RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 008170
(575 letters)
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 194 bits (496), Expect = 2e-56
Identities = 61/157 (38%), Positives = 75/157 (47%), Gaps = 8/157 (5%)
Query: 68 AARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTV 127
A PL G+ IKD+ D T GS + A VV +L + GAT IGKT
Sbjct: 49 QASGPLRGIAVGIKDIIDTANMPTEMGSE--IYRGWQPRSDAPVVMMLKRAGATIIGKTT 106
Query: 128 LDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPA 187
FA NP H PGG+SSGSA AV A ++ ALGT T G V PA
Sbjct: 107 TTAFASRDPTATL------NPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRPA 160
Query: 188 SFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNA 224
++CG +PS + +GV S +LDTVGL A
Sbjct: 161 AYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARA 197
Score = 30.2 bits (69), Expect = 1.8
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 7/90 (7%)
Query: 369 KVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQ 428
++ R L + + +L+ + T + + + ++ G
Sbjct: 320 RIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTGDPRY-------NRLWTLMGNPC 372
Query: 429 VAIPIGKYNEHPISISFITYHGGDKFLLDT 458
V +P+ K PI + I G D L T
Sbjct: 373 VNVPVLKVGGLPIGVQVIARFGNDAHALAT 402
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 179 bits (456), Expect = 1e-50
Identities = 74/170 (43%), Positives = 92/170 (54%), Gaps = 10/170 (5%)
Query: 69 ARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK-RDHHEAERTAVVVTLLLKNGATCIGKTV 127
R PL GL +KD+F VKG T G+ K E A V L + GA KT
Sbjct: 61 VRGPLHGLPLTVKDLFPVKGMPTRAGT---KAPLPPLPE-EARAVRRLREAGALLFAKTN 116
Query: 128 LDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPA 187
+ E A GITGEN G N PS GGSS GSAVAVA + +LGTDT G +R+PA
Sbjct: 117 MHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPA 176
Query: 188 SFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
F G++G++PS+G VS+ G LP S+S D G L R+ A L + G
Sbjct: 177 GFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE 226
Score = 30.6 bits (70), Expect = 1.7
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 368 YKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKK----TYSAEFHDRTLVLSSIGSM 423
R +R L + L+ L++P P L T++ + + + L+ S+
Sbjct: 331 VAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSL 390
Query: 424 SGCCQVAIPIGKYNEHPISISFITYHGGDKFLL 456
G +A+P K P+ + + +G D +L
Sbjct: 391 LGVPTLALPFAKVEGMPVGLQVVGAYGEDGKVL 423
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Length = 493
Score = 177 bits (450), Expect = 3e-49
Identities = 60/201 (29%), Positives = 87/201 (43%), Gaps = 18/201 (8%)
Query: 30 VLAETLRR--RRNPKLNG--RVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFD 85
+L T+ NP++N F E A P AG+ + +KD+
Sbjct: 27 LLEATIAHVQAVNPEINAVIIPLFEKARRESE----------LASGPFAGVPYLLKDLTV 76
Query: 86 V-KGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGT 144
V +G + K + A+ A V + G +GKT E +T E + +G
Sbjct: 77 VSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGA 136
Query: 145 PVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSM 204
NP GGSS GS AVAA L A G D G VR+PAS CG++G +P+ G +S
Sbjct: 137 TRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISP 196
Query: 205 IGVLPNSQS---LDTVGLLAR 222
++ +S + GL AR
Sbjct: 197 GPLVTDSDNVAGAAHEGLFAR 217
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 173 bits (440), Expect = 1e-47
Identities = 61/178 (34%), Positives = 83/178 (46%), Gaps = 23/178 (12%)
Query: 68 AARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNG 119
+ L G + AIKD V G GF R A VVT LL G
Sbjct: 83 TSDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPS----------RDATVVTRLLAAG 132
Query: 120 ATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT 179
AT GK V ++ F + G NP GGSS GSA VA VDFA+G D
Sbjct: 133 ATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQ 192
Query: 180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
G +R+PA+FCG++G++P+ G V G P +++D +G + R A+++ V G
Sbjct: 193 GGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGR 250
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 161 bits (410), Expect = 3e-43
Identities = 70/398 (17%), Positives = 134/398 (33%), Gaps = 47/398 (11%)
Query: 72 PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
L G+ ++K+ F KG+ + G + +E VVV +L GA T + +
Sbjct: 127 LLYGVPVSLKECFSYKGHDSTLGLSLNE--GMPSESDCVVVQVLKLQGAVPFVHTNVPQS 184
Query: 132 AFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCG 191
F N +G +NP S PGGSS G + + LGTD G +R P++FCG
Sbjct: 185 MFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCG 244
Query: 192 ILGYRPSHGTVSMIGVLP----NSQSLDTVGLLARNAS---ILHRV-----------GHV 233
I G +P+ +S G+ + ++G +AR+ + +
Sbjct: 245 ICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVP 304
Query: 234 LLQLNAVEPRRARRLIFA----DDIFQLSKVPKLKTIHVISKAIESLS--GYQ-----NP 282
L R +R L D+ S P ++ + + + L G+
Sbjct: 305 PLPFREEVYRSSRPLRVGYYETDNYTMPS--PAMR--RALIETKQRLEAAGHTLIPFLPN 360
Query: 283 EHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAK 342
+ +++ G R+ + + +++ FK + +K
Sbjct: 361 NIPYALEVLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLF 420
Query: 343 PRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVI--PTVSDPPLKL 400
PRL + + + K L R ++ K + V+ P +
Sbjct: 421 PRLAA-FLNNMRPR--SAEKLWK-LQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLN 476
Query: 401 NTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNE 438
+ A + + + + +P+
Sbjct: 477 TPGRATGAVSY------TMLYNCLDFPAGVVPVTTVTA 508
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 155 bits (394), Expect = 2e-41
Identities = 64/182 (35%), Positives = 86/182 (47%), Gaps = 29/182 (15%)
Query: 69 ARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
R PL G+ +KD + T GF D A +V L GA
Sbjct: 74 LRGPLHGIPLLLKDNINAAPMATSAGSLALQGFRPDD-----------AYLVRRLRDAGA 122
Query: 121 TCIGKTVLDEFAFGITGENK-----HYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFAL 175
+GKT L E+A ++ G NP SH P GSSSGSAVAVAA L A+
Sbjct: 123 VVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAI 182
Query: 176 GTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV-- 230
GT+T G + PA+ G++G +P+ G VS G++P S S DT G +AR+ A+ +
Sbjct: 183 GTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIA 242
Query: 231 GH 232
G
Sbjct: 243 GR 244
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 471
Score = 152 bits (387), Expect = 1e-40
Identities = 68/177 (38%), Positives = 90/177 (50%), Gaps = 23/177 (12%)
Query: 69 ARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
PLAGL A+KD +G T F P A V L GA
Sbjct: 54 PGLPLAGLVVAVKDNIATRGLRTTAGSRLLENFVPP----------YEATAVARLKALGA 103
Query: 121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
+GKT LDEF G + E+ + NP P +PGGSS GSA A+AA L ALG+DT
Sbjct: 104 LVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTG 163
Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
G VR PA+FCG+ G +P++G VS G++ + SLD +G +AR+ ++L G
Sbjct: 164 GSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGP 220
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Length = 478
Score = 152 bits (386), Expect = 2e-40
Identities = 64/178 (35%), Positives = 90/178 (50%), Gaps = 23/178 (12%)
Query: 68 AARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNG 119
PL G+ A+KD V+G T F +P A V+ L K G
Sbjct: 59 ERELPLFGIPIAVKDNILVEGEKTTCASKILENFVAP----------YDATVIERLKKAG 108
Query: 120 ATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT 179
A +GKT LDEFA G + E + NP +PGGSS GSA +VA +LG+DT
Sbjct: 109 ALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDT 168
Query: 180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
G +R PASFCG++G +P++G VS G++ + SLD +G+ R +++ V G
Sbjct: 169 GGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGW 226
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structura genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1 PDB: 3al0_A*
Length = 476
Score = 151 bits (383), Expect = 5e-40
Identities = 63/178 (35%), Positives = 88/178 (49%), Gaps = 23/178 (12%)
Query: 68 AARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNG 119
+ G+ AIKD G T + S A VV + + G
Sbjct: 54 EKKGKFWGIPVAIKDNILTLGMRTTCASRILENYESV----------FDATVVKKMKEAG 103
Query: 120 ATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT 179
+GK LDEFA G + E + NP +PGGSS GSA AV+A +V ALG+DT
Sbjct: 104 FVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDT 163
Query: 180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
G VR PAS CG++GY+P++G VS G++ + SLD +G + + A+IL + G
Sbjct: 164 GGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGR 221
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Length = 485
Score = 151 bits (383), Expect = 5e-40
Identities = 64/177 (36%), Positives = 88/177 (49%), Gaps = 23/177 (12%)
Query: 69 ARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
L G+ IKD G T GF + V+ L K A
Sbjct: 67 MDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPI----------YESTVMEKLHKENA 116
Query: 121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
IGK +DEFA G + E ++ VNP +PGGSS GSA AVAA LV +LG+DT
Sbjct: 117 VLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTG 176
Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
G +R PA++CG++G +P++G VS G++ + SLD +G L RN +I+ G
Sbjct: 177 GSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGA 233
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 114 bits (288), Expect = 4e-30
Identities = 32/76 (42%), Positives = 48/76 (63%)
Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
P +G++ +E LK + N FK K + A+ +YS+AI+LN ++A YY NR+ AYL C+
Sbjct: 4 PPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY 63
Query: 540 QQAEEDCSKTISLDKK 555
A D ++ I LDKK
Sbjct: 64 GYALGDATRAIELDKK 79
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 113 bits (284), Expect = 6e-30
Identities = 30/70 (42%), Positives = 41/70 (58%)
Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545
++ LKEKGN A + A+ YSEAIKL+ + YSNR+AAY + G +Q+A ED
Sbjct: 1 MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED 60
Query: 546 CSKTISLDKK 555
KT+ L
Sbjct: 61 GCKTVDLKPD 70
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 111 bits (280), Expect = 3e-29
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+++ LKE+GN F G+++ +A Y AI N A YY+NRA YL++ +QA DC
Sbjct: 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 66
Query: 547 SKTISLDKK 555
+ + LD +
Sbjct: 67 RRALELDGQ 75
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 111 bits (279), Expect = 4e-29
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + ++K KGN F+ + +A+ +Y+EAIK N A YSNRAA Y +L FQ A +DC
Sbjct: 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC 73
Query: 547 SKTISLDKK 555
+ I L+
Sbjct: 74 EECIQLEPT 82
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 112 bits (281), Expect = 4e-29
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
P + S+ LK +GNAA K+++KA++ Y++A+ + + Y SNRAAAY G
Sbjct: 2 PRSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQH 61
Query: 540 QQAEEDCSKTISLDKK 555
++A ED +D K
Sbjct: 62 EKAAEDAELATVVDPK 77
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 110 bits (278), Expect = 4e-29
Identities = 29/71 (40%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
+E + +G F W AV Y+E IK A YSNRAAA +L F +A DC+K
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 549 TISLDKK-VRA 558
I D VRA
Sbjct: 64 AIEKDPNFVRA 74
Score = 29.6 bits (67), Expect = 1.1
Identities = 10/47 (21%), Positives = 14/47 (29%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQ 541
K A K++ A+ A + S R L QQ
Sbjct: 78 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 109 bits (276), Expect = 8e-29
Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ ++ K KGN FK + A+ +Y+EA+K + +A YSNRAA +L FQ+A +DC
Sbjct: 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDC 70
Query: 547 SKTISLDKK 555
I LD K
Sbjct: 71 DTCIRLDSK 79
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 108 bits (273), Expect = 1e-28
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
E KE+GN+ FK + +AV+ Y + I + YSN+A A ++LG + QA + C +
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 549 TISLDKK 555
+
Sbjct: 64 GLRYTST 70
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 108 bits (271), Expect = 3e-28
Identities = 28/77 (36%), Positives = 48/77 (62%)
Query: 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQ 541
+N DA+ K+ GNAA+K K + KA +Y +AI+L+ ++ T+Y+N+AA Y E F +
Sbjct: 1 SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAE 60
Query: 542 AEEDCSKTISLDKKVRA 558
+ C K + + ++ RA
Sbjct: 61 CVQFCEKAVEVGRETRA 77
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 107 bits (270), Expect = 7e-28
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+E LK +GN K + + AV++Y +AI+LN +A Y+ NRAAAY +LG + A +DC
Sbjct: 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDC 69
Query: 547 SKTISLDKK 555
+ I +D
Sbjct: 70 ERAICIDPA 78
Score = 37.6 bits (88), Expect = 0.002
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537
G A + +AV YY +A++L+ + TY SN A L+L
Sbjct: 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 107 bits (268), Expect = 1e-27
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
KE GN A+K K ++ A+ +Y +A +L+ T+ TY +N+AA Y E G + + E C K
Sbjct: 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64
Query: 550 ISLDKKVRA 558
I + ++ R
Sbjct: 65 IEVGRENRE 73
Score = 28.8 bits (65), Expect = 2.6
Identities = 8/37 (21%), Positives = 21/37 (56%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAA 531
GN+ FK +++ A+++Y++++ + T + A
Sbjct: 85 IGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 110 bits (275), Expect = 5e-27
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+++ LKE+GN F G+++ +A Y AI N A YY+NRA YL++ +QA DC
Sbjct: 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61
Query: 547 SKTISLDKK 555
+ + LD +
Sbjct: 62 RRALELDGQ 70
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 103 bits (260), Expect = 2e-26
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQA 542
+ E L+++GN FK + A+ Y++A+ L+ T A + NRAA +L+L + +A
Sbjct: 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKA 84
Query: 543 EEDCSKTISLDKK 555
E + SK I D
Sbjct: 85 ETEASKAIEKDGG 97
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 90.5 bits (225), Expect = 2e-19
Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAE 543
G++ +E LK + N FK K + A+ +YS+AI+LN ++A YY NR+ AYL C+ A
Sbjct: 1 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 60
Query: 544 EDCSKTISLDKK 555
D ++ I LDKK
Sbjct: 61 GDATRAIELDKK 72
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 84.0 bits (208), Expect = 4e-19
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 18/88 (20%)
Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAI------------------KLNGTSATYYS 527
+ + E L++KGN F K + +A++ Y +A+ +L+ + Y+
Sbjct: 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYA 67
Query: 528 NRAAAYLELGCFQQAEEDCSKTISLDKK 555
N + YL +G +AEE S+ + ++
Sbjct: 68 NMSQCYLNIGDLHEAEETSSEVLKREET 95
Score = 40.4 bits (95), Expect = 4e-04
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 498 AAFKGKQWNKAVNYYSEAIKLNGTSA-TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV 556
++A SE +K T+ + RA A + +AEED +
Sbjct: 72 CYLNIGDLHEAEETSSEVLKREETNEKALFR-RAKARIAAWKLDEAEEDLKLLLRNHPAA 130
Query: 557 RARV 560
+ V
Sbjct: 131 ASVV 134
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 88.6 bits (220), Expect = 6e-19
Identities = 18/83 (21%), Positives = 31/83 (37%)
Query: 471 NIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRA 530
+ +L S+ E E G Q A++ + A+ + + Y RA
Sbjct: 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRA 67
Query: 531 AAYLELGCFQQAEEDCSKTISLD 553
+L +G + A D +K I L
Sbjct: 68 TVFLAMGKSKAALPDLTKVIQLK 90
Score = 68.9 bits (169), Expect = 1e-12
Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY----YSNRAAAYLELGCF 539
+ L E + ++ A + Y +K + A Y + +
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311
Query: 540 QQAEEDCSKTISLD 553
+A CS+ + ++
Sbjct: 312 VEAIRVCSEVLQME 325
Score = 65.1 bits (159), Expect = 2e-11
Identities = 11/75 (14%), Positives = 30/75 (40%)
Query: 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ 540
+ + + + + K ++ +A+ SE +++ + +RA AYL +
Sbjct: 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYD 346
Query: 541 QAEEDCSKTISLDKK 555
+A +D ++
Sbjct: 347 EAIQDYETAQEHNEN 361
Score = 64.7 bits (158), Expect = 3e-11
Identities = 12/69 (17%), Positives = 27/69 (39%)
Query: 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE 544
D + L+ + AF + A+ + + +++ A RA +++ G ++A
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198
Query: 545 DCSKTISLD 553
D L
Sbjct: 199 DLKAASKLK 207
Score = 62.8 bits (153), Expect = 1e-10
Identities = 13/67 (19%), Positives = 28/67 (41%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+EL + + K + KA++ A KL + + + Y +LG + + +
Sbjct: 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234
Query: 547 SKTISLD 553
+ + LD
Sbjct: 235 RECLKLD 241
Score = 53.1 bits (128), Expect = 1e-07
Identities = 10/61 (16%), Positives = 21/61 (34%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+ + A+ ++ I+L R L+ G +AE+D K + +
Sbjct: 66 RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125
Query: 555 K 555
Sbjct: 126 S 126
Score = 44.3 bits (105), Expect = 7e-05
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D LK++ A + +++A+ Y A + N A L Q + D
Sbjct: 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK--QSQKRDY 384
Query: 547 SKTISLDK 554
K + + +
Sbjct: 385 YKILGVKR 392
Score = 41.2 bits (97), Expect = 8e-04
Identities = 7/77 (9%), Positives = 23/77 (29%), Gaps = 12/77 (15%)
Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNR------------AAAYLEL 536
+E + ++ +++ E +KL+ +++ A +
Sbjct: 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 270
Query: 537 GCFQQAEEDCSKTISLD 553
G + A + +
Sbjct: 271 GRYTDATSKYESVMKTE 287
Score = 40.4 bits (95), Expect = 0.001
Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 15/74 (20%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYS---------------NRAAAYLELGCF 539
+G+ K + ++A + + + +K N + ++A G +
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159
Query: 540 QQAEEDCSKTISLD 553
A K + +
Sbjct: 160 TAAIAFLDKILEVC 173
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 81.8 bits (203), Expect = 1e-17
Identities = 26/67 (38%), Positives = 34/67 (50%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ +E + +G F W AV Y+E IK A YSNRAAA +L F +A DC
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196
Query: 547 SKTISLD 553
+K I D
Sbjct: 197 NKAIEKD 203
Score = 72.2 bits (178), Expect = 3e-14
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
++ K +GN +K +Q+++A+ +Y++A +L+ TY +NRAAA E G ++ A +
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLND 63
Query: 549 TISLD 553
+
Sbjct: 64 AVEQG 68
Score = 57.9 bits (141), Expect = 1e-09
Identities = 11/61 (18%), Positives = 25/61 (40%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+ A K + +A+ ++AI+ + Y +A A + + + A E + D
Sbjct: 179 RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 238
Query: 555 K 555
+
Sbjct: 239 E 239
Score = 57.2 bits (139), Expect = 2e-09
Identities = 10/61 (16%), Positives = 26/61 (42%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+ A ++ ++ A++ ++A++ Y + ++ +G D KTI +
Sbjct: 44 RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103
Query: 555 K 555
K
Sbjct: 104 K 104
Score = 55.3 bits (134), Expect = 1e-08
Identities = 7/59 (11%), Positives = 15/59 (25%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+ K + K + +N A Y + A + ++ I
Sbjct: 111 TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169
Score = 49.9 bits (120), Expect = 7e-07
Identities = 5/61 (8%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+ + + + I+ S T + A +L ++ + ++
Sbjct: 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNP 136
Query: 555 K 555
+
Sbjct: 137 E 137
Score = 42.2 bits (100), Expect = 2e-04
Identities = 9/46 (19%), Positives = 13/46 (28%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ 540
K A K++ A+ A + S R L Q
Sbjct: 213 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258
Score = 33.7 bits (78), Expect = 0.11
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558
A + + F +A E +K L K +
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITY 40
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 81.5 bits (202), Expect = 7e-17
Identities = 16/64 (25%), Positives = 27/64 (42%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
E E G Q A++ + A+ + + Y RA +L +G + A D +K
Sbjct: 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 63
Query: 550 ISLD 553
I+L
Sbjct: 64 IALK 67
Score = 70.4 bits (173), Expect = 3e-13
Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY----YSNRAAAYLELGCF 539
+ L E + ++ A + Y +K + A Y + +
Sbjct: 229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP 288
Query: 540 QQAEEDCSKTISLD 553
+A CS+ + ++
Sbjct: 289 VEAIRICSEVLQME 302
Score = 65.8 bits (161), Expect = 1e-11
Identities = 13/68 (19%), Positives = 28/68 (41%)
Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545
D + L+ + AF G + A+ + + +++ A RA +++ G ++A D
Sbjct: 117 ADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 176
Query: 546 CSKTISLD 553
L
Sbjct: 177 LKAASKLK 184
Score = 62.3 bits (152), Expect = 1e-10
Identities = 11/73 (15%), Positives = 29/73 (39%)
Query: 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ 540
+ + + + + K ++ +A+ SE +++ + +RA AYL +
Sbjct: 264 EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYD 323
Query: 541 QAEEDCSKTISLD 553
+A +D +
Sbjct: 324 EAIQDYEAAQEHN 336
Score = 61.5 bits (150), Expect = 2e-10
Identities = 13/67 (19%), Positives = 28/67 (41%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+EL + + K + KA++ A KL + + + Y +LG + + +
Sbjct: 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEV 211
Query: 547 SKTISLD 553
+ + LD
Sbjct: 212 RECLKLD 218
Score = 56.5 bits (137), Expect = 9e-09
Identities = 10/61 (16%), Positives = 20/61 (32%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+ + A+ ++ I L R L+ G +AE+D K + +
Sbjct: 43 RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102
Query: 555 K 555
Sbjct: 103 S 103
Score = 43.8 bits (104), Expect = 1e-04
Identities = 10/51 (19%), Positives = 18/51 (35%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537
D LK++ A + +++A+ Y A + N A L
Sbjct: 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354
Score = 41.9 bits (99), Expect = 4e-04
Identities = 6/71 (8%), Positives = 20/71 (28%), Gaps = 12/71 (16%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNR------------AAAYLELGCFQQA 542
++ +++ E +KL+ +++ A + G + A
Sbjct: 194 ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 253
Query: 543 EEDCSKTISLD 553
+ +
Sbjct: 254 TSKYESVMKTE 264
Score = 40.3 bits (95), Expect = 0.001
Identities = 8/74 (10%), Positives = 22/74 (29%), Gaps = 15/74 (20%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNR---------------AAAYLELGCF 539
+G+ K + ++A + + + +K N + A + +
Sbjct: 77 RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY 136
Query: 540 QQAEEDCSKTISLD 553
A K + +
Sbjct: 137 TAAITFLDKILEVC 150
Score = 33.0 bits (76), Expect = 0.25
Identities = 4/31 (12%), Positives = 6/31 (19%)
Query: 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+ L G A + D
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD 33
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 78.3 bits (193), Expect = 8e-17
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 16/86 (18%)
Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAI----------------KLNGTSATYYSNR 529
+ ++ +KE+GN FK + N+A+ Y EA+ K + N
Sbjct: 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94
Query: 530 AAAYLELGCFQQAEEDCSKTISLDKK 555
A Y + + +A + SK + +DK
Sbjct: 95 ATCYNKNKDYPKAIDHASKVLKIDKN 120
Score = 43.6 bits (103), Expect = 5e-05
Identities = 13/61 (21%), Positives = 28/61 (45%)
Query: 498 AAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557
K K + KA+++ S+ +K++ + A + G ++A+E+ K SL+
Sbjct: 97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 156
Query: 558 A 558
Sbjct: 157 D 157
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 81.7 bits (202), Expect = 1e-16
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ LK+KGN F+ K+++ A+ YY+ A++L +YSN +A Y+ +G ++ E
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMS 62
Query: 547 SKTISLDKK 555
+K + L
Sbjct: 63 TKALELKPD 71
Score = 64.4 bits (157), Expect = 4e-11
Identities = 12/67 (17%), Positives = 19/67 (28%), Gaps = 1/67 (1%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ L+ G F A +AI+L Y A + +
Sbjct: 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PRVNSYIYMALIMADRNDSTEYYNYF 293
Query: 547 SKTISLD 553
K + LD
Sbjct: 294 DKALKLD 300
Score = 62.5 bits (152), Expect = 2e-10
Identities = 10/61 (16%), Positives = 23/61 (37%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
A++ +++ +SEA + + + A + F +A + I L+
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403
Query: 555 K 555
K
Sbjct: 404 K 404
Score = 62.1 bits (151), Expect = 2e-10
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 9/76 (11%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE---------LG 537
+A E+ ++KA+ Y AI+L Y A + +
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429
Query: 538 CFQQAEEDCSKTISLD 553
F +A K LD
Sbjct: 430 NFIEATNLLEKASKLD 445
Score = 59.8 bits (145), Expect = 1e-09
Identities = 10/61 (16%), Positives = 22/61 (36%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+G F + +++A + +A +L+ + Y A F E S+
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369
Query: 555 K 555
+
Sbjct: 370 E 370
Score = 59.4 bits (144), Expect = 2e-09
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+ NY+ +A+KL+ +++ Y +R L + QA +D K LD
Sbjct: 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD 334
Score = 57.8 bits (140), Expect = 6e-09
Identities = 13/54 (24%), Positives = 19/54 (35%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
K V ++A++L + RA+A LG F A D S
Sbjct: 45 LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSV 98
Score = 54.0 bits (130), Expect = 8e-08
Identities = 10/52 (19%), Positives = 20/52 (38%)
Query: 503 KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+ + +A N +A KL+ S A L+ +A ++ L +
Sbjct: 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480
Score = 52.4 bits (126), Expect = 3e-07
Identities = 11/56 (19%), Positives = 20/56 (35%)
Query: 503 KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558
+ + + ++ +E KL A + A ED K I L +V +
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNS 272
Score = 36.6 bits (85), Expect = 0.019
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQA 542
+ + ++A+ + E+ L T + E QQ
Sbjct: 455 LAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI--TFAEAAKVQQR 500
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 78.6 bits (194), Expect = 2e-15
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
+ LK +GN F K +N+A+ YY AI+L+ +YSN +A Y+ G ++ E +K
Sbjct: 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84
Query: 549 TISLDKK 555
+ +
Sbjct: 85 ALEIKPD 91
Score = 62.8 bits (153), Expect = 1e-10
Identities = 13/59 (22%), Positives = 24/59 (40%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+ + ++ +A+ LN Y +R Y L ++ A+ED K SL+
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340
Score = 62.8 bits (153), Expect = 1e-10
Identities = 8/61 (13%), Positives = 21/61 (34%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+K ++ ++ +++E T + A + G F A + L++
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409
Query: 555 K 555
Sbjct: 410 V 410
Score = 62.8 bits (153), Expect = 1e-10
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 460 LDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519
D+Y SL + L +A+ L G F A E+I L+
Sbjct: 222 TDMYHSLLSANTVDDPLRE--------NAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273
Query: 520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
T +Y A + Q+ + K + L+
Sbjct: 274 PTPNSYI-FLALTLADKENSQEFFKFFQKAVDLN 306
Score = 57.8 bits (140), Expect = 5e-09
Identities = 12/59 (20%), Positives = 23/59 (38%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+G F + + A + +A LN + Y A + G F ++E ++T
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374
Score = 55.5 bits (134), Expect = 3e-08
Identities = 11/60 (18%), Positives = 20/60 (33%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
K + + ++A+++ + RA+A LG F A D S
Sbjct: 65 ISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGD 124
Score = 54.7 bits (132), Expect = 5e-08
Identities = 11/85 (12%), Positives = 21/85 (24%), Gaps = 16/85 (18%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAA-------------- 532
E+ ++ A+ Y A +L +
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435
Query: 533 --YLELGCFQQAEEDCSKTISLDKK 555
L+ F A + +K LD +
Sbjct: 436 PTQLDEEKFNAAIKLLTKACELDPR 460
Score = 54.3 bits (131), Expect = 6e-08
Identities = 10/69 (14%), Positives = 24/69 (34%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ +++N A+ ++A +L+ S A L++ +A E
Sbjct: 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485
Query: 547 SKTISLDKK 555
+ L +
Sbjct: 486 EDSAILART 494
Score = 51.3 bits (123), Expect = 6e-07
Identities = 6/70 (8%), Positives = 18/70 (25%)
Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
L ++ ++ + L +A + A+ +
Sbjct: 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268
Query: 549 TISLDKKVRA 558
+I+L +
Sbjct: 269 SINLHPTPNS 278
Score = 42.4 bits (100), Expect = 4e-04
Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 4/53 (7%)
Query: 507 KAVNYYSEAIKLN----GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
++ L+ A NR + F +A + I LD
Sbjct: 5 NGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN 57
Score = 37.4 bits (87), Expect = 0.014
Identities = 5/48 (10%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQA 542
+ ++ ++A+ + ++ L T + E Q+
Sbjct: 468 LAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT--TFAEAAKIQKR 513
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 72.2 bits (177), Expect = 5e-14
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 15/85 (17%)
Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAI---------------KLNGTSATYYSNRA 530
++ S ++KE+G FK ++ +A+ Y + + K + N A
Sbjct: 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203
Query: 531 AAYLELGCFQQAEEDCSKTISLDKK 555
+L+L F A E C+K + LD
Sbjct: 204 MCHLKLQAFSAAIESCNKALELDSN 228
Score = 43.3 bits (102), Expect = 1e-04
Identities = 14/61 (22%), Positives = 29/61 (47%)
Query: 498 AAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557
K + ++ A+ ++A++L+ + S R A+L + F+ A D K + L +
Sbjct: 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264
Query: 558 A 558
A
Sbjct: 265 A 265
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 72.0 bits (176), Expect = 3e-13
Identities = 91/518 (17%), Positives = 144/518 (27%), Gaps = 205/518 (39%)
Query: 60 PFPQPPPPA----ARQPLAGLKFAIKDVFDVKGYVTGFGSPD--WK--RDHHEAERTAVV 111
PF + A + A L AI F G G G+ D ++ RD ++ +
Sbjct: 136 PFDKKSNSALFRAVGEGNAQL-VAI---F---G---GQGNTDDYFEELRDLYQTYHV--L 183
Query: 112 VTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNP----QMPSHIPGGSSSGSAVAVA 167
V L+K A L E K + +N + PS+ P S ++
Sbjct: 184 VGDLIKFSAE-----TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI-PIS 237
Query: 168 ------AQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLA 221
QL + + +LG+ P + G +SQ L T +A
Sbjct: 238 CPLIGVIQLAHYVV-------------TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 222 RNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQN 281
S + F + KAI L
Sbjct: 285 ETDS-------------------------WESFFVSVR-----------KAITVLF---- 304
Query: 282 PEHMNVGQYIASNVPSLKGLRAQSTSP-------------ENGTATLKALSSVMLSLQRY 328
+I G+R P EN + + S MLS+
Sbjct: 305 --------FI--------GVRCYEAYPNTSLPPSILEDSLENN----EGVPSPMLSISNL 344
Query: 329 EFKTIYEEWVKSAKPRLGYNVFERVLEAINT---TQDNIKI-LYKVRNEMRAALQRLLKD 384
+ + + + N+ ++I L N +
Sbjct: 345 TQEQV-----------------QDYVNKTNSHLPAGKQVEISLV---NGAKN-------- 376
Query: 385 DKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHP-ISI 443
LV VS PP L Y L + SG Q IP + S
Sbjct: 377 ---LV---VSGPPQSL-----YGLNLT-----LRKAKAPSGLDQSRIPFSE--RKLKFSN 418
Query: 444 SF--IT--YHGGDKFLLDTVLDLY--DSLQEQVNI-ASNL-VPLPDTNGSIDASELLKEK 495
F + +H LL DL D ++ V+ A ++ +P+ DT D S+L
Sbjct: 419 RFLPVASPFHS---HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF---DGSDLRVLS 472
Query: 496 GNAAFKGKQ--------WNKAVNYYSEAIKLNGTSATY 525
G+ + + W AT+
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQ----------FKATH 500
Score = 46.2 bits (109), Expect = 3e-05
Identities = 49/303 (16%), Positives = 90/303 (29%), Gaps = 124/303 (40%)
Query: 245 ARRLIF--ADDI------FQLSKV----PKLKTIHVISKAIESLSGYQNPEHMNVGQYIA 292
A+ ++ AD+ F + + P TIH G + G+ I
Sbjct: 1642 AQD-VWNRADNHFKDTYGFSILDIVINNPVNLTIH--------FGGEK-------GKRIR 1685
Query: 293 SNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEF--------KT------------ 332
N ++ T + T K + Y F T
Sbjct: 1686 ENYSAMIF----ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 333 -IYEEWVKSA--KPR--------LG-Y-------NVFERVLEAINTTQDNIKILYKVRNE 373
+E+ KS P LG Y +V +E +++++
Sbjct: 1742 AAFEDL-KSKGLIPADATFAGHSLGEYAALASLADVMS--IE------SLVEVVFY---- 1788
Query: 374 MRA-ALQRLLKDDK--------ILVIPTVSDPPLKLNTKKTYSAEFHDRTL--VLSSIGS 422
R +Q + D+ I + P +A F L V+ +G
Sbjct: 1789 -RGMTMQVAVPRDELGRSNYGMIAINPG------------RVAASFSQEALQYVVERVGK 1835
Query: 423 MSGC-CQVAIPIGKYNEHP--ISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPL 479
+G ++ YN + GD LDTV ++ + ++ Q I +++ L
Sbjct: 1836 RTGWLVEIV----NYNVENQQYVAA------GDLRALDTVTNVLNFIKLQ-KI--DIIEL 1882
Query: 480 PDT 482
+
Sbjct: 1883 QKS 1885
Score = 43.9 bits (103), Expect = 1e-04
Identities = 32/174 (18%), Positives = 57/174 (32%), Gaps = 57/174 (32%)
Query: 181 GCVRVPASFCGILGYRPSH--G----TVSMIGVLPNSQSLDTV---GLLARNASILHRVG 231
G + A+F G H G S+ V+ ++ V G+ + A +G
Sbjct: 1751 GLIPADATFAG-------HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 232 HVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQ----NPEHMNV 287
+ A+ P R F+ + + + + + +G+ N NV
Sbjct: 1804 RSNYGMIAINPGRV-AASFSQE-----------ALQYVVERVGKRTGWLVEIVN---YNV 1848
Query: 288 --GQYIAS----------NVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYE 329
QY+A+ NV L ++ Q + L LSL+ E
Sbjct: 1849 ENQQYVAAGDLRALDTVTNV--LNFIKLQKI-------DIIEL-QKSLSLEEVE 1892
Score = 31.6 bits (71), Expect = 0.94
Identities = 44/223 (19%), Positives = 64/223 (28%), Gaps = 98/223 (43%)
Query: 367 LYKVRNEMRAALQR---LLKDD---KILVIPTVSDPPLKL----------NTKKTYSAEF 410
LYK + R KD IL I V + P+ L ++ YSA
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDI--VINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 411 HDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLD----TVLDLYDSL 466
+ + G + + NEH S +F +K LL T
Sbjct: 1693 FETIV--------DGKLKTEKIFKEINEHSTSYTF----RSEKGLLSATQFT-------- 1732
Query: 467 QEQVNIASNLVPLPDTNGSIDASELLKEKG----NAAFKGKQWNKAVNYYS--EAIKLNG 520
Q + L+ A E LK KG +A F G +S E
Sbjct: 1733 --QPALT--LM-------EKAAFEDLKSKGLIPADATFAG---------HSLGE------ 1766
Query: 521 TSATYYSNRA----AAYLELGCFQQAEEDCSKTISLDKKVRAR 559
Y+ A A + + E + + V R
Sbjct: 1767 -----YA--ALASLADVMSI-------ES---LVEV---VFYR 1789
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 62.7 bits (153), Expect = 4e-11
Identities = 10/67 (14%), Positives = 24/67 (35%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
++ + G+ + + A+ Y + I+ T + AY + +A+
Sbjct: 106 TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165
Query: 547 SKTISLD 553
K + L
Sbjct: 166 VKVLELK 172
Score = 60.4 bits (147), Expect = 2e-10
Identities = 13/61 (21%), Positives = 20/61 (32%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G K Q + A+ Y A+ + T Y + + G F A + K I
Sbjct: 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139
Query: 555 K 555
Sbjct: 140 T 140
Score = 58.4 bits (142), Expect = 1e-09
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCS---KTIS 551
+ FK + +A+ +++ S Y+ RA Y EL + A++D ++
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68
Query: 552 LDKK 555
K
Sbjct: 69 ATKA 72
Score = 52.3 bits (126), Expect = 1e-07
Identities = 5/72 (6%), Positives = 21/72 (29%), Gaps = 3/72 (4%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNY---YSEAIKLNGTSATYYSNRAAAYLELGCFQQAE 543
++ + + ++ +++ A Y + + + ++ G A
Sbjct: 35 NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI 94
Query: 544 EDCSKTISLDKK 555
+ + D
Sbjct: 95 QQYQAAVDRDTT 106
Score = 50.7 bits (122), Expect = 4e-07
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC---FQQAEEDCSKTIS 551
G A + K++ KA + + + ++L Y RA A A+ K I
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207
Query: 552 LDKK 555
+
Sbjct: 208 VCAP 211
Score = 44.2 bits (105), Expect = 5e-05
Identities = 11/70 (15%), Positives = 19/70 (27%), Gaps = 11/70 (15%)
Query: 495 KGNAAFKGKQWNK---AVNYYSEAIKLNGTSATY--------YSNRAAAYLELGCFQQAE 543
+ A K A YY + I++ A Y +A+
Sbjct: 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241
Query: 544 EDCSKTISLD 553
++LD
Sbjct: 242 AAWKNILALD 251
Score = 38.4 bits (90), Expect = 0.004
Identities = 5/65 (7%), Positives = 13/65 (20%)
Query: 473 ASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAA 532
+ + E + + KA + + L+ T+
Sbjct: 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264
Query: 533 YLELG 537
Sbjct: 265 LEHHH 269
Score = 33.4 bits (77), Expect = 0.17
Identities = 4/34 (11%), Positives = 10/34 (29%)
Query: 522 SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
+ A + + +A E +K +
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN 35
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 61.8 bits (151), Expect = 2e-10
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + +L + F+ ++ +++ ++ + AIK N A YSN Y E G Q+A E
Sbjct: 31 DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90
Query: 547 SKTISLD 553
+ L
Sbjct: 91 RHALRLK 97
Score = 57.6 bits (140), Expect = 5e-09
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
GN + Q +A+ +Y A++L Y N AAA + G + A + + +
Sbjct: 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131
Score = 56.8 bits (138), Expect = 7e-09
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
GN + + +++AV Y A+ L+ A + N A Y E G A + + I L
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267
Score = 56.8 bits (138), Expect = 8e-09
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
NA + +A + Y+ A++L T A +N A E G ++A K + +
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335
Score = 56.4 bits (137), Expect = 1e-08
Identities = 14/59 (23%), Positives = 24/59 (40%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
++ + A++ Y AI+L Y N A A E G +AE+ + + L
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301
Score = 55.6 bits (135), Expect = 2e-08
Identities = 11/59 (18%), Positives = 22/59 (37%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
G + A++++ +A+ L+ Y N E F +A + +SL
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233
Score = 54.1 bits (131), Expect = 5e-08
Identities = 12/59 (20%), Positives = 18/59 (30%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
A AV Y A++ N S+ LG ++A+ K I
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165
Score = 53.3 bits (129), Expect = 1e-07
Identities = 14/59 (23%), Positives = 22/59 (37%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
GN + +A Y +AI+ A +SN + G A K ++LD
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199
Score = 52.5 bits (127), Expect = 2e-07
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
N + +AV Y +A+++ A +SN A+ + G Q+A + I +
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369
Score = 52.5 bits (127), Expect = 2e-07
Identities = 3/60 (5%), Positives = 19/60 (31%)
Query: 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
E + ++ + A + + + + ++ + + ++ + I +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Score = 42.1 bits (100), Expect = 3e-04
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537
+ + + +A+ +Y EAI+++ T A YSN E+
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
Score = 30.6 bits (70), Expect = 1.5
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 526 YSNRAAAYLELGCFQQAEEDCSKTISLD 553
A + G F+ AE C + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQE 29
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.3 bits (145), Expect = 1e-09
Identities = 81/521 (15%), Positives = 156/521 (29%), Gaps = 173/521 (33%)
Query: 172 DFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQS-----LDTVGLLARNASI 226
F D C V IL S + I + ++ S T LL++ +
Sbjct: 28 AFVDNFD---CKDVQDMPKSIL----SKEEIDHIIMSKDAVSGTLRLFWT--LLSKQEEM 78
Query: 227 LHRVGHVLLQLN--------AVEPRR----------ARRLIFAD-DIFQLSKVPKLKTIH 267
+ + +L++N E R+ R ++ D +F V +L+
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 268 VISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATL--KALSSVMLSL 325
+ +A+ L + + + + G G + S +
Sbjct: 139 KLRQALLELR---------PAKNVL--IDGVLGS---------GKTWVALDVCLSYKV-Q 177
Query: 326 QRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVR-----------NEM 374
+ +FK I+ W+ N E VLE + I + R + +
Sbjct: 178 CKMDFK-IF--WLNLKN----CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 375 RAALQRLLK-----------DD--------------KILVI---PTVSDPPLKLNTKKTY 406
+A L+RLLK + KIL+ V+D L T
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD-FLSAATTTHI 289
Query: 407 SAEFHDRTL-------VLSSIGSMSG------CCQVAIP-----IGK-YNEHPISISFIT 447
S + H TL +L P I + + +
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWK 348
Query: 448 YHGGDKF--LLDTVLD---------LYDSL---QEQVNIASNLVPL-----PDTNGSIDA 488
+ DK ++++ L+ ++D L +I + L+ L ++ +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 489 SELLK----EKGNAAF-----------KGKQWNKA------VNYYS--EAIKLNGTSATY 525
++L K EK K K N+ V++Y+ + + Y
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 526 YSNRAAAYL--ELGCFQQAEE-DCSKTISLD-----KKVRA 558
+++ L + E + + LD +K+R
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Score = 59.1 bits (142), Expect = 3e-09
Identities = 75/579 (12%), Positives = 155/579 (26%), Gaps = 162/579 (27%)
Query: 31 LAETLRRR-RNPKLNGRVDFGAFLERFELIPFPQPPPPAAR-QPLAGLKFAIKDVFDVKG 88
L ++ R P + + +R +R QP L+ A+ ++
Sbjct: 94 LMSPIKTEQRQPSMM-TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAK 151
Query: 89 YVT-----GFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYG 143
V G G K T V + C+ V + F I +
Sbjct: 152 NVLIDGVLGSG----K--------TWVAL-------DVCLSYKVQCKMDFKI-----FW- 186
Query: 144 TPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVS 203
+ + + S V L ++ ++ R H +
Sbjct: 187 ----------LNLKNCN-SPETVLEMLQKL--------LYQIDPNWTS----RSDHSS-- 221
Query: 204 MIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV-EPR-------RARRLIFADDIF 255
+ ++ R + LL L V + + L+
Sbjct: 222 -----NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 256 QLSKVPKLKTIHVISKAIESLSGYQNPEHMNV-GQYIASNVPSLKGLRAQSTSPENGTAT 314
+ T H+ E ++ +Y+ L +T+P
Sbjct: 277 VTDFLSAATTTHISLD--HHSMTLTPDEVKSLLLKYLDCRPQDLP-REVLTTNP------ 327
Query: 315 LKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTT------------QD 362
+ LS + S++ + ++ W +L + E L +
Sbjct: 328 -RRLSIIAESIR--DGLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 363 NIKILYKV---------RNEMRAALQRLLK--------DDKILVIPTVSDPPLKLNTKKT 405
+ I + ++++ + +L K + + IP++ L+L K
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY---LELKVKLE 440
Query: 406 YSAEFHDRTLVLSSIGSMSGCCQ---VAIPIGKYNEHPISISFITYH-----GGDKFLL- 456
H ++ + + +Y S I +H ++ L
Sbjct: 441 NEYALHRS--IVDHYNIPKTFDSDDLIPPYLDQY-----FYSHIGHHLKNIEHPERMTLF 493
Query: 457 -DTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEA 515
LD L++++ S N S L++ + +Y
Sbjct: 494 RMVFLDF-RFLEQKIRHDS-----TAWNASGSILNTLQQ--------------LKFYKPY 533
Query: 516 IKLNGTSATYYSNRAAAYLELGCF-QQAEEDCSKTISLD 553
I N Y A L+ F + EE+ + D
Sbjct: 534 ICDN---DPKYERLVNAILD---FLPKIEENLICSKYTD 566
Score = 54.5 bits (130), Expect = 8e-08
Identities = 49/441 (11%), Positives = 116/441 (26%), Gaps = 132/441 (29%)
Query: 14 NPKVWVVI-GVSVVGFVVLA-ETLRRRRNPKLNGRVDFGAF------LERFELIPFPQPP 65
P V+I GV G +A + + K+ ++DF F E +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCL---SYKVQCKMDFKIFWLNLKNCNSPETVL----- 199
Query: 66 PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCI-- 123
+ L L + I + + + + + + L K C+
Sbjct: 200 -----EMLQKLLYQID-----PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 124 -----GKTVLDEFAFG----ITGENKHYGTPVNPQMPSHIP-----GGSSSGSAVAVAAQ 169
+ F +T K ++ +HI + ++ +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 170 LVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVL----PN-SQSLDTVGLLARNA 224
+D +P P +S+I + V N
Sbjct: 310 YLD-------CRPQDLPREVLTTN---PRR--LSIIAESIRDGLATWDNWKHV-----NC 352
Query: 225 SILHRVGHVLLQLNAVEPRRARRL-----IFADDIFQLSKVPKLKTIHVISKAIESL--- 276
L + + LN +EP R++ +F +P + + +
Sbjct: 353 DKLTTI--IESSLNVLEPAEYRKMFDRLSVFPPSA----HIP--------TILLSLIWFD 398
Query: 277 SGYQNPEHMNVGQYIASNVPSLKGLRAQS---TSPENGTATLKALSSVMLS--------- 324
+ + + L S P+ T ++ ++ +
Sbjct: 399 VIKSDVMVV------------VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 325 ---LQRYEFKTIYEEWVKSAKPRLGYNVFERV---LEAINTTQ--DNIKILY-------- 368
+ Y ++ Y + + L+ I + ++++
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQY-FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 369 KVRNE-----MRAALQRLLKD 384
K+R++ ++ L+
Sbjct: 506 KIRHDSTAWNASGSILNTLQQ 526
Score = 32.9 bits (74), Expect = 0.36
Identities = 37/299 (12%), Positives = 83/299 (27%), Gaps = 87/299 (29%)
Query: 323 LSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRL- 381
+Y++K I + + + + ++I + ++ I + ++ + L RL
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-IDHIIMSKDAVSGTL-RLF 68
Query: 382 --LKDDKILVIPTVSDPPLKLNTK---KTYSAEFHDRTLVLSS-IGSMSGCCQVAIPIGK 435
L + ++ + L++N K E +++ I K
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 436 YN---EHPI-----------SISFITYHG----GDKFL-LDTVLD----------LY--- 463
YN P + G G ++ LD L ++
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 464 -------DSLQEQVN-----IASNLVPLPDTNGSI-DASELLKEKGNAAFKGKQWNKA-- 508
+++ E + I N D + +I ++ + K K +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 509 ----VNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI--SLDKKVRARVG 561
V ++A L C K + + K+V +
Sbjct: 249 VLLNV-QNAKAWN---------------AFNLSC---------KILLTTRFKQVTDFLS 282
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 57.4 bits (139), Expect = 1e-09
Identities = 10/60 (16%), Positives = 21/60 (35%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G K +A ++ +I + A Y R Y + + A +D + + +
Sbjct: 43 IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 102
Score = 54.3 bits (131), Expect = 1e-08
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
+G A K W A++ +S + + N Y L +AE+ +++I+ DK
Sbjct: 12 EGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68
Query: 555 K 555
Sbjct: 69 H 69
Score = 45.9 bits (109), Expect = 1e-05
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 16/75 (21%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIK-LNGTSATYYS---------------NRAAAYLELGC 538
+G ++ ++++ A+ EA+ L G Y N A Y +
Sbjct: 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136
Query: 539 FQQAEEDCSKTISLD 553
+++AEE + S+
Sbjct: 137 WKKAEEQLALATSMK 151
Score = 33.9 bits (78), Expect = 0.075
Identities = 9/49 (18%), Positives = 17/49 (34%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE 535
A E+L K ++W KA + A + ++A +
Sbjct: 119 FACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 167
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 55.7 bits (134), Expect = 2e-09
Identities = 10/67 (14%), Positives = 21/67 (31%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D E L ++ + A + L+ + ++ A +G + A
Sbjct: 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSY 78
Query: 547 SKTISLD 553
S +D
Sbjct: 79 SYGAVMD 85
Score = 43.0 bits (101), Expect = 5e-05
Identities = 11/59 (18%), Positives = 21/59 (35%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G Q++ A++ YS ++ + + A L+ G +AE L
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 56.5 bits (137), Expect = 6e-09
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 9/97 (9%)
Query: 462 LYDSLQEQVNIAS-----NLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAI 516
L +LQ++V +A L D A +LL E+G A N +S+A+
Sbjct: 15 LQPTLQQEVILARMEQILASRALTDDE---RA-QLLYERGVLYDSLGLRALARNDFSQAL 70
Query: 517 KLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+ ++ + G F A E + LD
Sbjct: 71 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 107
Score = 53.9 bits (130), Expect = 4e-08
Identities = 11/59 (18%), Positives = 22/59 (37%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
G + ++ A + ++L+ T + NR A G + A++D D
Sbjct: 83 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141
Score = 49.2 bits (118), Expect = 1e-06
Identities = 8/59 (13%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
GN + + + ++ L + YL LG A ++ +
Sbjct: 188 LGNISEQTL-MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245
Score = 45.4 bits (108), Expect = 2e-05
Identities = 7/54 (12%), Positives = 14/54 (25%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
G + A + A+ N + + LG Q + +
Sbjct: 221 LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
Score = 43.5 bits (103), Expect = 9e-05
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+G A + G + A + + + A +L +QA+E +
Sbjct: 117 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD-EKQAKEVLKQHFEKS 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 56.9 bits (137), Expect = 6e-09
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 17/83 (20%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAI-----------------KLNGTSATYYSNRAAA 532
+ K GN+ FK ++ +A+ Y AI + N AA
Sbjct: 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAAC 239
Query: 533 YLELGCFQQAEEDCSKTISLDKK 555
++L + +A C+ ++ ++K
Sbjct: 240 LIKLKRYDEAIGHCNIVLTEEEK 262
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 55.6 bits (135), Expect = 6e-09
Identities = 11/59 (18%), Positives = 17/59 (28%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
G K +Q A+ Y A++LN G +A + D
Sbjct: 131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD 189
Score = 55.2 bits (134), Expect = 1e-08
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+ + KA +++AI+ N A Y N A + ++A K + LD
Sbjct: 30 MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD 87
Score = 55.2 bits (134), Expect = 1e-08
Identities = 11/59 (18%), Positives = 28/59 (47%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
N + +A+ +Y +A++L+ ++AT Y Y+ +++A++ K +
Sbjct: 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG 121
Score = 54.8 bits (133), Expect = 1e-08
Identities = 7/59 (11%), Positives = 23/59 (38%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
GN + + +A + + +A++ + + ++L + A + + L+
Sbjct: 97 AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155
Score = 53.7 bits (130), Expect = 3e-08
Identities = 9/59 (15%), Positives = 21/59 (35%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
G ++A++ ++ + + A + N Y ++A E K I +
Sbjct: 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223
Score = 42.1 bits (100), Expect = 2e-04
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 507 KAVNYYSEAIKLNGTSATYYSNRAAAYL----ELGCFQQAEEDCSKTISLD 553
+ +++ + L + S + E G +++A E +K I +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN 53
Score = 38.3 bits (90), Expect = 0.004
Identities = 5/43 (11%), Positives = 10/43 (23%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537
G + KA+ +AI + +
Sbjct: 199 AGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 54.4 bits (131), Expect = 1e-08
Identities = 14/68 (20%), Positives = 27/68 (39%)
Query: 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCS 547
+S+L E A K + ++KA +Y E ++ + A + G + A
Sbjct: 53 SSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYE 112
Query: 548 KTISLDKK 555
K + L+
Sbjct: 113 KILQLEAD 120
Score = 52.1 bits (125), Expect = 8e-08
Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 496 GNAAF-KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
GN + +Q K + + + + L +++A K I
Sbjct: 129 GNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188
Query: 555 KVRAR 559
A+
Sbjct: 189 STEAQ 193
Score = 50.5 bits (121), Expect = 2e-07
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 16/80 (20%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLN----------------GTSATYYSNRAAAY 533
+ + +K +AA + Q +AV+Y+ + I LN S+ + A AY
Sbjct: 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAY 64
Query: 534 LELGCFQQAEEDCSKTISLD 553
+ + +A + +
Sbjct: 65 KKNRNYDKAYLFYKELLQKA 84
Score = 45.5 bits (108), Expect = 1e-05
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-FQQAEED 545
+ + L+ Q A+ Y + ++L + Y ++ E
Sbjct: 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLET 145
Query: 546 CSKTISLDKK 555
K +S K
Sbjct: 146 DYKKLSSPTK 155
Score = 30.9 bits (70), Expect = 0.73
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
G S + +A +E G QA +TI+L+
Sbjct: 1 GQSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN 34
Score = 29.3 bits (66), Expect = 2.4
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLN 519
G + ++ KA N + I
Sbjct: 163 DGLSKLFTTRYEKARNSLQKVILRF 187
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 52.1 bits (126), Expect = 1e-08
Identities = 9/58 (15%), Positives = 30/58 (51%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552
+G + + ++++ + +AI+L+ + Y+ + A L +++A + + I++
Sbjct: 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV 69
Score = 51.7 bits (125), Expect = 2e-08
Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKL--NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552
KG A + +++ +AV+ Y+ I + + + ++ +A A + + E L
Sbjct: 46 KGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105
Query: 553 D 553
+
Sbjct: 106 E 106
Score = 32.0 bits (74), Expect = 0.15
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 522 SATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+ Y + G + ++ + K I LD
Sbjct: 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD 36
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 53.6 bits (130), Expect = 2e-08
Identities = 9/59 (15%), Positives = 24/59 (40%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
KG + K ++++AV + + + AY++ G + E ++++
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA 72
Score = 52.1 bits (126), Expect = 5e-08
Identities = 6/59 (10%), Positives = 17/59 (28%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
G A K ++ ++ + + Y+++ + A K +
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106
Score = 50.9 bits (123), Expect = 1e-07
Identities = 12/59 (20%), Positives = 26/59 (44%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
G A ++++A++ + A+ L + A +Y ++G ++A K LD
Sbjct: 116 LGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174
Score = 50.9 bits (123), Expect = 2e-07
Identities = 10/59 (16%), Positives = 21/59 (35%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
G + ++++ AV + + N + A LG F +A + + L
Sbjct: 82 LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140
Score = 35.5 bits (83), Expect = 0.019
Identities = 6/38 (15%), Positives = 15/38 (39%)
Query: 516 IKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+ + YY ++ ++ + G + QA + D
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD 38
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 52.0 bits (126), Expect = 2e-08
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
GNA +K +++A+ YY +A++L+ SA + N AY + G + +A E K + LD
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Score = 51.6 bits (125), Expect = 3e-08
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
GNA +K +++A+ YY +A++L+ SA + N AY + G + +A E K + LD
Sbjct: 41 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99
Score = 47.8 bits (115), Expect = 7e-07
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
GNA +K +++A+ YY +A++L+ SA + N AY + G + +A E K + LD
Sbjct: 75 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
Score = 33.9 bits (79), Expect = 0.037
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
A + N AY + G + +A E K + LD
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 31
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 55.6 bits (134), Expect = 3e-08
Identities = 11/61 (18%), Positives = 27/61 (44%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G+A K K ++ A++ ++ + L+ A ++ A YL A +++++
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581
Query: 555 K 555
Sbjct: 582 N 582
Score = 55.2 bits (133), Expect = 4e-08
Identities = 9/61 (14%), Positives = 22/61 (36%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G + ++A Y+S++ ++ + A ++ G QA + L +
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438
Query: 555 K 555
Sbjct: 439 G 439
Score = 54.5 bits (131), Expect = 7e-08
Identities = 13/96 (13%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 460 LDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519
D L+ + S++ L + S+LL K + F ++ + ++ ++++
Sbjct: 282 TSHEDELRRAEDYLSSINGLEKS------SDLLLCKADTLFVRSRFIDVLAITTKILEID 335
Query: 520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
+ Y A+ E G + + + +
Sbjct: 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371
Score = 52.1 bits (125), Expect = 4e-07
Identities = 9/66 (13%), Positives = 25/66 (37%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
++ + + + NK ++ + + A + YL + +A SK+
Sbjct: 340 DVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399
Query: 550 ISLDKK 555
++D +
Sbjct: 400 STMDPQ 405
Score = 52.1 bits (125), Expect = 4e-07
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKL-------NGTSATYYSNRAAAYLELGCFQQ 541
LL E G AF A+N++ A+ L A ++N AY +L +
Sbjct: 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534
Query: 542 AEEDCSKTISLD 553
A + ++ + L
Sbjct: 535 AIDALNQGLLLS 546
Score = 50.6 bits (121), Expect = 1e-06
Identities = 10/59 (16%), Positives = 25/59 (42%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
++ + ++A++ Y+ A +L + Y +++LG A E + +L
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471
Score = 49.1 bits (117), Expect = 3e-06
Identities = 10/89 (11%), Positives = 23/89 (25%)
Query: 465 SLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT 524
+ E+ ++ L + L + + Y +I S+
Sbjct: 247 TADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSD 306
Query: 525 YYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+A F +K + +D
Sbjct: 307 LLLCKADTLFVRSRFIDVLAITTKILEID 335
Score = 46.4 bits (110), Expect = 2e-05
Identities = 9/61 (14%), Positives = 13/61 (21%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G + A Y + L + Q A + L K
Sbjct: 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506
Query: 555 K 555
K
Sbjct: 507 K 507
Score = 36.4 bits (84), Expect = 0.030
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Query: 460 LDLYDSLQEQVNIASNLVPLPDTNGSID-ASELLKEKGNAAFKGKQWNKAVNYYSEAIKL 518
L+L N L +G I + + +G +++A Y EA+ +
Sbjct: 170 LNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV 229
Query: 519 NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
+ + + +L A+E+ + L+
Sbjct: 230 DAKCYEAFDQLVSNHL-----LTADEEWDLVLKLNYS 261
Score = 33.7 bits (77), Expect = 0.20
Identities = 5/41 (12%), Positives = 11/41 (26%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE 535
K A+ + E++ ++ A E
Sbjct: 556 IALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 52.5 bits (127), Expect = 5e-08
Identities = 11/59 (18%), Positives = 22/59 (37%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
G + +++ A+ + A+K N A L+LG A E+ ++
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART 69
Score = 49.8 bits (120), Expect = 5e-07
Identities = 12/64 (18%), Positives = 27/64 (42%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
L ++ + +A++ +A ++N A + R Y LG +AE +
Sbjct: 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQA 144
Query: 550 ISLD 553
++L+
Sbjct: 145 LALE 148
Score = 46.8 bits (112), Expect = 4e-06
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+G + +KA +A+ L + S A YL +G +A +K +
Sbjct: 124 RGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQA 181
Score = 44.1 bits (105), Expect = 4e-05
Identities = 8/59 (13%), Positives = 20/59 (33%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+ ++A+ Y++A++ A+A L G ++A +
Sbjct: 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHH 215
Score = 43.7 bits (104), Expect = 6e-05
Identities = 10/70 (14%), Positives = 17/70 (24%), Gaps = 11/70 (15%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL-----------GCFQQAE 543
K N A+ + Y + AY+ L G +QA
Sbjct: 45 LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104
Query: 544 EDCSKTISLD 553
++
Sbjct: 105 SVLKDAERVN 114
Score = 29.8 bits (68), Expect = 2.1
Identities = 4/33 (12%), Positives = 9/33 (27%)
Query: 521 TSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
T+ LG + A + + +
Sbjct: 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 53.4 bits (129), Expect = 6e-08
Identities = 11/59 (18%), Positives = 24/59 (40%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
G G + +A++ Y+ A+ +N N A +Y + + A + + I +
Sbjct: 212 LGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270
Score = 50.4 bits (121), Expect = 7e-07
Identities = 6/59 (10%), Positives = 17/59 (28%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
G + ++ A+ + A L+ ++ A ++ A +
Sbjct: 61 LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 119
Score = 50.4 bits (121), Expect = 7e-07
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G ++ A A++L A ++ A Q+A + ++ + ++
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237
Query: 555 K-VRAR 559
VR
Sbjct: 238 GYVRVM 243
Score = 50.0 bits (120), Expect = 1e-06
Identities = 9/64 (14%), Positives = 17/64 (26%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
E E+G + K +A + + + + E A +
Sbjct: 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHA 81
Query: 550 ISLD 553
LD
Sbjct: 82 RMLD 85
Score = 47.7 bits (114), Expect = 5e-06
Identities = 6/59 (10%), Positives = 20/59 (33%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+ ++ + A+++N A +++ Y + A + + + L
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR 202
Score = 35.3 bits (82), Expect = 0.044
Identities = 2/74 (2%), Positives = 13/74 (17%), Gaps = 15/74 (20%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLN---------------GTSATYYSNRAAAYLELGCF 539
+ N A+ + + + +
Sbjct: 95 LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEY 154
Query: 540 QQAEEDCSKTISLD 553
++ + ++
Sbjct: 155 RECRTLLHAALEMN 168
Score = 31.9 bits (73), Expect = 0.60
Identities = 4/50 (8%), Positives = 8/50 (16%)
Query: 504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+ Y + L+L +A
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAA 51
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 50.5 bits (122), Expect = 7e-08
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
GNA +K +++A+ YY +A++L+ +A + N AY + G + +A E K + LD
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 107
Score = 50.5 bits (122), Expect = 7e-08
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
GNA +K +++A+ YY +A++L+ +A + N AY + G + +A E K + LD
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Score = 35.1 bits (82), Expect = 0.013
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537
GNA +K +++A+ YY +A++L+ +A N A + G
Sbjct: 83 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 32.8 bits (76), Expect = 0.082
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
A + N AY + G + +A E K + LD
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 39
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 53.1 bits (128), Expect = 1e-07
Identities = 16/76 (21%), Positives = 34/76 (44%)
Query: 478 PLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537
+ + LL G+ K K++ +A++Y+ +A+ L +A+ YS + +G
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG 284
Query: 538 CFQQAEEDCSKTISLD 553
F+ A + + L
Sbjct: 285 NFENAVDYFHTALGLR 300
Score = 50.8 bits (122), Expect = 6e-07
Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---------ATYYSNRAAAYLELGCF 539
++ E G AF+ +W A ++ +A++ +N +L +
Sbjct: 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252
Query: 540 QQAEEDCSKTISLD 553
+A + + + L
Sbjct: 253 AEALDYHRQALVLI 266
Score = 49.6 bits (119), Expect = 1e-06
Identities = 12/62 (19%), Positives = 17/62 (27%), Gaps = 1/62 (1%)
Query: 495 KGNAAF-KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
G G + A Y S+A L T + ++ QA L
Sbjct: 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155
Query: 554 KK 555
K
Sbjct: 156 KG 157
Score = 48.4 bits (116), Expect = 3e-06
Identities = 11/93 (11%), Positives = 27/93 (29%), Gaps = 7/93 (7%)
Query: 463 YDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS 522
Y+ E V I ++ L + +++ + + S ++ +
Sbjct: 3 YNKPSETV-IPESVDGLQEN------LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFH 55
Query: 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
A+ +EL + K + L
Sbjct: 56 ASCLPVHIGTLVELNKANELFYLSHKLVDLYPS 88
Score = 47.7 bits (114), Expect = 5e-06
Identities = 8/61 (13%), Positives = 18/61 (29%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G A ++S+A+ + + G ++ AE+ + K
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224
Query: 555 K 555
Sbjct: 225 A 225
Score = 45.7 bits (109), Expect = 2e-05
Identities = 10/59 (16%), Positives = 21/59 (35%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
G++ + ++A+ Y A +L Y + AE S+ +S+
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189
Score = 44.2 bits (105), Expect = 8e-05
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-FQQAEEDCSK 548
L + + N+ + + L ++ + YL +G + A SK
Sbjct: 57 SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSK 116
Query: 549 TISLDKK 555
+L+K
Sbjct: 117 ATTLEKT 123
Score = 37.7 bits (88), Expect = 0.009
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQA 542
G + AV+Y+ A+ L + +A
Sbjct: 276 IGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 53.1 bits (128), Expect = 1e-07
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G G + +AV Y+ A+++ N + + LG +++A + +SL +
Sbjct: 253 LGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312
Query: 555 K 555
K
Sbjct: 313 K 313
Score = 50.8 bits (122), Expect = 6e-07
Identities = 10/67 (14%), Positives = 20/67 (29%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+E + G + + A+ ++L + A +Y Q A E
Sbjct: 97 GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEAL 156
Query: 547 SKTISLD 553
I +
Sbjct: 157 KNWIKQN 163
Score = 49.7 bits (119), Expect = 1e-06
Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 3/104 (2%)
Query: 452 DKFLLDTVLDLYDSLQEQVNIASNLVPLP--DTNGSIDASELLKEKGNAAFKGKQWNKAV 509
++ + Q QV ++++ N D E+G K +
Sbjct: 27 EEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAF-EEGLKRLKEGDLPVTI 85
Query: 510 NYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+ AI + A + E Q A + + L
Sbjct: 86 LFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ 129
Score = 49.3 bits (118), Expect = 2e-06
Identities = 9/66 (13%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G ++N+A++ ++ A+ + + ++ A ++A E ++ + +
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278
Query: 555 K-VRAR 559
+R+R
Sbjct: 279 GFIRSR 284
Score = 45.8 bits (109), Expect = 3e-05
Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 2/68 (2%)
Query: 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS--ATYYSNRAAAYLELGCFQQAEED 545
+ L + + Y EA NG + + G F +A +
Sbjct: 176 SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDA 235
Query: 546 CSKTISLD 553
+ +++
Sbjct: 236 FNAALTVR 243
Score = 38.9 bits (91), Expect = 0.004
Identities = 7/58 (12%), Positives = 13/58 (22%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552
+ A IK N N+ + ++ D S +
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGV 196
Score = 28.1 bits (63), Expect = 8.9
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAY 533
G + + +AV+ + A+ L S A
Sbjct: 287 LGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAI 325
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 52.7 bits (127), Expect = 1e-07
Identities = 14/61 (22%), Positives = 26/61 (42%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G G Q +AV Y A++L N + + LG ++A E + +++ +
Sbjct: 257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316
Query: 555 K 555
K
Sbjct: 317 K 317
Score = 52.0 bits (125), Expect = 2e-07
Identities = 9/61 (14%), Positives = 20/61 (32%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
G + +Q A++ ++L + T A ++ +QA E +
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163
Query: 555 K 555
Sbjct: 164 A 164
Score = 48.9 bits (117), Expect = 2e-06
Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Query: 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQA 542
N D + E+G + AV + A++ + + E A
Sbjct: 59 NPLRDHPQPF-EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117
Query: 543 EEDCSKTISLD 553
+ + L
Sbjct: 118 ISALRRCLELK 128
Score = 48.1 bits (115), Expect = 4e-06
Identities = 8/59 (13%), Positives = 22/59 (37%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
G +++KAV+ ++ A+ + ++ A ++A + + L
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281
Score = 45.0 bits (107), Expect = 5e-05
Identities = 7/61 (11%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTS--ATYYSNRAAAYLELGCFQQAEEDCSKTISL 552
+ + + + A++L+ TS + G + +A + + +S+
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246
Query: 553 D 553
Sbjct: 247 R 247
Score = 33.9 bits (78), Expect = 0.13
Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 11/72 (15%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLN-----------GTSATYYSNRAAAYLELGCFQQAE 543
G + +AV ++ EA+ + S +S A LG
Sbjct: 291 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350
Query: 544 EDCSKTISLDKK 555
++ +S
Sbjct: 351 AADARDLSTLLT 362
Score = 30.0 bits (68), Expect = 2.0
Identities = 7/74 (9%), Positives = 17/74 (22%), Gaps = 15/74 (20%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAA---------------AYLELGCF 539
+ +A + ++ A + + L F
Sbjct: 138 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF 197
Query: 540 QQAEEDCSKTISLD 553
+ +E + LD
Sbjct: 198 LEVKELFLAAVRLD 211
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 53.0 bits (127), Expect = 1e-07
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 463 YDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFK--GKQWNKAVNYYSEAIKLNG 520
+Q V+ ++ + I++ EL E+G K G Q +A + +A++
Sbjct: 110 LSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP 169
Query: 521 TSATYYSNRAAAYLELGCF---QQAEEDCSKTISLD 553
+ + S A A L + Q A + + I L+
Sbjct: 170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205
Score = 49.6 bits (118), Expect = 2e-06
Identities = 10/53 (18%), Positives = 20/53 (37%)
Query: 503 KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
+ AV + +A + N S A+ + +++AE K S +
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366
Score = 45.7 bits (108), Expect = 3e-05
Identities = 8/53 (15%), Positives = 17/53 (32%)
Query: 501 KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+G++ + EA++ + A Y +A E K +
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277
Score = 38.8 bits (90), Expect = 0.004
Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 24/80 (30%)
Query: 500 FKGKQWNKAVNYYSEAIKLNGTS------------------------ATYYSNRAAAYLE 535
++ K +KA++++ E +K+N S + A
Sbjct: 383 YQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQEL 442
Query: 536 LGCFQQAEEDCSKTISLDKK 555
QQA+ED + +
Sbjct: 443 NEKMQQADEDSERGLESGSL 462
Score = 38.0 bits (88), Expect = 0.008
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 490 ELLKEKGNAAFKGKQWNK---AVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ----QA 542
E A+++ W A++ +AI+LN + A ++ +
Sbjct: 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEG 232
Query: 543 EEDCSKTISLD 553
E+ + +
Sbjct: 233 EKLVEEALEKA 243
Score = 37.6 bits (87), Expect = 0.010
Identities = 6/59 (10%), Positives = 20/59 (33%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545
+++L+ + + +KA+ +A++ +A + Y +
Sbjct: 245 GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRE 303
Score = 36.5 bits (84), Expect = 0.020
Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 9/69 (13%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKL---------NGTSATYYSNRAAAYLELGCFQQAEEDC 546
Q A+ +A +L S + N A Y +G +
Sbjct: 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117
Query: 547 SKTISLDKK 555
K + +K
Sbjct: 118 DKVKHVCEK 126
Score = 33.0 bits (75), Expect = 0.25
Identities = 7/64 (10%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSA----TYYSNRAAAYLELGCFQQAEEDCSKTIS 551
+ Q+ +A Y+ + T + ++ C +A + +
Sbjct: 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400
Query: 552 LDKK 555
+++K
Sbjct: 401 INQK 404
Score = 31.4 bits (71), Expect = 0.76
Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 9/85 (10%)
Query: 497 NAAFKGKQWNKAVNYYSEAIKLNGTS--ATYYSNRAAAYLELG-------CFQQAEEDCS 547
N + + + AT + A G C ++AEE
Sbjct: 23 NLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ 82
Query: 548 KTISLDKKVRARVGYVDCSMLIYLL 572
+ + ++R+ V + + + + Y +
Sbjct: 83 QEHADQAEIRSLVTWGNYAWVYYHM 107
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 49.7 bits (119), Expect = 2e-07
Identities = 11/60 (18%), Positives = 21/60 (35%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
G + +A+ YS ++ + + A +L+LG AE +L
Sbjct: 59 GACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118
Score = 30.1 bits (68), Expect = 1.0
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYS--NRAAAYLEL 536
+ + A + + A L + + RA A LE
Sbjct: 92 AAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 48.2 bits (116), Expect = 2e-07
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
GNA +K +++A+ YY +A++L+ +A + N AY + G + +A E K + LD
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Score = 35.8 bits (84), Expect = 0.004
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537
GNA +K +++A+ YY +A++L+ +A N A + G
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 31.2 bits (72), Expect = 0.18
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 526 YSNRAAAYLELGCFQQAEEDCSKTISLD 553
+ N AY + G + +A E K + LD
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELD 39
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 48.1 bits (115), Expect = 2e-07
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTS-ATYYSNRAAAYLELGCFQQAEEDCSKTISL 552
+ A+ E ++ Y AY +LG +Q+A + I L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 553 D 553
+
Sbjct: 65 N 65
Score = 35.8 bits (83), Expect = 0.005
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNR 529
E GNA K W KA+N Y AI+LN S + +
Sbjct: 33 GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARK 75
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 48.0 bits (115), Expect = 2e-07
Identities = 8/60 (13%), Positives = 22/60 (36%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
K ++A+ + E ++ + Y + Y L A + ++ I + ++
Sbjct: 14 AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73
Score = 30.3 bits (69), Expect = 0.45
Identities = 4/31 (12%), Positives = 9/31 (29%)
Query: 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
A +L+ +A + + D
Sbjct: 7 PFTRYALAQEHLKHDNASRALALFEELVETD 37
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 52.4 bits (126), Expect = 3e-07
Identities = 6/67 (8%), Positives = 16/67 (23%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ + G + + + +A L ++ L Q+
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVL 435
Query: 547 SKTISLD 553
+ L
Sbjct: 436 CQAHGLT 442
Score = 51.7 bits (124), Expect = 4e-07
Identities = 6/67 (8%), Positives = 16/67 (23%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ G + + + +A L ++ + L Q+
Sbjct: 240 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVL 299
Query: 547 SKTISLD 553
+ L
Sbjct: 300 CQAHGLT 306
Score = 51.3 bits (123), Expect = 5e-07
Identities = 6/67 (8%), Positives = 15/67 (22%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ G + + + +A L ++ L Q+
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 367
Query: 547 SKTISLD 553
+ L
Sbjct: 368 CQAHGLT 374
Score = 50.9 bits (122), Expect = 6e-07
Identities = 6/64 (9%), Positives = 15/64 (23%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
+ G + + + +A L ++ L Q+ +
Sbjct: 209 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA 268
Query: 550 ISLD 553
L
Sbjct: 269 HGLT 272
Score = 50.9 bits (122), Expect = 7e-07
Identities = 5/67 (7%), Positives = 14/67 (20%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ + + + +A L ++ L Q+
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 401
Query: 547 SKTISLD 553
+ L
Sbjct: 402 CQAHGLT 408
Score = 50.1 bits (120), Expect = 1e-06
Identities = 5/64 (7%), Positives = 14/64 (21%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
+ + + + +A L ++ L Q+ +
Sbjct: 73 VAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQA 132
Query: 550 ISLD 553
L
Sbjct: 133 HGLT 136
Score = 49.7 bits (119), Expect = 2e-06
Identities = 5/64 (7%), Positives = 13/64 (20%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
+ + + + +A L ++ L Q +
Sbjct: 107 VAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQA 166
Query: 550 ISLD 553
L
Sbjct: 167 HGLT 170
Score = 49.4 bits (118), Expect = 2e-06
Identities = 6/64 (9%), Positives = 15/64 (23%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
+ G + + + +A L ++ L Q+ +
Sbjct: 175 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA 234
Query: 550 ISLD 553
L
Sbjct: 235 HGLT 238
Score = 48.2 bits (115), Expect = 5e-06
Identities = 5/59 (8%), Positives = 13/59 (22%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+ + + +A L ++ L Q+ + L
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 340
Score = 47.8 bits (114), Expect = 6e-06
Identities = 3/67 (4%), Positives = 13/67 (19%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ + + + + +A L ++ L
Sbjct: 410 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRP 469
Query: 547 SKTISLD 553
++
Sbjct: 470 DPALAAL 476
Score = 47.8 bits (114), Expect = 7e-06
Identities = 5/67 (7%), Positives = 14/67 (20%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ + + + +A L ++ L Q+
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 197
Query: 547 SKTISLD 553
+ L
Sbjct: 198 CQAHGLT 204
Score = 39.0 bits (91), Expect = 0.004
Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 5/61 (8%)
Query: 498 AAFKGKQWNKAVNYYSEA-----IKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552
A G +AV+ + A + L ++ L Q+ + L
Sbjct: 42 AKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGL 101
Query: 553 D 553
Sbjct: 102 T 102
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 51.3 bits (123), Expect = 4e-07
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 16/95 (16%)
Query: 477 VPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAI----------------KLNG 520
V L D + + SE LK GN FK + W A+ Y++ + KL
Sbjct: 211 VDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP 270
Query: 521 TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
+ + N A L++ +Q A + C + + +D
Sbjct: 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305
Score = 35.1 bits (81), Expect = 0.057
Identities = 13/56 (23%), Positives = 23/56 (41%)
Query: 498 AAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
K W AV+ EA++++ ++ RA + L + QA D K +
Sbjct: 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 49.6 bits (119), Expect = 6e-07
Identities = 12/67 (17%), Positives = 28/67 (41%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
S + + +G+ + +A +A+K + + + RA Y L +A+E
Sbjct: 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESF 65
Query: 547 SKTISLD 553
+ +S+
Sbjct: 66 RQALSIK 72
Score = 47.3 bits (113), Expect = 4e-06
Identities = 12/65 (18%), Positives = 22/65 (33%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
KG + K Q+ A Y ++ + A + G A+ K S +
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178
Query: 555 KVRAR 559
++A
Sbjct: 179 VLQAD 183
Score = 40.7 bits (96), Expect = 5e-04
Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 501 KGKQWNKAVNYYSEAIK--LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+ + +++ Y+ +A+ T N+ + G F AE ++++
Sbjct: 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ 143
Score = 37.6 bits (88), Expect = 0.006
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAA-YLELGCFQQAEEDCSKTISLDK 554
K +KA + +A+ + SA +N L ++ K ++
Sbjct: 49 AEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPT 108
Query: 555 K 555
Sbjct: 109 Y 109
Score = 28.0 bits (63), Expect = 6.7
Identities = 11/71 (15%), Positives = 14/71 (19%), Gaps = 12/71 (16%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-----FQQAEE 544
KE Q A Y+ + A L LG A+
Sbjct: 148 PAFKELARTKMLAGQLGDADYYFKKYQSRVE-------VLQADDLLLGWKIAKALGNAQA 200
Query: 545 DCSKTISLDKK 555
L
Sbjct: 201 AYEYEAQLQAN 211
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 50.4 bits (120), Expect = 1e-06
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 487 DASELLKEKGNA-AFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545
++ L KG A +A S+A+KL ++ Y + G A
Sbjct: 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTC 159
Query: 546 CSKTISLDKKVRA 558
S ++ K +
Sbjct: 160 FSGALTHCKNKVS 172
Score = 46.9 bits (111), Expect = 1e-05
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY---YSNRAAAYLELGCFQQAEEDCS 547
L N K +A++ Y++A K++ +++ + NRA + + +A E S
Sbjct: 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFS 282
Query: 548 KTISLD 553
+ +LD
Sbjct: 283 QAAALD 288
Score = 39.2 bits (91), Expect = 0.003
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 8/70 (11%)
Query: 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYL--------ELGCFQQAEED 545
+ + + +V A++++ + AYL QQA
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243
Query: 546 CSKTISLDKK 555
++ +D+K
Sbjct: 244 YAQAEKVDRK 253
Score = 38.1 bits (88), Expect = 0.007
Identities = 8/55 (14%), Positives = 16/55 (29%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
+ + + +A+ +S+A L+ L E KT
Sbjct: 264 RATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318
Score = 36.9 bits (85), Expect = 0.015
Identities = 8/68 (11%), Positives = 17/68 (25%), Gaps = 10/68 (14%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG---------CFQQAEED 545
G +K A +S A+ + N + +L +
Sbjct: 143 LGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQ-NLSMVLRQLQTDSGDEHSRHVMDSVRQ 201
Query: 546 CSKTISLD 553
+ +D
Sbjct: 202 AKLAVQMD 209
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 48.8 bits (117), Expect = 1e-06
Identities = 11/67 (16%), Positives = 30/67 (44%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+A + + G + +A +A++++ +SA ++ A + + A+E+
Sbjct: 35 EARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEY 94
Query: 547 SKTISLD 553
K ++ D
Sbjct: 95 RKALASD 101
Score = 47.3 bits (113), Expect = 5e-06
Identities = 8/58 (13%), Positives = 21/58 (36%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
G + + K+ +A Y+ ++++LN + A + + A +
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG 205
Score = 42.3 bits (100), Expect = 2e-04
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIK--LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
G ++ K++ +A EA + L + + N L++ QA+E K++ L+
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171
Score = 40.7 bits (96), Expect = 6e-04
Identities = 7/55 (12%), Positives = 18/55 (32%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI 550
+ A Y +A+ + +A +N E +++A + +
Sbjct: 78 AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEAS 132
Score = 40.7 bits (96), Expect = 6e-04
Identities = 9/57 (15%), Positives = 20/57 (35%)
Query: 497 NAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
++ + + + K + Y YL+ G +QA+ K + +D
Sbjct: 11 SSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID 67
Score = 37.6 bits (88), Expect = 0.007
Identities = 9/64 (14%), Positives = 18/64 (28%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
+ E + +K +++ A YY + G +A A +
Sbjct: 176 SVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235
Query: 550 ISLD 553
L
Sbjct: 236 KRLY 239
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 49.4 bits (117), Expect = 2e-06
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+ + + +A+ +Y EAI+++ T A YSN E+ Q A + ++ I ++
Sbjct: 50 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107
Score = 48.3 bits (114), Expect = 5e-06
Identities = 13/58 (22%), Positives = 25/58 (43%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
N + +AV Y +A+++ A +SN A+ + G Q+A + I +
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 73
Score = 43.3 bits (101), Expect = 2e-04
Identities = 14/67 (20%), Positives = 28/67 (41%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
++ GN + + A+ Y+ AI++N A +SN A+ + + G +A
Sbjct: 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134
Query: 547 SKTISLD 553
+ L
Sbjct: 135 RTALKLK 141
Score = 30.2 bits (67), Expect = 2.1
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 522 SATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
A +N A E G ++A K + +
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF 39
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 46.3 bits (110), Expect = 3e-06
Identities = 11/66 (16%), Positives = 21/66 (31%)
Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
+ + +Q+ +A + Y+ A L T + L L +A+E
Sbjct: 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129
Query: 549 TISLDK 554
I
Sbjct: 130 VIQHSN 135
Score = 29.4 bits (66), Expect = 1.9
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL 536
G + K KA + I+ + +A +YL+
Sbjct: 110 TGQCQLRLKAPLKAKECFELVIQHSNDEKLK--IKAQSYLDA 149
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 44.2 bits (105), Expect = 7e-06
Identities = 7/60 (11%), Positives = 21/60 (35%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
G + +Q++ A+ + A+ + T + + G A + ++ +
Sbjct: 26 GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85
Score = 43.5 bits (103), Expect = 1e-05
Identities = 5/48 (10%), Positives = 8/48 (16%)
Query: 506 NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+ + Y E F A + D
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD 49
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 47.7 bits (113), Expect = 1e-05
Identities = 5/64 (7%), Positives = 14/64 (21%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
+ + + + +A L ++ L Q+ +
Sbjct: 634 VAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA 693
Query: 550 ISLD 553
L
Sbjct: 694 HGLT 697
Score = 46.9 bits (111), Expect = 2e-05
Identities = 7/67 (10%), Positives = 16/67 (23%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + G + + + +A L ++ L Q+
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 351
Query: 547 SKTISLD 553
+ L
Sbjct: 352 CQAHGLT 358
Score = 46.9 bits (111), Expect = 2e-05
Identities = 6/67 (8%), Positives = 15/67 (22%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + + + + +A L ++ L Q+
Sbjct: 258 DQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVL 317
Query: 547 SKTISLD 553
+ L
Sbjct: 318 CQAHGLT 324
Score = 46.6 bits (110), Expect = 2e-05
Identities = 5/64 (7%), Positives = 14/64 (21%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
+ + + + +A L ++ L Q+ +
Sbjct: 193 VAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQA 252
Query: 550 ISLD 553
L
Sbjct: 253 HGLP 256
Score = 46.6 bits (110), Expect = 2e-05
Identities = 5/64 (7%), Positives = 14/64 (21%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
+ + + + +A L ++ L Q+ +
Sbjct: 227 VAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQA 286
Query: 550 ISLD 553
L
Sbjct: 287 HGLT 290
Score = 45.4 bits (107), Expect = 5e-05
Identities = 6/67 (8%), Positives = 15/67 (22%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + + + + +A L ++ L Q+
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 385
Query: 547 SKTISLD 553
+ L
Sbjct: 386 CQAHGLT 392
Score = 43.9 bits (103), Expect = 1e-04
Identities = 7/67 (10%), Positives = 16/67 (23%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + G + + + +A L ++ L Q+
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 588
Query: 547 SKTISLD 553
+ L
Sbjct: 589 CQAHGLT 595
Score = 43.9 bits (103), Expect = 1e-04
Identities = 5/67 (7%), Positives = 14/67 (20%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ + + + +A L ++ L Q+
Sbjct: 461 AQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVL 520
Query: 547 SKTISLD 553
+ L
Sbjct: 521 CQAHGLT 527
Score = 43.1 bits (101), Expect = 3e-04
Identities = 7/67 (10%), Positives = 16/67 (23%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + G + + + +A L ++ L Q+
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVL 724
Query: 547 SKTISLD 553
+ L
Sbjct: 725 CQAHGLT 731
Score = 42.7 bits (100), Expect = 4e-04
Identities = 6/64 (9%), Positives = 15/64 (23%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + G + + + +A L ++ L Q+
Sbjct: 563 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVL 622
Query: 547 SKTI 550
+
Sbjct: 623 CQAH 626
Score = 41.9 bits (98), Expect = 6e-04
Identities = 6/69 (8%), Positives = 15/69 (21%)
Query: 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE 544
+ D + + + +A L ++ L Q+
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 552
Query: 545 DCSKTISLD 553
+ L
Sbjct: 553 VLCQAHGLT 561
Score = 40.4 bits (94), Expect = 0.002
Identities = 7/67 (10%), Positives = 16/67 (23%), Gaps = 1/67 (1%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + G + + + +A L ++ L Q+
Sbjct: 360 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVL 418
Query: 547 SKTISLD 553
+ L
Sbjct: 419 CQAHGLT 425
Score = 40.0 bits (93), Expect = 0.002
Identities = 6/50 (12%), Positives = 13/50 (26%)
Query: 504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+ + +A L ++ L Q+ +T L
Sbjct: 410 TVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLT 459
Score = 40.0 bits (93), Expect = 0.002
Identities = 6/67 (8%), Positives = 14/67 (20%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + + + + + L ++ L QQ
Sbjct: 427 DQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVL 486
Query: 547 SKTISLD 553
+ L
Sbjct: 487 CQAHGLT 493
Score = 39.2 bits (91), Expect = 0.004
Identities = 5/67 (7%), Positives = 15/67 (22%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+ + + + + +A L ++ L Q+
Sbjct: 699 EQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 758
Query: 547 SKTISLD 553
+ L
Sbjct: 759 CQAHGLT 765
Score = 39.2 bits (91), Expect = 0.004
Identities = 5/62 (8%), Positives = 14/62 (22%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
+ + + + +A L ++ L Q+ +
Sbjct: 602 IASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHG 661
Query: 552 LD 553
L
Sbjct: 662 LT 663
Score = 28.5 bits (63), Expect = 7.4
Identities = 7/67 (10%), Positives = 16/67 (23%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + G + + + +A L ++ L Q+
Sbjct: 733 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVL 792
Query: 547 SKTISLD 553
+ L
Sbjct: 793 CQDHGLT 799
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 47.0 bits (111), Expect = 1e-05
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 15/79 (18%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAI---------------KLNGTSATYYSNRAAAYLEL 536
+KEKG FKG ++ +AV Y + + + N A YL+L
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 537 GCFQQAEEDCSKTISLDKK 555
+ +A E C K + LD
Sbjct: 331 REYTKAVECCDKALGLDSA 349
Score = 40.4 bits (94), Expect = 0.001
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 501 KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558
K +++ KAV +A+ L+ + R A L + F+ A+ D K + ++ + +A
Sbjct: 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 45.8 bits (108), Expect = 2e-05
Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 6/75 (8%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQ 540
+A++L + K+ N A + + +A + Y + G
Sbjct: 35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94
Query: 541 QAEEDCSKTISLDKK 555
A + I +
Sbjct: 95 NAVDSLENAIQIFTH 109
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 42.4 bits (100), Expect = 4e-05
Identities = 6/60 (10%), Positives = 18/60 (30%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
G + ++ A+ + A L+ ++ A ++ A + +
Sbjct: 58 GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
Score = 42.4 bits (100), Expect = 4e-05
Identities = 8/60 (13%), Positives = 16/60 (26%)
Query: 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
E+G + K +A + + + + E A + LD
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 44.8 bits (106), Expect = 6e-05
Identities = 7/50 (14%), Positives = 16/50 (32%)
Query: 504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+ + A++ + A A L +G E + ++L
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH 53
Score = 42.9 bits (101), Expect = 3e-04
Identities = 8/67 (11%), Positives = 18/67 (26%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
E + G + ++ +A +A A + G + A
Sbjct: 55 GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAY 114
Query: 547 SKTISLD 553
++ L
Sbjct: 115 TRAHQLL 121
Score = 42.1 bits (99), Expect = 4e-04
Identities = 3/67 (4%), Positives = 9/67 (13%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
+A + L+ + +A
Sbjct: 21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80
Query: 547 SKTISLD 553
+
Sbjct: 81 QQASDAA 87
Score = 32.1 bits (73), Expect = 0.57
Identities = 8/53 (15%), Positives = 17/53 (32%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
G+A Q A Y+ A +L + L ++ + ++
Sbjct: 98 GHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ 150
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 43.3 bits (102), Expect = 1e-04
Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN------GTSATYYSNRAAAYLELGCFQ 540
A+ + A KQ +A + Y + + + +A + +L
Sbjct: 34 SAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93
Query: 541 QAEEDCSKTISL 552
+A + K +
Sbjct: 94 EAVQYIEKASVM 105
Score = 39.9 bits (93), Expect = 0.001
Identities = 8/78 (10%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN------GTSATYYSNRAAAYLELGCFQQ 541
A+EL+ + + +++++A + + T + L +
Sbjct: 154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213
Query: 542 AEEDCSKTISLDKKVRAR 559
A++ ++ S+ +
Sbjct: 214 AQKCVRESYSIPGFSGSE 231
Score = 39.1 bits (91), Expect = 0.003
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLEL 536
NG+ D + + ++ + +KAV+ Y +A + +A + +
Sbjct: 109 NGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQ 168
Query: 537 GCFQQAEEDCSKTISLDKKVRAR 559
F +A K S+ K++
Sbjct: 169 QKFDEAAASLQKEKSMYKEMENY 191
Score = 35.6 bits (82), Expect = 0.032
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 11/78 (14%)
Query: 499 AFKGKQWNKAVNYYSEAIKLNGTS-----------ATYYSNRAAAYLELGCFQQAEEDCS 547
A ++ ++A + ++A K TS A+ Y+ A A+ +QA++
Sbjct: 1 AIAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYL 60
Query: 548 KTISLDKKVRARVGYVDC 565
+ R+
Sbjct: 61 QEAEAHANNRSLFHAAKA 78
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 42.1 bits (99), Expect = 4e-04
Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 479 LPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-------NGTSATYYSNRAA 531
L I+ +E + + + KQ +++Y +A ++ N +S A
Sbjct: 133 LIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192
Query: 532 AYLELGCFQQAEEDCSKTISLDKKV 556
+L+L ++ A K S+ +
Sbjct: 193 NFLDLKQYEDAISHFQKAYSMAEAE 217
Score = 37.1 bits (86), Expect = 0.011
Identities = 6/68 (8%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
+G +++ A+ ++ +A A ++ + +Y + + + +
Sbjct: 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168
Query: 549 TISLDKKV 556
+ K+
Sbjct: 169 AYEIYKEH 176
Score = 37.1 bits (86), Expect = 0.014
Identities = 7/76 (9%), Positives = 21/76 (27%), Gaps = 6/76 (7%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
KQ+ A++++ +A + N ++ A +
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250
Query: 550 ISLDKKVRARVGYVDC 565
I++ ++
Sbjct: 251 IAVFEESNILPSLPQA 266
Score = 35.2 bits (81), Expect = 0.051
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 6/82 (7%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
G Q+ A+ Y+ AI + S Y + +LG +A E SK
Sbjct: 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG 290
Query: 550 ISLDKKVRARVGYVDCSMLIYL 571
++ +K + + L L
Sbjct: 291 MAYSQKAGDVIYLSEFEFLKSL 312
Score = 28.6 bits (64), Expect = 5.9
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 1/57 (1%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKL-NGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
+K + +KA Y+S+ + Y + L EE
Sbjct: 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFD 327
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 39.3 bits (92), Expect = 5e-04
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 507 KAVNYYSEAIKLNGTSATY---YSNRAAAYLELGCFQQAEEDCSKTISLD 553
+AV YY +AI Y + + LG +++AE + +
Sbjct: 8 QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF 57
Score = 37.4 bits (87), Expect = 0.002
Identities = 11/58 (18%), Positives = 19/58 (32%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
G+ ++ KA + +K A LG ++Q E K I+
Sbjct: 34 GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAET 91
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 41.5 bits (98), Expect = 6e-04
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCS 547
L +G K V+++ A+++ + YS AY L + +A E
Sbjct: 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71
Query: 548 KTISLDKKV 556
++L + +
Sbjct: 72 HDLTLARTI 80
Score = 38.8 bits (91), Expect = 0.004
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
GNA F + KA+ Y+ + L T A N LG F +A C +
Sbjct: 54 GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 113
Query: 550 ISLDKKVRARVG 561
+ + +++ +VG
Sbjct: 114 LDISRELNDKVG 125
Score = 36.5 bits (85), Expect = 0.020
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 22/108 (20%)
Query: 460 LDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL- 518
L L +L ++ G++ GN + + AV + + + +
Sbjct: 174 LSLVTALGDRAAQGRAF-------GNL---------GNTHYLLGNFRDAVIAHEQRLLIA 217
Query: 519 -----NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVG 561
YSN AY+ LG F+ A E KT+ L ++++ R
Sbjct: 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 265
Score = 35.7 bits (83), Expect = 0.031
Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 22/108 (20%)
Query: 460 LDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519
L L L+++ A + S+ GN + + KA++Y+ + + +
Sbjct: 254 LLLARQLKDRAVEAQSC-------YSL---------GNTYTLLQDYEKAIDYHLKHLAIA 297
Query: 520 GTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVG 561
+ AY LG QA K + + ++V + G
Sbjct: 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSG 345
Score = 33.4 bits (77), Expect = 0.17
Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 18/99 (18%)
Query: 460 LDLYDSLQEQVNIASNLVPLPDTNGSI--------DASELLKEKGNAAFKGKQWNKAVNY 511
LD+ L ++V A L L G++ AV++
Sbjct: 114 LDISRELNDKVGEARALYNL----GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169
Query: 512 YSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEE 544
Y E + L + N + LG F+ A
Sbjct: 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 208
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 39.6 bits (93), Expect = 0.001
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKL-------NGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
G W+ A + E +L ++ A L G A ++ K
Sbjct: 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132
Query: 549 TISLDKKVRARVG 561
++ ++ +V
Sbjct: 133 SLVYAQQADDQVA 145
Score = 34.2 bits (79), Expect = 0.067
Identities = 5/72 (6%), Positives = 18/72 (25%), Gaps = 6/72 (8%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
A A Y +++ + A + + +A++ +
Sbjct: 114 ATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173
Query: 550 ISLDKKVRARVG 561
+ ++
Sbjct: 174 RDIFAELEDSEA 185
Score = 32.6 bits (75), Expect = 0.21
Identities = 6/67 (8%), Positives = 15/67 (22%), Gaps = 6/67 (8%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
G ++++A + + S G + A +
Sbjct: 33 GYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEE 92
Query: 550 ISLDKKV 556
L +
Sbjct: 93 RELLASL 99
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 40.6 bits (95), Expect = 0.001
Identities = 12/85 (14%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 479 LPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-------NGTSATYYSNRAA 531
LP + I+ +E + A + KQ + ++ + +A+ + + + A
Sbjct: 131 LPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190
Query: 532 AYLELGCFQQAEEDCSKTISLDKKV 556
Y + + +A + L +
Sbjct: 191 NYDDFKHYDKALPHLEAALELAMDI 215
Score = 39.8 bits (93), Expect = 0.002
Identities = 16/114 (14%), Positives = 36/114 (31%), Gaps = 7/114 (6%)
Query: 463 YDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS 522
Y + + + + L +G F K++ +A+ YY EA K
Sbjct: 75 YGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV 134
Query: 523 ------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA-RVGYVDCSMLI 569
A ++ A AY + + + + + + + + +I
Sbjct: 135 SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188
Score = 36.3 bits (84), Expect = 0.022
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
K ++KA+ + A++L A N A +Y G Q A E K
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248
Query: 550 ISLDKK 555
+ ++
Sbjct: 249 AKVSRE 254
Score = 35.2 bits (81), Expect = 0.047
Identities = 8/67 (11%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
N+ + AV ++ +A K+ + + + + G Q+A + +
Sbjct: 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF-GLSWTLCKAGQTQKAFQFIEEG 287
Query: 550 ISLDKKV 556
+
Sbjct: 288 LDHITAR 294
Score = 34.4 bits (79), Expect = 0.10
Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI 550
L+ ++ + ++Y+ E L+ + AA + F+QA K +
Sbjct: 305 FLQAVYKETVDERKIHDLLSYF-EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363
Query: 551 SLDKKVR 557
+ +
Sbjct: 364 KAQEDIL 370
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 40.5 bits (94), Expect = 0.001
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 464 DSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA 523
+L +++ L L + S + + K +A + +++ + I L S
Sbjct: 258 AALNTEIDNIVTLPELNNL------SIIYQIKAVSALVKGKTDESYQAINTGIDLE-MSW 310
Query: 524 TYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
Y Y G ++A + +L
Sbjct: 311 LNYVLLGKVYEMKGMNREAADAYLTAFNLR 340
Score = 28.9 bits (64), Expect = 4.9
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAY 533
G +A + Y A L + T Y +
Sbjct: 317 GKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF 354
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 39.5 bits (93), Expect = 0.002
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCF 539
GS EL E G K V+++ A+++ + YS AY L +
Sbjct: 1 GSASCLELALE-GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 59
Query: 540 QQAEEDCSKTISLDKKV 556
+A E ++L + +
Sbjct: 60 AKALEYHHHDLTLARTI 76
Score = 37.2 bits (87), Expect = 0.012
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
GNA F + KA+ Y+ + L T A N LG F +A C +
Sbjct: 50 GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 109
Query: 550 ISLDKKVRARVG 561
+ + +++ +VG
Sbjct: 110 LDISRELNDKVG 121
Score = 36.1 bits (84), Expect = 0.028
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
GN + + AV + + + + YSN AY+ LG F+ A E KT
Sbjct: 190 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249
Query: 550 ISLDKKVRARVG 561
+ L ++++ R
Sbjct: 250 LLLARQLKDRAV 261
Score = 33.8 bits (78), Expect = 0.13
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
GNA ++ A YY + + L A + Y L +++A + K
Sbjct: 230 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289
Query: 550 ISLDKKVRARVG 561
+++ ++++ R+G
Sbjct: 290 LAIAQELKDRIG 301
Score = 33.4 bits (77), Expect = 0.16
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
GN + + KA++Y+ + + + + AY LG QA K
Sbjct: 270 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329
Query: 550 ISLDKKV 556
+ + ++V
Sbjct: 330 LEISREV 336
Score = 33.4 bits (77), Expect = 0.19
Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 18/99 (18%)
Query: 460 LDLYDSLQEQVNIASNLVPLPDTNGSI--------DASELLKEKGNAAFKGKQWNKAVNY 511
LD+ L ++V A L L G++ AV+
Sbjct: 110 LDISRELNDKVGEARALYNL----GNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165
Query: 512 YSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEE 544
Y E + L + N + LG F+ A
Sbjct: 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 39.2 bits (92), Expect = 0.003
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAE 543
EL E G V ++ AI+ + YS AY LG + +A
Sbjct: 48 CLELALE-GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAM 106
Query: 544 E 544
+
Sbjct: 107 Q 107
Score = 37.7 bits (88), Expect = 0.008
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
GNA F +NKA+ Y+ + L + A N +G F +A C +
Sbjct: 93 GNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERH 152
Query: 550 ISLDKKVRARVG 561
++L +++ R+
Sbjct: 153 LTLARQLGDRLS 164
Score = 35.7 bits (83), Expect = 0.034
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
GN + + A+ ++ E +++ SN +++ LG F+ A E +T
Sbjct: 230 GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289
Query: 550 ISLDKKVRARVG 561
++L ++ R
Sbjct: 290 LALAVELGEREV 301
Score = 35.4 bits (82), Expect = 0.042
Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 15/96 (15%)
Query: 460 LDLYDSLQEQVNIASNLVPLPDTNGSI-----DASELLKEKGNAAFKGKQWNKAVNYYSE 514
L L L ++++ L L G++ + +AV +Y E
Sbjct: 153 LTLARQLGDRLSEGRALYNL----GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208
Query: 515 AIKL------NGTSATYYSNRAAAYLELGCFQQAEE 544
+KL G N Y LG FQ A E
Sbjct: 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIE 244
Score = 33.8 bits (78), Expect = 0.15
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 22/91 (24%)
Query: 460 LDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519
L L L E+ A + S+ GN ++N A+ Y++ + +
Sbjct: 290 LALAVELGEREVEAQSC-------YSL---------GNTYTLLHEFNTAIEYHNRHLAIA 333
Query: 520 GTS------ATYYSNRAAAYLELGCFQQAEE 544
A + A+ +G ++A +
Sbjct: 334 QELGDRIGEARACWSLGNAHSAIGGHERALK 364
Score = 33.8 bits (78), Expect = 0.16
Identities = 3/64 (4%), Positives = 10/64 (15%), Gaps = 6/64 (9%)
Query: 504 QWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557
N + + + + G + I +
Sbjct: 23 SGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL 82
Query: 558 ARVG 561
+
Sbjct: 83 RTLS 86
Score = 33.4 bits (77), Expect = 0.18
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
GN+ Q+ A +Y + L A + Y L F A E ++
Sbjct: 270 GNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329
Query: 550 ISLDKKVRARVG 561
+++ +++ R+G
Sbjct: 330 LAIAQELGDRIG 341
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 38.1 bits (88), Expect = 0.006
Identities = 10/54 (18%), Positives = 21/54 (38%)
Query: 502 GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
K ++ +NY + I+ + + +R L Q E + ++ D K
Sbjct: 145 QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK 198
Score = 34.3 bits (78), Expect = 0.10
Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 10/92 (10%)
Query: 474 SNLVPLPDTNG-----SI----DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT 524
+++ P+P +G I ++ + ++ +A +AI+LN + T
Sbjct: 73 ADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT 132
Query: 525 YYSNRAAAYLELG-CFQQAEEDCSKTISLDKK 555
+ R L + + I K
Sbjct: 133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK 164
Score = 34.3 bits (78), Expect = 0.11
Identities = 7/65 (10%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAE------EDCSK 548
+ + K W+ + Y + +K + + + ++ R + + +
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 265
Query: 549 TISLD 553
I L
Sbjct: 266 MIKLV 270
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 37.4 bits (86), Expect = 0.008
Identities = 15/142 (10%), Positives = 40/142 (28%), Gaps = 10/142 (7%)
Query: 435 KYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKE 494
K HP F+ + + +D + E + + + D ++
Sbjct: 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI---ENA 160
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKL-------NGTSATYYSNRAAAYLELGCFQQAEEDCS 547
N + K ++ + + +K N A A ++++ +
Sbjct: 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220
Query: 548 KTISLDKKVRARVGYVDCSMLI 569
K I + ++ +
Sbjct: 221 KAIEISCRINSMALIGQLYYQR 242
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 35.7 bits (82), Expect = 0.019
Identities = 10/55 (18%), Positives = 21/55 (38%)
Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE 544
E L ++ + + + +A+N + +A LE F+ A+E
Sbjct: 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQE 61
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 35.2 bits (82), Expect = 0.023
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
GNA ++ A YY + + L A + Y L +++A + K
Sbjct: 56 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115
Query: 550 ISLDKKVRARVG 561
+++ ++++ R+G
Sbjct: 116 LAIAQELKDRIG 127
Score = 34.0 bits (79), Expect = 0.057
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT 549
GN + + AV + + + + YSN AY+ LG F+ A E KT
Sbjct: 16 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75
Query: 550 ISLDKKVRARVG 561
+ L ++++ R
Sbjct: 76 LLLARQLKDRAV 87
Score = 32.1 bits (74), Expect = 0.26
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 8/56 (14%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLN-------GTSATYYSNRAAAYLELGCFQQAEE 544
GN + + KA++Y+ + + + G + AY LG QA
Sbjct: 96 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC-WSLGNAYTALGNHDQAMH 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 34.8 bits (80), Expect = 0.029
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Query: 487 DASELLKEKGNAAF---KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAE 543
+ +EL + + +A+ L+ T A+ + QA
Sbjct: 76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAI 135
Query: 544 EDCSKTISLD 553
E K + L+
Sbjct: 136 ELWQKVMDLN 145
Score = 34.8 bits (80), Expect = 0.030
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG---CFQQAEEDCSKTISL 552
G ++ ++ Y +A++L G +A Y+ A Q K ++L
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110
Query: 553 DKK-VRAR 559
D + A
Sbjct: 111 DSNEITAL 118
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 32.6 bits (73), Expect = 0.34
Identities = 15/78 (19%), Positives = 28/78 (35%)
Query: 465 SLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT 524
+ + S +V ++ S L G+ A Q ++A +YY A +L ++
Sbjct: 128 IISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ 187
Query: 525 YYSNRAAAYLELGCFQQA 542
Y+ A G
Sbjct: 188 PYNQLAILASSKGDHLTT 205
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat
motif, helis-turn-helix, cell cycle division, mitosis,
TPR repeat; 2.50A {Homo sapiens}
Length = 167
Score = 31.6 bits (71), Expect = 0.36
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 455 LLDTVLDLYDS-LQEQVNIASNLV-----PLPDTNGSIDASELLKEKGNAAFKGKQWNKA 508
++D V D+ + L V + S+L+ P+ +LL ++ F K++ A
Sbjct: 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNA 82
Query: 509 VNYYSEAIKLN 519
V+ Y+ A++
Sbjct: 83 VSKYTMALQQK 93
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 358
Score = 31.5 bits (71), Expect = 0.80
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 437 NEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASN----LVPLPDTNG-SIDASEL 491
+ PI +SF + G L+D + + IA N + + + G + ++
Sbjct: 205 HHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQV 264
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIK 517
L+ A K + + + +A++
Sbjct: 265 LRCSKIAGVKVAEITELIL---KALE 287
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 30.2 bits (69), Expect = 1.6
Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 504 QWNKAVNYYSEAIKLNGTS--------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
++ AV +A++ + AT + A Y + ++ A + +++ +K
Sbjct: 42 RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101
Query: 556 V 556
Sbjct: 102 T 102
Score = 30.2 bits (69), Expect = 1.7
Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 504 QWNKAVNYYSEAIKLNGTS--------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
++ A N ++A+ + + A +N A Y + G +++AE C + + + +K
Sbjct: 84 KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143
Query: 556 V 556
V
Sbjct: 144 V 144
Score = 30.2 bits (69), Expect = 1.9
Identities = 7/61 (11%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 504 QWNKAVNYYSEAIKLNGTS--------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
++ +A A+++ A +N A G +++ E + + + +
Sbjct: 126 KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185
Query: 556 V 556
Sbjct: 186 K 186
Score = 29.8 bits (68), Expect = 2.6
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 504 QWNKAVNYYSEAIKLNGTS--------ATYYSNRAAAYLELGCFQQAEE 544
++ + YY A+++ T A +N A+ YL+ G F+QAE
Sbjct: 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET 216
Score = 29.0 bits (66), Expect = 3.7
Identities = 9/47 (19%), Positives = 13/47 (27%), Gaps = 6/47 (12%)
Query: 504 QWNKAVNYYSEAI--KLNGTS----ATYYSNRAAAYLELGCFQQAEE 544
+ ++ K T N A Y G F+ AE
Sbjct: 253 KQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAET 299
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 29.8 bits (68), Expect = 2.0
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 504 QWNKAVNYYSEAI----KLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
++ +A + ++A+ K G A +N A Y + G +++AE C + + + +K
Sbjct: 58 KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117
Query: 556 V 556
V
Sbjct: 118 V 118
Score = 29.8 bits (68), Expect = 2.2
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 504 QWNKAVNYYSEAIKLNGTS--------ATYYSNRAAAYLELGCFQQAEE 544
+ + YY A+++ T A +N A+ YL+ G +Q AE
Sbjct: 142 KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET 190
Score = 28.7 bits (65), Expect = 5.5
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 8/49 (16%)
Query: 504 QWNKAVNYYSEAIKLNGTS--------ATYYSNRAAAYLELGCFQQAEE 544
++ +A A+++ A +N A G ++ E
Sbjct: 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148
Score = 28.3 bits (64), Expect = 6.1
Identities = 7/47 (14%), Positives = 11/47 (23%), Gaps = 6/47 (12%)
Query: 504 QWNKAVNYYSEA--IKLNGTS----ATYYSNRAAAYLELGCFQQAEE 544
+ + Y K T + A Y G + A
Sbjct: 227 KRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHT 273
Score = 28.3 bits (64), Expect = 6.2
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 504 QWNKAVNYYSEAIKLNGTS--------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
AV +A++ + AT + A Y + +++A + +++ +K
Sbjct: 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREK 75
Query: 556 V 556
Sbjct: 76 T 76
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics,
joint center FO structural genomics, JCSG, protein
structure initiative; 2.70A {Bacteroides fragilis}
Length = 517
Score = 30.1 bits (68), Expect = 2.4
Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 35/120 (29%)
Query: 455 LLDTVLDLYDSLQ------EQV--------NIASNLVPLPDTNGSID---ASELLKEKGN 497
LLD VL + D+ + ++ A+ + LP + GS + A+ KG
Sbjct: 131 LLDKVLTMEDNWEIPRSSEKECYDFILEDLKKATEM--LPASYGSREKGRAT-----KGA 183
Query: 498 A-AFKGK------QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI 550
A A K + ++ + +E KL Y + + +D + I
Sbjct: 184 AYALKSRVELYDKRYEDVIKSCAEVYKLGYEL--VDGTTPEKYRSI--WWTTNKDNKEII 239
Score = 29.3 bits (66), Expect = 4.3
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 20/82 (24%)
Query: 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYS-------------NRAAAYLELGCF 539
+KG+ + G K ++Y + G + +S N A A LE G
Sbjct: 349 PDKGDGSLTGYNVWKWIDYDNYNYPYAGAGSPDFSTNWIILRYAEIYLNDAEARLETGDV 408
Query: 540 QQAEEDCSKTISLDKKVRARVG 561
+ A + + +R RVG
Sbjct: 409 EGARK----AV---NMIRQRVG 423
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 29.7 bits (66), Expect = 2.5
Identities = 13/93 (13%), Positives = 27/93 (29%), Gaps = 5/93 (5%)
Query: 461 DLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG 520
+ S + I + L + + + L + F + + A+ G
Sbjct: 73 EYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH-----QG 127
Query: 521 TSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
S + L+L A ++ K D
Sbjct: 128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160
>2gkp_A Hypothetical protein NMB0488; structural genomics, APC83854, PSI,
PR structure initiative; HET: MSE; 1.35A {Neisseria
meningitidis} SCOP: d.351.1.1
Length = 167
Score = 28.5 bits (63), Expect = 4.2
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 28/92 (30%)
Query: 311 GTATLKALS-SVMLSLQRYEFKTI---------YEEWVKSAKPRLGYNVFERVLEAINTT 360
GT L+AL+ S E + YE+WV LGY
Sbjct: 55 GTTVLQALANSRTFVYDSPEDQDFFDTEKIRQRYEDWVAKLCGNLGYK------------ 102
Query: 361 QDNIKILYKVRNEMRAALQRLLKDDKILVIPT 392
+ L+K N M + + + + P+
Sbjct: 103 --TRRALFK--NMMSVDIWLH--NGCLKISPS 128
>3e9l_A PRE-mRNA-processing-splicing factor 8; nucleotidyl transfer,
disease mutation, MRN splicing, nucleus, phosphoprotein,
retinitis pigmentosa; 1.95A {Homo sapiens} SCOP:
c.55.3.14
Length = 257
Score = 28.5 bits (63), Expect = 6.3
Identities = 19/124 (15%), Positives = 51/124 (41%), Gaps = 10/124 (8%)
Query: 256 QLSKVPKLKTIHVISKAIESLSGYQNPEH--------MNVGQYIASNVPSLKGLRAQSTS 307
+L ++ K KT ++ I SL + P+ ++ + + P++ ++
Sbjct: 73 RLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQL 132
Query: 308 PENGTATLKALSSVMLSLQRYEFK--TIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIK 365
P ++ ++L + +Y++W+K+ ++ +L A++ D K
Sbjct: 133 PFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAK 192
Query: 366 ILYK 369
++ K
Sbjct: 193 VILK 196
>3enb_A PRE-mRNA-processing-splicing factor 8; PRP8 domain IV, beta finger,
RNAse H, spliceosome, U5-220K, mutation, mRNA splicing,
nucleus; 1.85A {Homo sapiens} SCOP: c.55.3.14 PDB:
3lru_A
Length = 222
Score = 28.1 bits (62), Expect = 7.5
Identities = 19/124 (15%), Positives = 51/124 (41%), Gaps = 10/124 (8%)
Query: 256 QLSKVPKLKTIHVISKAIESLSGYQNPEH--------MNVGQYIASNVPSLKGLRAQSTS 307
+L ++ K KT ++ I SL + P+ ++ + + P++ ++
Sbjct: 64 RLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQL 123
Query: 308 PENGTATLKALSSVMLSLQRYEFK--TIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIK 365
P ++ ++L + +Y++W+K+ ++ +L A++ D K
Sbjct: 124 PFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAK 183
Query: 366 ILYK 369
++ K
Sbjct: 184 VILK 187
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.395
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,945,437
Number of extensions: 561775
Number of successful extensions: 2098
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1967
Number of HSP's successfully gapped: 370
Length of query: 575
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 476
Effective length of database: 3,937,614
Effective search space: 1874304264
Effective search space used: 1874304264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)