37 E-value=5.1 Score=31.02 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 518 (575)
..+..+..++..+=+.|+|++|+.+|.++|+.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45667788899999999999999999999975
No 312
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=78.11 E-value=8.1 Score=43.44 Aligned_cols=76 Identities=13% Similarity=-0.002 Sum_probs=59.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhh
Q 008170 498 AAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYLLC 573 (575)
Q Consensus 498 ~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~~~ 573 (575)
.....++|.+|+...++.++..|+...+....|..+.++|+.++|...++..-.+.+++. ..+-.++..++++..+
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 346778999999999999999999999999999999999999999965555545555544 4555666666666554
No 313
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=78.05 E-value=19 Score=38.08 Aligned_cols=71 Identities=8% Similarity=0.068 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcccHH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-FQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~-~~~Ai~~~~~al~l~P~~~~ 558 (575)
+...|.+...-.-+.+.|.+--..|.+++...|+++.+|..-|.=.+..+. .+.|...+.++|+.+|+++.
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~ 175 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPK 175 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChH
Confidence 456677666655666669999999999999999999999998888887776 89999999999999999883
No 314
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.78 E-value=3.1 Score=24.58 Aligned_cols=24 Identities=8% Similarity=-0.078 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYS 513 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~ 513 (575)
..+..+|..++.+|++++|...+.
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356789999999999999998875
No 315
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.54 E-value=8.2 Score=35.64 Aligned_cols=61 Identities=15% Similarity=-0.010 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTI 550 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al 550 (575)
....+.+..++..+++++|+..+++++....+. ..+-.+++.+.+.++++++|+..++..-
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~ 153 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK 153 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence 345678888999999999999999999654333 5667889999999999999999776544
No 316
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=77.20 E-value=4.9 Score=30.99 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 518 (575)
+.+..+..+|...=..|+|++|++.|.++++.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 46777888999999999999999999999976
No 317
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.70 E-value=9.1 Score=26.11 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170 527 SNRAAAYLELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 527 ~~ra~~~~~l~~~~~Ai~~~~~al~ 551 (575)
+++|.+|+++|+++.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5788888888888888888888885
No 318
>PLN03077 Protein ECB2; Provisional
Probab=76.62 E-value=10 Score=44.33 Aligned_cols=82 Identities=7% Similarity=-0.039 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHH
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCS 566 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~ 566 (575)
..|.-....+.+.|++++|.+.+++. .+.|+ +..|..+-.++...++.+.+....+++++++|++. ..+..++..
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD 703 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence 45556667777788888888777663 34444 44555555566667777777777888888888765 334455555
Q ss_pred HHHhhhh
Q 008170 567 MLIYLLC 573 (575)
Q Consensus 567 l~~~~~~ 573 (575)
.|+|..+
T Consensus 704 ~g~~~~a 710 (857)
T PLN03077 704 AGKWDEV 710 (857)
T ss_pred CCChHHH
Confidence 6666544
No 319
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.56 E-value=11 Score=37.10 Aligned_cols=58 Identities=19% Similarity=0.129 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008170 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549 (575)
Q Consensus 492 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~a 549 (575)
+...+..|...|.+.+|++..+++++++|-+-..+..+-..+..+|+--.+++.|++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445667889999999999999999999999999999999999999988888888775
No 320
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=74.98 E-value=14 Score=38.20 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI 550 (575)
Q Consensus 493 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al 550 (575)
-....+|++.++.+.|+.+-.+.|-++|.+..-+..+|.|+..+.+|.+|-+.+.-+.
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999999999999999999999999999999999988766554
No 321
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=74.87 E-value=16 Score=37.83 Aligned_cols=73 Identities=16% Similarity=0.118 Sum_probs=61.2
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------h-----C------------CCC---HHHHHHHHHHHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIK---------L-----N------------GTS---ATYYSNRAAAYLE 535 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~---------~-----~------------p~~---~~~~~~ra~~~~~ 535 (575)
+|=+...+.+.+..+.++|+++.|.+..++||= . + +.| ..+.+.....+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999872 1 1 112 4567777888889
Q ss_pred cCCHHHHHHHHHHHHHhCcc-cH
Q 008170 536 LGCFQQAEEDCSKTISLDKK-VR 557 (575)
Q Consensus 536 l~~~~~Ai~~~~~al~l~P~-~~ 557 (575)
.|-+..|++.|+-.+.+||. ++
T Consensus 116 RG~~rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999998 55
No 322
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=74.27 E-value=11 Score=28.93 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 518 (575)
+.+..+..+|...-+.|+|++|+.+|.++++.
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677888999999999999999999998864
No 323
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=74.26 E-value=5.6 Score=33.15 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 505 WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 505 ~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
...++++|.++..+.|+.+..++++|.-+-...-|++++.-++++|.+
T Consensus 60 Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 60 LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 357899999999999999999999998887788899999999999865
No 324
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=73.74 E-value=13 Score=28.71 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 518 (575)
+.+..+..+|..+-+.|+|++|+.+|.++++.
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677788888888999999999999988864
No 325
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=73.61 E-value=20 Score=34.88 Aligned_cols=64 Identities=16% Similarity=0.052 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT------SATYYSNRAAAYLELGCFQQAEEDCSKTI 550 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------~~~~~~~ra~~~~~l~~~~~Ai~~~~~al 550 (575)
-......+.|..|++.|+|++|+..|+.+...-.. ...++..+..|+.++++.++.+..+-+.+
T Consensus 176 ~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 176 MASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34556678999999999999999999999765322 25678888999999999999988876654
No 326
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=73.27 E-value=18 Score=37.29 Aligned_cols=69 Identities=12% Similarity=0.056 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHH---cCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCcc
Q 008170 489 SELLKEKGNAAFK---GKQWNKAVNYYSEAI-KLNGTSATYYSNRAAAYLEL---------GCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 489 a~~~~~~g~~~~~---~g~~~~Ai~~~~~al-~~~p~~~~~~~~ra~~~~~l---------~~~~~Ai~~~~~al~l~P~ 555 (575)
...-+..+.++-+ .|+.++|++.+.+++ ...+.+++.+.-.|.+|-.+ ...++|++.|.++.+++|+
T Consensus 179 ~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 179 HNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 3344556666767 999999999999955 44567788888888887653 3488999999999999987
Q ss_pred cH
Q 008170 556 VR 557 (575)
Q Consensus 556 ~~ 557 (575)
.+
T Consensus 259 ~Y 260 (374)
T PF13281_consen 259 YY 260 (374)
T ss_pred cc
Confidence 66
No 327
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=73.07 E-value=13 Score=28.63 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 518 (575)
.+.+..+..+|...-+.|+|++|+.+|.++|+.
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 346777888999999999999999999998865
No 328
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=71.91 E-value=16 Score=37.30 Aligned_cols=74 Identities=20% Similarity=0.077 Sum_probs=58.1
Q ss_pred CChhHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------H
Q 008170 484 GSIDASELLKEKGNAAFKG------KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF-----------------Q 540 (575)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~------g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~-----------------~ 540 (575)
.....+..+...|.-.... +++++++..|.++++++|+...+|++.|..+.++=+. .
T Consensus 247 ~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (352)
T PF02259_consen 247 SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLE 326 (352)
T ss_pred hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHH
Confidence 3445667777777777666 8899999999999999999999999999888775221 3
Q ss_pred HHHHHHHHHHHhCcccH
Q 008170 541 QAEEDCSKTISLDKKVR 557 (575)
Q Consensus 541 ~Ai~~~~~al~l~P~~~ 557 (575)
.|+..|-+++.+.+++.
T Consensus 327 ~ai~~y~~al~~~~~~~ 343 (352)
T PF02259_consen 327 QAIEGYLKALSLGSKYV 343 (352)
T ss_pred HHHHHHHHHHhhCCCch
Confidence 47888888888887743
No 329
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=71.73 E-value=20 Score=29.82 Aligned_cols=53 Identities=21% Similarity=0.223 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC 538 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~ 538 (575)
.++......+|...+-+|||++|.+...++-+..++....|..-+.+-..+||
T Consensus 56 ~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 56 RRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 56778888999999999999999999999988766666666666666666554
No 330
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=71.67 E-value=14 Score=28.27 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 518 (575)
+.+..+..+|...-+.|+|++|+.+|.++++.
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566778888888999999999999998864
No 331
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=71.54 E-value=15 Score=37.80 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcccH
Q 008170 504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC--FQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 504 ~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~--~~~Ai~~~~~al~l~P~~~ 557 (575)
.+++-+.....+++.+|++..+|+.|..++.+... +..=+..|+++++.||.|.
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNf 145 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNF 145 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccc
Confidence 44566666777777777777777777777776543 5666777777777777666
No 332
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.14 E-value=39 Score=32.52 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
|+.+..-.+++-...+.-+.++|++.|++++.+-..+ ...+...+.++.++++|+||-..+.+-..+
T Consensus 107 pdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~ 179 (308)
T KOG1585|consen 107 PDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVA 179 (308)
T ss_pred cchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhH
Confidence 4445555566666667777788888888877653222 455666777777777887777766665544
No 333
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=71.05 E-value=9.6 Score=37.71 Aligned_cols=73 Identities=10% Similarity=0.189 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSN-RAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~-ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
+.+...|.+..+-..+.+-|.+--..|.++++..|.++.+|.. -+.=+...++++.+...+.++|+++|+++.
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~ 177 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR 177 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence 3445566666665666677888888899999999999998876 334455678999999999999999999884
No 334
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=69.42 E-value=24 Score=27.25 Aligned_cols=34 Identities=15% Similarity=0.050 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH-------HHHhCcccHH
Q 008170 525 YYSNRAAAYLELGCFQQAEEDCSK-------TISLDKKVRA 558 (575)
Q Consensus 525 ~~~~ra~~~~~l~~~~~Ai~~~~~-------al~l~P~~~~ 558 (575)
-+..+|.-+-+.|++++|+.+|++ +++..|++..
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 344444444555665555555555 4566787774
No 335
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=68.11 E-value=32 Score=37.13 Aligned_cols=73 Identities=18% Similarity=0.037 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSE-AIKLNGTSATYYSNR------AAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~-al~~~p~~~~~~~~r------a~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
++.+....+.++.....|..-.++..+.+ +....|++......+ +..+..+++..++..+..++..+.|++..
T Consensus 98 ~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~ 177 (620)
T COG3914 98 PENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR 177 (620)
T ss_pred cccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh
Confidence 55677788888888777777777666666 889999998877777 77777889999999999999999999874
No 336
>PLN03077 Protein ECB2; Provisional
Probab=68.00 E-value=19 Score=42.03 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~ 551 (575)
...|...-+.+...++.+.+....++.++++|++...|..++.+|.+.|+|++|.+..+..-+
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 455666666778889999999999999999999999999999999999999999998877653
No 337
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=67.57 E-value=29 Score=36.89 Aligned_cols=33 Identities=12% Similarity=-0.035 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 523 ~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
.-+...+|.|..++|+.+||++.++..++..|.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~ 291 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN 291 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc
Confidence 456678999999999999999999999998886
No 338
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=66.81 E-value=27 Score=32.53 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT----SATYYSNRAAAYLELGCFQQAE 543 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~~~~~~ra~~~~~l~~~~~Ai 543 (575)
++++.....|.-|. ..+-++++..|.+++++... ++.++..++.+|++++++++|-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44666666666554 78999999999999998644 4899999999999999999874
No 339
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=66.68 E-value=51 Score=32.60 Aligned_cols=62 Identities=18% Similarity=0.303 Sum_probs=48.4
Q ss_pred CCChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CCC----------CHHHHHHHHHHHHHcCCHHHHHH
Q 008170 483 NGSIDASELLKEKGNAAFKGK-QWNKAVNYYSEAIKL----NGT----------SATYYSNRAAAYLELGCFQQAEE 544 (575)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g-~~~~Ai~~~~~al~~----~p~----------~~~~~~~ra~~~~~l~~~~~Ai~ 544 (575)
+....-++.+++-|...++.+ +|++|+..+++++++ ... ...++..++.+|+..+.++...+
T Consensus 29 ~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k 105 (278)
T PF08631_consen 29 DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK 105 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 334567888999999999999 999999999999988 211 14568888999988887654433
No 340
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=66.30 E-value=15 Score=22.17 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008170 503 KQWNKAVNYYSEAIKLNGTSATYYSNRAA 531 (575)
Q Consensus 503 g~~~~Ai~~~~~al~~~p~~~~~~~~ra~ 531 (575)
|+++.+...|+++++..|.+..+|.....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677778888888888877777776544
No 341
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=66.17 E-value=73 Score=33.71 Aligned_cols=64 Identities=9% Similarity=0.089 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 492 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
|...|.=-..+++++.|-..|.+||..+-.+..+|...+.+-++.++..-|...+++|+.+=|.
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 4444444556888899999999999999999999999999999999999999999999998885
No 342
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.83 E-value=25 Score=35.30 Aligned_cols=61 Identities=15% Similarity=-0.002 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~a 549 (575)
+-..-..+-.+..-|-|++|.+.-++++++|+.+.-+...++.++...++++++.+...+-
T Consensus 175 sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 175 SYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 3333334555567788888888888888888877766666777777777777776655543
No 343
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=64.88 E-value=13 Score=28.68 Aligned_cols=32 Identities=13% Similarity=0.243 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 518 (575)
..+..+..++...-+.|+|++|+.+|.++|+.
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45667777888888889999999999888865
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=64.36 E-value=24 Score=37.57 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI 550 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al 550 (575)
+...|+..|..++++|+++-|.++|.++=+.+ .+...|.-.|+-+.-.+..+.+.
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~--------~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKDFS--------GLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT-HH--------HHHHHHHHCT-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCcc--------ccHHHHHHhCCHHHHHHHHHHHH
Confidence 45699999999999999999999998865442 34445555555544444333333
No 345
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=62.94 E-value=26 Score=34.80 Aligned_cols=67 Identities=9% Similarity=-0.113 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccH
Q 008170 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE-LGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~-l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
.|....+...+.+..+.|-..|.+|++..+-...+|...|..-++ .++.+.|...|+++++.-|++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~ 70 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH
Confidence 456666777777779999999999996666678889988888667 4666669999999999988876
No 346
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=62.94 E-value=25 Score=36.80 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=20.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 532 AYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 532 ~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
..+|.++|..|...+++.|++.|+..
T Consensus 309 ~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 309 QAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 34578999999999999999998765
No 347
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=62.47 E-value=53 Score=34.70 Aligned_cols=88 Identities=9% Similarity=0.027 Sum_probs=59.9
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HH
Q 008170 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---AR 559 (575)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~ 559 (575)
...-.-+..|...+.-..++.+...|-+.+-.||-.+|.+... -..-..-+++++++.+...|++-|+..|.+- ..
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlF-k~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLF-KGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHH-HHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 3445667777777777888888888888888888888876432 2233445567888888888888888888755 23
Q ss_pred HHHHHHHHHHhh
Q 008170 560 VGYVDCSMLIYL 571 (575)
Q Consensus 560 ~~~~~~~l~~~~ 571 (575)
++.+-..+|+..
T Consensus 477 yaElE~~Lgdtd 488 (677)
T KOG1915|consen 477 YAELETSLGDTD 488 (677)
T ss_pred HHHHHHHhhhHH
Confidence 444444455443
No 348
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.40 E-value=93 Score=33.44 Aligned_cols=89 Identities=12% Similarity=-0.045 Sum_probs=68.1
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCccc
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN------GT-SATYYSNRAAAYLELGC-FQQAEEDCSKTISLDKKV 556 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~------p~-~~~~~~~ra~~~~~l~~-~~~Ai~~~~~al~l~P~~ 556 (575)
..+..-.+.-+|.++.+.|+-.+|..+|...++.. +. .+-++|.+|..|.+++. ..++.+.+.+|-...-++
T Consensus 445 ~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 445 SDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 34556677779999999999999999999988432 21 27789999999999999 999999999998876655
Q ss_pred H---HHHHHHHHHHHHhhhh
Q 008170 557 R---ARVGYVDCSMLIYLLC 573 (575)
Q Consensus 557 ~---~~~~~~~~~l~~~~~~ 573 (575)
. +-.-+++.++..+..+
T Consensus 525 ~lenRLh~rIqAAl~~~r~~ 544 (546)
T KOG3783|consen 525 ELENRLHMRIQAALHTVRKL 544 (546)
T ss_pred chhhHHHHHHHHHHHHHhcc
Confidence 5 3344555555555443
No 349
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=61.98 E-value=19 Score=31.75 Aligned_cols=65 Identities=14% Similarity=0.057 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P 554 (575)
.+.-.-.|..+.+.|+|.+|+..+++..+-.+..+...-.++.|+.-+++.+= ..+.+++++.++
T Consensus 44 ~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~W-r~~A~~~le~~~ 108 (153)
T TIGR02561 44 KELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEW-HVHADEVLARDA 108 (153)
T ss_pred cccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHH-HHHHHHHHHhCC
Confidence 33444578889999999999999999999888888888889999999988543 334556666544
No 350
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=61.76 E-value=73 Score=32.28 Aligned_cols=66 Identities=14% Similarity=0.090 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG----TSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p----~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~ 551 (575)
.+....|...+....++|+++.|...+.++.+.++ ..+.+.+..+..+...|+..+|+..++..++
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677899999999999999999999999998652 2577888899999999999999999988887
No 351
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=61.65 E-value=25 Score=35.61 Aligned_cols=62 Identities=23% Similarity=0.137 Sum_probs=51.9
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG--------TSATYYSNRAAAYLELGCFQQAEEDC 546 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p--------~~~~~~~~ra~~~~~l~~~~~Ai~~~ 546 (575)
..+....+...|+.++.+++|+.|...|.+|..+.- ++..+++..|.+++++.+++..+-..
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456678899999999999999999999999998742 34678888999999998888776543
No 352
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=60.84 E-value=24 Score=30.66 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAA 531 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~ 531 (575)
-+.++-.+..+++.++|+.++++.+..|+.+|++..+..-+-.
T Consensus 71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ 113 (149)
T KOG3364|consen 71 RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET 113 (149)
T ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 4455557777889999999999999999999999877654433
No 353
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.93 E-value=16 Score=38.40 Aligned_cols=51 Identities=12% Similarity=0.095 Sum_probs=47.0
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE 535 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~ 535 (575)
..+..+.++|.|..++..|+...|.++|.++.+.--.++.+|..++.|.+.
T Consensus 331 ~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 331 QNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred cccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456688999999999999999999999999999999999999999999864
No 354
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=59.79 E-value=31 Score=21.16 Aligned_cols=29 Identities=10% Similarity=0.194 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 008170 508 AVNYYSEAIKLNGTSATYYSNRAAAYLEL 536 (575)
Q Consensus 508 Ai~~~~~al~~~p~~~~~~~~ra~~~~~l 536 (575)
.++...++|..+|.+..+|..|-.+..++
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 45667788888888888888887776543
No 355
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=58.40 E-value=48 Score=32.25 Aligned_cols=53 Identities=23% Similarity=0.155 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCcccH
Q 008170 505 WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ-QAEEDCSKTISLDKKVR 557 (575)
Q Consensus 505 ~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~-~Ai~~~~~al~l~P~~~ 557 (575)
..+-++.+++.++-+|++..+|..|-.+...++++. .-++.+++++..|.+|+
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNY 147 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNY 147 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccch
Confidence 344455555555555555555555555555555544 44555555555555554
No 356
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=58.23 E-value=19 Score=28.04 Aligned_cols=32 Identities=13% Similarity=-0.022 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 518 (575)
+.+..+.++|..+-..|+.++|+.+|.++++.
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 44556666666666667777777777777654
No 357
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=57.47 E-value=22 Score=27.47 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 505 WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 505 ~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
.++|+...++|++.| ..|+|++|+..|.+++++
T Consensus 3 l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHH
Confidence 456666666666554 467888888888888765
No 358
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=57.07 E-value=35 Score=33.73 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=45.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q 008170 499 AFKGKQWNKAVNYYSEAIKLN----GTS----ATYYSNRAAAYLELG-CFQQAEEDCSKTISL 552 (575)
Q Consensus 499 ~~~~g~~~~Ai~~~~~al~~~----p~~----~~~~~~ra~~~~~l~-~~~~Ai~~~~~al~l 552 (575)
..++|+++.|..+|.|+-.+. |+. +..++|.|...++.+ ++++|+..+++++++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 468899999999999987654 332 567899999999999 999999999999877
No 359
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=55.77 E-value=85 Score=34.53 Aligned_cols=82 Identities=18% Similarity=0.168 Sum_probs=62.5
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-NGTS-----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-~p~~-----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
+|.....|..+-.. .+++..+-+.-|++|++. +|.. ..+|...|..|...++.+.|...++++++.+=....
T Consensus 345 n~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 345 NPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred CCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 46677778776554 568899999999999864 5654 578999999999999999999999999988655555
Q ss_pred HHHHHHHHHH
Q 008170 559 RVGYVDCSML 568 (575)
Q Consensus 559 ~~~~~~~~l~ 568 (575)
.+..+.+..+
T Consensus 423 dLa~vw~~wa 432 (835)
T KOG2047|consen 423 DLAEVWCAWA 432 (835)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 360
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=55.40 E-value=25 Score=27.40 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHHHHHhCC
Q 008170 503 KQWNKAVNYYSEAIKLNG 520 (575)
Q Consensus 503 g~~~~Ai~~~~~al~~~p 520 (575)
+.|++|.++.++||+.+.
T Consensus 3 ~~~~~A~~~I~kaL~~dE 20 (79)
T cd02679 3 GYYKQAFEEISKALRADE 20 (79)
T ss_pred hHHHHHHHHHHHHhhhhh
Confidence 456777777777777663
No 361
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=55.04 E-value=61 Score=38.85 Aligned_cols=64 Identities=14% Similarity=-0.021 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 492 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
|..+...|-+-+++++|.+.|++-++.--+....|...+..++++++-++|...+.+||+--|.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 3344445555666777777777777665566677777777777777777777777777777666
No 362
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=54.99 E-value=85 Score=32.48 Aligned_cols=81 Identities=9% Similarity=-0.059 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-HhCcccHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKL----NGTSATYYSNRAAAYLE---LGCFQQAEEDCSKTI-SLDKKVRARV 560 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~----~p~~~~~~~~ra~~~~~---l~~~~~Ai~~~~~al-~l~P~~~~~~ 560 (575)
.....+.-..|...++|+.-++..+..-.+ -++...+.+.+|.++.+ .|+.++|+..+.+++ +.++.++..+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 445566777788899999888887776655 34567788899999999 899999999999955 4455566777
Q ss_pred HHHHHHHHH
Q 008170 561 GYVDCSMLI 569 (575)
Q Consensus 561 ~~~~~~l~~ 569 (575)
+.++....+
T Consensus 221 gL~GRIyKD 229 (374)
T PF13281_consen 221 GLLGRIYKD 229 (374)
T ss_pred HHHHHHHHH
Confidence 777766554
No 363
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.11 E-value=66 Score=29.35 Aligned_cols=55 Identities=20% Similarity=0.310 Sum_probs=41.4
Q ss_pred CCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 008170 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL 536 (575)
Q Consensus 481 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l 536 (575)
..+.+|-...+-..+|...++.|+|..|...|.+... +...+....+|+++.+.+
T Consensus 159 a~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 159 AGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred cCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 3445565566666788889999999999999988776 666677778888887654
No 364
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=52.09 E-value=16 Score=36.12 Aligned_cols=48 Identities=19% Similarity=0.177 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAY 533 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~ 533 (575)
|...+.+.+.|......++.-+|=++|.+|+.++|.+.+++.||+...
T Consensus 147 P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 147 PTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 566888999999888889999999999999999999999999987543
No 365
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=52.01 E-value=45 Score=34.44 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=47.8
Q ss_pred hhhhhhhccCCCCCCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008170 466 LQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT 524 (575)
Q Consensus 466 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~ 524 (575)
+.+.+.......+-+...++.+.++.++=.|....-+.+|..|.+++.+|+...|++..
T Consensus 224 lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 224 LYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhh
Confidence 34445555555555666777799999999999999999999999999999999998643
No 366
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=51.94 E-value=90 Score=33.02 Aligned_cols=109 Identities=14% Similarity=0.096 Sum_probs=59.1
Q ss_pred ccCCchhHHhHHHHHHHHhhhhhhhccCCCCCCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008170 448 YHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYS 527 (575)
Q Consensus 448 ~~~~d~~ll~~a~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~ 527 (575)
..++|..+....+++...+... +..|.. ..-.+......|+|+++.+....+=..--.-.....
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~-------------~~~p~~---i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~ 361 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQ-------------QQDPVL---IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLR 361 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhC-------------CCCchh---hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHH
Confidence 4555556666665555544432 111222 223455666778888888777655443222222222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccH----------HHHHHHHHHHHHhhh
Q 008170 528 NRAAAYLELGCFQQAEEDCSKTISLDKKVR----------ARVGYVDCSMLIYLL 572 (575)
Q Consensus 528 ~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~----------~~~~~~~~~l~~~~~ 572 (575)
-+-....+++++++|.+...-.|.-+-+.+ .++++...++..|.+
T Consensus 362 ~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~ 416 (831)
T PRK15180 362 CRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKR 416 (831)
T ss_pred HHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHH
Confidence 333455678888888887777664332222 456666666655543
No 367
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.26 E-value=1.9e+02 Score=30.11 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
.-..+.+.|..|...|+++.|+++|.++-+.+-+. ...+.|.-.+-..+++|......-.+|.+-
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 36678899999999999999999999988776543 556888888888899999988888888765
No 368
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=50.40 E-value=25 Score=40.89 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 503 KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 503 g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
..|++|+..|++.-. .|--+.-|..+|.+|..+++|+|-++++.-|++..|+++
T Consensus 533 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 533 RDFTQALSEFSYLHG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 457788877776543 456677899999999999999999999999999999887
No 369
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=48.84 E-value=33 Score=37.05 Aligned_cols=75 Identities=11% Similarity=0.026 Sum_probs=61.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170 500 FKGKQWNKAVNYYSEAIKLNGTS-ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 500 ~~~g~~~~Ai~~~~~al~~~p~~-~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~~~i 574 (575)
..+|+..+|+.|+..|+...|.. ..-..|+|+++++-+-..+|-..+.++|.++-..+ ..+|+.+..+.+...||
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 45899999999999999998854 34578999999999999999999999998874333 56777777777766665
No 370
>PHA01486 nonstructural protein
Probab=47.53 E-value=6.4 Score=23.33 Aligned_cols=8 Identities=63% Similarity=0.737 Sum_probs=5.3
Q ss_pred CCCcccee
Q 008170 1 MSKSFNII 8 (575)
Q Consensus 1 ~~~~~~~~ 8 (575)
||||+||-
T Consensus 1 msksldir 8 (32)
T PHA01486 1 MSKSLDIR 8 (32)
T ss_pred CCcchhHH
Confidence 67777763
No 371
>PF12854 PPR_1: PPR repeat
Probab=47.08 E-value=51 Score=20.75 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008170 522 SATYYSNRAAAYLELGCFQQAEEDCSK 548 (575)
Q Consensus 522 ~~~~~~~ra~~~~~l~~~~~Ai~~~~~ 548 (575)
|...|.-+-..|.+.|+.++|++.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 345566666777777777777776654
No 372
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=46.97 E-value=1.3e+02 Score=26.25 Aligned_cols=62 Identities=18% Similarity=0.138 Sum_probs=40.5
Q ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 491 LLKEKGNAA-FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 491 ~~~~~g~~~-~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
.|.+.+..+ .++|+-++--+.+....+-+..++..+..+|.+|-++|+-.++-+.+.+|.+.
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 455555554 44555555555566655555567999999999999999999999999998865
No 373
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.74 E-value=57 Score=31.80 Aligned_cols=53 Identities=13% Similarity=0.281 Sum_probs=44.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 500 FKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 500 ~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
++..+.++|+..|.+.+++.+.. ..++-..-.+++++++|++-+..|++.|..
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 35668999999999999999876 456667778889999999999999988743
No 374
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=46.11 E-value=1.1e+02 Score=31.59 Aligned_cols=51 Identities=14% Similarity=-0.047 Sum_probs=32.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008170 499 AFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549 (575)
Q Consensus 499 ~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~a 549 (575)
..+.|+++.|.++-.++-+..|...-++...=......|+|+.|++..+..
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 345667777777777777777766655555555556667777777655554
No 375
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=45.97 E-value=71 Score=31.14 Aligned_cols=70 Identities=4% Similarity=-0.026 Sum_probs=57.0
Q ss_pred ChhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008170 485 SIDASELLKEKGNAAFKGKQWN-KAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~-~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P 554 (575)
+|++-+.|..+--..-..|++. .-++...+.|..+.++..+|..|--|....+.|++-+..+.+.|+.|-
T Consensus 108 npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di 178 (318)
T KOG0530|consen 108 NPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDI 178 (318)
T ss_pred CccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 4666777777777777777777 778888888888888888888888888888888888888888888764
No 376
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.15 E-value=66 Score=29.73 Aligned_cols=51 Identities=14% Similarity=0.108 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 506 NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 506 ~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
+..++...+.++..| ++..+.+++.++..+|+.++|.....++..+-|.+.
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~ 178 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPADE 178 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHH
Confidence 344455566666666 688899999999999999999999999999999543
No 377
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=44.01 E-value=38 Score=34.33 Aligned_cols=57 Identities=9% Similarity=0.024 Sum_probs=46.5
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 008170 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ 540 (575)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~ 540 (575)
.+++....++.++..+....++++|++.+..+....|++..+......+..+..++.
T Consensus 304 ~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~ 360 (372)
T KOG0546|consen 304 DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYN 360 (372)
T ss_pred cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHH
Confidence 345667789999999999999999999999999999999887666666555554443
No 378
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=43.81 E-value=98 Score=23.95 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhC
Q 008170 506 NKAVNYYSEAIKLN 519 (575)
Q Consensus 506 ~~Ai~~~~~al~~~ 519 (575)
..|+....+|++.|
T Consensus 4 ~~a~~l~~~Ave~D 17 (77)
T cd02683 4 LAAKEVLKRAVELD 17 (77)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555544
No 379
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=42.67 E-value=1.6e+02 Score=32.43 Aligned_cols=60 Identities=15% Similarity=0.035 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCS 547 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~ 547 (575)
...+..++.++..+-..++.++|-.+|++.+..+|+ ..++..+.-+.+.|-..+|...+.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 39 ALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred chhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 355777788888899999999999999999999998 566667777777777777766555
No 380
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=41.90 E-value=61 Score=24.25 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=12.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 008170 529 RAAAYLELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 529 ra~~~~~l~~~~~Ai~~~~~al~ 551 (575)
+|.-.-+.|++++|+..|.++++
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 33333346666666666666553
No 381
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=41.44 E-value=53 Score=26.36 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG 520 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p 520 (575)
.....+.+.+..+...|++++|+..+++++++..
T Consensus 39 ~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 39 GLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999998853
No 382
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=41.33 E-value=40 Score=26.00 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170 505 WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 505 ~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~ 551 (575)
+.+|+..+.+|++.+- .++|++|+..|.++|+
T Consensus 3 l~~A~~l~~~Ave~d~---------------~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 3 LEQAAELIRLALEKEE---------------EGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHHHHH---------------HhhHHHHHHHHHHHHH
Confidence 3567777777777652 2555666655555553
No 383
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=41.24 E-value=1.2e+02 Score=26.61 Aligned_cols=41 Identities=24% Similarity=0.110 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 008170 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYV 563 (575)
Q Consensus 523 ~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~ 563 (575)
......++...+..|+|.-|.+.++.++..+|+|..++...
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~ 110 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLK 110 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 45566778888889999999999999999999988544333
No 384
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=40.70 E-value=43 Score=34.98 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=36.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170 495 KGNAAFKGKQWNKAVNYYSEAIKLN---------GTSATYYSNRAAAYLELGCFQQAEEDCSKTI 550 (575)
Q Consensus 495 ~g~~~~~~g~~~~Ai~~~~~al~~~---------p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al 550 (575)
+...+.-.|||..|++..+. |+++ +-+...++..|.+|+.+++|.+|++.+...|
T Consensus 128 LlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567788777766543 2222 1235667788888888888888888888776
No 385
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.64 E-value=58 Score=28.20 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=32.5
Q ss_pred hhHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008170 486 IDASELL----KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY 525 (575)
Q Consensus 486 ~~~a~~~----~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~ 525 (575)
++..+.+ .++|..++.+|++++...++..||.+.+.-..+
T Consensus 74 ~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqL 117 (143)
T KOG4056|consen 74 AEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQPAQL 117 (143)
T ss_pred HHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHH
Confidence 4444444 368999999999999999999999998876654
No 386
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=40.43 E-value=30 Score=32.97 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA 523 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~ 523 (575)
|+.+.-|+..|.-..+.|+++.|.+.|++.++++|.+.
T Consensus 26 p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 26 PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 56678899999999999999999999999999999874
No 387
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=40.42 E-value=48 Score=28.26 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008170 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT 524 (575)
Q Consensus 493 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~ 524 (575)
.++|..+..+|++++|..+|-+||...|+-..
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 46899999999999999999999999886543
No 388
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=40.29 E-value=56 Score=22.28 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170 493 KEKGNAAFKGKQWNKAVNYYSEAIK 517 (575)
Q Consensus 493 ~~~g~~~~~~g~~~~Ai~~~~~al~ 517 (575)
++++..|++.|+++.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999995
No 389
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=40.09 E-value=43 Score=37.45 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNA--AFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~--~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
...+....++... ....++|..++...+-++...|..-.+++.|+.+|..+++++-|++|..-....+|++.
T Consensus 88 ~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~ 161 (748)
T KOG4151|consen 88 HVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNV 161 (748)
T ss_pred hhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 3444444444444 45678899999999999999999999999999999999999999999888889999884
No 390
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=39.52 E-value=1.1e+02 Score=31.80 Aligned_cols=69 Identities=12% Similarity=0.004 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--G--TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV 556 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--p--~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~ 556 (575)
++....-.-..|+..+.|++|-....+..--+ . ..+..+|..|.+..-+.+|..|.+++-+|+.+.|++
T Consensus 208 qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 208 QAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 34444445667788888999988877765221 1 336778889999999999999999999999999983
No 391
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=39.28 E-value=42 Score=32.79 Aligned_cols=48 Identities=10% Similarity=-0.016 Sum_probs=41.6
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAA 532 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~ 532 (575)
+|+++..+.++|..|.+.|.+..|++.++..++..|+++.+-.-+...
T Consensus 211 ~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 211 NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 467788889999999999999999999999999999998776655544
No 392
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=39.22 E-value=1.4e+02 Score=29.88 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 518 (575)
..++..|-.++...-+.++|++|+..|..+++.
T Consensus 7 l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleY 39 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNAKNYEEALRLYQNALEY 39 (439)
T ss_pred HHHHHHHHHHHhhhcchhchHHHHHHHHHHHHH
Confidence 445666667777777888899998888888763
No 393
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=38.86 E-value=3.4e+02 Score=28.99 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008170 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549 (575)
Q Consensus 493 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~a 549 (575)
...-...+..|+...|-+....+++-.|.++.....++.++..+|.|+++..+..-+
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~ 349 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDV 349 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhch
Confidence 334455678899999999999999999999999999999999999999998876544
No 394
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=38.39 E-value=53 Score=19.33 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=14.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170 526 YSNRAAAYLELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 526 ~~~ra~~~~~l~~~~~Ai~~~~~al~ 551 (575)
|+.+-.+|.+.+++++|.+.+++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444555566666666666655543
No 395
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=38.13 E-value=1.9e+02 Score=30.10 Aligned_cols=63 Identities=14% Similarity=0.128 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC-HHHHHHHHHHHHH--cCCHHHHHHHHHHHHHh
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKL-NGTS-ATYYSNRAAAYLE--LGCFQQAEEDCSKTISL 552 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-~p~~-~~~~~~ra~~~~~--l~~~~~Ai~~~~~al~l 552 (575)
....+++..+|+.++|..|.+.+....+. .++. ...+.+++.+|.. .-++++|.+.+++.+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45567888999999999999999999985 4333 3567777777765 45789999999988764
No 396
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=37.26 E-value=1.8e+02 Score=25.76 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=31.6
Q ss_pred ChhHHHHH----HHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHH
Q 008170 485 SIDASELL----KEKGNAAFKGK-QWNKAVNYYSEAIKLNGTSATY 525 (575)
Q Consensus 485 ~~~~a~~~----~~~g~~~~~~g-~~~~Ai~~~~~al~~~p~~~~~ 525 (575)
+++..+.+ ..+|..+..+| ++.++..+|-+||...|+-..+
T Consensus 82 d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~L 127 (148)
T TIGR00985 82 DPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQL 127 (148)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHH
Confidence 34444544 36899999999 9999999999999998765443
No 397
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=36.79 E-value=1.6e+02 Score=23.04 Aligned_cols=49 Identities=12% Similarity=0.002 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH---HHHHHHHHhhhhh
Q 008170 526 YSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG---YVDCSMLIYLLCI 574 (575)
Q Consensus 526 ~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~---~~~~~l~~~~~~i 574 (575)
...+|.=++...+.++|+...+++|+..++.. ..+| .++...|+|...|
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667788999999999999999987765 2333 4445556665443
No 398
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=36.03 E-value=79 Score=24.46 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170 507 KAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 507 ~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~ 551 (575)
.|+++..+|++.| +.|+|++|+..|.++++
T Consensus 5 ~Ai~~a~~Ave~D---------------~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 5 DAVQFARLAVQRD---------------QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHH---------------HccCHHHHHHHHHHHHH
Confidence 4555566666554 56666766666666654
No 399
>PF13041 PPR_2: PPR repeat family
Probab=35.67 E-value=92 Score=21.25 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Ccc
Q 008170 522 SATYYSNRAAAYLELGCFQQAEEDCSKTISL--DKK 555 (575)
Q Consensus 522 ~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l--~P~ 555 (575)
+...|+-+-..|.+.|++++|.+.+++..+. .|+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~ 37 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPD 37 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 3456777778888999999999999998765 454
No 400
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=35.62 E-value=1.3e+02 Score=23.51 Aligned_cols=20 Identities=5% Similarity=0.042 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhCCCCHHHH
Q 008170 507 KAVNYYSEAIKLNGTSATYY 526 (575)
Q Consensus 507 ~Ai~~~~~al~~~p~~~~~~ 526 (575)
+++..-.++++.+|+++.++
T Consensus 25 ~~l~~Al~~l~~~pdnP~~L 44 (80)
T PRK15326 25 TQVTEALDKLAAKPSDPALL 44 (80)
T ss_pred HHHHHHHHHhhcCCCCHHHH
Confidence 33444444444555555443
No 401
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=35.47 E-value=3e+02 Score=31.71 Aligned_cols=67 Identities=13% Similarity=-0.006 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P 554 (575)
.++.---++.+...++++++|++..+.+++.-|.+ ..++...+.++.-.|++++|.....++.+..-
T Consensus 457 ~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~ 528 (894)
T COG2909 457 LAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMAR 528 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence 34444447788889999999999999999887764 67899999999999999999999999887743
No 402
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=35.03 E-value=79 Score=31.32 Aligned_cols=46 Identities=20% Similarity=0.116 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHH
Q 008170 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLI 569 (575)
Q Consensus 524 ~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~ 569 (575)
..+...+..|.+.|.+.+|++.+++++++||-+. +.+-..+..+|+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc
Confidence 4556678889999999999999999999999554 334444444444
No 403
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.95 E-value=89 Score=33.12 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAE 543 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai 543 (575)
+...++++...|++|+|.=+.+..++++--+|.+..+....+.++.++|--.|+.
T Consensus 452 adrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~A 506 (655)
T COG2015 452 ADRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAESA 506 (655)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhccc
Confidence 4466889999999999999999999999999999999999999999998655543
No 404
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.90 E-value=2.6e+02 Score=29.90 Aligned_cols=71 Identities=18% Similarity=0.048 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccH
Q 008170 487 DASELLKEKGNAAF-KGKQWNKAVNYYSEAIKLN---GTS----ATYYSNRAAAYLELG-CFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 487 ~~a~~~~~~g~~~~-~~g~~~~Ai~~~~~al~~~---p~~----~~~~~~ra~~~~~l~-~~~~Ai~~~~~al~l~P~~~ 557 (575)
-++....+.|..++ -.++++.|-.++++|..+. |+. ..++..++.+|.... .+..+...+.+++++..+++
T Consensus 44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p 123 (629)
T KOG2300|consen 44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP 123 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence 55777788888765 5788999999999999774 333 456788899999887 78999999999999977665
No 405
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=34.89 E-value=1.1e+02 Score=34.12 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=47.8
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------hCCCCHHHHHHHHHHHHHcCCHHH
Q 008170 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIK----------------------LNGTSATYYSNRAAAYLELGCFQQ 541 (575)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~----------------------~~p~~~~~~~~ra~~~~~l~~~~~ 541 (575)
++...-.++.+.|..+.....|++|.++|.+.-. .-|++..++-..|..+...|..++
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~q 870 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQ 870 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHH
Confidence 3455667788888888888888888888876321 126667777777777777788788
Q ss_pred HHHHHHHH
Q 008170 542 AEEDCSKT 549 (575)
Q Consensus 542 Ai~~~~~a 549 (575)
|++.|-+.
T Consensus 871 AV~a~Lr~ 878 (1189)
T KOG2041|consen 871 AVEAYLRR 878 (1189)
T ss_pred HHHHHHhc
Confidence 87776654
No 406
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=34.70 E-value=1.1e+02 Score=27.43 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIK-LN------G-TSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~-~~------p-~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~ 551 (575)
.........+|.+++.|+.++|.+.++.+-. ++ | .......+++..+++.|+|++|-..+..++.
T Consensus 73 ~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 73 PEKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 4466778899999999999999988866432 11 2 1244567899999999999999999988873
No 407
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=34.65 E-value=2.7e+02 Score=28.99 Aligned_cols=75 Identities=12% Similarity=0.058 Sum_probs=62.1
Q ss_pred ChhHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHhCcccHH
Q 008170 485 SIDASELLKEKGNAAFKGKQ--WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC----FQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~--~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~----~~~Ai~~~~~al~l~P~~~~ 558 (575)
+|+.-.+|..+.-.+.++.. +..-++...++++.||.+..+|..|=.+...... ..+-++.++++|.-++.|+-
T Consensus 105 npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYs 184 (421)
T KOG0529|consen 105 NPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYS 184 (421)
T ss_pred CchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhh
Confidence 47778899999888887664 6888999999999999999999888888776544 57778999999988888774
Q ss_pred H
Q 008170 559 R 559 (575)
Q Consensus 559 ~ 559 (575)
+
T Consensus 185 a 185 (421)
T KOG0529|consen 185 A 185 (421)
T ss_pred H
Confidence 3
No 408
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=34.29 E-value=1.9e+02 Score=29.32 Aligned_cols=50 Identities=6% Similarity=-0.063 Sum_probs=41.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCcccHH
Q 008170 509 VNYYSEAIKLNGTSATYYSNRAAAYLELGC------------FQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 509 i~~~~~al~~~p~~~~~~~~ra~~~~~l~~------------~~~Ai~~~~~al~l~P~~~~ 558 (575)
...|++.++-+|.+..+|..+.....++-. .+.-+..+++||+.+|++..
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~ 66 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSER 66 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 345888999999999999998887776644 46778899999999998873
No 409
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=33.86 E-value=1.6e+02 Score=26.85 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008170 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554 (575)
Q Consensus 523 ~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P 554 (575)
-.++..+|..|.+.|++++|++.|.++.+...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~ 67 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCT 67 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC
Confidence 46789999999999999999999999887643
No 410
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=33.65 E-value=1.5e+02 Score=31.94 Aligned_cols=69 Identities=12% Similarity=0.029 Sum_probs=61.0
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
.++|.+...|..+-..+-.+ .+++.-+.|++.+..-|..+.+|-....--+..++|+.....|.+||..
T Consensus 14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45688899998887777666 9999999999999999999999999999999999999999999999854
No 411
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=33.02 E-value=94 Score=37.04 Aligned_cols=90 Identities=8% Similarity=0.018 Sum_probs=67.6
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD--- 553 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--------p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~--- 553 (575)
.++.+..|..++..+.+.+++++|+..-.++.-+. |+....|.|++...+..++...|+..+.+++.+.
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence 46677778888888999999999998888776442 5567889999999999999999999998887662
Q ss_pred --cccH------HHHHHHHHHHHHhhhhh
Q 008170 554 --KKVR------ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 554 --P~~~------~~~~~~~~~l~~~~~~i 574 (575)
|+++ .....+...++++..++
T Consensus 1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al 1077 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTAL 1077 (1236)
T ss_pred cCCCCCchhhhhhHHHHHHhhHHHHHHHH
Confidence 3222 34555666666766654
No 412
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=32.47 E-value=2e+02 Score=29.00 Aligned_cols=68 Identities=13% Similarity=0.121 Sum_probs=50.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYS--EAIKLN--GTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~--~al~~~--p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
.++..+.++..+.-.+.-|+|..|-.++- +++--+ +++..++..+=..-.-+.+|+.|++++.+.-+.
T Consensus 125 ~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 125 TPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred CHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 47889999999999999999999987643 333333 334555555555556688999999999987543
No 413
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=32.35 E-value=2.9e+02 Score=31.80 Aligned_cols=85 Identities=12% Similarity=-0.003 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---------SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR--- 557 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~---------~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~--- 557 (575)
..-..++-....+++|.+|.....++-..-+. .+....-++.+....+++++|++.++.+++.=|.+.
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~ 495 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS 495 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh
Confidence 34445667777899999998888887755433 256677789999999999999999999998777654
Q ss_pred -----HHHHHHHHHHHHhhhhh
Q 008170 558 -----ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 558 -----~~~~~~~~~l~~~~~~i 574 (575)
...+.+....|+|..|+
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al 517 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQAL 517 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHH
Confidence 34566666667776654
No 414
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=32.33 E-value=3.3e+02 Score=30.34 Aligned_cols=69 Identities=14% Similarity=0.059 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 486 IDASELLKEKGNAAF-KGKQWNKAVNYYSEAIKLNGT--S----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~-~~g~~~~Ai~~~~~al~~~p~--~----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
..++......|..++ .-.++++|..+++|++.+..+ . ..+.+-++.++.+.+... |+..++++|+.--+
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 467888899999998 678899999999999988743 2 234555677777777777 99999999876443
No 415
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=32.02 E-value=2e+02 Score=29.91 Aligned_cols=64 Identities=14% Similarity=-0.074 Sum_probs=47.8
Q ss_pred ChhHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 008170 485 SIDASELLKE--KGNAAFKGKQWNKAVNYYSEAIKLNG-----TSATYYSNRAAAYLEL--GCFQQAEEDCSK 548 (575)
Q Consensus 485 ~~~~a~~~~~--~g~~~~~~g~~~~Ai~~~~~al~~~p-----~~~~~~~~ra~~~~~l--~~~~~Ai~~~~~ 548 (575)
+|-......+ ++..+|+.++|..|.+.|.++++..+ +....+.+++.+|..- =++++|.+.+++
T Consensus 124 nP~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 124 DPYNVEGNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3444444444 66689999999999999999998754 2356777888887754 568999998884
No 416
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=30.87 E-value=1.8e+02 Score=34.72 Aligned_cols=92 Identities=17% Similarity=0.074 Sum_probs=73.3
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553 (575)
Q Consensus 482 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~ 553 (575)
..+.++....+-+.+...|..++...|+..+.++..+ .|.-+....|..+.+..+++++.|++..+.|++++
T Consensus 1008 g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1008 GKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred cCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999876 35557788999999999999999999999999864
Q ss_pred cccH-----------HHHHHHHHHHHHhhhh
Q 008170 554 KKVR-----------ARVGYVDCSMLIYLLC 573 (575)
Q Consensus 554 P~~~-----------~~~~~~~~~l~~~~~~ 573 (575)
-+.. ..++++..+++++..+
T Consensus 1088 ~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~a 1118 (1236)
T KOG1839|consen 1088 KKVLGPKELETALSYHALARLFESMKDFRNA 1118 (1236)
T ss_pred hhhcCccchhhhhHHHHHHHHHhhhHHHHHH
Confidence 3211 3456666666666544
No 417
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=30.76 E-value=1.2e+02 Score=18.09 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170 526 YSNRAAAYLELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 526 ~~~ra~~~~~l~~~~~Ai~~~~~al~ 551 (575)
|+.+-.+|.+.+++++|++.+++..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445566677777777777766554
No 418
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=30.26 E-value=95 Score=29.93 Aligned_cols=47 Identities=28% Similarity=0.268 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHH-----hCCCCH---HHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q 008170 506 NKAVNYYSEAIK-----LNGTSA---TYYSNRAAAYLE-LGCFQQAEEDCSKTISL 552 (575)
Q Consensus 506 ~~Ai~~~~~al~-----~~p~~~---~~~~~ra~~~~~-l~~~~~Ai~~~~~al~l 552 (575)
++|.+.|++|++ +.|.++ .+..|.+..|+. +++.++|+..+++++..
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 455555555554 456664 456777777755 89999999999888743
No 419
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=29.38 E-value=2.5e+02 Score=26.35 Aligned_cols=68 Identities=9% Similarity=0.004 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-------cHHHHHHHHHHHHHhhhhh
Q 008170 506 NKAVNYYSEAIKL-NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK-------VRARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 506 ~~Ai~~~~~al~~-~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~-------~~~~~~~~~~~l~~~~~~i 574 (575)
++|.+.|-++=.. .-+++.+.+.+|..|. ..+.++++..+.++|++... ....++.++..+++|.+|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4566555333221 1256899999988876 66789999999999987543 3378888888888887763
No 420
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=29.19 E-value=1.6e+02 Score=30.37 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=34.0
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170 514 EAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI 550 (575)
Q Consensus 514 ~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al 550 (575)
..|+.+|-+...+...+.++..+|+++.|.+.+++||
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999997
No 421
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=29.14 E-value=1.3e+02 Score=17.99 Aligned_cols=27 Identities=15% Similarity=-0.007 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170 525 YYSNRAAAYLELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 525 ~~~~ra~~~~~l~~~~~Ai~~~~~al~ 551 (575)
.|...-.++.+.|++++|...+++..+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555666666777776666666544
No 422
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=28.76 E-value=3.2e+02 Score=27.05 Aligned_cols=52 Identities=17% Similarity=0.096 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 505 WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 505 ~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
|.+=+....++++. ....++..++..+...++++.+++.+++.+.++|-+..
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~ 188 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEP 188 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH
Confidence 44444445555543 35677888999999999999999999999999997763
No 423
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=28.38 E-value=1.1e+02 Score=30.78 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=36.9
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYS 527 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~ 527 (575)
..+++..++..|....+.|..-+||..|..|+++.|+--..|.
T Consensus 15 ~~kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 15 LAKKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 3578899999999999999999999999999999877544444
No 424
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=28.09 E-value=1.3e+02 Score=25.19 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 518 (575)
..+..++.+|..++++|+.++|-..|.+.+.+
T Consensus 36 rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L 67 (115)
T PF08969_consen 36 RSANKLLREAEEYRQEGDEEQAYVLYMRYLTL 67 (115)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 56788999999999999999999999998876
No 425
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=27.84 E-value=5.8e+02 Score=31.31 Aligned_cols=69 Identities=9% Similarity=-0.118 Sum_probs=53.6
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P 554 (575)
..+....|...-|....-|.-+.-.+-|.+|.+++ +-...|..++-+|.+-+++++|.+.+++.++.--
T Consensus 1493 eeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~ 1561 (1710)
T KOG1070|consen 1493 EEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG 1561 (1710)
T ss_pred hHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc
Confidence 34555666655555555565566677899999886 5578899999999999999999999999997754
No 426
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=27.79 E-value=2e+02 Score=24.89 Aligned_cols=48 Identities=13% Similarity=0.000 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAY 533 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~ 533 (575)
.+..+.+++.-..++..-+.+.|...|.+.++..|++..++..+-+..
T Consensus 73 DeY~EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 73 DEYSEALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp HHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 456777888888888888899999999999999999988776654444
No 427
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=27.49 E-value=1.3e+02 Score=22.95 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhC
Q 008170 505 WNKAVNYYSEAIKLN 519 (575)
Q Consensus 505 ~~~Ai~~~~~al~~~ 519 (575)
+++|+....+|++.+
T Consensus 5 ~~~A~~li~~Av~~d 19 (77)
T smart00745 5 LSKAKELISKALKAD 19 (77)
T ss_pred HHHHHHHHHHHHHHH
Confidence 466777777776665
No 428
>PRK10316 hypothetical protein; Provisional
Probab=27.14 E-value=3.7e+02 Score=25.25 Aligned_cols=60 Identities=13% Similarity=-0.012 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170 491 LLKEKGNAAFKGKQWNKAVNYYSEA-------IKLNGTS-ATYYSNRAAAYLELGCFQQAEEDCSKTI 550 (575)
Q Consensus 491 ~~~~~g~~~~~~g~~~~Ai~~~~~a-------l~~~p~~-~~~~~~ra~~~~~l~~~~~Ai~~~~~al 550 (575)
.....+|..++.|+.++|++.++-+ +.+-|-. -.--.+++..+++.|+|.||-..++++.
T Consensus 129 ~Ava~AN~~Lk~Gd~~~A~e~LklAgvdv~~~~al~PL~qT~~~V~~A~~ll~~gkyyeA~~aLk~a~ 196 (209)
T PRK10316 129 AAIKIANEKMAKGDKKGAMEELRLAGVGVMENQYLMPLKQTRNAVADAQKLLDKGKYYEANLALKGAE 196 (209)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCcchhhHhHhcCchhhHHHHHHHHHHHhCCChhHHHHHHHhhc
Confidence 4456899999999999999877543 2233432 2345678999999999999988877764
No 429
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=26.70 E-value=89 Score=29.93 Aligned_cols=57 Identities=16% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHcCCHHHHHHHHHHHHHh----------------------------------------------------CCCCHHHH
Q 008170 499 AFKGKQWNKAVNYYSEAIKL----------------------------------------------------NGTSATYY 526 (575)
Q Consensus 499 ~~~~g~~~~Ai~~~~~al~~----------------------------------------------------~p~~~~~~ 526 (575)
+|..|+|+.|++....||+. +.-.+..|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Q ss_pred HHHHHHH---------HHcCCHHHHHHHHHHHHHhCcc
Q 008170 527 SNRAAAY---------LELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 527 ~~ra~~~---------~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
--.|..+ ...++..+|+..+++|+++||+
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
No 430
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=26.53 E-value=1.6e+02 Score=21.59 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170 509 VNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 509 i~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~ 551 (575)
++.+.+.++....+..-+...-.-++++|++++|.++.++..+
T Consensus 9 ~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 9 LEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444444444455556666777889999999998888764
No 431
>PF13041 PPR_2: PPR repeat family
Probab=26.47 E-value=2.1e+02 Score=19.37 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~ 519 (575)
..|...-..+.+.|++++|++.|++-.+..
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 355667778999999999999999998764
No 432
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.37 E-value=2.7e+02 Score=30.44 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=53.3
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCCC---HHHHHHHHHHHHHcCCHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL---------------------NGTS---ATYYSNRAAAYLELGCFQ 540 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~---------------------~p~~---~~~~~~ra~~~~~l~~~~ 540 (575)
.|=+...+.+.+.....+|+.+-|.....++|=. .|.+ ..+++..-+.+.+.|-|.
T Consensus 280 sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~r 359 (665)
T KOG2422|consen 280 SPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWR 359 (665)
T ss_pred CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChH
Confidence 3677888888888888888888887777776611 1222 233444445555678999
Q ss_pred HHHHHHHHHHHhCcc-cHH
Q 008170 541 QAEEDCSKTISLDKK-VRA 558 (575)
Q Consensus 541 ~Ai~~~~~al~l~P~-~~~ 558 (575)
-|.+.|+-.++++|. ++.
T Consensus 360 TA~E~cKlllsLdp~eDPl 378 (665)
T KOG2422|consen 360 TALEWCKLLLSLDPSEDPL 378 (665)
T ss_pred HHHHHHHHHhhcCCcCCch
Confidence 999999999999998 663
No 433
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.30 E-value=2.5e+02 Score=27.10 Aligned_cols=31 Identities=19% Similarity=0.151 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553 (575)
Q Consensus 523 ~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~ 553 (575)
..+....|.-|++.|+|++|++.++++....
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~y 208 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSY 208 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4456789999999999999999999997553
No 434
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=26.22 E-value=4.8e+02 Score=24.61 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=30.5
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~ 519 (575)
..+....++-.|...++.|++++|++.|.+.+...
T Consensus 161 ~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 161 GMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34667788889999999999999999999999754
No 435
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=25.97 E-value=9.2e+02 Score=27.03 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=60.5
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHcCCHHHHHHH
Q 008170 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT------------------SATYYSNRAAAYLELGCFQQAEED 545 (575)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------------------~~~~~~~ra~~~~~l~~~~~Ai~~ 545 (575)
.-.+-+..|.+-|..-++.++++.|+...++|...-.. +..+|...+..-..+|-++.....
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 34566888899998899999999999999888854211 245677788888888888888899
Q ss_pred HHHHHHhC---cccHHHHHHHHHH
Q 008170 546 CSKTISLD---KKVRARVGYVDCS 566 (575)
Q Consensus 546 ~~~al~l~---P~~~~~~~~~~~~ 566 (575)
|++.|.|. |.-..+++.++..
T Consensus 500 YdriidLriaTPqii~NyAmfLEe 523 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIIINYAMFLEE 523 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Confidence 99998875 3333444444443
No 436
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=25.79 E-value=1.3e+02 Score=34.22 Aligned_cols=43 Identities=23% Similarity=0.163 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008170 507 KAVNYYSEAIKLNGT-----SATYYSNRAAAYLELGCFQQAEEDCSKT 549 (575)
Q Consensus 507 ~Ai~~~~~al~~~p~-----~~~~~~~ra~~~~~l~~~~~Ai~~~~~a 549 (575)
+++-.+++|+++... .-..|+|.|.-+...++.+.|+++|+|+
T Consensus 837 Qs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 837 QSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 333344445555432 1456899999999999999999999974
No 437
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=25.70 E-value=1.6e+02 Score=18.44 Aligned_cols=14 Identities=14% Similarity=0.100 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHh
Q 008170 539 FQQAEEDCSKTISL 552 (575)
Q Consensus 539 ~~~Ai~~~~~al~l 552 (575)
+++|+..++++.+.
T Consensus 24 ~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 24 YEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHc
Confidence 55666666665543
No 438
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=25.57 E-value=2.7e+02 Score=29.91 Aligned_cols=51 Identities=8% Similarity=0.021 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 508 AVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 508 Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
-...|+.|+..-+.|..+|.+......+.+.+.+--..|.++|+.+|+++.
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~d 140 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPD 140 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCch
Confidence 346688888888889999999977777777799999999999999999884
No 439
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=25.51 E-value=5.8e+02 Score=25.91 Aligned_cols=72 Identities=11% Similarity=0.041 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG------TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p------~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
.+..+++.+++.-|.+.|+-+.|++.+++..+..- +-.-....+|..|....=..+-++-.+..++.-.+|.
T Consensus 101 ~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWe 178 (393)
T KOG0687|consen 101 SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWE 178 (393)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChh
Confidence 46688999999999999999999998888765431 2233455677777776667777777777777665544
No 440
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=24.68 E-value=1.4e+02 Score=18.29 Aligned_cols=26 Identities=19% Similarity=-0.003 Sum_probs=12.8
Q ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHHH
Q 008170 526 YSNRAAAYLEL----GCFQQAEEDCSKTIS 551 (575)
Q Consensus 526 ~~~ra~~~~~l----~~~~~Ai~~~~~al~ 551 (575)
.+++|.+|..- .++++|+..++++.+
T Consensus 4 ~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 4 QYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 34445444432 255555555555544
No 441
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.63 E-value=3e+02 Score=30.48 Aligned_cols=66 Identities=18% Similarity=0.085 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
.-+...++...+|++..+.+.|.+.|.+|=+.+|.++-.......+...-++-++|+....+....
T Consensus 392 ~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 392 RFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 346667788999999999999999999999999999988888888888899999999987776543
No 442
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.15 E-value=3e+02 Score=29.46 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=56.3
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT------SATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553 (575)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~ 553 (575)
+....+..++-.|.-.|+++++.||-....+.++..-- .+..+.-++.+++.+|+..|+.....-++++.
T Consensus 440 sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 440 SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence 34566778899999999999999999999999988611 13446667888888999999998888887664
No 443
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=23.85 E-value=33 Score=37.04 Aligned_cols=32 Identities=31% Similarity=0.535 Sum_probs=23.3
Q ss_pred cccceeeeCCCCCccCCCCCCCCCCCccccccccC
Q 008170 189 FCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN 223 (575)
Q Consensus 189 ~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~ 223 (575)
.|||-|++|-.--=|. +-...|+||.|||+|+
T Consensus 383 AcGv~girpGtycepk---mttVGSQDTTGpMTrd 414 (852)
T COG1049 383 ACGVPGIRPGTYCEPK---MTTVGSQDTTGPMTRD 414 (852)
T ss_pred ccCCccccCCCcccce---eeeeccccCCCCccHH
Confidence 6999999985433332 2344689999999996
No 444
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=23.63 E-value=6e+02 Score=26.55 Aligned_cols=63 Identities=17% Similarity=0.057 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008170 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554 (575)
Q Consensus 491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P 554 (575)
.+..++..... -+...|...-.+++++.|+...+-..-+..+++.++..++-..++.+-+.+|
T Consensus 232 LLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 232 LLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 33334443333 2355666666666666666655555556666666666666666666666555
No 445
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.32 E-value=2.3e+02 Score=31.10 Aligned_cols=63 Identities=22% Similarity=0.215 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHH------------HHHHH-HHHHHcCCHHHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--------GTSATY------------YSNRA-AAYLELGCFQQAEED 545 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--------p~~~~~------------~~~ra-~~~~~l~~~~~Ai~~ 545 (575)
+...+|+++|+..++.+++..|.+++.++-.+. ..++.. .+|.| .||+.+|+++++++.
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHH
Confidence 446689999999999999999999999987552 222322 22222 467777888887776
Q ss_pred HHHH
Q 008170 546 CSKT 549 (575)
Q Consensus 546 ~~~a 549 (575)
+.+.
T Consensus 744 Li~t 747 (794)
T KOG0276|consen 744 LIST 747 (794)
T ss_pred HHhc
Confidence 5544
No 446
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=23.31 E-value=4.2e+02 Score=29.12 Aligned_cols=52 Identities=13% Similarity=0.173 Sum_probs=31.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170 499 AFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553 (575)
Q Consensus 499 ~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~ 553 (575)
+....+|..|+...++. .-+-..+|...|.+.++++++.+|.+-|++++++.
T Consensus 566 Lie~ErYqlaV~mckKc---~iD~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklk 617 (1141)
T KOG1811|consen 566 LIEAERYQLAVEMCKKC---GIDTFGAWHAWGLACLKAENLAAAREKFKQAFKLK 617 (1141)
T ss_pred HHHHHHHHHHHHHHhhc---CCCcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCC
Confidence 33444444444443321 12335577777788888888888888888887775
No 447
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.10 E-value=1.7e+02 Score=33.35 Aligned_cols=76 Identities=9% Similarity=0.067 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---ccHHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK---KVRARVGY 562 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P---~~~~~~~~ 562 (575)
...+.+...|+-+|++|+|++|...|-+.|.. +|....-.+ ++-++..+-..+++...+..- ++..-+-.
T Consensus 366 ~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf------Ldaq~IknLt~YLe~L~~~gla~~dhttlLLn 439 (933)
T KOG2114|consen 366 TLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF------LDAQRIKNLTSYLEALHKKGLANSDHTTLLLN 439 (933)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh------cCHHHHHHHHHHHHHHHHcccccchhHHHHHH
Confidence 44667788899999999999999999998865 343332222 344445554555555444322 23344444
Q ss_pred HHHHHH
Q 008170 563 VDCSML 568 (575)
Q Consensus 563 ~~~~l~ 568 (575)
++..++
T Consensus 440 cYiKlk 445 (933)
T KOG2114|consen 440 CYIKLK 445 (933)
T ss_pred HHHHhc
Confidence 444443
No 448
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=23.09 E-value=3.5e+02 Score=20.72 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhC
Q 008170 505 WNKAVNYYSEAIKLN 519 (575)
Q Consensus 505 ~~~Ai~~~~~al~~~ 519 (575)
.++|+...++|++.|
T Consensus 3 l~~Ai~lv~~Av~~D 17 (75)
T cd02684 3 LEKAIALVVQAVKKD 17 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777777776654
No 449
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.94 E-value=5.4e+02 Score=23.72 Aligned_cols=82 Identities=9% Similarity=-0.029 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH------HH
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT--S--ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR------AR 559 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--~--~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~------~~ 559 (575)
.+....+....++|+-..|+..|+++-.-.|- - -.+...-+..++..|.|++-..-.+.. .-+ .++ ++
T Consensus 95 LA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepL-a~d-~n~mR~sArEA 172 (221)
T COG4649 95 LARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPL-AGD-GNPMRHSAREA 172 (221)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhc-cCC-CChhHHHHHHH
Confidence 34556777778888888888888877654432 1 234566666777778888765544332 222 222 45
Q ss_pred HHHHHHHHHHhhhh
Q 008170 560 VGYVDCSMLIYLLC 573 (575)
Q Consensus 560 ~~~~~~~l~~~~~~ 573 (575)
+|.....-|+|..|
T Consensus 173 LglAa~kagd~a~A 186 (221)
T COG4649 173 LGLAAYKAGDFAKA 186 (221)
T ss_pred HhHHHHhccchHHH
Confidence 55555555555443
No 450
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=22.78 E-value=1.8e+02 Score=22.19 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhC
Q 008170 505 WNKAVNYYSEAIKLN 519 (575)
Q Consensus 505 ~~~Ai~~~~~al~~~ 519 (575)
.++|+...++|++.+
T Consensus 3 ~~~A~~l~~~Av~~D 17 (75)
T cd02678 3 LQKAIELVKKAIEED 17 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356677777776654
No 451
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=22.36 E-value=6.3e+02 Score=27.55 Aligned_cols=55 Identities=15% Similarity=0.101 Sum_probs=48.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 498 AAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 498 ~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
.|+-+++++-|.+.|.-.++.-++++..-+.....+..+++-..+...|++++..
T Consensus 410 Ey~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 410 EYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 4566888999999999999999999888888888888999999999999999876
No 452
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=22.36 E-value=3.2e+02 Score=26.49 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 008170 505 WNKAVNYYSEAIKL-----NGTSA---TYYSNRAAAYLE-LGCFQQAEEDCSKTIS 551 (575)
Q Consensus 505 ~~~Ai~~~~~al~~-----~p~~~---~~~~~ra~~~~~-l~~~~~Ai~~~~~al~ 551 (575)
-++|.+.|++|+++ .|.++ .+..|.+..|+. +++.++|+...++++.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35788888888865 36664 345666666665 6999999987777663
No 453
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=22.30 E-value=1.9e+02 Score=21.95 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhC
Q 008170 505 WNKAVNYYSEAIKLN 519 (575)
Q Consensus 505 ~~~Ai~~~~~al~~~ 519 (575)
++.|+...++|++.+
T Consensus 3 ~~~a~~l~~~Av~~D 17 (75)
T cd02656 3 LQQAKELIKQAVKED 17 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666666666554
No 454
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.15 E-value=4.2e+02 Score=30.66 Aligned_cols=71 Identities=11% Similarity=0.119 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------------------------------------
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------------------------------------------------ 518 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~------------------------------------------------ 518 (575)
.+...-.++|..+...|+|.+|+++|...|-.
T Consensus 989 ~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~E 1068 (1202)
T KOG0292|consen 989 SQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLE 1068 (1202)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHH
Confidence 44566678899999999999999999987721
Q ss_pred ----------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 519 ----------NGTS-ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 519 ----------~p~~-~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
.|.+ ..++.---.+++|++++..|-..+.+.+++-|.-+
T Consensus 1069 lAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~ 1118 (1202)
T KOG0292|consen 1069 LAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPP 1118 (1202)
T ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCh
Confidence 0111 11222333567789999999999999999988654
No 455
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=21.96 E-value=4.8e+02 Score=25.50 Aligned_cols=67 Identities=19% Similarity=0.068 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHH
Q 008170 488 ASELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG---------------CFQQAEEDCSK 548 (575)
Q Consensus 488 ~a~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~---------------~~~~Ai~~~~~ 548 (575)
......+.|..|.. ..++++|+..|.+|-+... ....++.+ +++..+ +...|...+.+
T Consensus 186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~ 262 (292)
T COG0790 186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQK 262 (292)
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHH
Confidence 35566667777655 5689999999999999875 77888888 666555 78888888888
Q ss_pred HHHhCcccH
Q 008170 549 TISLDKKVR 557 (575)
Q Consensus 549 al~l~P~~~ 557 (575)
+....+...
T Consensus 263 ~~~~~~~~~ 271 (292)
T COG0790 263 ACELGFDNA 271 (292)
T ss_pred HHHcCChhH
Confidence 877765443
No 456
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.62 E-value=3.9e+02 Score=29.43 Aligned_cols=48 Identities=21% Similarity=0.108 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhC
Q 008170 504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL----GCFQQAEEDCSKTISLD 553 (575)
Q Consensus 504 ~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l----~~~~~Ai~~~~~al~l~ 553 (575)
++..|.++|..|.+. -+..+.+++|.||..- .+...|...++++-+.+
T Consensus 343 d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred cHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 445555555555544 2455555555555432 34556666666665554
No 457
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.23 E-value=5.1e+02 Score=30.63 Aligned_cols=62 Identities=10% Similarity=0.117 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
-++...|.+.+.+.++.+...+|++.|-+ -+++..|.+.-.+-.+.|+|++-++++..+-+.
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 34566788899999999999999999943 367888888888888899999999988887654
No 458
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=21.19 E-value=2.1e+02 Score=26.36 Aligned_cols=50 Identities=8% Similarity=-0.001 Sum_probs=36.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008170 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545 (575)
Q Consensus 495 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~ 545 (575)
...++++.|+|++|.+.+++..+ +|++......+..+-.+.+.|..-+..
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqn 166 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQN 166 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHh
Confidence 34567999999999999999998 888877766666655555555544443
No 459
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=20.79 E-value=3.5e+02 Score=26.49 Aligned_cols=31 Identities=19% Similarity=0.000 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 008170 522 SATYYSNRAAAYLE----LGCFQQAEEDCSKTISL 552 (575)
Q Consensus 522 ~~~~~~~ra~~~~~----l~~~~~Ai~~~~~al~l 552 (575)
++.+.+++|..|.. ..++.+|...|+++.+.
T Consensus 108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~ 142 (292)
T COG0790 108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL 142 (292)
T ss_pred cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc
Confidence 34444444444443 22444444444444443
No 460
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.37 E-value=8.8e+02 Score=24.61 Aligned_cols=66 Identities=11% Similarity=0.018 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAI--KLNGTSATYYSNRAAAYL----ELGCFQQAEEDCSKTISLD 553 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al--~~~p~~~~~~~~ra~~~~----~l~~~~~Ai~~~~~al~l~ 553 (575)
+...+...+..|++.++-.+|..+.+++- .-+..+..+....-.||. ..++|-||...|.+..+..
T Consensus 143 kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~k 214 (399)
T KOG1497|consen 143 KLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQRK 214 (399)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777777766643 223344444333333333 2456777777777666443
No 461
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=20.13 E-value=5.2e+02 Score=21.62 Aligned_cols=56 Identities=11% Similarity=0.026 Sum_probs=32.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCcc
Q 008170 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT-ISLDKK 555 (575)
Q Consensus 495 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~a-l~l~P~ 555 (575)
+...++++|+|++|+. +......+.+-.-.+.|-.++|--+++...+.+. .+-+|.
T Consensus 46 r~~sLmNrG~Yq~ALl-----~~~~~~~pdL~p~~AL~a~klGL~~~~e~~l~rla~~g~~~ 102 (116)
T PF09477_consen 46 RLSSLMNRGDYQEALL-----LPQCHCYPDLEPWAALCAWKLGLASALESRLTRLASSGSPE 102 (116)
T ss_dssp HHHHHHHTT-HHHHHH-----HHTTS--GGGHHHHHHHHHHCT-HHHHHHHHHHHCT-SSHH
T ss_pred HHHHHHhhHHHHHHHH-----hcccCCCccHHHHHHHHHHhhccHHHHHHHHHHHHhCCCHH
Confidence 5566778888888822 2233344555555677777888888887777743 444443
Done!