Query 008170
Match_columns 575
No_of_seqs 545 out of 3096
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 19:49:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008170.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008170hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dc0_A Probable amidase; struc 100.0 4.7E-93 1.6E-97 745.9 26.0 406 27-465 13-432 (434)
2 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 6.8E-92 2.3E-96 748.1 25.1 426 20-466 6-476 (485)
3 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 7.8E-91 2.7E-95 733.9 26.9 417 27-466 13-458 (471)
4 1o9p_A Malonamidase E2; malona 100.0 4.6E-90 1.6E-94 718.2 31.6 394 27-467 14-411 (414)
5 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 4E-91 1.4E-95 738.3 23.9 426 21-466 6-469 (478)
6 3a2q_A 6-aminohexanoate-cyclic 100.0 1.1E-90 3.8E-95 740.9 22.6 421 21-466 9-474 (493)
7 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 9.5E-90 3.2E-94 730.7 26.0 403 27-466 19-461 (476)
8 1m22_A Peptide amidase, PAM; e 100.0 7.4E-89 2.5E-93 727.9 21.9 407 21-467 12-485 (503)
9 3a1k_A Amidase; AS family enzy 100.0 5.3E-87 1.8E-91 713.2 26.8 416 29-466 27-501 (521)
10 3ppm_A Fatty-acid amide hydrol 100.0 2.1E-85 7.1E-90 702.8 20.2 443 9-469 60-569 (573)
11 4gco_A Protein STI-1; structur 99.5 6.3E-14 2.1E-18 121.0 12.2 92 483-574 7-101 (126)
12 4gcn_A Protein STI-1; structur 99.4 3.6E-13 1.2E-17 116.3 9.5 90 485-574 4-103 (127)
13 3gyz_A Chaperone protein IPGC; 99.4 3.8E-12 1.3E-16 113.4 11.4 92 483-574 30-124 (151)
14 2hr2_A Hypothetical protein; a 99.3 6.2E-12 2.1E-16 111.5 10.7 88 487-574 9-122 (159)
15 3upv_A Heat shock protein STI1 99.3 1.5E-11 5.3E-16 105.2 11.8 89 486-574 1-92 (126)
16 3sz7_A HSC70 cochaperone (SGT) 99.2 5.4E-11 1.8E-15 107.1 12.8 93 482-574 4-99 (164)
17 3rkv_A Putative peptidylprolyl 99.2 2.5E-11 8.4E-16 109.1 9.7 90 485-574 7-117 (162)
18 4gco_A Protein STI-1; structur 99.2 6.8E-11 2.3E-15 101.8 11.5 78 486-563 44-121 (126)
19 4ga2_A E3 SUMO-protein ligase 99.2 6.3E-11 2.1E-15 105.3 10.4 88 485-572 27-117 (150)
20 2vgx_A Chaperone SYCD; alterna 99.2 1E-10 3.5E-15 103.7 11.6 90 485-574 17-109 (148)
21 2l6j_A TPR repeat-containing p 99.2 1.4E-10 4.6E-15 96.3 11.5 87 488-574 3-98 (111)
22 2xcb_A PCRH, regulatory protei 99.2 1.7E-10 5.7E-15 101.2 11.9 91 484-574 13-106 (142)
23 1hxi_A PEX5, peroxisome target 99.1 5E-10 1.7E-14 95.5 12.6 85 490-574 18-105 (121)
24 3q49_B STIP1 homology and U bo 99.1 5.6E-10 1.9E-14 96.5 11.0 89 486-574 6-97 (137)
25 3gyz_A Chaperone protein IPGC; 99.1 7.2E-10 2.4E-14 98.6 11.0 72 486-557 67-138 (151)
26 2hr2_A Hypothetical protein; a 99.1 4.3E-10 1.5E-14 99.6 9.0 72 486-557 54-136 (159)
27 4gyw_A UDP-N-acetylglucosamine 99.0 6.6E-10 2.2E-14 123.8 11.8 89 486-574 40-131 (723)
28 3ma5_A Tetratricopeptide repea 99.0 1.1E-09 3.8E-14 89.8 9.5 73 485-557 3-75 (100)
29 1na3_A Designed protein CTPR2; 99.0 5.1E-09 1.7E-13 83.2 12.9 79 486-564 6-84 (91)
30 2kc7_A BFR218_protein; tetratr 99.0 2.3E-09 7.8E-14 87.2 10.9 82 492-573 3-87 (99)
31 2lni_A Stress-induced-phosphop 99.0 2E-09 6.9E-14 91.9 10.9 73 485-557 12-84 (133)
32 1zu2_A Mitochondrial import re 99.0 2.5E-09 8.4E-14 94.5 10.9 74 485-558 32-126 (158)
33 3rkv_A Putative peptidylprolyl 99.0 5.9E-09 2E-13 93.3 12.8 73 485-557 59-131 (162)
34 2pl2_A Hypothetical conserved 99.0 3.2E-09 1.1E-13 100.3 11.5 89 486-574 2-104 (217)
35 3urz_A Uncharacterized protein 98.9 7.7E-09 2.6E-13 96.9 13.4 66 495-560 60-125 (208)
36 3upv_A Heat shock protein STI1 98.9 6.5E-09 2.2E-13 88.6 11.4 79 486-564 35-119 (126)
37 1kt0_A FKBP51, 51 kDa FK506-bi 98.9 3.4E-09 1.2E-13 112.2 11.5 83 489-571 317-402 (457)
38 1p5q_A FKBP52, FK506-binding p 98.9 4.4E-09 1.5E-13 106.6 11.6 85 489-573 196-283 (336)
39 2dba_A Smooth muscle cell asso 98.9 6.8E-09 2.3E-13 90.4 11.4 70 489-558 65-134 (148)
40 2c2l_A CHIP, carboxy terminus 98.9 2.9E-09 1E-13 105.0 10.1 88 487-574 2-92 (281)
41 3k9i_A BH0479 protein; putativ 98.9 7.7E-09 2.6E-13 87.2 11.3 74 485-558 23-96 (117)
42 4gyw_A UDP-N-acetylglucosamine 98.9 3E-09 1E-13 118.4 11.1 90 485-574 73-165 (723)
43 1elw_A TPR1-domain of HOP; HOP 98.9 8.7E-09 3E-13 85.6 11.4 69 489-557 4-72 (118)
44 2fbn_A 70 kDa peptidylprolyl i 98.9 7.9E-09 2.7E-13 95.8 11.9 82 490-571 89-173 (198)
45 2vyi_A SGTA protein; chaperone 98.9 1.2E-08 4E-13 86.4 12.0 69 489-557 46-114 (131)
46 2h6f_A Protein farnesyltransfe 98.9 3E-09 1E-13 109.6 9.8 90 485-574 127-220 (382)
47 2pl2_A Hypothetical conserved 98.9 3.9E-09 1.3E-13 99.7 9.7 89 486-574 36-138 (217)
48 2kck_A TPR repeat; tetratricop 98.9 1.7E-09 5.9E-14 89.1 6.4 89 486-574 3-97 (112)
49 3sz7_A HSC70 cochaperone (SGT) 98.9 6.6E-09 2.3E-13 93.2 10.5 73 486-558 42-114 (164)
50 4ga2_A E3 SUMO-protein ligase 98.9 6.8E-09 2.3E-13 91.9 10.2 74 486-559 62-136 (150)
51 2vgx_A Chaperone SYCD; alterna 98.9 8.4E-09 2.9E-13 91.2 10.7 72 486-557 52-123 (148)
52 3vtx_A MAMA; tetratricopeptide 98.9 8E-09 2.7E-13 94.2 10.9 86 487-572 3-91 (184)
53 2xcb_A PCRH, regulatory protei 98.9 9.8E-09 3.3E-13 89.8 10.9 72 486-557 49-120 (142)
54 3urz_A Uncharacterized protein 98.9 5.1E-09 1.7E-13 98.2 9.7 87 488-574 3-108 (208)
55 3vtx_A MAMA; tetratricopeptide 98.9 6.5E-09 2.2E-13 94.8 9.7 72 486-557 104-175 (184)
56 1a17_A Serine/threonine protei 98.9 1E-08 3.5E-13 91.2 10.8 89 486-574 44-137 (166)
57 2h6f_A Protein farnesyltransfe 98.8 1E-08 3.4E-13 105.8 11.6 91 484-574 92-186 (382)
58 1hxi_A PEX5, peroxisome target 98.8 5.1E-09 1.7E-13 89.2 7.8 72 486-557 48-119 (121)
59 1elr_A TPR2A-domain of HOP; HO 98.8 1.7E-08 5.9E-13 85.5 10.5 88 487-574 2-99 (131)
60 4i17_A Hypothetical protein; T 98.8 1.3E-08 4.5E-13 96.3 10.6 84 490-573 8-95 (228)
61 1p5q_A FKBP52, FK506-binding p 98.8 2.7E-08 9.4E-13 100.7 13.5 70 485-554 226-296 (336)
62 2xev_A YBGF; tetratricopeptide 98.8 1.5E-08 5.1E-13 86.3 9.3 73 486-558 36-111 (129)
63 2kat_A Uncharacterized protein 98.8 2.9E-08 9.9E-13 83.1 10.4 72 486-557 16-87 (115)
64 1a17_A Serine/threonine protei 98.8 5.8E-08 2E-12 86.2 12.8 90 485-574 9-101 (166)
65 1ihg_A Cyclophilin 40; ppiase 98.8 1.4E-08 4.9E-13 104.2 9.2 90 484-573 268-360 (370)
66 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 4.5E-08 1.5E-12 103.5 12.8 61 485-545 347-407 (457)
67 2vyi_A SGTA protein; chaperone 98.7 7.6E-08 2.6E-12 81.3 11.6 93 482-574 5-100 (131)
68 2if4_A ATFKBP42; FKBP-like, al 98.7 9.4E-09 3.2E-13 104.3 6.5 67 491-557 232-298 (338)
69 1ihg_A Cyclophilin 40; ppiase 98.7 7.5E-08 2.6E-12 98.8 13.1 61 485-545 303-363 (370)
70 2e2e_A Formate-dependent nitri 98.7 5.1E-08 1.7E-12 88.3 10.1 89 486-574 41-135 (177)
71 2lni_A Stress-induced-phosphop 98.7 1E-07 3.4E-12 81.1 11.4 76 486-561 47-122 (133)
72 1na0_A Designed protein CTPR3; 98.7 1.1E-07 3.7E-12 79.5 11.3 73 487-559 41-113 (125)
73 2fbn_A 70 kDa peptidylprolyl i 98.7 1.3E-07 4.6E-12 87.4 12.8 68 485-552 118-186 (198)
74 1elw_A TPR1-domain of HOP; HOP 98.7 1.3E-07 4.4E-12 78.3 11.5 78 486-563 35-112 (118)
75 4gcn_A Protein STI-1; structur 98.7 3.9E-08 1.3E-12 84.3 8.3 71 486-556 39-116 (127)
76 3qky_A Outer membrane assembly 98.7 6.7E-08 2.3E-12 93.6 10.8 90 485-574 11-117 (261)
77 4i17_A Hypothetical protein; T 98.7 6.5E-08 2.2E-12 91.4 10.4 86 489-574 42-137 (228)
78 1hh8_A P67PHOX, NCF-2, neutrop 98.7 9.6E-08 3.3E-12 89.0 11.0 87 488-574 36-141 (213)
79 3q49_B STIP1 homology and U bo 98.7 1.3E-07 4.5E-12 81.3 10.9 70 486-555 40-109 (137)
80 1wao_1 Serine/threonine protei 98.6 9.5E-08 3.2E-12 101.6 11.4 89 486-574 37-130 (477)
81 1wao_1 Serine/threonine protei 98.6 1.7E-08 5.7E-13 107.4 5.5 89 486-574 3-94 (477)
82 3uq3_A Heat shock protein STI1 98.6 1.9E-07 6.6E-12 89.1 12.2 90 485-574 135-227 (258)
83 2dba_A Smooth muscle cell asso 98.6 3.2E-07 1.1E-11 79.6 12.5 92 483-574 22-119 (148)
84 1zu2_A Mitochondrial import re 98.6 4.7E-08 1.6E-12 86.3 6.9 68 501-568 14-94 (158)
85 1xnf_A Lipoprotein NLPI; TPR, 98.6 1.6E-07 5.6E-12 90.7 11.6 90 485-574 39-131 (275)
86 2xev_A YBGF; tetratricopeptide 98.6 3.2E-07 1.1E-11 77.9 12.0 85 490-574 3-96 (129)
87 3k9i_A BH0479 protein; putativ 98.6 1.7E-08 5.9E-13 85.0 3.8 74 501-574 2-81 (117)
88 2pzi_A Probable serine/threoni 98.6 7.8E-08 2.7E-12 107.0 9.3 88 485-572 429-519 (681)
89 1na0_A Designed protein CTPR3; 98.6 6.4E-07 2.2E-11 74.7 12.5 87 488-574 8-97 (125)
90 3fp2_A TPR repeat-containing p 98.5 1.6E-07 5.4E-12 100.5 9.9 89 486-574 22-113 (537)
91 2vq2_A PILW, putative fimbrial 98.5 3.8E-07 1.3E-11 85.0 11.2 72 486-557 5-76 (225)
92 4abn_A Tetratricopeptide repea 98.5 2.3E-07 7.9E-12 98.5 10.4 89 486-574 210-312 (474)
93 3ieg_A DNAJ homolog subfamily 98.5 4.6E-07 1.6E-11 90.9 11.9 87 488-574 2-91 (359)
94 3bee_A Putative YFRE protein; 98.5 3.4E-07 1.2E-11 73.7 8.8 73 485-557 2-77 (93)
95 2pzi_A Probable serine/threoni 98.5 6.2E-08 2.1E-12 107.8 5.9 89 485-574 463-554 (681)
96 4eqf_A PEX5-related protein; a 98.5 3.4E-07 1.2E-11 92.9 11.0 87 488-574 212-301 (365)
97 2gw1_A Mitochondrial precursor 98.5 3.6E-07 1.2E-11 96.9 11.3 88 486-574 3-93 (514)
98 2vsy_A XCC0866; transferase, g 98.5 2.6E-07 9E-12 100.3 10.3 90 485-574 53-148 (568)
99 2v5f_A Prolyl 4-hydroxylase su 98.5 1.5E-06 5.2E-11 71.5 12.3 75 489-563 5-86 (104)
100 2kck_A TPR repeat; tetratricop 98.5 3E-07 1E-11 75.3 8.0 70 487-556 38-110 (112)
101 3as5_A MAMA; tetratricopeptide 98.5 7E-07 2.4E-11 80.2 11.1 88 487-574 74-164 (186)
102 4eqf_A PEX5-related protein; a 98.5 3.5E-07 1.2E-11 92.9 9.9 87 488-574 64-153 (365)
103 3as5_A MAMA; tetratricopeptide 98.5 8E-07 2.7E-11 79.8 11.2 89 486-574 39-130 (186)
104 1hh8_A P67PHOX, NCF-2, neutrop 98.5 5E-07 1.7E-11 84.1 9.9 86 486-574 3-91 (213)
105 2y4t_A DNAJ homolog subfamily 98.5 6.4E-07 2.2E-11 93.5 11.8 91 484-574 21-114 (450)
106 2fo7_A Synthetic consensus TPR 98.5 7.2E-07 2.5E-11 75.3 10.0 87 488-574 34-123 (136)
107 3uq3_A Heat shock protein STI1 98.5 6E-07 2.1E-11 85.6 10.4 88 486-574 2-99 (258)
108 2ho1_A Type 4 fimbrial biogene 98.4 6.7E-07 2.3E-11 85.4 10.6 89 486-574 68-161 (252)
109 1fch_A Peroxisomal targeting s 98.4 8.6E-07 2.9E-11 89.7 11.9 87 488-574 216-305 (368)
110 1xnf_A Lipoprotein NLPI; TPR, 98.4 9.6E-07 3.3E-11 85.2 11.6 88 486-573 74-163 (275)
111 2vsy_A XCC0866; transferase, g 98.4 7.6E-07 2.6E-11 96.7 11.8 89 486-574 20-111 (568)
112 4abn_A Tetratricopeptide repea 98.4 4.4E-07 1.5E-11 96.4 9.5 88 486-574 134-241 (474)
113 2fo7_A Synthetic consensus TPR 98.4 9.2E-07 3.1E-11 74.6 9.8 85 490-574 2-89 (136)
114 2q7f_A YRRB protein; TPR, prot 98.4 1.2E-06 4.2E-11 82.8 11.6 87 488-574 124-213 (243)
115 2q7f_A YRRB protein; TPR, prot 98.4 1.2E-06 4.1E-11 82.8 11.5 89 486-574 88-179 (243)
116 1w3b_A UDP-N-acetylglucosamine 98.4 3.7E-07 1.3E-11 93.6 8.5 88 486-573 64-154 (388)
117 2yhc_A BAMD, UPF0169 lipoprote 98.4 1.1E-06 3.8E-11 83.1 11.1 69 489-557 4-75 (225)
118 1elr_A TPR2A-domain of HOP; HO 98.4 1.1E-06 3.8E-11 74.0 9.9 69 487-555 36-111 (131)
119 2c2l_A CHIP, carboxy terminus 98.4 4.5E-07 1.5E-11 89.1 7.9 71 486-556 35-105 (281)
120 2if4_A ATFKBP42; FKBP-like, al 98.4 3.5E-07 1.2E-11 92.6 6.8 73 485-557 260-333 (338)
121 2yhc_A BAMD, UPF0169 lipoprote 98.4 1E-06 3.5E-11 83.3 9.4 72 486-557 38-130 (225)
122 1w3b_A UDP-N-acetylglucosamine 98.4 1.2E-06 4.2E-11 89.7 10.6 71 487-557 235-305 (388)
123 1fch_A Peroxisomal targeting s 98.4 1.2E-06 4.1E-11 88.6 10.4 89 486-574 248-350 (368)
124 3qky_A Outer membrane assembly 98.3 1.7E-06 5.7E-11 83.6 10.7 82 486-567 86-198 (261)
125 3qou_A Protein YBBN; thioredox 98.3 1.3E-06 4.3E-11 86.2 9.7 69 487-555 115-183 (287)
126 3cv0_A Peroxisome targeting si 98.3 2.2E-06 7.6E-11 84.7 11.4 88 487-574 170-260 (327)
127 2ho1_A Type 4 fimbrial biogene 98.3 3.3E-06 1.1E-10 80.5 11.9 89 485-573 137-228 (252)
128 2kat_A Uncharacterized protein 98.3 1.4E-06 4.9E-11 72.5 8.1 69 506-574 2-73 (115)
129 2vq2_A PILW, putative fimbrial 98.3 3.1E-06 1.1E-10 78.6 10.5 75 484-558 108-183 (225)
130 1qqe_A Vesicular transport pro 98.3 1.7E-06 5.9E-11 85.3 9.0 66 489-554 77-149 (292)
131 2r5s_A Uncharacterized protein 98.3 3E-06 1E-10 76.6 9.9 71 504-574 89-164 (176)
132 3cv0_A Peroxisome targeting si 98.3 2.8E-06 9.7E-11 84.0 10.3 89 486-574 203-306 (327)
133 2r5s_A Uncharacterized protein 98.3 5.2E-07 1.8E-11 81.7 4.4 64 491-554 8-71 (176)
134 1qqe_A Vesicular transport pro 98.3 2.4E-06 8.3E-11 84.2 9.7 88 487-574 115-219 (292)
135 3mkr_A Coatomer subunit epsilo 98.3 4.9E-06 1.7E-10 82.2 11.7 73 486-558 197-270 (291)
136 3hym_B Cell division cycle pro 98.3 2.6E-06 8.8E-11 84.4 9.8 89 486-574 122-213 (330)
137 3mkr_A Coatomer subunit epsilo 98.3 2.8E-06 9.6E-11 83.9 10.0 75 497-571 174-251 (291)
138 2e2e_A Formate-dependent nitri 98.3 5.1E-06 1.7E-10 74.8 10.9 71 487-557 76-149 (177)
139 3hym_B Cell division cycle pro 98.2 3.1E-06 1E-10 83.9 10.2 85 489-573 193-289 (330)
140 3u4t_A TPR repeat-containing p 98.2 1.9E-06 6.4E-11 83.2 8.1 88 486-574 34-128 (272)
141 3edt_B KLC 2, kinesin light ch 98.2 3.1E-06 1E-10 81.6 9.3 90 485-574 81-189 (283)
142 3ieg_A DNAJ homolog subfamily 98.2 3.4E-06 1.2E-10 84.4 9.9 73 486-558 34-109 (359)
143 1pc2_A Mitochondria fission pr 98.2 1.4E-05 4.8E-10 69.7 11.8 74 488-561 31-109 (152)
144 3u4t_A TPR repeat-containing p 98.2 4.3E-06 1.5E-10 80.6 9.5 70 488-557 107-176 (272)
145 2y4t_A DNAJ homolog subfamily 98.2 6.7E-06 2.3E-10 85.6 11.2 72 486-557 57-128 (450)
146 3qou_A Protein YBBN; thioredox 98.1 8.4E-06 2.9E-10 80.2 10.7 87 487-573 183-274 (287)
147 3fp2_A TPR repeat-containing p 98.1 6.7E-06 2.3E-10 87.7 10.2 89 486-574 307-398 (537)
148 3edt_B KLC 2, kinesin light ch 98.1 5.9E-06 2E-10 79.6 8.5 90 485-574 39-147 (283)
149 4a1s_A PINS, partner of inscut 98.1 1.2E-05 3.9E-10 82.8 10.5 90 485-574 44-146 (411)
150 2qfc_A PLCR protein; TPR, HTH, 98.0 1.7E-05 5.9E-10 78.0 10.9 88 486-573 152-255 (293)
151 1dce_A Protein (RAB geranylger 98.0 1.7E-05 5.7E-10 86.0 10.9 82 485-566 59-152 (567)
152 3nf1_A KLC 1, kinesin light ch 98.0 1.4E-05 4.9E-10 78.2 9.3 93 482-574 20-131 (311)
153 3dra_A Protein farnesyltransfe 98.0 2.7E-05 9.2E-10 77.2 11.2 83 485-567 63-154 (306)
154 2ifu_A Gamma-SNAP; membrane fu 98.0 8.4E-06 2.9E-10 81.0 7.5 65 489-554 116-186 (307)
155 3ro3_A PINS homolog, G-protein 98.0 2E-05 6.9E-10 68.5 9.0 89 486-574 46-149 (164)
156 3ro3_A PINS homolog, G-protein 98.0 1E-05 3.5E-10 70.5 6.8 89 486-574 6-109 (164)
157 2xpi_A Anaphase-promoting comp 98.0 3E-05 1E-09 83.9 11.9 75 489-563 516-590 (597)
158 2xpi_A Anaphase-promoting comp 98.0 2.7E-05 9.2E-10 84.3 11.1 87 487-573 371-460 (597)
159 2ond_A Cleavage stimulation fa 98.0 2.2E-05 7.6E-10 77.8 9.6 50 506-555 81-131 (308)
160 3n71_A Histone lysine methyltr 97.9 3.9E-05 1.3E-09 81.3 11.8 92 482-573 344-454 (490)
161 3gw4_A Uncharacterized protein 97.9 2.4E-05 8.1E-10 71.6 9.0 88 487-574 24-127 (203)
162 3nf1_A KLC 1, kinesin light ch 97.9 2E-05 6.8E-10 77.2 8.9 90 485-574 107-215 (311)
163 4g1t_A Interferon-induced prot 97.9 1.5E-05 5.2E-10 83.6 8.4 67 488-554 50-125 (472)
164 3u3w_A Transcriptional activat 97.9 1.5E-05 5.1E-10 78.4 7.8 89 486-574 152-257 (293)
165 1ouv_A Conserved hypothetical 97.9 3.2E-05 1.1E-09 74.8 10.0 84 487-574 36-134 (273)
166 3ro2_A PINS homolog, G-protein 97.9 4.7E-05 1.6E-09 74.9 10.5 64 489-552 5-72 (338)
167 3ulq_A Response regulator aspa 97.9 1.8E-05 6.1E-10 80.9 7.5 89 486-574 140-244 (383)
168 3ma5_A Tetratricopeptide repea 97.9 1.8E-05 6.2E-10 64.2 6.0 57 518-574 2-61 (100)
169 3ulq_A Response regulator aspa 97.9 3.4E-05 1.1E-09 78.9 9.3 89 486-574 181-284 (383)
170 3gw4_A Uncharacterized protein 97.9 2.9E-05 9.9E-10 71.0 8.0 90 485-574 62-167 (203)
171 1dce_A Protein (RAB geranylger 97.9 4.7E-05 1.6E-09 82.4 10.7 80 485-564 103-185 (567)
172 2ond_A Cleavage stimulation fa 97.9 3.3E-05 1.1E-09 76.6 8.8 71 487-557 97-168 (308)
173 3q7a_A Farnesyltransferase alp 97.8 6.6E-05 2.3E-09 75.4 10.9 87 485-571 84-176 (349)
174 3sf4_A G-protein-signaling mod 97.8 4.4E-05 1.5E-09 77.8 9.6 65 488-552 8-76 (406)
175 2gw1_A Mitochondrial precursor 97.8 1.8E-05 6.2E-10 83.6 6.7 87 488-574 303-392 (514)
176 2qfc_A PLCR protein; TPR, HTH, 97.8 0.00011 3.8E-09 72.1 11.3 88 487-574 113-216 (293)
177 3dss_A Geranylgeranyl transfer 97.8 0.00019 6.6E-09 71.6 12.6 81 485-565 104-187 (331)
178 2ifu_A Gamma-SNAP; membrane fu 97.8 2.7E-05 9.2E-10 77.3 6.4 88 486-574 73-175 (307)
179 2l6j_A TPR repeat-containing p 97.7 5.4E-06 1.9E-10 67.9 0.9 64 486-549 35-104 (111)
180 3qww_A SET and MYND domain-con 97.7 6.2E-05 2.1E-09 78.4 8.9 76 482-557 333-421 (433)
181 4a1s_A PINS, partner of inscut 97.7 3.7E-05 1.3E-09 79.0 7.2 83 487-569 84-181 (411)
182 3dss_A Geranylgeranyl transfer 97.7 0.00013 4.4E-09 72.8 10.7 83 485-567 60-154 (331)
183 3q15_A PSP28, response regulat 97.7 8.5E-05 2.9E-09 75.8 9.2 89 486-574 179-281 (378)
184 4g1t_A Interferon-induced prot 97.7 7.1E-05 2.4E-09 78.4 8.8 49 486-534 244-292 (472)
185 2kc7_A BFR218_protein; tetratr 97.7 1.8E-05 6.1E-10 63.6 3.2 64 486-557 31-95 (99)
186 3dra_A Protein farnesyltransfe 97.7 0.00014 4.6E-09 72.1 10.0 83 485-567 140-230 (306)
187 3u3w_A Transcriptional activat 97.6 0.0001 3.6E-09 72.3 8.5 69 485-553 192-267 (293)
188 1ouv_A Conserved hypothetical 97.6 0.00017 5.9E-09 69.6 9.9 85 488-574 73-170 (273)
189 3q15_A PSP28, response regulat 97.6 9.2E-05 3.1E-09 75.5 8.0 90 485-574 137-242 (378)
190 3sf4_A G-protein-signaling mod 97.6 0.00015 5E-09 73.9 9.3 83 487-569 45-142 (406)
191 3ro2_A PINS homolog, G-protein 97.6 5.7E-05 2E-09 74.3 5.9 83 487-569 41-138 (338)
192 4f3v_A ESX-1 secretion system 97.6 0.00025 8.6E-09 68.9 10.1 66 490-555 172-240 (282)
193 3qwp_A SET and MYND domain-con 97.6 0.00031 1E-08 73.1 11.3 76 482-557 322-410 (429)
194 4f3v_A ESX-1 secretion system 97.6 0.00031 1.1E-08 68.2 10.4 118 452-574 102-228 (282)
195 3n71_A Histone lysine methyltr 97.5 0.0002 6.7E-09 75.8 9.5 86 489-574 309-413 (490)
196 3q7a_A Farnesyltransferase alp 97.5 0.00076 2.6E-08 67.7 12.4 80 489-568 54-134 (349)
197 1na3_A Designed protein CTPR2; 97.5 0.0003 1E-08 54.8 7.4 52 486-537 40-91 (91)
198 2ooe_A Cleavage stimulation fa 97.4 0.0005 1.7E-08 73.6 10.9 70 487-556 270-354 (530)
199 3qww_A SET and MYND domain-con 97.4 0.00039 1.3E-08 72.3 9.0 82 493-574 302-402 (433)
200 1hz4_A MALT regulatory protein 97.3 0.00072 2.4E-08 68.4 10.4 87 487-573 91-193 (373)
201 3rjv_A Putative SEL1 repeat pr 97.3 0.00055 1.9E-08 63.7 8.2 65 488-552 84-158 (212)
202 3ly7_A Transcriptional activat 97.2 0.001 3.5E-08 66.8 9.3 71 486-557 274-344 (372)
203 3qwp_A SET and MYND domain-con 97.2 0.00091 3.1E-08 69.6 9.1 88 487-574 285-391 (429)
204 3rjv_A Putative SEL1 repeat pr 97.1 0.00056 1.9E-08 63.6 6.5 63 489-554 50-120 (212)
205 1nzn_A CGI-135 protein, fissio 97.1 0.0022 7.4E-08 53.8 9.1 73 489-561 35-112 (126)
206 1klx_A Cysteine rich protein B 97.0 0.0035 1.2E-07 53.8 9.8 65 488-554 56-128 (138)
207 1y8m_A FIS1; mitochondria, unk 96.9 0.012 4E-07 50.2 11.8 72 489-560 39-114 (144)
208 3ly7_A Transcriptional activat 96.9 0.0014 4.8E-08 65.8 7.1 87 488-574 195-330 (372)
209 1hz4_A MALT regulatory protein 96.8 0.0032 1.1E-07 63.5 9.6 69 488-556 52-126 (373)
210 3o48_A Mitochondria fission 1 96.8 0.012 4.1E-07 49.5 11.2 72 489-560 40-115 (134)
211 2ooe_A Cleavage stimulation fa 96.8 0.0046 1.6E-07 66.0 10.8 70 485-555 9-78 (530)
212 3bee_A Putative YFRE protein; 96.8 0.0024 8.3E-08 50.8 6.3 56 519-574 2-63 (93)
213 3u64_A Protein TP_0956; tetrat 96.7 0.0097 3.3E-07 57.4 10.9 70 487-556 197-273 (301)
214 3ffl_A Anaphase-promoting comp 96.6 0.0086 2.9E-07 52.5 8.6 64 486-549 60-148 (167)
215 1klx_A Cysteine rich protein B 96.5 0.0067 2.3E-07 52.0 7.6 68 495-566 31-105 (138)
216 1xi4_A Clathrin heavy chain; a 96.4 0.0071 2.4E-07 70.2 9.1 65 486-555 1102-1166(1630)
217 2xm6_A Protein corresponding t 96.3 0.012 4.2E-07 61.9 10.0 64 488-553 74-145 (490)
218 3mv2_B Coatomer subunit epsilo 96.3 0.014 4.7E-07 57.3 9.3 65 491-555 102-168 (310)
219 4b4t_Q 26S proteasome regulato 96.2 0.026 9E-07 57.8 11.9 85 486-570 132-225 (434)
220 3ffl_A Anaphase-promoting comp 96.2 0.0085 2.9E-07 52.5 6.7 86 489-574 20-142 (167)
221 2xm6_A Protein corresponding t 96.2 0.013 4.4E-07 61.7 9.2 66 488-555 362-435 (490)
222 1b89_A Protein (clathrin heavy 96.0 0.0027 9.4E-08 65.4 3.1 79 490-574 149-227 (449)
223 2v5f_A Prolyl 4-hydroxylase su 96.0 0.021 7.1E-07 46.2 7.8 45 486-530 43-87 (104)
224 3e4b_A ALGK; tetratricopeptide 96.0 0.015 5E-07 60.8 8.4 65 491-558 178-249 (452)
225 4b4t_Q 26S proteasome regulato 95.8 0.016 5.3E-07 59.5 7.5 66 491-556 6-88 (434)
226 1b89_A Protein (clathrin heavy 95.7 0.011 3.9E-07 60.8 5.9 125 442-570 124-254 (449)
227 1xi4_A Clathrin heavy chain; a 95.6 0.033 1.1E-06 64.8 9.9 69 489-557 1221-1314(1630)
228 3u64_A Protein TP_0956; tetrat 95.5 0.03 1E-06 53.9 7.8 52 505-556 179-237 (301)
229 3e4b_A ALGK; tetratricopeptide 95.2 0.047 1.6E-06 56.9 8.8 59 489-550 248-314 (452)
230 1pc2_A Mitochondria fission pr 94.7 0.061 2.1E-06 46.6 6.7 70 505-574 14-91 (152)
231 4gns_B Protein CSD3, chitin bi 94.7 0.086 3E-06 58.1 9.5 62 488-549 336-397 (754)
232 3mv2_B Coatomer subunit epsilo 93.9 0.21 7.3E-06 48.9 9.3 88 486-573 133-230 (310)
233 4h7y_A Dual specificity protei 93.8 0.84 2.9E-05 39.2 11.6 105 447-560 27-131 (161)
234 1zbp_A Hypothetical protein VP 93.6 0.35 1.2E-05 45.8 10.0 62 496-557 4-65 (273)
235 1ya0_A SMG-7 transcript varian 91.7 0.97 3.3E-05 47.3 11.3 79 491-569 154-232 (497)
236 1nzn_A CGI-135 protein, fissio 89.6 1.4 4.6E-05 36.7 8.0 47 487-533 72-118 (126)
237 2ff4_A Probable regulatory pro 89.3 1.4 4.8E-05 44.7 9.7 62 490-551 172-233 (388)
238 4e6h_A MRNA 3'-END-processing 88.7 0.77 2.6E-05 50.3 7.7 67 486-552 340-407 (679)
239 4e6h_A MRNA 3'-END-processing 86.2 4.6 0.00016 44.1 12.0 69 485-553 62-133 (679)
240 2w2u_A Hypothetical P60 katani 84.1 4.9 0.00017 30.6 7.9 33 486-518 16-48 (83)
241 2v6y_A AAA family ATPase, P60 82.7 6.1 0.00021 30.1 7.9 32 487-518 9-40 (83)
242 4b4t_R RPN7, 26S proteasome re 82.5 3.8 0.00013 42.0 8.9 85 489-573 131-220 (429)
243 1y8m_A FIS1; mitochondria, unk 82.4 3.6 0.00012 34.9 7.0 47 487-533 75-121 (144)
244 3o48_A Mitochondria fission 1 81.8 4.2 0.00014 34.0 7.1 47 487-533 76-122 (134)
245 2cpt_A SKD1 protein, vacuolar 80.4 8.9 0.0003 31.3 8.6 33 486-518 15-47 (117)
246 3txn_A 26S proteasome regulato 80.2 11 0.00036 38.1 11.0 79 494-572 104-191 (394)
247 2ff4_A Probable regulatory pro 79.0 9.6 0.00033 38.3 10.4 35 524-558 172-206 (388)
248 4a5x_A MITD1, MIT domain-conta 78.8 10 0.00035 29.0 8.0 33 486-518 13-45 (86)
249 3mkq_A Coatomer beta'-subunit; 77.9 6.8 0.00023 43.2 9.8 60 489-548 681-761 (814)
250 3mkq_B Coatomer subunit alpha; 76.8 6.4 0.00022 34.7 7.2 29 489-517 34-62 (177)
251 3kae_A CDC27, possible protein 76.0 16 0.00056 31.9 9.1 67 489-555 62-146 (242)
252 1wfd_A Hypothetical protein 15 72.9 6.7 0.00023 30.6 5.6 34 485-518 11-44 (93)
253 4h7y_A Dual specificity protei 72.7 8.3 0.00028 33.0 6.5 71 486-557 10-94 (161)
254 2uy1_A Cleavage stimulation fa 71.9 8.1 0.00028 40.3 7.8 52 505-557 195-246 (493)
255 2vkj_A TM1634; membrane protei 71.1 9.4 0.00032 29.0 5.7 49 487-535 51-102 (106)
256 2crb_A Nuclear receptor bindin 70.7 8.7 0.0003 29.6 5.5 33 486-518 12-44 (97)
257 4b4t_S RPN3, 26S proteasome re 70.3 7.9 0.00027 40.3 7.1 72 486-557 228-304 (523)
258 2v6x_A Vacuolar protein sortin 70.3 7.3 0.00025 29.7 5.2 34 485-518 9-42 (85)
259 3ax2_A Mitochondrial import re 68.7 9 0.00031 28.3 5.1 33 493-525 21-53 (73)
260 4g26_A Pentatricopeptide repea 63.2 30 0.001 36.0 10.1 64 489-552 105-169 (501)
261 4gns_B Protein CSD3, chitin bi 60.8 11 0.00036 41.6 6.1 51 524-574 338-391 (754)
262 3kae_A CDC27, possible protein 59.8 29 0.00099 30.3 7.3 53 493-550 37-89 (242)
263 2ijq_A Hypothetical protein; s 57.4 62 0.0021 27.9 9.2 63 489-551 32-103 (161)
264 1wy6_A Hypothetical protein ST 56.8 46 0.0016 28.0 7.8 62 492-553 93-155 (172)
265 3mkq_B Coatomer subunit alpha; 56.6 40 0.0014 29.6 8.0 50 495-549 11-60 (177)
266 1om2_A Protein (mitochondrial 56.2 19 0.00064 28.1 5.1 40 485-524 12-55 (95)
267 2crb_A Nuclear receptor bindin 55.5 18 0.00063 27.8 4.8 28 523-550 15-42 (97)
268 2cfu_A SDSA1; SDS-hydrolase, l 55.2 19 0.00064 39.1 6.9 50 489-538 449-498 (658)
269 4b4t_P 26S proteasome regulato 51.9 1.2E+02 0.0042 30.7 12.2 64 487-550 135-204 (445)
270 2uy1_A Cleavage stimulation fa 50.6 57 0.0019 33.7 9.6 68 489-557 286-354 (493)
271 3t5x_A PCI domain-containing p 50.1 33 0.0011 30.9 6.7 39 485-523 10-48 (203)
272 3mkr_B Coatomer subunit alpha; 50.0 1.1E+02 0.0036 29.6 10.5 24 532-555 207-230 (320)
273 3mkq_A Coatomer beta'-subunit; 48.4 53 0.0018 35.8 9.5 47 498-549 661-707 (814)
274 4fhn_B Nucleoporin NUP120; pro 48.1 31 0.0011 40.1 7.7 82 493-574 846-958 (1139)
275 3mv2_A Coatomer subunit alpha; 44.5 62 0.0021 31.3 7.8 27 531-557 215-241 (325)
276 2g0u_A Type III secretion syst 39.6 31 0.001 26.5 3.8 22 506-527 33-54 (92)
277 4g26_A Pentatricopeptide repea 39.6 1.1E+02 0.0039 31.5 9.8 68 489-556 140-210 (501)
278 3spa_A Mtrpol, DNA-directed RN 36.9 2.8E+02 0.0095 31.7 12.5 72 486-557 124-201 (1134)
279 2w2u_A Hypothetical P60 katani 35.5 55 0.0019 24.7 4.8 30 506-550 17-46 (83)
280 2ca5_A MXIH; transport protein 35.1 43 0.0015 25.2 3.9 21 506-526 27-47 (85)
281 2dl1_A Spartin; SPG20, MIT, st 34.8 30 0.001 27.9 3.3 16 505-520 19-34 (116)
282 2v6y_A AAA family ATPase, P60 33.1 62 0.0021 24.3 4.8 14 506-519 9-22 (83)
283 1zbp_A Hypothetical protein VP 31.9 2.9E+02 0.0099 25.9 10.1 38 486-523 28-65 (273)
284 2cwy_A Hypothetical protein TT 30.6 1.4E+02 0.0047 23.0 6.5 57 493-551 5-67 (94)
285 2dl1_A Spartin; SPG20, MIT, st 30.1 70 0.0024 25.8 4.7 31 487-517 20-50 (116)
286 2rpa_A Katanin P60 ATPase-cont 29.4 62 0.0021 24.1 4.0 30 489-518 12-41 (78)
287 2npm_A 14-3-3 domain containin 29.4 3.5E+02 0.012 25.2 10.1 65 487-551 144-226 (260)
288 3myv_A SUSD superfamily protei 29.3 1.1E+02 0.0038 31.1 7.6 31 522-552 189-219 (454)
289 3ax2_A Mitochondrial import re 29.0 1.2E+02 0.0042 22.1 5.5 31 527-557 21-51 (73)
290 4b4t_P 26S proteasome regulato 28.5 2.3E+02 0.0079 28.6 9.8 69 484-552 172-247 (445)
291 2yhe_A SEC-alkyl sulfatase; hy 34.5 12 0.00042 40.6 0.0 54 489-542 461-514 (668)
292 3txn_A 26S proteasome regulato 28.0 2.2E+02 0.0076 28.3 9.2 67 485-551 135-209 (394)
293 3kez_A Putative sugar binding 27.4 1.2E+02 0.0041 30.9 7.4 31 522-552 195-225 (461)
294 2br9_A 14-3-3E, 14-3-3 protein 26.6 2.6E+02 0.0088 25.6 8.6 65 487-551 118-201 (234)
295 1wfd_A Hypothetical protein 15 26.5 91 0.0031 23.9 4.8 15 505-519 12-26 (93)
296 3t5x_A PCI domain-containing p 26.5 1.2E+02 0.0043 26.9 6.5 35 523-557 14-48 (203)
297 3t5v_B Nuclear mRNA export pro 26.3 2.3E+02 0.008 28.8 9.2 63 494-556 181-254 (455)
298 4gq2_M Nucleoporin NUP120; bet 25.9 86 0.0029 35.5 6.4 52 495-550 816-867 (950)
299 3lew_A SUSD-like carbohydrate 25.6 1.4E+02 0.0048 30.7 7.6 31 522-552 202-232 (495)
300 2v6x_A Vacuolar protein sortin 25.0 1E+02 0.0035 23.1 4.8 32 505-551 10-41 (85)
301 2cpt_A SKD1 protein, vacuolar 24.9 88 0.003 25.3 4.6 15 505-519 15-29 (117)
302 4a5x_A MITD1, MIT domain-conta 24.8 2.2E+02 0.0076 21.4 7.5 23 529-551 22-44 (86)
303 3mcx_A SUSD superfamily protei 24.8 1.3E+02 0.0043 30.9 7.0 31 522-552 201-231 (477)
304 1ya0_A SMG-7 transcript varian 24.6 83 0.0028 32.6 5.5 34 525-558 154-187 (497)
305 2ymb_A MITD1, MIT domain-conta 22.8 18 0.00061 33.9 0.0 34 485-518 19-52 (257)
306 4gq2_M Nucleoporin NUP120; bet 20.9 2.3E+02 0.0078 32.0 8.7 65 493-557 844-932 (950)
307 3dza_A Uncharacterized putativ 20.6 2E+02 0.0068 25.4 6.2 63 489-551 108-178 (191)
No 1
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=4.7e-93 Score=745.89 Aligned_cols=406 Identities=28% Similarity=0.331 Sum_probs=342.5
Q ss_pred chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCCccccCCChhhh
Q 008170 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK 99 (575)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~ 99 (575)
+.+|++|+++.+++||+++|| +|||++.++++++++|+ .+...||||||||+|||||+++|++||+||+.|
T Consensus 13 g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~- 90 (434)
T 2dc0_A 13 GRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKGMPTRAGTKAP- 90 (434)
T ss_dssp TSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTSCBTTBCCCTTCSSC-
T ss_pred CCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHHhcCCCCCCcCCeeEEEEeccccCCcccCCCCccc-
Confidence 449999999999999999999 99999998877665553 345679999999999999999999999999988
Q ss_pred ccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCC
Q 008170 100 RDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT 179 (575)
Q Consensus 100 ~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDt 179 (575)
. .++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++++|+||||
T Consensus 91 ~--~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDt 168 (434)
T 2dc0_A 91 L--PPLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDT 168 (434)
T ss_dssp C--CCCCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTBBCCSSSHHHHHHHHHTSSSCEEEECS
T ss_pred C--CCCCCCHHHHHHHHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHcCCCceeeecCC
Confidence 2 34389999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc--ccCceEEeccchhhh
Q 008170 180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP--RRARRLIFADDIFQL 257 (575)
Q Consensus 180 gGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~ 257 (575)
|||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+. ..++ ..+.|+.+..+.+.
T Consensus 169 gGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~-~~d~~~~~~lrig~~~~~~~- 246 (434)
T 2dc0_A 169 GGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE-SIPLEGVQNPVFGVPLDFLE- 246 (434)
T ss_dssp SSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTS-CCCCCCCCSCEEEECHHHHT-
T ss_pred ChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHHHhCC-CCCcccccCCEEEEECcccc-
Confidence 9999999999999999999999999999999999999999999999999999999876 3332 23456666655431
Q ss_pred cCCCchHHHHHHHHHHHHHhCCCCCccccccchhhc-cCcchHHhhhccCCCCCchhHHHHHHHHHHHHHhhhhhhhHHH
Q 008170 258 SKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIAS-NVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEE 336 (575)
Q Consensus 258 ~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~-~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~ 336 (575)
...++++.++++++++.|+..+. .+++ .+| +... ...+..+...|.+..+.+
T Consensus 247 -~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~p-~~~~-----------------~~~~~~~~~~e~~~~~~~ 299 (434)
T 2dc0_A 247 -GRLGVEVRKAFTRLLEDLPALRA--------EVREVSLP-LEGV-----------------YEVYTRLVRYEAARIHEK 299 (434)
T ss_dssp -TCSCHHHHHHHHHHHHHTTTTTC--------EEEECCCC-CTTH-----------------HHHHHHHHHHHHHHHSHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHCCC--------EEEEeCCC-cHHH-----------------HHHHHHHHHHHHHHHHHH
Confidence 23467899999999999874432 2221 223 2211 111122334455556666
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCCccccc---c-hhhHh
Q 008170 337 WVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTY---S-AEFHD 412 (575)
Q Consensus 337 ~~~~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~---~-~~~~~ 412 (575)
++......+++.++.+++.+..++..+|.++++.|+.+++.++++|+++|+||+||+|.+||++++.... . .....
T Consensus 300 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~ 379 (434)
T 2dc0_A 300 ALKEHPEGFSPQVREALLAGLALTEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHRE 379 (434)
T ss_dssp HHHHCGGGSCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEESCSSSCCBTTCCEEEETTEEEEHHH
T ss_pred HHHhchhhcCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCCCCCccCcccccccccchhhhhh
Confidence 6666667799999999999999999999999999999999999999999999999999999999864210 0 11112
Q ss_pred hhhccccccccCCCCcccccccccCCCCcccccccccCCchhHHhHHHHHHHH
Q 008170 413 RTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDS 465 (575)
Q Consensus 413 ~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~ 465 (575)
.+..||.++|++|+|++|||+|+.+|||+||||+|++|+|..||+++.++|+.
T Consensus 380 ~~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~lE~~ 432 (434)
T 2dc0_A 380 AFITLTLPFSLLGVPTLALPFAKVEGMPVGLQVVGAYGEDGKVLALGGWLEAR 432 (434)
T ss_dssp HHHTTTHHHHHTTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHTT
T ss_pred hhhhhhhhhhhhCCCeEEEecCCCCCCCeEEEEECCCCchHHHHHHHHHHHHh
Confidence 33568999999999999999999899999999999999999999999998863
No 2
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=6.8e-92 Score=748.07 Aligned_cols=426 Identities=23% Similarity=0.298 Sum_probs=333.6
Q ss_pred HHHHHhhch-----hHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC--------CCCCCCCCCCceEEeeccccc
Q 008170 20 VIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP--------PPAARQPLAGLKFAIKDVFDV 86 (575)
Q Consensus 20 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~--------~~~~~gpL~Gvpi~vKD~~~~ 86 (575)
.++++|+++ +|++|+++.+++||+++||.+|||++.++++++++|+ .+.. ||||||||+|||||++
T Consensus 6 ~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~-gpL~GvPi~vKD~~~v 84 (485)
T 3ip4_A 6 ESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMD-GKLFGIPMGIKDNIIT 84 (485)
T ss_dssp CCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCC-STTTTCEEEEETTBCB
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCCC-CCcCCCEEEEEcCccc
Confidence 356666644 9999999999999999999999999998876655442 3445 9999999999999999
Q ss_pred CCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 008170 87 KGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAV 166 (575)
Q Consensus 87 ~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaV 166 (575)
+|++||+||+.+.+ .++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+||||||||||||
T Consensus 85 ~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgGsAaaV 162 (485)
T 3ip4_A 85 NGLETTCASKMLEG--FVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAV 162 (485)
T ss_dssp TTBCCCTTSGGGTT--CCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHH
T ss_pred CCCccCCCChhhcC--CCCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccHHHHHh
Confidence 99999999999875 5788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc----
Q 008170 167 AAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP---- 242 (575)
Q Consensus 167 Aag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~---- 242 (575)
|+|++++|||||||||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++
T Consensus 163 Aag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~d~~d~~~~~ 242 (485)
T 3ip4_A 163 AAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAP 242 (485)
T ss_dssp HTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTTSCC
T ss_pred hcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCCCcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987543221
Q ss_pred -------------ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCC
Q 008170 243 -------------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPE 309 (575)
Q Consensus 243 -------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~ 309 (575)
..+.|+.+..+.+. ...++++.++++++++.|+..+. +.++..+|.+......+
T Consensus 243 ~~~~~~~~~~~~~~~~lrigv~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~-------~v~~~~~p~~~~~~~~~---- 309 (485)
T 3ip4_A 243 VDDVDFTSEIGKDIKGLKVALPKEYLG--EGVADDVKEAVQNAVETLKSLGA-------VVEEVSLPNTKFGIPSY---- 309 (485)
T ss_dssp CCCCCCSTTTTCCCTTCEEEEEGGGGS--TTSCHHHHHHHHHHHHHHHHTTC-------EEEEECCTTGGGHHHHH----
T ss_pred cCccchhhhhccCccCcEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCCC-------EEEEeCCCcHHHHHHHH----
Confidence 12346666655432 23467899999999999863332 01112233322111100
Q ss_pred CchhHHHHHHHHHHHHHhhh----------hhhhHHHHHHHcCCCCCHHHHHHHHHHhc-----CCHHHHHHHHHHHHHH
Q 008170 310 NGTATLKALSSVMLSLQRYE----------FKTIYEEWVKSAKPRLGYNVFERVLEAIN-----TTQDNIKILYKVRNEM 374 (575)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~~e----------~~~~~~~~~~~~~~~l~~~~~~~l~~~~~-----~s~~~~~~a~~~r~~~ 374 (575)
......+....+..+. ....++.+.......+++.++.++..+.. ....+|.++++.|+.+
T Consensus 310 ----~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~ 385 (485)
T 3ip4_A 310 ----YVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLI 385 (485)
T ss_dssp ----HHHHHHHHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhhhhhhccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHH
Confidence 0000011111111100 00011122222233577888888766542 1224588899999999
Q ss_pred HHHHHHHhCCCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCcccccccccCCCCcccccccccCCchh
Q 008170 375 RAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKF 454 (575)
Q Consensus 375 ~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ 454 (575)
++.++++|+++|+||+||+|.+||++++...+..... ....||.++|++|+|++|||+|+.+|||+||||+|++|+|..
T Consensus 386 ~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlqlvg~~~~d~~ 464 (485)
T 3ip4_A 386 KNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMY-ANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPFDEKT 464 (485)
T ss_dssp HHHHHHHHTTCSEEEEESSSSSCCBTTTSTTCHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECSTTCHHH
T ss_pred HHHHHHHHhcCCEEEeCCCCCCCCCcccccCChHHHh-hhhhhhhhhHhhCCCeEEEeCCcCCCCCEeEEEEcCCCCHHH
Confidence 9999999999999999999999999986432221111 122489999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHh
Q 008170 455 LLDTVLDLYDSL 466 (575)
Q Consensus 455 ll~~a~~~~~~~ 466 (575)
||++++++|+..
T Consensus 465 lL~~A~~lE~~~ 476 (485)
T 3ip4_A 465 LYRVAYQYETQY 476 (485)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhc
Confidence 999999999854
No 3
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=7.8e-91 Score=733.92 Aligned_cols=417 Identities=26% Similarity=0.353 Sum_probs=333.5
Q ss_pred chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCCCCCCCCCCCceEEeecccccCCccccCCChhhhccCCCCC
Q 008170 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAE 106 (575)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~~~~~~ 106 (575)
+.+|++|+++.+++||+++||.+|||++.+ ++++++|++.....|||||||+|||||+++|++||+||+.|.+ .++.
T Consensus 13 g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~~~pL~GvPi~vKD~~~~~G~~tt~Gs~~~~~--~~~~ 89 (471)
T 3kfu_E 13 GEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPGLPLAGLVVAVKDNIATRGLRTTAGSRLLEN--FVPP 89 (471)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCCSCTTTTCEEEEETTBCCTTSCCCTTCSTTTT--CCCS
T ss_pred CCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCccCCcCCCeEEEECCcccCCccccccCHhHcC--CCCC
Confidence 449999999999999999999999999999 8887776554444599999999999999999999999999875 5778
Q ss_pred CchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCccccc
Q 008170 107 RTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVP 186 (575)
Q Consensus 107 ~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiRiP 186 (575)
+||++|+||++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++++|+|||||||||+|
T Consensus 90 ~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtDtgGSiR~P 169 (471)
T 3kfu_E 90 YEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQP 169 (471)
T ss_dssp SCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHH
T ss_pred CChHHHHHHHHCCCEEEeecCcCchhcCCCCCCCCCCCcCCCCccCcCCCCCcHHHHHHHHCCCCccccccCCCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc----------------ccCceEEe
Q 008170 187 ASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----------------RRARRLIF 250 (575)
Q Consensus 187 Aa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----------------~~~~~l~~ 250 (575)
|+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++ ..+.|+.+
T Consensus 170 Aa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~~~~~~lrIgv 249 (471)
T 3kfu_E 170 AAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLPPRFQEALEGPLPPLRLGV 249 (471)
T ss_dssp HHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCTTCTTCCCCCCCTTCCSCCCCSSCEEEE
T ss_pred hhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHHhcCCCcccccccCCCcchhhhhccCCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999987543221 12345666
Q ss_pred ccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhHHHHHHHHHHHHHhhhh
Q 008170 251 ADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEF 330 (575)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~ 330 (575)
..+.+ ...++++.++++++++.|+..+. +.++..+|.+......+ ......+....+.++..
T Consensus 250 ~~~~~---~~~~p~v~~a~~~a~~~L~~~G~-------~v~~v~~p~~~~~~~~~--------~~~~~~e~~~~~~~~~~ 311 (471)
T 3kfu_E 250 VREAL---AGNSPGVERALEEALKVFRELGL-------SVREVSWPSLPQALAAY--------YILAPAEASSNLARYDG 311 (471)
T ss_dssp EGGGT---TTCCHHHHHHHHHHHHHHHTTTC-------EEEEECCTTGGGHHHHH--------HHHHHHHHHHHGGGCST
T ss_pred ECCcc---CCCCHHHHHHHHHHHHHHHHcCC-------eeeeecCccHHHHHHHH--------HHHHHHHHHHHHHHhhh
Confidence 65543 23467899999999999974442 11122233332211100 00001111111111100
Q ss_pred --------hhhHHHHHHHcCCCCCHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q 008170 331 --------KTIYEEWVKSAKPRLGYNVFERVLEAINT-----TQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPP 397 (575)
Q Consensus 331 --------~~~~~~~~~~~~~~l~~~~~~~l~~~~~~-----s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~a 397 (575)
...+.+++...+..+++.++.++..+... +..+|.++++.|..+++.++++|+++|+||+||+|.+|
T Consensus 312 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a 391 (471)
T 3kfu_E 312 TLYGRRAAGEEVEGMMEATRALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPA 391 (471)
T ss_dssp TTTSCCCCCSSSHHHHHHHHTTSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCSEEEEESCSSSC
T ss_pred hccccccchhhHHHHHHhhhhhcCHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCcCCCC
Confidence 01222333333333899999888766433 33489999999999999999999999999999999999
Q ss_pred CcCCcccccchhhHhhhhccccccccCCCCcccccccccCCCCcccccccccCCchhHHhHHHHHHHHh
Q 008170 398 LKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSL 466 (575)
Q Consensus 398 p~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~~ 466 (575)
|++++.......+.. ..||.++|++|+|++|||+|+.+|||+||||+|++|+|..||+++.++|+..
T Consensus 392 ~~~~~~~~~~~~~~~--~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~LL~~A~~lE~~~ 458 (471)
T 3kfu_E 392 FPFGARRDPLAMYRE--DLYTVGANLTGLPALSFPAGFEGHLPVGLQLLAPWGEDERLLRAALAFEEAT 458 (471)
T ss_dssp CBTTTTCSHHHHHGG--GTTTHHHHHHCCCEEEEEEEEETTEEEEEEEECSTTCHHHHHHHHHHHHHHS
T ss_pred CccccccchHHHHHH--hhhhhcchhhCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 999864321111221 2389999999999999999998899999999999999999999999999854
No 4
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=4.6e-90 Score=718.16 Aligned_cols=394 Identities=24% Similarity=0.301 Sum_probs=334.2
Q ss_pred chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCCCCCCCCCCCceEEeecccccCCccccCCChhhhccCCCCC
Q 008170 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAE 106 (575)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~~~~~~ 106 (575)
+.+|++|+++.+++||++.|+.+|||++.+++++ + ...||||||||+|||||+++|++||+||+.|.+ .++.
T Consensus 14 g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~-----~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~--~~~~ 85 (414)
T 1o9p_A 14 GELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A-----QASGPLRGIAVGIKDIIDTANMPTEMGSEIYRG--WQPR 85 (414)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C-----CSSSTTTTCEEEEETTBCCSSSCCCTTSGGGTT--CCCS
T ss_pred CCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c-----ccCCCcCCCEEEEEcccccCCcccCcCCHhhcc--CCCC
Confidence 4499999999999999999999999999988776 2 456999999999999999999999999999975 5678
Q ss_pred CchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCccccc
Q 008170 107 RTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVP 186 (575)
Q Consensus 107 ~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiRiP 186 (575)
+||++|+|||+|||||+||||||||++ .|+ |+|+||||++|+|||||||||||||+|++++|+|||||||||+|
T Consensus 86 ~dA~~V~rL~~aGAii~GKTn~~Efa~----~n~--G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiP 159 (414)
T 1o9p_A 86 SDAPVVMMLKRAGATIIGKTTTTAFAS----RDP--TATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRP 159 (414)
T ss_dssp SCCHHHHHHHHTTCEEEEEECCCGGGS----SCC--CSCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHH
T ss_pred CCHHHHHHHHHCCCEEEEecCCchhhc----CCC--CCCCCCCCCCCCCCcchHHHHHHHHcCCCceEEeeCCchhhhHh
Confidence 999999999999999999999999998 455 99999999999999999999999999999999999999999999
Q ss_pred cccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCC---CcccCceEEeccchhhhcCCCch
Q 008170 187 ASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV---EPRRARRLIFADDIFQLSKVPKL 263 (575)
Q Consensus 187 Aa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~ 263 (575)
|+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+.. ....+.|+.+..+.+. ...++
T Consensus 160 Aa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~~~~~~~~~~~lrig~~~~~~~--~~~~~ 237 (414)
T 1o9p_A 160 AAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVRQEFA--GAVEP 237 (414)
T ss_dssp HHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSCCCCSSCEEEECCCGGG--CCCCH
T ss_pred HHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHHHHHHHHHhcCCCccccccCCCCCEEEEECcccc--CCCCH
Confidence 999999999999999999999999999999999999999999999998875411 1123456666555431 23467
Q ss_pred HHHHHHHHHHHHHhCCCCCccccccchhhc-cCcchHHhhhccCCCCCchhHHHHHHHHHHHHHhhhhhhhHHHHHHHcC
Q 008170 264 KTIHVISKAIESLSGYQNPEHMNVGQYIAS-NVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAK 342 (575)
Q Consensus 264 ~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~-~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~ 342 (575)
++.++++++++.|+..+ +.+++ .+|.. ...+...+..+..+|.+..+..++....
T Consensus 238 ~v~~a~~~a~~~L~~~G--------~~v~~~~~~~~----------------~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 293 (414)
T 1o9p_A 238 AAEQGLQAAIKAAERAG--------ASVQAIDLPEA----------------VHEAWRIHPIIQDFEAHRALAWEFSEHH 293 (414)
T ss_dssp HHHHHHHHHHHHHHHTT--------CEEEECCCCHH----------------HHHHHHHHHHHHHHHHHHHTHHHHHHSG
T ss_pred HHHHHHHHHHHHHHHCC--------CEEEEecCcch----------------HHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 89999999999886333 22221 22211 1111222233445566667777777777
Q ss_pred CCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccc
Q 008170 343 PRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGS 422 (575)
Q Consensus 343 ~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n 422 (575)
..+++.++.+++.+..++..+|.++++.|+.+++.++++|+++|+||+||+|.+||+++..... ...||.++|
T Consensus 294 ~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~-------~~~~t~~~n 366 (414)
T 1o9p_A 294 DEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTG-------DPRYNRLWT 366 (414)
T ss_dssp GGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCCCC-------CGGGTHHHH
T ss_pred hhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccccCCc-------ccchhhhhH
Confidence 7899999999999999999999999999999999999999999999999999999998653211 125799999
Q ss_pred cCCCCcccccccccCCCCcccccccccCCchhHHhHHHHHHHHhh
Q 008170 423 MSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQ 467 (575)
Q Consensus 423 l~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~~~ 467 (575)
++|+|++|||+|+..|||+||||+|++|+|..||+++.++|+.+.
T Consensus 367 l~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~a~~le~~~~ 411 (414)
T 1o9p_A 367 LMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHALATAWFLEDALA 411 (414)
T ss_dssp HHCCCEEEEEEEEETTEEEEEEEEESTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCCeEEeeCCCCCCCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence 999999999999877999999999999999999999999998654
No 5
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=4e-91 Score=738.31 Aligned_cols=426 Identities=24% Similarity=0.314 Sum_probs=334.2
Q ss_pred HHHHhhc-----hhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCCCC-CCCCCCCceEEeecccccCCccccCC
Q 008170 21 IGVSVVG-----FVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPA-ARQPLAGLKFAIKDVFDVKGYVTGFG 94 (575)
Q Consensus 21 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~~~-~~gpL~Gvpi~vKD~~~~~G~~tt~G 94 (575)
++++|++ .+|++|+++.+++||+++||.+|||++.++++++++|++.. ..||||||||+|||||+++|++||+|
T Consensus 6 sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~gpL~GvPi~vKD~~~~~G~~tt~G 85 (478)
T 3h0l_A 6 SLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKERELPLFGIPIAVKDNILVEGEKTTCA 85 (478)
T ss_dssp CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCTTSTTTTCEEEEETTBCCTTSBCCTT
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchhcCCcCCceEEEEcCccCCCCCcCCc
Confidence 4555553 39999999999999999999999999998877665554322 27999999999999999999999999
Q ss_pred ChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCcee
Q 008170 95 SPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFA 174 (575)
Q Consensus 95 s~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a 174 (575)
|+.+.+ .++.+||++|+||++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++++|
T Consensus 86 s~~~~~--~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~a 163 (478)
T 3h0l_A 86 SKILEN--FVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVS 163 (478)
T ss_dssp CGGGTT--CBCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTBCCCSSSHHHHHHHHHTSSSCE
T ss_pred CHhhcC--CCCCCCHHHHHHHHHCCCEEEEEeCchhhhcCCCCCCCCCCCcCCCccCCCCCCcchHHHHHHHHCCCCcee
Confidence 999875 577899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc------------
Q 008170 175 LGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP------------ 242 (575)
Q Consensus 175 iGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~------------ 242 (575)
+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++
T Consensus 164 ~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~~~~~p~~~~~~ 243 (478)
T 3h0l_A 164 LGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVPEWSE 243 (478)
T ss_dssp EEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTTSCCCCCCCHHH
T ss_pred eecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHHHHHHHHHhcCCCcccccccccCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999987653221
Q ss_pred -----ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhHHHH
Q 008170 243 -----RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKA 317 (575)
Q Consensus 243 -----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~ 317 (575)
..+.|+.+..+.+. ...++++.++++++++.|+..+. +.++..+|.+......+ ....
T Consensus 244 ~~~~~~~~lrIgv~~~~~~--~~~~p~v~~a~~~a~~~L~~~G~-------~v~~v~~p~~~~~~~~~--------~~~~ 306 (478)
T 3h0l_A 244 EVKKEVKGLKIGLPKEFFE--YELQPQVKEAFENFIKELEKEGF-------EIKEVSLPHVKYSIPTY--------YIIA 306 (478)
T ss_dssp HTTCCCTTCEEEEEGGGGG--SCCCHHHHHHHHHHHHHHHHTTC-------EEEEECCTTGGGHHHHH--------HHHH
T ss_pred hhccCCCCCEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCCC-------EEEEeCCCcHHHHHHHH--------HHHH
Confidence 12346666655432 23467899999999999863332 01112233322111100 0000
Q ss_pred HHHHHHHHHhhh----------hhhhHHHHHHHcCCCCCHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHh
Q 008170 318 LSSVMLSLQRYE----------FKTIYEEWVKSAKPRLGYNVFERVLEAINT-----TQDNIKILYKVRNEMRAALQRLL 382 (575)
Q Consensus 318 ~~~~~~~l~~~e----------~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~-----s~~~~~~a~~~r~~~~~~~~~~~ 382 (575)
..+....+.++. .....+.+.......+++.++.++..+... ...+|.++++.|+.+++.++++|
T Consensus 307 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~ 386 (478)
T 3h0l_A 307 PSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITNDFLKAF 386 (478)
T ss_dssp HHHHHHHTTTCSSSSSSCCCSCCSSHHHHHHHHHHHHSCHHHHHHHHHHHHHTSTTTTTTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhhcccccccccHHHHHHHhhhhhcCHHHHHHHHhhchhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111111100 000111122222345788888888766422 23458889999999999999999
Q ss_pred CCCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCcccccccccCCCCcccccccccCCchhHHhHHHHH
Q 008170 383 KDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDL 462 (575)
Q Consensus 383 ~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~ 462 (575)
+++|+||+||+|.+||++++......... ....||.++|++|+|++|||+|+.+|||+||||+|++|+|..||+++.++
T Consensus 387 ~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~LL~~A~~l 465 (478)
T 3h0l_A 387 EEVDVIASPTTPTLPFKFGERLENPIEMY-LSDILTVPANLAGLPAISIPIAWKDGLPVGGQLIGKHWDETTLLQISYLW 465 (478)
T ss_dssp TTCSEEEEESCSSSCCBTTTTSSSHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEEECTTCHHHHHHHHHHH
T ss_pred hcCCEEEcCCCCCCCCCcccccCChHhhh-hhhhhhhhhHhhCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 99999999999999999986432221111 12248999999999999999999999999999999999999999999999
Q ss_pred HHHh
Q 008170 463 YDSL 466 (575)
Q Consensus 463 ~~~~ 466 (575)
|+..
T Consensus 466 E~~~ 469 (478)
T 3h0l_A 466 EQKF 469 (478)
T ss_dssp HHHS
T ss_pred HHhc
Confidence 9854
No 6
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=1.1e-90 Score=740.92 Aligned_cols=421 Identities=20% Similarity=0.215 Sum_probs=340.8
Q ss_pred HHHHhhc-----hhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCCCCCCCCCCCceEEeeccc-ccCCccccCC
Q 008170 21 IGVSVVG-----FVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVF-DVKGYVTGFG 94 (575)
Q Consensus 21 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~~~~~gpL~Gvpi~vKD~~-~~~G~~tt~G 94 (575)
++++|++ .+|++|+++.+++||++.|+.+|||++.++++++++|+. . .||||||||+||||| +++|++||+|
T Consensus 9 ~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d-~gpL~GvPi~vKD~~~~v~G~~Tt~G 86 (493)
T 3a2q_A 9 DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A-SGPFAGVPYLLKDLTVVSQGDINTSS 86 (493)
T ss_dssp CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C-CSTTTTCEEEEESSSSCCTTSBCCTT
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c-CCCcCCcEEEEecCCcCcCCCccccc
Confidence 5666664 499999999999999999999999999988776666554 3 699999999999999 9999999999
Q ss_pred ChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCcee
Q 008170 95 SPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFA 174 (575)
Q Consensus 95 s~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a 174 (575)
|+.|...+.++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++++|
T Consensus 87 s~~~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAAAVAaG~~~~a 166 (493)
T 3a2q_A 87 IKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVA 166 (493)
T ss_dssp CHHHHHHTCBCSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEE
T ss_pred ChhhhhcCCCCCCCHHHHHHHHHCCCceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCcee
Confidence 99997112578899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCccccccccccceeeeCCCCCccCCCC--C-CCCCCCccccccccCHHHHHHHHHHHccCCCCCc---------
Q 008170 175 LGTDTIGCVRVPASFCGILGYRPSHGTVSMIGV--L-PNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP--------- 242 (575)
Q Consensus 175 iGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~--~-p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~--------- 242 (575)
+|||||||||+||+||||||||||+||||+.|+ + |.++++|++|||+||++|++.+++++.+.+..++
T Consensus 167 lGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~~p~~~ 246 (493)
T 3a2q_A 167 HGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAPTASRP 246 (493)
T ss_dssp EEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHHHHHHHBSCCTTCSCCCCCCSSC
T ss_pred eecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCHHHHHHHHHHHcCCCCCCcccccCCCcc
Confidence 999999999999999999999999999999998 5 7788999999999999999999999987543221
Q ss_pred --------ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhc-cCcchHHhhhccCCCCCchh
Q 008170 243 --------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIAS-NVPSLKGLRAQSTSPENGTA 313 (575)
Q Consensus 243 --------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~-~~p~l~~~~~~~~~~~~~~~ 313 (575)
..+.|+.+..+.+......++++.++++++++.|+..+. .|++ .+|.+.. .
T Consensus 247 ~~~~~~~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~--~---------- 306 (493)
T 3a2q_A 247 YAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGH--------DVNDAYPEALGD--R---------- 306 (493)
T ss_dssp HHHHTTSCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHTTC--------EEEECCCGGGGC--C----------
T ss_pred hhhhcccCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHHCCC--------EEEEeCCCccCH--H----------
Confidence 123356665543210112467899999999999863332 2221 1221210 0
Q ss_pred HHHHHHHHHHHHHhhhhhh---hHHHHHH--HcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHh-CCCCE
Q 008170 314 TLKALSSVMLSLQRYEFKT---IYEEWVK--SAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLL-KDDKI 387 (575)
Q Consensus 314 ~~~~~~~~~~~l~~~e~~~---~~~~~~~--~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~-~~~Dv 387 (575)
.+...+..+...|++. .+..++. .....+++.++.+++.+..++..+|.++++.|+++++.+.++| +++|+
T Consensus 307 ---~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~ 383 (493)
T 3a2q_A 307 ---SFLKDYSTICDVAIAREIERNGELIGRPLTEDDVEWTSWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDL 383 (493)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTTSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhcCccChhhcCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 0011112222334433 2233331 2345688999999999999999999999999999999999999 99999
Q ss_pred EEecCCCCCCCcCCccccc---------ch--hhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhH
Q 008170 388 LVIPTVSDPPLKLNTKKTY---------SA--EFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFL 455 (575)
Q Consensus 388 Ll~Pt~~~~ap~~~~~~~~---------~~--~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~l 455 (575)
||+||+|.+||++++.... .. .....+..||.++|++|+|++|||+|++ +|||+||||+|++|+|..|
T Consensus 384 ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGvQlvg~~~~d~~l 463 (493)
T 3a2q_A 384 LILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLL 463 (493)
T ss_dssp EEEESCSSCCCBTTTTCCCTTCCCCSSCGGGSHHHHHHHTTTTHHHHHCCCEEEEEEEECTTSCEEEEEEEESTTCHHHH
T ss_pred EEcCCCCCCCCCCcccccccccccccccchhhhhhhhhhcccccccccCCCceeccCCcCCCCCCeEEEEecCCCChHHH
Confidence 9999999999999864321 00 0112345689999999999999999986 9999999999999999999
Q ss_pred HhHHHHHHHHh
Q 008170 456 LDTVLDLYDSL 466 (575)
Q Consensus 456 l~~a~~~~~~~ 466 (575)
|+++.++|+..
T Consensus 464 L~~A~~lE~~~ 474 (493)
T 3a2q_A 464 LQVAAQLEGAL 474 (493)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhc
Confidence 99999999864
No 7
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=9.5e-90 Score=730.68 Aligned_cols=403 Identities=23% Similarity=0.287 Sum_probs=326.0
Q ss_pred chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCCCCCCCCCCCceEEeecccccCCccccCCChhhhccCCCCC
Q 008170 27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAE 106 (575)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~~~~~~ 106 (575)
+.+|++|+++.+++||+++||.+|||++.++++++.+ . ||||||||+|||||+++|++||+||+.|.+ .++.
T Consensus 19 g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~ald~-----~-gpL~GvPi~vKD~~~v~G~~Tt~Gs~~~~~--~~~~ 90 (476)
T 2gi3_A 19 SEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEK-----K-GKFWGIPVAIKDNILTLGMRTTCASRILEN--YESV 90 (476)
T ss_dssp CHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCCCC-----C-STTTTCEEEEETTBCCSSSCCCTTCGGGTT--CCCC
T ss_pred CCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhhhc-----c-CCcCCceEEEEcCccCCCCccCccChhhcC--CCCC
Confidence 4599999999999999999999999999998877621 2 999999999999999999999999999974 5788
Q ss_pred CchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCccccc
Q 008170 107 RTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVP 186 (575)
Q Consensus 107 ~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiRiP 186 (575)
+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++++|||||||||||+|
T Consensus 91 ~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiP 170 (476)
T 2gi3_A 91 FDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQP 170 (476)
T ss_dssp SCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHH
T ss_pred CChHHHHHHHHCCCEEEEecCchhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHcCCCceEeecCCCchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc----------------ccCceEEe
Q 008170 187 ASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----------------RRARRLIF 250 (575)
Q Consensus 187 Aa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----------------~~~~~l~~ 250 (575)
|+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++ ..+.|+.+
T Consensus 171 Aa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~~p~~~~~~~~~~~~~lrig~ 250 (476)
T 2gi3_A 171 ASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLSEIEEGVSGMKFAV 250 (476)
T ss_dssp HHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTBTTCCSCCCCSSTTTTSCCTTCEEEE
T ss_pred HHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHHHHHHHHHhhCCCCCCccccCCCcchhhhhhcCCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999986543221 12346666
Q ss_pred ccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchh-hccCcchHHhhhccCCCCCchhHHHHHHHHHHHHHhhh
Q 008170 251 ADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYI-ASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYE 329 (575)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v-~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e 329 (575)
..+.+. ...++++.++++++++.|+..+. .+ +..+|.+..... .+..+...|
T Consensus 251 ~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~p~~~~~~~-----------------~~~~~~~~e 303 (476)
T 2gi3_A 251 PEEIYE--HDIEEGVSERFEEALKLLERLGA--------KVERVKIPHIKYSVA-----------------TYYVIAPAE 303 (476)
T ss_dssp EGGGGG--SCCCHHHHHHHHHHHHHHHHTTC--------EEEEECCTTGGGHHH-----------------HHHHHHHHH
T ss_pred ECcccc--CCCCHHHHHHHHHHHHHHHHCCC--------EEEEeCCCchHHHHH-----------------HHHHHHHHH
Confidence 655431 23467899999999999864332 11 112232221100 001111112
Q ss_pred hhhh-----------------HHHHHHH-cCCCCCHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHHHHhCCCC
Q 008170 330 FKTI-----------------YEEWVKS-AKPRLGYNVFERVLEAINTTQ-----DNIKILYKVRNEMRAALQRLLKDDK 386 (575)
Q Consensus 330 ~~~~-----------------~~~~~~~-~~~~l~~~~~~~l~~~~~~s~-----~~~~~a~~~r~~~~~~~~~~~~~~D 386 (575)
+... +.+++.. ....+++.++.++..+..++. .+|.++++.|+.+++.++++|+++|
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D 383 (476)
T 2gi3_A 304 ASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYD 383 (476)
T ss_dssp HHTC------------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhhccccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1111 1112221 234577888888877654433 3788899999999999999999999
Q ss_pred EEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCcccccccccCCCCcccccccccCCchhHHhHHHHHHHHh
Q 008170 387 ILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSL 466 (575)
Q Consensus 387 vLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~~ 466 (575)
+||+||+|.+||++++.......+. ...||.++|++|+|++|||+|+.+|||+||||+|++|+|..||+++.++|+..
T Consensus 384 ~ll~Pt~~~~a~~~~~~~~~~~~~~--~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~lE~~~ 461 (476)
T 2gi3_A 384 AILTPTSPVTAFKIGEIKDPLTYYL--MDIFTIPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFRIARAIEKNS 461 (476)
T ss_dssp EEEEESCSSCCCBTTTCCCHHHHHT--TTTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred EEEeCCCCCCCCcccccccchhhhh--ccceeccccccCCceEEEecccCCCCCeEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999986211111121 23589999999999999999999999999999999999999999999999864
No 8
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=7.4e-89 Score=727.90 Aligned_cols=407 Identities=23% Similarity=0.283 Sum_probs=325.6
Q ss_pred HHHHhh-----chhHHHHHHHHhhcccccCC---CCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccc
Q 008170 21 IGVSVV-----GFVVLAETLRRRRNPKLNGR---VDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFD 85 (575)
Q Consensus 21 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~ 85 (575)
++.+|+ +.+|++|+++.+++||+++| |.+|||++.+++ ++++|+ .+...||||||||+|||||+
T Consensus 12 ~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~ 90 (503)
T 1m22_A 12 DVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPLLLKDNIN 90 (503)
T ss_dssp CHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEEEEETTBC
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCCCCCcCCceeEeecccc
Confidence 455555 44999999999999999999 999999999877 665543 34567999999999999999
Q ss_pred cCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccc-----cCCCCCCCCCCCCCCCCCCCCCCCCCh
Q 008170 86 VKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAF-----GITGENKHYGTPVNPQMPSHIPGGSSS 160 (575)
Q Consensus 86 ~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~-----~~~~~n~~~G~~~NP~~~~~~~GGSSg 160 (575)
++|++||+||+.|.+ .++ +||++|+|||+|||||+||||||||++ +.+|+|++||+|+||||++|+||||||
T Consensus 91 v~G~~Tt~Gs~~~~~--~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~~~pGGSSg 167 (503)
T 1m22_A 91 AAPMATSAGSLALQG--FRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSS 167 (503)
T ss_dssp CTTSCCCTTCGGGTT--CCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBCCCSSSH
T ss_pred cCCCCcCCCCHhhcC--CCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCCCCCCccHH
Confidence 999999999999975 577 999999999999999999999999998 778999999999999999999999999
Q ss_pred HHHHHHHhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCC
Q 008170 161 GSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV 240 (575)
Q Consensus 161 GsaaaVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~ 240 (575)
|||||||+|++++|||||||||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..
T Consensus 168 GsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~vl~g~d~~ 247 (503)
T 1m22_A 168 GSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDA 247 (503)
T ss_dssp HHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999875432
Q ss_pred Cc---------------------ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchh-hccCcch
Q 008170 241 EP---------------------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYI-ASNVPSL 298 (575)
Q Consensus 241 ~~---------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v-~~~~p~l 298 (575)
++ ..+.|+.+..+.+. .++++.++++++++.|+..+. .+ +..+|.+
T Consensus 248 d~~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~~----~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~p~~ 315 (503)
T 1m22_A 248 DPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLL----KYRGMPPLIEQAATELRRAGA--------VVVPVELPNQ 315 (503)
T ss_dssp CGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGGG----GSTTHHHHHHHHHHHHHHTTC--------EEEEECCTTT
T ss_pred CccccccccccccchhhhccccCCCCCEEEEECcccc----CCHHHHHHHHHHHHHHHHcCC--------EEEEeCCCcH
Confidence 21 12345666655431 356788999999998863332 11 1122322
Q ss_pred HHhhhccCCCCCchhHHHHHHHHHHHHHhhhhhhhHHHHHH---------------------HcCCCCCHHHHHHHHHHh
Q 008170 299 KGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVK---------------------SAKPRLGYNVFERVLEAI 357 (575)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~---------------------~~~~~l~~~~~~~l~~~~ 357 (575)
.++... . ..+...|+...+..|+. .....+++.++.++..+.
T Consensus 316 ~~~~~~---------~--------~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (503)
T 1m22_A 316 GAWAEA---------E--------RTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATA 378 (503)
T ss_dssp TTTHHH---------H--------HHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCC
T ss_pred HHHHHH---------H--------HHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhhhcchhcccccCHHHHHHHHhcC
Confidence 111000 0 00111111111111111 113457788888888887
Q ss_pred cCCHHHHHHHHHHHHHHHHH--HHHHhCC--CCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCcccccc
Q 008170 358 NTTQDNIKILYKVRNEMRAA--LQRLLKD--DKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPI 433 (575)
Q Consensus 358 ~~s~~~~~~a~~~r~~~~~~--~~~~~~~--~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~ 433 (575)
.++..+|.++++.|+++++. ++++|++ +|+||+||+ .++|+++.... .+ ...||.++|++|+|+||||+
T Consensus 379 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~-~~a~~~~~~~~---~~---~~~~t~~~nl~G~PaisvP~ 451 (503)
T 1m22_A 379 GLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTT-GVAWPIRSEGD---DF---PGESYSAAAVAGYPSLTVPM 451 (503)
T ss_dssp CTTCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECC-CCCCBTTC------CC---TTCCHHHHHHHTCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCC-ccCcccccccC---cc---cccccccchhhCCCeEEecc
Confidence 78889999998888888765 9999974 999999999 56777652111 11 14689999999999999999
Q ss_pred cccCCCCcccccccccCCchhHHhHHHHHHHHhh
Q 008170 434 GKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQ 467 (575)
Q Consensus 434 G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~~~ 467 (575)
|+.+|||+||||+|++|+|..||+++.++|+...
T Consensus 452 g~~~GlPvGvqlvg~~~~d~~lL~~A~~~E~~~~ 485 (503)
T 1m22_A 452 GQIDGLPVGLLFMGTAWSEPKLIEMAYAYEQRTR 485 (503)
T ss_dssp EEETTEEEEEEEECSTTCHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCeEEEEECCCCChHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999998653
No 9
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=5.3e-87 Score=713.23 Aligned_cols=416 Identities=23% Similarity=0.259 Sum_probs=321.5
Q ss_pred hHH-HHHHHHhhcccccCCCCcCcEE-eeccCCCCCCCC----------------CCCCCCCCCCceEEeecccccCCcc
Q 008170 29 VVL-AETLRRRRNPKLNGRVDFGAFL-ERFELIPFPQPP----------------PPAARQPLAGLKFAIKDVFDVKGYV 90 (575)
Q Consensus 29 ~~~-~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~a~----------------~~~~~gpL~Gvpi~vKD~~~~~G~~ 90 (575)
++. +++++.++++++++++.+|+++ +..++++ .++. .+...||||||||+|||||+|+|++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~g~~~gpL~GvPi~vKD~i~v~G~~ 105 (521)
T 3a1k_A 27 RLEWPALIDGALGSYDVVDQLYADEATPPTTSRE-HAVPSASENPLSAWYVTTSIPPTSDGVLTGRRVAIKDNVTVAGVP 105 (521)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHSCCCCCCCC-EECCCTTTCTTSCEEEEEEECCSSCCTTTTCEEEEETTBCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccCchhh-hhccccccchhhhhHHHHhhcCCCCCCCCCCEEEEEcCcccCCcc
Confidence 555 6666666666666665555555 3332222 1110 1345699999999999999999999
Q ss_pred ccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcC
Q 008170 91 TGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQL 170 (575)
Q Consensus 91 tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~ 170 (575)
||+||+.|.+ .++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|+
T Consensus 106 Tt~Gs~~~~~--~~~~~DA~vV~rLr~AGAvilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGSAAAVAag~ 183 (521)
T 3a1k_A 106 MMNGSRTVEG--FTPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGD 183 (521)
T ss_dssp BCTTCTTTTT--BCCSSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCEETTEEEEECCSSSHHHHHHHHTTS
T ss_pred cCCCChhhcC--CCCCCchHHHHHHHHCCCEEEEeeChhhHhhCCCCCCCCCCCcCCCCCCCCCCCCCCchHHHHHhcCC
Confidence 9999999975 57889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCcc-------
Q 008170 171 VDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPR------- 243 (575)
Q Consensus 171 ~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~~------- 243 (575)
+++|||||||||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++.
T Consensus 184 ~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vlag~d~~D~~~~~~~~~ 263 (521)
T 3a1k_A 184 VDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQADSVEA 263 (521)
T ss_dssp SSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHHHHHHHHHHCSCCSSCTTSCTTCCC
T ss_pred cceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHHHHHHHHHHhCCCCCCccccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999875432211
Q ss_pred -----------cCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhh-ccCcchHHhhhccCCCCCc
Q 008170 244 -----------RARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSLKGLRAQSTSPENG 311 (575)
Q Consensus 244 -----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~-~~~p~l~~~~~~~~~~~~~ 311 (575)
.+.|+.++.+.+.. ...++++.++++++++.|+..+ +.|+ ..+|.+......
T Consensus 264 ~~~~~~l~~~~~~lrIgv~~~~~~~-~~~~~~v~~a~~~a~~~L~~~G--------a~v~ev~~p~~~~~~~~------- 327 (521)
T 3a1k_A 264 GDYLSTLDSDVDGLRIGIVREGFGH-AVSQPEVDDAVRAAAHSLTEIG--------CTVEEVNIPWHLHAFHI------- 327 (521)
T ss_dssp CCSSTTTTSCCTTCEEEEEGGGSCC-SSSCHHHHHHHHHHHHGGGGGT--------CEEEEECCTHHHHHHHH-------
T ss_pred cchhhhhccCccCcEEEEECccccc-cCCCHHHHHHHHHHHHHHHHCC--------CEEEEeCCCchHhHHHH-------
Confidence 22356665553311 1235789999999999886333 2222 223322211000
Q ss_pred hhHHHHHH--HHHHHHH-------------hhhhhhhHHHHHHHcCCCCCHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 008170 312 TATLKALS--SVMLSLQ-------------RYEFKTIYEEWVKSAKPRLGYNVFERVLEAI----NTTQDNIKILYKVRN 372 (575)
Q Consensus 312 ~~~~~~~~--~~~~~l~-------------~~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~----~~s~~~~~~a~~~r~ 372 (575)
+..+. .....+. ..++...+..+.......+++.++.++..+. .++..+|.++++.|+
T Consensus 328 ---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~a~~~r~ 404 (521)
T 3a1k_A 328 ---WNVIATDGGAYQMLDGNGYGMNAEGLYDPELMAHFASRRIQHADALSETVKLVALTGHHGITTLGGASYGKARNLVP 404 (521)
T ss_dssp ---HHHHHHHHHHHHTTTTTTTCSSSCSCCCHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhhhhhccccccchhhhhhHHHHHHHHHHhhhhhhhcCHHHHHHHHhchhhhccCCHHHHHHHHHHHH
Confidence 00000 0000110 0122223444555555678999998887663 356778999999999
Q ss_pred HHHHHHHHHhCCCCEEEecCCCCCCCcCCcccccchhhHh---hhhccccccccCCCCcccccccccCCCCccccccccc
Q 008170 373 EMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHD---RTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYH 449 (575)
Q Consensus 373 ~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~---~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~ 449 (575)
.+++.++++|+++|+||+||+|.+||++++.......+.. .++.||.++|++|+|+||||+|+.+|||+||||+|++
T Consensus 405 ~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~ 484 (521)
T 3a1k_A 405 LARAAYDTALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVNGLPVGMMITGRH 484 (521)
T ss_dssp HHHHHHHHHHHHCSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEEEEEETTEEEEEEEECST
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEeecccCCCCCeeEEEEcCC
Confidence 9999999999999999999999999999864322222221 2346799999999999999999999999999999999
Q ss_pred CCchhHHhHHHHHHHHh
Q 008170 450 GGDKFLLDTVLDLYDSL 466 (575)
Q Consensus 450 ~~d~~ll~~a~~~~~~~ 466 (575)
|+|..||+++.++|+..
T Consensus 485 ~~d~~LL~~A~~~E~~~ 501 (521)
T 3a1k_A 485 FDDATVLRVGRAFEKLR 501 (521)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999999843
No 10
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=2.1e-85 Score=702.77 Aligned_cols=443 Identities=16% Similarity=0.183 Sum_probs=332.5
Q ss_pred ecCCCCchhHHHHHHHhhch-----hHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCCCCCCCCCCCceEEeecc
Q 008170 9 KTNTSNPKVWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDV 83 (575)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~~~~~gpL~Gvpi~vKD~ 83 (575)
.+.+...+++..|+++|++. +|++|+++++++||.+.|+.+|||++.++++ .++++.....||||||||+||||
T Consensus 60 ~~~~~~~~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~a-~~~a~~~~~~gpL~GvPi~vKD~ 138 (573)
T 3ppm_A 60 NPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDC-ETQLSQAPRQGLLYGVPVSLKEC 138 (573)
T ss_dssp CTTCCHHHHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTH-HHHHHHCCTTCTTTTCEEEEETT
T ss_pred CCCCChhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHHH-HHHHHhhhhcCCcCCCeEEEEcc
Confidence 34455567777789998855 9999999999999999999999999987653 22222223359999999999999
Q ss_pred cccCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHH
Q 008170 84 FDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSA 163 (575)
Q Consensus 84 ~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsa 163 (575)
|+++|++||+||..|.+ .++.+||++|+||++||||++||||||||+++.+|.|+.||+|+||||++++|||||||||
T Consensus 139 ~~~~G~~tt~Gs~~~~~--~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsa 216 (573)
T 3ppm_A 139 FSYKGHDSTLGLSLNEG--MPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEG 216 (573)
T ss_dssp BCCBTCCCCTTCGGGTT--CCBSSCCHHHHHHHHTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTTBCCCSSSHHHH
T ss_pred cCCCCCCcCCcChhhcC--CCCCcchHHHHHHHHCCCEEEEecCCccccccCCCCCCCCCCcCCCCCCCCCCCCCCchHH
Confidence 99999999999999975 5788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCC----CccccccccCHHHHHHHHHHHccCC-
Q 008170 164 VAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQS----LDTVGLLARNASILHRVGHVLLQLN- 238 (575)
Q Consensus 164 aaVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~----~d~~G~~ar~~~d~~~v~~~~~~~~- 238 (575)
||||+|++++|+|||||||||+||+||||||||||+||||+.|++|.+++ +|++|||+||++|++.+++++.+.+
T Consensus 217 aaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~~l~~l~~~d~ 296 (573)
T 3ppm_A 217 ALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHL 296 (573)
T ss_dssp HHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHHHHHHHSSHHH
T ss_pred HHHHcCCCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999998775 8999999999999999998876432
Q ss_pred ----C-CC----------cccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhh
Q 008170 239 ----A-VE----------PRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRA 303 (575)
Q Consensus 239 ----~-~~----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~ 303 (575)
. .. ...+.++++..+.. ...+++++.++++++++.|+..+. +.++..+|.+.+...
T Consensus 297 ~~~d~~~~~~~~~~~~~~~~~~lrigv~~~~~--~~~~~p~v~~a~~~a~~~L~~~G~-------~v~~~~~p~~~~~~~ 367 (573)
T 3ppm_A 297 FTLDPTVPPLPFREEVYRSSRPLRVGYYETDN--YTMPSPAMRRALIETKQRLEAAGH-------TLIPFLPNNIPYALE 367 (573)
T ss_dssp HHHCTTSCCCCCCHHHHTCCCCCEEEECSCCS--SSCCCHHHHHHHHHHHHHHHHTTC-------EEEECCCTTHHHHHH
T ss_pred cccCCCCCccccchhhcccCCCCEEEEEcccC--CCCCCHHHHHHHHHHHHHHHHCCC-------EEEEecCccHHHHHH
Confidence 0 00 12344566654432 223468899999999999863332 011122333221110
Q ss_pred cc----CCCCCchhHHHHHHH-----HHH-HHHhhhhhhhHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008170 304 QS----TSPENGTATLKALSS-----VML-SLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNE 373 (575)
Q Consensus 304 ~~----~~~~~~~~~~~~~~~-----~~~-~l~~~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~ 373 (575)
.. ...+........+.. ... ..............+......+.|.+...+..+...+..++++++..|..
T Consensus 368 ~~~~~~~~~dg~~~~~~~~~~e~~~p~~~~~~~~~~lp~~l~~~~~~~~~~~~p~~~~~~~~~~~~s~~e~~~~~~~r~~ 447 (573)
T 3ppm_A 368 VLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEM 447 (573)
T ss_dssp THHHHHHTTBTTHHHHGGGTTSCCCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHHHHHHHTSBCBHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHhccCcccHHHHHHhhhccchHHHHHHHHHHhhhcchHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 00 000000000000000 000 00000000001111111112345555556666677889999999999999
Q ss_pred HHHHHHHHhC--CCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCccccccccc---------------
Q 008170 374 MRAALQRLLK--DDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY--------------- 436 (575)
Q Consensus 374 ~~~~~~~~~~--~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~--------------- 436 (575)
+++.+.+.|. ++|+||+|+ +.+|++|+.... ...+..||.+||++|+|+++||+|+.
T Consensus 448 ~r~~~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~~-----~~~~~~YT~l~NLLDyPA~vVPvg~v~~~~d~~~~~~~~~~ 521 (573)
T 3ppm_A 448 YRQSVIAQWKAMNLDVLLTPM-LGPALDLNTPGR-----ATGAVSYTMLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYF 521 (573)
T ss_dssp HHHHHHHHHHHTTCSEEEEEC-CCSCCBTTCGGG-----CGGGGHHHHHHHHTTCCEEEEEEEECCHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHhhcCCCEeeCCC-CCCCcCCccccc-----cccccchhhhhHhhCCCeEEEeccccccccccccccccccc
Confidence 9999999995 599999999 558888874211 11235789999999999999999953
Q ss_pred ---------------CCCCcccccccccCCchhHHhHHHHHHHHhhhh
Q 008170 437 ---------------NEHPISISFITYHGGDKFLLDTVLDLYDSLQEQ 469 (575)
Q Consensus 437 ---------------~GlPvGlqivg~~~~d~~ll~~a~~~~~~~~~~ 469 (575)
+|+|+||||||++++|+.||+++..+|+.+...
T Consensus 522 ~~~~d~~~~~~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~l~~~ 569 (573)
T 3ppm_A 522 GDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQ 569 (573)
T ss_dssp CSHHHHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHCTT
T ss_pred chhhhhhhhhhhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcc
Confidence 699999999999999999999999999987654
No 11
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.53 E-value=6.3e-14 Score=121.02 Aligned_cols=92 Identities=33% Similarity=0.374 Sum_probs=85.5
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HH
Q 008170 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---AR 559 (575)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~ 559 (575)
.-+|+.++.++++|+.++++|+|++|++.|+++|+++|+++.+|+++|.+|.++|++++|+.+|+++++++|++. ..
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 457999999999999999999999999999999999999999999999999999999999999999999999988 46
Q ss_pred HHHHHHHHHHhhhhh
Q 008170 560 VGYVDCSMLIYLLCI 574 (575)
Q Consensus 560 ~~~~~~~l~~~~~~i 574 (575)
+|.++..+++|..|+
T Consensus 87 lg~~~~~~~~~~~A~ 101 (126)
T 4gco_A 87 KAACLVAMREWSKAQ 101 (126)
T ss_dssp HHHHHHHTTCHHHHH
T ss_pred HHHHHHHCCCHHHHH
Confidence 777777788887775
No 12
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.43 E-value=3.6e-13 Score=116.35 Aligned_cols=90 Identities=32% Similarity=0.471 Sum_probs=79.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-------
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR------- 557 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~------- 557 (575)
.++.+..++++|+.++++|+|++|+.+|++||+++|+++.+|+|+|.+|.++|+|++|+.+|+++++++|++.
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 3577889999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred ---HHHHHHHHHHHHhhhhh
Q 008170 558 ---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 558 ---~~~~~~~~~l~~~~~~i 574 (575)
..+|.++..+++|..||
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~ 103 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAV 103 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHH
Confidence 24555666666666654
No 13
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.35 E-value=3.8e-12 Score=113.39 Aligned_cols=92 Identities=15% Similarity=0.053 Sum_probs=85.4
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HH
Q 008170 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---AR 559 (575)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~ 559 (575)
..+|++...++++|..++++|+|++|+..|+++++++|+++.+|+++|.+|.++|+|++|+..|+++++++|+++ ..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 356899999999999999999999999999999999999999999999999999999999999999999999987 56
Q ss_pred HHHHHHHHHHhhhhh
Q 008170 560 VGYVDCSMLIYLLCI 574 (575)
Q Consensus 560 ~~~~~~~l~~~~~~i 574 (575)
+|.++..+|++..|+
T Consensus 110 lg~~~~~lg~~~eA~ 124 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAK 124 (151)
T ss_dssp HHHHHHHTTCHHHHH
T ss_pred HHHHHHHcCCHHHHH
Confidence 777888888887775
No 14
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.32 E-value=6.2e-12 Score=111.49 Aligned_cols=88 Identities=11% Similarity=0.075 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT-------SAT-----YYSNRAAAYLELGCFQQAEEDCSKTISL-- 552 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-------~~~-----~~~~ra~~~~~l~~~~~Ai~~~~~al~l-- 552 (575)
..+..++++|+.+++.|+|++|+.+|++||+++|+ +.. +|+|+|.++.++|+|++|+.+|+++|++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 46888999999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred -----CcccHHHH-------HHHHHHHHHhhhhh
Q 008170 553 -----DKKVRARV-------GYVDCSMLIYLLCI 574 (575)
Q Consensus 553 -----~P~~~~~~-------~~~~~~l~~~~~~i 574 (575)
+|++...+ |.++..+++|..||
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl 122 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAM 122 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHH
Confidence 99987555 56666667777665
No 15
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.30 E-value=1.5e-11 Score=105.25 Aligned_cols=89 Identities=31% Similarity=0.406 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
|..+..|+++|+.+++.|+|++|+..|+++++++|+++.+|+++|.++.++|++++|+.+|+++++++|++. ..+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 356888999999999999999999999999999999999999999999999999999999999999999887 45667
Q ss_pred HHHHHHHhhhhh
Q 008170 563 VDCSMLIYLLCI 574 (575)
Q Consensus 563 ~~~~l~~~~~~i 574 (575)
++..+++|..|+
T Consensus 81 ~~~~~~~~~~A~ 92 (126)
T 3upv_A 81 AQIAVKEYASAL 92 (126)
T ss_dssp HHHHTTCHHHHH
T ss_pred HHHHHhCHHHHH
Confidence 777777777664
No 16
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.24 E-value=5.4e-11 Score=107.06 Aligned_cols=93 Identities=32% Similarity=0.468 Sum_probs=82.1
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---H
Q 008170 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---A 558 (575)
Q Consensus 482 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~ 558 (575)
..+++.++..|+.+|+.+++.|+|++|+..|+++++++|+++.+|+++|.+|+++++|++|+.+|+++++++|++. .
T Consensus 4 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (164)
T 3sz7_A 4 SMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83 (164)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3456788999999999999999999999999999999999999999999999999999999999999999999987 4
Q ss_pred HHHHHHHHHHHhhhhh
Q 008170 559 RVGYVDCSMLIYLLCI 574 (575)
Q Consensus 559 ~~~~~~~~l~~~~~~i 574 (575)
.++.++..+++|..|+
T Consensus 84 ~lg~~~~~~g~~~~A~ 99 (164)
T 3sz7_A 84 RLGLARFDMADYKGAK 99 (164)
T ss_dssp HHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHccCHHHHH
Confidence 5677777777777665
No 17
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.23 E-value=2.5e-11 Score=109.08 Aligned_cols=90 Identities=22% Similarity=0.371 Sum_probs=62.1
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------------------NGTSATYYSNRAAAYLELGCFQQAEEDC 546 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~------------------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~ 546 (575)
..+.+..++++|+.+++.|+|++|+..|++++++ +|.+..+|+|+|.||+++|+|++|+.+|
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3456677777777777777777777777777777 5666677777777777777777777777
Q ss_pred HHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170 547 SKTISLDKKVR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 547 ~~al~l~P~~~---~~~~~~~~~l~~~~~~i 574 (575)
+++|+++|++. ..+|.++..+|+|..|+
T Consensus 87 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~ 117 (162)
T 3rkv_A 87 SEVLKREETNEKALFRRAKARIAAWKLDEAE 117 (162)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcHHHHH
Confidence 77777777766 34555555566665554
No 18
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.22 E-value=6.8e-11 Score=101.76 Aligned_cols=78 Identities=14% Similarity=0.205 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYV 563 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~ 563 (575)
|..+..|.++|.++++.|+|++|+..|+++|+++|++..+|+++|.++..+|++++|+.+|+++++++|++...+-.+
T Consensus 44 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 44 PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 566889999999999999999999999999999999999999999999999999999999999999999998654433
No 19
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.19 E-value=6.3e-11 Score=105.29 Aligned_cols=88 Identities=11% Similarity=0.035 Sum_probs=78.8
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVG 561 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~ 561 (575)
+|+....++..|..|++.|+|++|++.|+++++++|+++.+|+++|.+|.++|++++|+..|+++++++|++.. .++
T Consensus 27 ~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 106 (150)
T 4ga2_A 27 PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIA 106 (150)
T ss_dssp HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 47788899999999999999999999999999999999999999999999999999999999999999999884 455
Q ss_pred HHHHHHHHhhh
Q 008170 562 YVDCSMLIYLL 572 (575)
Q Consensus 562 ~~~~~l~~~~~ 572 (575)
.++..++++..
T Consensus 107 ~~~~~~~~~~~ 117 (150)
T 4ga2_A 107 ELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHCSSSS
T ss_pred HHHHHcCChHH
Confidence 56666666543
No 20
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.19 E-value=1e-10 Score=103.71 Aligned_cols=90 Identities=12% Similarity=0.042 Sum_probs=76.7
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG 561 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~ 561 (575)
+|++...++++|..++++|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+++ ..+|
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 96 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 4788888899999999999999999999999999999999999999999999999999999999999998876 4566
Q ss_pred HHHHHHHHhhhhh
Q 008170 562 YVDCSMLIYLLCI 574 (575)
Q Consensus 562 ~~~~~l~~~~~~i 574 (575)
.++..+|++..|+
T Consensus 97 ~~~~~~g~~~~A~ 109 (148)
T 2vgx_A 97 ECLLQXGELAEAE 109 (148)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHHHcCCHHHHH
Confidence 6677777776654
No 21
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.19 E-value=1.4e-10 Score=96.33 Aligned_cols=87 Identities=25% Similarity=0.363 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------H---H
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV------R---A 558 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~------~---~ 558 (575)
.+..+.++|..+++.|+|++|+..|+++++++|+++.+++++|.++.++|++++|+.+|+++++++|++ . .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 577899999999999999999999999999999999999999999999999999999999999999997 3 4
Q ss_pred HHHHHHHHHHHhhhhh
Q 008170 559 RVGYVDCSMLIYLLCI 574 (575)
Q Consensus 559 ~~~~~~~~l~~~~~~i 574 (575)
.++.++..++++..++
T Consensus 83 ~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHhHhhhH
Confidence 5666667777666554
No 22
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.17 E-value=1.7e-10 Score=101.24 Aligned_cols=91 Identities=19% Similarity=0.162 Sum_probs=78.5
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHH
Q 008170 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARV 560 (575)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~ 560 (575)
.+|+....++++|..+++.|+|++|+..|+++++++|+++.+|+++|.++.++|++++|+..|+++++++|+++ ..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 45788888999999999999999999999999999999999999999999999999999999999999999877 456
Q ss_pred HHHHHHHHHhhhhh
Q 008170 561 GYVDCSMLIYLLCI 574 (575)
Q Consensus 561 ~~~~~~l~~~~~~i 574 (575)
|.++..+|+|..|+
T Consensus 93 g~~~~~~g~~~~A~ 106 (142)
T 2xcb_A 93 AECHLQLGDLDGAE 106 (142)
T ss_dssp HHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHH
Confidence 77777777776664
No 23
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.13 E-value=5e-10 Score=95.47 Aligned_cols=85 Identities=13% Similarity=-0.049 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHH
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCS 566 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~ 566 (575)
..++++|..+++.|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++. ..++.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999988 467777788
Q ss_pred HHHhhhhh
Q 008170 567 MLIYLLCI 574 (575)
Q Consensus 567 l~~~~~~i 574 (575)
+|++..|+
T Consensus 98 ~g~~~~A~ 105 (121)
T 1hxi_A 98 EHNANAAL 105 (121)
T ss_dssp HHHHHHHH
T ss_pred cCCHHHHH
Confidence 88887765
No 24
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.08 E-value=5.6e-10 Score=96.45 Aligned_cols=89 Identities=34% Similarity=0.492 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
+..+..++..|..+++.|+|++|+..|+++++++|+++.+++++|.++..++++++|+.+++++++++|++. ..++.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 456888999999999999999999999999999999999999999999999999999999999999999887 45666
Q ss_pred HHHHHHHhhhhh
Q 008170 563 VDCSMLIYLLCI 574 (575)
Q Consensus 563 ~~~~l~~~~~~i 574 (575)
++..+++|..|+
T Consensus 86 ~~~~~~~~~~A~ 97 (137)
T 3q49_B 86 CQLEMESYDEAI 97 (137)
T ss_dssp HHHHTTCHHHHH
T ss_pred HHHHHhhHHHHH
Confidence 777777777664
No 25
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.06 E-value=7.2e-10 Score=98.56 Aligned_cols=72 Identities=15% Similarity=0.103 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
|.++..|.++|.++++.|+|++|+.+|+++++++|+++.+|+++|.||.++|++++|+..|+++++++|+..
T Consensus 67 P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 67 FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 667889999999999999999999999999999999999999999999999999999999999999999876
No 26
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.05 E-value=4.3e-10 Score=99.60 Aligned_cols=72 Identities=15% Similarity=0.095 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-------NGTSATYY----SNRAAAYLELGCFQQAEEDCSKTISLDK 554 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-------~p~~~~~~----~~ra~~~~~l~~~~~Ai~~~~~al~l~P 554 (575)
+.++..|.++|.++.+.|+|++|+.+|+++|++ +|+++.+| +|+|.++..+|++++|+.+|+++++++|
T Consensus 54 ~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 54 GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 446779999999999999999999999999999 99999999 9999999999999999999999999999
Q ss_pred ccH
Q 008170 555 KVR 557 (575)
Q Consensus 555 ~~~ 557 (575)
++.
T Consensus 134 ~d~ 136 (159)
T 2hr2_A 134 ERK 136 (159)
T ss_dssp HCC
T ss_pred CcH
Confidence 876
No 27
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.03 E-value=6.6e-10 Score=123.78 Aligned_cols=89 Identities=17% Similarity=0.133 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
|+.+..|.++|+.+.++|+|++|++.|+++|+++|+++.+|+|+|.+|.++|++++|++.|+++++++|++. ..+|.
T Consensus 40 P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~ 119 (723)
T 4gyw_A 40 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLAS 119 (723)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 444556666666666666666666666666666666666666666666666666666666666666666655 34455
Q ss_pred HHHHHHHhhhhh
Q 008170 563 VDCSMLIYLLCI 574 (575)
Q Consensus 563 ~~~~l~~~~~~i 574 (575)
++..+|+|..|+
T Consensus 120 ~~~~~g~~~eAi 131 (723)
T 4gyw_A 120 IHKDSGNIPEAI 131 (723)
T ss_dssp HHHHTTCHHHHH
T ss_pred HHHHcCCHHHHH
Confidence 555555555554
No 28
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.01 E-value=1.1e-09 Score=89.79 Aligned_cols=73 Identities=11% Similarity=0.120 Sum_probs=67.9
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
+|+....++++|..+++.|+|++|+..|+++++++|+++.+|+++|.+|.++|++++|+..+++++++.|++.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence 4677899999999999999999999999999999999999999999999999999999999999999987543
No 29
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.01 E-value=5.1e-09 Score=83.22 Aligned_cols=79 Identities=25% Similarity=0.400 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVD 564 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~ 564 (575)
+..+..+.+.|..+++.|+|++|+..|+++++++|++..+++++|.++.+++++++|+..++++++++|++...+..++
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999999999999999999999999886444443
No 30
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.00 E-value=2.3e-09 Score=87.20 Aligned_cols=82 Identities=17% Similarity=0.116 Sum_probs=73.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH--HHHHHHHH
Q 008170 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT-YYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARV--GYVDCSML 568 (575)
Q Consensus 492 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~-~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~--~~~~~~l~ 568 (575)
.+++|..+++.|+|++|+..|+++++.+|+++. +++++|.+|.++|++++|+..|+++++++|++...+ +.+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~ 82 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILN 82 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999 999999999999999999999999999999998765 66666666
Q ss_pred Hhhhh
Q 008170 569 IYLLC 573 (575)
Q Consensus 569 ~~~~~ 573 (575)
.|..+
T Consensus 83 ~~~~~ 87 (99)
T 2kc7_A 83 FYNKD 87 (99)
T ss_dssp HHCCT
T ss_pred HHHHH
Confidence 66554
No 31
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.00 E-value=2e-09 Score=91.88 Aligned_cols=73 Identities=40% Similarity=0.572 Sum_probs=37.6
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
.+.....++++|..+++.|+|++|+..|+++++.+|++..+++++|.++..++++++|+..++++++++|++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 84 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI 84 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch
Confidence 3444555555555555555555555555555555555555555555555555555555555555555555443
No 32
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.98 E-value=2.5e-09 Score=94.55 Aligned_cols=74 Identities=14% Similarity=0.150 Sum_probs=68.8
Q ss_pred ChhHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQW----------NKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-----------CFQQAE 543 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~----------~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~-----------~~~~Ai 543 (575)
+|++++.|.+.|+++.+.+++ ++|+.+|++||+++|++..+|+++|.+|.+++ ++++|+
T Consensus 32 ~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~ 111 (158)
T 1zu2_A 32 NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT 111 (158)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHH
Confidence 367899999999999998875 59999999999999999999999999999985 899999
Q ss_pred HHHHHHHHhCcccHH
Q 008170 544 EDCSKTISLDKKVRA 558 (575)
Q Consensus 544 ~~~~~al~l~P~~~~ 558 (575)
.+|++|++++|++..
T Consensus 112 ~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 112 QFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhCCCCHH
Confidence 999999999999873
No 33
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.96 E-value=5.9e-09 Score=93.27 Aligned_cols=73 Identities=18% Similarity=0.090 Sum_probs=70.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
++.....|.++|.++++.|+|++|+..|+++|+++|+++.+|+++|.+|..+|++++|+.+|+++++++|++.
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 4667889999999999999999999999999999999999999999999999999999999999999999987
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.96 E-value=3.2e-09 Score=100.29 Aligned_cols=89 Identities=13% Similarity=0.086 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
|.++..+.++|..+++.|++++|+..|+++++++|+++.+++++|.++.++|++++|+..++++++++|++. ..++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 455678999999999999999999999999999999999999999999999999999999999999999987 46677
Q ss_pred HHHHH-----------HHhhhhh
Q 008170 563 VDCSM-----------LIYLLCI 574 (575)
Q Consensus 563 ~~~~l-----------~~~~~~i 574 (575)
++..+ |++..|+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~ 104 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQAL 104 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHH
Confidence 77777 8877765
No 35
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.94 E-value=7.7e-09 Score=96.95 Aligned_cols=66 Identities=18% Similarity=0.129 Sum_probs=63.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Q 008170 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARV 560 (575)
Q Consensus 495 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~ 560 (575)
+|..+++.|+|++|+..|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|++...+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~ 125 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAAN 125 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998433
No 36
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.93 E-value=6.5e-09 Score=88.58 Aligned_cols=79 Identities=15% Similarity=0.103 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cccHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD------KKVRAR 559 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~------P~~~~~ 559 (575)
|+....|.++|..+++.|+|++|+..|+++++++|++..+|+++|.++..+|++++|+.+++++++++ |++...
T Consensus 35 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~ 114 (126)
T 3upv_A 35 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114 (126)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHH
Confidence 45578999999999999999999999999999999999999999999999999999999999999999 776654
Q ss_pred HHHHH
Q 008170 560 VGYVD 564 (575)
Q Consensus 560 ~~~~~ 564 (575)
+..+.
T Consensus 115 ~~~l~ 119 (126)
T 3upv_A 115 DQLYY 119 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 37
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.92 E-value=3.4e-09 Score=112.16 Aligned_cols=83 Identities=16% Similarity=0.182 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDC 565 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~ 565 (575)
...|.++|.++++.|+|++|+..|+++|+++|+++.+|+++|.+|+++++|++|+.+|+++++++|++. ..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555555555555555555555555544 33444444
Q ss_pred HHHHhh
Q 008170 566 SMLIYL 571 (575)
Q Consensus 566 ~l~~~~ 571 (575)
.++++.
T Consensus 397 ~~~~~~ 402 (457)
T 1kt0_A 397 KAKEHN 402 (457)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 38
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.92 E-value=4.4e-09 Score=106.61 Aligned_cols=85 Identities=16% Similarity=0.170 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDC 565 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~ 565 (575)
...|.++|.++++.|+|++|+..|+++++++|+++.+|+++|.+|..++++++|+.+|+++++++|++. ..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 577888888888888888888888888888888888888888888888888888888888888888776 35566666
Q ss_pred HHHHhhhh
Q 008170 566 SMLIYLLC 573 (575)
Q Consensus 566 ~l~~~~~~ 573 (575)
.++++..+
T Consensus 276 ~~~~~~~a 283 (336)
T 1p5q_A 276 RIRRQLAR 283 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
No 39
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=6.8e-09 Score=90.44 Aligned_cols=70 Identities=26% Similarity=0.327 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
...+.+.|..+++.|+|++|+..|+++++++|++..+++++|.++..++++++|+..++++++++|++..
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 134 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKV 134 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 5556666666666666666666666666666666666666666666666666666666666666666553
No 40
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.92 E-value=2.9e-09 Score=104.97 Aligned_cols=88 Identities=34% Similarity=0.505 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYV 563 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~ 563 (575)
..+..++++|+.++++|+|++|+..|+++++++|+++.+|+++|.+|.++|++++|+.+++++++++|++. ..+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999887 456666
Q ss_pred HHHHHHhhhhh
Q 008170 564 DCSMLIYLLCI 574 (575)
Q Consensus 564 ~~~l~~~~~~i 574 (575)
+..+|+|..|+
T Consensus 82 ~~~~g~~~~A~ 92 (281)
T 2c2l_A 82 QLEMESYDEAI 92 (281)
T ss_dssp HHHTTCHHHHH
T ss_pred HHHcCCHHHHH
Confidence 66677776664
No 41
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.92 E-value=7.7e-09 Score=87.16 Aligned_cols=74 Identities=18% Similarity=0.092 Sum_probs=71.5
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
+|.....+.++|..+++.|+|++|+..|+++++++|+++.+++++|.++.++|++++|+..++++++++|++..
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999998874
No 42
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.91 E-value=3e-09 Score=118.42 Aligned_cols=90 Identities=17% Similarity=0.096 Sum_probs=71.6
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVG 561 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~ 561 (575)
+|+.+..|.++|+.+.++|++++|++.|+++++++|+++.+|+|+|.+|.++|++++|++.|+++++++|++.. .++
T Consensus 73 ~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~ 152 (723)
T 4gyw_A 73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152 (723)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhh
Confidence 46677788888888888888888888888888888888888888888888888888888888888888888773 455
Q ss_pred HHHHHHHHhhhhh
Q 008170 562 YVDCSMLIYLLCI 574 (575)
Q Consensus 562 ~~~~~l~~~~~~i 574 (575)
.++..+++|..|+
T Consensus 153 ~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 153 HCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHHTTCCTTHH
T ss_pred hHHHhcccHHHHH
Confidence 5666666665553
No 43
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.91 E-value=8.7e-09 Score=85.59 Aligned_cols=69 Identities=43% Similarity=0.550 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
+..+...|..++..|+|++|+..|+++++.+|++..+++++|.++..++++++|+..++++++++|++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 72 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG 72 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH
Confidence 444555555555555555555555555555555555555555555555555555555555555555544
No 44
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.90 E-value=7.9e-09 Score=95.79 Aligned_cols=82 Identities=16% Similarity=0.125 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHHHHHH
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVGYVDCS 566 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~~~~~~ 566 (575)
..+.++|.++++.|+|++|+..|+++++++|++..+++++|.+|..++++++|+..|+++++++|++.. .++.+...
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 566777777777777777777777777777777777777777777777777777777777777777663 34444444
Q ss_pred HHHhh
Q 008170 567 MLIYL 571 (575)
Q Consensus 567 l~~~~ 571 (575)
++++.
T Consensus 169 ~~~~~ 173 (198)
T 2fbn_A 169 LKEAR 173 (198)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 45
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.90 E-value=1.2e-08 Score=86.40 Aligned_cols=69 Identities=19% Similarity=0.139 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
...+...|..++..|++++|+..|.++++++|++..+++++|.++.+++++++|+..++++++++|++.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 114 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccch
Confidence 444444555555555555555555555555555555555555555555555555555555555555443
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.90 E-value=3e-09 Score=109.63 Aligned_cols=90 Identities=11% Similarity=0.005 Sum_probs=75.0
Q ss_pred ChhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHH
Q 008170 485 SIDASELLKEKGNAAFKGKQ-WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARV 560 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~-~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~ 560 (575)
+|++...|.++|..+.+.|+ |++|+..|+++|+++|+++.+|++||.++.++|++++|+.+|+++|+++|++. ..+
T Consensus 127 ~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~l 206 (382)
T 2h6f_A 127 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 206 (382)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHH
Confidence 35678888889999998886 99999999999999999999999999999999999999999999999998887 456
Q ss_pred HHHHHHHHHhhhhh
Q 008170 561 GYVDCSMLIYLLCI 574 (575)
Q Consensus 561 ~~~~~~l~~~~~~i 574 (575)
|.++..+|+|..||
T Consensus 207 g~~~~~~g~~~eAl 220 (382)
T 2h6f_A 207 QWVIQEFKLWDNEL 220 (382)
T ss_dssp HHHHHHHTCCTTHH
T ss_pred HHHHHHcCChHHHH
Confidence 66666677776654
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.90 E-value=3.9e-09 Score=99.69 Aligned_cols=89 Identities=16% Similarity=0.021 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCc
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL-----------GCFQQAEEDCSKTISLDK 554 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l-----------~~~~~Ai~~~~~al~l~P 554 (575)
|+....+.++|..+++.|++++|+..|+++++++|+++.+++++|.++.++ |++++|+..++++++++|
T Consensus 36 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 115 (217)
T 2pl2_A 36 PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP 115 (217)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc
Confidence 556777888888888888888888888888888888888888888888888 888888888888888888
Q ss_pred ccH---HHHHHHHHHHHHhhhhh
Q 008170 555 KVR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 555 ~~~---~~~~~~~~~l~~~~~~i 574 (575)
++. ..+|.++..+|++..|+
T Consensus 116 ~~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 116 RYAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHcCChHHHH
Confidence 776 35566666666666554
No 48
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.90 E-value=1.7e-09 Score=89.13 Aligned_cols=89 Identities=11% Similarity=0.149 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHH---HH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK--VRA---RV 560 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~--~~~---~~ 560 (575)
|.....+..+|..+++.|+|++|+..|+++++++|++..+++++|.++.+++++++|+..++++++++|+ +.. .+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 3446678889999999999999999999999999999999999999999999999999999999999998 773 45
Q ss_pred HHHHHHH-HHhhhhh
Q 008170 561 GYVDCSM-LIYLLCI 574 (575)
Q Consensus 561 ~~~~~~l-~~~~~~i 574 (575)
+.++..+ +++..|+
T Consensus 83 ~~~~~~~~~~~~~A~ 97 (112)
T 2kck_A 83 ADALRYIEGKEVEAE 97 (112)
T ss_dssp HHHHTTCSSCSHHHH
T ss_pred HHHHHHHhCCHHHHH
Confidence 5555555 5555543
No 49
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.89 E-value=6.6e-09 Score=93.17 Aligned_cols=73 Identities=16% Similarity=0.120 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
|+....|.++|.++++.|+|++|+..|+++++++|++..+|+++|.+|.++|++++|+.+|+++++++|++..
T Consensus 42 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 42 PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 4568899999999999999999999999999999999999999999999999999999999999999998864
No 50
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.88 E-value=6.8e-09 Score=91.95 Aligned_cols=74 Identities=15% Similarity=0.025 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCcccHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED-CSKTISLDKKVRAR 559 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~-~~~al~l~P~~~~~ 559 (575)
|++...|..+|.++++.|++++|+..|+++++++|+++.+++++|.+|.+++++++|+.. ++++++++|+++..
T Consensus 62 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~ 136 (150)
T 4ga2_A 62 ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV 136 (150)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence 567899999999999999999999999999999999999999999999999999888776 59999999999853
No 51
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.88 E-value=8.4e-09 Score=91.17 Aligned_cols=72 Identities=17% Similarity=0.108 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
|.+...|.++|.++++.|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++
T Consensus 52 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 52 HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 566889999999999999999999999999999999999999999999999999999999999999988765
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.88 E-value=8e-09 Score=94.18 Aligned_cols=86 Identities=14% Similarity=0.222 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVGYV 563 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~~~ 563 (575)
+.+..|.++|+.++++|+|++|+..|+++++++|+++.+++++|.+|.++|++++|+..++++++.+|++.. .++.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 346778888888888888999998899888888888888888888888888888888888888888887763 33444
Q ss_pred HHHHHHhhh
Q 008170 564 DCSMLIYLL 572 (575)
Q Consensus 564 ~~~l~~~~~ 572 (575)
....+++..
T Consensus 83 ~~~~~~~~~ 91 (184)
T 3vtx_A 83 NFMIDEKQA 91 (184)
T ss_dssp HHHTTCHHH
T ss_pred HHHcCCHHH
Confidence 444444433
No 53
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.88 E-value=9.8e-09 Score=89.79 Aligned_cols=72 Identities=15% Similarity=0.116 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
|.+...|..+|..+++.|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++
T Consensus 49 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 49 HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 566889999999999999999999999999999999999999999999999999999999999999999765
No 54
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.88 E-value=5.1e-09 Score=98.19 Aligned_cols=87 Identities=17% Similarity=0.103 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSN----------------RAAAYLELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~----------------ra~~~~~l~~~~~Ai~~~~~al~ 551 (575)
.+..+..+|..+++.|+|++|+..|+++++++|+++.+|++ +|.+|.++|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCcccH---HHHHHHHHHHHHhhhhh
Q 008170 552 LDKKVR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 552 l~P~~~---~~~~~~~~~l~~~~~~i 574 (575)
++|++. ..+|.++..+|+|..|+
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~ 108 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDAL 108 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999988 56778888888888775
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.86 E-value=6.5e-09 Score=94.80 Aligned_cols=72 Identities=17% Similarity=0.133 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
|.....+..+|..+++.|+|++|++.|+++++++|+++.+|+++|.+|.++|++++|+.+|+++|+++|++.
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 104 TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 455778999999999999999999999999999999999999999999999999999999999999999865
No 56
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.86 E-value=1e-08 Score=91.18 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH-----H
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRAR-----V 560 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~-----~ 560 (575)
|.....+.+.|..+++.|+|++|+..|.++++++|++..+++++|.++.++|++++|+..++++++++|++... .
T Consensus 44 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 123 (166)
T 1a17_A 44 PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123 (166)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44566777788888888888888888888888888888888888888888888888888888888888776632 2
Q ss_pred HHHHHHHHHhhhhh
Q 008170 561 GYVDCSMLIYLLCI 574 (575)
Q Consensus 561 ~~~~~~l~~~~~~i 574 (575)
+......++|..|+
T Consensus 124 ~~~~~~~~~~~~A~ 137 (166)
T 1a17_A 124 CNKIVKQKAFERAI 137 (166)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 22244556666654
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.85 E-value=1e-08 Score=105.75 Aligned_cols=91 Identities=12% Similarity=-0.019 Sum_probs=84.0
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcccH---HH
Q 008170 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-FQQAEEDCSKTISLDKKVR---AR 559 (575)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~-~~~Ai~~~~~al~l~P~~~---~~ 559 (575)
.+|+....|..+|..+.+.|+|++|+..|+++|+++|++..+|++||.++.++|+ +++|+.+|+++++++|++. ..
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~ 171 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 171 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 4688999999999999999999999999999999999999999999999999997 9999999999999999988 46
Q ss_pred HHHHHHHHHHhhhhh
Q 008170 560 VGYVDCSMLIYLLCI 574 (575)
Q Consensus 560 ~~~~~~~l~~~~~~i 574 (575)
+|.++..+++|..||
T Consensus 172 ~g~~~~~~g~~~eAl 186 (382)
T 2h6f_A 172 RRVLVEWLRDPSQEL 186 (382)
T ss_dssp HHHHHHHHTCCTTHH
T ss_pred HHHHHHHccCHHHHH
Confidence 777777778777665
No 58
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.85 E-value=5.1e-09 Score=89.16 Aligned_cols=72 Identities=10% Similarity=-0.046 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
|+....|..+|..+.+.|++++|+..|+++++++|++..+++++|.++.++|++++|+..++++++++|++.
T Consensus 48 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 48 PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 567899999999999999999999999999999999999999999999999999999999999999999864
No 59
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.83 E-value=1.7e-08 Score=85.49 Aligned_cols=88 Identities=33% Similarity=0.478 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------H--
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV-------R-- 557 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~-------~-- 557 (575)
+.+..+...|..+++.|+|++|+..|.++++.+|+++.+++++|.++..++++++|+..++++++++|++ .
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999999999998876 4
Q ss_pred -HHHHHHHHHHHHhhhhh
Q 008170 558 -ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 558 -~~~~~~~~~l~~~~~~i 574 (575)
..++.++..+++|..|+
T Consensus 82 ~~~la~~~~~~~~~~~A~ 99 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAI 99 (131)
T ss_dssp HHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhccHHHHH
Confidence 45666666677776654
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.82 E-value=1.3e-08 Score=96.32 Aligned_cols=84 Identities=19% Similarity=0.169 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHH
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG-TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDC 565 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~ 565 (575)
..++++|..+++.|+|++|+..|+++++++| .+..+++++|.++.++|++++|+.+++++++++|++. ..+|.++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 5555666666666666666666666666665 5555556666666666666666666666666666544 34444444
Q ss_pred HHHHhhhh
Q 008170 566 SMLIYLLC 573 (575)
Q Consensus 566 ~l~~~~~~ 573 (575)
.+++|..|
T Consensus 88 ~~~~~~~A 95 (228)
T 4i17_A 88 DMKNNQEY 95 (228)
T ss_dssp HTTCHHHH
T ss_pred HcccHHHH
Confidence 45555444
No 61
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.82 E-value=2.7e-08 Score=100.70 Aligned_cols=70 Identities=9% Similarity=0.056 Sum_probs=63.2
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCc
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQA-EEDCSKTISLDK 554 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~A-i~~~~~al~l~P 554 (575)
+|+....|+++|..+++.|+|++|+..|+++++++|++..++.+++.++.+++++++| ...|+++++.-+
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999999999999999999999999999999999999999999999 557777776533
No 62
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.80 E-value=1.5e-08 Score=86.34 Aligned_cols=73 Identities=11% Similarity=0.049 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
+.....++..|..+++.|+|++|+..|+++++.+|++ +.+++++|.++.++|++++|+..++++++.+|++..
T Consensus 36 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 36 VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 3444788889999999999999999999999999888 888999999999999999999999999999888773
No 63
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.79 E-value=2.9e-08 Score=83.11 Aligned_cols=72 Identities=13% Similarity=0.070 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
|.....+.+.|..+++.|+|++|+..|+++++++|++..+|+++|.+|.++|++++|+..++++++++|++.
T Consensus 16 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 87 (115)
T 2kat_A 16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG 87 (115)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 455789999999999999999999999999999999999999999999999999999999999999998643
No 64
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.78 E-value=5.8e-08 Score=86.20 Aligned_cols=90 Identities=34% Similarity=0.574 Sum_probs=81.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG 561 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~ 561 (575)
..+.+..+.++|..+++.|+|++|+..|.++++++|++..+++++|.++..++++++|+..++++++++|++. ..++
T Consensus 9 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a 88 (166)
T 1a17_A 9 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999999999999887 4566
Q ss_pred HHHHHHHHhhhhh
Q 008170 562 YVDCSMLIYLLCI 574 (575)
Q Consensus 562 ~~~~~l~~~~~~i 574 (575)
.++..+++|..|+
T Consensus 89 ~~~~~~~~~~~A~ 101 (166)
T 1a17_A 89 ASNMALGKFRAAL 101 (166)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHHHhccHHHHH
Confidence 6777777777664
No 65
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.76 E-value=1.4e-08 Score=104.20 Aligned_cols=90 Identities=19% Similarity=0.155 Sum_probs=77.8
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHH
Q 008170 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARV 560 (575)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~ 560 (575)
.++.....|.++|.++++.|+|++|+.+|+++++++|+++.+|+++|.+|.+++++++|+.+|+++++++|++. ..+
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l 347 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999887 345
Q ss_pred HHHHHHHHHhhhh
Q 008170 561 GYVDCSMLIYLLC 573 (575)
Q Consensus 561 ~~~~~~l~~~~~~ 573 (575)
+.+...++++..+
T Consensus 348 ~~~~~~~~~~~~a 360 (370)
T 1ihg_A 348 LKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666543
No 66
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.75 E-value=4.5e-08 Score=103.54 Aligned_cols=61 Identities=8% Similarity=0.095 Sum_probs=53.0
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~ 545 (575)
+|+....|+++|.++++.|+|++|+..|+++++++|++..++.+++.++.++++++++...
T Consensus 347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999988764
No 67
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.74 E-value=7.6e-08 Score=81.28 Aligned_cols=93 Identities=33% Similarity=0.564 Sum_probs=82.5
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---H
Q 008170 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---A 558 (575)
Q Consensus 482 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~ 558 (575)
...++.....+...|..++..|+|++|+..|+++++.+|++..+++++|.++..++++++|+..++++++++|++. .
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 84 (131)
T 2vyi_A 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence 3456788999999999999999999999999999999999999999999999999999999999999999999887 4
Q ss_pred HHHHHHHHHHHhhhhh
Q 008170 559 RVGYVDCSMLIYLLCI 574 (575)
Q Consensus 559 ~~~~~~~~l~~~~~~i 574 (575)
.++.++..++++..|+
T Consensus 85 ~~~~~~~~~~~~~~A~ 100 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAV 100 (131)
T ss_dssp HHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCHHHHH
Confidence 5666677777776654
No 68
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.73 E-value=9.4e-09 Score=104.26 Aligned_cols=67 Identities=16% Similarity=0.162 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
.|.++|.++++.|+|++|+..|+++|+++|++..+|+++|.+|..+++|++|+.+|+++++++|++.
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~ 298 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK 298 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence 4455555555555555555555555555555555555555555555555555555555555555544
No 69
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.72 E-value=7.5e-08 Score=98.80 Aligned_cols=61 Identities=8% Similarity=0.070 Sum_probs=56.5
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~ 545 (575)
+|+.+..|+.+|..+++.|+|++|+..|+++++++|++..++.+++.++.++++++++.+.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999999999999999999999999998887653
No 70
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.71 E-value=5.1e-08 Score=88.30 Aligned_cols=89 Identities=19% Similarity=0.216 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhCcccH---HH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAA-YLELGCF--QQAEEDCSKTISLDKKVR---AR 559 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~-~~~l~~~--~~Ai~~~~~al~l~P~~~---~~ 559 (575)
|.....+...|..++..|+|++|+..|.++++++|+++.+++++|.+ +...+++ ++|+..++++++++|++. ..
T Consensus 41 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 120 (177)
T 2e2e_A 41 PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALML 120 (177)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHH
Confidence 34567888899999999999999999999999999888899999988 7788888 999999999999988877 35
Q ss_pred HHHHHHHHHHhhhhh
Q 008170 560 VGYVDCSMLIYLLCI 574 (575)
Q Consensus 560 ~~~~~~~l~~~~~~i 574 (575)
++.++...++|..|+
T Consensus 121 la~~~~~~g~~~~A~ 135 (177)
T 2e2e_A 121 LASDAFMQANYAQAI 135 (177)
T ss_dssp HHHHHHHTTCHHHHH
T ss_pred HHHHHHHcccHHHHH
Confidence 566666667766654
No 71
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.70 E-value=1e-07 Score=81.06 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVG 561 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~ 561 (575)
|+....+...|..+++.|++++|+..|+++++++|++..+++++|.++.+++++++|+..++++++++|++...+.
T Consensus 47 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 122 (133)
T 2lni_A 47 PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAD 122 (133)
T ss_dssp TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHH
T ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHH
Confidence 4457889999999999999999999999999999999999999999999999999999999999999998775333
No 72
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.70 E-value=1.1e-07 Score=79.54 Aligned_cols=73 Identities=27% Similarity=0.457 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRAR 559 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~ 559 (575)
.....+...|..+++.|++++|+..|.++++.+|++...+++++.++.+++++++|+..++++++++|++...
T Consensus 41 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 113 (125)
T 1na0_A 41 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113 (125)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Confidence 3455667777777777777777777777777777777777777777777777777777777777777776643
No 73
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.69 E-value=1.3e-07 Score=87.36 Aligned_cols=68 Identities=12% Similarity=-0.009 Sum_probs=53.9
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHh
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAE-EDCSKTISL 552 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai-~~~~~al~l 552 (575)
+|.....+..+|..+++.|+|++|+..|+++++++|++..++.+++.++..++++.++. ..+.+.+..
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45668899999999999999999999999999999999999999999999999998888 455555543
No 74
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.69 E-value=1.3e-07 Score=78.31 Aligned_cols=78 Identities=18% Similarity=0.140 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYV 563 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~ 563 (575)
|.....+...|..+++.|+|++|+..|+++++++|++..+++++|.++.++|++++|+..++++++++|++...+..+
T Consensus 35 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 112 (118)
T 1elw_A 35 PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112 (118)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 344778999999999999999999999999999999999999999999999999999999999999999988644433
No 75
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.69 E-value=3.9e-08 Score=84.34 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV 556 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~ 556 (575)
|+.+..|.++|.++++.|+|++|++.|+++|+++|++ +.+|+++|.++..++++++|++.|+++|+++|+.
T Consensus 39 p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 39 PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 5668899999999999999999999999999998865 4689999999999999999999999999998863
No 76
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.68 E-value=6.7e-08 Score=93.59 Aligned_cols=90 Identities=12% Similarity=0.092 Sum_probs=79.3
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH----
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---- 557 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---- 557 (575)
++..+..++.+|..++++|+|++|+..|+++++.+|++ ..+++++|.+|+++|+|++|+..|+++++++|++.
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 45668899999999999999999999999999999999 99999999999999999999999999999998653
Q ss_pred --HHHHHHHHH--------HHHhhhhh
Q 008170 558 --ARVGYVDCS--------MLIYLLCI 574 (575)
Q Consensus 558 --~~~~~~~~~--------l~~~~~~i 574 (575)
..+|.++.. .+++..|+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~ 117 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAI 117 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHH
Confidence 355666666 67777665
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.68 E-value=6.5e-08 Score=91.43 Aligned_cols=86 Identities=21% Similarity=0.084 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH----------H
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR----------A 558 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~----------~ 558 (575)
...+..+|..+++.|+|++|+..|+++++++|++..+++++|.+|.++|++++|+..++++++++|++. .
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 121 (228)
T 4i17_A 42 SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYL 121 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 467888999999999999999999999999999999999999999999999999999999999999876 3
Q ss_pred HHHHHHHHHHHhhhhh
Q 008170 559 RVGYVDCSMLIYLLCI 574 (575)
Q Consensus 559 ~~~~~~~~l~~~~~~i 574 (575)
.+|.++..+++|..|+
T Consensus 122 ~~g~~~~~~~~~~~A~ 137 (228)
T 4i17_A 122 KEGQKFQQAGNIEKAE 137 (228)
T ss_dssp HHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHhccHHHHH
Confidence 4555566666666654
No 78
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.66 E-value=9.6e-08 Score=88.98 Aligned_cols=87 Identities=13% Similarity=0.088 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH----------
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---------- 557 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---------- 557 (575)
.+..+.+.|..+++.|+|++|+..|+++++++|+++.+++++|.+|.++|++++|+.++++++++.|++.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 115 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence 3679999999999999999999999999999999999999999999999999999999999999887533
Q ss_pred ---------HHHHHHHHHHHHhhhhh
Q 008170 558 ---------ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 558 ---------~~~~~~~~~l~~~~~~i 574 (575)
..++.++..+++|..|+
T Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~ 141 (213)
T 1hh8_A 116 FKLFACEVLYNIAFMYAKKEEWKKAE 141 (213)
T ss_dssp CEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCccchHHHHHHHHHHHHccCHHHHH
Confidence 46777777777777664
No 79
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.66 E-value=1.3e-07 Score=81.27 Aligned_cols=70 Identities=19% Similarity=0.171 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
|.....+.++|..+++.|+|++|+..|+++++++|+++.+++++|.++.++|++++|+..++++++++|+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 40 PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 4457899999999999999999999999999999999999999999999999999999999999999998
No 80
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.64 E-value=9.5e-08 Score=101.57 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
|+.+..|.++|..++++|+|++|++.|+++++++|+++.+++++|.+|.++|++++|++.++++++++|++. ..++.
T Consensus 37 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~ 116 (477)
T 1wao_1 37 PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 116 (477)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 455889999999999999999999999999999999999999999999999999999999999999999876 34444
Q ss_pred H--HHHHHHhhhhh
Q 008170 563 V--DCSMLIYLLCI 574 (575)
Q Consensus 563 ~--~~~l~~~~~~i 574 (575)
+ +...++|..|+
T Consensus 117 ~~~~~~~g~~~~A~ 130 (477)
T 1wao_1 117 CNKIVKQKAFERAI 130 (477)
T ss_dssp HHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHHHHh
Confidence 4 66678888776
No 81
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.64 E-value=1.7e-08 Score=107.44 Aligned_cols=89 Identities=35% Similarity=0.576 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
++.+..+.++|+.++++|+|++|++.|+++++++|+++.+|+++|.+|.+++++++|+++++++++++|++. ..+|.
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 567778889999999999999999999999999999999999999999999999999999999999999987 46777
Q ss_pred HHHHHHHhhhhh
Q 008170 563 VDCSMLIYLLCI 574 (575)
Q Consensus 563 ~~~~l~~~~~~i 574 (575)
++..+++|..|+
T Consensus 83 ~~~~~g~~~eA~ 94 (477)
T 1wao_1 83 SNMALGKFRAAL 94 (477)
T ss_dssp HHHHHTCHHHHH
T ss_pred HHHHcCCHHHHH
Confidence 788888887775
No 82
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.63 E-value=1.9e-07 Score=89.07 Aligned_cols=90 Identities=31% Similarity=0.423 Sum_probs=80.7
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG 561 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~ 561 (575)
+|.....+...|..+++.|+|++|+..|+++++++|++..+++++|.++.++|++++|+..++++++++|++. ..++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 214 (258)
T 3uq3_A 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 214 (258)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 4778899999999999999999999999999999999999999999999999999999999999999999987 4566
Q ss_pred HHHHHHHHhhhhh
Q 008170 562 YVDCSMLIYLLCI 574 (575)
Q Consensus 562 ~~~~~l~~~~~~i 574 (575)
.++..++++..|+
T Consensus 215 ~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 215 TAQIAVKEYASAL 227 (258)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHHHHhhHHHHH
Confidence 6777777776654
No 83
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=3.2e-07 Score=79.61 Aligned_cols=92 Identities=27% Similarity=0.301 Sum_probs=82.6
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--
Q 008170 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR-- 557 (575)
Q Consensus 483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~-- 557 (575)
..++..+..++.+|..+++.|+|++|+..|+++++++|++ ..+++++|.++.+++++++|+..++++++++|++.
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 3456778999999999999999999999999999999998 89999999999999999999999999999999887
Q ss_pred -HHHHHHHHHHHHhhhhh
Q 008170 558 -ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 558 -~~~~~~~~~l~~~~~~i 574 (575)
..++.++..+++|..|+
T Consensus 102 ~~~~a~~~~~~~~~~~A~ 119 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAV 119 (148)
T ss_dssp HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHH
Confidence 45677777777777664
No 84
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.62 E-value=4.7e-08 Score=86.35 Aligned_cols=68 Identities=19% Similarity=0.178 Sum_probs=59.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcccHH---HHHHHHHHH
Q 008170 501 KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF----------QQAEEDCSKTISLDKKVRA---RVGYVDCSM 567 (575)
Q Consensus 501 ~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~----------~~Ai~~~~~al~l~P~~~~---~~~~~~~~l 567 (575)
+.++|++|+..|+++++++|+++.+|+|+|.++.+++++ ++|+..|+++|+++|++.. .+|.++..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 556799999999999999999999999999999999875 5999999999999999884 455555555
Q ss_pred H
Q 008170 568 L 568 (575)
Q Consensus 568 ~ 568 (575)
+
T Consensus 94 g 94 (158)
T 1zu2_A 94 A 94 (158)
T ss_dssp H
T ss_pred c
Confidence 4
No 85
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.62 E-value=1.6e-07 Score=90.75 Aligned_cols=90 Identities=18% Similarity=0.086 Sum_probs=74.9
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG 561 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~ 561 (575)
++..+..+..+|..++..|+|++|+..|+++++++|++..+++++|.++..+|++++|+..++++++++|++. ..++
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 118 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence 3677888888999999999999999999999999998888999999999999999999999999999888766 4566
Q ss_pred HHHHHHHHhhhhh
Q 008170 562 YVDCSMLIYLLCI 574 (575)
Q Consensus 562 ~~~~~l~~~~~~i 574 (575)
.++..+++|..|+
T Consensus 119 ~~~~~~g~~~~A~ 131 (275)
T 1xnf_A 119 IALYYGGRDKLAQ 131 (275)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHHHhccHHHHH
Confidence 6666667766654
No 86
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.62 E-value=3.2e-07 Score=77.87 Aligned_cols=85 Identities=13% Similarity=0.069 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---H---HHH
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA---TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV---R---ARV 560 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~---~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~---~---~~~ 560 (575)
..++++|..+++.|+|++|+..|+++++.+|++. .+++++|.++.++|++++|+..++++++++|++ . ..+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3578899999999999999999999999999988 899999999999999999999999999999998 4 456
Q ss_pred HHHHHHHHHhhhhh
Q 008170 561 GYVDCSMLIYLLCI 574 (575)
Q Consensus 561 ~~~~~~l~~~~~~i 574 (575)
+.++..+|++..|+
T Consensus 83 a~~~~~~g~~~~A~ 96 (129)
T 2xev_A 83 GLSQYGEGKNTEAQ 96 (129)
T ss_dssp HHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHH
Confidence 77777778887765
No 87
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.62 E-value=1.7e-08 Score=84.95 Aligned_cols=74 Identities=19% Similarity=0.151 Sum_probs=63.2
Q ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170 501 KGKQWNKAVNYYSEAIKL---NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 501 ~~g~~~~Ai~~~~~al~~---~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~~~i 574 (575)
.+|+|++|+..|++++++ +|++..+++++|.+|.++|+|++|+..++++++++|++. ..++.++..+|+|..|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 699999999999999999999999999999999999988 46777777788887765
No 88
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.59 E-value=7.8e-08 Score=106.99 Aligned_cols=88 Identities=14% Similarity=-0.076 Sum_probs=75.7
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG 561 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~ 561 (575)
+|+....+..+|..+++.|+|++|+..|+++++++|+++.+|+++|.+|.++|++++|+.+|+++++++|++. ..+|
T Consensus 429 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg 508 (681)
T 2pzi_A 429 FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALA 508 (681)
T ss_dssp CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 4666788899999999999999999999999999999999999999999999999999999999999999876 4566
Q ss_pred HHHHHHHHhhh
Q 008170 562 YVDCSMLIYLL 572 (575)
Q Consensus 562 ~~~~~l~~~~~ 572 (575)
.++..+|+|..
T Consensus 509 ~~~~~~g~~~~ 519 (681)
T 2pzi_A 509 ATAELAGNTDE 519 (681)
T ss_dssp HHHHHHTCCCT
T ss_pred HHHHHcCChHH
Confidence 77777777654
No 89
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.57 E-value=6.4e-07 Score=74.72 Aligned_cols=87 Identities=26% Similarity=0.377 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD 564 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~ 564 (575)
....+...|..+++.|++++|+..|.++++.+|++..++++++.++.+.+++++|+..++++++++|++. ..++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 3778999999999999999999999999999999999999999999999999999999999999999877 3556666
Q ss_pred HHHHHhhhhh
Q 008170 565 CSMLIYLLCI 574 (575)
Q Consensus 565 ~~l~~~~~~i 574 (575)
...+++..|+
T Consensus 88 ~~~~~~~~A~ 97 (125)
T 1na0_A 88 YKQGDYDEAI 97 (125)
T ss_dssp HHTTCHHHHH
T ss_pred HHhcCHHHHH
Confidence 6666666553
No 90
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.54 E-value=1.6e-07 Score=100.51 Aligned_cols=89 Identities=26% Similarity=0.405 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
.+.+..|+++|+.++++|+|++|+..|+++++.+|+++.+++++|.+|.++|++++|+..|+++++++|++. ..++.
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999999999999999999999988 46677
Q ss_pred HHHHHHHhhhhh
Q 008170 563 VDCSMLIYLLCI 574 (575)
Q Consensus 563 ~~~~l~~~~~~i 574 (575)
++..+|++..|+
T Consensus 102 ~~~~~g~~~~A~ 113 (537)
T 3fp2_A 102 ANESLGNFTDAM 113 (537)
T ss_dssp HHHHHTCHHHHH
T ss_pred HHHHcCCHHHHH
Confidence 777778877765
No 91
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.54 E-value=3.8e-07 Score=84.99 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
+..+..+...|..+++.|++++|+..|+++++.+|++..+++.+|.++..+|++++|+..++++++++|++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 76 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA 76 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 344455555555555555555555555555555555555555555555555555555555555555555444
No 92
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.53 E-value=2.3e-07 Score=98.52 Aligned_cols=89 Identities=19% Similarity=0.082 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008170 486 IDASELLKEKGNAAFKG--------KQWNKAVNYYSEAIKLNG---TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~--------g~~~~Ai~~~~~al~~~p---~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P 554 (575)
|+....|.++|..++.. |+|++|+..|+++++++| +++.+|+++|.+|.++|++++|+..|+++++++|
T Consensus 210 p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 210 VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45678999999999999 999999999999999999 9999999999999999999999999999999999
Q ss_pred ccH---HHHHHHHHHHHHhhhhh
Q 008170 555 KVR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 555 ~~~---~~~~~~~~~l~~~~~~i 574 (575)
++. ..++.++..++++..|+
T Consensus 290 ~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 290 AWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 988 46677778888887765
No 93
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.52 E-value=4.6e-07 Score=90.85 Aligned_cols=87 Identities=20% Similarity=0.153 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD 564 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~ 564 (575)
+++.+..+|..+++.|+|++|+..|+++++.+|+++.+++++|.++..+|++++|+..++++++++|++. ..++.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3567777888888888888888888888888888888888888888888888888888888888887766 4556666
Q ss_pred HHHHHhhhhh
Q 008170 565 CSMLIYLLCI 574 (575)
Q Consensus 565 ~~l~~~~~~i 574 (575)
...++|..|+
T Consensus 82 ~~~~~~~~A~ 91 (359)
T 3ieg_A 82 LKQGKLDEAE 91 (359)
T ss_dssp HHHTCHHHHH
T ss_pred HHcCChHHHH
Confidence 6666666554
No 94
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.52 E-value=3.4e-07 Score=73.71 Aligned_cols=73 Identities=12% Similarity=0.020 Sum_probs=67.1
Q ss_pred ChhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 485 SIDASELLKEKGNAAFKGKQ---WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~---~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
+|+++..+..+|..++..++ .++|...++++++++|+++.+++.+|..+++.|+|++|+..++++++.+|+.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 46678999999999976655 79999999999999999999999999999999999999999999999999843
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.51 E-value=6.2e-08 Score=107.81 Aligned_cols=89 Identities=10% Similarity=-0.078 Sum_probs=81.3
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG 561 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~ 561 (575)
+|++...|+++|..+++.|+|++|+..|+++++++|+++.+|+++|.++.++|++++ +.+|+++++++|++. ..+|
T Consensus 463 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg 541 (681)
T 2pzi_A 463 VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLA 541 (681)
T ss_dssp HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHH
Confidence 356688999999999999999999999999999999999999999999999999999 999999999999987 4677
Q ss_pred HHHHHHHHhhhhh
Q 008170 562 YVDCSMLIYLLCI 574 (575)
Q Consensus 562 ~~~~~l~~~~~~i 574 (575)
.++..+|+|..|+
T Consensus 542 ~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 542 RARSAEGDRVGAV 554 (681)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHHHcCCHHHHH
Confidence 7777788887775
No 96
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.51 E-value=3.4e-07 Score=92.92 Aligned_cols=87 Identities=11% Similarity=0.177 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD 564 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~ 564 (575)
.+..+.+.|..+.+.|+|++|+..|+++++++|+++.+|+++|.++.++|++++|+..|+++++++|++. ..++.++
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC 291 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999999887 4677777
Q ss_pred HHHHHhhhhh
Q 008170 565 CSMLIYLLCI 574 (575)
Q Consensus 565 ~~l~~~~~~i 574 (575)
..+|+|..|+
T Consensus 292 ~~~g~~~~A~ 301 (365)
T 4eqf_A 292 INLGAYREAV 301 (365)
T ss_dssp HHHTCCHHHH
T ss_pred HHCCCHHHHH
Confidence 7788877765
No 97
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.50 E-value=3.6e-07 Score=96.92 Aligned_cols=88 Identities=25% Similarity=0.432 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
.+.+..|+++|+.+++.|+|++|+..|+++++.+| ++.+++++|.++.++|++++|+.+++++++++|++. ..++.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 46788999999999999999999999999999998 689999999999999999999999999999999987 45677
Q ss_pred HHHHHHHhhhhh
Q 008170 563 VDCSMLIYLLCI 574 (575)
Q Consensus 563 ~~~~l~~~~~~i 574 (575)
++..+|+|..|+
T Consensus 82 ~~~~~g~~~~A~ 93 (514)
T 2gw1_A 82 ANEGLGKFADAM 93 (514)
T ss_dssp HHHHTTCHHHHH
T ss_pred HHHHHhhHHHHH
Confidence 777777777665
No 98
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.50 E-value=2.6e-07 Score=100.33 Aligned_cols=90 Identities=10% Similarity=-0.017 Sum_probs=68.5
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG 561 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~ 561 (575)
+|+....+.++|..++++|+|++|++.|+++++++|++..+++++|.+|.++|++++|++.++++++++|++. ..++
T Consensus 53 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 132 (568)
T 2vsy_A 53 HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132 (568)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4556777888888888888888888888888888888888888888888888888888888888888888776 3455
Q ss_pred HHHHHH---HHhhhhh
Q 008170 562 YVDCSM---LIYLLCI 574 (575)
Q Consensus 562 ~~~~~l---~~~~~~i 574 (575)
.++..+ +++..|+
T Consensus 133 ~~~~~~~~~g~~~~A~ 148 (568)
T 2vsy_A 133 NWRRRLCDWRALDVLS 148 (568)
T ss_dssp HHHHHTTCCTTHHHHH
T ss_pred HHHHHhhccccHHHHH
Confidence 555555 5555543
No 99
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.49 E-value=1.5e-06 Score=71.46 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVG 561 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-------p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~ 561 (575)
+...++.|..++++++|.+|+..|.+|++.. +....++.++|.|++++|++++|+..++++++++|++...+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 5677899999999999999999999999873 345889999999999999999999999999999999986444
Q ss_pred HH
Q 008170 562 YV 563 (575)
Q Consensus 562 ~~ 563 (575)
..
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 33
No 100
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.49 E-value=3e-07 Score=75.34 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCccc
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT--SATYYSNRAAAYLEL-GCFQQAEEDCSKTISLDKKV 556 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--~~~~~~~ra~~~~~l-~~~~~Ai~~~~~al~l~P~~ 556 (575)
.....+.+.|..+++.|+|++|+..|+++++++|+ +..+++++|.++.++ +++++|++.++++++.+|+.
T Consensus 38 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 38 EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 34678999999999999999999999999999999 999999999999999 99999999999999999875
No 101
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.48 E-value=7e-07 Score=80.20 Aligned_cols=88 Identities=14% Similarity=0.086 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYV 563 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~ 563 (575)
.....+...|..+++.|++++|++.|+++++.+|++..++.++|.++.++|++++|+..++++++++|++. ..++.+
T Consensus 74 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 153 (186)
T 3as5_A 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFS 153 (186)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 44678889999999999999999999999999999999999999999999999999999999999999876 456666
Q ss_pred HHHHHHhhhhh
Q 008170 564 DCSMLIYLLCI 574 (575)
Q Consensus 564 ~~~l~~~~~~i 574 (575)
+...+++..|+
T Consensus 154 ~~~~~~~~~A~ 164 (186)
T 3as5_A 154 YEQMGRHEEAL 164 (186)
T ss_dssp HHHTTCHHHHH
T ss_pred HHHcCCHHHHH
Confidence 66667766654
No 102
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.48 E-value=3.5e-07 Score=92.88 Aligned_cols=87 Identities=11% Similarity=-0.064 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD 564 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~ 564 (575)
....++++|..+++.|+|++|+..|+++++.+|+++.+++++|.++.++|++++|+..|+++++++|++. ..++.++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3445677777777777777777777777777777777777777777777777777777777777777766 3455555
Q ss_pred HHHHHhhhhh
Q 008170 565 CSMLIYLLCI 574 (575)
Q Consensus 565 ~~l~~~~~~i 574 (575)
..+|+|..|+
T Consensus 144 ~~~g~~~~A~ 153 (365)
T 4eqf_A 144 TNTSHQQDAC 153 (365)
T ss_dssp HHTTCHHHHH
T ss_pred HccccHHHHH
Confidence 5556655543
No 103
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.47 E-value=8e-07 Score=79.81 Aligned_cols=89 Identities=10% Similarity=-0.002 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
+.....+...|..+++.|++++|+..|.++++.+|++..++.+++.++...+++++|+..++++++++|++. ..++.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 118 (186)
T 3as5_A 39 AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGV 118 (186)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHH
Confidence 345788999999999999999999999999999999999999999999999999999999999999999887 34566
Q ss_pred HHHHHHHhhhhh
Q 008170 563 VDCSMLIYLLCI 574 (575)
Q Consensus 563 ~~~~l~~~~~~i 574 (575)
++...+++..|+
T Consensus 119 ~~~~~~~~~~A~ 130 (186)
T 3as5_A 119 ALDNLGRFDEAI 130 (186)
T ss_dssp HHHHTTCHHHHH
T ss_pred HHHHcCcHHHHH
Confidence 666667776654
No 104
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.47 E-value=5e-07 Score=84.06 Aligned_cols=86 Identities=22% Similarity=0.272 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
..++..++++|+.+++.|+|++|+..|++++ +| ++.+++++|.+|.++|++++|+..|+++++++|++. ..+|.
T Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 3 LVEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4567788999999999999999999999996 44 789999999999999999999999999999999987 45677
Q ss_pred HHHHHHHhhhhh
Q 008170 563 VDCSMLIYLLCI 574 (575)
Q Consensus 563 ~~~~l~~~~~~i 574 (575)
++..+++|..|+
T Consensus 80 ~~~~~~~~~~A~ 91 (213)
T 1hh8_A 80 LYYQTEKYDLAI 91 (213)
T ss_dssp HHHHTTCHHHHH
T ss_pred HHHHcccHHHHH
Confidence 777778887765
No 105
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.47 E-value=6.4e-07 Score=93.50 Aligned_cols=91 Identities=20% Similarity=0.156 Sum_probs=68.1
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHH
Q 008170 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARV 560 (575)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~ 560 (575)
.+|..+..+..+|..+++.|+|++|+..|+++++.+|+++.+++++|.++.++|++++|+..++++++++|++. ..+
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 100 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 34677778888888888888888888888888888888888888888888888888888888888888887766 345
Q ss_pred HHHHHHHHHhhhhh
Q 008170 561 GYVDCSMLIYLLCI 574 (575)
Q Consensus 561 ~~~~~~l~~~~~~i 574 (575)
+.++..+|++..|+
T Consensus 101 ~~~~~~~g~~~~A~ 114 (450)
T 2y4t_A 101 GHLLLKQGKLDEAE 114 (450)
T ss_dssp HHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHH
Confidence 55566666665553
No 106
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.46 E-value=7.2e-07 Score=75.30 Aligned_cols=87 Identities=28% Similarity=0.391 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD 564 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~ 564 (575)
....+...|..+++.|++++|+..|.++++.+|++...+++++.++...+++++|+..++++++.+|++. ..++.++
T Consensus 34 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 113 (136)
T 2fo7_A 34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113 (136)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 4678888999999999999999999999999999999999999999999999999999999999999876 3455555
Q ss_pred HHHHHhhhhh
Q 008170 565 CSMLIYLLCI 574 (575)
Q Consensus 565 ~~l~~~~~~i 574 (575)
...+++..|+
T Consensus 114 ~~~~~~~~A~ 123 (136)
T 2fo7_A 114 YKQGDYDEAI 123 (136)
T ss_dssp HTTTCHHHHH
T ss_pred HHHccHHHHH
Confidence 5556665543
No 107
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.46 E-value=6e-07 Score=85.56 Aligned_cols=88 Identities=26% Similarity=0.370 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------H-
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV-------R- 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~-------~- 557 (575)
+..++.+.++|..+++.|+|++|+..|+++++++ +++.+++++|.++..+|++++|+..++++++++|++ .
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 4678899999999999999999999999999999 999999999999999999999999999999999875 3
Q ss_pred --HHHHHHHHHHHHhhhhh
Q 008170 558 --ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 558 --~~~~~~~~~l~~~~~~i 574 (575)
..++.++..+++|..|+
T Consensus 81 ~~~~l~~~~~~~~~~~~A~ 99 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTI 99 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcccHHHHH
Confidence 45666777777776664
No 108
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.45 E-value=6.7e-07 Score=85.38 Aligned_cols=89 Identities=12% Similarity=0.031 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccH---HHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS--LDKKVR---ARV 560 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~--l~P~~~---~~~ 560 (575)
|.....+...|..+++.|++++|++.|.++++.+|++..++++++.++..+|++++|+..++++++ .+|++. ..+
T Consensus 68 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 147 (252)
T 2ho1_A 68 PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENL 147 (252)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHH
Confidence 445667777777777777777777777777777777777777777777777777777777777777 566544 345
Q ss_pred HHHHHHHHHhhhhh
Q 008170 561 GYVDCSMLIYLLCI 574 (575)
Q Consensus 561 ~~~~~~l~~~~~~i 574 (575)
+.++...+++..|+
T Consensus 148 a~~~~~~g~~~~A~ 161 (252)
T 2ho1_A 148 GLVSLQMKKPAQAK 161 (252)
T ss_dssp HHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHH
Confidence 55556666666554
No 109
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.45 E-value=8.6e-07 Score=89.71 Aligned_cols=87 Identities=10% Similarity=0.090 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD 564 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~ 564 (575)
....+...|..+++.|++++|+..|+++++++|+++.+++++|.++.++|++++|+..|+++++++|++. ..++.++
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999999999999999999999999877 4677777
Q ss_pred HHHHHhhhhh
Q 008170 565 CSMLIYLLCI 574 (575)
Q Consensus 565 ~~l~~~~~~i 574 (575)
..+|+|..|+
T Consensus 296 ~~~g~~~~A~ 305 (368)
T 1fch_A 296 INLGAHREAV 305 (368)
T ss_dssp HHHTCHHHHH
T ss_pred HHCCCHHHHH
Confidence 7788887765
No 110
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.44 E-value=9.6e-07 Score=85.24 Aligned_cols=88 Identities=17% Similarity=0.040 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH--HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA--RVGYV 563 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~--~~~~~ 563 (575)
|.....+...|..+++.|+|++|+..|+++++++|++..+++++|.++.++|++++|+..++++++++|++.. ....+
T Consensus 74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 153 (275)
T 1xnf_A 74 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL 153 (275)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 3457789999999999999999999999999999999999999999999999999999999999999999872 22223
Q ss_pred HHHHHHhhhh
Q 008170 564 DCSMLIYLLC 573 (575)
Q Consensus 564 ~~~l~~~~~~ 573 (575)
....+++..|
T Consensus 154 ~~~~~~~~~A 163 (275)
T 1xnf_A 154 AEQKLDEKQA 163 (275)
T ss_dssp HHHHHCHHHH
T ss_pred HHHhcCHHHH
Confidence 3344555444
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.43 E-value=7.6e-07 Score=96.69 Aligned_cols=89 Identities=4% Similarity=-0.188 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
|+....+.++|..++++|+|++|++.|+++++++|++..+++++|.+|.++|++++|++.++++++++|++. ..++.
T Consensus 20 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 99 (568)
T 2vsy_A 20 PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGH 99 (568)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 556778888999999999999999999999999999999999999999999999999999999999988877 45666
Q ss_pred HHHHHHHhhhhh
Q 008170 563 VDCSMLIYLLCI 574 (575)
Q Consensus 563 ~~~~l~~~~~~i 574 (575)
++..+++|..|+
T Consensus 100 ~~~~~g~~~~A~ 111 (568)
T 2vsy_A 100 ALEDAGQAEAAA 111 (568)
T ss_dssp HHHHTTCHHHHH
T ss_pred HHHHcCCHHHHH
Confidence 666667776654
No 112
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.43 E-value=4.4e-07 Score=96.36 Aligned_cols=88 Identities=14% Similarity=0.099 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCccc
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL---------GCFQQAEEDCSKTISLDKKV 556 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l---------~~~~~Ai~~~~~al~l~P~~ 556 (575)
|+....|..+|..+++.|+|++|+.+|+++++++|+ ..+++++|.++..+ +++++|+..|+++++++|++
T Consensus 134 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 212 (474)
T 4abn_A 134 PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD 212 (474)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC
Confidence 456789999999999999999999999999999999 79999999999999 99999999999999999998
Q ss_pred HH---HHHHHHHHH--------HHhhhhh
Q 008170 557 RA---RVGYVDCSM--------LIYLLCI 574 (575)
Q Consensus 557 ~~---~~~~~~~~l--------~~~~~~i 574 (575)
.. .+|.++..+ ++|..|+
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 84 556666666 7787775
No 113
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.43 E-value=9.2e-07 Score=74.65 Aligned_cols=85 Identities=28% Similarity=0.400 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHHHHHH
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVGYVDCS 566 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~~~~~~ 566 (575)
..+...|..+++.|++++|+..|.++++.+|++...+++++.++...+++++|+..++++++++|++.. .++.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999998763 45555555
Q ss_pred HHHhhhhh
Q 008170 567 MLIYLLCI 574 (575)
Q Consensus 567 l~~~~~~i 574 (575)
.+++..|+
T Consensus 82 ~~~~~~A~ 89 (136)
T 2fo7_A 82 QGDYDEAI 89 (136)
T ss_dssp TTCHHHHH
T ss_pred hcCHHHHH
Confidence 56665553
No 114
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.42 E-value=1.2e-06 Score=82.76 Aligned_cols=87 Identities=15% Similarity=0.072 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD 564 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~ 564 (575)
....+...|..+++.|++++|+..|+++++.+|++..+++++|.++.++|++++|+..++++++.+|++. ..++.++
T Consensus 124 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 203 (243)
T 2q7f_A 124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY 203 (243)
T ss_dssp SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3455666777777777777777777777777777777777777777777777777777777777776655 3445555
Q ss_pred HHHHHhhhhh
Q 008170 565 CSMLIYLLCI 574 (575)
Q Consensus 565 ~~l~~~~~~i 574 (575)
...+++..|+
T Consensus 204 ~~~~~~~~A~ 213 (243)
T 2q7f_A 204 AYKENREKAL 213 (243)
T ss_dssp HHTTCTTHHH
T ss_pred HHccCHHHHH
Confidence 5555555443
No 115
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.42 E-value=1.2e-06 Score=82.84 Aligned_cols=89 Identities=10% Similarity=0.099 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
+.....+...|..+++.|++++|+..|+++++.+|++..++.++|.++.++|++++|+..++++++++|++. ..++.
T Consensus 88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 167 (243)
T 2q7f_A 88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGM 167 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 344566667777777777777777777777777777777777777777777777777777777777777655 34555
Q ss_pred HHHHHHHhhhhh
Q 008170 563 VDCSMLIYLLCI 574 (575)
Q Consensus 563 ~~~~l~~~~~~i 574 (575)
++...++|..|+
T Consensus 168 ~~~~~~~~~~A~ 179 (243)
T 2q7f_A 168 CLANEGMLDEAL 179 (243)
T ss_dssp HHHHHTCCHHHH
T ss_pred HHHHcCCHHHHH
Confidence 555566665553
No 116
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.42 E-value=3.7e-07 Score=93.59 Aligned_cols=88 Identities=18% Similarity=0.155 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
|..+..|..+|..+++.|++++|+..|+++++++|++..+|.+++.++.++|++++|+..++++++++|++. ..++.
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 143 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGN 143 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 344667777777777777777777777777777777777777777777777777777777777777777655 23444
Q ss_pred HHHHHHHhhhh
Q 008170 563 VDCSMLIYLLC 573 (575)
Q Consensus 563 ~~~~l~~~~~~ 573 (575)
++..+|++..|
T Consensus 144 ~~~~~g~~~~A 154 (388)
T 1w3b_A 144 LLKALGRLEEA 154 (388)
T ss_dssp HHHTTSCHHHH
T ss_pred HHHHccCHHHH
Confidence 44444444443
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.42 E-value=1.1e-06 Score=83.07 Aligned_cols=69 Identities=10% Similarity=0.101 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
+..++++|..++++|+|++|+..|+++++..|++ ..+++++|.+++++|+|++|+..|+++++++|++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~ 75 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 75 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 5678999999999999999999999999999876 47999999999999999999999999999999876
No 118
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.41 E-value=1.1e-06 Score=74.03 Aligned_cols=69 Identities=14% Similarity=0.267 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
.....+.+.|..+++.|+|++|+..|.++++++|++ ..+++++|.++.+++++++|+..++++++++|+
T Consensus 36 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 36 TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 346789999999999999999999999999999877 999999999999999999999999999999984
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.39 E-value=4.5e-07 Score=89.14 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV 556 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~ 556 (575)
|.....+.++|..+++.|+|++|+..|+++++++|++..+++++|.+|.++|++++|+.+++++++++|++
T Consensus 35 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 35 PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999976
No 120
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.38 E-value=3.5e-07 Score=92.56 Aligned_cols=73 Identities=15% Similarity=0.060 Sum_probs=31.0
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYL-ELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~-~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
+|++...|+++|..++..|+|++|+..|+++++++|++..++.+++.+.. ..++.+++...|.++++++|++.
T Consensus 260 ~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 260 EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 46678899999999999999999999999999999999999999999955 45678889999999999999876
No 121
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.37 E-value=1e-06 Score=83.31 Aligned_cols=72 Identities=17% Similarity=0.027 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH------------------cCCHHHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT---YYSNRAAAYLE------------------LGCFQQAEE 544 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~---~~~~ra~~~~~------------------l~~~~~Ai~ 544 (575)
+.....++.+|..+++.|+|++|+..|+++++.+|++.. +++++|.++.+ ++++++|+.
T Consensus 38 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 117 (225)
T 2yhc_A 38 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS 117 (225)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence 445678999999999999999999999999999999864 89999999987 578999999
Q ss_pred HHHHHHHhCcccH
Q 008170 545 DCSKTISLDKKVR 557 (575)
Q Consensus 545 ~~~~al~l~P~~~ 557 (575)
.|+++++.+|++.
T Consensus 118 ~~~~~l~~~P~~~ 130 (225)
T 2yhc_A 118 DFSKLVRGYPNSQ 130 (225)
T ss_dssp HHHHHHTTCTTCT
T ss_pred HHHHHHHHCcCCh
Confidence 9999999999876
No 122
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=1.2e-06 Score=89.69 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
+....+.+.|..+++.|++++|+..|+++++++|+++.++++++.++.++|++++|+..++++++++|++.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 305 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Confidence 33555566666666666666666666666666666666666666666666666666666666666666554
No 123
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.36 E-value=1.2e-06 Score=88.63 Aligned_cols=89 Identities=17% Similarity=0.148 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV--------- 556 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~--------- 556 (575)
|+....+...|..+.+.|++++|+..|+++++++|++..+++++|.++.++|++++|+..++++++++|++
T Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 327 (368)
T 1fch_A 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA 327 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCC
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccc
Confidence 44577899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred --H---HHHHHHHHHHHHhhhhh
Q 008170 557 --R---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 557 --~---~~~~~~~~~l~~~~~~i 574 (575)
. ..++.++..+|++..|.
T Consensus 328 ~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 328 MSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp CCHHHHHHHHHHHHHHTCGGGHH
T ss_pred hhhHHHHHHHHHHHHhCChHhHH
Confidence 3 46777788888877653
No 124
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.35 E-value=1.7e-06 Score=83.58 Aligned_cols=82 Identities=10% Similarity=-0.010 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHH
Q 008170 486 IDASELLKEKGNAAFK--------GKQWNKAVNYYSEAIKLNGTSATYY-----------------SNRAAAYLELGCFQ 540 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~--------~g~~~~Ai~~~~~al~~~p~~~~~~-----------------~~ra~~~~~l~~~~ 540 (575)
+.....++..|.++++ .|++++|+..|+++++.+|++..+. +++|.+|.++|+++
T Consensus 86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 165 (261)
T 3qky_A 86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYE 165 (261)
T ss_dssp TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence 4567889999999999 9999999999999999999986555 89999999999999
Q ss_pred HHHHHHHHHHHhCcccH------HHHHHHHHHH
Q 008170 541 QAEEDCSKTISLDKKVR------ARVGYVDCSM 567 (575)
Q Consensus 541 ~Ai~~~~~al~l~P~~~------~~~~~~~~~l 567 (575)
+|+..|+++++.+|++. ..++.++..+
T Consensus 166 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 166 AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 99999999999999843 3455555544
No 125
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.34 E-value=1.3e-06 Score=86.17 Aligned_cols=69 Identities=14% Similarity=0.138 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
.....+.++|..++++|++++|+..|+++++++|+++.+++++|.++.++|++++|+..++++++++|+
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~ 183 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD 183 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc
Confidence 457788999999999999999999999999999999999999999999999999988777776655554
No 126
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.33 E-value=2.2e-06 Score=84.74 Aligned_cols=88 Identities=14% Similarity=0.140 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYV 563 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~ 563 (575)
.....+...|..+++.|++++|+..|+++++.+|++..++.++|.++..+|++++|+..++++++++|++. ..++.+
T Consensus 170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999877 456667
Q ss_pred HHHHHHhhhhh
Q 008170 564 DCSMLIYLLCI 574 (575)
Q Consensus 564 ~~~l~~~~~~i 574 (575)
+..++++..|+
T Consensus 250 ~~~~g~~~~A~ 260 (327)
T 3cv0_A 250 YSNMSQYDLAA 260 (327)
T ss_dssp HHHTTCHHHHH
T ss_pred HHHhccHHHHH
Confidence 77777776664
No 127
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.32 E-value=3.3e-06 Score=80.46 Aligned_cols=89 Identities=10% Similarity=-0.006 Sum_probs=77.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVG 561 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~ 561 (575)
.+.....+...|..+++.|++++|+..|.++++.+|++..++++++.++.++|++++|+..++++++.+|++.. .++
T Consensus 137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 216 (252)
T 2ho1_A 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGI 216 (252)
T ss_dssp CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999998773 445
Q ss_pred HHHHHHHHhhhh
Q 008170 562 YVDCSMLIYLLC 573 (575)
Q Consensus 562 ~~~~~l~~~~~~ 573 (575)
.++...+++..|
T Consensus 217 ~~~~~~g~~~~A 228 (252)
T 2ho1_A 217 RLAKVFEDRDTA 228 (252)
T ss_dssp HHHHHTTCHHHH
T ss_pred HHHHHccCHHHH
Confidence 555555666554
No 128
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.31 E-value=1.4e-06 Score=72.54 Aligned_cols=69 Identities=9% Similarity=-0.044 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170 506 NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 506 ~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~~~i 574 (575)
++|+..|.++++.+|+++.+++++|.++..+|++++|+..|+++++++|++. ..++.++..+|++..|+
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 73 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGAR 73 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 3688999999999999999999999999999999999999999999999987 46677777778877664
No 129
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.28 E-value=3.1e-06 Score=78.64 Aligned_cols=75 Identities=15% Similarity=0.017 Sum_probs=63.5
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHH
Q 008170 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK-KVRA 558 (575)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P-~~~~ 558 (575)
..+.....+...|..+++.|++++|+..|+++++.+|++..++.+++.++.++|++++|+..++++++++| ++..
T Consensus 108 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 183 (225)
T 2vq2_A 108 TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD 183 (225)
T ss_dssp TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHH
T ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 44566778888888888888888888888888888888888888888888888888888888888888888 7664
No 130
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.27 E-value=1.7e-06 Score=85.32 Aligned_cols=66 Identities=12% Similarity=-0.025 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCc
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLEL-GCFQQAEEDCSKTISLDK 554 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l-~~~~~Ai~~~~~al~l~P 554 (575)
+..|.+.|+.+.+.|+|++|+.+|++++++.+.. +.++.++|.+|..+ |++++|+..|++++++.|
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~ 149 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA 149 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555544322 33455555555553 555555555555555544
No 131
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.27 E-value=3e-06 Score=76.60 Aligned_cols=71 Identities=8% Similarity=-0.041 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHhhhhh
Q 008170 504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR-----ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 504 ~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~-----~~~~~~~~~l~~~~~~i 574 (575)
+..+|+..|+++++++|+++.+++++|.++.++|++++|+..++++++++|++. ..++.++..+|++..++
T Consensus 89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 334568888888999999999999999999999999999999999999998752 45677777777665543
No 132
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.26 E-value=2.8e-06 Score=83.97 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----------
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK---------- 555 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~---------- 555 (575)
|.....+...|..+++.|++++|+..|+++++++|++..++++++.++.++|++++|+..++++++++|+
T Consensus 203 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 282 (327)
T 3cv0_A 203 PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASR 282 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CC
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchh
Confidence 4457789999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --cH---HHHHHHHHHHHHhhhhh
Q 008170 556 --VR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 556 --~~---~~~~~~~~~l~~~~~~i 574 (575)
+. ..++.++..+|++..|+
T Consensus 283 ~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 283 EATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCCHHHHH
Confidence 44 45666777777776553
No 133
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.26 E-value=5.2e-07 Score=81.72 Aligned_cols=64 Identities=14% Similarity=0.030 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008170 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554 (575)
Q Consensus 491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P 554 (575)
.+.++|..+++.|++++|+..|+++++++|+++.+++++|.++.++|++++|+..++++++++|
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p 71 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ 71 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence 4455555555555555555555555555555555555555555555555555555555555554
No 134
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.26 E-value=2.4e-06 Score=84.25 Aligned_cols=88 Identities=16% Similarity=0.114 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--
Q 008170 487 DASELLKEKGNAAFKG-KQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR-- 557 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~-g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~-- 557 (575)
..+..+.+.|..+.++ |+|++|+.+|++++++.|.+ ..++.++|.++.++|+|++|+..|+++++++|++.
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence 4577899999999997 99999999999999998754 57899999999999999999999999999998743
Q ss_pred --------HHHHHHHHHHHHhhhhh
Q 008170 558 --------ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 558 --------~~~~~~~~~l~~~~~~i 574 (575)
..+|.++..+|++..|+
T Consensus 195 ~~~~~~~~~~lg~~~~~~g~~~~A~ 219 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAATDAVAAA 219 (292)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34566677777776654
No 135
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.25 E-value=4.9e-06 Score=82.17 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCcccHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQ-AEEDCSKTISLDKKVRA 558 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~-Ai~~~~~al~l~P~~~~ 558 (575)
|.+...+.++|..+.+.|+|++|+..|+++++++|+++.+++|++.++..+|++.+ +.+.++++++++|+++.
T Consensus 197 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 197 SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 34578999999999999999999999999999999999999999999999999976 56888999999999984
No 136
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.25 E-value=2.6e-06 Score=84.42 Aligned_cols=89 Identities=15% Similarity=-0.005 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
|+....+...|..+++.|++++|+..|+++++++|++...+.++|.++..++++++|+..++++++++|++. ..++.
T Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~ 201 (330)
T 3hym_B 122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGV 201 (330)
T ss_dssp TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 344677999999999999999999999999999999999999999999999999999999999999999887 45666
Q ss_pred HHHHHHHhhhhh
Q 008170 563 VDCSMLIYLLCI 574 (575)
Q Consensus 563 ~~~~l~~~~~~i 574 (575)
++...++|..|+
T Consensus 202 ~~~~~~~~~~A~ 213 (330)
T 3hym_B 202 VAFQNGEWKTAE 213 (330)
T ss_dssp HHHHTTCHHHHH
T ss_pred HHHHcccHHHHH
Confidence 677777776654
No 137
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.25 E-value=2.8e-06 Score=83.90 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=64.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHHHHHHHHHhh
Q 008170 497 NAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVGYVDCSMLIYL 571 (575)
Q Consensus 497 ~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~~~~~~l~~~~ 571 (575)
+.+...|++++|+..|+++++.+|+++.+++++|.++.++|++++|+..++++++++|+++. .++.++..+|++.
T Consensus 174 ~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~ 251 (291)
T 3mkr_A 174 SLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPP 251 (291)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH
T ss_pred HHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCH
Confidence 44445699999999999999999999999999999999999999999999999999999984 4455555555543
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.25 E-value=5.1e-06 Score=74.83 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 487 DASELLKEKGNA-AFKGKQW--NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 487 ~~a~~~~~~g~~-~~~~g~~--~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
.....+.+.|.. +++.|++ ++|+..|+++++++|++..+++++|.++..+|++++|+..++++++++|++.
T Consensus 76 ~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 346788999999 8899999 9999999999999999999999999999999999999999999999999875
No 139
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.25 E-value=3.1e-06 Score=83.86 Aligned_cols=85 Identities=16% Similarity=0.271 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN---------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR-- 557 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~---------p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~-- 557 (575)
...+...|..+++.|++++|+..|++++++. |.+..+++++|.++.++|++++|+..++++++++|++.
T Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 272 (330)
T 3hym_B 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAST 272 (330)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHH
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHH
Confidence 4445555555555555555555555555543 34445555555555555555555555555555555443
Q ss_pred -HHHHHHHHHHHHhhhh
Q 008170 558 -ARVGYVDCSMLIYLLC 573 (575)
Q Consensus 558 -~~~~~~~~~l~~~~~~ 573 (575)
..++.++..+|++..|
T Consensus 273 ~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 273 YSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhccHHHH
Confidence 2344444444444433
No 140
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.23 E-value=1.9e-06 Score=83.21 Aligned_cols=88 Identities=8% Similarity=0.075 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---H
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---A 558 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~ 558 (575)
|+....+..+|..+++.|+|++|+..|+++++ .|++ ..+|+++|.++..+|++++|+..++++++++|++. .
T Consensus 34 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 112 (272)
T 3u4t_A 34 YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYG 112 (272)
T ss_dssp CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHH
Confidence 44556788899999999999999999999998 4333 45689999999999999999999999999999876 4
Q ss_pred HHHHHHHHHHHhhhhh
Q 008170 559 RVGYVDCSMLIYLLCI 574 (575)
Q Consensus 559 ~~~~~~~~l~~~~~~i 574 (575)
.++.++..+++|..|+
T Consensus 113 ~l~~~~~~~~~~~~A~ 128 (272)
T 3u4t_A 113 QIGSYFYNKGNFPLAI 128 (272)
T ss_dssp HHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHccCHHHHH
Confidence 6777777788887765
No 141
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.22 E-value=3.1e-06 Score=81.60 Aligned_cols=90 Identities=13% Similarity=0.056 Sum_probs=79.6
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL---- 552 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l---- 552 (575)
.+.....+.+.|..++..|+|++|+..|.+++++ +|....++.++|.++..+|++++|+..+++++++
T Consensus 81 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 160 (283)
T 3edt_B 81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR 160 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 4778899999999999999999999999999998 4667889999999999999999999999999998
Q ss_pred ----CcccH---HHHHHHHHHHHHhhhhh
Q 008170 553 ----DKKVR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 553 ----~P~~~---~~~~~~~~~l~~~~~~i 574 (575)
+|... ..++.++..+|++..|+
T Consensus 161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 189 (283)
T 3edt_B 161 LGPDDPNVAKTKNNLASCYLKQGKYQDAE 189 (283)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 66544 46778888888887765
No 142
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.22 E-value=3.4e-06 Score=84.40 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---ccHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK---KVRA 558 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P---~~~~ 558 (575)
|+....+..+|..+++.|+|++|+..|+++++++|++..+++++|.++.++|++++|+..++++++++| ++..
T Consensus 34 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 109 (359)
T 3ieg_A 34 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKE 109 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHH
Confidence 455789999999999999999999999999999999999999999999999999999999999999999 7663
No 143
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.19 E-value=1.4e-05 Score=69.71 Aligned_cols=74 Identities=11% Similarity=0.051 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Q 008170 488 ASELLKEKGNAAFKGK---QWNKAVNYYSEAIKLN-G-TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVG 561 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g---~~~~Ai~~~~~al~~~-p-~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~ 561 (575)
..+..++.|.++.+.+ ++++++..+++.++.+ | +..+++|++|..|+++++|++|+++++++|+++|+|..+..
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4778899999999988 7779999999999998 7 56899999999999999999999999999999999986443
No 144
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.18 E-value=4.3e-06 Score=80.62 Aligned_cols=70 Identities=14% Similarity=0.260 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
....+...|..+++.|+|++|+..|+++++++|++..+++++|...+..+++++|+..++++++++|++.
T Consensus 107 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 176 (272)
T 3u4t_A 107 RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY 176 (272)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccch
Confidence 3445555666666666666666666666666666666666666222233366666666666666666554
No 145
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.17 E-value=6.7e-06 Score=85.64 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
|.....+..+|..+++.|++++|+..|.++++++|++..+++++|.+|.++|++++|+..|+++++++|++.
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 128 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN 128 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence 455889999999999999999999999999999999999999999999999999999999999999999876
No 146
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.14 E-value=8.4e-06 Score=80.19 Aligned_cols=87 Identities=9% Similarity=-0.086 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--H---HHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV--R---ARVG 561 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~--~---~~~~ 561 (575)
+....+...+..+.+++++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|++ . ..++
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~ 262 (287)
T 3qou_A 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ 262 (287)
T ss_dssp SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 3445666677778888888889999999999999999999999999999999999999999999999987 3 4566
Q ss_pred HHHHHHHHhhhh
Q 008170 562 YVDCSMLIYLLC 573 (575)
Q Consensus 562 ~~~~~l~~~~~~ 573 (575)
.++..+|+...+
T Consensus 263 ~~~~~~g~~~~a 274 (287)
T 3qou_A 263 EILAALGTGDAL 274 (287)
T ss_dssp HHHHHHCTTCHH
T ss_pred HHHHHcCCCCcH
Confidence 666666655443
No 147
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.12 E-value=6.7e-06 Score=87.71 Aligned_cols=89 Identities=15% Similarity=0.074 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY 562 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~ 562 (575)
|+....+...|..+++.|+|++|+..|+++++++|++..+++++|.++.++|++++|+..++++++++|++. ..++.
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 386 (537)
T 3fp2_A 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAE 386 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 345678899999999999999999999999999999999999999999999999999999999999999876 45666
Q ss_pred HHHHHHHhhhhh
Q 008170 563 VDCSMLIYLLCI 574 (575)
Q Consensus 563 ~~~~l~~~~~~i 574 (575)
++...++|..|+
T Consensus 387 ~~~~~g~~~~A~ 398 (537)
T 3fp2_A 387 ILTDRGDFDTAI 398 (537)
T ss_dssp HHHHTTCHHHHH
T ss_pred HHHHhCCHHHHH
Confidence 666677776654
No 148
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.10 E-value=5.9e-06 Score=79.56 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=76.5
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISL---- 552 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--------p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l---- 552 (575)
.+.....+...|..++..|+|++|+..|.+++++. |....++.++|.++..+|++++|+..+++++++
T Consensus 39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 118 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118 (283)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999883 556889999999999999999999999999988
Q ss_pred ----CcccH---HHHHHHHHHHHHhhhhh
Q 008170 553 ----DKKVR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 553 ----~P~~~---~~~~~~~~~l~~~~~~i 574 (575)
+|... ..++.++..+++|..|+
T Consensus 119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 147 (283)
T 3edt_B 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVE 147 (283)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35443 45666666667776654
No 149
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.07 E-value=1.2e-05 Score=82.79 Aligned_cols=90 Identities=17% Similarity=0.181 Sum_probs=65.7
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------Cc
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA----TYYSNRAAAYLELGCFQQAEEDCSKTISL------DK 554 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~----~~~~~ra~~~~~l~~~~~Ai~~~~~al~l------~P 554 (575)
++..+..+..+|..+++.|+|++|+..|+++++++|++. .+++++|.+|..+|++++|+..+++++++ +|
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 466777778888888888888888888888888888775 57788888888888888888888888776 33
Q ss_pred ccH---HHHHHHHHHHHHhhhhh
Q 008170 555 KVR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 555 ~~~---~~~~~~~~~l~~~~~~i 574 (575)
... ..++.++..+|+|..|+
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~ 146 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAA 146 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHH
Confidence 322 34555556666665553
No 150
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.05 E-value=1.7e-05 Score=77.98 Aligned_cols=88 Identities=9% Similarity=0.024 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAI---KLNGTSA----TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV-- 556 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al---~~~p~~~----~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~-- 556 (575)
...+..+.+.|..++.+|+|++|+..|++++ +..|++. .+++|+|.+|.++|+|++|+..+++++++.++.
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 3467899999999999999999999999999 4456643 689999999999999999999999999886541
Q ss_pred ----H---HHHHHHHHHHHHhhhh
Q 008170 557 ----R---ARVGYVDCSMLIYLLC 573 (575)
Q Consensus 557 ----~---~~~~~~~~~l~~~~~~ 573 (575)
. ..+|.++..+|++..|
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHH
Confidence 1 4567777777777665
No 151
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.02 E-value=1.7e-05 Score=85.95 Aligned_cols=82 Identities=12% Similarity=0.141 Sum_probs=64.6
Q ss_pred ChhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh
Q 008170 485 SIDASELLKEKGNAAFKGKQ----------WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG--CFQQAEEDCSKTISL 552 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~----------~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~--~~~~Ai~~~~~al~l 552 (575)
+|+....|..++..+.+.++ |+++++.|+++++.+|++..+|++|+.++.+++ +|+++++++++++++
T Consensus 59 nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~ 138 (567)
T 1dce_A 59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA 138 (567)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence 46777888888888887777 888888888888888888888888888888888 668888888888888
Q ss_pred CcccHHHHHHHHHH
Q 008170 553 DKKVRARVGYVDCS 566 (575)
Q Consensus 553 ~P~~~~~~~~~~~~ 566 (575)
||+|..++.+.+..
T Consensus 139 d~~N~~aW~~R~~~ 152 (567)
T 1dce_A 139 DERNFHCWDYRRFV 152 (567)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred ccccccHHHHHHHH
Confidence 88887554444433
No 152
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.01 E-value=1.4e-05 Score=78.18 Aligned_cols=93 Identities=12% Similarity=0.015 Sum_probs=77.9
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553 (575)
Q Consensus 482 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~ 553 (575)
...+|.....+...|..++..|+|++|+..|++++++ +|....+++++|.++..+|++++|+..+++++++.
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999996 56678899999999999999999999999999873
Q ss_pred --------cccH---HHHHHHHHHHHHhhhhh
Q 008170 554 --------KKVR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 554 --------P~~~---~~~~~~~~~l~~~~~~i 574 (575)
|... ..++.++..+++|..|+
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 131 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 131 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHH
Confidence 3333 45566666666666554
No 153
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.00 E-value=2.7e-05 Score=77.17 Aligned_cols=83 Identities=10% Similarity=-0.104 Sum_probs=68.2
Q ss_pred ChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhCcc
Q 008170 485 SIDASELLKEKGNAAFKGK--QWNKAVNYYSEAIKLNGTSATYYSNRAAAY----LEL---GCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g--~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~----~~l---~~~~~Ai~~~~~al~l~P~ 555 (575)
+|+....|..++..+...+ ++++++..++++|+.+|++..+|+.|+.++ .++ +++++++..++++++++|+
T Consensus 63 nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk 142 (306)
T 3dra_A 63 LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK 142 (306)
T ss_dssp CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC
Confidence 4677888888998888888 899999999999999999999999999888 777 7888999999999999998
Q ss_pred cHHHHHHHHHHH
Q 008170 556 VRARVGYVDCSM 567 (575)
Q Consensus 556 ~~~~~~~~~~~l 567 (575)
|+..+.+.+..+
T Consensus 143 ny~aW~~R~~vl 154 (306)
T 3dra_A 143 NHHVWSYRKWLV 154 (306)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 885544444433
No 154
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.00 E-value=8.4e-06 Score=80.96 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P 554 (575)
+..+.+.|..+.+ |+|++|+.+|++++++.+.. ..++.++|.+|.++|+|++|+..|++++++.|
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4455555655555 66666666666666554432 34555666666666666666666666665544
No 155
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.99 E-value=2e-05 Score=68.54 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--H
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV--R 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~--~ 557 (575)
...+..+.+.|..++..|+|++|+..|.+++++.+.. ..+++++|.++..++++++|+..+++++++.++. .
T Consensus 46 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 125 (164)
T 3ro3_A 46 AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 125 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch
Confidence 4456789999999999999999999999999886543 6789999999999999999999999999874322 1
Q ss_pred -------HHHHHHHHHHHHhhhhh
Q 008170 558 -------ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 558 -------~~~~~~~~~l~~~~~~i 574 (575)
..++.++..++++..|+
T Consensus 126 ~~~~~~~~~la~~~~~~g~~~~A~ 149 (164)
T 3ro3_A 126 IGEGRACWSLGNAYTALGNHDQAM 149 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhHHHHHHHHHHHHHHccCHHHHH
Confidence 45666666777776654
No 156
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.97 E-value=1e-05 Score=70.46 Aligned_cols=89 Identities=24% Similarity=0.269 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--H
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV--R 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~--~ 557 (575)
...+..+...|..++..|+|++|+..|.+++++.++. ..++.++|.++..+|++++|+..+++++++.++. .
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 4667889999999999999999999999999986532 3589999999999999999999999999886542 1
Q ss_pred -------HHHHHHHHHHHHhhhhh
Q 008170 558 -------ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 558 -------~~~~~~~~~l~~~~~~i 574 (575)
..++.++..+++|..|+
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~ 109 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAI 109 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 35566666666666554
No 157
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.97 E-value=3e-05 Score=83.89 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYV 563 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~ 563 (575)
...|...|..+.+.|++++|++.|+++++++|++..+|..++.+|.+.|++++|++.++++++++|++...+..+
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 590 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLL 590 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999998644433
No 158
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.95 E-value=2.7e-05 Score=84.33 Aligned_cols=87 Identities=14% Similarity=0.090 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYV 563 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~ 563 (575)
.....+...|..+.+.|++++|++.|+++++++|++...|++++.+|.+.|++++|++.|+++++++|++. ..++.+
T Consensus 371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQ 450 (597)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34556666677777777777777777777777777777777777777777777777777777776666544 334444
Q ss_pred HHHHHHhhhh
Q 008170 564 DCSMLIYLLC 573 (575)
Q Consensus 564 ~~~l~~~~~~ 573 (575)
+...|++..|
T Consensus 451 ~~~~g~~~~A 460 (597)
T 2xpi_A 451 HMQLGNILLA 460 (597)
T ss_dssp HHHHTCHHHH
T ss_pred HHHcCCHHHH
Confidence 4445555444
No 159
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.95 E-value=2.2e-05 Score=77.82 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 506 NKAVNYYSEAIK-LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 506 ~~Ai~~~~~al~-~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
++|+..|++|++ ++|++..+|.+++.++.++|++++|+..|+++++++|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 131 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI 131 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Confidence 455555555555 35555555555555555555555555555555555444
No 160
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.95 E-value=3.9e-05 Score=81.27 Aligned_cols=92 Identities=8% Similarity=0.034 Sum_probs=76.5
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 008170 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-----NGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL- 552 (575)
Q Consensus 482 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l- 552 (575)
.+.+|..+..+.+.|..|..+|+|++|+..|.++|++ .|++ +..++|+|.+|..+|+|++|+..|++|+++
T Consensus 344 g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 344 ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL 423 (490)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999976 3444 677999999999999999999999999965
Q ss_pred ----CcccH------HHHHHHHHHHHHhhhh
Q 008170 553 ----DKKVR------ARVGYVDCSMLIYLLC 573 (575)
Q Consensus 553 ----~P~~~------~~~~~~~~~l~~~~~~ 573 (575)
-|+++ ..+..++..++.|..+
T Consensus 424 ~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~a 454 (490)
T 3n71_A 424 LVTHGPSHPITKDLEAMRMQTEMELRMFRQN 454 (490)
T ss_dssp HHHTCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666 3455666666666554
No 161
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.95 E-value=2.4e-05 Score=71.60 Aligned_cols=88 Identities=10% Similarity=-0.097 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL---DKKVR 557 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l---~P~~~ 557 (575)
..+..+...|..++..|+|++|+..|.+++++ .+....+++++|.++..+|++++|+..+++++++ .+++.
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 56889999999999999999999999999994 4455788999999999999999999999999988 33222
Q ss_pred -------HHHHHHHHHHHHhhhhh
Q 008170 558 -------ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 558 -------~~~~~~~~~l~~~~~~i 574 (575)
..++.++..+|+|..|+
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~ 127 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGAR 127 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHH
Confidence 45677777777776664
No 162
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.94 E-value=2e-05 Score=77.16 Aligned_cols=90 Identities=12% Similarity=0.079 Sum_probs=78.3
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISL---- 552 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--------p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l---- 552 (575)
.+.....+...|..++..|+|++|+..|.+++++. |....++.++|.++..+|++++|+..+++++++
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999884 556788999999999999999999999999998
Q ss_pred ----CcccH---HHHHHHHHHHHHhhhhh
Q 008170 553 ----DKKVR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 553 ----~P~~~---~~~~~~~~~l~~~~~~i 574 (575)
+|... ..++.++..+|+|..|+
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 215 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAE 215 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 55544 46777778888887765
No 163
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.93 E-value=1.5e-05 Score=83.59 Aligned_cols=67 Identities=15% Similarity=0.090 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKL---------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~---------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P 554 (575)
.+..|..+|.+++.+|+|++|+++|++|+++ +|.....|.|+|.+|..+|++++|+.++++++++.+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 3667888999999999999999999999987 677889999999999999999999999999998854
No 164
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.93 E-value=1.5e-05 Score=78.44 Aligned_cols=89 Identities=10% Similarity=0.009 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV-- 556 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-------p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~-- 556 (575)
...+..+.+.|..++..|+|++|+.+|.++++.. +....+++|+|.+|.++|+|++|+..+++++++.++.
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~ 231 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc
Confidence 3567789999999999999999999999999532 2235689999999999999999999999999987643
Q ss_pred -------HHHHHHHHHHHH-Hhhhhh
Q 008170 557 -------RARVGYVDCSML-IYLLCI 574 (575)
Q Consensus 557 -------~~~~~~~~~~l~-~~~~~i 574 (575)
...+|.++..+| +|..|+
T Consensus 232 ~~~~~~~~~~lg~~~~~~g~~~~~A~ 257 (293)
T 3u3w_A 232 MALIGQLYYQRGECLRKLEYEEAEIE 257 (293)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 145666666666 345543
No 165
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.93 E-value=3.2e-05 Score=74.84 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccH-
Q 008170 487 DASELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDKKVR- 557 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~----l~~~~~Ai~~~~~al~l~P~~~- 557 (575)
.....+.+.|..+.+ .+++++|+..|+++++++ ++.+++++|.+|.. .+++++|+..++++++++ +.
T Consensus 36 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~ 111 (273)
T 1ouv_A 36 KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAE 111 (273)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--Ccc
Confidence 345667777888887 888888888888887774 67778888888888 788888888888887764 33
Q ss_pred --HHHHHHHHH----HHHhhhhh
Q 008170 558 --ARVGYVDCS----MLIYLLCI 574 (575)
Q Consensus 558 --~~~~~~~~~----l~~~~~~i 574 (575)
..++.++.. .+++..|+
T Consensus 112 a~~~lg~~~~~~~~~~~~~~~A~ 134 (273)
T 1ouv_A 112 GCASLGGIYHDGKVVTRDFKKAV 134 (273)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHH
Confidence 345555554 55555443
No 166
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.88 E-value=4.7e-05 Score=74.95 Aligned_cols=64 Identities=20% Similarity=0.315 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
...+...|..+++.|+|++|+..|+++++++|++ ..++.++|.++..+|++++|+..+++++++
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 72 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 72 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555 244555555555555555555555555544
No 167
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.87 E-value=1.8e-05 Score=80.94 Aligned_cols=89 Identities=19% Similarity=0.208 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT-------SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR- 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-------~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~- 557 (575)
+..+..+.+.|..++..|++++|+..|.+|+++.+. .+.+++++|.+|..+|++++|+..+++++++.++..
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 219 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 456778888888888888888888888888877432 355788888888888888888888888887754321
Q ss_pred --------HHHHHHHHHHHHhhhhh
Q 008170 558 --------ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 558 --------~~~~~~~~~l~~~~~~i 574 (575)
..+|.++..+++|..|+
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~ 244 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAI 244 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 45666666666666654
No 168
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.87 E-value=1.8e-05 Score=64.17 Aligned_cols=57 Identities=11% Similarity=-0.119 Sum_probs=48.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170 518 LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 518 ~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~~~i 574 (575)
.+|+++.+++++|.+|+++|++++|+..|+++++++|++. ..+|.++..+++|..|+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 61 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 4799999999999999999999999999999999999877 46777777778877765
No 169
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.86 E-value=3.4e-05 Score=78.87 Aligned_cols=89 Identities=9% Similarity=0.009 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C-
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISL-----D- 553 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l-----~- 553 (575)
+..+..+.+.|..+...|+|++|+..|.+++++.++. ..+++++|.+|..+|++++|+..+++++++ +
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 5667788888888888888888888888888775432 357888888888888888888888888883 4
Q ss_pred cccH---HHHHHHHHHHHHhhhhh
Q 008170 554 KKVR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 554 P~~~---~~~~~~~~~l~~~~~~i 574 (575)
|... ..+|.++..+|++..|+
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~ 284 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAH 284 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHH
Confidence 4443 45666666666666554
No 170
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.86 E-value=2.9e-05 Score=70.98 Aligned_cols=90 Identities=14% Similarity=0.158 Sum_probs=72.7
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL---NGT----SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK-- 555 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~---~p~----~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~-- 555 (575)
.+..+..+.+.|..+...|+|++|+..|.+++++ .++ ...+++++|.++..+|++++|+..+++++++.+.
T Consensus 62 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 141 (203)
T 3gw4_A 62 HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 3677889999999999999999999999999998 443 3567999999999999999999999999976432
Q ss_pred cH-------HHHHHHHHHHHHhhhhh
Q 008170 556 VR-------ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 556 ~~-------~~~~~~~~~l~~~~~~i 574 (575)
+. ..++.++...|++..|+
T Consensus 142 ~~~~~~~~~~~la~~~~~~g~~~~A~ 167 (203)
T 3gw4_A 142 DQVAIACAFRGLGDLAQQEKNLLEAQ 167 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 22 35566666666666554
No 171
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.85 E-value=4.7e-05 Score=82.40 Aligned_cols=80 Identities=5% Similarity=0.003 Sum_probs=73.1
Q ss_pred ChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccHHHHH
Q 008170 485 SIDASELLKEKGNAAFKGK--QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-CFQQAEEDCSKTISLDKKVRARVG 561 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g--~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~-~~~~Ai~~~~~al~l~P~~~~~~~ 561 (575)
+|+...+|..++..+.+.+ +|+++++.++++++++|++..+|++|+.+..+++ .+++++++++++|+++|+|..++.
T Consensus 103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~ 182 (567)
T 1dce_A 103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 182 (567)
T ss_dssp CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHH
Confidence 4788999999999999999 7799999999999999999999999999999999 999999999999999999985444
Q ss_pred HHH
Q 008170 562 YVD 564 (575)
Q Consensus 562 ~~~ 564 (575)
+.+
T Consensus 183 ~r~ 185 (567)
T 1dce_A 183 YRS 185 (567)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 172
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.85 E-value=3.3e-05 Score=76.56 Aligned_cols=71 Identities=8% Similarity=0.011 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT-YYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~-~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
+....|.+.|..+.+.|++++|...|+++++++|+++. +|.+++.++.++|++++|+..|+++++++|.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 168 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH 168 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH
Confidence 34556666666666666666666666666666666654 666666666666666666666666666665543
No 173
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.85 E-value=6.6e-05 Score=75.36 Aligned_cols=87 Identities=8% Similarity=-0.099 Sum_probs=75.9
Q ss_pred ChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhCcccHHHHH
Q 008170 485 SIDASELLKEKGNAAFKGK-QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL-G-CFQQAEEDCSKTISLDKKVRARVG 561 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g-~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l-~-~~~~Ai~~~~~al~l~P~~~~~~~ 561 (575)
+|+....|..++..+...+ ++++++..++++|+.+|++..+|+.|+.++.++ + +++++++.++++++++|+|..++.
T Consensus 84 nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~ 163 (349)
T 3q7a_A 84 NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWA 163 (349)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHH
Confidence 4778899999999999999 599999999999999999999999999999998 8 999999999999999999995444
Q ss_pred ---HHHHHHHHhh
Q 008170 562 ---YVDCSMLIYL 571 (575)
Q Consensus 562 ---~~~~~l~~~~ 571 (575)
.+...++.+.
T Consensus 164 ~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 164 YLHWLYSHFSTLG 176 (349)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHhcccc
Confidence 4444444443
No 174
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.83 E-value=4.4e-05 Score=77.83 Aligned_cols=65 Identities=20% Similarity=0.316 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
.+..+..+|..+++.|+|++|+..|+++++++|++ ..+++++|.++..+|++++|+..+++++++
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 76 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 76 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 35556666666666666666666666666666665 345666666666666666666666666655
No 175
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.82 E-value=1.8e-05 Score=83.62 Aligned_cols=87 Identities=13% Similarity=0.064 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD 564 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~ 564 (575)
....+...|..+++.|++++|+..|+++++++|++..++.+++.++.++|++++|+..++++++++|++. ..++.++
T Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 382 (514)
T 2gw1_A 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEIL 382 (514)
T ss_dssp CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHH
Confidence 3456677777777777777777777777777777777777777777777777777777777777776655 3445555
Q ss_pred HHHHHhhhhh
Q 008170 565 CSMLIYLLCI 574 (575)
Q Consensus 565 ~~l~~~~~~i 574 (575)
...++|..|+
T Consensus 383 ~~~~~~~~A~ 392 (514)
T 2gw1_A 383 TDKNDFDKAL 392 (514)
T ss_dssp HHTTCHHHHH
T ss_pred HHCCCHHHHH
Confidence 5555555443
No 176
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.78 E-value=0.00011 Score=72.05 Aligned_cols=88 Identities=8% Similarity=-0.059 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcccH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTI---SLDKKVR 557 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~~~~Ai~~~~~al---~l~P~~~ 557 (575)
.....+...|..+...|+|++|+..|.+++++.+.. ..+++++|.+|..+|+|++|+..+++++ +..|++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~ 192 (293)
T 2qfc_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc
Confidence 345556778999999999999999999999876544 6799999999999999999999999999 4455432
Q ss_pred -------HHHHHHHHHHHHhhhhh
Q 008170 558 -------ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 558 -------~~~~~~~~~l~~~~~~i 574 (575)
..+|.++..+++|..|+
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~Al 216 (293)
T 2qfc_A 193 EFDVKVRYNHAKALYLDSRYEESL 216 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHhHHHHHHHHhhHHHHH
Confidence 46777777778887775
No 177
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.77 E-value=0.00019 Score=71.60 Aligned_cols=81 Identities=6% Similarity=0.048 Sum_probs=72.8
Q ss_pred ChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcccHHHHH
Q 008170 485 SIDASELLKEKGNAAFKGK--QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-FQQAEEDCSKTISLDKKVRARVG 561 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g--~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~-~~~Ai~~~~~al~l~P~~~~~~~ 561 (575)
+|+....|..++..+.+.+ +|++++.+++++++++|.+..+|++|+.+...+++ +++++++++++|+.+|.|..++.
T Consensus 104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~ 183 (331)
T 3dss_A 104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 183 (331)
T ss_dssp CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 4778999999999999988 49999999999999999999999999999999999 69999999999999999985444
Q ss_pred HHHH
Q 008170 562 YVDC 565 (575)
Q Consensus 562 ~~~~ 565 (575)
+.+.
T Consensus 184 ~R~~ 187 (331)
T 3dss_A 184 YRSC 187 (331)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 178
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.76 E-value=2.7e-05 Score=77.27 Aligned_cols=88 Identities=9% Similarity=-0.005 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT------SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV--- 556 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~--- 556 (575)
...+..+.+.|+.+.+.|+|++|+.+|++++++.+. .+.++.++|.+|.. +++++|+..|++++++.++.
T Consensus 73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~ 151 (307)
T 2ifu_A 73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL 151 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence 456788999999999999999999999999998543 25789999999999 99999999999999997753
Q ss_pred ------HHHHHHHHHHHHHhhhhh
Q 008170 557 ------RARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 557 ------~~~~~~~~~~l~~~~~~i 574 (575)
...++.++..+|+|..|+
T Consensus 152 ~~~~~~~~~lg~~~~~~g~~~~A~ 175 (307)
T 2ifu_A 152 RQAAELIGKASRLLVRQQKFDEAA 175 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHH
Confidence 145677777778887765
No 179
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.75 E-value=5.4e-06 Score=67.88 Aligned_cols=64 Identities=13% Similarity=0.106 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~~~~Ai~~~~~a 549 (575)
|.....+.++|.++++.|+|++|+..|+++++++|++ ..++++++.++..+|++++|+..+++.
T Consensus 35 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 35 PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 4457889999999999999999999999999999999 999999999999999999888776643
No 180
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.74 E-value=6.2e-05 Score=78.37 Aligned_cols=76 Identities=17% Similarity=0.236 Sum_probs=67.2
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 008170 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-----NGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL- 552 (575)
Q Consensus 482 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l- 552 (575)
.+.+|..+..+.+.|..|..+|+|++|+..|+++|++ .|++ +..++|+|.+|..+|+|++|+..|++|+++
T Consensus 333 g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 333 EDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999976 3444 667999999999999999999999999976
Q ss_pred ----CcccH
Q 008170 553 ----DKKVR 557 (575)
Q Consensus 553 ----~P~~~ 557 (575)
-|+++
T Consensus 413 ~~~lG~~Hp 421 (433)
T 3qww_A 413 EVAHGKDHP 421 (433)
T ss_dssp HHHTCTTCH
T ss_pred HHHcCCCCh
Confidence 46666
No 181
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.74 E-value=3.7e-05 Score=78.96 Aligned_cols=83 Identities=23% Similarity=0.257 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------c
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD------K 554 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~------P 554 (575)
..+..+...|..++..|+|++|+..|++++++ .|....+++++|.+|..+|++++|+..+++++++. +
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 163 (411)
T 4a1s_A 84 TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL 163 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchH
Confidence 34678999999999999999999999999998 57778999999999999999999999999999883 3
Q ss_pred ccH---HHHHHHHHHHHH
Q 008170 555 KVR---ARVGYVDCSMLI 569 (575)
Q Consensus 555 ~~~---~~~~~~~~~l~~ 569 (575)
... ..++.++..+++
T Consensus 164 ~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 164 SEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCc
Confidence 322 467777788888
No 182
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.72 E-value=0.00013 Score=72.83 Aligned_cols=83 Identities=12% Similarity=0.131 Sum_probs=72.9
Q ss_pred ChhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHh
Q 008170 485 SIDASELLKEKGNAAFKGKQ----------WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC--FQQAEEDCSKTISL 552 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~----------~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~--~~~Ai~~~~~al~l 552 (575)
+|+....|..++..+...++ +++++.+++++++.+|++..+|++|+.++.++++ +++++..+++++++
T Consensus 60 nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~ 139 (331)
T 3dss_A 60 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA 139 (331)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh
Confidence 57788999999998877665 7999999999999999999999999999999995 99999999999999
Q ss_pred CcccHHHHHHHHHHH
Q 008170 553 DKKVRARVGYVDCSM 567 (575)
Q Consensus 553 ~P~~~~~~~~~~~~l 567 (575)
+|+|..++.+.+..+
T Consensus 140 dprNy~AW~~R~~vl 154 (331)
T 3dss_A 140 DERNFHCWDYRRFVA 154 (331)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999996555554444
No 183
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.70 E-value=8.5e-05 Score=75.76 Aligned_cols=89 Identities=19% Similarity=0.077 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCc
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT------SATYYSNRAAAYLELGCFQQAEEDCSKTIS-----LDK 554 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~-----l~P 554 (575)
+..+..+.+.|..+...|+|++|++.|.+++++.+. ...+++++|.+|..+|++++|+..++++++ .+|
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 356778888888888888888888888888876431 256788888888888888888888888888 556
Q ss_pred ccH---HHHHHHHHHHHHhhhhh
Q 008170 555 KVR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 555 ~~~---~~~~~~~~~l~~~~~~i 574 (575)
... ..+|.++..+|++..|+
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~ 281 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAF 281 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHH
Confidence 544 35566666666666554
No 184
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.70 E-value=7.1e-05 Score=78.45 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYL 534 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~ 534 (575)
|.....+.+.|..+.+.|++++|+..|.++++.+|+++.+++++|.+|.
T Consensus 244 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 244 PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR 292 (472)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 4556778889999999999999999999999999988887777766653
No 185
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.69 E-value=1.8e-05 Score=63.57 Aligned_cols=64 Identities=23% Similarity=0.191 Sum_probs=56.6
Q ss_pred hhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASE-LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~-~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
|+... .+..+|..+++.|+|++|+..|+++++++|++..++++ +.+.+++..|+++++++|++.
T Consensus 31 p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 31 PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 44567 89999999999999999999999999999999988865 577899999999999988753
No 186
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.68 E-value=0.00014 Score=72.08 Aligned_cols=83 Identities=8% Similarity=-0.009 Sum_probs=74.5
Q ss_pred ChhHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCccc
Q 008170 485 SIDASELLKEKGNAAFKGKQWN--KAVNYYSEAIKLNGTSATYYSNRAAAYLELGC------FQQAEEDCSKTISLDKKV 556 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~--~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~------~~~Ai~~~~~al~l~P~~ 556 (575)
+|+....|..++.++.+.++++ ++++.++++|+.+|.+..+|++|+.++.++++ ++++++.++++|+++|+|
T Consensus 140 ~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n 219 (306)
T 3dra_A 140 DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN 219 (306)
T ss_dssp CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC
Confidence 3677999999999999999999 99999999999999999999999999999988 999999999999999999
Q ss_pred HHHHHHHHHHH
Q 008170 557 RARVGYVDCSM 567 (575)
Q Consensus 557 ~~~~~~~~~~l 567 (575)
..++.+....+
T Consensus 220 ~SaW~y~~~ll 230 (306)
T 3dra_A 220 PSTWNYLLGIH 230 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred ccHHHHHHHHH
Confidence 96554444433
No 187
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.64 E-value=0.0001 Score=72.29 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=62.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGC-FQQAEEDCSKTISLD 553 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~-~~~Ai~~~~~al~l~ 553 (575)
.+..+..+.+.|..++++|+|++|+..|++++++.++. +.+|+++|.+|.++|+ +++|+..|++++++.
T Consensus 192 ~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999987544 8899999999999995 799999999999763
No 188
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.64 E-value=0.00017 Score=69.56 Aligned_cols=85 Identities=22% Similarity=0.187 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccH-H
Q 008170 488 ASELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDKKVR-A 558 (575)
Q Consensus 488 ~a~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~----l~~~~~Ai~~~~~al~l~P~~~-~ 558 (575)
....+.+.|..+++ .+++++|+..|+++++. +++.+++++|.+|.+ .+++++|+..+++++++++... .
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~ 150 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCT 150 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHH
Confidence 46678889999999 99999999999999988 489999999999999 9999999999999999874332 4
Q ss_pred HHHHHHHH----HHHhhhhh
Q 008170 559 RVGYVDCS----MLIYLLCI 574 (575)
Q Consensus 559 ~~~~~~~~----l~~~~~~i 574 (575)
.++.++.. .+++..|+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~ 170 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKAL 170 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHH
Confidence 55555555 55565554
No 189
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.62 E-value=9.2e-05 Score=75.53 Aligned_cols=90 Identities=11% Similarity=0.054 Sum_probs=76.1
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT-------SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK-- 555 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-------~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~-- 555 (575)
.+..+..+.+.|..++..|++++|+..|.+++++.+. .+.+++++|.+|..+|++++|++.+++++++.++
T Consensus 137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 216 (378)
T 3q15_A 137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ 216 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 3678999999999999999999999999999987543 2568999999999999999999999999987432
Q ss_pred cH-------HHHHHHHHHHHHhhhhh
Q 008170 556 VR-------ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 556 ~~-------~~~~~~~~~l~~~~~~i 574 (575)
+. ..+|.++..+++|..|+
T Consensus 217 ~~~~~~~~~~~lg~~y~~~~~~~~A~ 242 (378)
T 3q15_A 217 NDRFIAISLLNIANSYDRSGDDQMAV 242 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 11 46777888888887775
No 190
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.60 E-value=0.00015 Score=73.88 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV---- 556 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~---- 556 (575)
..+..+...|..++..|+|++|+..|++++++ .|....++.++|.++..+|++++|+..+++++++.|+.
T Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 124 (406)
T 3sf4_A 45 TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV 124 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc
Confidence 34788999999999999999999999999988 34557899999999999999999999999999987753
Q ss_pred -----HHHHHHHHHHHHH
Q 008170 557 -----RARVGYVDCSMLI 569 (575)
Q Consensus 557 -----~~~~~~~~~~l~~ 569 (575)
...++.++...++
T Consensus 125 ~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 125 GEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCC
Confidence 1467777777888
No 191
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.59 E-value=5.7e-05 Score=74.28 Aligned_cols=83 Identities=22% Similarity=0.285 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR--- 557 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~--- 557 (575)
.....+...|..++..|+|++|+..|++++++ .+....++.++|.++..+|++++|+..+++++++.++..
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 120 (338)
T 3ro2_A 41 TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV 120 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch
Confidence 44788999999999999999999999999988 445578999999999999999999999999998866431
Q ss_pred ------HHHHHHHHHHHH
Q 008170 558 ------ARVGYVDCSMLI 569 (575)
Q Consensus 558 ------~~~~~~~~~l~~ 569 (575)
..++.++..+++
T Consensus 121 ~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 121 GEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCc
Confidence 456777777777
No 192
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.58 E-value=0.00025 Score=68.87 Aligned_cols=66 Identities=15% Similarity=-0.091 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--GT-SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--p~-~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
..++.+|..+.+.|++++|+..|++++.-. |. ...+++++|.|+.++|+.++|...|++++..+|+
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 455566666666666666666666666433 33 3446666666666666666666666666666665
No 193
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.58 E-value=0.00031 Score=73.14 Aligned_cols=76 Identities=14% Similarity=0.143 Sum_probs=67.3
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 008170 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-----NGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL- 552 (575)
Q Consensus 482 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l- 552 (575)
.+.++..+..+.+.|..|..+|+|++|+..|.++|++ .|++ +..++|+|.+|..+|++++|+..+++|+++
T Consensus 322 g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 322 PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999999976 2444 567999999999999999999999999966
Q ss_pred ----CcccH
Q 008170 553 ----DKKVR 557 (575)
Q Consensus 553 ----~P~~~ 557 (575)
-|+++
T Consensus 402 ~~~lG~~Hp 410 (429)
T 3qwp_A 402 RVTHGREHS 410 (429)
T ss_dssp HHHTCTTSH
T ss_pred HHhcCCCCh
Confidence 56666
No 194
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.56 E-value=0.00031 Score=68.21 Aligned_cols=118 Identities=11% Similarity=-0.014 Sum_probs=85.3
Q ss_pred chhHHhHHHHHHHH-hhhhhhhccCCCCCCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHH
Q 008170 452 DKFLLDTVLDLYDS-LQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS--ATYYSN 528 (575)
Q Consensus 452 d~~ll~~a~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~--~~~~~~ 528 (575)
+..-+..+..+... -.+++......... ..|.+. .++.+|..+++.++|++|+..|+++++..+.. ..++++
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~----~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~ 176 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPV----AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA 176 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCC----TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence 34444555444443 22334333333322 346777 88999999999999999999999998764332 468999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--cc-cH---HHHHHHHHHHHHhhhhh
Q 008170 529 RAAAYLELGCFQQAEEDCSKTISLD--KK-VR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 529 ra~~~~~l~~~~~Ai~~~~~al~l~--P~-~~---~~~~~~~~~l~~~~~~i 574 (575)
+|.++..+|++++|++.|++++.-. |. .. ..++.++..+|+...|.
T Consensus 177 LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~ 228 (282)
T 4f3v_A 177 HGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAV 228 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999998654 54 22 56788888888877664
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.55 E-value=0.0002 Score=75.84 Aligned_cols=86 Identities=14% Similarity=0.085 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Ccc
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-----GTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL-----DKK 555 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-----p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l-----~P~ 555 (575)
+....+++..+..+|+|++|+..|.+++++. |++ +..++|+|.+|..+|+|++|+..++++|++ -|+
T Consensus 309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 388 (490)
T 3n71_A 309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN 388 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 4445667777889999999999999999862 444 678999999999999999999999999966 455
Q ss_pred cH------HHHHHHHHHHHHhhhhh
Q 008170 556 VR------ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 556 ~~------~~~~~~~~~l~~~~~~i 574 (575)
++ .++|.++..+|+|..|+
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~ 413 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGH 413 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 55 57888888888887764
No 196
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.49 E-value=0.00076 Score=67.66 Aligned_cols=80 Identities=10% Similarity=-0.013 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-CFQQAEEDCSKTISLDKKVRARVGYVDCSM 567 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~-~~~~Ai~~~~~al~l~P~~~~~~~~~~~~l 567 (575)
...+........+.+..++|++.++++|+++|++..+|+.|+.++..++ .+++++..++++|+.+|+++..+......+
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL 133 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3333333344444555679999999999999999999999999999999 599999999999999999996554444444
Q ss_pred H
Q 008170 568 L 568 (575)
Q Consensus 568 ~ 568 (575)
.
T Consensus 134 ~ 134 (349)
T 3q7a_A 134 D 134 (349)
T ss_dssp H
T ss_pred H
Confidence 3
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.46 E-value=0.0003 Score=54.80 Aligned_cols=52 Identities=27% Similarity=0.416 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~ 537 (575)
|.....+.+.|..+++.|++++|+..|+++++++|++..++.+++.++.++|
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 40 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 3457789999999999999999999999999999999999999999998764
No 198
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.42 E-value=0.0005 Score=73.58 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170 487 DASELLKEKGNAAFK-------GKQWN-------KAVNYYSEAIK-LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~-------~g~~~-------~Ai~~~~~al~-~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~ 551 (575)
.....|.+.|..+.+ .|+++ +|+..|++|++ ++|++..+|++++..+.++|++++|...|+++++
T Consensus 270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~ 349 (530)
T 2ooe_A 270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 349 (530)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence 345566666666654 56655 66666666665 5666666666666666666666666666666666
Q ss_pred hCccc
Q 008170 552 LDKKV 556 (575)
Q Consensus 552 l~P~~ 556 (575)
++|++
T Consensus 350 ~~p~~ 354 (530)
T 2ooe_A 350 IEDID 354 (530)
T ss_dssp SSSSC
T ss_pred ccccC
Confidence 66654
No 199
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.37 E-value=0.00039 Score=72.29 Aligned_cols=82 Identities=10% Similarity=-0.078 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccH--
Q 008170 493 KEKGNAAFKGKQWNKAVNYYSEAIKL-----NGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL-----DKKVR-- 557 (575)
Q Consensus 493 ~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l-----~P~~~-- 557 (575)
.+......+.|+|++|+..|.+++++ .|++ +..+.|+|.+|..+|+|++|+..++++|++ -|+++
T Consensus 302 le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 381 (433)
T 3qww_A 302 IEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNV 381 (433)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 34455555678999999999999986 3555 567999999999999999999999999966 35555
Q ss_pred ----HHHHHHHHHHHHhhhhh
Q 008170 558 ----ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 558 ----~~~~~~~~~l~~~~~~i 574 (575)
.++|.++..+|+|..|+
T Consensus 382 a~~l~nLa~~~~~qg~~~eA~ 402 (433)
T 3qww_A 382 ASMWLKLGRLYMGLENKAAGE 402 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHH
Confidence 57888888888888765
No 200
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.34 E-value=0.00072 Score=68.39 Aligned_cols=87 Identities=14% Similarity=-0.054 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV-- 556 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--------p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~-- 556 (575)
.....+.+.|..++.+|+|++|+..|++++++. |....++.++|.++..+|++++|+..+++++++.++.
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 345567778888888888888888888888764 2345667778888888888888888888888776642
Q ss_pred ------HHHHHHHHHHHHHhhhh
Q 008170 557 ------RARVGYVDCSMLIYLLC 573 (575)
Q Consensus 557 ------~~~~~~~~~~l~~~~~~ 573 (575)
...++.++...|++..|
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A 193 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNA 193 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHH
Confidence 13455556666666554
No 201
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.29 E-value=0.00055 Score=63.69 Aligned_cols=65 Identities=11% Similarity=-0.046 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 008170 488 ASELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNG--TSATYYSNRAAAYLE----LGCFQQAEEDCSKTISL 552 (575)
Q Consensus 488 ~a~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p--~~~~~~~~ra~~~~~----l~~~~~Ai~~~~~al~l 552 (575)
++..+.+.|..++. .+++++|+..|+++++..+ +++.+++++|.+|.. .+++++|+..|++++++
T Consensus 84 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 84 SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 35567777777776 7777888888887777766 347777777877777 77778888888887777
No 202
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.19 E-value=0.001 Score=66.76 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
+..+..+...+..++.+|++++|+..+++|++++| +...|..+|.++...|++++|++.|++|+.++|...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 45677888889889889999999999999999996 478889999999999999999999999999999764
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.17 E-value=0.00091 Score=69.56 Aligned_cols=88 Identities=11% Similarity=0.100 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-----NGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL-----D 553 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l-----~ 553 (575)
...+...+....+.++|+|++|+..|++++++ .|++ +..+.|++.+|..+|+|++|+..++++|++ -
T Consensus 285 ~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg 364 (429)
T 3qwp_A 285 KEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP 364 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC
Confidence 34556667777888999999999999999976 3444 678999999999999999999999999966 3
Q ss_pred cccH------HHHHHHHHHHHHhhhhh
Q 008170 554 KKVR------ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 554 P~~~------~~~~~~~~~l~~~~~~i 574 (575)
|+++ ..+|.++...|+|..|+
T Consensus 365 ~~Hp~~a~~l~nLa~~~~~~g~~~eA~ 391 (429)
T 3qwp_A 365 GSHPVRGVQVMKVGKLQLHQGMFPQAM 391 (429)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5555 57788888888887764
No 204
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.14 E-value=0.00056 Score=63.63 Aligned_cols=63 Identities=10% Similarity=-0.001 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCc
Q 008170 489 SELLKEKGNAAFKGK----QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDK 554 (575)
Q Consensus 489 a~~~~~~g~~~~~~g----~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~----l~~~~~Ai~~~~~al~l~P 554 (575)
+..+.+.|..+.+ + ++++|+..|+++++ +.++.+++++|.+|.. .+++++|+..|+++++..+
T Consensus 50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 120 (212)
T 3rjv_A 50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE 120 (212)
T ss_dssp HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence 4455556666555 4 66666666666643 3466666666666665 5666666666666666655
No 205
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.12 E-value=0.0022 Score=53.79 Aligned_cols=73 Identities=8% Similarity=0.014 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNK---AVNYYSEAIKLN-G-TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVG 561 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~---Ai~~~~~al~~~-p-~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~ 561 (575)
.+.-++.+..+.+..+..+ +|..+...++.+ | ..-.++|.+|..++++|+|++|...++.+|+.+|+|..+..
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5677889999999888776 999999988877 5 46789999999999999999999999999999999986433
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.00 E-value=0.0035 Score=53.80 Aligned_cols=65 Identities=20% Similarity=0.100 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCc
Q 008170 488 ASELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDK 554 (575)
Q Consensus 488 ~a~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~----l~~~~~Ai~~~~~al~l~P 554 (575)
++..+.+.|..|++ .+++++|+..|+++.+. .++.+++++|.+|.. .+++++|+..|+++.+...
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 46788999999999 99999999999999987 689999999999999 8999999999999998843
No 207
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.91 E-value=0.012 Score=50.18 Aligned_cols=72 Identities=8% Similarity=0.016 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Q 008170 489 SELLKEKGNAAFKGKQW---NKAVNYYSEAIKLNGT-SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARV 560 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~---~~Ai~~~~~al~~~p~-~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~ 560 (575)
.+.-++.+..+.+..+- .++|..++..++.+|. .-..+|.+|..++++++|++|.++++.+|+.+|+|..+.
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 56778888899887765 4789999999998884 577999999999999999999999999999999998643
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.90 E-value=0.0014 Score=65.77 Aligned_cols=87 Identities=13% Similarity=-0.026 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-------------------------------
Q 008170 488 ASELLKEKGNAAFKGKQ---WNKAVNYYSEAIKLNGTSATYYSNRAAAY------------------------------- 533 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~---~~~Ai~~~~~al~~~p~~~~~~~~ra~~~------------------------------- 533 (575)
.+-.++-+|..++..++ +.+|+.+|++|++++|+++.+|..++.||
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~ 274 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN 274 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence 45566668888877554 58999999999999999988877655544
Q ss_pred -------------HHcCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHhhhhh
Q 008170 534 -------------LELGCFQQAEEDCSKTISLDKKVR--ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 534 -------------~~l~~~~~Ai~~~~~al~l~P~~~--~~~~~~~~~l~~~~~~i 574 (575)
...|++++|+..+++++.++|++. ..+|.++...|++..|+
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~ 330 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAA 330 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 336999999999999999998644 35566777777776664
No 209
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.85 E-value=0.0032 Score=63.48 Aligned_cols=69 Identities=10% Similarity=0.051 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV 556 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~ 556 (575)
....+...|..++..|+|++|+..|.+++++.+.. ..+++++|.++..+|++++|+..+++++++.+..
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 126 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 126 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 34455666666666667777766666666654432 2335666666666677777777777666665544
No 210
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.85 E-value=0.012 Score=49.48 Aligned_cols=72 Identities=8% Similarity=0.016 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Q 008170 489 SELLKEKGNAAFKGKQW---NKAVNYYSEAIKLNGT-SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARV 560 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~---~~Ai~~~~~al~~~p~-~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~ 560 (575)
.+.-++.+..+.+..+- .++|..++..++.+|. .-..++.+|..++++|+|++|.++++.+|+.+|+|..+.
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 56778888888887765 4789999999998884 478999999999999999999999999999999998643
No 211
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=96.80 E-value=0.0046 Score=65.98 Aligned_cols=70 Identities=9% Similarity=0.024 Sum_probs=65.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
+|.+...|...+. +.++|++++|...|+++++..|++..+|...+..+.+.+++++|+..|+++++..|+
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~ 78 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH 78 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence 3667888998888 488999999999999999999999999999999999999999999999999999995
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.76 E-value=0.0024 Score=50.81 Aligned_cols=56 Identities=14% Similarity=0.084 Sum_probs=48.7
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCcccHH---HHHHHHHHHHHhhhhh
Q 008170 519 NGTSATYYSNRAAAYLELGC---FQQAEEDCSKTISLDKKVRA---RVGYVDCSMLIYLLCI 574 (575)
Q Consensus 519 ~p~~~~~~~~ra~~~~~l~~---~~~Ai~~~~~al~l~P~~~~---~~~~~~~~l~~~~~~i 574 (575)
+|+++.++..+|.+++..++ .++|...++++|++||++.. .+|......|+|..||
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai 63 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAI 63 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 68999999999999987766 79999999999999999994 5666777778888876
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.69 E-value=0.0097 Score=57.38 Aligned_cols=70 Identities=10% Similarity=0.030 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccc
Q 008170 487 DASELLKEKGNAAFKG-----KQWNKAVNYYSEAIKLNGTS-ATYYSNRAAAYLE-LGCFQQAEEDCSKTISLDKKV 556 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~-----g~~~~Ai~~~~~al~~~p~~-~~~~~~ra~~~~~-l~~~~~Ai~~~~~al~l~P~~ 556 (575)
.+...|.-.|..|.+. |+.++|.++|++||+++|+. ...++..|..+.. ++++++|.+.++++++.+|..
T Consensus 197 ~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 197 QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 3667899999999995 99999999999999999975 9999999999988 499999999999999998873
No 214
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.55 E-value=0.0086 Score=52.47 Aligned_cols=64 Identities=19% Similarity=0.163 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C----------------------CHHHHHHHHHHHHHcCCHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG---T----------------------SATYYSNRAAAYLELGCFQ 540 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p---~----------------------~~~~~~~ra~~~~~l~~~~ 540 (575)
..+.+.+.-.|+.+|.+++|..|...|++||++.. + +.++.|..+.||.++++++
T Consensus 60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~ 139 (167)
T 3ffl_A 60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK 139 (167)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence 46788899999999999999999999999986521 1 1378999999999999999
Q ss_pred HHHHHHHHH
Q 008170 541 QAEEDCSKT 549 (575)
Q Consensus 541 ~Ai~~~~~a 549 (575)
+|+..++..
T Consensus 140 ~Ai~~Le~I 148 (167)
T 3ffl_A 140 DAIAILDGI 148 (167)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHhcC
Confidence 999986653
No 215
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.48 E-value=0.0067 Score=52.01 Aligned_cols=68 Identities=19% Similarity=0.134 Sum_probs=58.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccH---HHHHHHHHH
Q 008170 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDKKVR---ARVGYVDCS 566 (575)
Q Consensus 495 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~----l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~ 566 (575)
.|..+.+.+.+++|++.|+++.+. .++.+++++|.+|.. .+++++|+..|+++.+. .+. ..++.++..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA 105 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence 899999999999999999999987 689999999999999 89999999999999987 344 344444443
No 216
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.39 E-value=0.0071 Score=70.20 Aligned_cols=65 Identities=11% Similarity=0.134 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
.+....|++.|.++.+.|+|++|++.|.+| +++..|.+.+.++.++|+|++|++.+.++.+.+++
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence 345778999999999999999999999776 88999999999999999999999999999988755
No 217
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.30 E-value=0.012 Score=61.92 Aligned_cols=64 Identities=13% Similarity=-0.017 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 008170 488 ASELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLD 553 (575)
Q Consensus 488 ~a~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~----l~~~~~Ai~~~~~al~l~ 553 (575)
++..+..+|..++. .+++++|+..|+++++. .++.+++++|.+|.. .+++++|+..|+++.+.+
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 145 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG 145 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 45677788888888 88999999999998875 578888899999888 788999999999988763
No 218
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.25 E-value=0.014 Score=57.35 Aligned_cols=65 Identities=11% Similarity=-0.078 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNG--TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p--~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
.+.-.|..+...|++++|++.+.+.|..+| .+..++...+.+++++|+.+.|.+.+++..+.+|+
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d 168 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIED 168 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 346799999999999999999999999987 88999999999999999999999999999999993
No 219
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.026 Score=57.80 Aligned_cols=85 Identities=9% Similarity=0.079 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---c
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK---V 556 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~------p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~---~ 556 (575)
...+..+.+.|..++..|+|++|+..+++++... +....++.+.+.+|..+++|++|...+++++.+.+. .
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 211 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP 211 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc
Confidence 3457889999999999999999999999998762 334789999999999999999999999999987543 2
Q ss_pred HHHHHHHHHHHHHh
Q 008170 557 RARVGYVDCSMLIY 570 (575)
Q Consensus 557 ~~~~~~~~~~l~~~ 570 (575)
....+.++..+|.+
T Consensus 212 ~~~~~~~~~~~g~~ 225 (434)
T 4b4t_Q 212 TQTVAELDLMSGIL 225 (434)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 23344444444443
No 220
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.22 E-value=0.0085 Score=52.52 Aligned_cols=86 Identities=8% Similarity=-0.029 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---cc
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDK---KV 556 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P---~~ 556 (575)
...++++...++..+.|+.|+-.++.++.+..++ +.++..+|.+++..++|..|...|+++|++.- ++
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 4468899999999999999999999988764322 45889999999999999999999999986531 11
Q ss_pred -----------------------H--HHHHHHHHHHHHhhhhh
Q 008170 557 -----------------------R--ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 557 -----------------------~--~~~~~~~~~l~~~~~~i 574 (575)
. ...+.|+..++++..||
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai 142 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI 142 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence 1 45677777778887776
No 221
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.16 E-value=0.013 Score=61.74 Aligned_cols=66 Identities=15% Similarity=0.027 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcc
Q 008170 488 ASELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 488 ~a~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~----l~~~~~Ai~~~~~al~l~P~ 555 (575)
+...+.+.|..+++ .+++++|+..|+++++. .++.+++++|.+|.+ .+++++|+..|+++++.+|+
T Consensus 362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 36788899999999 89999999999999986 468899999999998 89999999999999999843
No 222
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.05 E-value=0.0027 Score=65.38 Aligned_cols=79 Identities=11% Similarity=-0.026 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDCSMLI 569 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~~~l~~ 569 (575)
..|..++.++.+.|+|++|++.|.++ .++..|...+.++...|+|+.|.....+ |.++|++...+..++...|+
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGY 222 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHHHHHHHHHHCCC
Confidence 45666777777777777777777777 3667777777777777777777665554 44667666555666666666
Q ss_pred hhhhh
Q 008170 570 YLLCI 574 (575)
Q Consensus 570 ~~~~i 574 (575)
|..+|
T Consensus 223 ~eEai 227 (449)
T 1b89_A 223 FEELI 227 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.01 E-value=0.021 Score=46.18 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRA 530 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra 530 (575)
......+...|.++++.|++++|+..++++++++|++..+..|+.
T Consensus 43 ~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 43 IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 456788999999999999999999999999999999999999887
No 224
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=95.95 E-value=0.015 Score=60.83 Aligned_cols=65 Identities=12% Similarity=-0.043 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCcccHH
Q 008170 491 LLKEKGNAAFKGK---QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL----GCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 491 ~~~~~g~~~~~~g---~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l----~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
.+.++|..+.+.| ++++|+..|+++.+..+.++..++++|.+|... +++++|+..|+++. |+++.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~ 249 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA 249 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH
Confidence 6677777777777 777777777777777777777777777777655 67777777777776 55553
No 225
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.016 Score=59.52 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA-----------------TYYSNRAAAYLELGCFQQAEEDCSKTISLD 553 (575)
Q Consensus 491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~-----------------~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~ 553 (575)
...+++..+.++|+|++|++.|.++++.+|+.. .++.++|.+|.++|+|++|++.+.+++++.
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 466789999999999999999999999887642 468899999999999999999999999876
Q ss_pred ccc
Q 008170 554 KKV 556 (575)
Q Consensus 554 P~~ 556 (575)
+..
T Consensus 86 ~~~ 88 (434)
T 4b4t_Q 86 MQF 88 (434)
T ss_dssp HTS
T ss_pred HHc
Confidence 653
No 226
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=95.69 E-value=0.011 Score=60.82 Aligned_cols=125 Identities=17% Similarity=0.155 Sum_probs=71.0
Q ss_pred ccccccccCCchhHHhHHHHHHHHhhhhhhhccCCCCCCC------CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008170 442 SISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPD------TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEA 515 (575)
Q Consensus 442 Glqivg~~~~d~~ll~~a~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~a 515 (575)
..+-+|....+....+-|..+.............-..-.+ .-....+...|++...++...|+|+.|..+..+
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~- 202 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLH- 202 (449)
T ss_dssp -------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHH-
Confidence 5566777777777666666655533211110000000000 000113467889999999999999999888775
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Q 008170 516 IKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDCSMLIY 570 (575)
Q Consensus 516 l~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~~~l~~~ 570 (575)
|...| .-......+|.+.|++++|+..+++++.+++.+...+-.+.....+|
T Consensus 203 L~~~a---d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 203 IVVHA---DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp TTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHhCH---hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 33444 44556888999999999999999999999988875444444444443
No 227
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.63 E-value=0.033 Score=64.82 Aligned_cols=69 Identities=12% Similarity=0.082 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------------CCHHHHHHHHHHHHHcCCHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG-------------------------TSATYYSNRAAAYLELGCFQQAE 543 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-------------------------~~~~~~~~ra~~~~~l~~~~~Ai 543 (575)
+..|...+..+.+.|+|++|++.|.+|...++ .++..+..++..|.++|.|++|+
T Consensus 1221 A~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI 1300 (1630)
T 1xi4_A 1221 VSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELI 1300 (1630)
T ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHH
Confidence 34566667777777777777777776644332 13344556666677777777777
Q ss_pred HHHHHHHHhCcccH
Q 008170 544 EDCSKTISLDKKVR 557 (575)
Q Consensus 544 ~~~~~al~l~P~~~ 557 (575)
..|+++|.+++.+.
T Consensus 1301 ~LlE~aL~LeraH~ 1314 (1630)
T 1xi4_A 1301 TMLEAALGLERAHM 1314 (1630)
T ss_pred HHHHHHhccChhHh
Confidence 77777777776654
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.51 E-value=0.03 Score=53.95 Aligned_cols=52 Identities=13% Similarity=0.083 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCccc
Q 008170 505 WNKAVNYYSEAIKLNGT--SATYYSNRAAAYLEL-----GCFQQAEEDCSKTISLDKKV 556 (575)
Q Consensus 505 ~~~Ai~~~~~al~~~p~--~~~~~~~ra~~~~~l-----~~~~~Ai~~~~~al~l~P~~ 556 (575)
..+|...++++++++|+ +..+|..+|..|.+. |+.++|.+.|+++|+++|+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~ 237 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH 237 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence 37888999999999999 677999999999996 99999999999999999975
No 229
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=95.18 E-value=0.047 Score=56.89 Aligned_cols=59 Identities=10% Similarity=-0.004 Sum_probs=29.2
Q ss_pred HHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHH
Q 008170 489 SELLKEKGNA-A--FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-----CFQQAEEDCSKTI 550 (575)
Q Consensus 489 a~~~~~~g~~-~--~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~-----~~~~Ai~~~~~al 550 (575)
+..+.+.|.. + ...+++++|+..|+++++. .++.+++++|.+|. .| ++++|+..|+++.
T Consensus 248 ~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 248 PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 3344455554 2 2445555555555555533 24555555555554 22 5555555555555
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.74 E-value=0.061 Score=46.64 Aligned_cols=70 Identities=9% Similarity=-0.043 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-cc-cH---HHHHHHHHHHHHhhhhh
Q 008170 505 WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG---CFQQAEEDCSKTISLD-KK-VR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 505 ~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~---~~~~Ai~~~~~al~l~-P~-~~---~~~~~~~~~l~~~~~~i 574 (575)
.+.+.+.|.+.++.++.+..+.++.|.++.+.+ ++++++..++++++.+ |+ +. ..++..+..+++|..|+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 456778888899989999999999999999988 6779999999999998 73 33 44555556666776654
No 231
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.71 E-value=0.086 Score=58.05 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008170 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549 (575)
Q Consensus 488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~a 549 (575)
....+..++.-+.++|+|+-|+.+-++|+...|.+...|+.++.||.++++|+.|+-.++-+
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 35567788999999999999999999999999999999999999999999999999877766
No 232
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=93.86 E-value=0.21 Score=48.86 Aligned_cols=88 Identities=8% Similarity=-0.102 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHhCcc--
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT----SATYYSNRAAA--YLELG--CFQQAEEDCSKTISLDKK-- 555 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~~~~~~ra~~--~~~l~--~~~~Ai~~~~~al~l~P~-- 555 (575)
....+.+...+..++++|+.+.|.+.+++..+.+|+ +-....+++.+ .+..| ++++|+..|+++.+..|+
T Consensus 133 ~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~ 212 (310)
T 3mv2_B 133 EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK 212 (310)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH
T ss_pred cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc
Confidence 356777777888888899999999888888888883 22333444444 55556 888888888888887776
Q ss_pred cHHHHHHHHHHHHHhhhh
Q 008170 556 VRARVGYVDCSMLIYLLC 573 (575)
Q Consensus 556 ~~~~~~~~~~~l~~~~~~ 573 (575)
....+..++..+|+|..|
T Consensus 213 ~~~lLln~~~~~g~~~eA 230 (310)
T 3mv2_B 213 TQLGLLNLHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHHHTCHHHH
T ss_pred cHHHHHHHHHHcCCHHHH
Confidence 223333366666766554
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.82 E-value=0.84 Score=39.16 Aligned_cols=105 Identities=11% Similarity=-0.004 Sum_probs=78.0
Q ss_pred cccCCchhHHhHHHHHHHHhhhhhhhccCCCCCCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008170 447 TYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYY 526 (575)
Q Consensus 447 g~~~~d~~ll~~a~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~ 526 (575)
|.+..|..|-++-..+++.+.. .+|.. .......+..|...+.- ...++.++|-+.|+.++++....+.+|
T Consensus 27 g~p~~d~~l~rlrd~YerAia~-------~Pp~k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiw 97 (161)
T 4h7y_A 27 SVPLSDALLNKLIGRYSQAIEA-------LPPDK-YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVH 97 (161)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHH-------SCGGG-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHc-------CCccc-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHH
Confidence 4555664444444444443332 22222 33456777778777744 566999999999999999988889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Q 008170 527 SNRAAAYLELGCFQQAEEDCSKTISLDKKVRARV 560 (575)
Q Consensus 527 ~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~ 560 (575)
...|..-.++|+...|.+.+.+++.+.|.....+
T Consensus 98 i~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 98 ISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 9999999999999999999999999999766433
No 234
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.65 E-value=0.35 Score=45.83 Aligned_cols=62 Identities=24% Similarity=0.187 Sum_probs=58.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 496 g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
...+++.|+.++|++.....|+.+|.|+.....+.+.+.-.|+|+.|...++-+.+++|+..
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 35678999999999999999999999999999999999999999999999999999999877
No 235
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.73 E-value=0.97 Score=47.32 Aligned_cols=79 Identities=18% Similarity=0.106 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q 008170 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDCSMLI 569 (575)
Q Consensus 491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~~~l~~ 569 (575)
.+...|....-...+..|..+|.+|+.++|++...|+.+|.+....++.-+|+-+|.+++....-+..+...+...+.+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 5567888888888899999999999999999999999999999999999999999999998766677666666555443
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.57 E-value=1.4 Score=36.73 Aligned_cols=47 Identities=9% Similarity=0.101 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAY 533 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~ 533 (575)
..-+.++..+..+++.|+|++|.++.+..|+.+|++..+..-+..+-
T Consensus 72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 56778899999999999999999999999999999988877665543
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.26 E-value=1.4 Score=44.65 Aligned_cols=62 Identities=8% Similarity=-0.037 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~ 551 (575)
..+..+...+...|++++++..+.+++..+|-+-.+|..+-.++...|+..+|++.|+++-+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556778889999999999999999999999999999999999999999999999988743
No 238
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=88.67 E-value=0.77 Score=50.26 Aligned_cols=67 Identities=13% Similarity=-0.024 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAV-NYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai-~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
|.....|...+.-+.+.|+.++|. ..|.+|+..+|++..+|...+....+.+++++|.+.|+++++.
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456788999999999999999997 9999999999999999999999999999999999999999975
No 239
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=86.17 E-value=4.6 Score=44.12 Aligned_cols=69 Identities=12% Similarity=0.013 Sum_probs=62.8
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC---FQQAEEDCSKTISLD 553 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~---~~~Ai~~~~~al~l~ 553 (575)
+|.+...|........+.++++.+-..|++++...|....+|......-.+.++ ++.+...|++++...
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~ 133 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKE 133 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSS
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhc
Confidence 366788999999999999999999999999999999999999999999999999 999999999999988
No 240
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=84.07 E-value=4.9 Score=30.61 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 518 (575)
.+.+..+..+|...-+.|+|++|+.+|.++|+.
T Consensus 16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 16 EEMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 356777888899999999999999999988864
No 241
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=82.67 E-value=6.1 Score=30.05 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 518 (575)
+++..+..++...-+.|+|++|+.+|.++|+.
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667888888899999999999999988864
No 242
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.46 E-value=3.8 Score=42.02 Aligned_cols=85 Identities=9% Similarity=-0.105 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---SATYYSNRAAAYLELGCFQQAEEDCSKTISL--DKKVRARVGYV 563 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~---~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l--~P~~~~~~~~~ 563 (575)
...+..+|..+++.|++++|++.|.++...... -...+.+.-.+++..++|..+...++++-.+ ...++..++++
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 345678999999999999999999999987543 3678889999999999999999999998654 22334445555
Q ss_pred HHHHHHhhhh
Q 008170 564 DCSMLIYLLC 573 (575)
Q Consensus 564 ~~~l~~~~~~ 573 (575)
....|.+.++
T Consensus 211 k~~~gl~~l~ 220 (429)
T 4b4t_R 211 KTYYGIHCLA 220 (429)
T ss_dssp HHHHHHGGGG
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.40 E-value=3.6 Score=34.90 Aligned_cols=47 Identities=11% Similarity=0.037 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAY 533 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~ 533 (575)
..-+.++-.+..+++.|+|++|.++.+..|+.+|++..+..-+..+-
T Consensus 75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie 121 (144)
T 1y8m_A 75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE 121 (144)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 35667888999999999999999999999999999988766554443
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.83 E-value=4.2 Score=33.99 Aligned_cols=47 Identities=11% Similarity=0.037 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAY 533 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~ 533 (575)
..-+.++-.+..+++.|+|++|.++.+..|+.+|++..+..-+..+-
T Consensus 76 ~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie 122 (134)
T 3o48_A 76 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE 122 (134)
T ss_dssp GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 45678888999999999999999999999999999988877665554
No 245
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=80.43 E-value=8.9 Score=31.31 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 518 (575)
.+.+..+..++...-+.++|++|+.+|.+++++
T Consensus 15 l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 15 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 466777888888888999999999999998875
No 246
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.20 E-value=11 Score=38.09 Aligned_cols=79 Identities=10% Similarity=-0.006 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHHHH
Q 008170 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGT------SATYYSNRAAAYLELGCFQQAEEDCSKTISLD---KKVRARVGYVD 564 (575)
Q Consensus 494 ~~g~~~~~~g~~~~Ai~~~~~al~~~p~------~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~---P~~~~~~~~~~ 564 (575)
.+|..|+..|+|.+|+..+++.++.... ..+++......|..++++.++...++++.+.. +-.+...+.+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 6899999999999999999999875322 15778999999999999999999999997653 12345556666
Q ss_pred HHHHHhhh
Q 008170 565 CSMLIYLL 572 (575)
Q Consensus 565 ~~l~~~~~ 572 (575)
.+.|.+.+
T Consensus 184 ~~~Gi~~l 191 (394)
T 3txn_A 184 LQSGILHA 191 (394)
T ss_dssp HHHHHHHH
T ss_pred HHhhHHHH
Confidence 66665554
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=78.98 E-value=9.6 Score=38.35 Aligned_cols=35 Identities=9% Similarity=-0.083 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 524 ~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
.+...++.+++.+|++.+++..+.+++..+|-+..
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~ 206 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREP 206 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 45667888899999999999999999999997763
No 248
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=78.83 E-value=10 Score=29.03 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 518 (575)
...+..+..++..+-+.|+|++|+.+|.++++.
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456777888999999999999999999999865
No 249
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=77.86 E-value=6.8 Score=43.20 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHH-------------HHHHHHcCCHHHHHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGTSATYYSNR-------------AAAYLELGCFQQAEEDCS 547 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~~~~~r-------------a~~~~~l~~~~~Ai~~~~ 547 (575)
...|.+.|..+.++++++.|+++|.++=.. ...+...+..+ ..+|+++|++++|++.|.
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHH
Confidence 568999999999999999999999985221 12333322222 335556677777776665
Q ss_pred H
Q 008170 548 K 548 (575)
Q Consensus 548 ~ 548 (575)
+
T Consensus 761 ~ 761 (814)
T 3mkq_A 761 K 761 (814)
T ss_dssp H
T ss_pred H
Confidence 4
No 250
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=76.83 E-value=6.4 Score=34.74 Aligned_cols=29 Identities=14% Similarity=-0.064 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIK 517 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~ 517 (575)
...|+..|...+++|+++-|.++|.++=.
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 56899999999999999999999988543
No 251
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=76.04 E-value=16 Score=31.87 Aligned_cols=67 Identities=10% Similarity=0.018 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hh---------------CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAI--KL---------------NGTSATY-YSNRAAAYLELGCFQQAEEDCSKTI 550 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al--~~---------------~p~~~~~-~~~ra~~~~~l~~~~~Ai~~~~~al 550 (575)
+...+-+..++.+.++|..|+.+.++.| +. +|.+-+. +...|....+.++-+||+..+.+..
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 5555567788888999999999999988 22 2444443 5567888888899999999998888
Q ss_pred HhCcc
Q 008170 551 SLDKK 555 (575)
Q Consensus 551 ~l~P~ 555 (575)
..+|-
T Consensus 142 ~~~~l 146 (242)
T 3kae_A 142 GKSFL 146 (242)
T ss_dssp HHCCC
T ss_pred CCccc
Confidence 77763
No 252
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=72.92 E-value=6.7 Score=30.57 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=29.5
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 518 (575)
..+.+..+..++...-+.|+|++|+.+|.++++.
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3567788889999999999999999999998865
No 253
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=72.70 E-value=8.3 Score=33.03 Aligned_cols=71 Identities=18% Similarity=-0.026 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170 486 IDASELLKEKGNAAFKGKQW------NKAVNYYSEAIKLNGTS--------ATYYSNRAAAYLELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~------~~Ai~~~~~al~~~p~~--------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~ 551 (575)
|.+.+.|.+....+-+.|+. ++-++.|++|+..-|.. ..+|.+.|.. ..+++.++|.+.|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHH
Confidence 45677788877777777888 88889999999876642 5667777654 677999999999999998
Q ss_pred hCcccH
Q 008170 552 LDKKVR 557 (575)
Q Consensus 552 l~P~~~ 557 (575)
+..++.
T Consensus 89 ~hKkFA 94 (161)
T 4h7y_A 89 NCKKFA 94 (161)
T ss_dssp HCTTBH
T ss_pred HhHHHH
Confidence 865553
No 254
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=71.88 E-value=8.1 Score=40.32 Aligned_cols=52 Identities=8% Similarity=-0.034 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 505 WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 505 ~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
.+.....|++++...|..+.+|.+.+..+...++.++|...|+++++. |++.
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~ 246 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM 246 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH
Confidence 345677899999999999999999999999999999999999999999 9765
No 255
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=71.08 E-value=9.4 Score=29.05 Aligned_cols=49 Identities=12% Similarity=0.227 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHH-HHHHHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT--SATYY-SNRAAAYLE 535 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--~~~~~-~~ra~~~~~ 535 (575)
++++.+...|..+++.++|.+|+..|+++..+..+ -..++ +.++.|.-+
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~kk 102 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECRKK 102 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999866422 22333 555555433
No 256
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=70.74 E-value=8.7 Score=29.55 Aligned_cols=33 Identities=6% Similarity=0.219 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 518 (575)
-..+..+-.++..+.+.|+|++||++..+|..+
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 356777888999999999999999998887743
No 257
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.32 E-value=7.9 Score=40.34 Aligned_cols=72 Identities=11% Similarity=0.003 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG--T---SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p--~---~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
..++..+.-.-..|+..+.|++|.....++.-... . ....+|..|.++.-+++|.+|.+++.+|++..|.+.
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 35677777788889999999999999999852211 1 156788899999999999999999999999877543
No 258
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=70.26 E-value=7.3 Score=29.72 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=29.3
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 518 (575)
..+.+..+..++...-+.|+|++|+.+|.+++++
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3567788888999999999999999999999875
No 259
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=68.66 E-value=9 Score=28.28 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008170 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY 525 (575)
Q Consensus 493 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~ 525 (575)
..+|..+..+|++++|+.+|.+||...|+-..+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 468999999999999999999999998876544
No 260
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=63.21 E-value=30 Score=35.95 Aligned_cols=64 Identities=9% Similarity=0.033 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-GTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
...|...-..+.+.|++++|++.|.+..+.. .-+...|+.+-..|.+.|++++|.+.+++..+.
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4456667777888888888888888777653 235667777777888888888888888887654
No 261
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=60.82 E-value=11 Score=41.57 Aligned_cols=51 Identities=10% Similarity=0.017 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 524 ~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~~~i 574 (575)
.++.--+..++..++|+-|++.+++|+..-|... ..+..++..+++|..||
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~AL 391 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKAL 391 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHH
Confidence 3555567777889999999999999999999876 67888899999999886
No 262
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=59.81 E-value=29 Score=30.31 Aligned_cols=53 Identities=8% Similarity=0.034 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI 550 (575)
Q Consensus 493 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al 550 (575)
.-.+..++-.|+|..++-.+ .+-+.....+..+.||.++++|..|+..+++.+
T Consensus 37 lL~~I~LyyngEY~R~Lf~L-----~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il 89 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHL-----HKLNTCTSKYYESLCYKKKKDYKKAIKSLESIL 89 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHH-----HTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhhhhhhcchHhHHHHHH-----HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888999999887665 233567788889999999999999999999999
No 263
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=57.40 E-value=62 Score=27.85 Aligned_cols=63 Identities=5% Similarity=0.024 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH---HHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYY---SNRAAAYLELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~---~~ra~~~~~l~~~~~Ai~~~~~al~ 551 (575)
...-+..+..+|+.|+|=+|=+.++..-+..+.. ...+ .--|..+.+.|++..|...+.+++.
T Consensus 32 ~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 32 LRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344668999999999999999999999876544 2233 3344455667999999999999986
No 264
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=56.76 E-value=46 Score=28.00 Aligned_cols=62 Identities=18% Similarity=0.009 Sum_probs=46.4
Q ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170 492 LKEKGNA-AFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553 (575)
Q Consensus 492 ~~~~g~~-~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~ 553 (575)
+.+.+.. +.++|+-++--+.+...+.-++-++..+..+|.+|.++|+-.+|-+.+.+|.+.-
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3444443 4566777776666766666667789999999999999999999999999998754
No 265
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=56.60 E-value=40 Score=29.61 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=42.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008170 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549 (575)
Q Consensus 495 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~a 549 (575)
+-....+.|+++.|.+...+. ++...|..+|..-+..|+++-|.++|.++
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 456678899999999886544 67889999999999999999999988875
No 266
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=56.18 E-value=19 Score=28.06 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=31.7
Q ss_pred ChhHHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008170 485 SIDASELLK----EKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT 524 (575)
Q Consensus 485 ~~~~a~~~~----~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~ 524 (575)
+++..+.++ .+|..++.+|+++.|+.+|.+||...|+-..
T Consensus 12 d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 12 DAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 455555544 6899999999999999999999999876443
No 267
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=55.53 E-value=18 Score=27.78 Aligned_cols=28 Identities=29% Similarity=0.250 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170 523 ATYYSNRAAAYLELGCFQQAEEDCSKTI 550 (575)
Q Consensus 523 ~~~~~~ra~~~~~l~~~~~Ai~~~~~al 550 (575)
+-.+..|+..+++.|+|++||++..++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 5668889999999999999998877765
No 268
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=55.25 E-value=19 Score=39.09 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC 538 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~ 538 (575)
.+...+++..++..|+|.-|.+..+.++..+|++..+..-++.+|.+++.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999998864
No 269
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.86 E-value=1.2e+02 Score=30.73 Aligned_cols=64 Identities=11% Similarity=0.081 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--GTS----ATYYSNRAAAYLELGCFQQAEEDCSKTI 550 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--p~~----~~~~~~ra~~~~~l~~~~~Ai~~~~~al 550 (575)
+.++....++..++.+|+|.+|...+.....-. ..+ ...+..-...++..++|.+|...++++.
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456666778999999999999999988866321 111 5678888888999999999999999874
No 270
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=50.58 E-value=57 Score=33.74 Aligned_cols=68 Identities=10% Similarity=-0.067 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-CFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~-~~~~Ai~~~~~al~l~P~~~ 557 (575)
...|...+....+.++.+.|...|.+| +..+.....|...|..-...+ +++.|...|+++++..|+.+
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~ 354 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST 354 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH
Confidence 355677777777777888888888888 433345667766666666555 58888888888888777765
No 271
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=50.06 E-value=33 Score=30.88 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=34.6
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA 523 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~ 523 (575)
..+.+..++-.|..++.+++|.+|.+++.+|++..|...
T Consensus 10 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 10 TAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 356778888899999999999999999999999988764
No 272
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=50.05 E-value=1.1e+02 Score=29.64 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCcc
Q 008170 532 AYLELGCFQQAEEDCSKTISLDKK 555 (575)
Q Consensus 532 ~~~~l~~~~~Ai~~~~~al~l~P~ 555 (575)
..+|.++|..|...+++.|++.|+
T Consensus 207 ~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 207 LFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC
Confidence 456889999999999999999885
No 273
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=48.39 E-value=53 Score=35.84 Aligned_cols=47 Identities=19% Similarity=0.113 Sum_probs=36.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008170 498 AAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549 (575)
Q Consensus 498 ~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~a 549 (575)
.+++.|++++|.+.. ...++...|.++|..+++.++++.|++.|.++
T Consensus 661 ~~l~~~~~~~A~~~~-----~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 661 LALKVGQLTLARDLL-----TDESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTCHHHHHHHH-----TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHH-----HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 345556666666553 23467899999999999999999999999985
No 274
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=48.10 E-value=31 Score=40.08 Aligned_cols=82 Identities=15% Similarity=0.065 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008170 493 KEKGNAAFKGKQWNKAVNYYSEAIKL-----------------------NGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549 (575)
Q Consensus 493 ~~~g~~~~~~g~~~~Ai~~~~~al~~-----------------------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~a 549 (575)
+-+|..++..|++++|.++|.+|-.- ....+..|+.....+.+.+.++.+++..+.|
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66899999999999999999886310 1112456777778888999999999999999
Q ss_pred HHhCc-ccH-------HHHHHHHHHHHHhhhhh
Q 008170 550 ISLDK-KVR-------ARVGYVDCSMLIYLLCI 574 (575)
Q Consensus 550 l~l~P-~~~-------~~~~~~~~~l~~~~~~i 574 (575)
|+..+ +.. .........+++|..|.
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 98754 322 23455566677777664
No 275
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=44.50 E-value=62 Score=31.31 Aligned_cols=27 Identities=11% Similarity=-0.017 Sum_probs=22.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 531 AAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 531 ~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
...+|.++|..|...+++.|++.|+..
T Consensus 215 ~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 215 SQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 345688999999999999999998644
No 276
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=39.62 E-value=31 Score=26.55 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHH
Q 008170 506 NKAVNYYSEAIKLNGTSATYYS 527 (575)
Q Consensus 506 ~~Ai~~~~~al~~~p~~~~~~~ 527 (575)
.+++..-.++++.+|+++.++.
T Consensus 33 ~~~l~~Al~~L~~~psNPa~LA 54 (92)
T 2g0u_A 33 NKQLQDAQANLTKNPSDPTALA 54 (92)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHH
Confidence 3444444444455555555433
No 277
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=39.56 E-value=1.1e+02 Score=31.52 Aligned_cols=68 Identities=3% Similarity=-0.131 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccc
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-GTSATYYSNRAAAYLELGCFQQAEEDCSKTIS--LDKKV 556 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~--l~P~~ 556 (575)
...|...-..+.+.|++++|.+.|.+-.+.. .-+...|..+-.++.+.|++++|.+.+++.-+ ..|+.
T Consensus 140 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~ 210 (501)
T 4g26_A 140 LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK 210 (501)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCH
T ss_pred cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCH
Confidence 5567778888999999999999999988764 23567888899999999999999999999864 45653
No 278
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=36.88 E-value=2.8e+02 Score=31.68 Aligned_cols=72 Identities=8% Similarity=-0.063 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL----NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL--DKKVR 557 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~----~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l--~P~~~ 557 (575)
...-..|...-+.+.+.|+.++|.+.+.+--+. ..-+...|+-+-..|.+.|++++|++.+++..+. .||..
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 344556778889999999999999999764432 2346788999999999999999999999999754 57644
No 279
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=35.54 E-value=55 Score=24.67 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170 506 NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI 550 (575)
Q Consensus 506 ~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al 550 (575)
++|++..++|++.| +.|+|++|+..|.+++
T Consensus 17 ~~Ai~lv~~Ave~D---------------~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 17 EMARKYAINAVKAD---------------KEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHH
Confidence 56666666666654 4555555555555544
No 280
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=35.11 E-value=43 Score=25.18 Aligned_cols=21 Identities=5% Similarity=0.083 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHH
Q 008170 506 NKAVNYYSEAIKLNGTSATYY 526 (575)
Q Consensus 506 ~~Ai~~~~~al~~~p~~~~~~ 526 (575)
.+++..-.++|+.+|+++.++
T Consensus 27 ~~~v~~Ai~~L~~~PsnPa~L 47 (85)
T 2ca5_A 27 QGELTLALDKLAKNPSNPQLL 47 (85)
T ss_dssp HHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHH
Confidence 344444444555555555443
No 281
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.79 E-value=30 Score=27.95 Aligned_cols=16 Identities=13% Similarity=0.374 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhCC
Q 008170 505 WNKAVNYYSEAIKLNG 520 (575)
Q Consensus 505 ~~~Ai~~~~~al~~~p 520 (575)
|++|..+.++||++|.
T Consensus 19 h~~AF~~Is~AL~~DE 34 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTDE 34 (116)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhh
Confidence 5666666666666653
No 282
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=33.12 E-value=62 Score=24.29 Aligned_cols=14 Identities=29% Similarity=0.304 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhC
Q 008170 506 NKAVNYYSEAIKLN 519 (575)
Q Consensus 506 ~~Ai~~~~~al~~~ 519 (575)
++|++..++|++.|
T Consensus 9 ~~Ai~lv~~Ave~D 22 (83)
T 2v6y_A 9 DMARKYAILAVKAD 22 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46777777776664
No 283
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=31.88 E-value=2.9e+02 Score=25.90 Aligned_cols=38 Identities=13% Similarity=-0.004 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008170 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA 523 (575)
Q Consensus 486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~ 523 (575)
|.++..-......+.-.|+|+.|...++.+.+++|+..
T Consensus 28 P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 28 PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 45566555666777888999999999999999998864
No 284
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=30.63 E-value=1.4e+02 Score=23.03 Aligned_cols=57 Identities=9% Similarity=-0.096 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHH--HHHHHHHcCCHHHHHHHHHHHHH
Q 008170 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSN--RAAAYLELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 493 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~--ra~~~~~l~~~~~Ai~~~~~al~ 551 (575)
+..|..+|+.|+|=+|=+.++..-...|.. ...+.+ -|..+.+.|+. |...+.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 457889999999999999999988887542 223333 34444456777 8999999976
No 285
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.14 E-value=70 Score=25.79 Aligned_cols=31 Identities=29% Similarity=0.296 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIK 517 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~ 517 (575)
+++..+.++|...-..|+-++|+++|++.|+
T Consensus 20 ~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 20 KKAFLFVNKGLNTDELGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 4466677777777778888888888888774
No 286
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=29.39 E-value=62 Score=24.10 Aligned_cols=30 Identities=10% Similarity=0.028 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 518 (575)
.-.....|..+-..|+|+.|+.+|+.+++.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 334456888888999999999999999864
No 287
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=29.39 E-value=3.5e+02 Score=25.15 Aligned_cols=65 Identities=17% Similarity=0.073 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHh----CCCCH---HHHHHHHHHHHH-cCCHHHHHHHHHH
Q 008170 487 DASELLKEKGNAAFK----------GKQWNKAVNYYSEAIKL----NGTSA---TYYSNRAAAYLE-LGCFQQAEEDCSK 548 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~----------~g~~~~Ai~~~~~al~~----~p~~~---~~~~~ra~~~~~-l~~~~~Ai~~~~~ 548 (575)
...-.++.+|.-|.- ..--+.|.+.|++|+++ .|.++ .+..|.+..|+. +++.++|+..+++
T Consensus 144 skVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~ 223 (260)
T 2npm_A 144 SKVFYFKMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKE 223 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445566667766531 12235788899999875 45554 346667777776 7999999999888
Q ss_pred HHH
Q 008170 549 TIS 551 (575)
Q Consensus 549 al~ 551 (575)
++.
T Consensus 224 Afd 226 (260)
T 2npm_A 224 AFE 226 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 288
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=29.28 E-value=1.1e+02 Score=31.07 Aligned_cols=31 Identities=16% Similarity=-0.063 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 522 SATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 522 ~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
...++..+|.+|+.+++|++|+..+++++..
T Consensus 189 k~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 3568888999999999999999999999864
No 289
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=28.96 E-value=1.2e+02 Score=22.13 Aligned_cols=31 Identities=10% Similarity=0.198 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 527 SNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 527 ~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
..+|..+...|++++|+..+-+|+...|+=.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 3578888899999999999999999988643
No 290
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.47 E-value=2.3e+02 Score=28.60 Aligned_cols=69 Identities=10% Similarity=0.085 Sum_probs=55.9
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIK---LNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~---~~p~~----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
+.....+.+..+...++..++|.+|...++++.. -.+.. ...+...+..+...++|.+|-.+|.++++.
T Consensus 172 ~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 172 EMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4567788999999999999999999999998742 22333 356777888888899999999999999864
No 291
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=34.51 E-value=12 Score=40.58 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQA 542 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~A 542 (575)
++...+++..++.+|+|.-|.+..+.++..+|++..+..-++.+|.+++.-.+.
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 456677888999999999999999999999999999999999999998865544
No 292
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=28.01 E-value=2.2e+02 Score=28.33 Aligned_cols=67 Identities=9% Similarity=-0.124 Sum_probs=55.2
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN---GTS----ATYYSNRAAAYL-ELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~---p~~----~~~~~~ra~~~~-~l~~~~~Ai~~~~~al~ 551 (575)
.....+.+......|+..+++.++-..|++|.... +.+ +.+...-|..++ ..++|++|..+|-++++
T Consensus 135 ~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 135 KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 35667778889999999999999999999998654 122 456778889999 89999999999999874
No 293
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=27.40 E-value=1.2e+02 Score=30.93 Aligned_cols=31 Identities=16% Similarity=0.085 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 522 SATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 522 ~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
...++..+|.+|+-+++|++|+..++++|..
T Consensus 195 k~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 195 RWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3678888999999999999999999999864
No 294
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=26.56 E-value=2.6e+02 Score=25.60 Aligned_cols=65 Identities=17% Similarity=0.080 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHH-cCCHHHHHHHHH
Q 008170 487 DASELLKEKGNAAFK----------GKQWNKAVNYYSEAIKL-----NGTSA---TYYSNRAAAYLE-LGCFQQAEEDCS 547 (575)
Q Consensus 487 ~~a~~~~~~g~~~~~----------~g~~~~Ai~~~~~al~~-----~p~~~---~~~~~ra~~~~~-l~~~~~Ai~~~~ 547 (575)
...-.++.+|.-|.- ..--+.|.+.|++|+++ .|.++ .+..|.+..|+. +++.++|+..++
T Consensus 118 skVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk 197 (234)
T 2br9_A 118 SKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAK 197 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred hHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445566667765531 12235778889998854 56665 345666666665 799999999888
Q ss_pred HHHH
Q 008170 548 KTIS 551 (575)
Q Consensus 548 ~al~ 551 (575)
+++.
T Consensus 198 ~afd 201 (234)
T 2br9_A 198 AAFD 201 (234)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 295
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=26.51 E-value=91 Score=23.95 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhC
Q 008170 505 WNKAVNYYSEAIKLN 519 (575)
Q Consensus 505 ~~~Ai~~~~~al~~~ 519 (575)
.+.|+...++|++.|
T Consensus 12 l~~Ai~lv~~Ave~D 26 (93)
T 1wfd_A 12 STAAVAVLKRAVELD 26 (93)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 457777777777664
No 296
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=26.50 E-value=1.2e+02 Score=26.95 Aligned_cols=35 Identities=23% Similarity=0.065 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557 (575)
Q Consensus 523 ~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~ 557 (575)
...+|.+|..++..++|.+|.+++.+|++..|...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 56788999999999999999999999999987643
No 297
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=26.34 E-value=2.3e+02 Score=28.81 Aligned_cols=63 Identities=11% Similarity=-0.034 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Cccc
Q 008170 494 EKGNAAFKGKQWNKAVNYYSEAIKLNG----------TSATYYSNRAAAYLELGCFQQAEEDCSKTISL-DKKV 556 (575)
Q Consensus 494 ~~g~~~~~~g~~~~Ai~~~~~al~~~p----------~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l-~P~~ 556 (575)
+.-..||+.++...+-..++..-...+ +-...+|..|..++..++|.+|.+++.+|++. .|..
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 345678899999888777644322221 12577999999999999999999999999998 7754
No 298
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.94 E-value=86 Score=35.51 Aligned_cols=52 Identities=19% Similarity=0.054 Sum_probs=42.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI 550 (575)
Q Consensus 495 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al 550 (575)
....++..++|+-+. +.+...|.++..-|-+|.+|+..|++++|..+|+||-
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 456677788887543 3456778888888999999999999999999999863
No 299
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=25.60 E-value=1.4e+02 Score=30.74 Aligned_cols=31 Identities=13% Similarity=0.068 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 522 SATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 522 ~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
...++..+|.+|+.+++|++|+..+++++..
T Consensus 202 k~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 202 NEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3568889999999999999999999999965
No 300
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=25.05 E-value=1e+02 Score=23.07 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170 505 WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 505 ~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~ 551 (575)
.++|+...++|++.+ +.|+|++|+..|.++++
T Consensus 10 l~~A~~l~~~Av~~D---------------~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 10 LTKGIELVQKAIDLD---------------TATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHH
Confidence 356666666666543 45566666665555543
No 301
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=24.91 E-value=88 Score=25.27 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhC
Q 008170 505 WNKAVNYYSEAIKLN 519 (575)
Q Consensus 505 ~~~Ai~~~~~al~~~ 519 (575)
++.|+...++|++.+
T Consensus 15 l~kAi~lv~~Ave~D 29 (117)
T 2cpt_A 15 LQKAIDLASKAAQED 29 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 357777777777553
No 302
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=24.80 E-value=2.2e+02 Score=21.36 Aligned_cols=23 Identities=22% Similarity=0.078 Sum_probs=12.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 008170 529 RAAAYLELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 529 ra~~~~~l~~~~~Ai~~~~~al~ 551 (575)
+|.-.-+.|+|++|+..|.++++
T Consensus 22 ~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 22 RAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333456666666666666553
No 303
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=24.75 E-value=1.3e+02 Score=30.88 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 522 SATYYSNRAAAYLELGCFQQAEEDCSKTISL 552 (575)
Q Consensus 522 ~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l 552 (575)
...++..+|.+|+.+++|++|++.++++|..
T Consensus 201 k~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 201 YWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 3568888999999999999999999999975
No 304
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=24.64 E-value=83 Score=32.61 Aligned_cols=34 Identities=12% Similarity=-0.126 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170 525 YYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558 (575)
Q Consensus 525 ~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~ 558 (575)
.+..+|........+..|..+|.+|+.++|++..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~ 187 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ 187 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 5667888888888899999999999999998773
No 305
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=22.80 E-value=18 Score=33.87 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518 (575)
Q Consensus 485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~ 518 (575)
..+.+..+..+|..+-++|+|++|+.+|.+++++
T Consensus 19 ~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~ 52 (257)
T 2ymb_A 19 QSTAAATVLKRAVELDSESRYPQALVCYQEGIDL 52 (257)
T ss_dssp ----------------------------------
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456777888999999999999999999999875
No 306
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.93 E-value=2.3e+02 Score=31.98 Aligned_cols=65 Identities=18% Similarity=0.116 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-h--------------------CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008170 493 KEKGNAAFKGKQWNKAVNYYSEAIK-L--------------------NGT--SATYYSNRAAAYLELGCFQQAEEDCSKT 549 (575)
Q Consensus 493 ~~~g~~~~~~g~~~~Ai~~~~~al~-~--------------------~p~--~~~~~~~ra~~~~~l~~~~~Ai~~~~~a 549 (575)
+-+|..++..|++++|.++|.+|-. + +++ ....|.+....+.+.+-++-+++.++.|
T Consensus 844 yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lA 923 (950)
T 4gq2_M 844 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 923 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6699999999999999999987541 1 111 1347888888888999999999999999
Q ss_pred HHh-CcccH
Q 008170 550 ISL-DKKVR 557 (575)
Q Consensus 550 l~l-~P~~~ 557 (575)
|+. ++++.
T Consensus 924 I~~~~~dd~ 932 (950)
T 4gq2_M 924 DASKETDDE 932 (950)
T ss_dssp HHTCCSCCH
T ss_pred HhhcccCCc
Confidence 974 44444
No 307
>3dza_A Uncharacterized putative membrane protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=20.59 E-value=2e+02 Score=25.39 Aligned_cols=63 Identities=13% Similarity=0.015 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIK-------LNGT-SATYYSNRAAAYLELGCFQQAEEDCSKTIS 551 (575)
Q Consensus 489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~-------~~p~-~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~ 551 (575)
.......+|..++.|+.++|++.++-+=. +-|- ...-..+++..++..|+|++|-..++++..
T Consensus 108 K~aAI~~AN~~Lk~Gd~~~A~~~LklAgvdv~~~~allPL~qT~~~V~~A~~ll~~gk~yeAn~aLk~Aed 178 (191)
T 3dza_A 108 KESAIQSANEKLAKGDQKGAIDTLRLAGIGVIENQYLMPLNQTRKAVAQSQELLKAGKYYEANLVLKGAEE 178 (191)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCEEEEEEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHcCCchhhhhhhCChHhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 45667899999999999999988765421 1121 234577899999999999999998888763
Done!