RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 008170
(575 letters)
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 177 bits (449), Expect = 6e-50
Identities = 105/479 (21%), Positives = 186/479 (38%), Gaps = 58/479 (12%)
Query: 30 VLAETLRR--RRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQ---PLAGLKFAIKDVF 84
+ +L R +P + AF+ E + + G+ AIKD
Sbjct: 25 LPQLSLETIKRLDPHVK------AFISVRE---------NVSVEKKGKFWGIPVAIKDNI 69
Query: 85 DVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGT 144
G T S + ++E+ A VV + + G +GK LDEFA G + E +
Sbjct: 70 LTLGMRTTCASRILE--NYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFP 127
Query: 145 PVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSM 204
NP +PGGSS GSA AV+A +V ALG+DT G VR PAS CG++GY+P++G VS
Sbjct: 128 TRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSR 187
Query: 205 IGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLK 264
G++ + SLD +G + + + ++ + + R + +
Sbjct: 188 YGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLSEIEEGVSGMKF 247
Query: 265 TIH--------------VISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRA--QSTSP 308
+ +A++ L + +P +K A +P
Sbjct: 248 AVPEEIYEHDIEEGVSERFEEALKLLER-------LGAKVERVKIPHIKYSVATYYVIAP 300
Query: 309 ENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINT-----TQDN 363
++ L V L R + K + E ++K+ G V R++ T +
Sbjct: 301 AEASSNLARFDGVKYGL-RIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAY 359
Query: 364 IKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSM 423
KVR ++ L +L ++ PT K+ K + + + ++
Sbjct: 360 FNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYY--LMDIFTIPANL 417
Query: 424 SGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASN-LVPLPD 481
+G +++P G N P+ + I D V + ++++ N + PLP+
Sbjct: 418 AGLPAISVPFGFSNNLPVGVQVIGRRFAD----GKVFRIARAIEKNSPYNENGMFPLPE 472
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 175 bits (444), Expect = 4e-49
Identities = 102/454 (22%), Positives = 175/454 (38%), Gaps = 37/454 (8%)
Query: 30 VLAETLRR--RRNPKLNG--RVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFD 85
V+ + +P + +D +++ + + L G+ IKD
Sbjct: 25 VVKDIYDAIEETDPTIKSFLALDKENAIKKAQELD-ELQAKDQMDGKLFGIPMGIKDNII 83
Query: 86 VKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTP 145
G T S + E T + K A IGK +DEFA G + E ++
Sbjct: 84 TNGLETTCASKMLEGFVPIYESTVMEKLH--KENAVLIGKLNMDEFAMGGSTETSYFKKT 141
Query: 146 VNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMI 205
VNP +PGGSS GSA AVAA LV +LG+DT G +R PA++CG++G +P++G VS
Sbjct: 142 VNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRF 201
Query: 206 GVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKT 265
G++ + SLD +G L RN V + + + A D ++ K K
Sbjct: 202 GLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDD-VDFTSEIGKDIKGLK 260
Query: 266 IHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQ-----------------STSP 308
+ + +V + + + V +LK L A +
Sbjct: 261 VALPK------EYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIAS 314
Query: 309 ENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNI---- 364
++ L + E ++ E + S G V R+
Sbjct: 315 SEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAY 374
Query: 365 -KILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSM 423
K KVR ++ ++ ++ ++V PT L + + L L++ ++
Sbjct: 375 YKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDL-LTTPVNL 433
Query: 424 SGCCQVAIPIGKYNEHPISISFITYHGGDKFLLD 457
+G +++P G+ N PI + FI +K L
Sbjct: 434 AGLPGISVPCGQSNGRPIGLQFIGKPFDEKTLYR 467
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 118 bits (296), Expect = 3e-29
Identities = 104/458 (22%), Positives = 167/458 (36%), Gaps = 42/458 (9%)
Query: 30 VLAETLRR-----RRNPKLNG--RVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKD 82
+ L+R R P+L ++ A E E + R PL G+ +KD
Sbjct: 26 LTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDR--ERRDGRLRGPLHGIPLLLKD 83
Query: 83 VFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG-----ITG 137
+ T GS A +V L GA +GKT L E+A I+G
Sbjct: 84 NINAAPMATSAGSLAL---QGFRPDDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISG 140
Query: 138 ENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRP 197
+ G NP SH P GSSSGSAVAVAA L A+GT+T G + PA+ G++G +P
Sbjct: 141 WSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKP 200
Query: 198 SHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQL 257
+ G VS G++P S S DT G +AR+ + V + + +P A A +
Sbjct: 201 TVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDADPATATMPGRAVYDYTA 260
Query: 258 SKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENG------ 311
P+ I L Y+ + + + +
Sbjct: 261 RLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQAATELRRAGAVVVPVELPNQGAWAEAERT 320
Query: 312 --TATLKALSSVMLSLQRYEFKT---IYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKI 366
KA + R ++ + +K LG E ++EA T
Sbjct: 321 LLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGLADPA 380
Query: 367 LYKVRNEMRAALQRLLKDDK-------ILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSS 419
+ R++ R D LV PT + + E S
Sbjct: 381 YIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGDDFPGES-------YS 433
Query: 420 IGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLD 457
+++G + +P+G+ + P+ + F+ + L++
Sbjct: 434 AAAVAGYPSLTVPMGQIDGLPVGLLFMGTAWSEPKLIE 471
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 102 bits (253), Expect = 6e-24
Identities = 90/431 (20%), Positives = 146/431 (33%), Gaps = 51/431 (11%)
Query: 30 VLAETLRR--RRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVK 87
+A++ R +++ AF+ + A PL G+ IKD+ D
Sbjct: 21 AIAQSHAAIEAREKEVH------AFVRHDKSAR------AQASGPLRGIAVGIKDIIDTA 68
Query: 88 GYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVN 147
T GS ++ + A VV +L + GAT IGKT FA +N
Sbjct: 69 NMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFASR------DPTATLN 120
Query: 148 PQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGV 207
P H PGGSSSGSA AV A ++ ALGT T G V PA++CG +PS + +GV
Sbjct: 121 PHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGV 180
Query: 208 LPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIH 267
S +LDTVGL A L R + + + +
Sbjct: 181 KCYSWALDTVGLFGARAEDLARGLLAMTG--------------RSEFSGIVPAKAPRIGV 226
Query: 268 VISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQR 327
V + ++ + S++ + E
Sbjct: 227 VRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHRALA 286
Query: 328 YEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKI 387
+EF ++E + + + T ++ R L + + +
Sbjct: 287 WEFSEHHDEIA--------PMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDV 338
Query: 388 LVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFIT 447
L+ + T ++ + ++ G V +P+ K PI + I
Sbjct: 339 LLTYSAPGTAPAKALASTGDPRYNR-------LWTLMGNPCVNVPVLKVGGLPIGVQVIA 391
Query: 448 YHGGDKFLLDT 458
G D L T
Sbjct: 392 RFGNDAHALAT 402
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 96.3 bits (238), Expect = 1e-21
Identities = 80/490 (16%), Positives = 142/490 (28%), Gaps = 86/490 (17%)
Query: 30 VLAETLRR--RRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQ--------PLAGLKFA 79
V L + N N Q L G+ +
Sbjct: 60 VFFTYLGKAWEVNKGTN------CVTSYL---------TDCETQLSQAPRQGLLYGVPVS 104
Query: 80 IKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGEN 139
+K+ F KG+ + G + +E VVV +L GA T + + N
Sbjct: 105 LKECFSYKGHDSTLGLSLNE--GMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSN 162
Query: 140 KHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSH 199
+G +NP S PGGSS G + + LGTD G +R P++FCGI G +P+
Sbjct: 163 PLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTG 222
Query: 200 GTVSMIGVLP----NSQSLDTVGLLARNASILHRVGHVLL------QLNAVEPRRARRLI 249
+S G+ + ++G +AR+ L LL V P R +
Sbjct: 223 NRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEV 282
Query: 250 FADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVP-----SLKGLRAQ 304
+ + + S A+ G + +P +L+ L A
Sbjct: 283 YRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSAG 342
Query: 305 STSPENGTATL--KALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQD 362
+ G + L V L W K L +F R+ +N+ +
Sbjct: 343 GLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNSMRP 402
Query: 363 NIKILY----KVRNEMRAALQRLLKDDKILVI--PTVSDPPLKLNTKKTYSAEFHDRTLV 416
R ++ K + V+ P + + A +
Sbjct: 403 RSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRATGA------IS 456
Query: 417 LSSIGSMSGCCQVAIPIGKYNEH------------------------------PISISFI 446
+ + + +P+ P+++ +
Sbjct: 457 YTVLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCV 516
Query: 447 TYHGGDKFLL 456
++ L
Sbjct: 517 ALPWQEELCL 526
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 201
Score = 60.0 bits (144), Expect = 5e-11
Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 34/102 (33%)
Query: 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNR------------------ 529
+++ LKE+GN F G+++ +A Y AI N A YY+NR
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 530 ----------------AAAYLELGCFQQAEEDCSKTISLDKK 555
LE+ + +A + + SL K+
Sbjct: 63 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 60.1 bits (144), Expect = 3e-10
Identities = 3/64 (4%), Positives = 19/64 (29%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
E + ++ + A + + + + ++ + + ++ + I
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 552 LDKK 555
+
Sbjct: 62 QNPL 65
Score = 55.1 bits (131), Expect = 1e-08
Identities = 13/60 (21%), Positives = 25/60 (41%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
N + +AV Y +A+++ A +SN A+ + G Q+A + I +
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371
Score = 45.4 bits (106), Expect = 1e-05
Identities = 11/51 (21%), Positives = 23/51 (45%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537
+ + + + + +A+ +Y EAI+++ T A YSN E+
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
Score = 42.4 bits (98), Expect = 1e-04
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
D + +L + F+ ++ +++ ++ + AIK N A YSN Y E G Q+A E
Sbjct: 31 DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 52.6 bits (125), Expect = 5e-09
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
KE GN A+K K ++ A+ +Y +A +L+ T+ TY +N+AA Y E G + + E C K I
Sbjct: 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66
Query: 552 LDKK 555
+ ++
Sbjct: 67 VGRE 70
Score = 28.7 bits (63), Expect = 0.96
Identities = 8/37 (21%), Positives = 21/37 (56%)
Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAA 531
GN+ FK +++ A+++Y++++ + T + A
Sbjct: 85 IGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 54.0 bits (128), Expect = 2e-08
Identities = 9/69 (13%), Positives = 19/69 (27%), Gaps = 1/69 (1%)
Query: 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQA 542
N D + E+G + AV + A++ + + E A
Sbjct: 14 NPLRDHPQPF-EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 72
Query: 543 EEDCSKTIS 551
+ +
Sbjct: 73 ISALRRCLE 81
Score = 31.7 bits (70), Expect = 0.21
Identities = 10/71 (14%), Positives = 21/71 (29%), Gaps = 11/71 (15%)
Query: 497 NAAFKGKQWNKAVNYYSEAIKLN-----------GTSATYYSNRAAAYLELGCFQQAEED 545
+ +AV ++ EA+ + S +S A LG
Sbjct: 248 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307
Query: 546 CSKTISLDKKV 556
++ +S +
Sbjct: 308 DARDLSTLLTM 318
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2,
p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 50.6 bits (120), Expect = 8e-08
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
L +G A K W A++ +S + + N Y L +AE+ +++I+
Sbjct: 8 LWNEGVLAADKKDWKGALDAFSAVQDPH---SRICFNIGCMYTILKNMTEAEKAFTRSIN 64
Query: 552 L 552
Sbjct: 65 R 65
Score = 38.7 bits (89), Expect = 7e-04
Identities = 10/60 (16%), Positives = 24/60 (40%)
Query: 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
+ A + N+ ++Y ++ + N A Y + +++AEE + S+
Sbjct: 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150
Score = 33.3 bits (75), Expect = 0.052
Identities = 11/67 (16%), Positives = 23/67 (34%)
Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
S + G K +A ++ +I + A Y R Y + + A +D +
Sbjct: 36 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKE 95
Query: 549 TISLDKK 555
+ +
Sbjct: 96 ALIQLRG 102
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 159
Score = 47.4 bits (111), Expect = 6e-07
Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 35/125 (28%)
Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYS-------------------------- 513
P +G++ +E LK + N FK K + A+ +YS
Sbjct: 1 PPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY 60
Query: 514 --------EAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK-VRARVGYVD 564
AI+L+ Y RAA+ + LG F+ A D + + A++ Y +
Sbjct: 61 GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 120
Query: 565 CSMLI 569
C+ ++
Sbjct: 121 CNKIV 125
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 264
Score = 48.5 bits (115), Expect = 7e-07
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
A Q +A+ EAIK + A+ S+ G F++A+E ++I L
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 60
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium
tepidum [TaxId: 1097]}
Length = 156
Score = 46.3 bits (108), Expect = 1e-06
Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 16/81 (19%)
Query: 478 PLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN------------GTSATY 525
PL + + + L ++++A A++++ G A
Sbjct: 2 PLKE----VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFC 57
Query: 526 YSNRAAAYLELGCFQQAEEDC 546
++ A A L F +A
Sbjct: 58 HAGLAEALAGLRSFDEALHSA 78
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl
isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}
Length = 153
Score = 45.4 bits (106), Expect = 2e-06
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 16/77 (20%)
Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSE----------------AIKLNGTSATYYSNR 529
+ ++ +KE+GN FK + N+A+ Y E K + N
Sbjct: 14 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 73
Query: 530 AAAYLELGCFQQAEEDC 546
A Y + + +A +
Sbjct: 74 ATCYNKNKDYPKAIDHA 90
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 290
Score = 45.7 bits (107), Expect = 6e-06
Identities = 10/90 (11%), Positives = 24/90 (26%), Gaps = 6/90 (6%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQ 540
+A++L + K+ N A + + +A + Y + G
Sbjct: 35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94
Query: 541 QAEEDCSKTISLDKKVRARVGYVDCSMLIY 570
A + I + + +
Sbjct: 95 NAVDSLENAIQIFTHRGQFRRGANFKFELG 124
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 168
Score = 44.2 bits (103), Expect = 8e-06
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 15/85 (17%)
Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL---------------NGTSATYYSNRA 530
++ + ++KEKG FKG ++ +AV Y + + + N A
Sbjct: 12 LEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 71
Query: 531 AAYLELGCFQQAEEDCSKTISLDKK 555
YL+L + +A E C K + LD
Sbjct: 72 MCYLKLREYTKAVECCDKALGLDSA 96
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 42.7 bits (99), Expect = 1e-05
Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 34/103 (33%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRA---------------- 530
+ LKEKGN A + A+ YSEAIKL+ + YSNR+
Sbjct: 1 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 60
Query: 531 ------------------AAYLELGCFQQAEEDCSKTISLDKK 555
AA L F++A+ + + +
Sbjct: 61 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 103
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 43.5 bits (101), Expect = 2e-05
Identities = 10/51 (19%), Positives = 25/51 (49%)
Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL 536
++ S ++KE+G FK ++ +A+ Y + + +++ + A L
Sbjct: 10 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 60
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase
alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 315
Score = 42.2 bits (98), Expect = 1e-04
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 14/104 (13%)
Query: 462 LYDSLQEQVNIASNLVPLPDTNGS-----IDASELLKE----KGNAAFKGKQWNKAVNYY 512
LY E +++ P+P +G I S+ ++ + ++ +A
Sbjct: 11 LYRDRAE----WADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLT 66
Query: 513 SEAIKLNGTSATYYSNRAAAYLELG-CFQQAEEDCSKTISLDKK 555
+AI+LN + T + R L + + I K
Sbjct: 67 RDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK 110
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus)
[TaxId: 9913]}
Length = 169
Score = 40.4 bits (93), Expect = 1e-04
Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 21/102 (20%)
Query: 461 DLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEA----- 515
D + E ++ L D + + SE LK GN FK + W A+ Y++
Sbjct: 4 DSHPDFPEDADVD-----LKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE 58
Query: 516 -----------IKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
KL + + N A L++ +Q A + C
Sbjct: 59 GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSC 100
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase
alpha-subunit, N-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 334
Score = 40.8 bits (94), Expect = 3e-04
Identities = 7/60 (11%), Positives = 18/60 (30%)
Query: 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE 544
+ + A + + Y+S ++ A Y + + +L + E
Sbjct: 272 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY 331
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 40.9 bits (95), Expect = 3e-04
Identities = 14/69 (20%), Positives = 26/69 (37%)
Query: 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE 544
S L G+ A Q ++A +YY A +L ++ Y+ A G
Sbjct: 148 SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIF 207
Query: 545 DCSKTISLD 553
++I++
Sbjct: 208 YYCRSIAVK 216
Score = 39.0 bits (90), Expect = 0.001
Identities = 7/48 (14%), Positives = 12/48 (25%), Gaps = 3/48 (6%)
Query: 506 NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
++ Y +A L A + Q K + D
Sbjct: 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD 47
Score = 26.7 bits (58), Expect = 9.9
Identities = 6/49 (12%), Positives = 13/49 (26%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE 544
A + YY +I + +N A + + +
Sbjct: 193 AILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK 241
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC)
{Helicobacter pylori [TaxId: 210]}
Length = 265
Score = 34.5 bits (77), Expect = 0.028
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE 535
D EL+ G ++K K + +A Y+ +A L S + N Y +
Sbjct: 1 DPKELV-GLGAKSYKEKDFTQAKKYFEKACDLKENSGCF--NLGVLYYQ 46
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId:
562]}
Length = 259
Score = 34.0 bits (76), Expect = 0.036
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Query: 462 LYDSLQEQVNIA--SNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519
L +LQ++V +A ++ A +LL E+G A N +S+A+ +
Sbjct: 9 LQPTLQQEVILARMEQILASRALTDDERA-QLLYERGVLYDSLGLRALARNDFSQALAIR 67
Query: 520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
++ + G F A E + LD
Sbjct: 68 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 103
Score = 32.9 bits (73), Expect = 0.077
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 3/55 (5%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQ 541
SE G + A + A+ N + + A LEL Q
Sbjct: 207 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRY---ALLELSLLGQ 258
>d2gkpa1 d.351.1.1 (A:1-164) Hypothetical protein NMB0488 {Neisseria
meningitidis [TaxId: 487]}
Length = 164
Score = 29.8 bits (67), Expect = 0.57
Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 36/130 (27%)
Query: 273 IESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALS-SVMLSLQRYEFK 331
I++ SG+ G+Y ++ L + + GT L+AL+ S E +
Sbjct: 22 IQTWSGF--------GRYAPDHLYPPHILPLDTDNETLGTTVLQALANSRTFVYDSPEDQ 73
Query: 332 TI---------YEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLL 382
YE+WV LGY + L+K N M +
Sbjct: 74 DFFDTEKIRQRYEDWVAKLCGNLGYK--------------TRRALFK--NMMSVDIWLH- 116
Query: 383 KDDKILVIPT 392
+ + + P+
Sbjct: 117 -NGCLKISPS 125
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 28.1 bits (62), Expect = 1.1
Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 463 YDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS 522
D +++ + + L+P D L ++ K++ KA+ Y ++ +
Sbjct: 49 NDDIRKGIVLLEELLPKGSKEEQRDYVFYL---AVGNYRLKEYEKALKYVRGLLQTEPQN 105
Query: 523 ATYYSNRAAAY 533
Sbjct: 106 NQAKELERLID 116
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III
{Escherichia coli [TaxId: 562]}
Length = 366
Score = 28.7 bits (62), Expect = 1.8
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 514 EAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
+ I+ + A + + RA + G +AE +
Sbjct: 3 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP 44
>d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 418
Score = 28.9 bits (64), Expect = 2.0
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 2/68 (2%)
Query: 329 EFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKIL 388
+ I +EW + PR E + Q ++ + + L L D + +
Sbjct: 9 SAEQIQQEWDTN--PRWKDVTRTYSAEDVVALQGSVVEEHTLARRGAEVLWEQLHDLEWV 66
Query: 389 VIPTVSDP 396
Sbjct: 67 NALGALTG 74
>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel
(Mytilus edulis) [TaxId: 6550]}
Length = 275
Score = 28.6 bits (63), Expect = 2.0
Identities = 3/24 (12%), Positives = 9/24 (37%)
Query: 373 EMRAALQRLLKDDKILVIPTVSDP 396
+ L+++L + I +
Sbjct: 3 KKTTQLKQMLNSKDLEFIMEAHNG 26
>d2nn6a2 d.101.1.1 (A:185-302) Exosome complex exonuclease RRP45
{Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 27.2 bits (60), Expect = 2.9
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 437 NEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASN 475
+ PI +SF + G L+D + + IA N
Sbjct: 4 HHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMN 42
>d1xqga_ e.1.1.1 (A:) Maspin {Human (Homo sapiens) [TaxId: 9606]}
Length = 378
Score = 27.1 bits (59), Expect = 6.0
Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 3/91 (3%)
Query: 177 TDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQ 236
T + + I+ + +SM +LP ++ GL + L Q
Sbjct: 204 EATFSMGNIDSINSKIIELPFQNKHLSMFILLPKDVEDESTGLEKIEKQLN---SESLSQ 260
Query: 237 LNAVEPRRARRLIFADDIFQLSKVPKLKTIH 267
++ + F++ K+ K
Sbjct: 261 WTNPSTMANAKVKLSIPKFKVEKMIDPKASL 291
>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 341
Score = 26.8 bits (58), Expect = 8.4
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 1 MSKSFNIIKTNTSNPKVWVVIGVSVVGFV--VLAETLRRR 38
MS+ + K + PKVW++ GV+ GF+ L ETL +
Sbjct: 2 MSRYEELRKELPAQPKVWLITGVA--GFIGSNLLETLLKL 39
>d1dhsa_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 361
Score = 26.7 bits (59), Expect = 9.0
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 466 LQEQVNIASNLVPL--PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIK 517
L+ + + D N ++ LL+ G F+ + +AV + I+
Sbjct: 10 LKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFGRAVQQVNAMIE 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.395
Gapped
Lambda K H
0.267 0.0609 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,126,106
Number of extensions: 100875
Number of successful extensions: 320
Number of sequences better than 10.0: 1
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 46
Length of query: 575
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 485
Effective length of database: 1,171,896
Effective search space: 568369560
Effective search space used: 568369560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)