Query 008172
Match_columns 575
No_of_seqs 192 out of 1519
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 20:24:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02762 pyruvate kinase compl 100.0 1E-139 3E-144 1137.0 58.7 502 69-575 5-509 (509)
2 PTZ00066 pyruvate kinase; Prov 100.0 3E-135 6E-140 1102.2 57.5 476 86-575 35-513 (513)
3 PRK09206 pyruvate kinase; Prov 100.0 1E-132 3E-137 1077.1 56.5 470 88-574 1-470 (470)
4 COG0469 PykF Pyruvate kinase [ 100.0 3E-132 7E-137 1067.6 54.2 473 86-574 2-477 (477)
5 PLN02461 Probable pyruvate kin 100.0 5E-131 1E-135 1070.4 55.9 470 87-574 19-510 (511)
6 PRK06247 pyruvate kinase; Prov 100.0 6E-131 1E-135 1062.9 55.5 469 86-575 2-471 (476)
7 PLN02765 pyruvate kinase 100.0 2E-129 4E-134 1058.2 56.6 468 89-575 28-525 (526)
8 PRK06354 pyruvate kinase; Prov 100.0 9E-129 2E-133 1073.4 56.7 470 87-574 6-478 (590)
9 cd00288 Pyruvate_Kinase Pyruva 100.0 3E-128 7E-133 1048.4 56.2 473 88-574 1-480 (480)
10 PRK05826 pyruvate kinase; Prov 100.0 9E-127 2E-131 1033.6 55.9 458 87-558 2-460 (465)
11 PLN02623 pyruvate kinase 100.0 1E-123 2E-128 1019.7 55.4 470 86-575 107-580 (581)
12 PTZ00300 pyruvate kinase; Prov 100.0 2E-121 3E-126 987.2 54.0 445 115-574 1-453 (454)
13 TIGR01064 pyruv_kin pyruvate k 100.0 3E-118 7E-123 973.0 54.2 469 89-571 1-473 (473)
14 KOG2323 Pyruvate kinase [Carbo 100.0 6E-119 1E-123 959.5 45.5 488 65-574 5-501 (501)
15 PRK06739 pyruvate kinase; Vali 100.0 1E-104 2E-109 833.1 38.6 333 90-434 2-334 (352)
16 PF00224 PK: Pyruvate kinase, 100.0 7E-105 2E-109 840.0 31.0 341 88-435 1-345 (348)
17 PRK14725 pyruvate kinase; Prov 100.0 4.2E-92 9.2E-97 770.6 40.4 334 86-432 136-597 (608)
18 PRK08187 pyruvate kinase; Vali 100.0 1.3E-89 2.8E-94 746.1 40.4 333 86-431 130-479 (493)
19 PF02887 PK_C: Pyruvate kinase 100.0 1.3E-28 2.8E-33 221.8 14.5 115 456-573 1-117 (117)
20 TIGR03239 GarL 2-dehydro-3-deo 99.7 2.1E-16 4.5E-21 160.4 10.4 136 259-409 65-234 (249)
21 PRK10558 alpha-dehydro-beta-de 99.7 2.8E-16 6E-21 160.2 10.3 136 259-409 72-241 (256)
22 PRK10128 2-keto-3-deoxy-L-rham 99.6 6.7E-16 1.4E-20 158.1 9.8 136 260-409 72-241 (267)
23 COG3836 HpcH 2,4-dihydroxyhept 99.6 2.6E-15 5.6E-20 148.3 10.7 136 259-409 70-240 (255)
24 TIGR02311 HpaI 2,4-dihydroxyhe 99.6 1.3E-14 2.8E-19 147.4 10.1 136 260-409 66-235 (249)
25 PF03328 HpcH_HpaI: HpcH/HpaI 99.4 3.4E-13 7.4E-18 134.2 4.4 127 268-403 75-217 (221)
26 PRK06464 phosphoenolpyruvate s 99.2 3.6E-11 7.8E-16 139.8 13.1 148 263-430 618-789 (795)
27 TIGR01418 PEP_synth phosphoeno 99.2 5.5E-11 1.2E-15 138.3 13.3 138 261-408 609-769 (782)
28 TIGR01417 PTS_I_fam phosphoeno 99.1 2.3E-10 5.1E-15 128.6 9.6 130 265-405 370-525 (565)
29 PRK11177 phosphoenolpyruvate-p 99.0 9.5E-10 2.1E-14 123.8 8.8 130 265-405 371-526 (575)
30 TIGR01588 citE citrate lyase, 99.0 1E-09 2.3E-14 113.9 8.3 128 267-404 74-220 (288)
31 PF02896 PEP-utilizers_C: PEP- 98.1 1.6E-05 3.5E-10 82.9 9.8 135 261-406 119-279 (293)
32 COG2301 CitE Citrate lyase bet 97.9 2.4E-05 5.2E-10 81.0 7.7 132 266-404 68-212 (283)
33 cd00480 malate_synt Malate syn 97.7 0.00012 2.6E-09 81.8 8.4 126 280-405 186-345 (511)
34 PRK09255 malate synthase; Vali 97.6 0.00071 1.5E-08 75.7 12.7 122 276-405 204-366 (531)
35 cd00727 malate_synt_A Malate s 97.5 0.00028 6.1E-09 78.5 8.6 129 269-405 174-345 (511)
36 TIGR01344 malate_syn_A malate 97.2 0.00067 1.4E-08 75.5 7.2 128 271-405 177-346 (511)
37 PRK11061 fused phosphoenolpyru 97.1 0.0019 4.2E-08 75.6 10.2 125 270-405 541-692 (748)
38 PRK08649 inosine 5-monophospha 96.9 0.011 2.4E-07 63.9 12.8 122 267-405 143-285 (368)
39 COG1080 PtsA Phosphoenolpyruva 96.5 0.0052 1.1E-07 68.9 7.1 126 269-405 376-527 (574)
40 PLN02626 malate synthase 96.4 0.015 3.3E-07 65.1 10.2 124 280-405 213-372 (551)
41 TIGR01828 pyru_phos_dikin pyru 96.4 0.014 3E-07 69.4 9.9 137 259-406 668-851 (856)
42 TIGR01304 IMP_DH_rel_2 IMP deh 96.1 0.05 1.1E-06 58.8 11.8 119 268-405 145-284 (369)
43 cd00381 IMPDH IMPDH: The catal 96.0 0.11 2.3E-06 55.4 13.2 124 265-405 93-226 (325)
44 PF00478 IMPDH: IMP dehydrogen 95.8 0.16 3.4E-06 54.7 13.7 124 264-405 106-240 (352)
45 COG3605 PtsP Signal transducti 95.3 0.04 8.7E-07 61.9 7.2 133 279-428 559-717 (756)
46 TIGR02751 PEPCase_arch phospho 95.2 0.057 1.2E-06 60.3 8.2 92 278-369 122-247 (506)
47 PTZ00314 inosine-5'-monophosph 94.9 0.26 5.6E-06 55.5 12.4 123 265-405 240-373 (495)
48 PRK09279 pyruvate phosphate di 94.8 0.11 2.4E-06 61.9 9.3 137 258-405 673-856 (879)
49 PLN02274 inosine-5'-monophosph 94.3 0.63 1.4E-05 52.5 13.7 122 264-405 246-380 (505)
50 TIGR01302 IMP_dehydrog inosine 94.3 0.47 1E-05 52.7 12.5 127 263-405 221-356 (450)
51 TIGR01305 GMP_reduct_1 guanosi 94.2 0.58 1.3E-05 50.0 12.3 126 264-405 105-241 (343)
52 PRK13655 phosphoenolpyruvate c 93.6 0.31 6.8E-06 54.5 9.3 94 276-369 119-239 (494)
53 TIGR03151 enACPred_II putative 93.5 1.4 3.1E-05 46.5 13.7 114 267-405 76-190 (307)
54 PRK06843 inosine 5-monophospha 93.4 1.2 2.5E-05 49.0 13.1 125 264-405 151-285 (404)
55 cd00429 RPE Ribulose-5-phospha 93.1 1.7 3.8E-05 42.2 12.9 134 269-421 71-210 (211)
56 PRK07807 inosine 5-monophospha 93.0 1.3 2.8E-05 49.8 13.1 130 261-405 222-359 (479)
57 TIGR01306 GMP_reduct_2 guanosi 92.9 0.78 1.7E-05 48.9 10.7 127 262-405 90-227 (321)
58 PRK01130 N-acetylmannosamine-6 92.6 4.2 9.2E-05 40.4 15.0 119 267-406 77-203 (221)
59 PRK13125 trpA tryptophan synth 92.6 2 4.3E-05 43.7 12.8 116 269-405 92-214 (244)
60 PRK05096 guanosine 5'-monophos 92.4 2.3 5E-05 45.6 13.3 127 264-405 106-242 (346)
61 PRK05458 guanosine 5'-monophos 92.1 2.2 4.8E-05 45.6 12.8 127 264-406 95-231 (326)
62 cd04730 NPD_like 2-Nitropropan 92.1 3.5 7.6E-05 41.0 13.7 115 267-405 69-185 (236)
63 PRK07107 inosine 5-monophospha 91.6 1.4 3.1E-05 49.7 11.3 121 267-405 243-381 (502)
64 TIGR03128 RuMP_HxlA 3-hexulose 90.9 8.7 0.00019 37.5 14.9 136 270-424 68-205 (206)
65 cd04740 DHOD_1B_like Dihydroor 90.9 7.7 0.00017 40.3 15.3 125 269-409 106-264 (296)
66 cd04726 KGPDC_HPS 3-Keto-L-gul 90.9 8.7 0.00019 37.2 14.8 129 269-419 68-200 (202)
67 PRK08227 autoinducer 2 aldolas 90.4 4.4 9.5E-05 42.1 12.7 172 323-522 48-226 (264)
68 cd07944 DRE_TIM_HOA_like 4-hyd 89.9 12 0.00025 38.7 15.5 149 262-426 16-178 (266)
69 COG0574 PpsA Phosphoenolpyruva 89.8 1 2.2E-05 53.2 8.4 115 279-405 595-723 (740)
70 CHL00200 trpA tryptophan synth 89.7 4.9 0.00011 41.6 12.4 121 269-405 110-231 (263)
71 cd02940 DHPD_FMN Dihydropyrimi 89.4 5 0.00011 42.0 12.4 119 273-407 121-283 (299)
72 PRK00009 phosphoenolpyruvate c 89.3 1.6 3.4E-05 52.7 9.5 92 278-369 486-604 (911)
73 cd04722 TIM_phosphate_binding 89.2 5.6 0.00012 37.2 11.6 116 271-405 77-199 (200)
74 TIGR01163 rpe ribulose-phospha 89.1 8.5 0.00018 37.4 13.1 133 269-419 70-207 (210)
75 cd04729 NanE N-acetylmannosami 88.9 8.2 0.00018 38.3 13.0 118 267-405 81-206 (219)
76 PRK05581 ribulose-phosphate 3- 88.8 9.2 0.0002 37.6 13.3 139 268-424 74-217 (220)
77 cd00958 DhnA Class I fructose- 88.7 8.2 0.00018 38.6 13.0 69 271-343 149-221 (235)
78 PLN02591 tryptophan synthase 88.7 5.7 0.00012 40.9 11.9 119 269-405 97-218 (250)
79 cd00331 IGPS Indole-3-glycerol 88.5 14 0.0003 36.6 14.3 127 269-419 85-215 (217)
80 PRK13813 orotidine 5'-phosphat 88.3 2.1 4.6E-05 42.3 8.3 130 272-425 74-212 (215)
81 PRK15452 putative protease; Pr 88.2 6.8 0.00015 43.7 12.9 90 265-373 10-119 (443)
82 PRK13397 3-deoxy-7-phosphohept 88.0 13 0.00029 38.3 14.0 98 291-414 66-164 (250)
83 PRK04302 triosephosphate isome 87.8 21 0.00045 35.7 15.1 131 271-419 78-216 (223)
84 PTZ00170 D-ribulose-5-phosphat 87.6 8.5 0.00019 38.8 12.3 144 262-425 72-221 (228)
85 PRK05567 inosine 5'-monophosph 87.5 9.4 0.0002 42.9 13.7 125 266-405 228-360 (486)
86 cd02810 DHOD_DHPD_FMN Dihydroo 87.3 7.3 0.00016 40.2 12.0 123 269-405 115-272 (289)
87 cd03174 DRE_TIM_metallolyase D 87.0 27 0.00059 35.1 15.7 157 261-426 14-186 (265)
88 PRK02290 3-dehydroquinate synt 86.9 7 0.00015 42.0 11.6 212 265-506 13-264 (344)
89 cd04732 HisA HisA. Phosphorib 86.8 14 0.00031 36.7 13.3 130 266-415 83-229 (234)
90 TIGR01361 DAHP_synth_Bsub phos 86.7 12 0.00025 38.8 12.9 105 290-419 75-182 (260)
91 PRK09722 allulose-6-phosphate 86.6 14 0.00031 37.5 13.2 149 262-428 66-222 (229)
92 PTZ00398 phosphoenolpyruvate c 86.6 2.5 5.3E-05 51.4 8.9 138 280-417 547-709 (974)
93 TIGR01303 IMP_DH_rel_1 IMP deh 86.6 9.1 0.0002 43.0 12.9 129 261-406 220-358 (475)
94 PRK08318 dihydropyrimidine deh 86.5 8.7 0.00019 42.1 12.6 137 275-432 123-304 (420)
95 TIGR00262 trpA tryptophan synt 86.4 11 0.00024 38.8 12.6 119 269-405 106-227 (256)
96 PRK15447 putative protease; Pr 86.4 6.7 0.00015 41.3 11.2 118 265-409 14-142 (301)
97 PRK13398 3-deoxy-7-phosphohept 86.3 31 0.00067 35.9 15.8 106 290-420 77-185 (266)
98 PRK13307 bifunctional formalde 86.3 8.8 0.00019 42.1 12.2 132 271-425 243-378 (391)
99 TIGR00007 phosphoribosylformim 86.2 8 0.00017 38.5 11.2 121 266-406 82-219 (230)
100 cd00452 KDPG_aldolase KDPG and 86.1 12 0.00027 36.3 12.2 105 268-406 19-125 (190)
101 PRK07565 dihydroorotate dehydr 86.0 17 0.00036 38.7 14.1 144 269-433 118-291 (334)
102 cd00945 Aldolase_Class_I Class 85.9 14 0.00031 35.0 12.3 120 268-405 16-149 (201)
103 PRK08745 ribulose-phosphate 3- 85.9 20 0.00042 36.4 13.7 143 263-426 70-220 (223)
104 PRK02048 4-hydroxy-3-methylbut 85.8 9.7 0.00021 43.7 12.5 150 268-424 44-222 (611)
105 PRK07695 transcriptional regul 85.7 21 0.00046 34.9 13.7 131 271-425 66-197 (201)
106 TIGR02090 LEU1_arch isopropylm 85.5 16 0.00036 39.4 13.9 154 262-426 18-181 (363)
107 PRK08883 ribulose-phosphate 3- 85.4 18 0.00038 36.5 13.2 143 262-425 65-215 (220)
108 PF00290 Trp_syntA: Tryptophan 85.3 12 0.00026 38.7 12.1 119 270-405 107-226 (259)
109 PLN02334 ribulose-phosphate 3- 85.2 32 0.00069 34.5 15.0 138 270-427 80-224 (229)
110 PF01959 DHQS: 3-dehydroquinat 84.8 3.5 7.7E-05 44.3 8.2 211 266-506 13-274 (354)
111 PRK07028 bifunctional hexulose 83.9 27 0.00059 38.4 15.0 137 270-426 73-211 (430)
112 COG1751 Uncharacterized conser 83.8 2.7 5.8E-05 40.2 6.0 104 456-559 12-155 (186)
113 cd04726 KGPDC_HPS 3-Keto-L-gul 83.8 15 0.00032 35.6 11.5 115 265-405 12-133 (202)
114 cd07939 DRE_TIM_NifV Streptomy 83.5 38 0.00083 34.6 14.9 153 262-426 16-179 (259)
115 PRK00915 2-isopropylmalate syn 83.5 38 0.00082 38.5 16.1 155 262-427 22-190 (513)
116 PRK06852 aldolase; Validated 83.3 33 0.00071 36.5 14.5 109 382-498 112-234 (304)
117 PRK07259 dihydroorotate dehydr 83.2 28 0.00062 36.2 14.1 139 272-432 111-284 (301)
118 cd02803 OYE_like_FMN_family Ol 83.2 20 0.00044 37.6 13.1 129 261-405 129-311 (327)
119 PF04551 GcpE: GcpE protein; 83.1 6.8 0.00015 42.2 9.4 97 269-370 35-137 (359)
120 PRK00278 trpC indole-3-glycero 82.6 31 0.00067 35.5 13.9 131 269-421 124-256 (260)
121 PF03060 NMO: Nitronate monoox 82.6 16 0.00034 39.0 12.0 114 267-405 102-219 (330)
122 cd00958 DhnA Class I fructose- 82.3 46 0.00099 33.2 14.7 138 266-425 77-234 (235)
123 KOG2550 IMP dehydrogenase/GMP 82.3 6.4 0.00014 43.2 8.8 126 264-405 249-383 (503)
124 cd00945 Aldolase_Class_I Class 82.3 38 0.00083 32.0 13.6 108 384-504 64-182 (201)
125 COG0826 Collagenase and relate 82.1 22 0.00048 38.4 13.0 118 265-409 13-148 (347)
126 TIGR02320 PEP_mutase phosphoen 81.8 12 0.00026 39.3 10.6 113 269-404 96-239 (285)
127 PRK12595 bifunctional 3-deoxy- 81.4 9.2 0.0002 41.5 9.8 90 291-405 169-259 (360)
128 cd04727 pdxS PdxS is a subunit 81.1 58 0.0013 34.3 15.0 131 267-430 17-163 (283)
129 COG1465 Predicted alternative 81.0 18 0.00039 38.2 11.1 209 268-506 18-296 (376)
130 PRK13396 3-deoxy-7-phosphohept 80.7 49 0.0011 35.9 14.9 104 291-419 152-259 (352)
131 PF14010 PEPcase_2: Phosphoeno 80.5 1 2.2E-05 50.3 2.3 92 277-368 119-244 (491)
132 PF03102 NeuB: NeuB family; I 79.6 16 0.00035 37.5 10.4 99 290-415 55-154 (241)
133 PRK06015 keto-hydroxyglutarate 79.6 6.9 0.00015 39.0 7.6 45 352-410 85-129 (201)
134 PRK00043 thiE thiamine-phospha 79.5 35 0.00076 33.1 12.5 131 270-427 73-210 (212)
135 cd04742 NPD_FabD 2-Nitropropan 79.3 31 0.00066 38.3 13.1 125 267-404 84-247 (418)
136 PRK04180 pyridoxal biosynthesi 79.2 33 0.00072 36.2 12.6 116 283-431 56-173 (293)
137 PRK02083 imidazole glycerol ph 79.2 52 0.0011 33.4 14.0 131 266-418 84-240 (253)
138 cd07945 DRE_TIM_CMS Leptospira 79.1 27 0.00058 36.5 12.1 220 262-517 15-250 (280)
139 cd02811 IDI-2_FMN Isopentenyl- 78.7 49 0.0011 35.2 14.2 31 364-406 255-285 (326)
140 PF00682 HMGL-like: HMGL-like 78.7 69 0.0015 31.9 14.6 195 263-482 11-216 (237)
141 TIGR01163 rpe ribulose-phospha 78.4 67 0.0015 31.1 15.4 132 268-424 14-155 (210)
142 TIGR03128 RuMP_HxlA 3-hexulose 78.3 25 0.00055 34.2 11.1 117 263-405 9-133 (206)
143 PRK06552 keto-hydroxyglutarate 78.2 14 0.00029 37.2 9.2 101 286-404 20-135 (213)
144 PRK13210 putative L-xylulose 5 78.2 42 0.00092 34.0 13.2 133 268-408 19-183 (284)
145 PRK00286 xseA exodeoxyribonucl 78.0 41 0.00089 37.1 13.8 147 197-370 63-230 (438)
146 PRK11858 aksA trans-homoaconit 78.0 73 0.0016 34.6 15.5 155 262-427 22-186 (378)
147 PRK00694 4-hydroxy-3-methylbut 77.9 8.4 0.00018 44.0 8.3 150 268-429 48-228 (606)
148 cd00640 Trp-synth-beta_II Tryp 77.1 72 0.0016 31.9 14.3 119 354-502 63-188 (244)
149 cd04724 Tryptophan_synthase_al 76.9 64 0.0014 32.8 13.9 93 268-370 17-135 (242)
150 PRK05581 ribulose-phosphate 3- 76.6 62 0.0014 31.7 13.5 87 269-371 20-116 (220)
151 PF00478 IMPDH: IMP dehydrogen 76.6 5.3 0.00011 43.2 6.1 52 89-140 95-146 (352)
152 PRK08195 4-hyroxy-2-oxovalerat 76.5 72 0.0016 34.2 14.7 146 262-427 21-185 (337)
153 PRK09389 (R)-citramalate synth 76.3 60 0.0013 36.7 14.6 154 262-426 20-183 (488)
154 PLN02925 4-hydroxy-3-methylbut 76.2 30 0.00066 40.6 12.3 147 269-427 114-291 (733)
155 TIGR01037 pyrD_sub1_fam dihydr 75.6 72 0.0016 33.2 14.2 123 288-432 140-284 (300)
156 cd00405 PRAI Phosphoribosylant 75.3 26 0.00056 34.3 10.3 116 266-409 7-131 (203)
157 cd02809 alpha_hydroxyacid_oxid 75.2 35 0.00077 35.7 11.8 112 268-406 132-257 (299)
158 TIGR00612 ispG_gcpE 1-hydroxy- 74.9 22 0.00047 38.3 10.0 261 257-561 19-303 (346)
159 PRK13585 1-(5-phosphoribosyl)- 74.8 55 0.0012 32.7 12.7 128 266-414 86-231 (241)
160 cd07937 DRE_TIM_PC_TC_5S Pyruv 74.7 1E+02 0.0023 31.9 15.0 153 262-427 17-190 (275)
161 PLN03034 phosphoglycerate kina 74.5 14 0.0003 41.5 8.8 264 90-432 114-394 (481)
162 PRK13111 trpA tryptophan synth 74.5 30 0.00064 35.8 10.8 117 269-405 108-228 (258)
163 TIGR02660 nifV_homocitr homoci 74.2 45 0.00097 36.0 12.6 154 262-427 19-183 (365)
164 PLN02321 2-isopropylmalate syn 74.0 77 0.0017 37.1 15.0 158 263-427 105-281 (632)
165 PRK05286 dihydroorotate dehydr 73.8 19 0.0004 38.7 9.5 121 276-408 167-321 (344)
166 COG0434 SgcQ Predicted TIM-bar 73.6 35 0.00077 35.1 10.7 112 364-496 7-143 (263)
167 cd00381 IMPDH IMPDH: The catal 72.9 7 0.00015 41.6 6.0 50 91-140 83-132 (325)
168 TIGR00343 pyridoxal 5'-phospha 72.7 1.3E+02 0.0029 31.7 15.0 129 269-430 21-165 (287)
169 TIGR03586 PseI pseudaminic aci 72.6 73 0.0016 34.2 13.5 68 330-418 111-180 (327)
170 cd00408 DHDPS-like Dihydrodipi 71.9 29 0.00063 35.6 10.1 99 268-370 21-129 (281)
171 TIGR01949 AroFGH_arch predicte 71.9 60 0.0013 33.2 12.3 133 269-426 94-248 (258)
172 TIGR00736 nifR3_rel_arch TIM-b 71.5 71 0.0015 32.6 12.5 121 264-406 78-221 (231)
173 TIGR01182 eda Entner-Doudoroff 71.5 16 0.00035 36.5 7.7 101 272-406 27-129 (204)
174 PRK08227 autoinducer 2 aldolas 71.4 42 0.00092 34.9 11.1 143 269-427 98-248 (264)
175 TIGR02814 pfaD_fam PfaD family 71.2 74 0.0016 35.6 13.5 124 267-404 89-252 (444)
176 cd00377 ICL_PEPM Members of th 71.0 39 0.00084 34.5 10.6 113 269-405 88-226 (243)
177 cd00954 NAL N-Acetylneuraminic 70.9 28 0.00061 36.1 9.8 98 268-370 24-134 (288)
178 PRK05692 hydroxymethylglutaryl 70.8 71 0.0015 33.5 12.8 156 262-426 22-195 (287)
179 PRK05718 keto-hydroxyglutarate 70.7 9.9 0.00022 38.2 6.1 38 353-404 97-134 (212)
180 PRK13209 L-xylulose 5-phosphat 70.7 52 0.0011 33.5 11.6 37 268-304 24-70 (283)
181 cd04731 HisF The cyclase subun 70.5 1E+02 0.0023 30.9 13.6 131 267-417 82-235 (243)
182 COG1830 FbaB DhnA-type fructos 69.9 1.2E+02 0.0025 31.8 13.6 151 318-499 40-207 (265)
183 PF01791 DeoC: DeoC/LacD famil 69.8 52 0.0011 33.0 11.2 152 260-428 12-188 (236)
184 cd04739 DHOD_like Dihydroorota 69.7 1.4E+02 0.003 31.8 14.9 140 272-433 119-289 (325)
185 PLN02746 hydroxymethylglutaryl 69.3 32 0.00069 37.2 9.9 153 263-425 65-236 (347)
186 TIGR00973 leuA_bact 2-isopropy 68.8 98 0.0021 35.1 14.1 154 262-427 19-187 (494)
187 PRK03620 5-dehydro-4-deoxygluc 68.6 33 0.00072 36.0 9.8 98 268-370 31-138 (303)
188 PRK14057 epimerase; Provisiona 68.3 1.1E+02 0.0023 31.8 13.1 138 268-425 88-241 (254)
189 cd02922 FCB2_FMN Flavocytochro 68.2 87 0.0019 33.8 13.0 94 288-405 200-300 (344)
190 TIGR00674 dapA dihydrodipicoli 68.1 35 0.00077 35.3 9.8 98 268-370 22-130 (285)
191 TIGR00126 deoC deoxyribose-pho 68.1 30 0.00065 34.8 8.9 146 260-426 12-173 (211)
192 cd00564 TMP_TenI Thiamine mono 68.0 1.1E+02 0.0024 28.8 12.5 125 271-421 65-194 (196)
193 cd00959 DeoC 2-deoxyribose-5-p 67.9 1.1E+02 0.0024 30.1 12.9 103 364-484 50-155 (203)
194 cd07940 DRE_TIM_IPMS 2-isoprop 67.5 1.5E+02 0.0033 30.3 15.3 153 262-426 16-183 (268)
195 TIGR00735 hisF imidazoleglycer 67.4 1.5E+02 0.0032 30.2 14.1 128 266-416 84-240 (254)
196 cd07941 DRE_TIM_LeuA3 Desulfob 67.4 1.6E+02 0.0034 30.5 14.8 159 262-425 16-190 (273)
197 PRK07226 fructose-bisphosphate 67.2 57 0.0012 33.6 11.1 138 267-427 95-253 (267)
198 cd04737 LOX_like_FMN L-Lactate 67.2 61 0.0013 35.1 11.6 92 289-405 209-305 (351)
199 cd02932 OYE_YqiM_FMN Old yello 67.1 74 0.0016 33.8 12.2 126 262-405 143-320 (336)
200 COG3010 NanE Putative N-acetyl 67.1 50 0.0011 33.4 9.9 144 318-524 53-211 (229)
201 cd00429 RPE Ribulose-5-phospha 66.7 1.3E+02 0.0027 29.1 16.1 128 269-424 16-156 (211)
202 cd04733 OYE_like_2_FMN Old yel 66.1 1.3E+02 0.0028 32.0 13.9 132 262-405 138-322 (338)
203 PRK06512 thiamine-phosphate py 66.0 1.3E+02 0.0029 30.2 13.2 130 271-425 80-212 (221)
204 TIGR01302 IMP_dehydrog inosine 65.9 10 0.00023 42.1 5.7 48 92-139 214-261 (450)
205 cd00950 DHDPS Dihydrodipicolin 65.2 47 0.001 34.2 10.0 99 268-370 24-132 (284)
206 PRK08673 3-deoxy-7-phosphohept 65.0 1.7E+02 0.0037 31.6 14.3 106 290-420 143-251 (335)
207 PRK09250 fructose-bisphosphate 64.6 54 0.0012 35.5 10.4 135 319-475 89-234 (348)
208 TIGR03569 NeuB_NnaB N-acetylne 64.4 1.3E+02 0.0027 32.4 13.2 51 330-400 110-161 (329)
209 PRK08005 epimerase; Validated 64.4 1.3E+02 0.0027 30.3 12.5 137 262-421 65-207 (210)
210 PRK13802 bifunctional indole-3 64.3 3.1E+02 0.0066 32.7 21.7 67 266-340 168-244 (695)
211 PRK08091 ribulose-phosphate 3- 63.9 1.5E+02 0.0033 30.2 13.1 140 263-423 76-225 (228)
212 PF03328 HpcH_HpaI: HpcH/HpaI 63.6 51 0.0011 32.7 9.6 121 266-405 9-150 (221)
213 PRK15452 putative protease; Pr 63.5 21 0.00045 39.9 7.4 88 308-405 4-96 (443)
214 cd02801 DUS_like_FMN Dihydrour 63.5 1.5E+02 0.0032 29.2 12.9 118 270-405 72-213 (231)
215 cd04728 ThiG Thiazole synthase 63.5 1.5E+02 0.0032 30.7 12.9 82 330-427 145-226 (248)
216 cd07948 DRE_TIM_HCS Saccharomy 63.1 1.9E+02 0.0041 29.9 14.6 152 262-425 18-180 (262)
217 PRK05096 guanosine 5'-monophos 63.0 14 0.00031 39.7 5.8 49 92-140 98-148 (346)
218 TIGR00977 LeuA_rel 2-isopropyl 62.6 83 0.0018 36.0 12.1 161 262-428 19-196 (526)
219 cd04723 HisA_HisF Phosphoribos 62.5 1.1E+02 0.0023 30.9 11.8 130 266-417 88-230 (233)
220 TIGR03572 WbuZ glycosyl amidat 62.5 1.2E+02 0.0026 30.2 12.1 122 266-405 84-227 (232)
221 cd04738 DHOD_2_like Dihydrooro 62.5 68 0.0015 34.1 10.8 118 278-407 160-311 (327)
222 PRK00208 thiG thiazole synthas 62.3 1.6E+02 0.0035 30.5 12.9 68 344-427 159-226 (250)
223 TIGR00683 nanA N-acetylneurami 62.2 1.1E+02 0.0024 32.0 12.1 98 268-370 24-134 (290)
224 PRK07998 gatY putative fructos 62.2 89 0.0019 32.9 11.4 101 307-414 74-182 (283)
225 TIGR00237 xseA exodeoxyribonuc 61.8 69 0.0015 35.6 11.1 37 330-370 188-225 (432)
226 PRK07028 bifunctional hexulose 61.5 1.1E+02 0.0024 33.8 12.6 121 262-405 12-138 (430)
227 TIGR01949 AroFGH_arch predicte 61.5 18 0.0004 36.9 6.1 66 271-340 162-231 (258)
228 PF00899 ThiF: ThiF family; I 61.4 28 0.00061 31.6 6.8 69 291-371 56-124 (135)
229 TIGR03217 4OH_2_O_val_ald 4-hy 61.4 2.3E+02 0.0051 30.3 15.6 145 262-426 20-183 (333)
230 PF03437 BtpA: BtpA family; I 60.9 30 0.00065 35.8 7.5 84 263-354 155-250 (254)
231 COG0329 DapA Dihydrodipicolina 60.7 79 0.0017 33.3 10.8 99 268-370 28-136 (299)
232 TIGR00693 thiE thiamine-phosph 60.6 1.5E+02 0.0032 28.5 12.1 131 269-421 64-196 (196)
233 COG0826 Collagenase and relate 60.5 42 0.0009 36.3 8.8 80 320-405 16-99 (347)
234 PRK04147 N-acetylneuraminate l 60.1 1E+02 0.0023 32.0 11.6 98 268-370 27-136 (293)
235 cd07938 DRE_TIM_HMGL 3-hydroxy 59.9 1.7E+02 0.0038 30.3 13.1 158 262-425 16-188 (274)
236 PRK07695 transcriptional regul 59.7 27 0.00058 34.2 6.7 70 266-340 103-181 (201)
237 PRK00230 orotidine 5'-phosphat 59.5 2E+02 0.0043 29.0 13.3 140 268-425 70-227 (230)
238 PLN02826 dihydroorotate dehydr 59.4 1.8E+02 0.0039 32.2 13.6 87 307-405 262-370 (409)
239 PLN02495 oxidoreductase, actin 59.3 1.1E+02 0.0024 33.6 11.8 51 348-408 165-217 (385)
240 PTZ00314 inosine-5'-monophosph 59.2 13 0.00028 42.1 4.9 45 95-139 234-278 (495)
241 TIGR01305 GMP_reduct_1 guanosi 59.2 19 0.00042 38.7 5.9 48 92-139 97-146 (343)
242 COG0119 LeuA Isopropylmalate/h 58.9 1.3E+02 0.0029 33.2 12.5 158 262-428 20-188 (409)
243 PRK03170 dihydrodipicolinate s 58.7 64 0.0014 33.4 9.7 98 268-370 25-133 (292)
244 PLN02417 dihydrodipicolinate s 58.6 63 0.0014 33.5 9.6 96 268-370 25-131 (280)
245 PRK15447 putative protease; Pr 58.4 52 0.0011 34.7 9.0 67 330-405 29-95 (301)
246 COG0036 Rpe Pentose-5-phosphat 58.4 1.2E+02 0.0026 30.8 11.1 64 268-335 74-137 (220)
247 cd04735 OYE_like_4_FMN Old yel 58.1 1E+02 0.0022 33.1 11.4 132 261-405 132-313 (353)
248 PRK09856 fructoselysine 3-epim 57.9 1.1E+02 0.0023 31.0 11.0 120 268-395 16-171 (275)
249 PRK00278 trpC indole-3-glycero 57.7 2E+02 0.0044 29.6 13.0 113 266-407 70-189 (260)
250 cd02808 GltS_FMN Glutamate syn 57.6 17 0.00038 39.7 5.4 93 267-372 226-341 (392)
251 cd00959 DeoC 2-deoxyribose-5-p 57.5 46 0.00099 32.8 7.9 144 261-426 12-172 (203)
252 cd01561 CBS_like CBS_like: Thi 57.4 1.6E+02 0.0034 30.5 12.3 124 355-504 67-197 (291)
253 PF00834 Ribul_P_3_epim: Ribul 57.4 43 0.00093 33.3 7.7 118 268-405 70-194 (201)
254 KOG3974 Predicted sugar kinase 57.0 67 0.0015 33.6 9.0 112 273-396 52-176 (306)
255 cd00951 KDGDH 5-dehydro-4-deox 56.9 1.5E+02 0.0032 30.9 12.1 98 268-370 24-131 (289)
256 PF01136 Peptidase_U32: Peptid 56.8 19 0.00042 35.8 5.3 40 103-142 158-197 (233)
257 PF01729 QRPTase_C: Quinolinat 56.8 19 0.00041 34.9 5.0 64 267-336 89-155 (169)
258 TIGR01037 pyrD_sub1_fam dihydr 56.7 2.5E+02 0.0054 29.2 15.9 128 264-406 21-190 (300)
259 PRK08385 nicotinate-nucleotide 56.7 24 0.00053 36.9 6.1 67 266-337 190-260 (278)
260 PRK06843 inosine 5-monophospha 56.7 16 0.00035 40.2 5.0 49 91-139 142-190 (404)
261 PRK07428 nicotinate-nucleotide 56.6 47 0.001 35.0 8.2 67 265-337 203-272 (288)
262 TIGR02708 L_lactate_ox L-lacta 56.4 58 0.0012 35.6 9.1 96 289-407 216-314 (367)
263 PRK14045 1-aminocyclopropane-1 56.1 2.2E+02 0.0047 30.2 13.4 47 458-504 166-221 (329)
264 PRK05458 guanosine 5'-monophos 56.1 19 0.00042 38.5 5.3 44 96-139 91-136 (326)
265 TIGR00737 nifR3_yhdG putative 56.0 1.6E+02 0.0034 31.1 12.2 117 272-405 82-222 (319)
266 PF07521 RMMBL: RNA-metabolisi 55.8 8.4 0.00018 28.7 1.8 25 114-138 6-31 (43)
267 TIGR01306 GMP_reduct_2 guanosi 55.5 23 0.0005 37.9 5.8 48 92-139 84-133 (321)
268 TIGR02356 adenyl_thiF thiazole 55.0 54 0.0012 32.3 8.0 67 292-370 76-142 (202)
269 PRK10411 DNA-binding transcrip 54.9 22 0.00049 36.1 5.4 63 456-522 80-142 (240)
270 cd01485 E1-1_like Ubiquitin ac 54.9 54 0.0012 32.2 8.0 67 293-370 77-144 (198)
271 PRK00366 ispG 4-hydroxy-3-meth 54.9 1E+02 0.0022 33.5 10.4 216 269-524 46-274 (360)
272 TIGR01047 nspC carboxynorsperm 54.7 40 0.00086 36.6 7.6 54 70-132 52-105 (380)
273 COG0159 TrpA Tryptophan syntha 54.6 1.3E+02 0.0028 31.5 10.8 116 270-405 114-233 (265)
274 PRK00507 deoxyribose-phosphate 54.2 1.4E+02 0.0031 30.1 11.0 150 260-425 16-176 (221)
275 TIGR00736 nifR3_rel_arch TIM-b 54.2 37 0.00081 34.6 6.8 71 269-344 152-228 (231)
276 PRK00748 1-(5-phosphoribosyl)- 54.0 2E+02 0.0043 28.4 12.0 120 266-406 84-221 (233)
277 cd04724 Tryptophan_synthase_al 53.9 1.8E+02 0.004 29.4 11.9 118 269-405 95-215 (242)
278 cd04741 DHOD_1A_like Dihydroor 53.8 2.8E+02 0.0061 29.0 14.1 116 278-407 119-274 (294)
279 TIGR00739 yajC preprotein tran 53.5 29 0.00063 29.8 5.0 42 198-240 32-73 (84)
280 TIGR01138 cysM cysteine syntha 53.2 2.2E+02 0.0049 29.5 12.7 122 355-504 73-200 (290)
281 PF00701 DHDPS: Dihydrodipicol 53.0 1.7E+02 0.0037 30.1 11.8 98 268-370 25-133 (289)
282 PRK09140 2-dehydro-3-deoxy-6-p 52.9 1.7E+02 0.0038 29.1 11.2 104 269-404 26-130 (206)
283 PLN02274 inosine-5'-monophosph 52.3 25 0.00054 39.9 5.7 49 91-139 237-285 (505)
284 TIGR02355 moeB molybdopterin s 52.0 64 0.0014 32.8 8.2 68 292-371 79-146 (240)
285 cd02808 GltS_FMN Glutamate syn 51.9 1.5E+02 0.0033 32.4 11.6 117 275-405 180-314 (392)
286 cd04737 LOX_like_FMN L-Lactate 51.8 38 0.00082 36.7 6.7 69 267-340 231-309 (351)
287 PRK14041 oxaloacetate decarbox 51.8 3.7E+02 0.0079 30.4 14.7 148 262-425 21-192 (467)
288 PRK12344 putative alpha-isopro 51.5 3.6E+02 0.0078 30.8 14.8 162 262-428 23-200 (524)
289 cd02933 OYE_like_FMN Old yello 51.4 1.4E+02 0.0031 32.0 11.0 124 262-405 141-314 (338)
290 cd01492 Aos1_SUMO Ubiquitin ac 51.2 79 0.0017 31.1 8.5 65 293-370 77-141 (197)
291 KOG3111 D-ribulose-5-phosphate 51.1 2.7E+02 0.006 28.0 12.4 140 268-428 77-220 (224)
292 COG1646 Predicted phosphate-bi 51.0 47 0.001 34.0 6.8 173 308-512 16-211 (240)
293 PF00311 PEPcase: Phosphoenolp 50.5 25 0.00054 42.1 5.6 90 280-369 365-481 (794)
294 PTZ00005 phosphoglycerate kina 50.4 71 0.0015 35.5 8.6 215 90-370 38-283 (417)
295 cd05017 SIS_PGI_PMI_1 The memb 50.3 48 0.001 29.5 6.3 52 471-524 43-99 (119)
296 PRK05848 nicotinate-nucleotide 50.2 68 0.0015 33.5 8.1 65 267-337 191-258 (273)
297 PF01081 Aldolase: KDPG and KH 50.0 36 0.00078 33.9 5.8 106 273-411 28-134 (196)
298 cd01562 Thr-dehyd Threonine de 49.9 1.8E+02 0.0039 30.0 11.3 119 354-503 78-201 (304)
299 PLN02535 glycolate oxidase 49.4 32 0.00069 37.5 5.7 66 267-340 233-311 (364)
300 cd01568 QPRTase_NadC Quinolina 49.0 52 0.0011 34.1 7.1 67 263-336 186-255 (269)
301 cd02940 DHPD_FMN Dihydropyrimi 48.9 1.8E+02 0.0038 30.5 11.1 48 349-406 152-201 (299)
302 cd04734 OYE_like_3_FMN Old yel 48.8 3.4E+02 0.0073 29.1 13.4 132 262-405 130-315 (343)
303 PRK09427 bifunctional indole-3 48.6 32 0.00069 38.6 5.7 69 266-341 167-243 (454)
304 TIGR02317 prpB methylisocitrat 48.6 2E+02 0.0043 30.3 11.3 115 270-405 93-229 (285)
305 cd00953 KDG_aldolase KDG (2-ke 48.4 1.5E+02 0.0031 30.8 10.3 94 269-370 24-127 (279)
306 PRK07334 threonine dehydratase 48.1 1.9E+02 0.0041 31.6 11.6 119 355-504 85-208 (403)
307 PRK10886 DnaA initiator-associ 47.9 2.9E+02 0.0063 27.3 12.9 97 457-559 25-148 (196)
308 PRK07114 keto-hydroxyglutarate 47.7 1.4E+02 0.0031 30.2 9.8 46 352-411 100-145 (222)
309 PRK04180 pyridoxal biosynthesi 47.6 1.9E+02 0.0041 30.7 10.8 136 268-425 86-254 (293)
310 PF01180 DHO_dh: Dihydroorotat 47.6 96 0.0021 32.2 8.9 126 266-405 112-273 (295)
311 PRK08255 salicylyl-CoA 5-hydro 47.6 1.9E+02 0.0041 34.5 12.3 132 262-405 540-717 (765)
312 PF00582 Usp: Universal stress 47.5 45 0.00097 28.6 5.5 43 457-500 88-139 (140)
313 TIGR03249 KdgD 5-dehydro-4-deo 47.5 1.4E+02 0.003 31.2 10.1 98 268-370 29-136 (296)
314 TIGR01588 citE citrate lyase, 47.4 3.5E+02 0.0077 28.2 14.2 74 263-336 9-92 (288)
315 TIGR00343 pyridoxal 5'-phospha 47.2 3.7E+02 0.0081 28.4 14.0 36 390-425 213-248 (287)
316 cd01573 modD_like ModD; Quinol 47.0 75 0.0016 33.1 7.9 67 264-336 189-258 (272)
317 cd00950 DHDPS Dihydrodipicolin 46.9 1.6E+02 0.0034 30.3 10.3 95 323-429 27-126 (284)
318 COG0061 nadF NAD kinase [Coenz 46.7 19 0.00042 37.5 3.5 37 468-504 162-202 (281)
319 TIGR00674 dapA dihydrodipicoli 46.7 1.2E+02 0.0027 31.3 9.5 95 323-429 25-124 (285)
320 PRK04452 acetyl-CoA decarbonyl 46.7 2.9E+02 0.0063 29.6 12.3 149 265-426 136-310 (319)
321 TIGR03217 4OH_2_O_val_ald 4-hy 46.6 63 0.0014 34.6 7.4 55 72-127 58-112 (333)
322 KOG2550 IMP dehydrogenase/GMP 46.6 34 0.00073 37.8 5.3 46 95-140 244-289 (503)
323 cd02809 alpha_hydroxyacid_oxid 46.6 48 0.001 34.7 6.4 62 268-337 183-257 (299)
324 PRK08417 dihydroorotase; Provi 46.5 4.1E+02 0.0089 28.7 15.3 129 259-396 40-189 (386)
325 PRK04885 ppnK inorganic polyph 46.5 19 0.00041 37.4 3.4 54 469-524 145-203 (265)
326 cd01487 E1_ThiF_like E1_ThiF_l 46.4 84 0.0018 30.2 7.7 67 293-371 54-121 (174)
327 PF05690 ThiG: Thiazole biosyn 46.4 92 0.002 32.1 8.0 82 330-427 145-226 (247)
328 PRK10737 FKBP-type peptidyl-pr 46.2 45 0.00097 33.2 5.8 59 172-230 52-118 (196)
329 TIGR01093 aroD 3-dehydroquinat 46.2 48 0.001 33.3 6.1 60 89-148 117-182 (228)
330 cd02930 DCR_FMN 2,4-dienoyl-Co 46.1 2.5E+02 0.0055 30.0 12.0 132 262-405 126-306 (353)
331 cd00408 DHDPS-like Dihydrodipi 46.1 3.4E+02 0.0073 27.7 12.6 93 324-428 25-122 (281)
332 PRK12483 threonine dehydratase 46.0 2.2E+02 0.0048 32.6 12.0 120 354-504 98-223 (521)
333 TIGR02319 CPEP_Pphonmut carbox 45.7 1.9E+02 0.0041 30.6 10.7 115 270-405 97-233 (294)
334 PF00455 DeoRC: DeoR C termina 45.6 23 0.0005 33.7 3.6 63 456-522 6-69 (161)
335 PRK09532 DNA polymerase III su 45.6 2.4E+02 0.0051 34.5 12.7 126 269-399 23-228 (874)
336 PRK06381 threonine synthase; V 45.5 3.5E+02 0.0075 28.3 12.8 121 355-504 77-209 (319)
337 COG2352 Ppc Phosphoenolpyruvat 45.5 53 0.0011 39.3 7.0 87 282-368 489-600 (910)
338 PRK07315 fructose-bisphosphate 45.5 3.3E+02 0.0071 28.7 12.4 150 259-415 19-183 (293)
339 PRK14024 phosphoribosyl isomer 45.4 3.4E+02 0.0073 27.4 14.0 135 266-418 85-235 (241)
340 cd02810 DHOD_DHPD_FMN Dihydroo 45.4 2.8E+02 0.006 28.5 11.9 52 349-408 146-199 (289)
341 PRK08195 4-hyroxy-2-oxovalerat 45.4 67 0.0014 34.5 7.4 68 71-138 58-125 (337)
342 TIGR01108 oadA oxaloacetate de 45.3 99 0.0021 35.8 9.2 148 262-425 17-188 (582)
343 cd00757 ThiF_MoeB_HesA_family 45.3 96 0.0021 31.0 8.2 67 292-370 76-142 (228)
344 cd03332 LMO_FMN L-Lactate 2-mo 45.2 1.2E+02 0.0026 33.3 9.4 93 289-405 241-337 (383)
345 PRK06815 hypothetical protein; 45.1 2E+02 0.0043 30.3 10.9 119 355-504 82-205 (317)
346 PRK05742 nicotinate-nucleotide 45.1 86 0.0019 32.8 8.0 65 264-337 195-262 (277)
347 TIGR01859 fruc_bis_ald_ fructo 44.8 3.9E+02 0.0085 28.0 13.3 159 259-425 17-196 (282)
348 KOG2178 Predicted sugar kinase 44.5 21 0.00046 39.1 3.4 81 469-556 283-375 (409)
349 PRK11840 bifunctional sulfur c 44.5 4.2E+02 0.0091 28.6 13.0 98 311-426 202-299 (326)
350 TIGR00742 yjbN tRNA dihydrouri 44.4 51 0.0011 35.1 6.3 67 268-341 144-228 (318)
351 TIGR00259 thylakoid_BtpA membr 44.3 1.2E+02 0.0026 31.6 8.7 72 263-338 154-229 (257)
352 COG0821 gcpE 1-hydroxy-2-methy 44.0 1.9E+02 0.0041 31.4 10.2 151 257-425 21-190 (361)
353 TIGR01858 tag_bisphos_ald clas 44.0 2.9E+02 0.0062 29.1 11.6 154 268-428 5-199 (282)
354 cd00755 YgdL_like Family of ac 44.0 52 0.0011 33.4 6.0 86 292-393 66-152 (231)
355 PLN02495 oxidoreductase, actin 44.0 4.8E+02 0.01 28.7 16.1 148 264-433 125-322 (385)
356 cd01572 QPRTase Quinolinate ph 43.9 65 0.0014 33.5 6.8 66 263-337 187-255 (268)
357 PRK09140 2-dehydro-3-deoxy-6-p 43.8 3.4E+02 0.0074 27.0 12.6 104 267-407 72-181 (206)
358 PRK15005 universal stress prot 43.8 47 0.001 29.8 5.2 40 460-500 96-143 (144)
359 PRK10681 DNA-binding transcrip 43.8 38 0.00083 34.6 5.1 101 456-563 79-183 (252)
360 COG0800 Eda 2-keto-3-deoxy-6-p 43.5 1.2E+02 0.0025 30.8 8.2 104 282-404 16-132 (211)
361 cd05565 PTS_IIB_lactose PTS_II 43.4 1.2E+02 0.0025 26.9 7.4 69 287-371 11-79 (99)
362 TIGR02708 L_lactate_ox L-lacta 43.4 73 0.0016 34.8 7.3 69 267-340 238-316 (367)
363 TIGR01768 GGGP-family geranylg 43.4 58 0.0013 33.1 6.2 174 318-522 15-208 (223)
364 PRK05690 molybdopterin biosynt 43.2 94 0.002 31.7 7.8 67 292-370 87-153 (245)
365 PRK08072 nicotinate-nucleotide 43.2 69 0.0015 33.6 6.9 67 262-337 192-261 (277)
366 KOG2335 tRNA-dihydrouridine sy 43.1 59 0.0013 35.3 6.4 92 267-364 157-267 (358)
367 PRK09250 fructose-bisphosphate 43.0 2.9E+02 0.0063 30.1 11.6 95 265-369 90-197 (348)
368 PRK12331 oxaloacetate decarbox 42.6 2.7E+02 0.0059 31.2 11.8 151 262-426 22-194 (448)
369 PRK08644 thiamine biosynthesis 42.5 1.1E+02 0.0023 30.6 7.9 67 293-371 83-150 (212)
370 TIGR01136 cysKM cysteine synth 42.4 3.6E+02 0.0079 27.9 12.2 122 355-504 72-200 (299)
371 PLN02565 cysteine synthase 42.1 3.5E+02 0.0075 28.7 12.2 122 356-504 82-209 (322)
372 TIGR00695 uxuA mannonate dehyd 42.0 61 0.0013 35.7 6.5 86 266-371 11-103 (394)
373 PRK07896 nicotinate-nucleotide 41.9 1.1E+02 0.0023 32.4 8.1 65 267-337 208-275 (289)
374 cd00954 NAL N-Acetylneuraminic 41.7 3.9E+02 0.0084 27.7 12.3 94 323-428 27-126 (288)
375 TIGR00853 pts-lac PTS system, 41.6 1E+02 0.0023 26.8 6.8 62 292-369 19-80 (95)
376 PRK02615 thiamine-phosphate py 41.6 2.8E+02 0.006 30.1 11.4 129 271-425 210-342 (347)
377 cd00452 KDPG_aldolase KDPG and 41.6 2.7E+02 0.0059 26.9 10.5 105 267-408 65-174 (190)
378 cd02929 TMADH_HD_FMN Trimethyl 41.5 3.2E+02 0.007 29.6 12.0 133 261-405 138-319 (370)
379 KOG4175 Tryptophan synthase al 41.4 1.6E+02 0.0035 29.8 8.6 129 260-405 105-235 (268)
380 PRK09224 threonine dehydratase 41.4 3.7E+02 0.0079 30.5 12.9 120 354-504 81-206 (504)
381 PRK10425 DNase TatD; Provision 41.4 3.6E+02 0.0078 27.7 11.8 107 259-370 9-127 (258)
382 cd02922 FCB2_FMN Flavocytochro 41.4 67 0.0014 34.7 6.7 69 267-340 223-304 (344)
383 PF13714 PEP_mutase: Phosphoen 41.4 2E+02 0.0044 29.3 9.9 109 271-404 91-218 (238)
384 PLN02970 serine racemase 41.3 3.3E+02 0.0071 28.9 11.9 119 355-504 89-212 (328)
385 PRK10717 cysteine synthase A; 41.2 3E+02 0.0064 29.1 11.5 130 355-504 78-213 (330)
386 PLN02741 riboflavin synthase 41.0 59 0.0013 32.3 5.7 57 191-249 23-86 (194)
387 cd00331 IGPS Indole-3-glycerol 40.9 3.6E+02 0.0078 26.4 14.0 113 264-408 29-151 (217)
388 COG3010 NanE Putative N-acetyl 40.9 75 0.0016 32.2 6.3 164 102-298 30-200 (229)
389 PRK01130 N-acetylmannosamine-6 40.9 88 0.0019 30.9 7.1 66 267-338 128-204 (221)
390 cd00947 TBP_aldolase_IIB Tagat 40.8 4.3E+02 0.0092 27.8 12.3 116 307-426 69-193 (276)
391 TIGR03844 cysteate_syn cysteat 40.7 2.1E+02 0.0046 31.4 10.5 87 454-543 99-189 (398)
392 PRK11320 prpB 2-methylisocitra 40.3 3.1E+02 0.0067 29.0 11.3 98 287-405 130-234 (292)
393 PRK10415 tRNA-dihydrouridine s 40.2 3.9E+02 0.0085 28.3 12.2 130 272-413 27-177 (321)
394 COG0279 GmhA Phosphoheptose is 40.2 2.6E+02 0.0056 27.5 9.6 96 456-558 24-147 (176)
395 PRK00311 panB 3-methyl-2-oxobu 40.2 4.5E+02 0.0098 27.4 13.0 129 262-405 19-181 (264)
396 PF01487 DHquinase_I: Type I 3 40.1 57 0.0012 32.4 5.6 62 88-149 111-178 (224)
397 COG0646 MetH Methionine syntha 40.0 1.5E+02 0.0032 31.7 8.6 63 89-152 113-193 (311)
398 PRK00561 ppnK inorganic polyph 39.7 30 0.00064 35.9 3.5 36 469-504 134-173 (259)
399 COG0710 AroD 3-dehydroquinate 39.3 99 0.0021 31.6 7.1 80 69-149 95-180 (231)
400 PRK08638 threonine dehydratase 39.3 3.6E+02 0.0078 28.8 11.8 120 354-504 88-212 (333)
401 PRK14077 pnk inorganic polypho 39.3 29 0.00062 36.5 3.4 35 469-503 174-212 (287)
402 cd02911 arch_FMN Archeal FMN-b 39.2 2.1E+02 0.0045 29.0 9.5 97 287-407 122-222 (233)
403 PLN02979 glycolate oxidase 39.2 1.9E+02 0.0042 31.6 9.7 30 364-405 278-307 (366)
404 PLN03013 cysteine synthase 39.0 3.4E+02 0.0074 30.3 11.8 123 356-505 190-318 (429)
405 PRK03501 ppnK inorganic polyph 38.9 31 0.00067 35.8 3.6 36 469-504 146-185 (264)
406 PRK04169 geranylgeranylglycery 38.9 90 0.002 31.9 6.8 57 323-404 25-82 (232)
407 cd06557 KPHMT-like Ketopantoat 38.8 4.6E+02 0.01 27.1 12.7 128 263-404 17-177 (254)
408 cd04727 pdxS PdxS is a subunit 38.8 3E+02 0.0064 29.1 10.6 138 268-426 77-246 (283)
409 PRK15116 sulfur acceptor prote 38.7 66 0.0014 33.5 5.9 87 292-394 85-172 (268)
410 PRK01911 ppnK inorganic polyph 38.6 27 0.00059 36.8 3.1 35 469-503 173-211 (292)
411 TIGR01139 cysK cysteine syntha 38.6 3.5E+02 0.0077 28.0 11.5 123 355-504 71-200 (298)
412 PRK06801 hypothetical protein; 38.5 4.7E+02 0.01 27.6 12.2 105 307-415 74-186 (286)
413 PRK06806 fructose-bisphosphate 38.5 84 0.0018 32.9 6.7 55 92-147 76-130 (281)
414 cd00952 CHBPH_aldolase Trans-o 38.4 4.4E+02 0.0095 27.8 12.2 98 268-370 32-141 (309)
415 COG0167 PyrD Dihydroorotate de 38.3 3.4E+02 0.0074 29.0 11.2 95 278-411 96-199 (310)
416 TIGR01137 cysta_beta cystathio 38.3 4.1E+02 0.0088 29.2 12.4 126 355-504 76-207 (454)
417 COG0069 GltB Glutamate synthas 38.3 86 0.0019 35.5 7.0 116 276-404 270-402 (485)
418 TIGR01127 ilvA_1Cterm threonin 38.2 2.8E+02 0.0061 29.8 11.0 121 354-505 61-186 (380)
419 PF00701 DHDPS: Dihydrodipicol 38.1 2.9E+02 0.0063 28.5 10.7 96 322-429 27-127 (289)
420 PRK08649 inosine 5-monophospha 38.0 2.4E+02 0.0052 30.8 10.3 100 290-407 117-217 (368)
421 cd02911 arch_FMN Archeal FMN-b 38.0 65 0.0014 32.7 5.7 63 268-338 155-222 (233)
422 TIGR03528 2_3_DAP_am_ly diamin 37.8 3.4E+02 0.0074 29.8 11.6 125 355-503 127-263 (396)
423 cd02812 PcrB_like PcrB_like pr 37.8 51 0.0011 33.4 4.8 61 321-405 15-77 (219)
424 PF01645 Glu_synthase: Conserv 37.6 71 0.0015 34.9 6.2 120 273-405 167-303 (368)
425 cd04736 MDH_FMN Mandelate dehy 37.6 1.9E+02 0.0041 31.5 9.4 93 289-405 224-318 (361)
426 PTZ00344 pyridoxal kinase; Pro 37.4 1.6E+02 0.0035 30.6 8.7 112 259-371 53-182 (296)
427 TIGR00735 hisF imidazoleglycer 37.4 1.2E+02 0.0027 30.8 7.6 87 268-367 158-253 (254)
428 PRK06381 threonine synthase; V 37.3 1.4E+02 0.003 31.3 8.3 87 453-542 44-134 (319)
429 PRK12737 gatY tagatose-bisphos 37.2 4.8E+02 0.01 27.5 12.0 154 268-428 7-201 (284)
430 cd07943 DRE_TIM_HOA 4-hydroxy- 37.1 4.7E+02 0.01 26.7 15.5 146 263-425 19-180 (263)
431 PRK03372 ppnK inorganic polyph 37.1 34 0.00074 36.3 3.6 36 469-504 182-221 (306)
432 PRK03708 ppnK inorganic polyph 37.0 34 0.00073 35.7 3.5 36 469-504 162-201 (277)
433 PRK12857 fructose-1,6-bisphosp 37.0 4.5E+02 0.0098 27.7 11.8 154 268-428 7-201 (284)
434 PLN03228 methylthioalkylmalate 36.8 6.9E+02 0.015 28.5 14.1 158 262-426 102-279 (503)
435 PRK09195 gatY tagatose-bisphos 36.8 4.9E+02 0.011 27.4 12.0 154 268-428 7-201 (284)
436 cd08567 GDPD_SpGDE_like Glycer 36.7 2.1E+02 0.0045 28.8 9.1 42 350-404 217-258 (263)
437 PRK09802 DNA-binding transcrip 36.7 60 0.0013 33.6 5.2 63 456-522 93-156 (269)
438 TIGR02321 Pphn_pyruv_hyd phosp 36.6 2.5E+02 0.0053 29.7 9.8 44 293-336 135-186 (290)
439 cd04740 DHOD_1B_like Dihydroor 36.6 5E+02 0.011 26.8 15.1 87 307-408 89-189 (296)
440 PRK12677 xylose isomerase; Pro 36.3 5.4E+02 0.012 28.2 12.8 146 269-420 35-231 (384)
441 PRK13509 transcriptional repre 36.3 87 0.0019 32.0 6.3 63 456-522 80-142 (251)
442 TIGR01303 IMP_DH_rel_1 IMP deh 36.3 53 0.0012 37.0 5.1 49 91-139 214-262 (475)
443 PRK07709 fructose-bisphosphate 36.2 2.6E+02 0.0057 29.4 9.9 127 293-428 64-202 (285)
444 cd00952 CHBPH_aldolase Trans-o 36.2 2.5E+02 0.0055 29.5 10.0 93 324-428 36-133 (309)
445 PRK06543 nicotinate-nucleotide 36.1 62 0.0013 34.1 5.2 63 266-337 201-266 (281)
446 PRK02412 aroD 3-dehydroquinate 36.0 4.9E+02 0.011 26.6 12.1 138 268-424 98-248 (253)
447 PF04009 DUF356: Protein of un 36.0 38 0.00083 30.5 3.1 67 454-520 37-106 (107)
448 PRK08185 hypothetical protein; 36.0 2.2E+02 0.0048 30.0 9.3 115 293-414 57-178 (283)
449 COG4043 Preprotein translocase 35.9 48 0.001 29.7 3.7 29 195-224 26-54 (111)
450 cd04729 NanE N-acetylmannosami 35.8 1.2E+02 0.0026 30.0 7.1 66 267-338 132-208 (219)
451 PRK02649 ppnK inorganic polyph 35.8 36 0.00078 36.1 3.5 35 469-503 178-216 (305)
452 PRK01185 ppnK inorganic polyph 35.8 31 0.00068 35.9 3.0 36 469-504 155-194 (271)
453 PRK02645 ppnK inorganic polyph 35.5 34 0.00073 36.2 3.3 37 469-505 176-216 (305)
454 PF00677 Lum_binding: Lumazine 35.5 1.4E+02 0.0029 25.5 6.4 42 191-234 20-62 (85)
455 cd04501 SGNH_hydrolase_like_4 35.5 73 0.0016 29.9 5.3 42 330-371 60-103 (183)
456 TIGR00187 ribE riboflavin synt 35.4 70 0.0015 31.9 5.3 57 191-249 22-86 (200)
457 TIGR02313 HpaI-NOT-DapA 2,4-di 35.0 5.4E+02 0.012 26.8 12.2 98 268-370 24-133 (294)
458 PRK01231 ppnK inorganic polyph 34.9 33 0.00072 36.1 3.1 37 469-505 172-212 (295)
459 PRK04761 ppnK inorganic polyph 34.9 41 0.00089 34.6 3.7 38 468-505 130-171 (246)
460 cd02931 ER_like_FMN Enoate red 34.7 6.3E+02 0.014 27.5 13.9 133 261-405 138-335 (382)
461 COG0157 NadC Nicotinate-nucleo 34.5 1.3E+02 0.0028 31.7 7.2 64 266-336 196-262 (280)
462 PRK06096 molybdenum transport 34.4 79 0.0017 33.3 5.7 64 267-336 198-264 (284)
463 TIGR01740 pyrF orotidine 5'-ph 34.3 4.7E+02 0.01 25.8 11.4 49 271-320 69-117 (213)
464 COG1105 FruK Fructose-1-phosph 34.2 2.2E+02 0.0048 30.5 9.0 60 329-393 129-194 (310)
465 PRK05567 inosine 5'-monophosph 34.2 88 0.0019 35.2 6.5 50 90-139 216-265 (486)
466 PRK06260 threonine synthase; V 34.1 2.5E+02 0.0055 30.6 9.9 84 454-540 97-185 (397)
467 PRK11761 cysM cysteine synthas 34.1 4.8E+02 0.01 27.2 11.6 122 355-504 77-204 (296)
468 PRK05886 yajC preprotein trans 34.1 82 0.0018 28.6 5.0 42 198-240 33-74 (109)
469 TIGR01304 IMP_DH_rel_2 IMP deh 34.0 5.5E+02 0.012 28.1 12.3 111 269-407 103-217 (369)
470 PF01274 Malate_synthase: Mala 33.9 78 0.0017 36.2 6.0 118 278-405 203-364 (526)
471 PLN02935 Bifunctional NADH kin 33.8 36 0.00078 38.6 3.2 35 469-503 377-415 (508)
472 PRK04539 ppnK inorganic polyph 33.8 41 0.00088 35.5 3.5 36 469-504 178-217 (296)
473 TIGR00381 cdhD CO dehydrogenas 33.8 5.6E+02 0.012 28.4 12.1 127 276-428 151-298 (389)
474 PRK00043 thiE thiamine-phospha 33.7 2E+02 0.0044 27.7 8.3 44 104-147 24-67 (212)
475 COG1862 YajC Preprotein transl 33.6 78 0.0017 28.1 4.7 43 197-240 37-79 (97)
476 PRK08206 diaminopropionate amm 33.5 3.2E+02 0.007 29.9 10.6 126 355-504 130-266 (399)
477 PRK07476 eutB threonine dehydr 33.3 5.6E+02 0.012 26.9 12.1 118 355-503 81-203 (322)
478 PRK08197 threonine synthase; V 33.3 3E+02 0.0066 29.9 10.3 86 454-542 109-198 (394)
479 PRK10550 tRNA-dihydrouridine s 33.2 1.1E+02 0.0024 32.5 6.7 70 268-341 151-229 (312)
480 PRK10906 DNA-binding transcrip 33.2 69 0.0015 32.8 5.0 63 456-522 78-141 (252)
481 PRK02155 ppnK NAD(+)/NADH kina 32.9 40 0.00086 35.5 3.3 36 469-504 173-212 (291)
482 PRK12475 thiamine/molybdopteri 32.9 1.6E+02 0.0035 31.6 7.9 67 292-370 81-147 (338)
483 PLN02535 glycolate oxidase 32.9 4.6E+02 0.01 28.6 11.4 33 364-408 278-310 (364)
484 COG2870 RfaE ADP-heptose synth 32.8 2.6E+02 0.0055 31.2 9.3 90 274-370 60-177 (467)
485 PRK13957 indole-3-glycerol-pho 32.7 1.2E+02 0.0026 31.4 6.5 76 258-341 150-235 (247)
486 PRK04147 N-acetylneuraminate l 32.7 3.6E+02 0.0078 28.0 10.4 94 323-428 30-129 (293)
487 COG2070 Dioxygenases related t 32.7 4.6E+02 0.0099 28.2 11.3 113 268-404 93-212 (336)
488 PF04551 GcpE: GcpE protein; 32.7 74 0.0016 34.6 5.2 50 103-155 33-82 (359)
489 cd02071 MM_CoA_mut_B12_BD meth 32.5 1E+02 0.0023 27.7 5.5 44 269-312 41-86 (122)
490 PRK05585 yajC preprotein trans 32.4 97 0.0021 27.8 5.2 41 198-239 47-87 (106)
491 PRK13523 NADPH dehydrogenase N 32.2 2.7E+02 0.0058 29.9 9.4 129 262-405 131-305 (337)
492 PRK07259 dihydroorotate dehydr 32.0 5.9E+02 0.013 26.4 11.9 49 350-408 142-192 (301)
493 PRK02261 methylaspartate mutas 31.9 1.2E+02 0.0026 28.2 6.0 35 270-304 46-82 (137)
494 PRK03512 thiamine-phosphate py 31.8 5.3E+02 0.011 25.7 11.3 133 269-426 70-207 (211)
495 COG0084 TatD Mg-dependent DNas 31.8 3.5E+02 0.0077 28.0 9.9 212 259-518 11-239 (256)
496 TIGR01036 pyrD_sub2 dihydrooro 31.7 4.7E+02 0.01 28.0 11.2 102 293-408 121-247 (335)
497 smart00729 Elp3 Elongator prot 31.6 3.2E+02 0.0068 25.4 9.0 44 99-142 95-147 (216)
498 TIGR02660 nifV_homocitr homoci 31.6 4.5E+02 0.0097 28.4 11.2 127 384-520 71-215 (365)
499 PRK07315 fructose-bisphosphate 31.6 1.2E+02 0.0025 32.1 6.4 55 92-148 79-133 (293)
500 PRK10558 alpha-dehydro-beta-de 31.5 2.9E+02 0.0064 28.4 9.3 87 296-405 10-98 (256)
No 1
>PLN02762 pyruvate kinase complex alpha subunit
Probab=100.00 E-value=1.2e-139 Score=1137.03 Aligned_cols=502 Identities=66% Similarity=1.061 Sum_probs=461.0
Q ss_pred cccccccchhhhhhcccCCCCCceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhcCCce
Q 008172 69 SLGFDAVSEGELREKGFLGLRKTKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEKLFCI 148 (575)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~r~tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~~~~i 148 (575)
.+|.|....+.+.+.|+.++|+|||||||||+|+++|+|++|+++|||+||||||||++|+|+++++++|+++++.|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~rrTKIV~TiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~iR~~~~~~~~~v 84 (509)
T PLN02762 5 GIDVDVVTEAELRENGFRSTRRTKLVCTIGPACCGFEQLEALAMGGMNVARLNMCHGTREWHRDVIRRVRRLNEEKGFAV 84 (509)
T ss_pred cccccccchhhhhhccccCCCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCce
Confidence 35556666777888887668999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCeEEEEecCCCCceEEecCCEEEEEeeccCCC-CCcEEEecccccccccCCCCEEEEeCCeeEEEEEEEECC
Q 008172 149 SVMIDTEGSQIHVVDHGEPNSVKVEEDSIWLFTAIKFEGS-RPFTVKANYAGFSEGIEVGDELVIDGGMASFEVIEKVGN 227 (575)
Q Consensus 149 ~Il~Dl~GpkIRtG~~~~~~~i~l~~G~~v~lt~~~~~~~-~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~ 227 (575)
+||+||||||||+|.+.++.++.|++|+.|+|+.+...+. .++.+++||++|++++++||.||+|||+|.|+|++++++
T Consensus 85 aIl~Dl~GPkIR~g~~~~~~~i~l~~G~~v~lt~~~~~g~~~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~ 164 (509)
T PLN02762 85 AVMMDTEGSEIHMGDLGGASSAKAEDGEEWTFTVRKFDGSRPEFTIQVNYDGFAEDVKVGDELVVDGGMVRFEVIEKIGP 164 (509)
T ss_pred EEEecCCCCceEEEecCCCccEEecCCCEEEEeCCccCCCCCCcEEeechHHHHHhcCCCCEEEEeCCEEEEEEEEEECC
Confidence 9999999999999999765579999999999988754443 247899999999999999999999999999999999999
Q ss_pred eEEEEEecCeEecCCcccccccCcccc-cccccCCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCC-
Q 008172 228 DLRCKCTDPGVFLPRAKLSFRRNGILV-ERNHGLPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSS- 305 (575)
Q Consensus 228 ~i~~~V~~gG~l~s~K~vn~~r~g~~~-~~~~~lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~- 305 (575)
.+.|+|.+||.|+++||||+.++|+.+ ++.+++|.|||||++||+||+++|+|||++||||+++||+++|+++.+.|.
T Consensus 165 ~v~~~v~~~G~l~~~KgvNl~~~g~~~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~a~Dv~~~r~~l~~~g~~ 244 (509)
T PLN02762 165 DVKCKCTDPGLLLPRANLTFWRDGSLVRERNAMLPTISSKDWLDIDFGISEGVDFIAVSFVKSAEVIKHLKSYIAARSRD 244 (509)
T ss_pred EEEEEEEeCcEEcCCCceeeccccCCCCCCccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999997666664 999999999999999999999999999999999999999999999988763
Q ss_pred CCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCCh
Q 008172 306 RSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTR 385 (575)
Q Consensus 306 ~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~Ptr 385 (575)
.+++||||||+++|++|||||++++|||||||||||+|+|+|+||.+||+||++|+++|||||+||||||||++||+|||
T Consensus 245 ~~~~IiAKIE~~~av~nl~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTR 324 (509)
T PLN02762 245 SDIGVIAKIESLDSLKNLEEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTR 324 (509)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCc
Confidence 27999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCCCCCchhhHHHHHHHH
Q 008172 386 AEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSREENRQSALCGQRQLGESLHDRIAEQICNCAVD 465 (575)
Q Consensus 386 AEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~ 465 (575)
||++||||||+||+||+|||||||+|+||+|||++|++||+++|++..+...|..+ ..++.....+.+..+++|.+|++
T Consensus 325 AEvsDVaNAVlDGtDavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~-~~~~~~~~~~~~~~~aia~sa~~ 403 (509)
T PLN02762 325 AEVADVSEAVRQRADALMLSGESAMGLYPEKALSVLRSVSLRMELWSREEKRHEAL-ELPQLSSSLSDRISEEICNSAAK 403 (509)
T ss_pred hhHHHHHHHHHhCCCEEEEcchhcCCCCHHHHHHHHHHHHHHHHhhhhhcchhhhh-hhhccccccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999864322111111 11111111113467999999999
Q ss_pred HHHhcCCcEEEEEcCChhHHHHHhccCCCCcEEEEcCcHHHHHHhcccCCcEEEEecCCCCHHHHHHHHHHHHHHcCCCC
Q 008172 466 MANNLGVDAIFVYTKHGHMASLLSRNRPNPPIFAFTNDDSTRMALNLQWGVIPVLVNLSDDMETNIAKTIDLIKMKGMVK 545 (575)
Q Consensus 466 ~a~~~~AkaIVVfT~SG~TAr~VSr~RP~~PIiAvT~~~~~aR~L~L~~GV~Pvl~~~~~d~d~~i~~al~~~~~~g~~k 545 (575)
+|.+++|++||+||.||+||+++|||||.+||||+|++++++|||+|+|||+|++.++..+.+++++.+++++++.|+++
T Consensus 404 ~A~~l~a~aIv~~T~sG~tA~~iSk~RP~~pIia~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~g~~~ 483 (509)
T PLN02762 404 MANNLGVDAIFVYTKHGHMASLLSRNRPDCPIFAFTDTTSVRRRLNLQWGLIPFRLDFSDDMESNLNKTFSLLKARGMIK 483 (509)
T ss_pred HHhhcCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred CCCEEEEEecCCCCCCCccccceEEEEEcC
Q 008172 546 YGDAVLVVLDLTPAHVTSTAFQSIQVKTIV 575 (575)
Q Consensus 546 ~GD~VVvv~G~~~~~g~t~~~~~i~v~~v~ 575 (575)
+||.||+++|+|. +|+| |+|+|++||
T Consensus 484 ~GD~VVv~~g~~~-~g~t---n~i~v~~v~ 509 (509)
T PLN02762 484 SGDLVIAVSDLTP-SSML---QSIQVRNVP 509 (509)
T ss_pred CCCEEEEEeCCCC-CCCc---eEEEEEEcC
Confidence 9999999999998 8888 999999997
No 2
>PTZ00066 pyruvate kinase; Provisional
Probab=100.00 E-value=3e-135 Score=1102.15 Aligned_cols=476 Identities=32% Similarity=0.495 Sum_probs=442.6
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhc-CCceEEEEeCCCCeEEEEec
Q 008172 86 LGLRKTKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEK-LFCISVMIDTEGSQIHVVDH 164 (575)
Q Consensus 86 ~~~r~tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~-~~~i~Il~Dl~GpkIRtG~~ 164 (575)
.++|+|||||||||+|+++|+|++|+++|||+||||||||++|+|.++++++|+++++. +++++||+||||||||+|.+
T Consensus 35 ~~~rktKIi~TiGPas~~~e~l~~mi~aGm~v~RlN~SHg~~e~~~~~i~~vR~~~~~~~~~~iaIl~Dl~GPkiR~g~~ 114 (513)
T PTZ00066 35 LRQKKTHIVCTMGPACKNVETLVKLIDAGMNICRFNFSHGDHESHKKTLNNVREAAKARPNANLGILLDTKGPEIRTGFL 114 (513)
T ss_pred ccCCCCeEEEeeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCceEEEeeCCCCceeeccc
Confidence 45789999999999999999999999999999999999999999999999999999995 89999999999999999999
Q ss_pred CCCCceEEecCCEEEEEeeccCCCCCcEEEecccccccccCCCCEEEEeCCeeEEEEEEEECCeEEEEEecCeEecCCcc
Q 008172 165 GEPNSVKVEEDSIWLFTAIKFEGSRPFTVKANYAGFSEGIEVGDELVIDGGMASFEVIEKVGNDLRCKCTDPGVFLPRAK 244 (575)
Q Consensus 165 ~~~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~i~~~V~~gG~l~s~K~ 244 (575)
.+++++.|++|+.++|+.+....++++.+++||++|++++++||+||+|||+|.|+|.+++++.+.|+|.+||.|+++||
T Consensus 115 ~~~~~i~l~~G~~~~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~v~~gG~l~~~Kg 194 (513)
T PTZ00066 115 KNHKPITLKEGQTLKITTDYTFLGDETCISCSYKKLPQSVKVGNIILIADGSLSCKVLEVHDDYIITKVLNNATIGERKN 194 (513)
T ss_pred CCCCeEEeCCCCEEEEecCCccCCCCcEEecchHHHHhhccCCCEEEEeCCEEEEEEEEEECCEEEEEEEeCcEEcCCcc
Confidence 75457999999999998774333345789999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccccccccCCCCCccCHHHH-HHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcH
Q 008172 245 LSFRRNGILVERNHGLPTLSKKDWDDI-EFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKF 323 (575)
Q Consensus 245 vn~~r~g~~~~~~~~lp~lsekD~~di-~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nl 323 (575)
+|+ ||+.+++|.|||||++|| +||+++|+|||++||||+++||+++|+++++.| ++++||||||+++|++||
T Consensus 195 vnl------pg~~~~lp~ltekD~~dI~~f~~~~~vD~IalSFVr~a~DI~~~r~~l~~~g-~~~~IiAKIE~~~av~Nl 267 (513)
T PTZ00066 195 MNL------PGVKVELPVIGEKDKNDILNFAIPMGCDFIALSFVQSADDVRLCRQLLGERG-RHIKIIPKIENIEGLINF 267 (513)
T ss_pred ccc------CCCccCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHhCC-CCceEEEEECCHHHHHHH
Confidence 997 578899999999999998 899999999999999999999999999998886 689999999999999999
Q ss_pred HHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEE
Q 008172 324 EEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALM 403 (575)
Q Consensus 324 deI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vm 403 (575)
|||++++|||||||||||+|+|+|+||.+||+||++|+++|||||+||||||||++||+|||||++||||||+||+||+|
T Consensus 268 deIl~~sDGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~DavM 347 (513)
T PTZ00066 268 DEILAESDGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVM 347 (513)
T ss_pred HHHHHhcCEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCcCCCCCHHHHHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcCCcEEEEEcCChh
Q 008172 404 LSGESAIGPFGQKAVSVLQMASSRMELWSREENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLGVDAIFVYTKHGH 483 (575)
Q Consensus 404 Ls~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~AkaIVVfT~SG~ 483 (575)
||||||+|+||+|||++|++|+++||++..+...|... ..+ ...+.+..+++|.+|+++|.+++|++||+||.||+
T Consensus 348 LSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~--~~~--~~~~~~~~~~ia~aa~~~A~~l~a~aIv~~T~SG~ 423 (513)
T PTZ00066 348 LSGETANGKFPVEAVNIMAKICFEAETCIDYRVLYHAI--HLA--VPTPVSVQEAVARSAVETAEDINAKLIIALTETGN 423 (513)
T ss_pred ecchhcCCcCHHHHHHHHHHHHHHHhhccchHHhhhhh--hcc--ccCCCchhhHHHHHHHHHHHhCCCCEEEEECCCcH
Confidence 99999999999999999999999999865433222111 000 11122346899999999999999999999999999
Q ss_pred HHHHHhccCCCCcEEEEcCcHHHHHHhcccCCcEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCC-CCC
Q 008172 484 MASLLSRNRPNPPIFAFTNDDSTRMALNLQWGVIPVLVNLSDDMETNIAKTIDLIKMKGMVKYGDAVLVVLDLTPA-HVT 562 (575)
Q Consensus 484 TAr~VSr~RP~~PIiAvT~~~~~aR~L~L~~GV~Pvl~~~~~d~d~~i~~al~~~~~~g~~k~GD~VVvv~G~~~~-~g~ 562 (575)
||+++|||||.+||||+|++++++|||+|+|||+|++++...+.+++++.|++++++.|++++||.||+++|+|.+ .|+
T Consensus 424 TAr~iSk~RP~~pIia~t~~~~~~R~L~L~wGV~p~~~~~~~~~~~~i~~a~~~~~~~g~~~~GD~vVv~~g~~~~~~g~ 503 (513)
T PTZ00066 424 TARLISKYRPSCTILALSASPSVVKSLSVARGVTTYVVNSFQGTDVVIRNAIALAKERGLVESGDSAIAVHGVKEEVAGS 503 (513)
T ss_pred HHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCC
Confidence 9999999999999999999999999999999999999988888999999999999999999999999999999865 687
Q ss_pred ccccceEEEEEcC
Q 008172 563 STAFQSIQVKTIV 575 (575)
Q Consensus 563 t~~~~~i~v~~v~ 575 (575)
| |++||++||
T Consensus 504 t---n~irv~~v~ 513 (513)
T PTZ00066 504 S---NLMKVVKIP 513 (513)
T ss_pred C---eEEEEEEcC
Confidence 7 999999998
No 3
>PRK09206 pyruvate kinase; Provisional
Probab=100.00 E-value=1.3e-132 Score=1077.11 Aligned_cols=470 Identities=34% Similarity=0.523 Sum_probs=439.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCeEEEEecCCC
Q 008172 88 LRKTKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEKLFCISVMIDTEGSQIHVVDHGEP 167 (575)
Q Consensus 88 ~r~tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkIRtG~~~~~ 167 (575)
||+|||||||||+|+++|+|++|+++|||+||||||||++++|.++++++|+++++.|++++|++||||||||+|.+.++
T Consensus 1 mr~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~sHg~~~~~~~~i~~vr~~~~~~~~~i~Il~Dl~GPkiR~g~~~~~ 80 (470)
T PRK09206 1 MKKTKIVCTIGPKTESEEMLTKLLDAGMNVMRLNFSHGDYAEHGQRIKNLRNVMSKTGKKAAILLDTKGPEIRTMKLEGG 80 (470)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCCCCceeccccCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CceEEecCCEEEEEeeccCCCCCcEEEecccccccccCCCCEEEEeCCeeEEEEEEEECCeEEEEEecCeEecCCccccc
Q 008172 168 NSVKVEEDSIWLFTAIKFEGSRPFTVKANYAGFSEGIEVGDELVIDGGMASFEVIEKVGNDLRCKCTDPGVFLPRAKLSF 247 (575)
Q Consensus 168 ~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~i~~~V~~gG~l~s~K~vn~ 247 (575)
.++.|++|+.++|+.+....++++.++++|++|++.+++||.||+|||+|.|+|.+++++.+.|+|++||.|+++||+|+
T Consensus 81 ~~i~l~~G~~~~l~~~~~~~~~~~~i~~~~~~~~~~v~~G~~i~idDG~i~l~V~~~~~~~v~~~v~~~G~l~s~Kgvn~ 160 (470)
T PRK09206 81 NDVSLKAGQTFTFTTDKSVVGNKERVAVTYEGFTADLSVGNTVLVDDGLIGMEVTAITGNEVICKVLNNGDLGENKGVNL 160 (470)
T ss_pred CeeeecCCCEEEEEecCccCCCCCEEEechHHHHhhcCCCCEEEEeCCEEEEEEEEEeCCEEEEEEEECCEecCCCceec
Confidence 56999999999998774333345789999999999999999999999999999999999999999999999999999996
Q ss_pred ccCcccccccccCCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHH
Q 008172 248 RRNGILVERNHGLPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIV 327 (575)
Q Consensus 248 ~r~g~~~~~~~~lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~ 327 (575)
||+.+++|.|||||++||+||+++|+|||++||||+++|++++++++...+.+++.||||||+++|++|||||+
T Consensus 161 ------p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl 234 (470)
T PRK09206 161 ------PGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEIL 234 (470)
T ss_pred ------cCcccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHH
Confidence 57889999999999999999999999999999999999999999999887645899999999999999999999
Q ss_pred hcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccC
Q 008172 328 EASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGE 407 (575)
Q Consensus 328 ~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~E 407 (575)
+++|||||||||||+|+|.+++|.+||+|+++|+++|||||+||||||||++||+|||||++||||||+||+||+|||+|
T Consensus 235 ~~~DgImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~E 314 (470)
T PRK09206 235 EASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGE 314 (470)
T ss_pred HhCCEEEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEech
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcCCcEEEEEcCChhHHHH
Q 008172 408 SAIGPFGQKAVSVLQMASSRMELWSREENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLGVDAIFVYTKHGHMASL 487 (575)
Q Consensus 408 Ta~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~AkaIVVfT~SG~TAr~ 487 (575)
||+|+||+|||++|++|++++|++..+. +... .. ....+..+++|.+|+++|.+++|++||+||.||+||++
T Consensus 315 TA~G~yPveaV~~m~~I~~~~E~~~~~~--~~~~---~~---~~~~~~~~~ia~sa~~~A~~l~a~aIv~~T~sG~tA~~ 386 (470)
T PRK09206 315 SAKGKYPLEAVSIMATICERTDRVMNSR--LESN---ND---NRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARS 386 (470)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHhhcchh--hhhh---cc---ccCCChHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHH
Confidence 9999999999999999999999864322 1111 00 11125679999999999999999999999999999999
Q ss_pred HhccCCCCcEEEEcCcHHHHHHhcccCCcEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCccccc
Q 008172 488 LSRNRPNPPIFAFTNDDSTRMALNLQWGVIPVLVNLSDDMETNIAKTIDLIKMKGMVKYGDAVLVVLDLTPAHVTSTAFQ 567 (575)
Q Consensus 488 VSr~RP~~PIiAvT~~~~~aR~L~L~~GV~Pvl~~~~~d~d~~i~~al~~~~~~g~~k~GD~VVvv~G~~~~~g~t~~~~ 567 (575)
+|||||.+||||+|++++++|||+|+|||+|++++...+.+++++.+++++++.|++++||.||+++|++...|+| |
T Consensus 387 is~~RP~~pIia~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~~~~Gd~vvv~~g~~~~~g~t---n 463 (470)
T PRK09206 387 VRKYFPDATILALTTNEKTARQLVLSKGVVPQLVKEIASTDDFYRLGKELALQSGLAQKGDVVVMVSGALVPSGTT---N 463 (470)
T ss_pred HHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCC---e
Confidence 9999999999999999999999999999999999887889999999999999999999999999999997556777 9
Q ss_pred eEEEEEc
Q 008172 568 SIQVKTI 574 (575)
Q Consensus 568 ~i~v~~v 574 (575)
+++|+++
T Consensus 464 ~i~v~~~ 470 (470)
T PRK09206 464 TASVHVL 470 (470)
T ss_pred EEEEEEC
Confidence 9999864
No 4
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-132 Score=1067.58 Aligned_cols=473 Identities=36% Similarity=0.571 Sum_probs=445.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCeEEEEecC
Q 008172 86 LGLRKTKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEKLFCISVMIDTEGSQIHVVDHG 165 (575)
Q Consensus 86 ~~~r~tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkIRtG~~~ 165 (575)
.++|+|||||||||+|+++|+|++|+++||||||||||||++|+|.+.++++|++++++|+|++||+||||||||+|.|.
T Consensus 2 ~~~~kTKIVaTiGPas~s~e~l~~li~aG~nV~RlNfSHG~~e~h~~~i~~vR~~~~~~~~~vaIl~DlkGPkIR~g~~~ 81 (477)
T COG0469 2 RMMRKTKIVATLGPATESEEMLEKLIEAGMNVVRLNFSHGDHEEHKKRIDNVREAAEKLGRPVAILLDLKGPKIRTGKFK 81 (477)
T ss_pred CCCccceEEEEECCCCCCHHHHHHHHHccCcEEEEecCCCChHHHHHHHHHHHHHHHHhCCceEEEEcCCCCcceeEecC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCceEEecCCEEEEEeeccCC-CCCcEEEecccccccccCCCCEEEEeCCeeEEEEEEEECCeEEEEEecCeEecCCcc
Q 008172 166 EPNSVKVEEDSIWLFTAIKFEG-SRPFTVKANYAGFSEGIEVGDELVIDGGMASFEVIEKVGNDLRCKCTDPGVFLPRAK 244 (575)
Q Consensus 166 ~~~~i~l~~G~~v~lt~~~~~~-~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~i~~~V~~gG~l~s~K~ 244 (575)
+ ..+.|++|++|+|+.+...+ +.++.++++|++|+++|++||+||+|||+++|+|.++.++.+.|+|.+||.|+++||
T Consensus 82 ~-~~~~l~~G~~~~~~~~~~~~~~~~~~v~v~y~~l~~dV~~G~~iLlDDG~i~l~V~~v~~~~v~~~v~n~G~l~~~Kg 160 (477)
T COG0469 82 G-GAVELEKGEKFTLTTDDKVGEGDEERVSVDYKDLAKDVKPGDRILLDDGKIELRVVEVDGDAVITRVLNGGVLSSNKG 160 (477)
T ss_pred C-CcEEeecCCEEEEeccccccCCCCcEEeccHHHHHhhcCCCCEEEEeCCeeEEEEEEeeCCEEEEEEEeCCCccCCCc
Confidence 6 56999999999999887632 235799999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccccccccCCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHH
Q 008172 245 LSFRRNGILVERNHGLPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFE 324 (575)
Q Consensus 245 vn~~r~g~~~~~~~~lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nld 324 (575)
||+ ||..+++|+|||||++||+|++++|+|||++||||+++|+.++|+++.+.++.+++||||||+++||+|||
T Consensus 161 vN~------pg~~l~~palteKD~~dl~f~~~~gvD~vA~SFVr~~~Dv~~~R~~l~~~~~~~~~iiaKIE~~eav~Nld 234 (477)
T COG0469 161 VNL------PGVDLSLPALTEKDKEDLKFGLEQGVDFVALSFVRNAEDVEEVREILAETGGRDVKIIAKIENQEAVDNLD 234 (477)
T ss_pred eec------CCCCCCCCCCCccCHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCCCceEEEeecCHHHHhHHH
Confidence 996 58889999999999999999999999999999999999999999999888767799999999999999999
Q ss_pred HHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEe
Q 008172 325 EIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALML 404 (575)
Q Consensus 325 eI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmL 404 (575)
||+++||||||||||||+|+|.++||.+||+||++||++|||||+||||||||++||+|||||++||||||+||+||+||
T Consensus 235 eIi~~SDGIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanAvlDGtDAvML 314 (477)
T COG0469 235 EIIEASDGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVML 314 (477)
T ss_pred HHHHhcCceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCCCchhhhHHHHHHHhCCceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCCCCCHHHHHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcCCcEEEEEcCChhH
Q 008172 405 SGESAIGPFGQKAVSVLQMASSRMELWSREENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLGVDAIFVYTKHGHM 484 (575)
Q Consensus 405 s~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~AkaIVVfT~SG~T 484 (575)
|+|||.|+||+|||++|++|+.++|+.......+... ......+..++++.+++++|..+++++||++|.||+|
T Consensus 315 S~ETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~------~~~~~~~~~e~ia~aa~~~a~~l~~k~iv~~T~sG~t 388 (477)
T COG0469 315 SGETAAGKYPVEAVATMARIAKEAEKELPDNQLLRFR------VDPPDSSITEAIALAAVDIAEKLDAKAIVTLTESGRT 388 (477)
T ss_pred chhhhcCCCHHHHHHHHHHHHHHHhcccchhhhhhhc------cccccccHHHHHHHHHHHHHHhcCCcEEEEEcCCCHH
Confidence 9999999999999999999999999876522111110 1122345789999999999999999999999999999
Q ss_pred HHHHhccCCCCcEEEEcCcHHHHHHhcccCCcEEEEec-CCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCC-CCC
Q 008172 485 ASLLSRNRPNPPIFAFTNDDSTRMALNLQWGVIPVLVN-LSDDMETNIAKTIDLIKMKGMVKYGDAVLVVLDLTPA-HVT 562 (575)
Q Consensus 485 Ar~VSr~RP~~PIiAvT~~~~~aR~L~L~~GV~Pvl~~-~~~d~d~~i~~al~~~~~~g~~k~GD~VVvv~G~~~~-~g~ 562 (575)
|+++|||||.+||||+||+++++|+|+|+|||+|++++ +..+.+++++.+++.+.+.|+++.||.||+++|.|.+ .|.
T Consensus 389 a~~isk~Rp~~pIia~t~~~~v~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gD~vvit~G~~~~~~G~ 468 (477)
T COG0469 389 ARLLSKYRPEAPIIALTPNERVARRLALVWGVYPLLVEEKPTSTDEMVEEAVEKLLESGLVKKGDLVVITAGVPMGTVGT 468 (477)
T ss_pred HHHHhcCCCCCcEEEECCCHHHHhhhceeecceeEEecCCCCcHHHHHHHHHHHHHhcCcccCCCEEEEecCcccccCCC
Confidence 99999999999999999999999999999999999998 5889999999999999999999999999999999885 787
Q ss_pred ccccceEEEEEc
Q 008172 563 STAFQSIQVKTI 574 (575)
Q Consensus 563 t~~~~~i~v~~v 574 (575)
| |+|||+.|
T Consensus 469 t---n~ikv~~v 477 (477)
T COG0469 469 T---NTIKVLTV 477 (477)
T ss_pred c---eeEEEEeC
Confidence 7 99999875
No 5
>PLN02461 Probable pyruvate kinase
Probab=100.00 E-value=4.6e-131 Score=1070.41 Aligned_cols=470 Identities=31% Similarity=0.496 Sum_probs=434.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCeEEEEecCC
Q 008172 87 GLRKTKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEKLFCISVMIDTEGSQIHVVDHGE 166 (575)
Q Consensus 87 ~~r~tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkIRtG~~~~ 166 (575)
++|+|||||||||+|+++|+|++|+++|||+||||||||++|+|.++++++|+++++.|++++||+||||||||+|.+.+
T Consensus 19 ~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~h~~~i~~vr~~~~~~g~~i~Il~Dl~GPkIR~g~~~~ 98 (511)
T PLN02461 19 RRPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGSHEYHQETLDNLRQAMANTGILCAVMLDTKGPEIRTGFLKD 98 (511)
T ss_pred cCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCeEEEeeCCCCceeccccCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCceEEecCCEEEEEeeccCCCCCcEEEecccccccccCCCCEEEEeCCeeEEEEEEEE--CCeEEEEEecCeEecCCcc
Q 008172 167 PNSVKVEEDSIWLFTAIKFEGSRPFTVKANYAGFSEGIEVGDELVIDGGMASFEVIEKV--GNDLRCKCTDPGVFLPRAK 244 (575)
Q Consensus 167 ~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~--~~~i~~~V~~gG~l~s~K~ 244 (575)
+.++.|++|+.++|+.+....++++.+++||++|++.+++||+||+|||+|.|+|.+++ ++.+.|+|.+||.|+++||
T Consensus 99 ~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~~~~~v~~Gd~IlidDG~i~l~V~~~~~~~~~i~~~v~~gG~l~s~Kg 178 (511)
T PLN02461 99 GKPVQLKQGQEITITTDYSIKGDENMIAMSYKKLAVDVKPGSVILCADGTITLTVLSCDVEAGTVRCRCENSAMLGERKN 178 (511)
T ss_pred CCceecCCCCEEEEecCCccCCCCCEEEeccHHHHhhcCCCCEEEEeCCEEEEEEEEEecCCCEEEEEEecCcEecCCce
Confidence 55799999999999877433334578999999999999999999999999999999987 6899999999999999999
Q ss_pred cccccCcccccccccCCCCCccCHHHH-HHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcH
Q 008172 245 LSFRRNGILVERNHGLPTLSKKDWDDI-EFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKF 323 (575)
Q Consensus 245 vn~~r~g~~~~~~~~lp~lsekD~~di-~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nl 323 (575)
+|+ ||+.+++|.|||||++|| +||+++|+|||++||||+++||+++|+++.+.+ .++.||||||+++|++||
T Consensus 179 vnl------pg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DV~~~r~~l~~~~-~~~~IiAKIE~~~av~nl 251 (511)
T PLN02461 179 VNL------PGVVVDLPTLTEKDKEDILQWGVPNKIDFIALSFVRKGSDLVEVRKVLGEHA-KSILLISKVENQEGLDNF 251 (511)
T ss_pred eee------cccccCCCCCCHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHHhCC-CCCCEEEEECCHHHHHHH
Confidence 997 578899999999999998 799999999999999999999999999998776 689999999999999999
Q ss_pred HHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEE
Q 008172 324 EEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALM 403 (575)
Q Consensus 324 deI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vm 403 (575)
|||++++|||||||||||+|+|+|+||.+||+||+.|+++|||||+||||||||++||+|||||++||||||+||+||+|
T Consensus 252 ~eIi~~sDgIMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~dG~D~vM 331 (511)
T PLN02461 252 DDILAESDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVM 331 (511)
T ss_pred HHHHHhcCEEEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHHHhCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCcCCCCCHHHHHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcCCcEEEEEcCChh
Q 008172 404 LSGESAIGPFGQKAVSVLQMASSRMELWSREENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLGVDAIFVYTKHGH 483 (575)
Q Consensus 404 Ls~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~AkaIVVfT~SG~ 483 (575)
||+|||+|+||+|||++|++|+++||++..+...|... ... ...+.+..+++|.+|+++|.+++|++||+||+||+
T Consensus 332 LS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~--~~~--~~~~~~~~~~ia~sav~~A~~l~a~aIiv~T~sG~ 407 (511)
T PLN02461 332 LSGETAAGAYPELAVKTMARICREAEASLDYGALFKEI--MRS--APLPMSPLESLASSAVRTANKVKASLIVVLTRGGT 407 (511)
T ss_pred EechhcCCCCHHHHHHHHHHHHHHHHhccchhhhhhhh--ccc--ccccCChHHHHHHHHHHHHHhCCCCEEEEECCCcH
Confidence 99999999999999999999999999864332212111 000 11122467899999999999999999999999999
Q ss_pred HHHHHhccCCCCcEEEEcCc-------------HHHHHHhcccCCcEEEEecC------CCCHHHHHHHHHHHHHHcCCC
Q 008172 484 MASLLSRNRPNPPIFAFTND-------------DSTRMALNLQWGVIPVLVNL------SDDMETNIAKTIDLIKMKGMV 544 (575)
Q Consensus 484 TAr~VSr~RP~~PIiAvT~~-------------~~~aR~L~L~~GV~Pvl~~~------~~d~d~~i~~al~~~~~~g~~ 544 (575)
||+++|||||.+||||+|++ ++++|||+|+|||+|++++. ..+.+++++.|++++++.|++
T Consensus 408 tA~~iSk~RP~~pIia~t~~~~~~~~~~w~~~~~~~ar~l~L~~GV~P~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~ 487 (511)
T PLN02461 408 TARLVAKYRPAVPILSVVVPEITTDSFDWSCSDEAPARHSLIYRGLIPVLAEGSAKATDSESTEEILEAAIEHAKKKGLC 487 (511)
T ss_pred HHHHHHhhCCCCCEEEEecCcccccccccccCCHHHhhhhheecceEEEEecccccccccCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999966 99999999999999998864 468899999999999999999
Q ss_pred CCCCEEEEEecCCCCCCCccccceEEEEEc
Q 008172 545 KYGDAVLVVLDLTPAHVTSTAFQSIQVKTI 574 (575)
Q Consensus 545 k~GD~VVvv~G~~~~~g~t~~~~~i~v~~v 574 (575)
++||.||+++|+ |.| |+++|.++
T Consensus 488 ~~Gd~vvvv~~~----g~t---n~i~v~~v 510 (511)
T PLN02461 488 KPGDSVVALHRI----GGA---SVIKILTV 510 (511)
T ss_pred CCcCEEEEEecC----CCC---cEEEEEEe
Confidence 999999999983 667 99999886
No 6
>PRK06247 pyruvate kinase; Provisional
Probab=100.00 E-value=6.4e-131 Score=1062.91 Aligned_cols=469 Identities=32% Similarity=0.502 Sum_probs=438.2
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCeEEEEecC
Q 008172 86 LGLRKTKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEKLFCISVMIDTEGSQIHVVDHG 165 (575)
Q Consensus 86 ~~~r~tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkIRtG~~~ 165 (575)
.++|+|||||||||+|+++|+|++|+++|||+||||||||++|+|+++++++|+++++.|++++|++||||||||+|.+.
T Consensus 2 ~~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~~~~~i~~vr~~~~~~~~~i~Il~Dl~GpkiR~g~~~ 81 (476)
T PRK06247 2 KRNRRVKILATLGPASSSEDMIRKLVEAGADVFRLNFSHGDHDDHRELYKRIREVEDETGRPIGILADLQGPKLRLGRFA 81 (476)
T ss_pred CCCCCceEEEEECCCcCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCeeEEEeCCCCceeccccC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCceEEecCCEEEEEeeccCCCCCcEEEecccccccccCCCCEEEEeCCeeEEEEEEEECCeEEEEEecCeEecCCccc
Q 008172 166 EPNSVKVEEDSIWLFTAIKFEGSRPFTVKANYAGFSEGIEVGDELVIDGGMASFEVIEKVGNDLRCKCTDPGVFLPRAKL 245 (575)
Q Consensus 166 ~~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~i~~~V~~gG~l~s~K~v 245 (575)
+ .++.|++|+.++|+.++..+ +++.+++||++|++++++||+|++|||+|.|+|++++++.+.|+|.+||.|+++||+
T Consensus 82 ~-~~i~l~~G~~~~l~~~~~~~-~~~~i~v~~~~l~~~v~~G~~I~idDG~i~l~V~~~~~~~i~~~v~~~G~l~~~Kgv 159 (476)
T PRK06247 82 D-GKVQLANGQTFRLDVDDAPG-DHDRVSLPHPEIAAALKPGDRLLVDDGKVRLVVEACDGDDVVCRVVEGGPVSDRKGV 159 (476)
T ss_pred C-CcEeccCCCEEEEEecccCC-CCCEeecChhHhHhhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeCcEEcCCCcc
Confidence 4 46999999999998875444 457899999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccccccccCCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHH
Q 008172 246 SFRRNGILVERNHGLPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEE 325 (575)
Q Consensus 246 n~~r~g~~~~~~~~lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nlde 325 (575)
|+ |++.+++|.|||||++||+||+++|+|||++||||+++|++++|++++ +++.||||||+++|++||||
T Consensus 160 n~------p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFVr~a~Di~~~r~~l~----~~~~iiaKIEt~eav~nlde 229 (476)
T PRK06247 160 SL------PGTVLSVSALTEKDRADLEFALELGVDWVALSFVQRPEDVEEVRKIIG----GRVPVMAKIEKPQAIDRLEA 229 (476)
T ss_pred cc------CCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhh----hcCeEEEEECCHHHHHhHHH
Confidence 97 478899999999999999999999999999999999999999999994 46899999999999999999
Q ss_pred HHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 326 IVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 326 I~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
|++++|||||||||||+++|++++|.+||+|+++|+++|||+|+||||||||++||+|||||++||||||+||+||+|||
T Consensus 230 I~~~~DgImVaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~DavMLS 309 (476)
T PRK06247 230 IVEASDAIMVARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAVMLS 309 (476)
T ss_pred HHHHcCEEEEccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCCcEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCCCCHHHHHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcCCcEEEEEcCChhHH
Q 008172 406 GESAIGPFGQKAVSVLQMASSRMELWSREENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLGVDAIFVYTKHGHMA 485 (575)
Q Consensus 406 ~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~AkaIVVfT~SG~TA 485 (575)
+|||+|+||+|||++|++|++++|++..+...+... . .....+..+++|.+|+++|.++++++||+||.||+||
T Consensus 310 ~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~----~--~~~~~~~~~~ia~sa~~~A~~l~a~~Iv~~T~sG~ta 383 (476)
T PRK06247 310 AETASGKYPVEAVRTMARIIRQVERDPTYPPLIHAQ----R--PQPEATKRDAISYAARDIAERLDLAALVAYTSSGDTA 383 (476)
T ss_pred chhcCCCCHHHHHHHHHHHHHHHhhccchhhhhhhc----c--cccCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCcHHH
Confidence 999999999999999999999999864332111110 1 0111346789999999999999999999999999999
Q ss_pred HHHhccCCCCcEEEEcCcHHHHHHhcccCCcEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCC-CCCcc
Q 008172 486 SLLSRNRPNPPIFAFTNDDSTRMALNLQWGVIPVLVNLSDDMETNIAKTIDLIKMKGMVKYGDAVLVVLDLTPA-HVTST 564 (575)
Q Consensus 486 r~VSr~RP~~PIiAvT~~~~~aR~L~L~~GV~Pvl~~~~~d~d~~i~~al~~~~~~g~~k~GD~VVvv~G~~~~-~g~t~ 564 (575)
+++|||||.+||||+|++++++|+|+|+|||+|++++...+.+++++.+++++++.|++++||.||+++|+|.+ .|.|
T Consensus 384 ~~isk~RP~~pI~a~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~~~~Gd~vvv~~g~~~~~~g~t- 462 (476)
T PRK06247 384 LRAARERPPLPILALTPNPETARRLALTWGVHCVVVDDARDTDDMVRRADRIALAEGFYKRGDRVVIVAGVPPGTPGST- 462 (476)
T ss_pred HHHHhhCCCCCEEEECCCHHHHHHhhcccCCeeEecCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCC-
Confidence 99999999999999999999999999999999999988889999999999999999999999999999999875 6777
Q ss_pred ccceEEEEEcC
Q 008172 565 AFQSIQVKTIV 575 (575)
Q Consensus 565 ~~~~i~v~~v~ 575 (575)
|+++|++|+
T Consensus 463 --n~i~v~~v~ 471 (476)
T PRK06247 463 --NMLRIAYIG 471 (476)
T ss_pred --eEEEEEEeC
Confidence 999999873
No 7
>PLN02765 pyruvate kinase
Probab=100.00 E-value=1.8e-129 Score=1058.24 Aligned_cols=468 Identities=26% Similarity=0.423 Sum_probs=428.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCeEEEEecCCCC
Q 008172 89 RKTKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEKLFCISVMIDTEGSQIHVVDHGEPN 168 (575)
Q Consensus 89 r~tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkIRtG~~~~~~ 168 (575)
|+|||||||||+|+++|+|++|+++||||||||||||++|+|.++++++|+++++.++|++||+||||||||+|.+.+ +
T Consensus 28 ~~tKIVaTiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~vR~~~~~~~~~vaIl~Dl~GPkIR~g~~~~-~ 106 (526)
T PLN02765 28 ALTKIVGTLGPKSRSVEVIEACLKAGMSVARFDFSWGDAEYHQETLENLKIAVKNTKKLCAVMLDTVGPELQVINKTE-K 106 (526)
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCceeeeecCC-C
Confidence 459999999999999999999999999999999999999999999999999999999999999999999999999965 5
Q ss_pred ceEEecCCEEEEEeeccCCCCCcEEEecccccccccCCCCEEEEeCC--------eeEEEEEEEECCeEEEEEecCeEec
Q 008172 169 SVKVEEDSIWLFTAIKFEGSRPFTVKANYAGFSEGIEVGDELVIDGG--------MASFEVIEKVGNDLRCKCTDPGVFL 240 (575)
Q Consensus 169 ~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG--------~i~l~V~~~~~~~i~~~V~~gG~l~ 240 (575)
++.|++|+.++|+.+....++++.+++||++|++.+++||+||+||| +|+|+|+++.++.+.|+|.+||.|+
T Consensus 107 ~i~l~~G~~~~l~~~~~~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~~~g~~dg~i~l~V~~~~~~~v~~~v~~gG~L~ 186 (526)
T PLN02765 107 PISLKAGNTVTLTPDQSKEASSEVLPINFPGLAKAVKPGDTIFVGQYLFTGSETTSVWLEVDEVKGDDVVCTVKNSATLA 186 (526)
T ss_pred cEecCCCCEEEEecccccCCCCCEEeechHHHHhhcCCCCEEEECCcccccccCceEEEEEEEEECCEEEEEEEeCcEEC
Confidence 79999999999987653233457899999999999999999999987 8999999999999999999999999
Q ss_pred CC-cccccccCcccccccccCCCCCccCHHHH-HHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHH
Q 008172 241 PR-AKLSFRRNGILVERNHGLPTLSKKDWDDI-EFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLE 318 (575)
Q Consensus 241 s~-K~vn~~r~g~~~~~~~~lp~lsekD~~di-~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~ 318 (575)
++ ||+|+ |++.+++|.|||||++|| +||+++|+|||++||||+++||.++|+++.+.|..++.||||||+++
T Consensus 187 s~~kgvnl------pg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DI~~~r~~l~~~g~~~~~IiaKIE~~~ 260 (526)
T PLN02765 187 GSLFTLHV------SQVRIDLPTLSEKDKEVISTWGVPNKIDFLSLSYTRHAEDVREAREFLSSLGLSQTQIFAKIENVE 260 (526)
T ss_pred CCccceeC------CCCcCCCCCCcHhHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCCCcEEEEECCHH
Confidence 95 89997 478899999999999999 69999999999999999999999999999887644799999999999
Q ss_pred HHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcc
Q 008172 319 SLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQY 398 (575)
Q Consensus 319 av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G 398 (575)
|++|||||++++|||||||||||+|+|+|+||.+||+||++|+++|||||+ |||||||++||+|||||++||||||+||
T Consensus 261 av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~-TQmLeSMi~np~PTRAEvsDVaNAV~DG 339 (526)
T PLN02765 261 GLTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDG 339 (526)
T ss_pred HHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeEE-ehhhhHHhhCCCCChhhHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999996 9999999999999999999999999999
Q ss_pred cceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcCCcEEEEE
Q 008172 399 ADALMLSGESAIGPFGQKAVSVLQMASSRMELWSREENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLGVDAIFVY 478 (575)
Q Consensus 399 ~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~AkaIVVf 478 (575)
+||+|||+|||+|+||+|||++|++|++++|++..+...+... ... ...+.+..+++|.+|+++|.+++|++||||
T Consensus 340 aDavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~--~~~--~~~~~~~~~aia~sav~~A~~l~a~aIvv~ 415 (526)
T PLN02765 340 ADAILLGAETLRGLYPVETISTVGRICAEAEKVFNQDLYFKKT--VKY--VGEPMSHLESIASSAVRAAIKVKASVIIVF 415 (526)
T ss_pred CCEEEecchhcCCCCHHHHHHHHHHHHHHHHhhcchhhhhhhh--hcc--cccCCCHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 9999999999999999999999999999999864432222110 000 011223568999999999999999999999
Q ss_pred cCChhHHHHHhccCCCCcEEEEc-Cc------------HHHHHHhcccCCcEEEEecCCCC-------HHHHHHHHHHHH
Q 008172 479 TKHGHMASLLSRNRPNPPIFAFT-ND------------DSTRMALNLQWGVIPVLVNLSDD-------METNIAKTIDLI 538 (575)
Q Consensus 479 T~SG~TAr~VSr~RP~~PIiAvT-~~------------~~~aR~L~L~~GV~Pvl~~~~~d-------~d~~i~~al~~~ 538 (575)
|.||+||+++|||||.+||||+| |+ ++++|||+|+|||+|++++...+ .+.+++.+++++
T Consensus 416 T~sG~tAr~isk~RP~~pIla~t~~~~~~~~~~~~~~~~~~aR~L~L~~GV~P~~~~~~~~~e~~~~~~~~~~~~a~~~~ 495 (526)
T PLN02765 416 TSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFTGAFQARQCLIVRGLFPMLADPRHSAESTSATNESVLKVALDHG 495 (526)
T ss_pred CCCcHHHHHHHhhCCCCCEEEEecCcccccccccccCcHHHHHHhhcccCCEEEEeccccccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999 77 89999999999999999865444 678899999999
Q ss_pred HHcCCCCCCCEEEEEecCCCCCCCccccceEEEEEcC
Q 008172 539 KMKGMVKYGDAVLVVLDLTPAHVTSTAFQSIQVKTIV 575 (575)
Q Consensus 539 ~~~g~~k~GD~VVvv~G~~~~~g~t~~~~~i~v~~v~ 575 (575)
++.|++++||.||++++ .|+| |+++|.+++
T Consensus 496 ~~~g~~~~GD~vvv~~~----~g~t---n~i~v~~v~ 525 (526)
T PLN02765 496 KAAGVIKSHDRVVVCQK----VGDS---SVVKIIELD 525 (526)
T ss_pred HHcCCCCCCCEEEEEec----CCCC---ceEEEEEcC
Confidence 99999999999999984 4777 999999885
No 8
>PRK06354 pyruvate kinase; Provisional
Probab=100.00 E-value=9.3e-129 Score=1073.43 Aligned_cols=470 Identities=32% Similarity=0.527 Sum_probs=439.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCeEEEEecCC
Q 008172 87 GLRKTKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEKLFCISVMIDTEGSQIHVVDHGE 166 (575)
Q Consensus 87 ~~r~tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkIRtG~~~~ 166 (575)
.+|+|||||||||+|+++|+|++|+++|||+||||||||++|+|.++++++|++++++++|++||+||||||||+|.+.+
T Consensus 6 ~~r~tKIi~TiGPas~~~e~l~~li~aG~~v~RlN~sHg~~e~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~ 85 (590)
T PRK06354 6 LMRRTKIVATIGPASESPEKLRQLIEAGATTARLNFSHGDHEEHGARIKNIREASKKLGKTVGILQDLQGPKIRLGRFED 85 (590)
T ss_pred CCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCceeccccCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred CCceEEecCCEEEEEeeccCCCCCcEEEecccccccccCCCCEEEEeCCeeEEEEEEEE--CCeEEEEEecCeEecCCcc
Q 008172 167 PNSVKVEEDSIWLFTAIKFEGSRPFTVKANYAGFSEGIEVGDELVIDGGMASFEVIEKV--GNDLRCKCTDPGVFLPRAK 244 (575)
Q Consensus 167 ~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~--~~~i~~~V~~gG~l~s~K~ 244 (575)
.++.|++|+.++|+.++..+ +++.+++||++|++.+++||.||+|||+|.|+|.+++ ++.+.|+|.+||.|+++||
T Consensus 86 -~~i~l~~G~~~~l~~~~~~~-~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~~v~~~v~~~g~l~~~Kg 163 (590)
T PRK06354 86 -GPIELKTGDEFILTSREVLG-TQEKFSVTYDGLADEVPVGSRILLDDGLIELEVEEVDKADGELHCKVLVGGVLSNKKG 163 (590)
T ss_pred -CcEEecCCCEEEEEecccCC-CCCEEeechHHHHhhcCCCCEEEEeCCeEEEEEEEEEcCCCEEEEEEEeCeEECCCCc
Confidence 46999999999999875434 4578999999999999999999999999999999988 8999999999999999999
Q ss_pred cccccCcccccccccCCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHH
Q 008172 245 LSFRRNGILVERNHGLPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFE 324 (575)
Q Consensus 245 vn~~r~g~~~~~~~~lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nld 324 (575)
+|+ |++.+++|.|||||++||+||+++++|||++||||+++||+++|+++.+.++.++.||||||+++|++|+|
T Consensus 164 vn~------p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nld 237 (590)
T PRK06354 164 VNF------PGVSLSLPAITEKDREDLIFGLEQGVDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNID 237 (590)
T ss_pred ccc------cCCccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHH
Confidence 997 57889999999999999999999999999999999999999999999654347899999999999999999
Q ss_pred HHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEe
Q 008172 325 EIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALML 404 (575)
Q Consensus 325 eI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmL 404 (575)
||++++|||||||||||+|+|.+++|.+||+|+++|+++|||||+||||||||++||+|||||++||||||+||+||+||
T Consensus 238 eI~~~~DgImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavML 317 (590)
T PRK06354 238 AILELCDGLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVML 317 (590)
T ss_pred HHHHhcCEEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCCCCCHHHHHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcCCcEEEEEcCChhH
Q 008172 405 SGESAIGPFGQKAVSVLQMASSRMELWSREENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLGVDAIFVYTKHGHM 484 (575)
Q Consensus 405 s~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~AkaIVVfT~SG~T 484 (575)
|+|||+|+||+|||+||++|++++|++.++...+.. .... ..+..+++|.+|+++|.+++|++||+||+||+|
T Consensus 318 S~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~------~~~~-~~~~~~~ia~aa~~~a~~~~a~~Iv~~T~sG~t 390 (590)
T PRK06354 318 SNETAAGDYPVEAVQTMATIAVRIEKDLPYRDILSK------RPEF-TTTITNAISQAVSHIALQLDAAAIVTLTKSGAT 390 (590)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHhccchhhhhhh------cccc-CCCHHHHHHHHHHHHHhhcCCCEEEEECCChHH
Confidence 999999999999999999999999986443211111 0011 224578999999999999999999999999999
Q ss_pred HHHHhccCCCCcEEEEcCcHHHHHHhcccCCcEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCC-CCCc
Q 008172 485 ASLLSRNRPNPPIFAFTNDDSTRMALNLQWGVIPVLVNLSDDMETNIAKTIDLIKMKGMVKYGDAVLVVLDLTPA-HVTS 563 (575)
Q Consensus 485 Ar~VSr~RP~~PIiAvT~~~~~aR~L~L~~GV~Pvl~~~~~d~d~~i~~al~~~~~~g~~k~GD~VVvv~G~~~~-~g~t 563 (575)
|+++|||||.+||||+|++++++|||+|+|||+|++++...+.+++++.+++++++.|++++||.||+++|+|.+ .|.|
T Consensus 391 a~~vsk~Rp~~pI~a~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~gd~vv~~~g~~~~~~g~t 470 (590)
T PRK06354 391 ARNVSKYRPKTPILAVTPNESVARRLQLVWGVTPLLVLDAPSTDETFDAAINVAQESGLLKQGDLVVITAGTLVGESGST 470 (590)
T ss_pred HHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCcCCCc
Confidence 999999999999999999999999999999999999988888999999999999999999999999999999864 6777
Q ss_pred cccceEEEEEc
Q 008172 564 TAFQSIQVKTI 574 (575)
Q Consensus 564 ~~~~~i~v~~v 574 (575)
|++||++|
T Consensus 471 ---n~~~v~~v 478 (590)
T PRK06354 471 ---DLMKVHVV 478 (590)
T ss_pred ---eeEEEEEe
Confidence 99999987
No 9
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=100.00 E-value=3.2e-128 Score=1048.38 Aligned_cols=473 Identities=36% Similarity=0.565 Sum_probs=438.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCeEEEEecCCC
Q 008172 88 LRKTKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEKLFCISVMIDTEGSQIHVVDHGEP 167 (575)
Q Consensus 88 ~r~tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkIRtG~~~~~ 167 (575)
||+|||||||||+|+++|+|++|+++|||+||||||||++|+|.++++++|++++++|++++||+||||||||+|.++++
T Consensus 1 ~~~tkIi~TiGp~s~~~e~l~~li~aG~~v~RiN~sHg~~~~~~~~i~~vr~~~~~~~~~i~il~Dl~GpkiR~g~~~~~ 80 (480)
T cd00288 1 LRRTKIVCTIGPATDSVENLKKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAAEKTGGPVAIALDTKGPEIRTGLFKGG 80 (480)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCCceeecccCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CceEEecCCEEEEEeecc-CCCCCcEEEecccccccccCCCCEEEEeCCeeEEEEEEEECC-eEEEEEecCeEecCCccc
Q 008172 168 NSVKVEEDSIWLFTAIKF-EGSRPFTVKANYAGFSEGIEVGDELVIDGGMASFEVIEKVGN-DLRCKCTDPGVFLPRAKL 245 (575)
Q Consensus 168 ~~i~l~~G~~v~lt~~~~-~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~-~i~~~V~~gG~l~s~K~v 245 (575)
.++.|++|+.++|+.+.. ..++++.+++||++|++.+++||.||+|||+|.|+|.+++++ .++|+|.+||.|+++||+
T Consensus 81 ~~i~l~~G~~~~lt~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~i~~~v~~~G~l~~~kgi 160 (480)
T cd00288 81 KDISLKAGDKFLVTTDPAAKKGTKEKIYVDYKNLTKDVSPGNTILVDDGLLSLKVLSKDDDKTLVCEVLNGGVLGSRKGV 160 (480)
T ss_pred CceecCCCCEEEEEecccccCCCCcEEeechHHhHhhcCCCCEEEEeCCEEEEEEEEEcCCceEEEEEEeCeEEcCCCce
Confidence 479999999999988752 223457899999999999999999999999999999999999 999999999999999999
Q ss_pred ccccCcccccccccCCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHH
Q 008172 246 SFRRNGILVERNHGLPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEE 325 (575)
Q Consensus 246 n~~r~g~~~~~~~~lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nlde 325 (575)
|+ |+..+++|.|||||++||+||+++|+|||++|||++++|++++|+++...+ .++.+|||||+++|++||||
T Consensus 161 n~------p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~-~~~~iiakIEt~~av~nlde 233 (480)
T cd00288 161 NL------PGTDVDLPALSEKDKADLRFGVEQGVDMIFASFVRKASDVLEIREVLGEKG-KDIKIIAKIENQEGVNNFDE 233 (480)
T ss_pred Ee------eCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcC-CCceEEEEECCHHHHHhHHH
Confidence 97 477889999999999999999999999999999999999999999998876 78999999999999999999
Q ss_pred HHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 326 IVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 326 I~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
|++++|||||||||||+++|.++++.+|++|+++|+++|||+|+||||||||++||+|||||++||||||+||+||+|||
T Consensus 234 I~~~~DgImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS 313 (480)
T cd00288 234 ILEASDGIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLS 313 (480)
T ss_pred HHHhcCEEEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCCCCHHHHHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcCCcEEEEEcCChhHH
Q 008172 406 GESAIGPFGQKAVSVLQMASSRMELWSREENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLGVDAIFVYTKHGHMA 485 (575)
Q Consensus 406 ~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~AkaIVVfT~SG~TA 485 (575)
+|||+|+||+|||++|++|++++|+++.+...+... ... .....+..++++.+|+++|.++++++||+||.||+||
T Consensus 314 ~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~--~~~--~~~~~~~~~aia~sAv~~A~~l~akaIVv~T~SG~TA 389 (480)
T cd00288 314 GETAKGKYPVEAVKAMARICLEAEKALSHRVLFNEM--RRL--TPRPTSTTEAVAMSAVRAAFELGAKAIVVLTTSGRTA 389 (480)
T ss_pred chhcCCCCHHHHHHHHHHHHHHHHhccchhhhhhhh--hcc--cccCCChHHHHHHHHHHHHHhcCCCEEEEECCCcHHH
Confidence 999999999999999999999999864332212111 000 0111235789999999999999999999999999999
Q ss_pred HHHhccCCCCcEEEEcCcHHHHHHhcccCCcEEEEecCC-----CCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCC
Q 008172 486 SLLSRNRPNPPIFAFTNDDSTRMALNLQWGVIPVLVNLS-----DDMETNIAKTIDLIKMKGMVKYGDAVLVVLDLTPAH 560 (575)
Q Consensus 486 r~VSr~RP~~PIiAvT~~~~~aR~L~L~~GV~Pvl~~~~-----~d~d~~i~~al~~~~~~g~~k~GD~VVvv~G~~~~~ 560 (575)
+++|+|||.+||||+|++++++|+|+|+|||+|++++.. .+.+++++.+.+++++.|++++||.||+++|+|...
T Consensus 390 ~~lS~~RP~~pIiavT~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gd~vv~~~g~~~~~ 469 (480)
T cd00288 390 RLVSKYRPNAPIIAVTRNEQTARQLHLYRGVYPVLFEEPKPGWQEDTDARLKAAVNVAKEKGLLKKGDLVVVVQGWPVGS 469 (480)
T ss_pred HHHHhhCCCCCEEEEcCCHHHhhheeeccCcEEEEecccccccCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCC
Confidence 999999999999999999999999999999999998755 788999999999999999999999999999998766
Q ss_pred CCccccceEEEEEc
Q 008172 561 VTSTAFQSIQVKTI 574 (575)
Q Consensus 561 g~t~~~~~i~v~~v 574 (575)
|.| |+|||++|
T Consensus 470 ~~t---n~i~v~~~ 480 (480)
T cd00288 470 GST---NTMRILTV 480 (480)
T ss_pred CCC---eEEEEEEC
Confidence 777 99999875
No 10
>PRK05826 pyruvate kinase; Provisional
Probab=100.00 E-value=8.9e-127 Score=1033.57 Aligned_cols=458 Identities=37% Similarity=0.549 Sum_probs=430.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCeEEEEecCC
Q 008172 87 GLRKTKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEKLFCISVMIDTEGSQIHVVDHGE 166 (575)
Q Consensus 87 ~~r~tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkIRtG~~~~ 166 (575)
|+|+|||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|++++++|+|++|++||||||||+|.+.+
T Consensus 2 ~~~~tkIi~TiGp~s~~~e~l~~li~~G~~v~RiN~sHg~~~~~~~~i~~ir~~~~~~~~~i~I~~Dl~GpkiR~g~~~~ 81 (465)
T PRK05826 2 MLRRTKIVATLGPASDSPENLEKLIEAGVNVVRLNFSHGSHEEHGKRAALVREIAAKLGRPVAILLDLKGPKIRVGKFKE 81 (465)
T ss_pred CCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCceeeccccC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCceEEecCCEEEEEeeccCCCCCcEEEecccccccccCCCCEEEEeCCeeEEEEEEEECCeEEEEEecCeEecCCcccc
Q 008172 167 PNSVKVEEDSIWLFTAIKFEGSRPFTVKANYAGFSEGIEVGDELVIDGGMASFEVIEKVGNDLRCKCTDPGVFLPRAKLS 246 (575)
Q Consensus 167 ~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~i~~~V~~gG~l~s~K~vn 246 (575)
.++.|++|++++|+.+....++++.|++||++|++++++||+||+|||+|+|+|.+++++.++|+|.+||.|+++||+|
T Consensus 82 -~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~ilidDG~i~l~V~~~~~~~v~~~v~~~g~l~s~kgvn 160 (465)
T PRK05826 82 -GKITLKTGDKFTLDTDQKEEGDKERVGVDYKGLPKDVKPGDILLLDDGKLQLKVVEVDGDEVETEVKNGGPLSNNKGIN 160 (465)
T ss_pred -CcEEecCCCEEEEEeccccCCCCCEEEechHHhHhhcCCCCEEEEeCCeEEEEEEEEeCCEEEEEEEeCcEecCCceee
Confidence 4699999999999987433334678999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccccccCCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHH
Q 008172 247 FRRNGILVERNHGLPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEI 326 (575)
Q Consensus 247 ~~r~g~~~~~~~~lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI 326 (575)
+ |++.+++|.|||+|.++|+|++++|+|||++|||++++|++++++++...|..++.||+|||+++|++|||||
T Consensus 161 l------p~~~~~lp~lte~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI 234 (465)
T PRK05826 161 I------PGGGLSLPALTEKDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEI 234 (465)
T ss_pred c------cCcccCCCCCChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHH
Confidence 7 5788999999999999999999999999999999999999999999998873389999999999999999999
Q ss_pred HhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEecc
Q 008172 327 VEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSG 406 (575)
Q Consensus 327 ~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ 406 (575)
++++|||||||||||+++|.+++|.+||+|+++|+++|||+|+||||||||++||+|||||++||+|||+||+||+||||
T Consensus 235 ~~~~DgImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ 314 (465)
T PRK05826 235 IEASDGIMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSG 314 (465)
T ss_pred HHHcCEEEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcC-CcEEEEEcCChhHH
Q 008172 407 ESAIGPFGQKAVSVLQMASSRMELWSREENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLG-VDAIFVYTKHGHMA 485 (575)
Q Consensus 407 ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~-AkaIVVfT~SG~TA 485 (575)
|||+|+||+|||+||++|++++|+++.+...+.. +... ..+..+++|.+|+++|.+++ |++|||||.||+||
T Consensus 315 ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~------~~~~-~~~~~~~ia~aa~~~a~~l~~a~~Ivv~T~sG~ta 387 (465)
T PRK05826 315 ETAAGKYPVEAVEAMARICKGAEKEFSINLSKHR------LDRQ-FDRIDEAIAMSAMYAANHLKGVKAIVALTESGRTA 387 (465)
T ss_pred ccccCcCHHHHHHHHHHHHHHHHhccchhhhhhh------cccc-ccchHHHHHHHHHHHHHhcCCCCEEEEECCCcHHH
Confidence 9999999999999999999999986543211111 1001 13567999999999999999 99999999999999
Q ss_pred HHHhccCCCCcEEEEcCcHHHHHHhcccCCcEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCC
Q 008172 486 SLLSRNRPNPPIFAFTNDDSTRMALNLQWGVIPVLVNLSDDMETNIAKTIDLIKMKGMVKYGDAVLVVLDLTP 558 (575)
Q Consensus 486 r~VSr~RP~~PIiAvT~~~~~aR~L~L~~GV~Pvl~~~~~d~d~~i~~al~~~~~~g~~k~GD~VVvv~G~~~ 558 (575)
+++|||||.+||||+|++++++|||+|+|||+|++++...+.+++++.|++++++.|++++||.||+++|+|.
T Consensus 388 ~~isk~RP~~pI~~~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~~~~gd~vvvv~g~~~ 460 (465)
T PRK05826 388 RLISRFRPGAPIFAVTRDEKTQRRLALYRGVYPVLFDSAADTDDAAEEALRLLLEKGLVESGDLVVVTSGDPM 460 (465)
T ss_pred HHHHhhCCCCCEEEEcCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCC
Confidence 9999999999999999999999999999999999998778999999999999999999999999999999985
No 11
>PLN02623 pyruvate kinase
Probab=100.00 E-value=1.1e-123 Score=1019.69 Aligned_cols=470 Identities=42% Similarity=0.646 Sum_probs=436.6
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhc-CCceEEEEeCCCCeEEEEec
Q 008172 86 LGLRKTKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEK-LFCISVMIDTEGSQIHVVDH 164 (575)
Q Consensus 86 ~~~r~tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~-~~~i~Il~Dl~GpkIRtG~~ 164 (575)
+.+|||||||||||+|+++|+|++|+++||||||||||||++++|+++++++|+++++. +++++||+||||||||+|.+
T Consensus 107 ~~~rkTKIV~TiGPas~s~e~l~~li~aGmnv~RlNfSHg~~e~h~~~i~~vr~~~~~~~~~~iaIl~Dl~GPkIRig~~ 186 (581)
T PLN02623 107 SVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDL 186 (581)
T ss_pred CCCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCceecccC
Confidence 35789999999999999999999999999999999999999999999999999999986 59999999999999999999
Q ss_pred CCCCceEEecCCEEEEEeeccCCCCCcEEEecccccccccCCCCEEEEeCCeeEEEEEEEECCeEEEEEecCeEecCCcc
Q 008172 165 GEPNSVKVEEDSIWLFTAIKFEGSRPFTVKANYAGFSEGIEVGDELVIDGGMASFEVIEKVGNDLRCKCTDPGVFLPRAK 244 (575)
Q Consensus 165 ~~~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~i~~~V~~gG~l~s~K~ 244 (575)
.+ ++.|++|+.|+|+.+...+ +++.+++||++|++++++||.||+|||+|.|+|++++++.+.|+|.+||.|+++||
T Consensus 187 ~~--~i~l~~G~~v~lt~~~~~g-~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~V~~gG~L~s~Kg 263 (581)
T PLN02623 187 PQ--PIMLEEGQEFTFTIKRGVS-TEDCVSVNYDDFVNDVEVGDMLLVDGGMMSLAVKSKTSDSVKCEVVDGGELKSRRH 263 (581)
T ss_pred CC--CEEecCCCEEEEecCccCC-CCCEEeechHHHHhhCCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeceEecCCCC
Confidence 64 6999999999998875444 45789999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccccccccCCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHH
Q 008172 245 LSFRRNGILVERNHGLPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFE 324 (575)
Q Consensus 245 vn~~r~g~~~~~~~~lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nld 324 (575)
+|+ ||+.+++|.|||||++||+|++++|+|||++||||+++||+++++++...+ .++.||+|||+++|++|+|
T Consensus 264 vNl------pg~~~~lp~lTekD~~di~f~~~~~vD~ialSFVr~a~DV~~~r~~l~~~~-~~~~iiakIEt~eaVeNld 336 (581)
T PLN02623 264 LNV------RGKSATLPSITEKDWEDIKFGVENKVDFYAVSFVKDAQVVHELKDYLKSCN-ADIHVIVKIESADSIPNLH 336 (581)
T ss_pred CCC------CCCcCCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcC-CcceEEEEECCHHHHHhHH
Confidence 996 478899999999999999999999999999999999999999999998876 7899999999999999999
Q ss_pred HHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEe
Q 008172 325 EIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALML 404 (575)
Q Consensus 325 eI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmL 404 (575)
||++.+|||||||||||+++|+++++.+|++|+++|+++|||+|+||||||||+.+|.|||||++|++|++.+|+|++||
T Consensus 337 eIl~g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmL 416 (581)
T PLN02623 337 SIITASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVML 416 (581)
T ss_pred HHHHhCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCCCCCHHHHHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcCCcEEEEEcCChhH
Q 008172 405 SGESAIGPFGQKAVSVLQMASSRMELWSREENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLGVDAIFVYTKHGHM 484 (575)
Q Consensus 405 s~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~AkaIVVfT~SG~T 484 (575)
|+||+.|+||+|||++|++|+.++|++..+...+..+ .. ....+..+++|.+|+++|+.++++ ||+||+||+|
T Consensus 417 s~Eta~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~---~~---~~~~~~~~~ia~sA~~~A~~l~a~-Ivv~T~sG~t 489 (581)
T PLN02623 417 SGETAHGKFPLKAVKVMHTVALRTEATLPEGTTPPNL---GQ---AFKNHMSEMFAFHATMMANTLGTS-IIVFTRTGFM 489 (581)
T ss_pred cchhhcCcCHHHHHHHHHHHHHHHHhhcccchhhhhh---cc---ccCCChHHHHHHHHHHHHHhcCCc-EEEECCCcHH
Confidence 9999999999999999999999999864332111100 11 112245689999999999999999 9999999999
Q ss_pred HHHHhccCCCCcEEEEcCcHHHHHHhcccCCcEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecC--CCC-CC
Q 008172 485 ASLLSRNRPNPPIFAFTNDDSTRMALNLQWGVIPVLVNLSDDMETNIAKTIDLIKMKGMVKYGDAVLVVLDL--TPA-HV 561 (575)
Q Consensus 485 Ar~VSr~RP~~PIiAvT~~~~~aR~L~L~~GV~Pvl~~~~~d~d~~i~~al~~~~~~g~~k~GD~VVvv~G~--~~~-~g 561 (575)
|+++|||||.+||||+|++++++|||+|+|||+|+++++..+.+++++.+++++++.|++++||.||+++|+ |.+ .|
T Consensus 490 A~~lSr~RP~~pI~avT~~~~~aR~L~L~~GV~P~~~~~~~~~e~~i~~a~~~~~~~g~v~~GD~vviv~g~~~p~~~~g 569 (581)
T PLN02623 490 AILLSHYRPSGTIFAFTNEKRIQQRLALYQGVCPIYMQFSDDAEETFARALSLLLNKGMVKEGEEVALVQSGRQPIWRSE 569 (581)
T ss_pred HHHHHhhCCCCCEEEECCCHHHHHHhhcccccEEEecCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeccCCCCCCCC
Confidence 999999999999999999999999999999999999988889999999999999999999999999999874 433 56
Q ss_pred CccccceEEEEEcC
Q 008172 562 TSTAFQSIQVKTIV 575 (575)
Q Consensus 562 ~t~~~~~i~v~~v~ 575 (575)
.| |+|+|++|+
T Consensus 570 ~t---n~i~V~~v~ 580 (581)
T PLN02623 570 ST---HHIQVRKVQ 580 (581)
T ss_pred CC---eEEEEEEee
Confidence 66 999999874
No 12
>PTZ00300 pyruvate kinase; Provisional
Probab=100.00 E-value=1.6e-121 Score=987.19 Aligned_cols=445 Identities=31% Similarity=0.473 Sum_probs=410.8
Q ss_pred CcEEEeeCCCCCHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCeEEEEecCCCCceEEecCCEEEEEeecc--CCCCCcE
Q 008172 115 MNVARLNMCHNTREWHLDVIRKIKQLNHEKLFCISVMIDTEGSQIHVVDHGEPNSVKVEEDSIWLFTAIKF--EGSRPFT 192 (575)
Q Consensus 115 ~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkIRtG~~~~~~~i~l~~G~~v~lt~~~~--~~~~~~~ 192 (575)
|||||||||||++|+|+++++++|+++++.|++++||+||||||||||.+.+ .++.|++|+.++|+.++. ..++++.
T Consensus 1 ~~v~RlN~sHg~~e~h~~~i~~vr~~~~~~~~~i~il~Dl~GPkiR~g~~~~-~~~~l~~G~~~~l~~~~~~~~~~~~~~ 79 (454)
T PTZ00300 1 MSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGLFVG-GEAVMERGATCYVTTDPAFADKGTKDK 79 (454)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCCceeccccCC-CcEEecCCCEEEEEeccccccCCCCCE
Confidence 7999999999999999999999999999999999999999999999999975 369999999999987741 1224578
Q ss_pred EEecccccccccCCCCEEEEeCCeeEEEEEEEEC-CeEEEEEecCeEecCCcccccccCcccccccccCCCCCccCHHHH
Q 008172 193 VKANYAGFSEGIEVGDELVIDGGMASFEVIEKVG-NDLRCKCTDPGVFLPRAKLSFRRNGILVERNHGLPTLSKKDWDDI 271 (575)
Q Consensus 193 i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~-~~i~~~V~~gG~l~s~K~vn~~r~g~~~~~~~~lp~lsekD~~di 271 (575)
+++||++|++.+++||.||+|||+|.|+|.++.+ +.+.|+|.+||.|+++||+|+ ||..+++|++|++|.++|
T Consensus 80 i~v~~~~l~~~v~~G~~ilidDG~i~l~V~~~~~~~~v~~~v~~gG~l~~~kgvnl------p~~~~~l~~ltekD~~dI 153 (454)
T PTZ00300 80 FYIDYQNLSKVVRPGGYIYIDDGILILHVQSHEDEQTLKCTVTNAHTISDRRGVNL------PGCDVDLPAVSAKDCADL 153 (454)
T ss_pred EEecCcccccccCCCCEEEEeCCeEEEEEEEEcCCceEEEEEecCcEecCCCcccc------CCCccCCCCCChhhHHHH
Confidence 9999999999999999999999999999999886 689999999999999999997 578899999999999999
Q ss_pred HHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHH
Q 008172 272 EFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPT 351 (575)
Q Consensus 272 ~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~ 351 (575)
+|++++|+|||++|||++++|++++|++++..+ .++.||||||+++|++|||||++.+|||||||||||+|+|.|+||.
T Consensus 154 ~~ald~gvd~I~~SfVrsaeDv~~vr~~l~~~~-~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgvei~~e~vp~ 232 (454)
T PTZ00300 154 QFGVEQGVDMIFASFIRSAEQVGEVRKALGAKG-GDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVV 232 (454)
T ss_pred HHHHHCCCCEEEECCCCCHHHHHHHHHHHHhcC-CCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhhcChHHHHH
Confidence 999999999999999999999999999998776 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhh
Q 008172 352 VQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELW 431 (575)
Q Consensus 352 ~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~ 431 (575)
+||+|+++|+++|||||+||||||||++||+|||||++||||||+||+||+|||+|||+|+||+|||++|++|+++||++
T Consensus 233 ~Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~~I~~~aE~~ 312 (454)
T PTZ00300 233 AQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSA 312 (454)
T ss_pred HHHHHHHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred hhhhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcCCcEEEEEcCChhHHHHHhccCCCCcEEEEcCcHHHHHHhc
Q 008172 432 SREENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLGVDAIFVYTKHGHMASLLSRNRPNPPIFAFTNDDSTRMALN 511 (575)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~AkaIVVfT~SG~TAr~VSr~RP~~PIiAvT~~~~~aR~L~ 511 (575)
.++...+... ... ...+.+..+++|.+|+++|.+++|++||+||.||+||+++|||||.+||||+|++++++|||+
T Consensus 313 ~~~~~~~~~~---~~~-~~~~~~~~~~ia~sa~~~a~~l~a~aIiv~T~sG~tA~~vs~~RP~~pIia~t~~~~~ar~l~ 388 (454)
T PTZ00300 313 VNEYVFFNSI---KKL-QPIPMSAEEAVCSSAVNSVYETKAKALVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLN 388 (454)
T ss_pred hchhhhhhhh---hcc-ccCCCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhh
Confidence 4322222111 000 111224568999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEEEecC-----CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCccccceEEEEEc
Q 008172 512 LQWGVIPVLVNL-----SDDMETNIAKTIDLIKMKGMVKYGDAVLVVLDLTPAHVTSTAFQSIQVKTI 574 (575)
Q Consensus 512 L~~GV~Pvl~~~-----~~d~d~~i~~al~~~~~~g~~k~GD~VVvv~G~~~~~g~t~~~~~i~v~~v 574 (575)
|+|||+|++++. ..+.+++++.+++++++.|++++||.||+++|+|.+.|+| |++||++|
T Consensus 389 l~~GV~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~g~~~~gd~vvi~~g~~~~~g~t---n~i~v~~~ 453 (454)
T PTZ00300 389 ITQGVESVFFDAERLGHDEGKEQRVAMGVGFAKSKGYVQSGDLMVVVHADHKVKGYA---NQTRIILV 453 (454)
T ss_pred cccCcEEEEeccccccccCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCC---CEEEEEEe
Confidence 999999999864 4578899999999999999999999999999999888888 99999987
No 13
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=100.00 E-value=3.4e-118 Score=972.96 Aligned_cols=469 Identities=37% Similarity=0.581 Sum_probs=432.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCeEEEEecCCCC
Q 008172 89 RKTKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEKLFCISVMIDTEGSQIHVVDHGEPN 168 (575)
Q Consensus 89 r~tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkIRtG~~~~~~ 168 (575)
|+||||||+||+|+++|+|++|+++|||+||||||||++++|+++++++|++++++|++++||+||||||||+|.+.+ .
T Consensus 1 ~~tkii~Tigp~~~~~e~l~~l~~~G~~~~R~N~shg~~~~~~~~i~~ir~~~~~~~~~~~i~~Dl~GpkiR~g~~~~-~ 79 (473)
T TIGR01064 1 RRTKIVCTIGPATNSPEMLKKLLDAGMNVARLNFSHGSHEEHGKRIENVREAAEKLGRPVAILLDTKGPEIRTGEIKG-G 79 (473)
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCceeccccCC-C
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999965 4
Q ss_pred ceEEecCCEEEEEeec-cCCCCCcEEEecccccccccCCCCEEEEeCCeeEEEEEEEECCeEEEEEecCeEecCCccccc
Q 008172 169 SVKVEEDSIWLFTAIK-FEGSRPFTVKANYAGFSEGIEVGDELVIDGGMASFEVIEKVGNDLRCKCTDPGVFLPRAKLSF 247 (575)
Q Consensus 169 ~i~l~~G~~v~lt~~~-~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~i~~~V~~gG~l~s~K~vn~ 247 (575)
++.|++|+.|+|+.+. ...++++.|++||++|++.+++||.||+|||+|.|+|++++++.++|+|.+||.|+++||+|+
T Consensus 80 ~~~l~~g~~v~l~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~i~iddG~i~l~V~~~~~~~~~~~v~~~g~l~~~kgvn~ 159 (473)
T TIGR01064 80 PVKLKKGDKVIITTDDIKGEGDEEDVSVDYKGLTKDVSEGDKILVDDGKISLVVVSVEGDKVICEVLNGGTLKSKKGVNL 159 (473)
T ss_pred ceecCCCCEEEEecccccCCCCCCEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeCcEEcCCceeec
Confidence 6999999999998774 222345789999999999999999999999999999999999999999999999999999997
Q ss_pred ccCcccccccccCCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHH
Q 008172 248 RRNGILVERNHGLPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIV 327 (575)
Q Consensus 248 ~r~g~~~~~~~~lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~ 327 (575)
||+.+++|.|||||.+||.++++.|+|+|++|||++++|++.+++++...+..++.||+||||++|++|++||+
T Consensus 160 ------p~~~~~~~~ltekD~~Dl~~~~~~~~d~I~lskV~sa~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~ 233 (473)
T TIGR01064 160 ------PGADVDLPALSEKDKKDLKFGVEQGVDMVAASFVRTAEDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIA 233 (473)
T ss_pred ------CCCccCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHH
Confidence 47889999999999999999999999999999999999999999999876534789999999999999999999
Q ss_pred hcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccC
Q 008172 328 EASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGE 407 (575)
Q Consensus 328 ~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~E 407 (575)
+++||+|+|||||++++|.++++.+|++|+.+|+++|||+|+||||||||+.||+|||||++|++|++++|+|++|||+|
T Consensus 234 ~~~dgi~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~e 313 (473)
T TIGR01064 234 EASDGIMVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGE 313 (473)
T ss_pred hhCCcEEEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcCCcEEEEEcCChhHHHH
Q 008172 408 SAIGPFGQKAVSVLQMASSRMELWSREENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLGVDAIFVYTKHGHMASL 487 (575)
Q Consensus 408 Ta~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~AkaIVVfT~SG~TAr~ 487 (575)
|+.|+||+|||+||++|++++|++..+...+... ........+..+++|.+|+++|..++|++||+||.||+||++
T Consensus 314 ta~G~yP~~~v~~m~~I~~~~E~~~~~~~~~~~~----~~~~~~~~~~~~~ia~~a~~~a~~~~akaIVv~T~SG~TA~~ 389 (473)
T TIGR01064 314 TAKGKYPVEAVKMMAKIAKEAEKALAYLTNFNDR----KNSDPKPSTITEAIALSAVEAAEKLDAKAIVVLTESGRTARL 389 (473)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHhccchhhhhhhh----hcccccCCChHHHHHHHHHHHHhhcCCCEEEEEcCChHHHHH
Confidence 9999999999999999999999864322112111 000111234679999999999999999999999999999999
Q ss_pred HhccCCCCcEEEEcCcHHHHHHhcccCCcEEEEecC-CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecC-CCC-CCCcc
Q 008172 488 LSRNRPNPPIFAFTNDDSTRMALNLQWGVIPVLVNL-SDDMETNIAKTIDLIKMKGMVKYGDAVLVVLDL-TPA-HVTST 564 (575)
Q Consensus 488 VSr~RP~~PIiAvT~~~~~aR~L~L~~GV~Pvl~~~-~~d~d~~i~~al~~~~~~g~~k~GD~VVvv~G~-~~~-~g~t~ 564 (575)
+|||||.+||||+|++++++|+|+|+|||+|++++. ..+.+++++.+++++++.|++++||.||+++|+ |.+ .|.|
T Consensus 390 vSr~rp~~PIiAvT~~~~v~R~L~L~wGV~Pil~~~~~~~~~~~i~~a~~~l~~~gl~~~GD~VVvv~g~~~~~~~~~~- 468 (473)
T TIGR01064 390 LSKYRPNAPIIAVTPNERVARQLALYWGVFPFLVDEEPSDTEARVNKALELLKEKGILKKGDLVVVIQGGAPIGGVGGT- 468 (473)
T ss_pred HHhhCCCCCEEEEcCCHHHHHHhhccCCcEEEEeCCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCC-
Confidence 999999999999999999999999999999999976 568899999999999999999999999999996 543 6767
Q ss_pred ccceEEE
Q 008172 565 AFQSIQV 571 (575)
Q Consensus 565 ~~~~i~v 571 (575)
|+|+|
T Consensus 469 --n~i~v 473 (473)
T TIGR01064 469 --NTIRV 473 (473)
T ss_pred --eEEeC
Confidence 98875
No 14
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.9e-119 Score=959.54 Aligned_cols=488 Identities=35% Similarity=0.501 Sum_probs=451.4
Q ss_pred cccccccccccchhhhhhcccCCCCCceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhc
Q 008172 65 KHGLSLGFDAVSEGELREKGFLGLRKTKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEK 144 (575)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~r~tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~ 144 (575)
+|.|.|+..+.+ ....|+|||+||+||++++.|+|++|+++|||++|||||||++++|+++++++|++.+..
T Consensus 5 ~~~~~L~~~~~~--------~~~~~~t~ivctigP~s~s~e~l~~m~~aGmniarlNfShGs~~~h~~tidn~~~a~~~~ 76 (501)
T KOG2323|consen 5 KHECLLSGSNGA--------PKKRRKTKIVCTIGPASRSVEMLRKLLKAGMNIARLNFSHGSHEYHQETIDNLRDAISNT 76 (501)
T ss_pred hhhhhhcccccc--------cccccceeeEeccCCccchHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHHHHHhhc
Confidence 566666663321 144689999999999999999999999999999999999999999999999999998887
Q ss_pred CC-ceEEEEeCCCCeEEEEecCCCCceEEecCCEEEEEeeccCCC-CCcEEEecccccccccCCCCEEEEeCCeeEEEEE
Q 008172 145 LF-CISVMIDTEGSQIHVVDHGEPNSVKVEEDSIWLFTAIKFEGS-RPFTVKANYAGFSEGIEVGDELVIDGGMASFEVI 222 (575)
Q Consensus 145 ~~-~i~Il~Dl~GpkIRtG~~~~~~~i~l~~G~~v~lt~~~~~~~-~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~ 222 (575)
+. |++|++|++||+||||.++++.+++|++|+.++|+++..... .++.+++||+++.++|++||.||+|||.+.|.|.
T Consensus 77 ~~~~~ai~LDtkGpEirtg~~~~~~~i~L~~G~~i~~t~d~~~~~~~~~~~~vdyk~~~~~V~~G~~i~vddgi~s~~V~ 156 (501)
T KOG2323|consen 77 GALPCAIMLDTKGPEIRTGDLKNGKPIKLKEGQEITITTDYSYEAKLSETISVDYKKLAKDVKPGDIIYVDDGLISLIVK 156 (501)
T ss_pred CCcchhhhhccCCCeEeecccCCCCceeecCCCEEEEEcChhhccccceEEEeehHHhhhccccCCEEEECCceeeeEEE
Confidence 65 499999999999999999887789999999999999864332 3578999999999999999999999999999999
Q ss_pred EEECCeEEEEEecCeEecCCcc-cccccCcccccccccCCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHh
Q 008172 223 EKVGNDLRCKCTDPGVFLPRAK-LSFRRNGILVERNHGLPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVS 301 (575)
Q Consensus 223 ~~~~~~i~~~V~~gG~l~s~K~-vn~~r~g~~~~~~~~lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~ 301 (575)
++..+.+.|+|+|+|.++|+|+ +|+ ||+..+||.|||||.+|++||+++++|+|++||||.++|+.++|++|+
T Consensus 157 ~~~~~~~~c~v~n~g~l~s~k~~vnl------pg~~vdlp~ltekd~~dl~fGven~vd~i~~SfIR~a~dv~~iR~~Lg 230 (501)
T KOG2323|consen 157 SVSKDEVTCRVENGGMLGSRKGNVNL------PGTHVDLPALTEKDEKDLKFGVENKVDMIFASFIRKASDVREVRKVLG 230 (501)
T ss_pred EeecCceEEEEecCcccccccCcccC------CCccccCCccChhhHHHHhcCCCCCCCEEEeeeeeehHHHHHHHHHhC
Confidence 9988999999999999999999 996 578899999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCC
Q 008172 302 GKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYP 381 (575)
Q Consensus 302 ~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p 381 (575)
+.+ ++++||+|||+++|+.|+|||+.++||+||||||||+|+|+|++|.+||.||.+|+.+|||||+||||||||+.+|
T Consensus 231 ~~g-~~ikiisKIEn~~g~~nfDeIl~~sDg~MvarGdlGieip~e~vflaQK~~I~kcn~~gKPVI~atqmleSm~~kp 309 (501)
T KOG2323|consen 231 ESG-KNIKLISKIENQEGVSNFDEILIESDGIMVARGDLGIEIPAEKVFLAQKMMIYKCNSAGKPVICATQMLESMIVKP 309 (501)
T ss_pred ccC-CcceEEEEechhhhhccHHHHHHhcCceEEEeCCCCcccCHHHHHHHHHHHHHHhcccCCCEEEehhhHHhhccCC
Confidence 886 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCCCCCchhhHHHH
Q 008172 382 TPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSREENRQSALCGQRQLGESLHDRIAEQICN 461 (575)
Q Consensus 382 ~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~ 461 (575)
+|||||++||+|||+||+||+|||||||.|+||++||++|+.||.+||...++...+..+ .. -.+.+.+..+++|.
T Consensus 310 rPtRaE~SDVanAVLdg~D~vmLsgEta~G~yP~~av~~m~~i~~~aE~~~~~~~~~~~l---~~-~v~~~~~~ie~~a~ 385 (501)
T KOG2323|consen 310 RPTRAEASDVANAVLDGADCVMLSGETAKGKYPVEAVKTMARICKEAEAVIYYDSLFSEL---GT-AVSFPMSTIESLAA 385 (501)
T ss_pred CCCccchHHHHHHHhccCceEEeccchhcCcCcHHHHHHHHHHHHhHHhhHHHHHHHHHH---Hh-hcCCCCchhHHHHH
Confidence 999999999999999999999999999999999999999999999999876655444333 11 12345567899999
Q ss_pred HHHHHHHhcCCcEEEEEcCChhHHHHHhccCCCCcEEEEcCcHHHHHHhcccCCcEEEEec------CCCCHHHHHHHHH
Q 008172 462 CAVDMANNLGVDAIFVYTKHGHMASLLSRNRPNPPIFAFTNDDSTRMALNLQWGVIPVLVN------LSDDMETNIAKTI 535 (575)
Q Consensus 462 ~av~~a~~~~AkaIVVfT~SG~TAr~VSr~RP~~PIiAvT~~~~~aR~L~L~~GV~Pvl~~------~~~d~d~~i~~al 535 (575)
+|+.+|.+..+.+|+|+|+||++|+++|+|||.+|||++|..++.|||++|||||+|++++ |.++.|+.++.|+
T Consensus 386 ~Av~~a~~~~a~aIvv~T~sg~~a~lvskyrP~~PIi~vt~~~~~aR~~~l~Rgv~Pvl~~~~~~~~~~~~~e~~i~~g~ 465 (501)
T KOG2323|consen 386 SAVRAATKCLASAIVVLTKSGYTAILVSKYRPSVPIISVTRPVLAARQSHLYRGIIPVLYARSPVEDWSEDVESRIKFGL 465 (501)
T ss_pred HHHHHHHhhcceEEEEEecCcccHHHHhccCCCCCEEEEeccHHHHHHHHhhccceeeeecccchhhhhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999964 7789999999999
Q ss_pred HHHHHcCCCCCCCEEEEEecCCCCCCCccccceEEEEEc
Q 008172 536 DLIKMKGMVKYGDAVLVVLDLTPAHVTSTAFQSIQVKTI 574 (575)
Q Consensus 536 ~~~~~~g~~k~GD~VVvv~G~~~~~g~t~~~~~i~v~~v 574 (575)
+.+++.|+++.||.+|++.+|..+.|++ |+|++.++
T Consensus 466 ~~~k~~g~~k~gd~~vvv~~~~~~~~~~---~~i~v~~~ 501 (501)
T KOG2323|consen 466 DFGKKKGILKKGDVVVVVNKGKGGASVT---NTIRVEKV 501 (501)
T ss_pred HHHHhcchhhcCCEEEEEecccCCccce---eeEEEeeC
Confidence 9999999999999999999999999999 99999864
No 15
>PRK06739 pyruvate kinase; Validated
Probab=100.00 E-value=9.8e-105 Score=833.14 Aligned_cols=333 Identities=33% Similarity=0.566 Sum_probs=319.2
Q ss_pred CceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCeEEEEecCCCCc
Q 008172 90 KTKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEKLFCISVMIDTEGSQIHVVDHGEPNS 169 (575)
Q Consensus 90 ~tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkIRtG~~~~~~~ 169 (575)
+++|||||||+|+++|+|++|+++|||+||||||||++|+|.++++++|++++ +++||+||||||||+|.+.+ .+
T Consensus 2 ~~~~V~TiGPas~~~e~l~~Li~aGm~v~RlNfSHGs~e~h~~~i~~vR~~~~----~vaIl~Dl~GPkIR~G~~~~-~~ 76 (352)
T PRK06739 2 TIDRICTIGPASNNKETLAQLINNGMKIVRLNLSHGTHESHKDIIRLVKSLDD----SIKILGDVQGPKIRLGEIKG-EQ 76 (352)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHhhh----hcceeecCCCCcceecccCC-Cc
Confidence 68999999999999999999999999999999999999999999999999875 48999999999999999975 46
Q ss_pred eEEecCCEEEEEeeccCCCCCcEEEecccccccccCCCCEEEEeCCeeEEEEEEEECCeEEEEEecCeEecCCccccccc
Q 008172 170 VKVEEDSIWLFTAIKFEGSRPFTVKANYAGFSEGIEVGDELVIDGGMASFEVIEKVGNDLRCKCTDPGVFLPRAKLSFRR 249 (575)
Q Consensus 170 i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~i~~~V~~gG~l~s~K~vn~~r 249 (575)
+.|++|+.++|+.++..+ +++.+++||++|++.+++||.||+|||+|.|+|.++.++.+.|+|.+||.|+++||||+
T Consensus 77 i~l~~G~~v~lt~~~~~g-~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~~~~v~~~v~~gG~L~s~Kgvn~-- 153 (352)
T PRK06739 77 ITLQAGDSFILHTQPVTG-SSTEASVDYEGIANDVKVGSRILMNDGEVELIVEKVSTDKIETKVKTGGNISSHKGVNL-- 153 (352)
T ss_pred EEecCCCEEEEecCccCC-CCCEEecchHHHHhhcCCCCEEEEeCCEEEEEEEEEeCCEEEEEEeeCcEEcCCCCeec--
Confidence 999999999998875444 45789999999999999999999999999999999999999999999999999999997
Q ss_pred CcccccccccCCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc
Q 008172 250 NGILVERNHGLPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA 329 (575)
Q Consensus 250 ~g~~~~~~~~lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~ 329 (575)
|++.+++|.|||||++||+||+++|+|||++||||+++||+++|+++.+.|..+++||||||+++|++||++|+++
T Consensus 154 ----pg~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~~ 229 (352)
T PRK06739 154 ----PGAIVRLPAITEKDKKDIQFLLEEDVDFIACSFVRKPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKE 229 (352)
T ss_pred ----ccccCCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999999999999999999998865689999999999999999999999
Q ss_pred CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcC
Q 008172 330 SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESA 409 (575)
Q Consensus 330 sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa 409 (575)
+|||||||||||+|+|+|+||.+||+||+.|+++|||||+||||||||++||+|||||++||||||+||+||+|||+|||
T Consensus 230 sDgimVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA 309 (352)
T PRK06739 230 ADGIMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESA 309 (352)
T ss_pred cCEEEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhhh
Q 008172 410 IGPFGQKAVSVLQMASSRMELWSRE 434 (575)
Q Consensus 410 ~G~yPveaV~~m~~I~~~aE~~~~~ 434 (575)
+|+||++||+||++|++++|++++.
T Consensus 310 ~G~yPveaV~~m~~I~~~aE~~~~~ 334 (352)
T PRK06739 310 SGEHPIESVSTLRLVSEFAEHVKKD 334 (352)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999987643
No 16
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=100.00 E-value=7.2e-105 Score=840.01 Aligned_cols=341 Identities=40% Similarity=0.644 Sum_probs=307.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCeEEEEecCCC
Q 008172 88 LRKTKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEKLFCISVMIDTEGSQIHVVDHGEP 167 (575)
Q Consensus 88 ~r~tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkIRtG~~~~~ 167 (575)
||+|||||||||+|+++|+|++|+++|||+||||||||++|+|+++++++|+++++++.+++|++||+|||||||.+.++
T Consensus 1 mRkTKIi~TiGPas~~~e~l~~li~aGm~v~RiN~SHg~~e~~~~~i~~iR~a~~~~~~~i~IllDl~GPkIRtg~l~~g 80 (348)
T PF00224_consen 1 MRKTKIIATIGPASESVEVLRKLIEAGMNVARINFSHGTHEEHKEIIENIREAEKELGKPIAILLDLKGPKIRTGRLKDG 80 (348)
T ss_dssp -SSSEEEEEESTTTCSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHHTTTS-EEEEEE-TS-EBB-BBTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccEEEEEeeecCCHHHHHHHHHHHHHHHhccCCceEEEeccCCCcceeeeeccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999763
Q ss_pred -CceEEecCCEEEEEeeccCC--CCCcEEEecccccccccCCCCEEEEeCCeeEEEEEEEECCe-EEEEEecCeEecCCc
Q 008172 168 -NSVKVEEDSIWLFTAIKFEG--SRPFTVKANYAGFSEGIEVGDELVIDGGMASFEVIEKVGND-LRCKCTDPGVFLPRA 243 (575)
Q Consensus 168 -~~i~l~~G~~v~lt~~~~~~--~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~-i~~~V~~gG~l~s~K 243 (575)
.++.|++|++|+|+.+.... ++++.|++||++|+++|++||+||+|||+|+|+|.++.++. +.|+|.+||.|+++|
T Consensus 81 ~~~i~L~~G~~v~lt~d~~~~~~g~~~~I~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~~~~~i~~~v~~~G~L~~~K 160 (348)
T PF00224_consen 81 KKEIELKKGDTVTLTTDDSYEESGDSNRIPVNYPELFEDVKPGDKILIDDGKIELEVTEVDGDSSIKCEVLNGGKLKSRK 160 (348)
T ss_dssp SSSEEE-TTSEEEEESSCTGTTCBBSSEEEBSSTTHHHHS-TTEEEEETTTTEEEEEEEEESTEEEEEEESS-EEEESSE
T ss_pred cccccccCCCEEEEEeccccccccCcccccCCchhhhhhcCCCCEEEEcCCCcEEEEEEEcCCcceeEEeCCCCCccCCc
Confidence 47999999999999876432 24579999999999999999999999999999999999999 999999999999999
Q ss_pred ccccccCcccccccccCCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcH
Q 008172 244 KLSFRRNGILVERNHGLPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKF 323 (575)
Q Consensus 244 ~vn~~r~g~~~~~~~~lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nl 323 (575)
|||+ |++++++|.|||+|++||+||+++|+|||++|||++++||.++|++|.+.| ++++||||||+++|++||
T Consensus 161 gVnl------p~~~~~lp~LtekD~~di~fa~~~~vD~IalSFVrsa~dV~~lr~~l~~~~-~~~~iiaKIE~~~~v~nl 233 (348)
T PF00224_consen 161 GVNL------PGVDLDLPALTEKDKEDIKFAVENGVDFIALSFVRSAEDVKELRKILGEKG-KDIKIIAKIETKEAVENL 233 (348)
T ss_dssp BEEE------TTS---S-SS-HHHHHHHHHHHHTT-SEEEETTE-SHHHHHHHHHHHTCTT-TTSEEEEEE-SHHHHHTH
T ss_pred ccee------cccccccccCCHHHHHHHHHHHHcCCCEEEecCCCchHHHHHHHHHhhhcC-cccceeeccccHHHHhhH
Confidence 9997 478899999999999999999999999999999999999999999999887 789999999999999999
Q ss_pred HHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEE
Q 008172 324 EEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALM 403 (575)
Q Consensus 324 deI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vm 403 (575)
|||+++||||||||||||+|+|++++|.+||+|+++|+++|||||+||||||||+++|.|||||++||||||+||+||+|
T Consensus 234 ~eI~~~sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vm 313 (348)
T PF00224_consen 234 DEILEASDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVM 313 (348)
T ss_dssp HHHHHHSSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEE
T ss_pred HHHhhhcCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCcCCCCCHHHHHHHHHHHHHHHhhhhhhh
Q 008172 404 LSGESAIGPFGQKAVSVLQMASSRMELWSREE 435 (575)
Q Consensus 404 Ls~ETa~G~yPveaV~~m~~I~~~aE~~~~~~ 435 (575)
||+|||+|+||+|||++|++|+++||+.+.+.
T Consensus 314 Ls~ETa~G~~p~~~v~~~~~i~~~~E~~~~~~ 345 (348)
T PF00224_consen 314 LSGETAIGKYPVEAVKTMARIIREAEKYLDYR 345 (348)
T ss_dssp ESHHHHTSSSHHHHHHHHHHHHHHHHHTS-HH
T ss_pred ecCCcCCCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999976554
No 17
>PRK14725 pyruvate kinase; Provisional
Probab=100.00 E-value=4.2e-92 Score=770.57 Aligned_cols=334 Identities=25% Similarity=0.378 Sum_probs=316.7
Q ss_pred CCCCCceEEEecC-CCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCeEEEEec
Q 008172 86 LGLRKTKMVCTIG-PACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEKLFCISVMIDTEGSQIHVVDH 164 (575)
Q Consensus 86 ~~~r~tkIi~TiG-Pas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkIRtG~~ 164 (575)
..+|+|||||||| |++.+++.|++|+++||||||||||||++++|+++|+++|+++++.|++++|++||+|||||||.+
T Consensus 136 ~~~R~tkImvTlg~~Aa~d~e~i~~Li~aGmdvaRINcAHg~~e~w~~mi~~vR~a~~~~gr~~~I~mDL~GPKiRtG~l 215 (608)
T PRK14725 136 PSGRPTRIMVTLPTEAADDPDLVRRLLAAGMDIARINCAHDDPEAWRAMIANVRTAEEELGRRCRIAMDLAGPKLRTGPI 215 (608)
T ss_pred CCCCCceEEEeCCCcccCCHHHHHHHHHcCCCEeeeECCCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcceEEec
Confidence 4578999999999 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC----------------------------------------------------------------------------
Q 008172 165 GEPN---------------------------------------------------------------------------- 168 (575)
Q Consensus 165 ~~~~---------------------------------------------------------------------------- 168 (575)
.++.
T Consensus 216 ~~g~~v~~~~p~rd~~G~v~~pa~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~l~~Gd~i~~~DaRg~~R~l~V~~~~~~ 295 (608)
T PRK14725 216 APGPRVIKLRPTRDALGRVLTPARLWLTASESPPPSPPPGPVGLPVDPEWLARLEPGDELRFTDARGKKRKLTVTEVDDE 295 (608)
T ss_pred CCCccccccccccccccccccchhheeecccCCCCCCCccccccccChhhhhhcCCCceeeeeeccccceeeeEEeecCc
Confidence 6532
Q ss_pred ------------------------------------ceEEecCCEEEEEeeccCCC----CCc--EEEecccccccccCC
Q 008172 169 ------------------------------------SVKVEEDSIWLFTAIKFEGS----RPF--TVKANYAGFSEGIEV 206 (575)
Q Consensus 169 ------------------------------------~i~l~~G~~v~lt~~~~~~~----~~~--~i~v~~~~l~~~v~~ 206 (575)
.+.|+.|+.++|+.+...+. ... .|+++|+++++.+++
T Consensus 296 ~~~~~~~~~~Y~~~G~~l~~~~~~~~~v~~~p~~~~~i~L~~Gd~l~lt~~~~~~~~~~~~~~~~~i~~t~p~l~~~v~~ 375 (608)
T PRK14725 296 GVLAEGSQTAYLANGTLLRLGRHDSTRVGGLPPVEQKLRLKVGDRLVLTRDDAPGDPAQGDAPPARISCTLPEAFRAARV 375 (608)
T ss_pred eeEEeecceeeeccCceeeeccccccccccccccCcceEecCCCEEEEecCCcCCccccCCCCccEEEechHHHHHhcCC
Confidence 58999999999987753331 223 899999999999999
Q ss_pred CCEEEEeCCeeEEEEEEEECCeEEEEEec----CeEecCCcccccccCcccccccccCCCCCccCHHHHHHHHHcCCCEE
Q 008172 207 GDELVIDGGMASFEVIEKVGNDLRCKCTD----PGVFLPRAKLSFRRNGILVERNHGLPTLSKKDWDDIEFGIAEGVDFI 282 (575)
Q Consensus 207 Gd~IliDDG~i~l~V~~~~~~~i~~~V~~----gG~l~s~K~vn~~r~g~~~~~~~~lp~lsekD~~di~~al~~gvd~I 282 (575)
||.|++|||+|.|+|++++++.+.|+|.+ ||.|+++||+|| |++.+++|.|||||++||+|++++ +|||
T Consensus 376 G~~VlidDG~I~l~V~~~~~~~v~~~V~~a~~~gg~L~s~KGiNl------P~~~l~lp~LTekD~~dl~f~~~~-vD~V 448 (608)
T PRK14725 376 GERVWFDDGKIGAVVVKVEADEVELRITHARPGGSKLKAGKGINL------PDSHLPLPALTDKDLEDLAFVAKH-ADIV 448 (608)
T ss_pred CCEEEEeCCeEEEEEEEEECCEEEEEEEEecCCCCEecCCCceec------CCCCCCCCCCCHHHHHHHHHHHHh-CCEE
Confidence 99999999999999999999999999999 999999999997 578899999999999999999999 9999
Q ss_pred EecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcC-----CEEEEeCCCCCCCCCCCChHHHHHHHH
Q 008172 283 AMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEAS-----DGIMVARGDLGVDIPLEQIPTVQEIII 357 (575)
Q Consensus 283 ~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~s-----DgImIaRGDLg~e~~~e~v~~~Qk~Ii 357 (575)
++|||++++||+++|+++.+.|.+++.|||||||++|++||+||+.++ |||||||||||+|+|++++|.+||+||
T Consensus 449 alSFVrs~~DV~~lr~~L~~~g~~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIARGDLgvEi~~e~lp~iQk~Ii 528 (608)
T PRK14725 449 ALSFVRSPEDVRLLLDALEKLGADDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGDLAVEVGFERLAEVQEEIL 528 (608)
T ss_pred EECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEECCccccccCHHHHHHHHHHHH
Confidence 999999999999999999988766899999999999999999999997 999999999999999999999999999
Q ss_pred HHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhh
Q 008172 358 HVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWS 432 (575)
Q Consensus 358 ~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~ 432 (575)
+.|+++|||||+||||||||++||+|||||++|||||+ |+|||||| .|+||+|||++|++|++++|.+.
T Consensus 529 ~~c~~~~kPVI~ATQmLESM~~~p~PTRAEvtDVAnAv--gaD~VMLS----~G~yPveAV~~l~~I~~r~e~~~ 597 (608)
T PRK14725 529 WLCEAAHVPVIWATQVLESLAKKGLPSRAEITDAAMAL--RAECVMLN----KGPHIVEAVRVLDDILRRMEEHQ 597 (608)
T ss_pred HHHHHcCCCEEEEcchHhhhccCCCCCchhHHHHHhhh--cCCEEeec----CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999 99999999 99999999999999999999754
No 18
>PRK08187 pyruvate kinase; Validated
Probab=100.00 E-value=1.3e-89 Score=746.08 Aligned_cols=333 Identities=26% Similarity=0.386 Sum_probs=314.6
Q ss_pred CCCCCceEEEecC-CCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCeEEEEec
Q 008172 86 LGLRKTKMVCTIG-PACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEKLFCISVMIDTEGSQIHVVDH 164 (575)
Q Consensus 86 ~~~r~tkIi~TiG-Pas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkIRtG~~ 164 (575)
..+|+|||||||| |+++++|+|++|+++||||||||||||++++|+++|+++|+++++.|++++|++||+|||||||.+
T Consensus 130 ~~~r~tkIv~Tlg~pa~~~~e~i~~Li~aGmdvaRiN~SHg~~e~~~~~i~~vR~a~~~~g~~i~Il~DL~GPKIRtG~l 209 (493)
T PRK08187 130 PAARRTRIMVTLPSEAADDPDFVLRLAERGMDCARINCAHDDPAAWQAMIGHLRQAERATGRRCKILMDLAGPKIRTGAV 209 (493)
T ss_pred cCCCCceEEEECCCCccCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCCCceeeccc
Confidence 4578999999995 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CceEEecCCEEEEEeeccCC---CCCcEEEecccccccccCCCCEEEEeCCeeEEEEEEEECCeEEEEEe----cC
Q 008172 165 GEP-NSVKVEEDSIWLFTAIKFEG---SRPFTVKANYAGFSEGIEVGDELVIDGGMASFEVIEKVGNDLRCKCT----DP 236 (575)
Q Consensus 165 ~~~-~~i~l~~G~~v~lt~~~~~~---~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~i~~~V~----~g 236 (575)
.++ .++.|++|+.|+|+.+...+ ..+..|+++|++|++.+++||.|++|||+|.|+|+++.++.+.|+|. +|
T Consensus 210 ~~~~~~~~l~~Gd~i~l~~~~~~~~~~~~~~~i~~~~~~l~~~v~~Gd~IlidDG~I~l~V~~v~~~~v~~~V~~~~~~g 289 (493)
T PRK08187 210 AGPLGKTRLYTGDRLALVAQGPPRRIDEEHFQVTCTLPEILARLAVGARVWIDDGKLGARVERVGPGGALLEVTHARPKG 289 (493)
T ss_pred CCCCccEEecCCCEEEEeccccccCCCCCccEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEeCCEEEEEEEEecCCC
Confidence 754 35899999999998764322 13468999999999999999999999999999999999999999999 99
Q ss_pred eEecCCcccccccCcccccccccCCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccC---CCCceEEee
Q 008172 237 GVFLPRAKLSFRRNGILVERNHGLPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKS---SRSIKVLAK 313 (575)
Q Consensus 237 G~l~s~K~vn~~r~g~~~~~~~~lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~---~~~i~IIaK 313 (575)
|.|+++||||| |++.+++|.+|++|.+||+|+++ ++|+|++|||++++||..+++++.+.+ ..++.||+|
T Consensus 290 g~L~~~KgiNl------P~~~vrin~LtekD~~DL~f~~~-~vD~I~lSfV~saeDV~~l~~~L~~~~~~~~~~~~IIaK 362 (493)
T PRK08187 290 LKLKPEKGLNF------PDTALDLPALTEKDRADLDFVAR-HADLVGYSFVQSPGDVEALQAALAARRPDDWRKLGLVLK 362 (493)
T ss_pred eEecCCCcccc------cCceecCCCCCHhHHHHHHHHHh-cCCEEEECCCCCHHHHHHHHHHHHHhCCCCCCCCeEEEE
Confidence 99999999997 57889999999999999999999 699999999999999999999997754 247899999
Q ss_pred ecCHHHHhcHHHHHhcCC-----EEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhH
Q 008172 314 IENLESLQKFEEIVEASD-----GIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEV 388 (575)
Q Consensus 314 IEt~~av~nldeI~~~sD-----gImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv 388 (575)
|||++|++|+++|+.++| ||||||||||+|+|.+++|.+|++|+.+|+++|||||+||||||||++||.|||||+
T Consensus 363 IET~~gv~Nl~eI~~~ad~~~v~GImiARGDLgvEig~e~~p~~Qk~II~~craagkpvI~ATQmLESM~~~p~PTRAEv 442 (493)
T PRK08187 363 IETPRAVANLPELIVQAAGRQPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVPVIWATQVLEGLVKKGLPSRAEM 442 (493)
T ss_pred ECCHHHHHHHHHHHHHhCcCCCcEEEEEchHhhhhcCcccChHHHHHHHHHHHHhCCCeEEEchhhHhhccCCCCchHHH
Confidence 999999999999999888 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhh
Q 008172 389 ADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELW 431 (575)
Q Consensus 389 ~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~ 431 (575)
+||||| ||+|||||| .|+||+|||++|++|+.++|++
T Consensus 443 tDvAna--dgaDavMLs----~G~ypveaV~~l~~I~~~~e~~ 479 (493)
T PRK08187 443 TDAAMA--ARAECVMLN----KGPYLVEAVTFLDDLLARMDGH 479 (493)
T ss_pred HHHHhh--cCCCEEeec----CCCCHHHHHHHHHHHHHHHHHh
Confidence 999997 999999999 9999999999999999999976
No 19
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=99.96 E-value=1.3e-28 Score=221.80 Aligned_cols=115 Identities=38% Similarity=0.607 Sum_probs=107.2
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEcCChhHHHHHhccCCCCcEEEEcCcHHHHHHhcccCCcEEEEecCCC-CHHHHHHHH
Q 008172 456 AEQICNCAVDMANNLGVDAIFVYTKHGHMASLLSRNRPNPPIFAFTNDDSTRMALNLQWGVIPVLVNLSD-DMETNIAKT 534 (575)
Q Consensus 456 ~~~ia~~av~~a~~~~AkaIVVfT~SG~TAr~VSr~RP~~PIiAvT~~~~~aR~L~L~~GV~Pvl~~~~~-d~d~~i~~a 534 (575)
+|+++.+|+++|.+++|++|||+|.||+||+++|||||.+||||+|++++++|||+|+|||+|++++... +.+++++.+
T Consensus 1 Teaia~aa~~~A~~~~ak~Ivv~T~sG~ta~~isk~RP~~pIiavt~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~a 80 (117)
T PF02887_consen 1 TEAIARAAVELAEDLNAKAIVVFTESGRTARLISKYRPKVPIIAVTPNESVARQLSLYWGVYPVLIEEFDKDTEELIAEA 80 (117)
T ss_dssp HHHHHHHHHHHHHHHTESEEEEE-SSSHHHHHHHHT-TSSEEEEEESSHHHHHHGGGSTTEEEEECSSHSHSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCchHHHHHHhhCCCCeEEEEcCcHHHHhhhhcccceEEEEeccccccHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999998777 899999999
Q ss_pred HHHHHHcCCCCCCCEEEEEecCCCC-CCCccccceEEEEE
Q 008172 535 IDLIKMKGMVKYGDAVLVVLDLTPA-HVTSTAFQSIQVKT 573 (575)
Q Consensus 535 l~~~~~~g~~k~GD~VVvv~G~~~~-~g~t~~~~~i~v~~ 573 (575)
+++++++|++++||.||+++|.|.+ .|.| |+++|++
T Consensus 81 ~~~~~~~g~~~~gd~vVv~~g~~~~~~g~t---n~~~v~~ 117 (117)
T PF02887_consen 81 LEYAKERGLLKPGDKVVVVAGMPFGTPGGT---NTIRVVR 117 (117)
T ss_dssp HHHHHHTTSS-TTSEEEEEEESSTTTTSSE---EEEEEEE
T ss_pred HHHHHHcCCCCCCCEEEEEeCCCCCCCCCC---EEEEEEC
Confidence 9999999999999999999999885 7877 9999985
No 20
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=99.66 E-value=2.1e-16 Score=160.43 Aligned_cols=136 Identities=18% Similarity=0.197 Sum_probs=114.8
Q ss_pred cCCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHh--------------------------ccCCCCceEEe
Q 008172 259 GLPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVS--------------------------GKSSRSIKVLA 312 (575)
Q Consensus 259 ~lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~--------------------------~~~~~~i~IIa 312 (575)
.+.+++..|...|++++|.|+++|++|||+|++|++++.+.++ ..+ +++.+++
T Consensus 65 ~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n-~~~~vi~ 143 (249)
T TIGR03239 65 PVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATIN-DNITVLV 143 (249)
T ss_pred cEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhc-cccEEEE
Confidence 3556778899999999999999999999999999999975533 233 6789999
Q ss_pred eecCHHHHhcHHHHHhc--CCEEEEeCCCCCCCCCC------CChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCC
Q 008172 313 KIENLESLQKFEEIVEA--SDGIMVARGDLGVDIPL------EQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPT 384 (575)
Q Consensus 313 KIEt~~av~nldeI~~~--sDgImIaRGDLg~e~~~------e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~Pt 384 (575)
+|||++|++|+++|+++ .|++++|++||+.+++. +.+..+..+++.+|+++|||+++. .++
T Consensus 144 ~IEt~~av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~-----------~~~ 212 (249)
T TIGR03239 144 QIESQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGIL-----------APV 212 (249)
T ss_pred EECCHHHHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEc-----------CCC
Confidence 99999999999999998 89999999999999986 356667779999999999999863 122
Q ss_pred hhhHhhHHHHHHcccceEEeccCcC
Q 008172 385 RAEVADVSEAVRQYADALMLSGESA 409 (575)
Q Consensus 385 rAEv~Dv~nav~~G~D~vmLs~ETa 409 (575)
. .+...++..|++.++++.++.
T Consensus 213 ~---~~~~~~~~~G~~~~~~~~D~~ 234 (249)
T TIGR03239 213 E---ADARRYLEWGATFVAVGSDLG 234 (249)
T ss_pred H---HHHHHHHHcCCCEEEEhHHHH
Confidence 2 245778899999999987765
No 21
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=99.66 E-value=2.8e-16 Score=160.17 Aligned_cols=136 Identities=18% Similarity=0.238 Sum_probs=114.8
Q ss_pred cCCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHh--------------------------ccCCCCceEEe
Q 008172 259 GLPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVS--------------------------GKSSRSIKVLA 312 (575)
Q Consensus 259 ~lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~--------------------------~~~~~~i~IIa 312 (575)
.+.++++.|...|++++|.|+++|++|||+|++|++++.+.++ ..+ +++.+++
T Consensus 72 ~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an-~~~~vi~ 150 (256)
T PRK10558 72 PVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSN-KNITVLV 150 (256)
T ss_pred cEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhc-cccEEEE
Confidence 4567788999999999999999999999999999999865543 233 5789999
Q ss_pred eecCHHHHhcHHHHHhc--CCEEEEeCCCCCCCCCC------CChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCC
Q 008172 313 KIENLESLQKFEEIVEA--SDGIMVARGDLGVDIPL------EQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPT 384 (575)
Q Consensus 313 KIEt~~av~nldeI~~~--sDgImIaRGDLg~e~~~------e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~Pt 384 (575)
+|||++|++|++||+++ .|++|+|++||+.+++. +.+..+..+++.+|+++|||+++. .++
T Consensus 151 ~IEt~~av~ni~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~~-----------~~~ 219 (256)
T PRK10558 151 QIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGIL-----------APV 219 (256)
T ss_pred EECCHHHHHHHHHHhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEEc-----------CCC
Confidence 99999999999999998 89999999999999985 346677779999999999999862 233
Q ss_pred hhhHhhHHHHHHcccceEEeccCcC
Q 008172 385 RAEVADVSEAVRQYADALMLSGESA 409 (575)
Q Consensus 385 rAEv~Dv~nav~~G~D~vmLs~ETa 409 (575)
- .+...++..|++.++++.|+.
T Consensus 220 ~---~~~~~~~~~G~~~v~~~~D~~ 241 (256)
T PRK10558 220 E---ADARRYLEWGATFVAVGSDLG 241 (256)
T ss_pred H---HHHHHHHHcCCCEEEEchHHH
Confidence 2 234677899999999997755
No 22
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=99.63 E-value=6.7e-16 Score=158.05 Aligned_cols=136 Identities=15% Similarity=0.209 Sum_probs=114.6
Q ss_pred CCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHh-----ccC---------------------CCCceEEee
Q 008172 260 LPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVS-----GKS---------------------SRSIKVLAK 313 (575)
Q Consensus 260 lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~-----~~~---------------------~~~i~IIaK 313 (575)
+.+++..|...|++++|.|+++|++|+|+|+++++++.+..+ .+| ++++.+|++
T Consensus 72 lVRvp~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~q 151 (267)
T PRK10128 72 VIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQ 151 (267)
T ss_pred EEECCCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEE
Confidence 446667889999999999999999999999999999987753 111 257899999
Q ss_pred ecCHHHHhcHHHHHhc--CCEEEEeCCCCCCCCCC------CChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCCh
Q 008172 314 IENLESLQKFEEIVEA--SDGIMVARGDLGVDIPL------EQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTR 385 (575)
Q Consensus 314 IEt~~av~nldeI~~~--sDgImIaRGDLg~e~~~------e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~Ptr 385 (575)
|||++|++|++||+++ .|++++|++||+.+++. +++..+.++++++|+++|||+++. .++.
T Consensus 152 iEt~~a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~-----------~~~~ 220 (267)
T PRK10128 152 VESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFL-----------AVDP 220 (267)
T ss_pred ECCHHHHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEc-----------CCCH
Confidence 9999999999999999 89999999999999985 566677789999999999999962 1222
Q ss_pred hhHhhHHHHHHcccceEEeccCcC
Q 008172 386 AEVADVSEAVRQYADALMLSGESA 409 (575)
Q Consensus 386 AEv~Dv~nav~~G~D~vmLs~ETa 409 (575)
.+...++..|++.+.++.|+.
T Consensus 221 ---~~a~~~~~~G~~~v~~g~D~~ 241 (267)
T PRK10128 221 ---DMAQKCLAWGANFVAVGVDTM 241 (267)
T ss_pred ---HHHHHHHHcCCcEEEEChHHH
Confidence 344678899999999998764
No 23
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=2.6e-15 Score=148.30 Aligned_cols=136 Identities=17% Similarity=0.206 Sum_probs=115.8
Q ss_pred cCCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHh---------------------------ccCCCCceEE
Q 008172 259 GLPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVS---------------------------GKSSRSIKVL 311 (575)
Q Consensus 259 ~lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~---------------------------~~~~~~i~II 311 (575)
++.+++..|...|+..+|.|+..+.+|||+|+|+++++.+..+ .. +++++++
T Consensus 70 pvVR~p~g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~A-n~~~~~l 148 (255)
T COG3836 70 PVVRPPVGDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQA-NDEICLL 148 (255)
T ss_pred CeeeCCCCCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhc-ccceEEE
Confidence 5567788999999999999999999999999999999866543 33 3789999
Q ss_pred eeecCHHHHhcHHHHHhc--CCEEEEeCCCCCCCCCC------CChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCC
Q 008172 312 AKIENLESLQKFEEIVEA--SDGIMVARGDLGVDIPL------EQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTP 383 (575)
Q Consensus 312 aKIEt~~av~nldeI~~~--sDgImIaRGDLg~e~~~------e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~P 383 (575)
+||||++|++|||+|+++ .||||||++||+.++|. ++|..+.+.++.+.+++||..++-+ +.|
T Consensus 149 vqiEtr~gl~nLDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagil~---------~~p 219 (255)
T COG3836 149 VQIETRAGLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGILA---------ADP 219 (255)
T ss_pred EEEccHHHHHHHHHHHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcCCcccccc---------CCH
Confidence 999999999999999999 99999999999999986 4555555688999999999999742 334
Q ss_pred ChhhHhhHHHHHHcccceEEeccCcC
Q 008172 384 TRAEVADVSEAVRQYADALMLSGESA 409 (575)
Q Consensus 384 trAEv~Dv~nav~~G~D~vmLs~ETa 409 (575)
.. ....+..|+..+-+..+|.
T Consensus 220 ~~-----a~~yl~lGa~fvavG~D~~ 240 (255)
T COG3836 220 AD-----ARRYLALGATFVAVGSDTG 240 (255)
T ss_pred HH-----HHHHHHhCCeEEEEeccHH
Confidence 43 4788999999999987764
No 24
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=99.55 E-value=1.3e-14 Score=147.41 Aligned_cols=136 Identities=15% Similarity=0.154 Sum_probs=113.0
Q ss_pred CCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhc-----cC---------------------CCCceEEee
Q 008172 260 LPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSG-----KS---------------------SRSIKVLAK 313 (575)
Q Consensus 260 lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~-----~~---------------------~~~i~IIaK 313 (575)
+.+++..|..+|+.++|.|+|+|++|+|+|+++++++.++++. ++ +.++.++++
T Consensus 66 ~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~ 145 (249)
T TIGR02311 66 VVRPAIGDPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQ 145 (249)
T ss_pred EEECCCCCHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEE
Confidence 4456667888999999999999999999999999999998762 21 125789999
Q ss_pred ecCHHHHhcHHHHHhc--CCEEEEeCCCCCCCCCC------CChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCCh
Q 008172 314 IENLESLQKFEEIVEA--SDGIMVARGDLGVDIPL------EQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTR 385 (575)
Q Consensus 314 IEt~~av~nldeI~~~--sDgImIaRGDLg~e~~~------e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~Ptr 385 (575)
|||++|++|+++|+++ .|++|+|++||+.+++. +++..+.+++.++|+.+||+.++.. ++.
T Consensus 146 IEt~~av~n~~eI~a~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi~~-----------~~~ 214 (249)
T TIGR02311 146 VETREALDNLEEIAAVEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGILT-----------ADP 214 (249)
T ss_pred ecCHHHHHHHHHHHCCCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceeecC-----------CCH
Confidence 9999999999999988 89999999999999986 3445667788999999999999732 222
Q ss_pred hhHhhHHHHHHcccceEEeccCcC
Q 008172 386 AEVADVSEAVRQYADALMLSGESA 409 (575)
Q Consensus 386 AEv~Dv~nav~~G~D~vmLs~ETa 409 (575)
.+...++..|++.++++.|+.
T Consensus 215 ---~~~~~~~~~G~~~~~~~~D~~ 235 (249)
T TIGR02311 215 ---KLARQYLKLGALFVAVGVDTT 235 (249)
T ss_pred ---HHHHHHHHcCCCEEEEchHHH
Confidence 334667899999999997754
No 25
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=99.36 E-value=3.4e-13 Score=134.18 Aligned_cols=127 Identities=24% Similarity=0.318 Sum_probs=95.8
Q ss_pred HHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccC------CCCceEEeeecCHHHHhcHHHHHhc--CCEEEEeCCC
Q 008172 268 WDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKS------SRSIKVLAKIENLESLQKFEEIVEA--SDGIMVARGD 339 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~------~~~i~IIaKIEt~~av~nldeI~~~--sDgImIaRGD 339 (575)
.+||+ +++.|+|+|++|+|++++|++++.+++.... ..++.++++|||++|++|+++|++. .|++++|++|
T Consensus 75 ~~Dl~-~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G~~D 153 (221)
T PF03328_consen 75 ERDLE-ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFGPAD 153 (221)
T ss_dssp HHHHH-HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHH
T ss_pred hhhhh-hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeCcHH
Confidence 34566 9999999999999999999999999987431 1468999999999999999999976 6999999999
Q ss_pred CCCCCCCC------ChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhh--HhhHHHHHHcccceEE
Q 008172 340 LGVDIPLE------QIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAE--VADVSEAVRQYADALM 403 (575)
Q Consensus 340 Lg~e~~~e------~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAE--v~Dv~nav~~G~D~vm 403 (575)
|+.++|.+ .+..+.++++.+|+++|||.+-. - .+.+..++ ..+..+++..|+|+-+
T Consensus 154 ls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~~i~~-~-------~~~~~d~~~~~~~~~~~~~~G~dg~~ 217 (221)
T PF03328_consen 154 LSASLGIPGQPDHPEVLEARSKVVLAARAAGKPAIDG-V-------FPDFEDAEGLEAEGFRARALGFDGKL 217 (221)
T ss_dssp HHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEEEEEE-E-------ESSSSHHHHHHHHHHHCCEEEEHHCC
T ss_pred HHhhhccCCCCcchHHHHHHHHHHHHHHHcCCCeEEE-e-------eCCHHHHHHHHHHHHHHHHHcccccc
Confidence 99999873 47778889999999999966532 1 11233332 3455666667776643
No 26
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=99.25 E-value=3.6e-11 Score=139.82 Aligned_cols=148 Identities=18% Similarity=0.181 Sum_probs=116.7
Q ss_pred CCccCHHHHHHHHH-cCCCE--EEecCcCChhhHHHHHHHHhccC----CCCceEEeeecCHHHHhcHHHHHhcCCEEEE
Q 008172 263 LSKKDWDDIEFGIA-EGVDF--IAMSFVCDADSVRHLKKYVSGKS----SRSIKVLAKIENLESLQKFEEIVEASDGIMV 335 (575)
Q Consensus 263 lsekD~~di~~al~-~gvd~--I~~SfV~sa~dv~~ir~~l~~~~----~~~i~IIaKIEt~~av~nldeI~~~sDgImI 335 (575)
+=+-..+.|+++++ .|++. |++|||++++|++++++.++..+ ++++.++++||+++|+.|+|+|++++|+++|
T Consensus 618 lf~~qlraI~rald~~G~~~~~ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi~I 697 (795)
T PRK06464 618 AFALECEAIKRVREEMGLTNVEVMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEYFDGFSI 697 (795)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHhCCEEEE
Confidence 33456788889999 79998 99999999999999999987543 2368999999999999999999999999999
Q ss_pred eCCCCCCC-CC---------------CCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCC-CChhhHhhHHHHHHcc
Q 008172 336 ARGDLGVD-IP---------------LEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPT-PTRAEVADVSEAVRQY 398 (575)
Q Consensus 336 aRGDLg~e-~~---------------~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~-PtrAEv~Dv~nav~~G 398 (575)
|+.||+.. ++ .|.|-.+.++++++|+++|||++++.+|.. . |.. +.-.+..|
T Consensus 698 GtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a~------~~p~~-----~~~l~~~G 766 (795)
T PRK06464 698 GSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAPS------DHPDF-----AEWLVEEG 766 (795)
T ss_pred CchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCCC------CcHHH-----HHHHHHCC
Confidence 99999973 33 256777778999999999999999776541 1 322 25567899
Q ss_pred cceEEeccCcCCCCCHHHHHHHHHHHHHHHhh
Q 008172 399 ADALMLSGESAIGPFGQKAVSVLQMASSRMEL 430 (575)
Q Consensus 399 ~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~ 430 (575)
++.+.++.+ ++-.++..+.++|+
T Consensus 767 ~~~ls~~~d---------~~~~~k~~i~~~~~ 789 (795)
T PRK06464 767 IDSISLNPD---------AVVDTWLAVAEVEK 789 (795)
T ss_pred CCEEEEcch---------hHHHHHHHHHHhHH
Confidence 999999854 33344555555554
No 27
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=99.23 E-value=5.5e-11 Score=138.25 Aligned_cols=138 Identities=15% Similarity=0.174 Sum_probs=110.8
Q ss_pred CCCCccCHHHHHHHH-HcCCCE--EEecCcCChhhHHHHHHHHhccC----CCCceEEeeecCHHHHhcHHHHHhcCCEE
Q 008172 261 PTLSKKDWDDIEFGI-AEGVDF--IAMSFVCDADSVRHLKKYVSGKS----SRSIKVLAKIENLESLQKFEEIVEASDGI 333 (575)
Q Consensus 261 p~lsekD~~di~~al-~~gvd~--I~~SfV~sa~dv~~ir~~l~~~~----~~~i~IIaKIEt~~av~nldeI~~~sDgI 333 (575)
|.+=....+.|++++ |.|+.. |++|||++++|++++++.+...+ .+++.++++||+++|+.|+|+|++++|++
T Consensus 609 ~~lf~~qlraI~ral~d~G~~~~~Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDfi 688 (782)
T TIGR01418 609 EEAFRLECRAIKRVREEMGLTNVEVMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDGF 688 (782)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCEE
Confidence 334445667788898 899999 99999999999999999887533 23489999999999999999999999999
Q ss_pred EEeCCCCCC-CCC---------------CCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHc
Q 008172 334 MVARGDLGV-DIP---------------LEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQ 397 (575)
Q Consensus 334 mIaRGDLg~-e~~---------------~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~ 397 (575)
+||+.||+. .++ .|.|..+.++++++|+++|||++++.+|-. ..| ..+.-.+..
T Consensus 689 sIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~~-----~~p-----~~~~~l~~~ 758 (782)
T TIGR01418 689 SIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPS-----DYP-----EVVEFLVEE 758 (782)
T ss_pred EECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCC-----CCH-----HHHHHHHHc
Confidence 999999997 333 256777778999999999999998765331 012 223567789
Q ss_pred ccceEEeccCc
Q 008172 398 YADALMLSGES 408 (575)
Q Consensus 398 G~D~vmLs~ET 408 (575)
|++.+.++.++
T Consensus 759 G~~~ls~~~d~ 769 (782)
T TIGR01418 759 GIDSISLNPDA 769 (782)
T ss_pred CCCEEEECcch
Confidence 99999998653
No 28
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=99.09 E-value=2.3e-10 Score=128.63 Aligned_cols=130 Identities=15% Similarity=0.140 Sum_probs=107.0
Q ss_pred ccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhcc-------C---CCCceEEeeecCHHHHhcHHHHHhcCCEEE
Q 008172 265 KKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGK-------S---SRSIKVLAKIENLESLQKFEEIVEASDGIM 334 (575)
Q Consensus 265 ekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~-------~---~~~i~IIaKIEt~~av~nldeI~~~sDgIm 334 (575)
....+.|.++++.|...|++|||+++++++++++.+... + +.++.+.++||++.|+.++|+|++.+|+++
T Consensus 370 ~~QlrAI~ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~~vDf~s 449 (565)
T TIGR01417 370 RTQLRAILRASAYGKLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKEVDFFS 449 (565)
T ss_pred HHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHhhCCEEE
Confidence 444567789999999999999999999999999887631 1 246899999999999999999999999999
Q ss_pred EeCCCCCC-----C-----CC------CCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcc
Q 008172 335 VARGDLGV-----D-----IP------LEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQY 398 (575)
Q Consensus 335 IaRGDLg~-----e-----~~------~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G 398 (575)
||+.||+. + ++ .|.|..+.++++++|+++||||.++.+|- ..| ..+...+..|
T Consensus 450 IGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a------~~p-----~~~~~l~~~G 518 (565)
T TIGR01417 450 IGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMA------GDE-----RAIPLLLGLG 518 (565)
T ss_pred EChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcC------CCH-----HHHHHHHHCC
Confidence 99999987 2 33 25677777899999999999999866543 123 2446778899
Q ss_pred cceEEec
Q 008172 399 ADALMLS 405 (575)
Q Consensus 399 ~D~vmLs 405 (575)
++.+.++
T Consensus 519 ~~~lsv~ 525 (565)
T TIGR01417 519 LRELSMS 525 (565)
T ss_pred CCEEEEC
Confidence 9998876
No 29
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=98.98 E-value=9.5e-10 Score=123.81 Aligned_cols=130 Identities=15% Similarity=0.073 Sum_probs=107.0
Q ss_pred ccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhcc-------C---CCCceEEeeecCHHHHhcHHHHHhcCCEEE
Q 008172 265 KKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGK-------S---SRSIKVLAKIENLESLQKFEEIVEASDGIM 334 (575)
Q Consensus 265 ekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~-------~---~~~i~IIaKIEt~~av~nldeI~~~sDgIm 334 (575)
....+.|.++.+.|...|++|||.++++++++++.+... + ..++.+.++||++.|+.|+|+|++.+|+++
T Consensus 371 ~~QlrAilra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~mIE~p~a~~~~d~i~~~vDf~s 450 (575)
T PRK11177 371 HDQLRAILRASAFGKLRIMFPMIISVEEVRELKAEIEILKQELRDEGKAFDESIEIGVMVETPAAAVIARHLAKEVDFFS 450 (575)
T ss_pred HHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhccccCCCcEEEEEEeCHHHHHhHHHHHhhCCEEE
Confidence 344567788899999999999999999999999877621 1 246899999999999999999999999999
Q ss_pred EeCCCCCCCC-------------C---CCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcc
Q 008172 335 VARGDLGVDI-------------P---LEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQY 398 (575)
Q Consensus 335 IaRGDLg~e~-------------~---~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G 398 (575)
||+.||+.-+ . .|.|..+.++++++|+++||||.++.+|= ..|... .-.+..|
T Consensus 451 IGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~g~~v~vCGe~A------~dp~~~-----~lLlglG 519 (575)
T PRK11177 451 IGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTGMCGELA------GDERAT-----LLLLGMG 519 (575)
T ss_pred ECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCC------CCHHHH-----HHHHHCC
Confidence 9999999822 1 26677777899999999999999998865 234333 4567899
Q ss_pred cceEEec
Q 008172 399 ADALMLS 405 (575)
Q Consensus 399 ~D~vmLs 405 (575)
.|-+-.+
T Consensus 520 i~~lSm~ 526 (575)
T PRK11177 520 LDEFSMS 526 (575)
T ss_pred CCeEEEC
Confidence 9988776
No 30
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=98.98 E-value=1e-09 Score=113.87 Aligned_cols=128 Identities=21% Similarity=0.227 Sum_probs=100.5
Q ss_pred CHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccC------CCCceEEeeecCHHHHhcHHHHHhc---CCEEEEeC
Q 008172 267 DWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKS------SRSIKVLAKIENLESLQKFEEIVEA---SDGIMVAR 337 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~------~~~i~IIaKIEt~~av~nldeI~~~---sDgImIaR 337 (575)
-..||+..++.|+++|++|.|++++|++.+.+++.... ..++.+++.|||++|+.|+++|++. .|++++|+
T Consensus 74 ~~~di~~~l~~g~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~l~~G~ 153 (288)
T TIGR01588 74 GLADIKAVVKAGVDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARASKRLMGIALGA 153 (288)
T ss_pred HHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhcCCcceEEEeCH
Confidence 35788999999999999999999999999988775311 1358899999999999999999954 68999999
Q ss_pred CCCCCCCCCC------ChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChh--h--HhhHHHHHHcccceEEe
Q 008172 338 GDLGVDIPLE------QIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRA--E--VADVSEAVRQYADALML 404 (575)
Q Consensus 338 GDLg~e~~~e------~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrA--E--v~Dv~nav~~G~D~vmL 404 (575)
.||+.++|.. .+..+..+++.+|+++|+|.| .+ |.+... | ..+..++-..|++|=+.
T Consensus 154 ~Dls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~i-d~---------v~~~~~d~~~l~~~~~~~~~~Gf~Gk~~ 220 (288)
T TIGR01588 154 EDYVTDMKTSRSPDGTELFYARCAILHAARAAGIAAF-DT---------VYSDVNNEEGFLAEAQLIKQLGFDGKSL 220 (288)
T ss_pred HHHHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCcc-cC---------CccCcCCHHHHHHHHHHHHHcCCCceec
Confidence 9999999862 467777899999999999985 22 222211 1 23455577888876443
No 31
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=98.07 E-value=1.6e-05 Score=82.92 Aligned_cols=135 Identities=20% Similarity=0.194 Sum_probs=101.1
Q ss_pred CCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhcc----------CCCCceEEeeecCHHHHhcHHHHHhcC
Q 008172 261 PTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGK----------SSRSIKVLAKIENLESLQKFEEIVEAS 330 (575)
Q Consensus 261 p~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~----------~~~~i~IIaKIEt~~av~nldeI~~~s 330 (575)
|.+=+...+.|..|...|==.|++|||++.+++.++++++.+. ....+.+=++||++.++--+|++++.+
T Consensus 119 p~~f~~QlrAilra~~~g~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~~~~vG~MiEvPsaal~~~~~~~~~ 198 (293)
T PF02896_consen 119 PELFRTQLRAILRAAAEGNLRIMFPMVSTVEEVREAKEILEEVKEELREEGIPFDPDLPVGIMIEVPSAALMADEFAKEV 198 (293)
T ss_dssp HHHHHHHHHHHHHHHHHSEEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGTT-EEEEEE-SHHHHHTHHHHHTTS
T ss_pred hhhHHHHHHHHHHHHhhcCCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhccCccccceEEEEechhHHHHHHHHHHHHC
Confidence 5555566778888888887779999999999999999987643 235689999999999999999999999
Q ss_pred CEEEEeCCCCCC-----CCC-----------CCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHH
Q 008172 331 DGIMVARGDLGV-----DIP-----------LEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEA 394 (575)
Q Consensus 331 DgImIaRGDLg~-----e~~-----------~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~na 394 (575)
|.+-||-.||.. +=. .+.+...-++++++|+++||||.++.+|-. .|..+ --.
T Consensus 199 DF~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~g~~vsvCGe~a~------~p~~~-----~~L 267 (293)
T PF02896_consen 199 DFFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKAGKPVSVCGEMAS------DPEAI-----PLL 267 (293)
T ss_dssp SEEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHTT-EEEEESGGGG------SHHHH-----HHH
T ss_pred CEEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhcCcEEEEecCCCC------CHHHH-----HHH
Confidence 999998777621 111 145666677999999999999999998763 34333 567
Q ss_pred HHcccceEEecc
Q 008172 395 VRQYADALMLSG 406 (575)
Q Consensus 395 v~~G~D~vmLs~ 406 (575)
+..|.|.+-.+.
T Consensus 268 l~lGi~~lSv~p 279 (293)
T PF02896_consen 268 LGLGIRSLSVSP 279 (293)
T ss_dssp HHHT-SEEEE-G
T ss_pred HHcCCCEEEECH
Confidence 889999998873
No 32
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=97.92 E-value=2.4e-05 Score=80.99 Aligned_cols=132 Identities=20% Similarity=0.217 Sum_probs=102.1
Q ss_pred cCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCce---EEeeecCHHHHhcHHHHHhcC---CEEEEeCCC
Q 008172 266 KDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIK---VLAKIENLESLQKFEEIVEAS---DGIMVARGD 339 (575)
Q Consensus 266 kD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~---IIaKIEt~~av~nldeI~~~s---DgImIaRGD 339 (575)
--..|+...+..++|+|.+|-|+++.|+.++...+.... .... +++.|||++|+.|..+|...+ .|+.+|-.|
T Consensus 68 ~g~~Dl~av~~~~~d~v~LPK~e~~~~v~~~~~~l~~~~-~~~~~~~l~a~iETa~gv~~~~eIA~a~~~l~~l~~Ga~D 146 (283)
T COG2301 68 WGADDLAAVVRSAVDGVVLPKVESAADVEELDQLLREAE-AAAGREILIALIETARGVLNAEEIAAASGRLVGLAFGAND 146 (283)
T ss_pred hhHHHHHHHHhcCCCEEEccCcCchHHHHHHHHHhhhhh-ccccchhhHHhhhcHHHHhCHHHHhcCccceeeeEecHHH
Confidence 346778888899999999999999999999998887543 2233 999999999999999999996 899999999
Q ss_pred CCCCCCCC-------ChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEe
Q 008172 340 LGVDIPLE-------QIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALML 404 (575)
Q Consensus 340 Lg~e~~~e-------~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmL 404 (575)
|..+++.. .+..+..+|+.+|+.+|++.+= + .-+=+++|.-- ..+..++...|+|+-++
T Consensus 147 l~~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a~D-~--V~~d~~d~~g~---~~e~~~a~~~Gf~GK~~ 212 (283)
T COG2301 147 LAADLGARRSPDGTDPLRYARAMIVLAARAAGLAAID-G--VYTDINDPEGF---AREAAQAAALGFDGKTC 212 (283)
T ss_pred HHHHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCccc-c--cccccCCHHHH---HHHHHHHHHcCCCcccc
Confidence 98888752 4556778999999999999862 1 10001111111 36677888999987655
No 33
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=97.66 E-value=0.00012 Score=81.84 Aligned_cols=126 Identities=16% Similarity=0.175 Sum_probs=89.9
Q ss_pred CEEEecCcCChhhHHHHHHHHhcc----CC--CCceEEeeecCHHHHhcHHHHHhc----CCEEEEeCCCCCCCCCCC--
Q 008172 280 DFIAMSFVCDADSVRHLKKYVSGK----SS--RSIKVLAKIENLESLQKFEEIVEA----SDGIMVARGDLGVDIPLE-- 347 (575)
Q Consensus 280 d~I~~SfV~sa~dv~~ir~~l~~~----~~--~~i~IIaKIEt~~av~nldeI~~~----sDgImIaRGDLg~e~~~e-- 347 (575)
=+|.+|-+++++|++.+.+.+... |. ..+++++.|||..|+-|++||+.. +.|+..||.|+..+++..
T Consensus 186 pyi~LPKves~~Ev~~~~~~~~~~E~~~gl~~gtiki~vlIET~~a~~~~~eIa~alr~rv~gLn~G~~Dy~~sli~~~~ 265 (511)
T cd00480 186 PYFYLPKMESPLEARLWNDVFSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSEIKTFR 265 (511)
T ss_pred cEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEECCHHHHHHHHHHHHhccCcceeeecChHHHHHHhccccc
Confidence 389999999999999998877532 11 258999999999999999999977 469999999999988421
Q ss_pred -----------------C-hHHHHHHHHHHHHHcCCCEE--EehhhH-HhhhcCCCCChhh-HhhHHHHHHcccceEEec
Q 008172 348 -----------------Q-IPTVQEIIIHVCRQLNKPVI--VASQLL-ESMVEYPTPTRAE-VADVSEAVRQYADALMLS 405 (575)
Q Consensus 348 -----------------~-v~~~Qk~Ii~~c~~~gKPvi--vaTq~L-eSM~~~p~PtrAE-v~Dv~nav~~G~D~vmLs 405 (575)
. +..+++.++.+|+++|.+.| ++.++- ..|-..+...-+. ..|...+...|+||-+.-
T Consensus 266 ~~~~~~~pd~~~~~m~~~~l~ay~~~lv~aa~a~G~~AIdg~~a~i~~k~d~~~~~~d~~gl~~dk~~~~~~GfdGkwvi 345 (511)
T cd00480 266 NHPDFVLPDRAKVTMTSPFMRAYEKLLVKTCHRRGAHAMGGMAAQIPIKGDPAANEAAMAKVRADKLREAKAGHDGTWVA 345 (511)
T ss_pred cCccccCCcccccccccHHHHHHHHHHHHHHHHcCCCccccchhhccccCCcccchhHHHHHHHHHHHHHhCCCCccccc
Confidence 1 44567789999999999874 222221 0111100001111 256667889999987664
No 34
>PRK09255 malate synthase; Validated
Probab=97.56 E-value=0.00071 Score=75.67 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=89.9
Q ss_pred HcCCCEEEecCcCChhhHHHHHHHHhcc----C--CCCceEEeeecCHHHHhcHHHHHhc----CCEEEEeCCCCCCC--
Q 008172 276 AEGVDFIAMSFVCDADSVRHLKKYVSGK----S--SRSIKVLAKIENLESLQKFEEIVEA----SDGIMVARGDLGVD-- 343 (575)
Q Consensus 276 ~~gvd~I~~SfV~sa~dv~~ir~~l~~~----~--~~~i~IIaKIEt~~av~nldeI~~~----sDgImIaRGDLg~e-- 343 (575)
..|+ +|.+|-+++++|++.+.+.+... | ...+++.+.|||..|+-|++||+.. +.|+..||.|+..+
T Consensus 204 g~gp-~i~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~a~r~Rl~gLn~G~~Dy~~S~i 282 (531)
T PRK09255 204 GSGP-YFYLPKLESHLEARLWNDVFVFAEDRLGLPRGTIKATVLIETLPAAFEMDEILYELREHIAGLNCGRWDYIFSYI 282 (531)
T ss_pred CCCc-EEeccCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHHHHHHHHHHhccCceEEEEcChHHhhhhHH
Confidence 4567 99999999999999998887631 1 1358999999999999999999965 68999999999865
Q ss_pred --CCC----------------CChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCCh----------hh-HhhHHHH
Q 008172 344 --IPL----------------EQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTR----------AE-VADVSEA 394 (575)
Q Consensus 344 --~~~----------------e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~Ptr----------AE-v~Dv~na 394 (575)
++. +-+...++.++.+|+++|...|-. |-. -.|.+ +. ..|-...
T Consensus 283 k~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aara~G~~AIdG------m~a-~ip~k~D~~~n~~a~~g~r~dk~r~ 355 (531)
T PRK09255 283 KTLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCHKRGAHAMGG------MAA-FIPIKNDPEANEAALAKVRADKERE 355 (531)
T ss_pred HHhccCCCCcCCcccccccchHHHHHHHHHHHHHHHHcCCCccCc------hhh-cCCcccChhhhHHHHHHHHHHHHHH
Confidence 221 223335778889999999997741 211 12321 11 2455668
Q ss_pred HHcccceEEec
Q 008172 395 VRQYADALMLS 405 (575)
Q Consensus 395 v~~G~D~vmLs 405 (575)
..+|+||-++-
T Consensus 356 ~~lGfDGkwvi 366 (531)
T PRK09255 356 ANDGHDGTWVA 366 (531)
T ss_pred HhCCCCcceec
Confidence 89999997773
No 35
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=97.50 E-value=0.00028 Score=78.47 Aligned_cols=129 Identities=17% Similarity=0.183 Sum_probs=93.6
Q ss_pred HHHHHHHHc--CCCEEEecCcCChhhHHHHHHHHhcc----C--CCCceEEeeecCHHHHhcHHHHHhc----CCEEEEe
Q 008172 269 DDIEFGIAE--GVDFIAMSFVCDADSVRHLKKYVSGK----S--SRSIKVLAKIENLESLQKFEEIVEA----SDGIMVA 336 (575)
Q Consensus 269 ~di~~al~~--gvd~I~~SfV~sa~dv~~ir~~l~~~----~--~~~i~IIaKIEt~~av~nldeI~~~----sDgImIa 336 (575)
.|++..++. |+ ||.+|-+++++|++.+.+.+... | ...+++.+.|||..|+-|++||+.. +.|+..|
T Consensus 174 hd~~~l~~~g~gp-yi~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~alr~Rl~gLn~G 252 (511)
T cd00727 174 HNAKALLARGSGP-YFYLPKMESHLEARLWNDVFVFAQDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCG 252 (511)
T ss_pred hhHHHHHhcCCCc-EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCHHHHHHHHHHHHhccCceEEEEcC
Confidence 344444454 48 99999999999999998887531 1 1358999999999999999999965 6899999
Q ss_pred CCCCCCCCC----C----------------CChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCCh-hh--------
Q 008172 337 RGDLGVDIP----L----------------EQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTR-AE-------- 387 (575)
Q Consensus 337 RGDLg~e~~----~----------------e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~Ptr-AE-------- 387 (575)
|.|+..++. . +-+...++.++.+|+++|...|-. |-. -.|.+ .+
T Consensus 253 ~~Dy~~sli~~~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~a~G~~AIdG------m~a-~ip~kdd~~~n~~~l~ 325 (511)
T cd00727 253 RWDYIFSFIKKFRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCHRRGAHAMGG------MAA-QIPIKDDPAANEAALA 325 (511)
T ss_pred hHHHHHHHHHhhccCCCccCCcccccccchHHHHHHHHHHHHHHHHcCCCcccc------hhh-cCCcccchhhHHHHHH
Confidence 999988772 1 122334667999999999997741 211 12322 11
Q ss_pred --HhhHHHHHHcccceEEec
Q 008172 388 --VADVSEAVRQYADALMLS 405 (575)
Q Consensus 388 --v~Dv~nav~~G~D~vmLs 405 (575)
..|-.....+|+||-++-
T Consensus 326 ~~r~dk~~~~~lGfDGkwvi 345 (511)
T cd00727 326 KVRADKLREATAGHDGTWVA 345 (511)
T ss_pred HHHHHHHHHHhCCCCccccc
Confidence 355666889999997773
No 36
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=97.21 E-value=0.00067 Score=75.48 Aligned_cols=128 Identities=16% Similarity=0.172 Sum_probs=91.4
Q ss_pred HHHHHHcC-CCEEEecCcCChhhHHHHHHHHhcc----C--CCCceEEeeecCHHHHhcHHHHHhc----CCEEEEeCCC
Q 008172 271 IEFGIAEG-VDFIAMSFVCDADSVRHLKKYVSGK----S--SRSIKVLAKIENLESLQKFEEIVEA----SDGIMVARGD 339 (575)
Q Consensus 271 i~~al~~g-vd~I~~SfV~sa~dv~~ir~~l~~~----~--~~~i~IIaKIEt~~av~nldeI~~~----sDgImIaRGD 339 (575)
++..++.| --+|.+|-|++++|++.+.+.+... | ...+++.+.|||+.|+-|++||+.. +.|+..||.|
T Consensus 177 ~~~l~~~g~Gp~i~LPKves~~Ev~~~~~vf~~aE~~lglp~gtIk~~vlIET~~A~~nm~EIa~alr~Rl~gLn~G~~D 256 (511)
T TIGR01344 177 ARALLKKGKGPYFYLPKLESHQEARLWNDVFHFAQDFLGLPRGTIKATVLIETLPAAFEMDEILYELREHISGLNCGRWD 256 (511)
T ss_pred HHHHHhCCCCCEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCHHHHHhHHHHHHhccCceeEEEcChHH
Confidence 33345543 2499999999999999988876521 1 1358999999999999999999975 6899999999
Q ss_pred CCCCCC----C----------------CChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCCh--------hh---H
Q 008172 340 LGVDIP----L----------------EQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTR--------AE---V 388 (575)
Q Consensus 340 Lg~e~~----~----------------e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~Ptr--------AE---v 388 (575)
+..++. . +-+...++.++.+|+++|...|- -|-. -.|.+ |- .
T Consensus 257 y~~S~ik~~~~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aara~G~~AId------Gm~a-~ip~k~D~~~n~~al~~vr 329 (511)
T TIGR01344 257 YIFSFIKTLRNLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCHRRGAHAMG------GMAA-FIPIKGDPAANEAAMNKVR 329 (511)
T ss_pred hhhhHHHHHhhCCCCcCCcccccccccHHHHHHHHHHHHHHHHcCCCccC------chhc-cCCcccChhhHHHHHHHHH
Confidence 984333 1 23344578888999999998874 1211 01222 11 3
Q ss_pred hhHHHHHHcccceEEec
Q 008172 389 ADVSEAVRQYADALMLS 405 (575)
Q Consensus 389 ~Dv~nav~~G~D~vmLs 405 (575)
.|-.....+|+||-++-
T Consensus 330 ~dk~re~~lGfDGkwvi 346 (511)
T TIGR01344 330 ADKIREAKNGHDGTWVA 346 (511)
T ss_pred HHHHHHHhCCCCccccC
Confidence 55566889999997763
No 37
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=97.12 E-value=0.0019 Score=75.61 Aligned_cols=125 Identities=16% Similarity=0.118 Sum_probs=96.9
Q ss_pred HHHHHHH-cCCCEEEecCcCChhhHHHHHHHHhc-------c-C--CCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCC
Q 008172 270 DIEFGIA-EGVDFIAMSFVCDADSVRHLKKYVSG-------K-S--SRSIKVLAKIENLESLQKFEEIVEASDGIMVARG 338 (575)
Q Consensus 270 di~~al~-~gvd~I~~SfV~sa~dv~~ir~~l~~-------~-~--~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRG 338 (575)
.|.+|-. .|-=.|++|||.+.++++++|+.+.+ . | ..++.+=++||+|.|+--+|++++.+|.+=||--
T Consensus 541 Ailra~~~~g~l~im~Pmv~~~~E~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~MiE~Paa~~~~~~~a~~~DF~SIGtN 620 (748)
T PRK11061 541 AMLRANAATGNLSILLPMVTSIDEVDEARRLIDRAGREVEEMLGYEIPKPRIGIMIEVPSMVFMLPHLASRVDFISVGTN 620 (748)
T ss_pred HHHHHHhhCCCeEEEhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEehHHHHHHHHHHHHhCCEEEECcc
Confidence 3344444 56667999999999999999988763 1 2 1237799999999999999999999999999999
Q ss_pred CCCCCC-----C-----------CCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceE
Q 008172 339 DLGVDI-----P-----------LEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADAL 402 (575)
Q Consensus 339 DLg~e~-----~-----------~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~v 402 (575)
||..=+ . .|.|-...++++++|+++||||.++.+|= ..|... --.+..|.|.+
T Consensus 621 DL~Qy~la~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~~g~~v~vCGe~a------~dp~~~-----~~L~glGi~~l 689 (748)
T PRK11061 621 DLTQYLLAVDRNNTRVASLYDSLHPAMLRALKMIADEAEQHGLPVSLCGEMA------GDPMGA-----LLLIGLGYRHL 689 (748)
T ss_pred HHHHHHHHhcCCChHHHhhcCCCCHHHHHHHHHHHHHHhhCcCEEEEcCCcc------cCHHHH-----HHHHHCCCcEE
Confidence 974311 1 25677777899999999999999998875 235444 45677898886
Q ss_pred Eec
Q 008172 403 MLS 405 (575)
Q Consensus 403 mLs 405 (575)
-.+
T Consensus 690 S~~ 692 (748)
T PRK11061 690 SMN 692 (748)
T ss_pred ccC
Confidence 665
No 38
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.91 E-value=0.011 Score=63.91 Aligned_cols=122 Identities=17% Similarity=0.204 Sum_probs=77.9
Q ss_pred CHHHHHHHHHcCCCEEEecC-------cCChhhHHHHHHHHhccCCCCceEEe-eecCHHHHhcHHHHHhcCCEEEEeCC
Q 008172 267 DWDDIEFGIAEGVDFIAMSF-------VCDADSVRHLKKYVSGKSSRSIKVLA-KIENLESLQKFEEIVEASDGIMVARG 338 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~Sf-------V~sa~dv~~ir~~l~~~~~~~i~IIa-KIEt~~av~nldeI~~~sDgImIaRG 338 (575)
..+.++.+++.|+|+|.+.. ..++.+...+.+++++. ++.||+ .+-|.+....+-+ .=+|+||+|||
T Consensus 143 ~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~---~ipVIaG~V~t~e~A~~l~~--aGAD~V~VG~G 217 (368)
T PRK08649 143 AQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL---DVPVIVGGCVTYTTALHLMR--TGAAGVLVGIG 217 (368)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC---CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCC
Confidence 34566777899999999854 33333455566666553 367887 8888887766554 44999999998
Q ss_pred CCCCCCCC--C--ChHHHH--HHHHHHHHHc-------CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 339 DLGVDIPL--E--QIPTVQ--EIIIHVCRQL-------NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 339 DLg~e~~~--e--~v~~~Q--k~Ii~~c~~~-------gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
-=+..... . .+|.+. ....+.++++ +.|||.+.-+-. -.|++.|+..|||++|+.
T Consensus 218 ~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~------------~~diakAlalGAd~Vm~G 285 (368)
T PRK08649 218 PGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGT------------SGDIAKAIACGADAVMLG 285 (368)
T ss_pred CCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCC------------HHHHHHHHHcCCCeeccc
Confidence 62122111 1 233222 1122222222 689998765542 379999999999999994
No 39
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=96.51 E-value=0.0052 Score=68.90 Aligned_cols=126 Identities=17% Similarity=0.152 Sum_probs=97.4
Q ss_pred HHHHHHHHcCCCEEEecCcCChhhHHHHHHHHh-------ccC---CCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCC
Q 008172 269 DDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVS-------GKS---SRSIKVLAKIENLESLQKFEEIVEASDGIMVARG 338 (575)
Q Consensus 269 ~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~-------~~~---~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRG 338 (575)
+.|.+|-..|-=.|++|||.+.++++++|+.+. ..+ .+++.+=.|||.|.|.-..|.+++++|-+=||--
T Consensus 376 RAilRAS~~G~l~IM~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~~i~lGiMIEvPsAa~~a~~lakevDFfSIGTN 455 (574)
T COG1080 376 RAILRASAHGNLRIMFPMIASLEEIRWAKALLEEAKQELRAEGLAFDEKIELGIMIEVPSAALIADQLAKEVDFFSIGTN 455 (574)
T ss_pred HHHHHhhccCCeEEEEeccccHHHHHHHHHHHHHHHHHHHhcCCccccccceeEEEehhHHHHHHHHHHHhCCEeeeccc
Confidence 444566677888899999999999999998875 222 1368888999999999999999999999999999
Q ss_pred CCCC-----CCC-----------CCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceE
Q 008172 339 DLGV-----DIP-----------LEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADAL 402 (575)
Q Consensus 339 DLg~-----e~~-----------~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~v 402 (575)
||.. +=+ .|.|-..-+.+++.++++||||+++.+|= ..|.-. --.+..|.|-+
T Consensus 456 DLtQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah~~gkwvgmCGElA------gD~~a~-----plLlGlGldEl 524 (574)
T COG1080 456 DLTQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAHRHGKWVGMCGELA------GDPAAT-----PLLLGLGLDEL 524 (574)
T ss_pred HHHHHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHHHHHcCCeeeechhhc------cChhhH-----HHHHhcCcchh
Confidence 9742 111 26677777899999999999999988654 233322 33567888876
Q ss_pred Eec
Q 008172 403 MLS 405 (575)
Q Consensus 403 mLs 405 (575)
-+|
T Consensus 525 Sms 527 (574)
T COG1080 525 SMS 527 (574)
T ss_pred ccC
Confidence 665
No 40
>PLN02626 malate synthase
Probab=96.45 E-value=0.015 Score=65.08 Aligned_cols=124 Identities=19% Similarity=0.238 Sum_probs=87.8
Q ss_pred CEEEecCcCChhhHHHHHHHHhcc----C--CCCceEEeeecCHHHHhcHHHHHhc----CCEEEEeCCCC----CCCCC
Q 008172 280 DFIAMSFVCDADSVRHLKKYVSGK----S--SRSIKVLAKIENLESLQKFEEIVEA----SDGIMVARGDL----GVDIP 345 (575)
Q Consensus 280 d~I~~SfV~sa~dv~~ir~~l~~~----~--~~~i~IIaKIEt~~av~nldeI~~~----sDgImIaRGDL----g~e~~ 345 (575)
-||.+|-+++++|++...+.+... | ...+++.+.|||..|+-|++||+.. +-|+..||-|+ .-.++
T Consensus 213 pYfyLPKles~~Ear~w~dvf~~~E~~lGlp~GTIK~~vLIET~~A~f~meEIl~elr~r~agLn~GrwDyifS~ik~l~ 292 (551)
T PLN02626 213 PFFYLPKMEHSREARLWNDVFEAAEKMAGIPRGSIRATVLIETLPAVFQMEEILYELRDHSAGLNCGRWDYIFSFVKTFR 292 (551)
T ss_pred ceEeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeccHHHHHHHHHHHHHhhhheeeeecChHHHHhHHHHHhc
Confidence 589999999999999998876521 1 2369999999999999999999966 68999999999 22221
Q ss_pred -------CC--C----hHH---HHHHHHHHHHHcCCCEEEehhhHHhh--hcCCCCChhhH----hhHHHHHHcccceEE
Q 008172 346 -------LE--Q----IPT---VQEIIIHVCRQLNKPVIVASQLLESM--VEYPTPTRAEV----ADVSEAVRQYADALM 403 (575)
Q Consensus 346 -------~e--~----v~~---~Qk~Ii~~c~~~gKPvivaTq~LeSM--~~~p~PtrAEv----~Dv~nav~~G~D~vm 403 (575)
.+ . .+. +.+.++..|+++|...|-. |---+ .+.|.++.+.. .|-.....+|+||-+
T Consensus 293 ~~~~~vlpDr~~vtM~~~f~rAY~~llV~ach~rG~~AIgG--M~a~iP~kdd~~~n~~al~~vr~dk~re~~~GfDG~w 370 (551)
T PLN02626 293 AHPDRLLPDRVQVGMTQHFMKSYVDLLIKTCHKRGVHAMGG--MAAQIPIKDDPAANEAALALVRKDKLREVRAGHDGTW 370 (551)
T ss_pred cCCCCCCCCccccchhhHHHHHHHHHHHHHHHhcCCccccc--ccccccCCCChhhhHHHHHHHHHHHHHHHhcCCCcee
Confidence 11 1 334 4449999999999997641 22111 12233332222 466668899999988
Q ss_pred ec
Q 008172 404 LS 405 (575)
Q Consensus 404 Ls 405 (575)
.-
T Consensus 371 Vi 372 (551)
T PLN02626 371 AA 372 (551)
T ss_pred ec
Confidence 74
No 41
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=96.37 E-value=0.014 Score=69.43 Aligned_cols=137 Identities=17% Similarity=0.165 Sum_probs=100.8
Q ss_pred cCCCCCccCHHHHHHHHHc----CCC---EEEecCcCChhhHHHHHHHHhcc--------CC-CCceEEeeecCHHHHhc
Q 008172 259 GLPTLSKKDWDDIEFGIAE----GVD---FIAMSFVCDADSVRHLKKYVSGK--------SS-RSIKVLAKIENLESLQK 322 (575)
Q Consensus 259 ~lp~lsekD~~di~~al~~----gvd---~I~~SfV~sa~dv~~ir~~l~~~--------~~-~~i~IIaKIEt~~av~n 322 (575)
.-|.+-+-..+.|-.|... |.. .|++|||.+.++++++|+.+.+. |. -++.|=++||++.|.-.
T Consensus 668 ~~pei~~~QlrAil~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~k~~i~~~~~~l~~~~g~~~~~~iG~MiE~P~aal~ 747 (856)
T TIGR01828 668 TYPEIYEMQVRAIMEAAVEVKKEGIDVHPEIMIPLVGEKNELKILKDVLEEVAAEVFKEYGVTVPYEIGTMIEIPRAALT 747 (856)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccCCeEEEEEehHHHHHH
Confidence 3344445555566555443 743 79999999999999999887631 21 23789999999999999
Q ss_pred HHHHHhcCCEEEEeCCCCCCC------------C------------CC-----CChHHHHHHHHHHHHH--cCCCEEEeh
Q 008172 323 FEEIVEASDGIMVARGDLGVD------------I------------PL-----EQIPTVQEIIIHVCRQ--LNKPVIVAS 371 (575)
Q Consensus 323 ldeI~~~sDgImIaRGDLg~e------------~------------~~-----e~v~~~Qk~Ii~~c~~--~gKPvivaT 371 (575)
+|+|++.+|.+-||--||..- + |. +.|-...++++++|++ +|+||.++.
T Consensus 748 ad~la~~~DFfSiGTNDLtQ~tlg~dR~~~~~~~~~y~~~~i~~~~P~~~ld~paV~~li~~~i~~a~~~~~~~~vgvCG 827 (856)
T TIGR01828 748 ADKIAEEADFFSFGTNDLTQMTFGFSRDDAGKFLPKYLEKGILEKDPFESLDQTGVGQLMRMAVEKGRQTRPNLKVGICG 827 (856)
T ss_pred HHHHHHhCCEEEECccHHHHHHhccCccchhhhHHHHHhcCcccCCcccccCcHHHHHHHHHHHHHHhhcCCCCEEEeCC
Confidence 999999999999997776321 1 21 3466777899999998 899999988
Q ss_pred hhHHhhhcCCCCChhhHhhHHHHHHcccceEEecc
Q 008172 372 QLLESMVEYPTPTRAEVADVSEAVRQYADALMLSG 406 (575)
Q Consensus 372 q~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ 406 (575)
++- ..|.-. ...+..|.|-+-.|.
T Consensus 828 E~a------~dp~~i-----~~l~~~Gi~~~S~sp 851 (856)
T TIGR01828 828 EHG------GDPSSI-----EFCHKIGLNYVSCSP 851 (856)
T ss_pred CCc------CCHHHH-----HHHHHCCCCEEEECh
Confidence 763 244443 456778999888773
No 42
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=96.13 E-value=0.05 Score=58.82 Aligned_cols=119 Identities=18% Similarity=0.293 Sum_probs=72.5
Q ss_pred HHHHHHHHHcCCCEEEec-------CcCChhhHHHHHHHHhccCCCCceEEe-eecCHHHHhcHHHHHhcCCEEEEeCCC
Q 008172 268 WDDIEFGIAEGVDFIAMS-------FVCDADSVRHLKKYVSGKSSRSIKVLA-KIENLESLQKFEEIVEASDGIMVARGD 339 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~S-------fV~sa~dv~~ir~~l~~~~~~~i~IIa-KIEt~~av~nldeI~~~sDgImIaRGD 339 (575)
.+..+.+++.|+|+|++. |+....+-..+.+++++. ++.||+ .+-+.+....+-+ .=+|+||++||-
T Consensus 145 ~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~---~IPVI~G~V~t~e~A~~~~~--aGaDgV~~G~gg 219 (369)
T TIGR01304 145 REIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL---DVPVIAGGVNDYTTALHLMR--TGAAGVIVGPGG 219 (369)
T ss_pred HHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC---CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCC
Confidence 455567789999999975 333333445566655543 367776 7777665544443 349999999875
Q ss_pred CCCCCCC--CChHHHHHHHHHHH----H----Hc---CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 340 LGVDIPL--EQIPTVQEIIIHVC----R----QL---NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 340 Lg~e~~~--e~v~~~Qk~Ii~~c----~----~~---gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
-...-.. ..+| |...+..| + +. ..|||.+.-+-. -.|++.|+..|||++|+.
T Consensus 220 ~~~~~~~lg~~~p--~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~t------------g~di~kAlAlGAdaV~iG 284 (369)
T TIGR01304 220 ANTTRLVLGIEVP--MATAIADVAAARRDYLDETGGRYVHVIADGGIET------------SGDLVKAIACGADAVVLG 284 (369)
T ss_pred CcccccccCCCCC--HHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCC------------HHHHHHHHHcCCCEeeeH
Confidence 3211101 1223 22222222 2 12 389998765542 368999999999999995
No 43
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.97 E-value=0.11 Score=55.39 Aligned_cols=124 Identities=24% Similarity=0.357 Sum_probs=78.3
Q ss_pred ccCHHHHHHHHHcCCCEEEecCcC-ChhhHHHHHHHHhccCCCCceEEe-eecCHHHHhcHHHHHhc-CCEEEEe--CCC
Q 008172 265 KKDWDDIEFGIAEGVDFIAMSFVC-DADSVRHLKKYVSGKSSRSIKVLA-KIENLESLQKFEEIVEA-SDGIMVA--RGD 339 (575)
Q Consensus 265 ekD~~di~~al~~gvd~I~~SfV~-sa~dv~~ir~~l~~~~~~~i~IIa-KIEt~~av~nldeI~~~-sDgImIa--RGD 339 (575)
+++.+.+...++.|+|+|.+++-. +.+.+.++.+.+++.. .++.|++ .+.+.+...++ ++. +|+|.++ +|-
T Consensus 93 ~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~-p~v~Vi~G~v~t~~~A~~l---~~aGaD~I~vg~g~G~ 168 (325)
T cd00381 93 EDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKY-PNVDVIAGNVVTAEAARDL---IDAGADGVKVGIGPGS 168 (325)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHC-CCceEEECCCCCHHHHHHH---HhcCCCEEEECCCCCc
Confidence 456778888899999999886532 2244444444455444 3577775 77776665444 344 9999984 222
Q ss_pred C--CCC---CCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 340 L--GVD---IPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 340 L--g~e---~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
- +-. .+.+.+ .+-..+.+.++..+.|||.+-.+- .-.|++.|+..|+|++|+.
T Consensus 169 ~~~t~~~~g~g~p~~-~~i~~v~~~~~~~~vpVIA~GGI~------------~~~di~kAla~GA~~VmiG 226 (325)
T cd00381 169 ICTTRIVTGVGVPQA-TAVADVAAAARDYGVPVIADGGIR------------TSGDIVKALAAGADAVMLG 226 (325)
T ss_pred CcccceeCCCCCCHH-HHHHHHHHHHhhcCCcEEecCCCC------------CHHHHHHHHHcCCCEEEec
Confidence 1 000 111222 223456677777899999654333 3468899999999999993
No 44
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=95.81 E-value=0.16 Score=54.70 Aligned_cols=124 Identities=21% Similarity=0.291 Sum_probs=82.3
Q ss_pred CccCHHHHHHHHHcCCCEEEe--cCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCC--
Q 008172 264 SKKDWDDIEFGIAEGVDFIAM--SFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGD-- 339 (575)
Q Consensus 264 sekD~~di~~al~~gvd~I~~--SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGD-- 339 (575)
.+.|.+.++..++.|+|+|++ ++..+...+..++++ ++...+-..|.--+-|.++..+|-+ .-+|+|-||=|-
T Consensus 106 ~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~i-k~~~~~~~viaGNV~T~e~a~~L~~--aGad~vkVGiGpGs 182 (352)
T PF00478_consen 106 RDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKI-KKKFPDVPVIAGNVVTYEGAKDLID--AGADAVKVGIGPGS 182 (352)
T ss_dssp STCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHH-HHHSTTSEEEEEEE-SHHHHHHHHH--TT-SEEEESSSSST
T ss_pred CHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHH-HHhCCCceEEecccCCHHHHHHHHH--cCCCEEEEeccCCc
Confidence 345678888888999999988 677777777666654 3333233456668999999887543 339999998552
Q ss_pred -------CCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 340 -------LGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 340 -------Lg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
+|+-. + -..+-.+..+.|+++++|||--..+= --.|++.|+..|||+|||.
T Consensus 183 iCtTr~v~GvG~--P-Q~tAv~~~a~~a~~~~v~iIADGGi~------------~sGDi~KAla~GAd~VMlG 240 (352)
T PF00478_consen 183 ICTTREVTGVGV--P-QLTAVYECAEAARDYGVPIIADGGIR------------TSGDIVKALAAGADAVMLG 240 (352)
T ss_dssp TBHHHHHHSBSC--T-HHHHHHHHHHHHHCTTSEEEEESS-S------------SHHHHHHHHHTT-SEEEES
T ss_pred ccccccccccCC--c-HHHHHHHHHHHhhhccCceeecCCcC------------cccceeeeeeecccceeec
Confidence 22222 2 22233466677888999999743322 3589999999999999994
No 45
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=95.31 E-value=0.04 Score=61.89 Aligned_cols=133 Identities=18% Similarity=0.220 Sum_probs=104.0
Q ss_pred CCEEEecCcCChhhHHHHHHHHhccC----------CCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCC-----CC
Q 008172 279 VDFIAMSFVCDADSVRHLKKYVSGKS----------SRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLG-----VD 343 (575)
Q Consensus 279 vd~I~~SfV~sa~dv~~ir~~l~~~~----------~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg-----~e 343 (575)
-=-|.+|+|.+.+++++.|+++.+.. .....|=+++|-+..+..+|+++...|-+=||-.||. ++
T Consensus 559 ~L~imLPMVt~v~E~~~Ar~li~ra~~~v~~~~~~~~~~~~iG~MlEvPsll~~L~~L~~~vDFvSVGtNDL~QyllAvD 638 (756)
T COG3605 559 NLRILLPMVTEVDEVDEARRLIERAVREVSEMGGYLPPKPRIGAMLEVPSLLFQLDELAKRVDFVSVGTNDLTQYLLAVD 638 (756)
T ss_pred CceeeeecccchHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcceeeehhHHHHhHHHHHhhCCEEEecchHHHHHHHHHh
Confidence 34599999999999999999886321 2346788999999999999999999999999999974 22
Q ss_pred CCC-----------CChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCC
Q 008172 344 IPL-----------EQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGP 412 (575)
Q Consensus 344 ~~~-----------e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~ 412 (575)
=+- +.+-.+-|+|.++|.++|+||-++.+|- ..|--| .--+..|++.+-++ -|++|+
T Consensus 639 R~N~RVad~yD~L~pa~LraLk~I~~a~~~~~~pVtlCGEMA------g~Pl~A-----~~LigLGfrslSMn-~~~v~~ 706 (756)
T COG3605 639 RNNTRVADRYDSLHPAFLRALKQIVRAAERHGTPVTLCGEMA------GDPLSA-----MALIGLGFRSLSMN-PRSVGP 706 (756)
T ss_pred cCCchhhhhhcccCHHHHHHHHHHHHHHHhcCCCeeehhhhc------CChHHH-----HHHHhcCcCccccC-cccccc
Confidence 232 4456677999999999999999998875 467666 66788999998887 467774
Q ss_pred CHHHHHHHHHHHHHHH
Q 008172 413 FGQKAVSVLQMASSRM 428 (575)
Q Consensus 413 yPveaV~~m~~I~~~a 428 (575)
||+|-.-+..+
T Consensus 707 -----VK~ml~~ld~~ 717 (756)
T COG3605 707 -----VKYLLRHLDLA 717 (756)
T ss_pred -----HHHHHHhccHH
Confidence 56555444333
No 46
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=95.23 E-value=0.057 Score=60.29 Aligned_cols=92 Identities=16% Similarity=0.262 Sum_probs=77.5
Q ss_pred CCCEEEecCcCChhhHHHHHHHHhccC----------------------CCCceEEeeecCHHHHhcHHHHHhc-C----
Q 008172 278 GVDFIAMSFVCDADSVRHLKKYVSGKS----------------------SRSIKVLAKIENLESLQKFEEIVEA-S---- 330 (575)
Q Consensus 278 gvd~I~~SfV~sa~dv~~ir~~l~~~~----------------------~~~i~IIaKIEt~~av~nldeI~~~-s---- 330 (575)
.+-.|++||.++++|+.++..+.++.+ ...+.||.=+|+.+++.|.++|++. .
T Consensus 122 pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~~~~~~~~i~VIPLFEt~~dL~~a~~Il~~~l~~~~ 201 (506)
T TIGR02751 122 PIFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWLGEFKPKKIRVIPLIEDKDSLLNADEIVKEYAEAHE 201 (506)
T ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhcccccCCCCCcCeecCcCCHHHHHhHHHHHHHHHHhcC
Confidence 455799999999999999987766543 1246899999999999999999987 2
Q ss_pred ---CEEEEeCCCCCCCCCC----CChHHHHHHHHHHHHHcCCCEEE
Q 008172 331 ---DGIMVARGDLGVDIPL----EQIPTVQEIIIHVCRQLNKPVIV 369 (575)
Q Consensus 331 ---DgImIaRGDLg~e~~~----e~v~~~Qk~Ii~~c~~~gKPviv 369 (575)
=-||+||.|=+.+.|+ -.+-.+|.++.+.|.++|.++..
T Consensus 202 ~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~p 247 (506)
T TIGR02751 202 PEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYP 247 (506)
T ss_pred cCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 1579999999999996 45778899999999999998874
No 47
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=94.93 E-value=0.26 Score=55.46 Aligned_cols=123 Identities=18% Similarity=0.301 Sum_probs=78.3
Q ss_pred ccCHHHHHHHHHcCCCEEEecCc--CChhhHHHHHHHHhccCCCCceEEe-eecCHHHHhcHHHHHhc-CCEEEEe--CC
Q 008172 265 KKDWDDIEFGIAEGVDFIAMSFV--CDADSVRHLKKYVSGKSSRSIKVLA-KIENLESLQKFEEIVEA-SDGIMVA--RG 338 (575)
Q Consensus 265 ekD~~di~~al~~gvd~I~~SfV--~sa~dv~~ir~~l~~~~~~~i~IIa-KIEt~~av~nldeI~~~-sDgImIa--RG 338 (575)
+.+.+.++..++.|+|.|.+..- .+...+..++++- +.. .++.|+| -+-|.+...+ .++. +|+|.++ +|
T Consensus 240 ~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik-~~~-~~~~v~aG~V~t~~~a~~---~~~aGad~I~vg~g~G 314 (495)
T PTZ00314 240 PEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLK-SNY-PHVDIIAGNVVTADQAKN---LIDAGADGLRIGMGSG 314 (495)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHH-hhC-CCceEEECCcCCHHHHHH---HHHcCCCEEEECCcCC
Confidence 35577778889999999997653 3443233333322 221 3577888 5666655543 3445 9999974 55
Q ss_pred CC-----CCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 339 DL-----GVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 339 DL-----g~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
-- -...+.+.+ .+-..+.+.|++.|.|+|...-+. --.|++.|+..|||++|+.
T Consensus 315 s~~~t~~~~~~g~p~~-~ai~~~~~~~~~~~v~vIadGGi~------------~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 315 SICITQEVCAVGRPQA-SAVYHVARYARERGVPCIADGGIK------------NSGDICKALALGADCVMLG 373 (495)
T ss_pred cccccchhccCCCChH-HHHHHHHHHHhhcCCeEEecCCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 21 112233322 233467778899999999754433 2368899999999999996
No 48
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=94.75 E-value=0.11 Score=61.94 Aligned_cols=137 Identities=19% Similarity=0.178 Sum_probs=101.5
Q ss_pred ccCCCCCccCHHHHHHHHH----cCCC---EEEecCcCChhhHHHHHHHHh--------ccCC-CCceEEeeecCHHHHh
Q 008172 258 HGLPTLSKKDWDDIEFGIA----EGVD---FIAMSFVCDADSVRHLKKYVS--------GKSS-RSIKVLAKIENLESLQ 321 (575)
Q Consensus 258 ~~lp~lsekD~~di~~al~----~gvd---~I~~SfV~sa~dv~~ir~~l~--------~~~~-~~i~IIaKIEt~~av~ 321 (575)
+..|.+.+-..+.|..|.. .|.+ -|++|||.+.++++.+|+.+. +.|. -++.+=.+||.+.|.-
T Consensus 673 l~~pei~~~QlrAI~~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~r~~i~~~~~~~~~e~g~~~~~~vG~MIEvP~Aal 752 (879)
T PRK09279 673 ITYPEIYEMQARAIFEAAVELKKEGIDVVPEIMIPLVGTVKELKLVKAIIDAVAEEVFAEKGVKLDYKVGTMIELPRAAL 752 (879)
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEehHHHHH
Confidence 3445666666666665543 4643 499999999999999998753 2231 2478999999999999
Q ss_pred cHHHHHhcCCEEEEeCCCCCCC------------C------------CC-----CChHHHHHHHHHHHHH--cCCCEEEe
Q 008172 322 KFEEIVEASDGIMVARGDLGVD------------I------------PL-----EQIPTVQEIIIHVCRQ--LNKPVIVA 370 (575)
Q Consensus 322 nldeI~~~sDgImIaRGDLg~e------------~------------~~-----e~v~~~Qk~Ii~~c~~--~gKPviva 370 (575)
-.|+|++.+|.+-||--||..- + |+ +.|-...+..+++|++ .|+||.++
T Consensus 753 ~ad~iA~~adFfSiGTNDLTQ~t~g~dRdd~~~fl~~y~~~~i~~~dPf~~lD~~aV~~Li~~~v~~~r~~~~~~~vgIC 832 (879)
T PRK09279 753 TADEIAEEAEFFSFGTNDLTQTTFGFSRDDAGKFLPDYLEKGILEEDPFESLDQEGVGELVEIAVERGRATRPDLKLGIC 832 (879)
T ss_pred hHHHHHHhCCEEEEcccHHHHHHhccCccchhhhHHHHHhcCcccCCcchhcChHHHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 9999999999999998876421 1 11 2466777889999998 79999998
Q ss_pred hhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 371 SQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 371 Tq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
.++= ..|.-. .-.+..|.|-+-.|
T Consensus 833 GE~g------gdp~~i-----~~l~~lGld~vS~s 856 (879)
T PRK09279 833 GEHG------GDPASI-----EFCHKVGLDYVSCS 856 (879)
T ss_pred CCCc------cCHHHH-----HHHHHCCCCEEEEC
Confidence 7653 344443 56778899998887
No 49
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=94.34 E-value=0.63 Score=52.50 Aligned_cols=122 Identities=18% Similarity=0.278 Sum_probs=78.7
Q ss_pred CccCHHHHHHHHHcCCCEEEecCc--CChh---hHHHHHHHHhccCCCCceEEee-ecCHHHHhcHHHHHhcCCEEEEe-
Q 008172 264 SKKDWDDIEFGIAEGVDFIAMSFV--CDAD---SVRHLKKYVSGKSSRSIKVLAK-IENLESLQKFEEIVEASDGIMVA- 336 (575)
Q Consensus 264 sekD~~di~~al~~gvd~I~~SfV--~sa~---dv~~ir~~l~~~~~~~i~IIaK-IEt~~av~nldeI~~~sDgImIa- 336 (575)
.+.+.+.++..++.|+|+|++--- .+.. .++++|+ .. .+..||++ |-|.+...++.+ .=+|+|.++
T Consensus 246 ~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~----~~-p~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg~ 318 (505)
T PLN02274 246 RESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKK----TY-PELDVIGGNVVTMYQAQNLIQ--AGVDGLRVGM 318 (505)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHH----hC-CCCcEEEecCCCHHHHHHHHH--cCcCEEEECC
Confidence 456678888889999999987542 2222 3444443 22 35778775 999888766554 349999986
Q ss_pred -CCCCCC-----CCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 337 -RGDLGV-----DIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 337 -RGDLg~-----e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
+|=-.. ..+.+.+..+ ..+.+.+++.+.|||...-+- --.|+..|+..|||++|+.
T Consensus 319 g~G~~~~t~~~~~~g~~~~~~i-~~~~~~~~~~~vpVIadGGI~------------~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 319 GSGSICTTQEVCAVGRGQATAV-YKVASIAAQHGVPVIADGGIS------------NSGHIVKALTLGASTVMMG 380 (505)
T ss_pred CCCccccCccccccCCCcccHH-HHHHHHHHhcCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEc
Confidence 441111 1122222222 235566777899999865543 2368899999999999995
No 50
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=94.33 E-value=0.47 Score=52.68 Aligned_cols=127 Identities=22% Similarity=0.259 Sum_probs=80.4
Q ss_pred CCccCHHHHHHHHHcCCCEEEecCcC-ChhhHHHHHHHHhccCCCCceEEe-eecCHHHHhcHHHHHhcCCEEEEe--CC
Q 008172 263 LSKKDWDDIEFGIAEGVDFIAMSFVC-DADSVRHLKKYVSGKSSRSIKVLA-KIENLESLQKFEEIVEASDGIMVA--RG 338 (575)
Q Consensus 263 lsekD~~di~~al~~gvd~I~~SfV~-sa~dv~~ir~~l~~~~~~~i~IIa-KIEt~~av~nldeI~~~sDgImIa--RG 338 (575)
+.+.+.+..+..++.|+|+|.+-.-+ ....+.+.-+.+++.. .++.|++ -+-|.++..++-+ .=+|+|-|+ +|
T Consensus 221 ~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~-~~~~vi~G~v~t~~~a~~l~~--aGad~i~vg~g~G 297 (450)
T TIGR01302 221 TREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTY-PDLDIIAGNVATAEQAKALID--AGADGLRVGIGPG 297 (450)
T ss_pred CchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhC-CCCCEEEEeCCCHHHHHHHHH--hCCCEEEECCCCC
Confidence 35567788888899999999876532 1122333333333332 3566666 7888877765544 338999876 55
Q ss_pred CCCC-----CCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 339 DLGV-----DIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 339 DLg~-----e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
--.. ..+.+.+ .+...+.+.|++.+.|+|...-+- --.|++.|+..|||++|+.
T Consensus 298 ~~~~t~~~~~~g~p~~-~~i~~~~~~~~~~~vpviadGGi~------------~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 298 SICTTRIVAGVGVPQI-TAVYDVAEYAAQSGIPVIADGGIR------------YSGDIVKALAAGADAVMLG 356 (450)
T ss_pred cCCccceecCCCccHH-HHHHHHHHHHhhcCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 2111 1222322 344566777888999999754433 2368899999999999995
No 51
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=94.23 E-value=0.58 Score=49.99 Aligned_cols=126 Identities=18% Similarity=0.123 Sum_probs=78.0
Q ss_pred CccCHHHHHHHHHcC--CCEEEec--CcCChhhHHHHHHHHhccCCCCceEEee-ecCHHHHhcHHHHHhcCCEEEEeCC
Q 008172 264 SKKDWDDIEFGIAEG--VDFIAMS--FVCDADSVRHLKKYVSGKSSRSIKVLAK-IENLESLQKFEEIVEASDGIMVARG 338 (575)
Q Consensus 264 sekD~~di~~al~~g--vd~I~~S--fV~sa~dv~~ir~~l~~~~~~~i~IIaK-IEt~~av~nldeI~~~sDgImIaRG 338 (575)
++.|.+-++..++.+ +|+|.+- +=.|...+..++. +++.- .+..||+= |-|+++.+++-+ .=+|+|.|+=|
T Consensus 105 ~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~-ir~~~-p~~~viaGNV~T~e~a~~Li~--aGAD~ikVgiG 180 (343)
T TIGR01305 105 SDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKL-VREAF-PEHTIMAGNVVTGEMVEELIL--SGADIVKVGIG 180 (343)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHH-HHhhC-CCCeEEEecccCHHHHHHHHH--cCCCEEEEccc
Confidence 456777778778874 9998763 3333333333333 33332 45778887 999998875543 44999998733
Q ss_pred CCCCCCC--CCChHHHHH----HHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 339 DLGVDIP--LEQIPTVQE----IIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 339 DLg~e~~--~e~v~~~Qk----~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
-=++... ...++..|- .+.++++..+.|+|.-.-+= .-.||+.|+..|||++|+.
T Consensus 181 pGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr------------~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 181 PGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCT------------CPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred CCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcC------------chhHHHHHHHcCCCEEEEC
Confidence 2222222 122332233 44455556688899743322 2489999999999999996
No 52
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=93.61 E-value=0.31 Score=54.47 Aligned_cols=94 Identities=14% Similarity=0.235 Sum_probs=79.3
Q ss_pred HcCCCEEEecCcCChhhHHHHHHHHhccC-------------CCCceEEeeecCHHHHhcHHHHHhc----------CCE
Q 008172 276 AEGVDFIAMSFVCDADSVRHLKKYVSGKS-------------SRSIKVLAKIENLESLQKFEEIVEA----------SDG 332 (575)
Q Consensus 276 ~~gvd~I~~SfV~sa~dv~~ir~~l~~~~-------------~~~i~IIaKIEt~~av~nldeI~~~----------sDg 332 (575)
...+-.+++||.++++|+.++..++++.+ ...+.||.=+||.+.+.|.++|++. .=-
T Consensus 119 ~~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~~~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~~~~~qe 198 (494)
T PRK13655 119 TQPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIGEFEPKEIEVIPLFEDADALLNADEILEEYLKAKKPHGKYLR 198 (494)
T ss_pred chhhceEEecCCCCHHHHHHHHHHHHHHhHhhccccccCCCCcCCcceECCcCCHHHHHhHHHHHHHHHhchhhcCCeeE
Confidence 45667799999999999999877765443 2257999999999999999999976 136
Q ss_pred EEEeCCCCCCCCCC----CChHHHHHHHHHHHHHcCCCEEE
Q 008172 333 IMVARGDLGVDIPL----EQIPTVQEIIIHVCRQLNKPVIV 369 (575)
Q Consensus 333 ImIaRGDLg~e~~~----e~v~~~Qk~Ii~~c~~~gKPviv 369 (575)
||+|+.|=+.+.|. =.+..+|.++.+.|+++|.++..
T Consensus 199 VmlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~ 239 (494)
T PRK13655 199 VFLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYP 239 (494)
T ss_pred EEEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 99999999999986 46788999999999999998875
No 53
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=93.51 E-value=1.4 Score=46.49 Aligned_cols=114 Identities=16% Similarity=0.200 Sum_probs=72.8
Q ss_pred CHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCCC
Q 008172 267 DWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARGDLGVDIP 345 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGDLg~e~~ 345 (575)
..+.++..++.++++|.++|-...+.++++++ .| +++++.+=+.+- .....+. +|+|.+---+-|-..+
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~----~g---~~v~~~v~s~~~---a~~a~~~GaD~Ivv~g~eagGh~g 145 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAGNPGKYIPRLKE----NG---VKVIPVVASVAL---AKRMEKAGADAVIAEGMESGGHIG 145 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcHHHHHHHHH----cC---CEEEEEcCCHHH---HHHHHHcCCCEEEEECcccCCCCC
Confidence 45667888999999999998655444444443 33 688888866543 3333334 8999983324444443
Q ss_pred CCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 346 LEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 346 ~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
...-...-+++. ...+.|||.+.-+- .-.|++.+...|+|+|++.
T Consensus 146 ~~~~~~ll~~v~---~~~~iPviaaGGI~------------~~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 146 ELTTMALVPQVV---DAVSIPVIAAGGIA------------DGRGMAAAFALGAEAVQMG 190 (307)
T ss_pred CCcHHHHHHHHH---HHhCCCEEEECCCC------------CHHHHHHHHHcCCCEeecc
Confidence 222233333343 34479999986554 3456788888999999986
No 54
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.36 E-value=1.2 Score=49.00 Aligned_cols=125 Identities=19% Similarity=0.248 Sum_probs=78.0
Q ss_pred CccCHHHHHHHHHcCCCEEE--ecCcCChhhHHHHHHHHhccCCCCceEEe-eecCHHHHhcHHHHHhcCCEEEEeCCCC
Q 008172 264 SKKDWDDIEFGIAEGVDFIA--MSFVCDADSVRHLKKYVSGKSSRSIKVLA-KIENLESLQKFEEIVEASDGIMVARGDL 340 (575)
Q Consensus 264 sekD~~di~~al~~gvd~I~--~SfV~sa~dv~~ir~~l~~~~~~~i~IIa-KIEt~~av~nldeI~~~sDgImIaRGDL 340 (575)
++.+.+.++..++.|+|+|+ .+.=. .+.+.++-+.+++.. .+..+|+ -|-|.++..++.+. =+|+|.+|=|-=
T Consensus 151 ~~~~~~~v~~lv~aGvDvI~iD~a~g~-~~~~~~~v~~ik~~~-p~~~vi~g~V~T~e~a~~l~~a--GaD~I~vG~g~G 226 (404)
T PRK06843 151 DIDTIERVEELVKAHVDILVIDSAHGH-STRIIELVKKIKTKY-PNLDLIAGNIVTKEAALDLISV--GADCLKVGIGPG 226 (404)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCC-ChhHHHHHHHHHhhC-CCCcEEEEecCCHHHHHHHHHc--CCCEEEECCCCC
Confidence 34466778888999999999 44422 344545444455443 3455544 78888877666542 499999864331
Q ss_pred CC-------CCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 341 GV-------DIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 341 g~-------e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
++ ..+.+.+. +-..+.+.+++.+.|||....+- .-.|++.|+..|||+||+.
T Consensus 227 s~c~tr~~~g~g~p~lt-ai~~v~~~~~~~~vpVIAdGGI~------------~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 227 SICTTRIVAGVGVPQIT-AICDVYEVCKNTNICIIADGGIR------------FSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred cCCcceeecCCCCChHH-HHHHHHHHHhhcCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEc
Confidence 11 11222222 11233455667799999754332 2368899999999999994
No 55
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=93.13 E-value=1.7 Score=42.18 Aligned_cols=134 Identities=15% Similarity=0.101 Sum_probs=78.1
Q ss_pred HHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCC
Q 008172 269 DDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQ 348 (575)
Q Consensus 269 ~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~ 348 (575)
+.++.+.+.|+|+|.++.-.+.+ ..+..+.+...+ +.+..-+......+.+.++...+|.+.+..-+-|..= +.
T Consensus 71 ~~~~~~~~~g~dgv~vh~~~~~~-~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg--~~ 144 (211)
T cd00429 71 RYIEAFAKAGADIITFHAEATDH-LHRTIQLIKELG---MKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGG--QK 144 (211)
T ss_pred HHHHHHHHcCCCEEEECccchhh-HHHHHHHHHHCC---CeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCC--cc
Confidence 35777889999999888776633 334444444443 3444444322345667777777899988654333211 11
Q ss_pred hH-HHHHHHHHHHHHc-----CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHH
Q 008172 349 IP-TVQEIIIHVCRQL-----NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVL 421 (575)
Q Consensus 349 v~-~~Qk~Ii~~c~~~-----gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m 421 (575)
.+ ...+.+-+.+... ..|++++.-+ + . .++..++..|+|++...+.-..-..|.++++.+
T Consensus 145 ~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI----------~--~-env~~~~~~gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 145 FIPEVLEKIRKLRELIPENNLNLLIEVDGGI----------N--L-ETIPLLAEAGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCeEEEEECCC----------C--H-HHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHh
Confidence 11 2222222222222 4788775321 1 1 446778889999999987766667787776643
No 56
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.03 E-value=1.3 Score=49.75 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=84.5
Q ss_pred CCCCccCHHHHHHHHHcCCCEEEecCcC-ChhhHHHHHHHHhccCCCCceEEe-eecCHHHHhcHHHHHhcCCEEEEeCC
Q 008172 261 PTLSKKDWDDIEFGIAEGVDFIAMSFVC-DADSVRHLKKYVSGKSSRSIKVLA-KIENLESLQKFEEIVEASDGIMVARG 338 (575)
Q Consensus 261 p~lsekD~~di~~al~~gvd~I~~SfV~-sa~dv~~ir~~l~~~~~~~i~IIa-KIEt~~av~nldeI~~~sDgImIaRG 338 (575)
-.+++++.+.+...++.|+|.|++---. ....+.++.+.+++.. .++.||| -+-|.++..++.+ .=+|+|=||=|
T Consensus 222 v~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~-p~~~v~agnv~t~~~a~~l~~--aGad~v~vgig 298 (479)
T PRK07807 222 VGINGDVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALD-PGVPIVAGNVVTAEGTRDLVE--AGADIVKVGVG 298 (479)
T ss_pred hccChhHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHC-CCCeEEeeccCCHHHHHHHHH--cCCCEEEECcc
Confidence 3456677788888889999998864221 1234444444455543 5688999 9999999888766 34999986533
Q ss_pred C--CCCCCCC--CChHHH--HHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 339 D--LGVDIPL--EQIPTV--QEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 339 D--Lg~e~~~--e~v~~~--Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
= ...--.. ..+|.+ -.++.+.|++.++|||....+= +. .|++.|+..|+|++|+.
T Consensus 299 ~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~---------~~---~~~~~al~~ga~~v~~g 359 (479)
T PRK07807 299 PGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVR---------HP---RDVALALAAGASNVMIG 359 (479)
T ss_pred CCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCC---------CH---HHHHHHHHcCCCeeecc
Confidence 2 1111111 112322 2355566667899999754332 22 68899999999999995
No 57
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=92.93 E-value=0.78 Score=48.85 Aligned_cols=127 Identities=16% Similarity=0.242 Sum_probs=76.9
Q ss_pred CCCccCHHHHHHHHHcC--CCEEEecC--cCChhhHHHHHHHHhccCCCCceEEee-ecCHHHHhcHHHHHhcCCEEEEe
Q 008172 262 TLSKKDWDDIEFGIAEG--VDFIAMSF--VCDADSVRHLKKYVSGKSSRSIKVLAK-IENLESLQKFEEIVEASDGIMVA 336 (575)
Q Consensus 262 ~lsekD~~di~~al~~g--vd~I~~Sf--V~sa~dv~~ir~~l~~~~~~~i~IIaK-IEt~~av~nldeI~~~sDgImIa 336 (575)
..+++|.+.+...++.| +|+|.+-- =.|..-+..++. +++.- +.+.+|++ +-+.+....+.+ .=+|+|.|+
T Consensus 90 G~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~-i~~~~-p~~~vi~GnV~t~e~a~~l~~--aGad~I~V~ 165 (321)
T TIGR01306 90 GVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKH-IKTHL-PDSFVIAGNVGTPEAVRELEN--AGADATKVG 165 (321)
T ss_pred CCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHH-HHHhC-CCCEEEEecCCCHHHHHHHHH--cCcCEEEEC
Confidence 34678888888889988 79987643 223333333333 32221 45678888 988887766554 238999987
Q ss_pred CCCCCC-----CCCCCChHHHHHHHHHHHH-HcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 337 RGDLGV-----DIPLEQIPTVQEIIIHVCR-QLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 337 RGDLg~-----e~~~e~v~~~Qk~Ii~~c~-~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
=|-=++ +.+. .++..|-..+..|+ ...+|||.-.-+- --.|++.|+..|||++|+.
T Consensus 166 ~G~G~~~~tr~~~g~-g~~~~~l~ai~ev~~a~~~pVIadGGIr------------~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 166 IGPGKVCITKIKTGF-GTGGWQLAALRWCAKAARKPIIADGGIR------------THGDIAKSIRFGASMVMIG 227 (321)
T ss_pred CCCCccccceeeecc-CCCchHHHHHHHHHHhcCCeEEEECCcC------------cHHHHHHHHHcCCCEEeec
Confidence 332111 1111 11222323344444 4478888644332 2379999999999999996
No 58
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=92.58 E-value=4.2 Score=40.38 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=68.8
Q ss_pred CHHHHHHHHHcCCCEEEec--CcCCh--hhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCCCC
Q 008172 267 DWDDIEFGIAEGVDFIAMS--FVCDA--DSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARGDLG 341 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~S--fV~sa--~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGDLg 341 (575)
+.+.++.+.+.|+|+|.+- +..++ +++.++.+.+++. ..+.+++-.-+.+- +....+. +|.+.+..+++.
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~--~~i~vi~~v~t~ee---~~~a~~~G~d~i~~~~~g~t 151 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY--PGQLLMADCSTLEE---GLAAQKLGFDFIGTTLSGYT 151 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC--CCCeEEEeCCCHHH---HHHHHHcCCCEEEcCCceee
Confidence 4567889999999987653 33333 6777777777652 24667765544332 2222222 798887555443
Q ss_pred CCC--CCCChHHHHHHHHHHHHH-cCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEecc
Q 008172 342 VDI--PLEQIPTVQEIIIHVCRQ-LNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSG 406 (575)
Q Consensus 342 ~e~--~~e~v~~~Qk~Ii~~c~~-~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ 406 (575)
..- ....-.. .++..++ .++|++.+..+ -|. .|+..+...|+|++++..
T Consensus 152 ~~~~~~~~~~~~----~i~~i~~~~~iPvia~GGI---------~t~---~~~~~~l~~GadgV~iGs 203 (221)
T PRK01130 152 EETKKPEEPDFA----LLKELLKAVGCPVIAEGRI---------NTP---EQAKKALELGAHAVVVGG 203 (221)
T ss_pred cCCCCCCCcCHH----HHHHHHHhCCCCEEEECCC---------CCH---HHHHHHHHCCCCEEEEch
Confidence 211 1111122 2333332 38999986432 222 455667789999999983
No 59
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.57 E-value=2 Score=43.71 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=76.7
Q ss_pred HHHHHHHHcCCCEEEecC--cCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEE---eCCCCCCC
Q 008172 269 DDIEFGIAEGVDFIAMSF--VCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMV---ARGDLGVD 343 (575)
Q Consensus 269 ~di~~al~~gvd~I~~Sf--V~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImI---aRGDLg~e 343 (575)
+.++.+.+.|+|+|.++. +++.++..++.+.+++.| -+..+...=+| -.+.++.+++.+|++++ -+|.. .
T Consensus 92 ~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~G-l~~~~~v~p~T--~~e~l~~~~~~~~~~l~msv~~~~g-~- 166 (244)
T PRK13125 92 NFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKG-LKPVFFTSPKF--PDLLIHRLSKLSPLFIYYGLRPATG-V- 166 (244)
T ss_pred HHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcC-CCEEEEECCCC--CHHHHHHHHHhCCCEEEEEeCCCCC-C-
Confidence 347778899999999985 566788889999998887 33444444444 46788999999999873 33442 2
Q ss_pred CCCCChHHHHHHHHHHHHHc--CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 344 IPLEQIPTVQEIIIHVCRQL--NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 344 ~~~e~v~~~Qk~Ii~~c~~~--gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
+++.-...-++..++. .+|+.+- ...-+.+ ++..+...|+|++...
T Consensus 167 ----~~~~~~~~~i~~lr~~~~~~~i~v~---------gGI~~~e---~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 167 ----PLPVSVERNIKRVRNLVGNKYLVVG---------FGLDSPE---DARDALSAGADGVVVG 214 (244)
T ss_pred ----CchHHHHHHHHHHHHhcCCCCEEEe---------CCcCCHH---HHHHHHHcCCCEEEEC
Confidence 2333444455555554 4676653 2233333 5566678999998874
No 60
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=92.45 E-value=2.3 Score=45.58 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=77.8
Q ss_pred CccCHHHHHHHHH--cCCCEEEe--cCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCC
Q 008172 264 SKKDWDDIEFGIA--EGVDFIAM--SFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGD 339 (575)
Q Consensus 264 sekD~~di~~al~--~gvd~I~~--SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGD 339 (575)
++.|.+-++..++ .|+|+|.+ ++=.|...+..++. +++.-.+...|.--+-|+++.++|-+ +=+|++-||=|-
T Consensus 106 ~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~-ik~~~P~~~vIaGNV~T~e~a~~Li~--aGAD~vKVGIGp 182 (346)
T PRK05096 106 SDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAK-AREAWPDKTICAGNVVTGEMVEELIL--SGADIVKVGIGP 182 (346)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHH-HHHhCCCCcEEEecccCHHHHHHHHH--cCCCEEEEcccC
Confidence 4566777777777 49999875 33333333444433 43332233455667999999877543 449999976442
Q ss_pred CCCCCCC----CChHHHH--HHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 340 LGVDIPL----EQIPTVQ--EIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 340 Lg~e~~~----e~v~~~Q--k~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
=++=..- --+|.+. .+..+.+++.|+|+|--.-+= --.|++.|+..|||+|||.
T Consensus 183 GSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~------------~sGDI~KAlaaGAd~VMlG 242 (346)
T PRK05096 183 GSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCT------------VPGDVAKAFGGGADFVMLG 242 (346)
T ss_pred CccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCcc------------cccHHHHHHHcCCCEEEeC
Confidence 1111111 1123222 356677788899999633221 2479999999999999995
No 61
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=92.07 E-value=2.2 Score=45.60 Aligned_cols=127 Identities=20% Similarity=0.305 Sum_probs=76.3
Q ss_pred CccCHHHHHHHHHcCC--CEEEecCc-CChhhHHHHHHHHhccCCCCceEEee-ecCHHHHhcHHHHHhcCCEEEEeCCC
Q 008172 264 SKKDWDDIEFGIAEGV--DFIAMSFV-CDADSVRHLKKYVSGKSSRSIKVLAK-IENLESLQKFEEIVEASDGIMVARGD 339 (575)
Q Consensus 264 sekD~~di~~al~~gv--d~I~~SfV-~sa~dv~~ir~~l~~~~~~~i~IIaK-IEt~~av~nldeI~~~sDgImIaRGD 339 (575)
++++.+-+...++.|+ |.|++--- -..+.+.++-+.+++.. +++.||++ +-|.+...++.+ .=+|++.++=|.
T Consensus 95 ~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~-p~~~vi~g~V~t~e~a~~l~~--aGad~i~vg~~~ 171 (326)
T PRK05458 95 KDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHL-PETFVIAGNVGTPEAVRELEN--AGADATKVGIGP 171 (326)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhC-CCCeEEEEecCCHHHHHHHHH--cCcCEEEECCCC
Confidence 4566777777788855 99988111 12233444444444443 45789997 999887766654 238999987222
Q ss_pred CCC--C---CCCCChHHHHHHHHHHHHH-cCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEecc
Q 008172 340 LGV--D---IPLEQIPTVQEIIIHVCRQ-LNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSG 406 (575)
Q Consensus 340 Lg~--e---~~~e~v~~~Qk~Ii~~c~~-~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ 406 (575)
=.. + .+ -..|.+|-..+..|.+ ...|+|....+- + -.|++.|+..|||++|+.+
T Consensus 172 G~~~~t~~~~g-~~~~~w~l~ai~~~~~~~~ipVIAdGGI~---------~---~~Di~KaLa~GA~aV~vG~ 231 (326)
T PRK05458 172 GKVCITKIKTG-FGTGGWQLAALRWCAKAARKPIIADGGIR---------T---HGDIAKSIRFGATMVMIGS 231 (326)
T ss_pred CcccccccccC-CCCCccHHHHHHHHHHHcCCCEEEeCCCC---------C---HHHHHHHHHhCCCEEEech
Confidence 111 0 01 1233334333444443 478988654333 2 3588999999999999973
No 62
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=92.06 E-value=3.5 Score=41.04 Aligned_cols=115 Identities=22% Similarity=0.277 Sum_probs=69.1
Q ss_pred CHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCCC
Q 008172 267 DWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARGDLGVDIP 345 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGDLg~e~~ 345 (575)
..+.++.+.+.|+|+|.++.-.+.+.++++++ . .+.++.++.+.+ .+.++.+. +|+|.+....-+-...
T Consensus 69 ~~~~~~~~~~~g~d~v~l~~~~~~~~~~~~~~----~---~i~~i~~v~~~~---~~~~~~~~gad~i~~~~~~~~G~~~ 138 (236)
T cd04730 69 FEALLEVALEEGVPVVSFSFGPPAEVVERLKA----A---GIKVIPTVTSVE---EARKAEAAGADALVAQGAEAGGHRG 138 (236)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHH----c---CCEEEEeCCCHH---HHHHHHHcCCCEEEEeCcCCCCCCC
Confidence 45667788999999999998755444444332 2 367888887653 34444444 7998774322221111
Q ss_pred CCChHHHHHHHHHHHHH-cCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 346 LEQIPTVQEIIIHVCRQ-LNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 346 ~e~v~~~Qk~Ii~~c~~-~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
... ......++.+++ .++|++.+--+ -+ ..|+..++..|+|+|+++
T Consensus 139 ~~~--~~~~~~i~~i~~~~~~Pvi~~GGI---------~~---~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 139 TFD--IGTFALVPEVRDAVDIPVIAAGGI---------AD---GRGIAAALALGADGVQMG 185 (236)
T ss_pred ccc--cCHHHHHHHHHHHhCCCEEEECCC---------CC---HHHHHHHHHcCCcEEEEc
Confidence 111 112334444443 37999986432 22 356677788999999997
No 63
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.63 E-value=1.4 Score=49.72 Aligned_cols=121 Identities=17% Similarity=0.152 Sum_probs=68.6
Q ss_pred CHHHHHHHHHcCCCEEEecCcCC-----hhhHHHHHHHHhccCCCCceEEe-eecCHHHHhcHHHHHhcCCEEEEeCCCC
Q 008172 267 DWDDIEFGIAEGVDFIAMSFVCD-----ADSVRHLKKYVSGKSSRSIKVLA-KIENLESLQKFEEIVEASDGIMVARGDL 340 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~SfV~s-----a~dv~~ir~~l~~~~~~~i~IIa-KIEt~~av~nldeI~~~sDgImIaRGDL 340 (575)
+.+.++..++.|+|+|.+.-..- .+.++++|+.. + ..+.|++ -|.++++.+.+-+ +=+|+|.|+.|-=
T Consensus 243 ~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~---~-~~~~V~aGnV~t~e~a~~li~--aGAd~I~vg~g~G 316 (502)
T PRK07107 243 YAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKY---G-DSVKVGAGNVVDREGFRYLAE--AGADFVKVGIGGG 316 (502)
T ss_pred HHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhC---C-CCceEEeccccCHHHHHHHHH--cCCCEEEECCCCC
Confidence 35666777899999999871111 11233333322 2 2355555 6888887765543 3489999965532
Q ss_pred CCCCCC--CChHHHHH----HHHHHHHH----cC--CCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 341 GVDIPL--EQIPTVQE----IIIHVCRQ----LN--KPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 341 g~e~~~--e~v~~~Qk----~Ii~~c~~----~g--KPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
++-..- ..+...|- .+.+++++ .| +|+|.-.- .. --.|++.|+..|||++|+.
T Consensus 317 s~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgG---------ir---~~gdi~KAla~GA~~vm~G 381 (502)
T PRK07107 317 SICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGG---------IV---YDYHMTLALAMGADFIMLG 381 (502)
T ss_pred cCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCC---------CC---chhHHHHHHHcCCCeeeeC
Confidence 111110 11222222 23333332 36 89886332 21 2479999999999999995
No 64
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=90.94 E-value=8.7 Score=37.50 Aligned_cols=136 Identities=13% Similarity=0.166 Sum_probs=78.6
Q ss_pred HHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCH-HHHhcHHHHHh-cCCEEEEeCCCCCCCCCCC
Q 008172 270 DIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENL-ESLQKFEEIVE-ASDGIMVARGDLGVDIPLE 347 (575)
Q Consensus 270 di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~-~av~nldeI~~-~sDgImIaRGDLg~e~~~e 347 (575)
.++.+.+.|+|+|.+++......+.++.+.+++.| +.+++-+-++ +-.+.+....+ -+|.+-+.+|-=+...+..
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g---~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~ 144 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHG---KEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAKGQN 144 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcC---CEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccCCCC
Confidence 67888999999999888776666778888887665 4565543221 22334444455 3899988775333333322
Q ss_pred ChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHH
Q 008172 348 QIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMA 424 (575)
Q Consensus 348 ~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I 424 (575)
.+. ++-+..+....+.+.++ ..-+.. .+..+...|+|++.+.+.-..-+-|.++++.++++
T Consensus 145 ~~~----~i~~l~~~~~~~~i~v~---------GGI~~~---n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 145 PFE----DLQTILKLVKEARVAVA---------GGINLD---TIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred CHH----HHHHHHHhcCCCcEEEE---------CCcCHH---HHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 222 22222222233444322 122333 34456678999999865533335577777766543
No 65
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=90.94 E-value=7.7 Score=40.26 Aligned_cols=125 Identities=20% Similarity=0.253 Sum_probs=71.6
Q ss_pred HHHHHHHHcCCCEEEec------------CcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-----CC
Q 008172 269 DDIEFGIAEGVDFIAMS------------FVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-----SD 331 (575)
Q Consensus 269 ~di~~al~~gvd~I~~S------------fV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-----sD 331 (575)
+..+.+.+.|+|+|=+. +-.+++.+.++-+.+++.- ++.|++||= + ..+++.++++. +|
T Consensus 106 ~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~--~~Pv~vKl~-~-~~~~~~~~a~~~~~~G~d 181 (296)
T cd04740 106 EVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT--DVPVIVKLT-P-NVTDIVEIARAAEEAGAD 181 (296)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc--CCCEEEEeC-C-CchhHHHHHHHHHHcCCC
Confidence 33345567799998663 3456666666666665442 478999982 2 12344454442 68
Q ss_pred EEEEe-----CC-CCC-----------CCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHH
Q 008172 332 GIMVA-----RG-DLG-----------VDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEA 394 (575)
Q Consensus 332 gImIa-----RG-DLg-----------~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~na 394 (575)
+|-+- +. |+. .-.|...-+...+.+-+.....+.|+|....+- ...|+..+
T Consensus 182 ~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~------------~~~da~~~ 249 (296)
T cd04740 182 GLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIA------------SGEDALEF 249 (296)
T ss_pred EEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCC------------CHHHHHHH
Confidence 88652 11 221 001112223333334344444589999865443 23567888
Q ss_pred HHcccceEEeccCcC
Q 008172 395 VRQYADALMLSGESA 409 (575)
Q Consensus 395 v~~G~D~vmLs~ETa 409 (575)
+..|+|+||+..---
T Consensus 250 l~~GAd~V~igra~l 264 (296)
T cd04740 250 LMAGASAVQVGTANF 264 (296)
T ss_pred HHcCCCEEEEchhhh
Confidence 899999999984433
No 66
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=90.88 E-value=8.7 Score=37.22 Aligned_cols=129 Identities=15% Similarity=0.082 Sum_probs=76.2
Q ss_pred HHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEE---eeecCHHHHhcHHHHHh-cCCEEEEeCCCCCCCC
Q 008172 269 DDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVL---AKIENLESLQKFEEIVE-ASDGIMVARGDLGVDI 344 (575)
Q Consensus 269 ~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~II---aKIEt~~av~nldeI~~-~sDgImIaRGDLg~e~ 344 (575)
..++.+.+.|+|+|.++.-...+...++.+++++.| ++++ ..-.|++-+. . .++ -+|.+.+.++--+...
T Consensus 68 ~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g---~~~~v~~~~~~t~~e~~--~-~~~~~~d~v~~~~~~~~~~~ 141 (202)
T cd04726 68 LEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYG---KEVQVDLIGVEDPEKRA--K-LLKLGVDIVILHRGIDAQAA 141 (202)
T ss_pred HHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcC---CeEEEEEeCCCCHHHHH--H-HHHCCCCEEEEcCccccccc
Confidence 456778999999999988776667788888887665 3343 4555554433 2 445 4899998664222222
Q ss_pred CCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHH
Q 008172 345 PLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVS 419 (575)
Q Consensus 345 ~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~ 419 (575)
+.+.....-+++ ......|+.+.-- -+ ..++..+...|+|++.+.+--..-..|.++++
T Consensus 142 ~~~~~~~~i~~~---~~~~~~~i~~~GG----------I~---~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~ 200 (202)
T cd04726 142 GGWWPEDDLKKV---KKLLGVKVAVAGG----------IT---PDTLPEFKKAGADIVIVGRAITGAADPAEAAR 200 (202)
T ss_pred CCCCCHHHHHHH---HhhcCCCEEEECC----------cC---HHHHHHHHhcCCCEEEEeehhcCCCCHHHHHh
Confidence 222222222222 2225678876421 12 13567788899999998744332334555543
No 67
>PRK08227 autoinducer 2 aldolase; Validated
Probab=90.43 E-value=4.4 Score=42.11 Aligned_cols=172 Identities=17% Similarity=0.161 Sum_probs=93.2
Q ss_pred HHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCC-CChhhHhhHHHHHHcccce
Q 008172 323 FEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPT-PTRAEVADVSEAVRQYADA 401 (575)
Q Consensus 323 ldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~-PtrAEv~Dv~nav~~G~D~ 401 (575)
+..++.-+|+++.-+|=+....+ ...++|.|+-.. -|-...|. +...=+++|-.|+..|+|+
T Consensus 48 ~~~i~~~~da~~~~~G~~~~~~~---------------~~~~~~lil~ls--~~t~~~~~~~~~~l~~sVeeAvrlGAdA 110 (264)
T PRK08227 48 IAPLFPYADVLMCTRGILRSVVP---------------PATNKPVVLRAS--GGNSILKELSNEAVAVDMEDAVRLNACA 110 (264)
T ss_pred HHHHhhcCCEEEeChhHHHhccc---------------ccCCCcEEEEEc--CCCCCCCCCCcccceecHHHHHHCCCCE
Confidence 55666568999997664432111 123577776422 11111222 3455578899999999999
Q ss_pred EEeccCcCCCCCHHHHHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcCCcEEEEEcCC
Q 008172 402 LMLSGESAIGPFGQKAVSVLQMASSRMELWSREENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLGVDAIFVYTKH 481 (575)
Q Consensus 402 vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~AkaIVVfT~S 481 (575)
|..+-=-. +.+=-+.++.+.++++++++|=.-. +...+. ..... +..+ +...|+++|.+++|+ ||=...+
T Consensus 111 V~~~v~~G-s~~E~~~l~~l~~v~~ea~~~G~Pl-----la~~pr-G~~~~-~~~~-~ia~aaRiaaELGAD-iVK~~y~ 180 (264)
T PRK08227 111 VAAQVFIG-SEYEHQSIKNIIQLVDAGLRYGMPV-----MAVTAV-GKDMV-RDAR-YFSLATRIAAEMGAQ-IIKTYYV 180 (264)
T ss_pred EEEEEecC-CHHHHHHHHHHHHHHHHHHHhCCcE-----EEEecC-CCCcC-chHH-HHHHHHHHHHHHcCC-EEecCCC
Confidence 98862211 2333566666777777887762110 000111 11111 2334 666777999999999 5555556
Q ss_pred hhHHHHHhccCCCCcEEEE-c---CcHHHHHHh--cccCCcEEEEec
Q 008172 482 GHMASLLSRNRPNPPIFAF-T---NDDSTRMAL--NLQWGVIPVLVN 522 (575)
Q Consensus 482 G~TAr~VSr~RP~~PIiAv-T---~~~~~aR~L--~L~~GV~Pvl~~ 522 (575)
|.+-+.+-.--| +||+.- - +++.+.+.+ .+.-|-.-+.+.
T Consensus 181 ~~~f~~vv~a~~-vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~G 226 (264)
T PRK08227 181 EEGFERITAGCP-VPIVIAGGKKLPERDALEMCYQAIDEGASGVDMG 226 (264)
T ss_pred HHHHHHHHHcCC-CcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeec
Confidence 744444444444 566643 2 233343333 244565555553
No 68
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=89.93 E-value=12 Score=38.74 Aligned_cols=149 Identities=12% Similarity=0.198 Sum_probs=97.6
Q ss_pred CCCccCHHHHHHHH-HcCCCEEEecCcCChhh----------HHHHHHHHhccCCCCceEEeeecCHHH-HhcHHHHHhc
Q 008172 262 TLSKKDWDDIEFGI-AEGVDFIAMSFVCDADS----------VRHLKKYVSGKSSRSIKVLAKIENLES-LQKFEEIVEA 329 (575)
Q Consensus 262 ~lsekD~~di~~al-~~gvd~I~~SfV~sa~d----------v~~ir~~l~~~~~~~i~IIaKIEt~~a-v~nldeI~~~ 329 (575)
.+|..++..|...+ +.|+|+|=+.|....++ .+.++.+..... ++.++.+..-.... ++.++...+.
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~~ 94 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASGS 94 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhcC
Confidence 45777777776666 58999998888765331 455555544321 25677777655431 2333333333
Q ss_pred -CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHcccceEEeccC
Q 008172 330 -SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQYADALMLSGE 407 (575)
Q Consensus 330 -sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~G~D~vmLs~E 407 (575)
.|.|.|+ ++...+ ...+.+++.++++|..|.+. +....+-+..++.+++. +...|+|.+.|. +
T Consensus 95 gv~~iri~-------~~~~~~-~~~~~~i~~ak~~G~~v~~~------~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~-D 159 (266)
T cd07944 95 VVDMIRVA-------FHKHEF-DEALPLIKAIKEKGYEVFFN------LMAISGYSDEELLELLELVNEIKPDVFYIV-D 159 (266)
T ss_pred CcCEEEEe-------cccccH-HHHHHHHHHHHHCCCeEEEE------EEeecCCCHHHHHHHHHHHHhCCCCEEEEe-c
Confidence 5887775 343443 44567789999999887764 22223456777777775 455799999998 8
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 008172 408 SAIGPFGQKAVSVLQMASS 426 (575)
Q Consensus 408 Ta~G~yPveaV~~m~~I~~ 426 (575)
|.=..+|.+.-++++.+.+
T Consensus 160 T~G~~~P~~v~~lv~~l~~ 178 (266)
T cd07944 160 SFGSMYPEDIKRIISLLRS 178 (266)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 8888999988887776643
No 69
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=89.83 E-value=1 Score=53.24 Aligned_cols=115 Identities=21% Similarity=0.104 Sum_probs=91.0
Q ss_pred CCEEEecCcCChhhHHHHHHHHh--ccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCC------------C
Q 008172 279 VDFIAMSFVCDADSVRHLKKYVS--GKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVD------------I 344 (575)
Q Consensus 279 vd~I~~SfV~sa~dv~~ir~~l~--~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e------------~ 344 (575)
.-.+++||+++..+..... ... ..+.++.++..+||-+.++-..|||++..|++=++-+||..- .
T Consensus 595 ~~~~mip~~~~~~e~~~~~-~~~~~~~~~~~~~~~~m~e~P~~~~~~~e~~~~~d~~S~gtndltq~tlg~~rd~~~~~~ 673 (740)
T COG0574 595 NVEIMIPFVRTEEEREKVI-ILEEGLKRGKNYKVGQMIELPSAALLADEIAEYFDGFSIGSNDLTQLTLGLDRDSELFDE 673 (740)
T ss_pred CcEEEccccccHHHHHHHH-HHhhhhcccceEEEEEEeecchHHhhhHhHHhhcccceecccccccceeeeecccccccc
Confidence 3458899999999988887 333 111123899999999999999999999999999999998532 2
Q ss_pred CCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 345 PLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 345 ~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
..+.+-.+-+..+..|+..++.++++.|.-+ .|.-| .-++..|.|+|.++
T Consensus 674 ~~~~v~~li~~a~~~~~~~~~~~~icG~~~~------~p~~a-----~~~~e~Gi~~Vs~n 723 (740)
T COG0574 674 RDPAVLKLIIIAIKAADSGGLLVGICGQAPS------DPHGA-----IFLVELGIDSVSLN 723 (740)
T ss_pred ccccHHHHHHHHHhcccccCcEEEEeccCCC------CcHHH-----HHHHHcCCCeEecC
Confidence 2367888888999999999999999988543 24444 45789999999966
No 70
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=89.65 E-value=4.9 Score=41.63 Aligned_cols=121 Identities=15% Similarity=0.154 Sum_probs=79.5
Q ss_pred HHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCC
Q 008172 269 DDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQ 348 (575)
Q Consensus 269 ~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~ 348 (575)
+.++.+.+.|+|+|++|..- .++..++.+.+++.|.+.+.+++= .| -.+.+..|++.++|.+-.=+-.|+-=.-..
T Consensus 110 ~F~~~~~~aGvdgviipDLP-~ee~~~~~~~~~~~gi~~I~lv~P-tT--~~eri~~i~~~a~gFIY~vS~~GvTG~~~~ 185 (263)
T CHL00200 110 KFIKKISQAGVKGLIIPDLP-YEESDYLISVCNLYNIELILLIAP-TS--SKSRIQKIARAAPGCIYLVSTTGVTGLKTE 185 (263)
T ss_pred HHHHHHHHcCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEEECC-CC--CHHHHHHHHHhCCCcEEEEcCCCCCCCCcc
Confidence 45677899999999999985 588889999998877433344332 23 467899999999965543111221111245
Q ss_pred hHHHHHHHHHHHHHc-CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 349 IPTVQEIIIHVCRQL-NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 349 v~~~Qk~Ii~~c~~~-gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
++.-.+..++..+++ ++|+.+-- ..-+++ ++......|+|++...
T Consensus 186 ~~~~~~~~i~~ir~~t~~Pi~vGF---------GI~~~e---~~~~~~~~GADGvVVG 231 (263)
T CHL00200 186 LDKKLKKLIETIKKMTNKPIILGF---------GISTSE---QIKQIKGWNINGIVIG 231 (263)
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEC---------CcCCHH---HHHHHHhcCCCEEEEC
Confidence 555566777777754 88988732 233343 4456667899999874
No 71
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=89.38 E-value=5 Score=42.04 Aligned_cols=119 Identities=18% Similarity=0.212 Sum_probs=74.0
Q ss_pred HHHHcCCCEEEe----cCc-----------CChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-----CCE
Q 008172 273 FGIAEGVDFIAM----SFV-----------CDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-----SDG 332 (575)
Q Consensus 273 ~al~~gvd~I~~----SfV-----------~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-----sDg 332 (575)
...+.|+|+|-+ |.. ++++.+.++.+.+.+. -++.|++||-- .+.++.++++. +||
T Consensus 121 ~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~--~~~Pv~vKl~~--~~~~~~~~a~~~~~~Gadg 196 (299)
T cd02940 121 LVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA--VKIPVIAKLTP--NITDIREIARAAKEGGADG 196 (299)
T ss_pred HHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh--cCCCeEEECCC--CchhHHHHHHHHHHcCCCE
Confidence 334468888765 333 4556666666666543 25789999942 34456666553 799
Q ss_pred EEEe-----CCCC-----------------CCCCCCCChHHHHHHHHHHHHHc--CCCEEEehhhHHhhhcCCCCChhhH
Q 008172 333 IMVA-----RGDL-----------------GVDIPLEQIPTVQEIIIHVCRQL--NKPVIVASQLLESMVEYPTPTRAEV 388 (575)
Q Consensus 333 ImIa-----RGDL-----------------g~e~~~e~v~~~Qk~Ii~~c~~~--gKPvivaTq~LeSM~~~p~PtrAEv 388 (575)
|.+. |-++ |.=-|....|...+.+-+..++. ..|+|...-+- -.
T Consensus 197 i~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~------------~~ 264 (299)
T cd02940 197 VSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIE------------SW 264 (299)
T ss_pred EEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCC------------CH
Confidence 8741 1111 11112234466666666666666 68988766544 35
Q ss_pred hhHHHHHHcccceEEeccC
Q 008172 389 ADVSEAVRQYADALMLSGE 407 (575)
Q Consensus 389 ~Dv~nav~~G~D~vmLs~E 407 (575)
.|+..++..|||+||+..-
T Consensus 265 ~da~~~l~aGA~~V~i~ta 283 (299)
T cd02940 265 EDAAEFLLLGASVVQVCTA 283 (299)
T ss_pred HHHHHHHHcCCChheEcee
Confidence 6889999999999999744
No 72
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=89.32 E-value=1.6 Score=52.69 Aligned_cols=92 Identities=12% Similarity=0.182 Sum_probs=79.0
Q ss_pred CCCEEEecCcCChhhHHHHHHHHhccCC-------CCceEEeeecCHHHHhcHHHHHhc-C---------------CEEE
Q 008172 278 GVDFIAMSFVCDADSVRHLKKYVSGKSS-------RSIKVLAKIENLESLQKFEEIVEA-S---------------DGIM 334 (575)
Q Consensus 278 gvd~I~~SfV~sa~dv~~ir~~l~~~~~-------~~i~IIaKIEt~~av~nldeI~~~-s---------------DgIm 334 (575)
.+..+++||.++++|+.++.-++++.|. ..+.|+.=.||.+.++|.++|++. . =-||
T Consensus 486 ~i~~yIiSmt~~~sdvL~v~~l~k~~gl~~~~~~~~~l~VvPLFEti~dL~~a~~il~~l~~~p~yr~~l~~~~~~qeVM 565 (911)
T PRK00009 486 AIGAYIISMAETVSDVLEVLLLLKEAGLLDPAAARAPLPVVPLFETIEDLRNAADVMRQLLSLPWYRGLIAGRGNLQEVM 565 (911)
T ss_pred hhceEeecCCCCHHHHHHHHHHHHHcCCCccCCCCCCcCeECCcCCHHHHHhHHHHHHHHHcChHHHHHHhcCCCeEEEE
Confidence 5667899999999999999888876542 257899999999999999999887 1 2699
Q ss_pred EeCCCCCCCCCC----CChHHHHHHHHHHHHHcCCCEEE
Q 008172 335 VARGDLGVDIPL----EQIPTVQEIIIHVCRQLNKPVIV 369 (575)
Q Consensus 335 IaRGDLg~e~~~----e~v~~~Qk~Ii~~c~~~gKPviv 369 (575)
+|+.|=+-+-|. =.+..+|+++.+.|+++|.++..
T Consensus 566 lGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~ 604 (911)
T PRK00009 566 LGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTL 604 (911)
T ss_pred eecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 999999888886 46888999999999999999875
No 73
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=89.17 E-value=5.6 Score=37.18 Aligned_cols=116 Identities=22% Similarity=0.246 Sum_probs=69.1
Q ss_pred HHHHHHcCCCEEEecCcCC------hhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCCCCCC
Q 008172 271 IEFGIAEGVDFIAMSFVCD------ADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARGDLGVD 343 (575)
Q Consensus 271 i~~al~~gvd~I~~SfV~s------a~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGDLg~e 343 (575)
.+++.+.|+|+|.+..-.- .+.++++++.+ .+..++.++......+... ..+. +|++.+..+.-+..
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~-----~~~~v~~~~~~~~~~~~~~-~~~~g~d~i~~~~~~~~~~ 150 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYLAREDLELIRELREAV-----PDVKVVVKLSPTGELAAAA-AEEAGVDEVGLGNGGGGGG 150 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc-----CCceEEEEECCCCccchhh-HHHcCCCEEEEcCCcCCCC
Confidence 3678899999999987763 33444444433 2467888886544332210 2233 79999987765433
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 344 IPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 344 ~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
..... +.....+.......++|++.+.-+- + -.++..++..|+|++++.
T Consensus 151 ~~~~~-~~~~~~~~~~~~~~~~pi~~~GGi~---------~---~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 151 GRDAV-PIADLLLILAKRGSKVPVIAGGGIN---------D---PEDAAEALALGADGVIVG 199 (200)
T ss_pred CccCc-hhHHHHHHHHHhcCCCCEEEECCCC---------C---HHHHHHHHHhCCCEEEec
Confidence 32221 1111223333456789999876432 2 244566777899999985
No 74
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=89.11 E-value=8.5 Score=37.42 Aligned_cols=133 Identities=14% Similarity=0.111 Sum_probs=75.4
Q ss_pred HHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCC
Q 008172 269 DDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQ 348 (575)
Q Consensus 269 ~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~ 348 (575)
+.++.+.+.|+|+|.+.--.+ ++..+..+.++..+ ....+ -++.....+.+.++...+|++.+..-+-|..=. .-
T Consensus 70 ~~~~~~~~~gadgv~vh~~~~-~~~~~~~~~~~~~g-~~~~~--~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~-~~ 144 (210)
T TIGR01163 70 RYIEDFAEAGADIITVHPEAS-EHIHRLLQLIKDLG-AKAGI--VLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQ-KF 144 (210)
T ss_pred HHHHHHHHcCCCEEEEccCCc-hhHHHHHHHHHHcC-CcEEE--EECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcc-cc
Confidence 446777899999998876443 44445555565555 23333 344444577788888788998886433222111 11
Q ss_pred hHHHHH---HHHHHHHHc--CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHH
Q 008172 349 IPTVQE---IIIHVCRQL--NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVS 419 (575)
Q Consensus 349 v~~~Qk---~Ii~~c~~~--gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~ 419 (575)
-+...+ ++.+.+++. +.|+.++.-+ + ..++..++..|+|++.+.+.-..-.-|.++++
T Consensus 145 ~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI----------~---~env~~l~~~gad~iivgsai~~~~d~~~~~~ 207 (210)
T TIGR01163 145 IPDTLEKIREVRKMIDENGLSILIEVDGGV----------N---DDNARELAEAGADILVAGSAIFGADDYKEVIR 207 (210)
T ss_pred cHHHHHHHHHHHHHHHhcCCCceEEEECCc----------C---HHHHHHHHHcCCCEEEEChHHhCCCCHHHHHH
Confidence 122222 233333333 3577665321 1 14467778899999999855443344655554
No 75
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=88.86 E-value=8.2 Score=38.32 Aligned_cols=118 Identities=19% Similarity=0.196 Sum_probs=68.4
Q ss_pred CHHHHHHHHHcCCCEEEe--cCcCChh--hHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCCCC
Q 008172 267 DWDDIEFGIAEGVDFIAM--SFVCDAD--SVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARGDLG 341 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~--SfV~sa~--dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGDLg 341 (575)
+.+.++.+.+.|+|+|.+ +..+.++ ++.++.+.+.+.+ ++.+++.+.|.+-. ....+. +|.+.+...++.
T Consensus 81 ~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g--~~~iiv~v~t~~ea---~~a~~~G~d~i~~~~~g~t 155 (219)
T cd04729 81 TIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY--NCLLMADISTLEEA---LNAAKLGFDIIGTTLSGYT 155 (219)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh--CCeEEEECCCHHHH---HHHHHcCCCEEEccCcccc
Confidence 456788899999998766 2332233 6666666666554 46778877665433 222222 788876432221
Q ss_pred CC---CCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 342 VD---IPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 342 ~e---~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
-. ..... ...-+++. ...+.|++.+-.+- ...|+..++..|+|++++.
T Consensus 156 ~~~~~~~~~~-~~~l~~i~---~~~~ipvia~GGI~------------~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 156 EETAKTEDPD-FELLKELR---KALGIPVIAEGRIN------------SPEQAAKALELGADAVVVG 206 (219)
T ss_pred ccccCCCCCC-HHHHHHHH---HhcCCCEEEeCCCC------------CHHHHHHHHHCCCCEEEEc
Confidence 11 11111 12222222 23379999864332 2356778888999999986
No 76
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=88.84 E-value=9.2 Score=37.59 Aligned_cols=139 Identities=15% Similarity=0.180 Sum_probs=76.9
Q ss_pred HHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCC
Q 008172 268 WDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLE 347 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e 347 (575)
.+.+..+.+.|+|+|.+..-.+. +..+..+.+...+ ..+..-+......+.+.++...+|.+.+..-+-|..=. .
T Consensus 74 ~~~i~~~~~~g~d~v~vh~~~~~-~~~~~~~~~~~~~---~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~-~ 148 (220)
T PRK05581 74 DRYVPDFAKAGADIITFHVEASE-HIHRLLQLIKSAG---IKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQ-K 148 (220)
T ss_pred HHHHHHHHHcCCCEEEEeeccch-hHHHHHHHHHHcC---CEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcc-c
Confidence 44567778999999999887664 3334444444444 34444443223466678888889988876433322221 1
Q ss_pred ChHHHHHH---HHHHHHHcCC-C-EEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHH
Q 008172 348 QIPTVQEI---IIHVCRQLNK-P-VIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQ 422 (575)
Q Consensus 348 ~v~~~Qk~---Ii~~c~~~gK-P-vivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~ 422 (575)
.-+...+. +.+.+..++. | +.++.- + .| .++..+...|+|++...+.-..=..|.++++.++
T Consensus 149 ~~~~~~~~i~~~~~~~~~~~~~~~i~v~GG-I-------~~-----~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~ 215 (220)
T PRK05581 149 FIPEVLEKIRELRKLIDERGLDILIEVDGG-I-------NA-----DNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLR 215 (220)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCceEEEECC-C-------CH-----HHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHH
Confidence 12222333 2233333222 2 334321 1 12 2445555689999999766544456877777665
Q ss_pred HH
Q 008172 423 MA 424 (575)
Q Consensus 423 ~I 424 (575)
++
T Consensus 216 ~~ 217 (220)
T PRK05581 216 AE 217 (220)
T ss_pred HH
Confidence 44
No 77
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=88.72 E-value=8.2 Score=38.61 Aligned_cols=69 Identities=20% Similarity=0.308 Sum_probs=45.4
Q ss_pred HHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEe--eecCH-HHHhcHHHHHhc-CCEEEEeCCCCCCC
Q 008172 271 IEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLA--KIENL-ESLQKFEEIVEA-SDGIMVARGDLGVD 343 (575)
Q Consensus 271 i~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIa--KIEt~-~av~nldeI~~~-sDgImIaRGDLg~e 343 (575)
.+.+.+.|+|||.++|..+.+.++++.+.+ . -.+.++. ++.+. +.++|+.+.++. ++|+.++|.=+..+
T Consensus 149 ~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~~---~-~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~ 221 (235)
T cd00958 149 ARIGAELGADIVKTKYTGDAESFKEVVEGC---P-VPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRP 221 (235)
T ss_pred HHHHHHHCCCEEEecCCCCHHHHHHHHhcC---C-CCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCC
Confidence 456889999999999876545544444322 2 1233333 33343 367889999999 99999998766333
No 78
>PLN02591 tryptophan synthase
Probab=88.68 E-value=5.7 Score=40.90 Aligned_cols=119 Identities=15% Similarity=0.192 Sum_probs=79.8
Q ss_pred HHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEE--eCCCCCCCCCC
Q 008172 269 DDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMV--ARGDLGVDIPL 346 (575)
Q Consensus 269 ~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImI--aRGDLg~e~~~ 346 (575)
+-++.+.+.|+|++++|-.. .++..++++.+++.| +..|.-+=--..-+.+..|++.++|.+= +| .|+.=.-
T Consensus 97 ~F~~~~~~aGv~GviipDLP-~ee~~~~~~~~~~~g---l~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~--~GvTG~~ 170 (250)
T PLN02591 97 KFMATIKEAGVHGLVVPDLP-LEETEALRAEAAKNG---IELVLLTTPTTPTERMKAIAEASEGFVYLVSS--TGVTGAR 170 (250)
T ss_pred HHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHcC---CeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeC--CCCcCCC
Confidence 44677889999999999874 588888888888776 3444444111224568899999877652 33 2222222
Q ss_pred CChHHHHHHHHHHHHHc-CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 347 EQIPTVQEIIIHVCRQL-NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 347 e~v~~~Qk~Ii~~c~~~-gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
..++...+..++.++++ ++|+++-. ..-|++ |+..+...|+|++...
T Consensus 171 ~~~~~~~~~~i~~vk~~~~~Pv~vGF---------GI~~~e---~v~~~~~~GADGvIVG 218 (250)
T PLN02591 171 ASVSGRVESLLQELKEVTDKPVAVGF---------GISKPE---HAKQIAGWGADGVIVG 218 (250)
T ss_pred cCCchhHHHHHHHHHhcCCCceEEeC---------CCCCHH---HHHHHHhcCCCEEEEC
Confidence 35566667777777774 99999854 233444 5566677899999875
No 79
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=88.53 E-value=14 Score=36.60 Aligned_cols=127 Identities=17% Similarity=0.188 Sum_probs=74.0
Q ss_pred HHHHHHHHcCCCEEEecCcC-ChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCCCC
Q 008172 269 DDIEFGIAEGVDFIAMSFVC-DADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARGDLGVDIPL 346 (575)
Q Consensus 269 ~di~~al~~gvd~I~~SfV~-sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGDLg~e~~~ 346 (575)
..++.+.+.|+|+|.+.-.. ..++++++.+.....| +..++-+-+.+ .+.++.+. +|.+.+..-|.... +
T Consensus 85 ~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g---~~~~v~v~~~~---e~~~~~~~g~~~i~~t~~~~~~~-~- 156 (217)
T cd00331 85 YQIYEARAAGADAVLLIVAALDDEQLKELYELARELG---MEVLVEVHDEE---ELERALALGAKIIGINNRDLKTF-E- 156 (217)
T ss_pred HHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcC---CeEEEEECCHH---HHHHHHHcCCCEEEEeCCCcccc-C-
Confidence 35788999999999853221 2255555555444443 34455554443 35555555 79999985554322 2
Q ss_pred CChHHHHHHHHHHHHH--cCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHH
Q 008172 347 EQIPTVQEIIIHVCRQ--LNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVS 419 (575)
Q Consensus 347 e~v~~~Qk~Ii~~c~~--~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~ 419 (575)
.++ +.+.+.++. .+.|++...- .-+. .|+..+...|+|++.+..--.....|.++++
T Consensus 157 ~~~----~~~~~l~~~~~~~~pvia~gG---------I~s~---edi~~~~~~Ga~gvivGsai~~~~~p~~~~~ 215 (217)
T cd00331 157 VDL----NTTERLAPLIPKDVILVSESG---------ISTP---EDVKRLAEAGADAVLIGESLMRAPDPGAALR 215 (217)
T ss_pred cCH----HHHHHHHHhCCCCCEEEEEcC---------CCCH---HHHHHHHHcCCCEEEECHHHcCCCCHHHHHH
Confidence 222 222333333 4678886443 2233 3556666779999999766555566776665
No 80
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=88.26 E-value=2.1 Score=42.31 Aligned_cols=130 Identities=14% Similarity=0.144 Sum_probs=73.3
Q ss_pred HHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhc----HHHHHhc-----CCEEEEeCCCCCC
Q 008172 272 EFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQK----FEEIVEA-----SDGIMVARGDLGV 342 (575)
Q Consensus 272 ~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~n----ldeI~~~-----sDgImIaRGDLg~ 342 (575)
+.+.+.|+|+|.+..--..+.+.++.+.+++.| ..+.+..+.++.++++. ++.++.. .||..
T Consensus 74 ~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~-------- 144 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESG-GKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVV-------- 144 (215)
T ss_pred HHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcC-CeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEE--------
Confidence 567789999999998755566888888787665 44555666666555543 3444332 34443
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHH
Q 008172 343 DIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQ 422 (575)
Q Consensus 343 e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~ 422 (575)
++...+..+ +++- ...+.++.+.+.-+ +++-.++..++..|+|.+.+..--....-|.++++.|+
T Consensus 145 -~~~~~~~~i-~~l~---~~~~~~~~ivdgGI----------~~~g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~ 209 (215)
T PRK13813 145 -APATRPERV-RYIR---SRLGDELKIISPGI----------GAQGGKAADAIKAGADYVIVGRSIYNAADPREAAKAIN 209 (215)
T ss_pred -ECCCcchhH-HHHH---HhcCCCcEEEeCCc----------CCCCCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHHH
Confidence 333222212 1121 12233322121111 11211356777899999988744333456888888887
Q ss_pred HHH
Q 008172 423 MAS 425 (575)
Q Consensus 423 ~I~ 425 (575)
+.+
T Consensus 210 ~~~ 212 (215)
T PRK13813 210 EEI 212 (215)
T ss_pred HHH
Confidence 654
No 81
>PRK15452 putative protease; Provisional
Probab=88.18 E-value=6.8 Score=43.66 Aligned_cols=90 Identities=16% Similarity=0.287 Sum_probs=59.2
Q ss_pred ccCHHHHHHHHHcCCCEEEecCc----------CChhhHHHHHHHHhccCCCCceEEee---ecCHHHHhcH----HHHH
Q 008172 265 KKDWDDIEFGIAEGVDFIAMSFV----------CDADSVRHLKKYVSGKSSRSIKVLAK---IENLESLQKF----EEIV 327 (575)
Q Consensus 265 ekD~~di~~al~~gvd~I~~SfV----------~sa~dv~~ir~~l~~~~~~~i~IIaK---IEt~~av~nl----deI~ 327 (575)
-.+.+.++.|+++|||.|.+.+- -+.+|++++.++..++| . ++... |=..+-++.+ +.+.
T Consensus 10 ag~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g-~--kvyvt~n~i~~e~el~~~~~~l~~l~ 86 (443)
T PRK15452 10 AGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALG-K--KFYVVVNIAPHNAKLKTFIRDLEPVI 86 (443)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcC-C--EEEEEecCcCCHHHHHHHHHHHHHHH
Confidence 36889999999999999999331 14588888888887776 3 33333 2222334433 4444
Q ss_pred hc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHc--CCCEEEehhh
Q 008172 328 EA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQL--NKPVIVASQL 373 (575)
Q Consensus 328 ~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~--gKPvivaTq~ 373 (575)
+. .|||+|+ |+| ++..+++. +.|+...||+
T Consensus 87 ~~gvDgvIV~--d~G--------------~l~~~ke~~p~l~ih~stql 119 (443)
T PRK15452 87 AMKPDALIMS--DPG--------------LIMMVREHFPEMPIHLSVQA 119 (443)
T ss_pred hCCCCEEEEc--CHH--------------HHHHHHHhCCCCeEEEEecc
Confidence 44 7999994 443 23444443 7799999987
No 82
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=88.03 E-value=13 Score=38.33 Aligned_cols=98 Identities=13% Similarity=0.186 Sum_probs=69.4
Q ss_pred hhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 291 DSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 291 ~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
+-++.++++.++.| +.+++-+-+.+.++-+.+ .+|.+.|+-+++. |-.+++++.+.||||++.
T Consensus 66 ~gl~~L~~~~~~~G---l~~~Tev~d~~~v~~~~e---~vdilqIgs~~~~-----------n~~LL~~va~tgkPVilk 128 (250)
T PRK13397 66 QGIRYLHEVCQEFG---LLSVSEIMSERQLEEAYD---YLDVIQVGARNMQ-----------NFEFLKTLSHIDKPILFK 128 (250)
T ss_pred HHHHHHHHHHHHcC---CCEEEeeCCHHHHHHHHh---cCCEEEECccccc-----------CHHHHHHHHccCCeEEEe
Confidence 34666677766655 778888887776655544 6999999977662 356778888899999997
Q ss_pred hhhHHhhhcCCCCChhhHhhHHHHHH-cccceEEeccCcCCCCCH
Q 008172 371 SQLLESMVEYPTPTRAEVADVSEAVR-QYADALMLSGESAIGPFG 414 (575)
Q Consensus 371 Tq~LeSM~~~p~PtrAEv~Dv~nav~-~G~D~vmLs~ETa~G~yP 414 (575)
|.+ .+|-+|+-..+..+. .|..=++|..--. -.||
T Consensus 129 ~G~--------~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~-~~Y~ 164 (250)
T PRK13397 129 RGL--------MATIEEYLGALSYLQDTGKSNIILCERGV-RGYD 164 (250)
T ss_pred CCC--------CCCHHHHHHHHHHHHHcCCCeEEEEcccc-CCCC
Confidence 653 478888888888766 5776677763122 3465
No 83
>PRK04302 triosephosphate isomerase; Provisional
Probab=87.75 E-value=21 Score=35.71 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=77.3
Q ss_pred HHHHHHcCCCEEEecCc---CChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeC-CCCCCCCC
Q 008172 271 IEFGIAEGVDFIAMSFV---CDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVAR-GDLGVDIP 345 (575)
Q Consensus 271 i~~al~~gvd~I~~SfV---~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaR-GDLg~e~~ 345 (575)
++.+.+.|+|+|+++.- ...+++.+..+...+.| +..|.-+-+ .+.+..+.+. .|.|-+.+ +-.|...+
T Consensus 78 ~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~G---l~~I~~v~~---~~~~~~~~~~~~~~I~~~p~~~igt~~~ 151 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLG---LESVVCVNN---PETSAAAAALGPDYVAVEPPELIGTGIP 151 (223)
T ss_pred HHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCC---CeEEEEcCC---HHHHHHHhcCCCCEEEEeCccccccCCC
Confidence 56778899999999985 34445555555554444 556655544 3344454444 46655544 33444333
Q ss_pred CC-ChHHHHHHHHHHHHHc--CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHH
Q 008172 346 LE-QIPTVQEIIIHVCRQL--NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVS 419 (575)
Q Consensus 346 ~e-~v~~~Qk~Ii~~c~~~--gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~ 419 (575)
.. ..|..-+++++..++. +.|++..- ..-+ -.++..+...|+|+++..+....-..|.+.++
T Consensus 152 ~~~~~~~~i~~~~~~ir~~~~~~pvi~Gg---------gI~~---~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~ 216 (223)
T PRK04302 152 VSKAKPEVVEDAVEAVKKVNPDVKVLCGA---------GIST---GEDVKAALELGADGVLLASGVVKAKDPEAALR 216 (223)
T ss_pred CCcCCHHHHHHHHHHHHhccCCCEEEEEC---------CCCC---HHHHHHHHcCCCCEEEEehHHhCCcCHHHHHH
Confidence 21 3345556666777764 57887642 1222 23455666799999999866665566655544
No 84
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=87.57 E-value=8.5 Score=38.84 Aligned_cols=144 Identities=8% Similarity=0.075 Sum_probs=85.3
Q ss_pred CCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHH--hcCCEEEEeCCC
Q 008172 262 TLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIV--EASDGIMVARGD 339 (575)
Q Consensus 262 ~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~--~~sDgImIaRGD 339 (575)
-+++.=...++...+.|+|+|.+-+--+...+.+..+.+++.| ..+.|-..-++ .++.+.+++ ...|.|++
T Consensus 72 Lm~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G-~~~gval~p~t--~~e~l~~~l~~~~vD~Vl~---- 144 (228)
T PTZ00170 72 LMVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAG-MKVGVAIKPKT--PVEVLFPLIDTDLVDMVLV---- 144 (228)
T ss_pred ECCCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCC-CeEEEEECCCC--CHHHHHHHHccchhhhHHh----
Confidence 3333334556777899999998865444333777777777776 44554444444 688899998 77899886
Q ss_pred CCCCCCCCCh---HHHHHHHHHHHHHcC-CCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHH
Q 008172 340 LGVDIPLEQI---PTVQEIIIHVCRQLN-KPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQ 415 (575)
Q Consensus 340 Lg~e~~~e~v---~~~Qk~Ii~~c~~~g-KPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPv 415 (575)
++++-|.... +..-.++-+.....+ ..+.++ +.=+. ..+..++..|+|.+.+.+--.....|.
T Consensus 145 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~Vd----------GGI~~---~ti~~~~~aGad~iVvGsaI~~a~d~~ 211 (228)
T PTZ00170 145 MTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVD----------GGINL---ETIDIAADAGANVIVAGSSIFKAKDRK 211 (228)
T ss_pred hhcccCCCCcEecHHHHHHHHHHHHhcccCeEEEC----------CCCCH---HHHHHHHHcCCCEEEEchHHhCCCCHH
Confidence 6777665332 222223322222222 223222 11122 134567788999998864433345688
Q ss_pred HHHHHHHHHH
Q 008172 416 KAVSVLQMAS 425 (575)
Q Consensus 416 eaV~~m~~I~ 425 (575)
++++.+++..
T Consensus 212 ~~~~~i~~~~ 221 (228)
T PTZ00170 212 QAIELLRESV 221 (228)
T ss_pred HHHHHHHHHH
Confidence 8888777654
No 85
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=87.46 E-value=9.4 Score=42.91 Aligned_cols=125 Identities=17% Similarity=0.222 Sum_probs=74.8
Q ss_pred cCHHHHHHHHHcCCCEEEec--CcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCC
Q 008172 266 KDWDDIEFGIAEGVDFIAMS--FVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVD 343 (575)
Q Consensus 266 kD~~di~~al~~gvd~I~~S--fV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e 343 (575)
.+.+.++..++.|+|.|++- +-++ +.+.+..+.+.....+-..++.-+-|.+...++-+ .=+|+|-+|=|--+..
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a~g~~-~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~--aGad~i~vg~g~gs~~ 304 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTAHGHS-EGVLDRVREIKAKYPDVQIIAGNVATAEAARALIE--AGADAVKVGIGPGSIC 304 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECCCCcc-hhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHH--cCCCEEEECCCCCccc
Confidence 45777788889999988653 2222 33444444454432122446678888887766654 2389998753321111
Q ss_pred CCC--CC--hHH--HHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 344 IPL--EQ--IPT--VQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 344 ~~~--e~--v~~--~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
... .. +|. +-.++.+.|++.+.|+|.-.-+- + -.|++.|+..|||++|+.
T Consensus 305 ~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~---------~---~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 305 TTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIR---------Y---SGDIAKALAAGASAVMLG 360 (486)
T ss_pred cceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCC---------C---HHHHHHHHHhCCCEEEEC
Confidence 111 11 222 22345566777789998743322 2 368899999999999994
No 86
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=87.34 E-value=7.3 Score=40.21 Aligned_cols=123 Identities=21% Similarity=0.247 Sum_probs=70.6
Q ss_pred HHHHHHHHcCCCEEEecC----c-------CChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-----CCE
Q 008172 269 DDIEFGIAEGVDFIAMSF----V-------CDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-----SDG 332 (575)
Q Consensus 269 ~di~~al~~gvd~I~~Sf----V-------~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-----sDg 332 (575)
+..+.+.+.|+|+|-+.+ + ++++.+.++.+.+++.- +..|++|+-.-...+++.++++. +|+
T Consensus 115 ~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~ 192 (289)
T cd02810 115 ELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV--DIPLLVKLSPYFDLEDIVELAKAAERAGADG 192 (289)
T ss_pred HHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc--CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCE
Confidence 445566778999987654 2 24455666555555431 46799998654333344444443 799
Q ss_pred EEEeCCCCCCCC--------------CC---CChHHHHHHHHHHHHHc--CCCEEEehhhHHhhhcCCCCChhhHhhHHH
Q 008172 333 IMVARGDLGVDI--------------PL---EQIPTVQEIIIHVCRQL--NKPVIVASQLLESMVEYPTPTRAEVADVSE 393 (575)
Q Consensus 333 ImIaRGDLg~e~--------------~~---e~v~~~Qk~Ii~~c~~~--gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n 393 (575)
|.+.-+-.+... ++ ...+...+.+-+..... +.|+|....+- ...|+..
T Consensus 193 i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~------------~~~da~~ 260 (289)
T cd02810 193 LTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGID------------SGEDVLE 260 (289)
T ss_pred EEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCC------------CHHHHHH
Confidence 998532111100 11 11122333344444445 78998765443 2356788
Q ss_pred HHHcccceEEec
Q 008172 394 AVRQYADALMLS 405 (575)
Q Consensus 394 av~~G~D~vmLs 405 (575)
++..|+|+||+.
T Consensus 261 ~l~~GAd~V~vg 272 (289)
T cd02810 261 MLMAGASAVQVA 272 (289)
T ss_pred HHHcCccHheEc
Confidence 888999999997
No 87
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=87.00 E-value=27 Score=35.11 Aligned_cols=157 Identities=15% Similarity=0.065 Sum_probs=99.2
Q ss_pred CCCCccCHH-HHHHHHHcCCCEEEecCcCCh------hhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCE
Q 008172 261 PTLSKKDWD-DIEFGIAEGVDFIAMSFVCDA------DSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDG 332 (575)
Q Consensus 261 p~lsekD~~-di~~al~~gvd~I~~SfV~sa------~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDg 332 (575)
..+|..++. .++...+.|+|.|-+.|-.+. ++..++-+.+.+.+ .+..+.+..=+ +.+.++...+. .|.
T Consensus 14 ~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~-~~~~~~~l~~~--~~~~i~~a~~~g~~~ 90 (265)
T cd03174 14 ATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLV-PNVKLQALVRN--REKGIERALEAGVDE 90 (265)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhcc-CCcEEEEEccC--chhhHHHHHhCCcCE
Confidence 345656654 455666789999999998887 67766666666554 34555555533 24445555555 577
Q ss_pred EEEeCCCCC-------CCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHcccceEEe
Q 008172 333 IMVARGDLG-------VDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQYADALML 404 (575)
Q Consensus 333 ImIaRGDLg-------~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~G~D~vmL 404 (575)
|.+. .+.+ ...+.+....--...++.++++|.++.+.+... ..+.-+..++.+++. +...|+|.+.|
T Consensus 91 i~i~-~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~----~~~~~~~~~l~~~~~~~~~~g~~~i~l 165 (265)
T cd03174 91 VRIF-DSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDA----FGCKTDPEYVLEVAKALEEAGADEISL 165 (265)
T ss_pred EEEE-EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEee----cCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 7764 1111 001222344555678889999999999865322 111256666777666 66789999999
Q ss_pred ccCcCCCCCHHHHHHHHHHHHH
Q 008172 405 SGESAIGPFGQKAVSVLQMASS 426 (575)
Q Consensus 405 s~ETa~G~yPveaV~~m~~I~~ 426 (575)
. .|.-..+|.+.-+.++.+.+
T Consensus 166 ~-Dt~G~~~P~~v~~li~~l~~ 186 (265)
T cd03174 166 K-DTVGLATPEEVAELVKALRE 186 (265)
T ss_pred c-hhcCCcCHHHHHHHHHHHHH
Confidence 7 66667889877776666543
No 88
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=86.94 E-value=7 Score=41.95 Aligned_cols=212 Identities=17% Similarity=0.209 Sum_probs=124.7
Q ss_pred ccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHh-----c----------cCCCCceEEeeecCHHHHhcHHHHHhc
Q 008172 265 KKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVS-----G----------KSSRSIKVLAKIENLESLQKFEEIVEA 329 (575)
Q Consensus 265 ekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~-----~----------~~~~~i~IIaKIEt~~av~nldeI~~~ 329 (575)
+.+++.+.-|++.|+|+|.+.- +++..++++-+ . ..+.....+.+|.+++..+...+..+.
T Consensus 13 ~~~k~~vt~AlEsGv~~vvv~~----~~~~~v~~lg~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~e~~a~~~~~~ 88 (344)
T PRK02290 13 EERKEVVTTALESGVDGVVVDE----EDVERVRELGRIKVAADDPDADAVVISGSAGEDGAYVEIRDKEDEEFAAELAKE 88 (344)
T ss_pred hhHHHHHHHHHHcCCCEEEECH----HHhHHHHhhCCeeEEEEcCCcchhhhcccCCceEEEEEECCHHHHHHHHHhhcc
Confidence 6778889999999999998753 56666554311 0 112457788899999999999999999
Q ss_pred CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcC
Q 008172 330 SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESA 409 (575)
Q Consensus 330 sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa 409 (575)
.|.++|--.|. .-+|+|+ +|.+..+..+ ++.. .-+.+|..=.+.+...|+|+|+|..+.
T Consensus 89 ~~~viv~~~dW-~iIPlEn-------lIA~~~~~~~-l~a~-----------v~~~~eA~~a~~~LE~G~dGVvl~~~d- 147 (344)
T PRK02290 89 VDYVIVEGRDW-TIIPLEN-------LIADLGQSGK-IIAG-----------VADAEEAKLALEILEKGVDGVLLDPDD- 147 (344)
T ss_pred CCEEEEECCCC-cEecHHH-------HHhhhcCCce-EEEE-----------eCCHHHHHHHHHHhccCCCeEEECCCC-
Confidence 99999964443 3356555 4444433333 3321 344456666688999999999998653
Q ss_pred CCCCHHHHHHHHHHHHHH-HhhhhhhhhhHHhh---------h-cccccCCCCC----Cchh--hHHHHH-------HHH
Q 008172 410 IGPFGQKAVSVLQMASSR-MELWSREENRQSAL---------C-GQRQLGESLH----DRIA--EQICNC-------AVD 465 (575)
Q Consensus 410 ~G~yPveaV~~m~~I~~~-aE~~~~~~~~~~~~---------~-~~~~~~~~~~----~~~~--~~ia~~-------av~ 465 (575)
|-+ ++-+...+.+ .|+.....-.-... | +...+..+-. .+.+ =.+.++ ...
T Consensus 148 ----~~e-i~~~~~~~~~~~~~l~L~~a~Vt~V~~vG~GdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pYva~ 222 (344)
T PRK02290 148 ----PNE-IKAIVALIEEAREKLELVPATVTRVEPVGMGDRVCVDTCSLMEEGEGMLVGSSSRGMFLVHAETEENPYVAS 222 (344)
T ss_pred ----HHH-HHHHHHHHhccCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCceEEEcccCCcEEEEecccccCCCccC
Confidence 433 3334444433 22211000000000 0 0000000000 0000 000000 011
Q ss_pred HHHhcCCcEEEEEcCC-hhHHHHHhccCCCCcEEEEcCcHHH
Q 008172 466 MANNLGVDAIFVYTKH-GHMASLLSRNRPNPPIFAFTNDDST 506 (575)
Q Consensus 466 ~a~~~~AkaIVVfT~S-G~TAr~VSr~RP~~PIiAvT~~~~~ 506 (575)
--++.||-++=.|+.. |...+++|-.+.--.|+++-.+-++
T Consensus 223 RPFRVNAGaVhaYv~~pgg~T~YLsEL~sG~eVlvVd~~G~t 264 (344)
T PRK02290 223 RPFRVNAGAVHAYVRVPGDKTRYLSELRSGDEVLVVDADGNT 264 (344)
T ss_pred CCeeEecCcceeEEEcCCCcchhhHhhcCCCEEEEEeCCCCE
Confidence 3456788887778777 7788899999999999999776654
No 89
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=86.80 E-value=14 Score=36.66 Aligned_cols=130 Identities=12% Similarity=0.132 Sum_probs=69.1
Q ss_pred cCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeec---------------CHHHHhcHHHHHhc-
Q 008172 266 KDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIE---------------NLESLQKFEEIVEA- 329 (575)
Q Consensus 266 kD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIE---------------t~~av~nldeI~~~- 329 (575)
.+.++++..++.|+|.|++..-- .++...++++....+ .+ .++.-|. ..+.++.+..+.+.
T Consensus 83 ~~~e~~~~~~~~Gad~vvigs~~-l~dp~~~~~i~~~~g-~~-~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (234)
T cd04732 83 RSLEDIERLLDLGVSRVIIGTAA-VKNPELVKELLKEYG-GE-RIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELG 159 (234)
T ss_pred CCHHHHHHHHHcCCCEEEECchH-HhChHHHHHHHHHcC-Cc-eEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcC
Confidence 45788888899999998876432 233333444444333 21 1211111 11223334444444
Q ss_pred CCEEEEe-CCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCc
Q 008172 330 SDGIMVA-RGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGES 408 (575)
Q Consensus 330 sDgImIa-RGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ET 408 (575)
+|++.+- +.--|..-+ .+ .+.+-+.+.....|++.+.- .-+.+ |+..+...|+|++|+..--
T Consensus 160 a~~iii~~~~~~g~~~g-~~----~~~i~~i~~~~~ipvi~~GG---------i~~~~---di~~~~~~Ga~gv~vg~~~ 222 (234)
T cd04732 160 VKAIIYTDISRDGTLSG-PN----FELYKELAAATGIPVIASGG---------VSSLD---DIKALKELGVAGVIVGKAL 222 (234)
T ss_pred CCEEEEEeecCCCccCC-CC----HHHHHHHHHhcCCCEEEecC---------CCCHH---HHHHHHHCCCCEEEEeHHH
Confidence 7888875 222222222 22 22233334556899998654 33444 4455555699999997555
Q ss_pred CCCCCHH
Q 008172 409 AIGPFGQ 415 (575)
Q Consensus 409 a~G~yPv 415 (575)
-.|.++.
T Consensus 223 ~~~~~~~ 229 (234)
T cd04732 223 YEGKITL 229 (234)
T ss_pred HcCCCCH
Confidence 5555543
No 90
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=86.71 E-value=12 Score=38.80 Aligned_cols=105 Identities=10% Similarity=0.172 Sum_probs=74.9
Q ss_pred hhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEE
Q 008172 290 ADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIV 369 (575)
Q Consensus 290 a~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviv 369 (575)
.+.++.++++.++.| +.+++-+-+.+.++-+.+ .+|.+.||-+++. |..+++++.+.||||++
T Consensus 75 ~~gl~~l~~~~~~~G---l~~~t~~~d~~~~~~l~~---~~d~lkI~s~~~~-----------n~~LL~~~a~~gkPVil 137 (260)
T TIGR01361 75 EEGLKLLRRAADEHG---LPVVTEVMDPRDVEIVAE---YADILQIGARNMQ-----------NFELLKEVGKQGKPVLL 137 (260)
T ss_pred HHHHHHHHHHHHHhC---CCEEEeeCChhhHHHHHh---hCCEEEECccccc-----------CHHHHHHHhcCCCcEEE
Confidence 566778888887766 789998888877766654 4799999977652 23478888899999999
Q ss_pred ehhhHHhhhcCCCCChhhHhhHHHHHH-cccceEEeccC-c-CCCCCHHHHHH
Q 008172 370 ASQLLESMVEYPTPTRAEVADVSEAVR-QYADALMLSGE-S-AIGPFGQKAVS 419 (575)
Q Consensus 370 aTq~LeSM~~~p~PtrAEv~Dv~nav~-~G~D~vmLs~E-T-a~G~yPveaV~ 419 (575)
.|.|. +|-+|+...+..+. .|.+=++|..- | ....||-+.+.
T Consensus 138 k~G~~--------~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~d 182 (260)
T TIGR01361 138 KRGMG--------NTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLD 182 (260)
T ss_pred eCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcC
Confidence 87654 57778877777765 57766777532 3 33245555544
No 91
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=86.60 E-value=14 Score=37.53 Aligned_cols=149 Identities=13% Similarity=0.136 Sum_probs=90.8
Q ss_pred CCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCC
Q 008172 262 TLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLG 341 (575)
Q Consensus 262 ~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg 341 (575)
-+.+.=...+..-.+.|+|+|.+-+=.+..+..++-+.+++.| ....|.-+-+| .++.++.++...|.|+| ++
T Consensus 66 LMv~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G-~kaGlalnP~T--~~~~l~~~l~~vD~VLv----Ms 138 (229)
T PRK09722 66 LMVTDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAG-MKVGLVLNPET--PVESIKYYIHLLDKITV----MT 138 (229)
T ss_pred EEecCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcC-CCEEEEeCCCC--CHHHHHHHHHhcCEEEE----EE
Confidence 3444444567777889999987765323346777777788777 56788888888 56889999999999998 34
Q ss_pred CCCCC---CChHHHHHHHHHHH---HHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCC--CC
Q 008172 342 VDIPL---EQIPTVQEIIIHVC---RQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIG--PF 413 (575)
Q Consensus 342 ~e~~~---e~v~~~Qk~Ii~~c---~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G--~y 413 (575)
++-|. .-.+..-++|-+.. .++|..+.+. +.- .=+. .-+......|+|.+.+.+---.| +.
T Consensus 139 V~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~Ie-------VDG-GI~~---~~i~~~~~aGad~~V~Gss~iF~~~~d 207 (229)
T PRK09722 139 VDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIE-------VDG-SCNQ---KTYEKLMEAGADVFIVGTSGLFNLDED 207 (229)
T ss_pred EcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEE-------EEC-CCCH---HHHHHHHHcCCCEEEEChHHHcCCCCC
Confidence 44433 33333333333322 2444443321 111 1111 12345567999999886321223 35
Q ss_pred HHHHHHHHHHHHHHH
Q 008172 414 GQKAVSVLQMASSRM 428 (575)
Q Consensus 414 PveaV~~m~~I~~~a 428 (575)
|.++++.|+...+++
T Consensus 208 ~~~~i~~l~~~~~~~ 222 (229)
T PRK09722 208 IDEAWDIMTAQIEAA 222 (229)
T ss_pred HHHHHHHHHHHHHHh
Confidence 788888888765443
No 92
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=86.58 E-value=2.5 Score=51.39 Aligned_cols=138 Identities=17% Similarity=0.178 Sum_probs=95.2
Q ss_pred CEEEecCcCChhhHHHHHHHHhccC----CCCceEEeeecCHHHHhcHHHHHhc-C----------------CEEEEeCC
Q 008172 280 DFIAMSFVCDADSVRHLKKYVSGKS----SRSIKVLAKIENLESLQKFEEIVEA-S----------------DGIMVARG 338 (575)
Q Consensus 280 d~I~~SfV~sa~dv~~ir~~l~~~~----~~~i~IIaKIEt~~av~nldeI~~~-s----------------DgImIaRG 338 (575)
...++||.++++|+.++.-+.++.| ...+.|+.=.||.+.++|.++|++. . =-||+|+.
T Consensus 547 g~yIISmt~~~sdiL~V~~l~k~~g~~~~~~~l~VvPLFETi~dL~~a~~il~~ll~~p~Yr~~l~~~~~~~qeVMlGYS 626 (974)
T PTZ00398 547 GAYIISMCRNPSDILLVHVFQKEILKSGASKRQRVVPLLETIESLNSSSKTLEELFSNPWYLKHLKTVDNGIQEIMIGYS 626 (974)
T ss_pred ceeeeCCCCCHHHHHHHHHHHHHhCCcCCCCCcCeeCCcCCHHHHHhHHHHHHHHHcCHHHHHHHhhccCCeEEEEEecc
Confidence 3478999999999999988877643 1357899999999999999999877 1 26999999
Q ss_pred CCCCCCCC----CChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCH
Q 008172 339 DLGVDIPL----EQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFG 414 (575)
Q Consensus 339 DLg~e~~~----e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yP 414 (575)
|=+-+-|. =.+..+|+++.+.|+++|..+..-=-.=.|+-....|+..-+-.--.....|.=-+---||+-.-+|+
T Consensus 627 DS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~FhGrGGsvgRGGgp~~~aIlsqp~~~~~g~ir~TeQGE~i~~ky~ 706 (974)
T PTZ00398 627 DSGKDGGRLTSAWELYKAQERLSNIARQYGVEIRFFHGRGGSVSRGGGPQHLAILSQPPNTIKSYLRITIQGETITQNFG 706 (974)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCCChHHHHhcCCCccccCeeEEeeechhhHHhcC
Confidence 99999886 46888999999999999999886422222333333454432111001112233334555666555665
Q ss_pred HHH
Q 008172 415 QKA 417 (575)
Q Consensus 415 vea 417 (575)
...
T Consensus 707 ~~~ 709 (974)
T PTZ00398 707 LKG 709 (974)
T ss_pred ChH
Confidence 443
No 93
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=86.57 E-value=9.1 Score=43.04 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=79.9
Q ss_pred CCCCccCHHHHHHHHHcCCCEEEe--cCcCChhhHHHHHHHHhccCCCCceEEee-ecCHHHHhcHHHHHhcCCEEEEeC
Q 008172 261 PTLSKKDWDDIEFGIAEGVDFIAM--SFVCDADSVRHLKKYVSGKSSRSIKVLAK-IENLESLQKFEEIVEASDGIMVAR 337 (575)
Q Consensus 261 p~lsekD~~di~~al~~gvd~I~~--SfV~sa~dv~~ir~~l~~~~~~~i~IIaK-IEt~~av~nldeI~~~sDgImIaR 337 (575)
-.+.+.+.+.++..++.|+|.|++ ++-++ +.+.++.+.++... .++.||+= +-|.++..++-+ .=+|+|=||=
T Consensus 220 v~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~-~~~~~~i~~i~~~~-~~~~vi~g~~~t~~~~~~l~~--~G~d~i~vg~ 295 (475)
T TIGR01303 220 VGINGDVGGKAKALLDAGVDVLVIDTAHGHQ-VKMISAIKAVRALD-LGVPIVAGNVVSAEGVRDLLE--AGANIIKVGV 295 (475)
T ss_pred eeeCccHHHHHHHHHHhCCCEEEEeCCCCCc-HHHHHHHHHHHHHC-CCCeEEEeccCCHHHHHHHHH--hCCCEEEECC
Confidence 345566778888888999999885 45333 44444444555443 45778886 777777766554 2379987653
Q ss_pred CCCCCCCC---CC--ChHHHH--HHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEecc
Q 008172 338 GDLGVDIP---LE--QIPTVQ--EIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSG 406 (575)
Q Consensus 338 GDLg~e~~---~e--~v~~~Q--k~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ 406 (575)
|- |.-+- .. .+|.++ -...+.+++.|+|+|.-.. ..+ -.|++.|+..|||++|+.+
T Consensus 296 g~-Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGg---------i~~---~~di~kala~GA~~vm~g~ 358 (475)
T TIGR01303 296 GP-GAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGG---------VRH---PRDVALALAAGASNVMVGS 358 (475)
T ss_pred cC-CccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCC---------CCC---HHHHHHHHHcCCCEEeech
Confidence 31 11111 11 122222 2455666888999886332 222 3799999999999999973
No 94
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=86.53 E-value=8.7 Score=42.15 Aligned_cols=137 Identities=14% Similarity=0.165 Sum_probs=80.6
Q ss_pred HHcCCCEEEecC-----c----------CChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-----CCEEE
Q 008172 275 IAEGVDFIAMSF-----V----------CDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-----SDGIM 334 (575)
Q Consensus 275 l~~gvd~I~~Sf-----V----------~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-----sDgIm 334 (575)
-+.|+|+|-+.+ + +.++.+.++.+.+.+. -++.|++||= + .+.++.+|++. +|||.
T Consensus 123 ~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~--~~~Pv~vKl~-p-~~~~~~~~a~~~~~~Gadgi~ 198 (420)
T PRK08318 123 EETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG--SRLPVIVKLT-P-NITDIREPARAAKRGGADAVS 198 (420)
T ss_pred HhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc--cCCcEEEEcC-C-CcccHHHHHHHHHHCCCCEEE
Confidence 456888876532 2 3455666666656543 2578999994 2 34556667664 79988
Q ss_pred E-----eCCC-----------C------CCCCCCCChHHHHHHHHHHHHHc---CCCEEEehhhHHhhhcCCCCChhhHh
Q 008172 335 V-----ARGD-----------L------GVDIPLEQIPTVQEIIIHVCRQL---NKPVIVASQLLESMVEYPTPTRAEVA 389 (575)
Q Consensus 335 I-----aRGD-----------L------g~e~~~e~v~~~Qk~Ii~~c~~~---gKPvivaTq~LeSM~~~p~PtrAEv~ 389 (575)
+ +|-. | |.=-|....|...+.|-+..++. ..|+|-..-+. ...
T Consensus 199 ~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~------------s~~ 266 (420)
T PRK08318 199 LINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIE------------TWR 266 (420)
T ss_pred EecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcC------------CHH
Confidence 2 2211 1 11112344555666666665554 57898765544 456
Q ss_pred hHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhh
Q 008172 390 DVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWS 432 (575)
Q Consensus 390 Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~ 432 (575)
|+...++.|||+||+..-.-. +-| . .+.+|.++-+.|+
T Consensus 267 da~e~i~aGA~~Vqi~ta~~~-~gp-~---ii~~I~~~L~~~l 304 (420)
T PRK08318 267 DAAEFILLGAGTVQVCTAAMQ-YGF-R---IVEDMISGLSHYM 304 (420)
T ss_pred HHHHHHHhCCChheeeeeecc-CCc-h---hHHHHHHHHHHHH
Confidence 888999999999999733222 123 2 3344555555444
No 95
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=86.41 E-value=11 Score=38.77 Aligned_cols=119 Identities=15% Similarity=0.180 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCC-EEEE-eCCCCCCCCCC
Q 008172 269 DDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASD-GIMV-ARGDLGVDIPL 346 (575)
Q Consensus 269 ~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sD-gImI-aRGDLg~e~~~ 346 (575)
+.++.+.+.|+|+|+++..- .++..++.+.+++.|.+-+.+++- .| ..+.+..|++.+| .|++ ++-..+-+-
T Consensus 106 ~f~~~~~~aGvdgviipDlp-~ee~~~~~~~~~~~gl~~i~lv~P-~T--~~eri~~i~~~~~gfiy~vs~~G~TG~~-- 179 (256)
T TIGR00262 106 EFYAKCKEVGVDGVLVADLP-LEESGDLVEAAKKHGVKPIFLVAP-NA--DDERLKQIAEKSQGFVYLVSRAGVTGAR-- 179 (256)
T ss_pred HHHHHHHHcCCCEEEECCCC-hHHHHHHHHHHHHCCCcEEEEECC-CC--CHHHHHHHHHhCCCCEEEEECCCCCCCc--
Confidence 45677889999999999874 478888888888776332333332 22 4678899999988 4444 442222110
Q ss_pred CChHHHHHHHHHHHHH-cCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 347 EQIPTVQEIIIHVCRQ-LNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 347 e~v~~~Qk~Ii~~c~~-~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
.....-....++..++ .++|+++-. ..-|.+ ++..+...|+|++...
T Consensus 180 ~~~~~~~~~~i~~lr~~~~~pi~vgf---------GI~~~e---~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 180 NRAASALNELVKRLKAYSAKPVLVGF---------GISKPE---QVKQAIDAGADGVIVG 227 (256)
T ss_pred ccCChhHHHHHHHHHhhcCCCEEEeC---------CCCCHH---HHHHHHHcCCCEEEEC
Confidence 1122223344444444 477888743 233333 5566778999998875
No 96
>PRK15447 putative protease; Provisional
Probab=86.37 E-value=6.7 Score=41.28 Aligned_cols=118 Identities=15% Similarity=0.159 Sum_probs=78.8
Q ss_pred ccCHHHHHHHH-HcCCCEEEecCcC-------ChhhHHHHHHHHhccCCCCceE-Eeee-cCHHHHhcHHHHHhc-CCEE
Q 008172 265 KKDWDDIEFGI-AEGVDFIAMSFVC-------DADSVRHLKKYVSGKSSRSIKV-LAKI-ENLESLQKFEEIVEA-SDGI 333 (575)
Q Consensus 265 ekD~~di~~al-~~gvd~I~~SfV~-------sa~dv~~ir~~l~~~~~~~i~I-IaKI-Et~~av~nldeI~~~-sDgI 333 (575)
..+.+++-.++ +.|||.|.+.... +.+++.++.+.+.++| +++.+ +..| -..+-++.+.++++. .|+|
T Consensus 14 ~~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~g-kkvyva~p~i~~~~~e~~~l~~~l~~~~~~v 92 (301)
T PRK15447 14 KETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAG-KEVVLSTLALVEAPSELKELRRLVENGEFLV 92 (301)
T ss_pred CCCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcC-CEEEEEecccccCHHHHHHHHHHHhcCCCEE
Confidence 46778887787 5699999997432 6689999999888877 55544 3355 445566777777776 5788
Q ss_pred EEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcC
Q 008172 334 MVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESA 409 (575)
Q Consensus 334 mIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa 409 (575)
++ +|+|. +..+++.|.|+...|||= +.| .+.- .-.-..|++.+.||-|-.
T Consensus 93 ~v--~d~g~--------------l~~~~e~~~~l~~d~~ln---i~N-----~~a~--~~l~~~G~~rv~ls~ELs 142 (301)
T PRK15447 93 EA--NDLGA--------------VRLLAERGLPFVAGPALN---CYN-----AATL--ALLARLGATRWCMPVELS 142 (301)
T ss_pred EE--eCHHH--------------HHHHHhcCCCEEEecccc---cCC-----HHHH--HHHHHcCCcEEEECCcCC
Confidence 87 44431 223334599999998863 111 1111 223457999999998865
No 97
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=86.29 E-value=31 Score=35.87 Aligned_cols=106 Identities=10% Similarity=0.241 Sum_probs=73.4
Q ss_pred hhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEE
Q 008172 290 ADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIV 369 (575)
Q Consensus 290 a~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviv 369 (575)
.+..+.++++..+.| +.+++-+-+...++-+.+ .+|.+-||-+++. +..+++++-+.||||++
T Consensus 77 ~~gl~~l~~~~~~~G---l~~~te~~d~~~~~~l~~---~vd~~kIga~~~~-----------n~~LL~~~a~~gkPV~l 139 (266)
T PRK13398 77 EEGLKILKEVGDKYN---LPVVTEVMDTRDVEEVAD---YADMLQIGSRNMQ-----------NFELLKEVGKTKKPILL 139 (266)
T ss_pred HHHHHHHHHHHHHcC---CCEEEeeCChhhHHHHHH---hCCEEEECccccc-----------CHHHHHHHhcCCCcEEE
Confidence 567788888887766 789998888877766655 4799999866652 24467777889999999
Q ss_pred ehhhHHhhhcCCCCChhhHhhHHHHHH-cccceEEec--cCcCCCCCHHHHHHH
Q 008172 370 ASQLLESMVEYPTPTRAEVADVSEAVR-QYADALMLS--GESAIGPFGQKAVSV 420 (575)
Q Consensus 370 aTq~LeSM~~~p~PtrAEv~Dv~nav~-~G~D~vmLs--~ETa~G~yPveaV~~ 420 (575)
.|.|- .|-.|+-..+..+. .|-.=++|. |=.....||-+.+.+
T Consensus 140 k~G~~--------~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl 185 (266)
T PRK13398 140 KRGMS--------ATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDL 185 (266)
T ss_pred eCCCC--------CCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHH
Confidence 76544 46667776666555 567545553 221345898766654
No 98
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=86.27 E-value=8.8 Score=42.11 Aligned_cols=132 Identities=15% Similarity=0.102 Sum_probs=83.5
Q ss_pred HHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEe-eecCHHHHhcHHHHHhcCCEEEEeC-CCCCCCCCCCC
Q 008172 271 IEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLA-KIENLESLQKFEEIVEASDGIMVAR-GDLGVDIPLEQ 348 (575)
Q Consensus 271 i~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIa-KIEt~~av~nldeI~~~sDgImIaR-GDLg~e~~~e~ 348 (575)
++.+.+.|+|++.+..--..+.+.++.+.+++.| +.+.. .+.....++.++++....|.+++.+ -|=+.. +.
T Consensus 243 v~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~G---ikvgVD~lnp~tp~e~i~~l~~~vD~Vllht~vdp~~~---~~ 316 (391)
T PRK13307 243 ARMAADATADAVVISGLAPISTIEKAIHEAQKTG---IYSILDMLNVEDPVKLLESLKVKPDVVELHRGIDEEGT---EH 316 (391)
T ss_pred HHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcC---CEEEEEEcCCCCHHHHHHHhhCCCCEEEEccccCCCcc---cc
Confidence 5567899999999999777777888888888776 33444 4444445677787766789999986 232211 11
Q ss_pred hHHHHHHHHHHHHHc--CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHH
Q 008172 349 IPTVQEIIIHVCRQL--NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMAS 425 (575)
Q Consensus 349 v~~~Qk~Ii~~c~~~--gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~ 425 (575)
.. ++ ++..++. +.++.++.- =+ ..++..++..|+|.+.+.+--..-+.|.++++.+++.+
T Consensus 317 --~~-~k-I~~ikk~~~~~~I~VdGG----------I~---~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i 378 (391)
T PRK13307 317 --AW-GN-IKEIKKAGGKILVAVAGG----------VR---VENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKL 378 (391)
T ss_pred --hH-HH-HHHHHHhCCCCcEEEECC----------cC---HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhh
Confidence 11 22 2333332 456776532 12 23366777899999888644223356888888776554
No 99
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=86.19 E-value=8 Score=38.49 Aligned_cols=121 Identities=18% Similarity=0.219 Sum_probs=64.2
Q ss_pred cCHHHHHHHHHcCCCEEEecC--cCChhhHHHHHHHHhccCCCCceEEee-----ecC--------HHHHhcHHHHHhc-
Q 008172 266 KDWDDIEFGIAEGVDFIAMSF--VCDADSVRHLKKYVSGKSSRSIKVLAK-----IEN--------LESLQKFEEIVEA- 329 (575)
Q Consensus 266 kD~~di~~al~~gvd~I~~Sf--V~sa~dv~~ir~~l~~~~~~~i~IIaK-----IEt--------~~av~nldeI~~~- 329 (575)
++.++++.+++.|+|.|+++- .++++.+.++.+.+ +.+.+.+-.. ++. ...++-++...+.
T Consensus 82 ~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~---g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g 158 (230)
T TIGR00007 82 RSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEY---GPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELG 158 (230)
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHh---CCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCC
Confidence 578899999999999988762 35555555555444 2122211111 111 1112222333333
Q ss_pred CCEEEEe-CCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEecc
Q 008172 330 SDGIMVA-RGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSG 406 (575)
Q Consensus 330 sDgImIa-RGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ 406 (575)
+|++++. +.-=+..-+ .+. +.+-+.++....|++.+.-+ -+. .|+..+...|+|++|+..
T Consensus 159 ~~~ii~~~~~~~g~~~g-~~~----~~i~~i~~~~~ipvia~GGi---------~~~---~di~~~~~~Gadgv~ig~ 219 (230)
T TIGR00007 159 LEGIIYTDISRDGTLSG-PNF----ELTKELVKAVNVPVIASGGV---------SSI---DDLIALKKLGVYGVIVGK 219 (230)
T ss_pred CCEEEEEeecCCCCcCC-CCH----HHHHHHHHhCCCCEEEeCCC---------CCH---HHHHHHHHCCCCEEEEeH
Confidence 7888863 211122222 221 22223344468999986543 344 455555668999999963
No 100
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=86.06 E-value=12 Score=36.34 Aligned_cols=105 Identities=13% Similarity=0.132 Sum_probs=68.7
Q ss_pred HHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEe-eecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCCC
Q 008172 268 WDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLA-KIENLESLQKFEEIVEA-SDGIMVARGDLGVDIP 345 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIa-KIEt~~av~nldeI~~~-sDgImIaRGDLg~e~~ 345 (575)
.+.++.+++.|++.|-+.+ ++......++.+....+ ++.|-+ -|=+. +++++.++. +|+++.+-.|
T Consensus 19 ~~~~~~l~~~G~~~vev~~-~~~~~~~~i~~l~~~~~--~~~iGag~v~~~---~~~~~a~~~Ga~~i~~p~~~------ 86 (190)
T cd00452 19 LALAEALIEGGIRAIEITL-RTPGALEAIRALRKEFP--EALIGAGTVLTP---EQADAAIAAGAQFIVSPGLD------ 86 (190)
T ss_pred HHHHHHHHHCCCCEEEEeC-CChhHHHHHHHHHHHCC--CCEEEEEeCCCH---HHHHHHHHcCCCEEEcCCCC------
Confidence 3445667889999999986 67767666666554432 333222 22222 356666666 8999754222
Q ss_pred CCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEecc
Q 008172 346 LEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSG 406 (575)
Q Consensus 346 ~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ 406 (575)
..+++.|+..|.|++. ..+-.+++..|...|+|.+.+..
T Consensus 87 --------~~~~~~~~~~~~~~i~--------------gv~t~~e~~~A~~~Gad~i~~~p 125 (190)
T cd00452 87 --------PEVVKAANRAGIPLLP--------------GVATPTEIMQALELGADIVKLFP 125 (190)
T ss_pred --------HHHHHHHHHcCCcEEC--------------CcCCHHHHHHHHHCCCCEEEEcC
Confidence 4688899999999874 12233556778889999999953
No 101
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=86.01 E-value=17 Score=38.75 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=78.0
Q ss_pred HHHHHHHHcCCCEEEecCcC--C-----h----hhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-----CCE
Q 008172 269 DDIEFGIAEGVDFIAMSFVC--D-----A----DSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-----SDG 332 (575)
Q Consensus 269 ~di~~al~~gvd~I~~SfV~--s-----a----~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-----sDg 332 (575)
+.++.+.+.|+|+|-+.+-. . . +.+.++-+.+.+. -++.|++|+ ++ .+.++.++++. +||
T Consensus 118 ~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~--~~iPV~vKl-~p-~~~~~~~~a~~l~~~G~dg 193 (334)
T PRK07565 118 DYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSA--VSIPVAVKL-SP-YFSNLANMAKRLDAAGADG 193 (334)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhc--cCCcEEEEe-CC-CchhHHHHHHHHHHcCCCe
Confidence 33444556799999874321 1 1 1122222333322 247899997 32 23344455443 798
Q ss_pred EEEeCCCCCCCCCC--------------CChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcc
Q 008172 333 IMVARGDLGVDIPL--------------EQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQY 398 (575)
Q Consensus 333 ImIaRGDLg~e~~~--------------e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G 398 (575)
|.+.-.=.+..+.. .-.+...+.+-+.....+.|+|...-+- -..|+..++..|
T Consensus 194 I~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~------------s~~Da~e~l~aG 261 (334)
T PRK07565 194 LVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVH------------DAEDVIKMLLAG 261 (334)
T ss_pred EEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCC------------CHHHHHHHHHcC
Confidence 87632212221111 2234445544444455589988755433 346788899999
Q ss_pred cceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhh
Q 008172 399 ADALMLSGESAIGPFGQKAVSVLQMASSRMELWSR 433 (575)
Q Consensus 399 ~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 433 (575)
||+|++...--.. -| +++.+|+++-+.|..
T Consensus 262 A~~V~v~t~~~~~-g~----~~~~~i~~~L~~~l~ 291 (334)
T PRK07565 262 ADVVMIASALLRH-GP----DYIGTILRGLEDWME 291 (334)
T ss_pred CCceeeehHHhhh-Cc----HHHHHHHHHHHHHHH
Confidence 9999998443331 13 455666666666543
No 102
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=85.88 E-value=14 Score=34.99 Aligned_cols=120 Identities=18% Similarity=0.146 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCC-CceEEeeecC-------HHHHhcHHHHHhc-CCEEEEeCC
Q 008172 268 WDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSR-SIKVLAKIEN-------LESLQKFEEIVEA-SDGIMVARG 338 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~-~i~IIaKIEt-------~~av~nldeI~~~-sDgImIaRG 338 (575)
.+.+++.++.|+|+|.+.- +-++.+++... . ++.+++++=. .+.++..++-.+. +|++++..-
T Consensus 16 ~~~~~~~~~~gv~gi~~~g----~~i~~~~~~~~----~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~ 87 (201)
T cd00945 16 AKLCDEAIEYGFAAVCVNP----GYVRLAADALA----GSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVIN 87 (201)
T ss_pred HHHHHHHHHhCCcEEEECH----HHHHHHHHHhC----CCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEecc
Confidence 3455788899999998886 44555555442 3 5788999854 4577777777776 899998521
Q ss_pred CCCCCCC--CCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCC--ChhhHhhHHH-HHHcccceEEec
Q 008172 339 DLGVDIP--LEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTP--TRAEVADVSE-AVRQYADALMLS 405 (575)
Q Consensus 339 DLg~e~~--~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~P--trAEv~Dv~n-av~~G~D~vmLs 405 (575)
.....+ .+.+...-+.+.+.| +.+.|+++-. .|.- +..++...+. +...|+|++=.+
T Consensus 88 -~~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~--------~p~~~~~~~~~~~~~~~~~~~g~~~iK~~ 149 (201)
T cd00945 88 -IGSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVIL--------ETRGLKTADEIAKAARIAAEAGADFIKTS 149 (201)
T ss_pred -HHHHhCCCHHHHHHHHHHHHHHh-cCCceEEEEE--------ECCCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 111111 233334444555555 4699999742 1222 2334444433 345799998765
No 103
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=85.85 E-value=20 Score=36.35 Aligned_cols=143 Identities=10% Similarity=0.112 Sum_probs=87.6
Q ss_pred CCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCC
Q 008172 263 LSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGV 342 (575)
Q Consensus 263 lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~ 342 (575)
+.+.=...+..-.+.|+|+|.+-+ ++..++.++-+.+++.| ....+.-+=+| -++.+..++...|.|+| +++
T Consensus 70 Mv~~P~~~i~~~~~~gad~I~~H~-Ea~~~~~~~l~~Ir~~g-~k~GlalnP~T--~~~~i~~~l~~vD~Vlv----MtV 141 (223)
T PRK08745 70 MVEPVDRIVPDFADAGATTISFHP-EASRHVHRTIQLIKSHG-CQAGLVLNPAT--PVDILDWVLPELDLVLV----MSV 141 (223)
T ss_pred ccCCHHHHHHHHHHhCCCEEEEcc-cCcccHHHHHHHHHHCC-CceeEEeCCCC--CHHHHHHHHhhcCEEEE----EEE
Confidence 343334556666789999987755 54467777777888777 56788888887 57889999999999998 344
Q ss_pred CCCC---CChHHHHHHHH---HHHHHcCCCE--EEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCH
Q 008172 343 DIPL---EQIPTVQEIII---HVCRQLNKPV--IVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFG 414 (575)
Q Consensus 343 e~~~---e~v~~~Qk~Ii---~~c~~~gKPv--ivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yP 414 (575)
+-|. .-++..-++|- +...+++..+ -+.. .=+. .-+......|+|.+++.+--.....|
T Consensus 142 ~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDG----------GI~~---eti~~l~~aGaDi~V~GSaiF~~~d~ 208 (223)
T PRK08745 142 NPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDG----------GVKA---DNIGAIAAAGADTFVAGSAIFNAPDY 208 (223)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEEC----------CCCH---HHHHHHHHcCCCEEEEChhhhCCCCH
Confidence 4443 22232223222 2223345443 3321 1111 22345667899999885322112358
Q ss_pred HHHHHHHHHHHH
Q 008172 415 QKAVSVLQMASS 426 (575)
Q Consensus 415 veaV~~m~~I~~ 426 (575)
.++++.|++...
T Consensus 209 ~~~~~~lr~~~~ 220 (223)
T PRK08745 209 AQVIAQMRAAVA 220 (223)
T ss_pred HHHHHHHHHHHH
Confidence 888888876543
No 104
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=85.79 E-value=9.7 Score=43.73 Aligned_cols=150 Identities=9% Similarity=0.122 Sum_probs=99.0
Q ss_pred HHHHHHHHHcCCCEE--EecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCC--
Q 008172 268 WDDIEFGIAEGVDFI--AMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVD-- 343 (575)
Q Consensus 268 ~~di~~al~~gvd~I--~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e-- 343 (575)
.+.|....+.|+|.| +++-.+.|+.+.++++.+...| -++.++|-|-----+ .+. -++.+|.|=|.||.++-.
T Consensus 44 v~Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G-~~iPLVADIHF~~~~-A~~-a~~~v~kiRINPGN~~~~~k 120 (611)
T PRK02048 44 VAQAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQG-YMVPLVADVHFNPKV-ADV-AAQYAEKVRINPGNYVDPGR 120 (611)
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcC-CCCCEEEecCCCcHH-HHH-HHHhhCCEEECCCcCCCccc
Confidence 344556678899995 5666667777777777777776 569999999432222 122 223399999999999874
Q ss_pred -C------------CCCChHHHHHHHHHHHHHcCCCEEEehh-------hHHhhhcCCCCChhhH-----hhHHHHHHcc
Q 008172 344 -I------------PLEQIPTVQEIIIHVCRQLNKPVIVASQ-------LLESMVEYPTPTRAEV-----ADVSEAVRQY 398 (575)
Q Consensus 344 -~------------~~e~v~~~Qk~Ii~~c~~~gKPvivaTq-------~LeSM~~~p~PtrAEv-----~Dv~nav~~G 398 (575)
+ .++++..--+.++++|+++|+|+=+-++ +++..- +|..-+ .-+--+-..|
T Consensus 121 ~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~yg----~tpe~mVeSAle~~~i~e~~~ 196 (611)
T PRK02048 121 TFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRYG----DTPEGMVESCMEFLRICVEEH 196 (611)
T ss_pred cccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhC----CChHHHHHHHHHHHHHHHHCC
Confidence 1 1245555666899999999999977663 444321 233222 2223366789
Q ss_pred cceEEeccCcCCCCCHHHHHHHHHHH
Q 008172 399 ADALMLSGESAIGPFGQKAVSVLQMA 424 (575)
Q Consensus 399 ~D~vmLs~ETa~G~yPveaV~~m~~I 424 (575)
++=+.+|--.+.-..++.+.+.+..-
T Consensus 197 f~diviS~KsS~~~~~V~AyRlLa~~ 222 (611)
T PRK02048 197 FTDVVISIKASNTVVMVRTVRLLVAV 222 (611)
T ss_pred CCcEEEEEEeCCcHHHHHHHHHHHHH
Confidence 99999998887776666666655543
No 105
>PRK07695 transcriptional regulator TenI; Provisional
Probab=85.71 E-value=21 Score=34.87 Aligned_cols=131 Identities=11% Similarity=0.065 Sum_probs=77.4
Q ss_pred HHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCCCCCCh
Q 008172 271 IEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARGDLGVDIPLEQI 349 (575)
Q Consensus 271 i~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGDLg~e~~~e~v 349 (575)
...+++.|+|++-++.- ...+.++|+.+ .+..|-+.+.+.+- +.+..+. +|.+++++-.-+..-+-...
T Consensus 66 ~~la~~~~~~gvHl~~~--~~~~~~~r~~~-----~~~~ig~s~~s~e~---a~~a~~~Gadyi~~g~v~~t~~k~~~~~ 135 (201)
T PRK07695 66 VDIALLLNIHRVQLGYR--SFSVRSVREKF-----PYLHVGYSVHSLEE---AIQAEKNGADYVVYGHVFPTDCKKGVPA 135 (201)
T ss_pred HHHHHHcCCCEEEeCcc--cCCHHHHHHhC-----CCCEEEEeCCCHHH---HHHHHHcCCCEEEECCCCCCCCCCCCCC
Confidence 45688899999988863 22355556543 13445555555432 3333333 89999876443321111000
Q ss_pred HHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHH
Q 008172 350 PTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMAS 425 (575)
Q Consensus 350 ~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~ 425 (575)
.--+.+-+.+...++|++.+..+ +. .++..+...|+|++.+.+.-.....|.++++.+.++.
T Consensus 136 -~g~~~l~~~~~~~~ipvia~GGI----------~~---~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~ 197 (201)
T PRK07695 136 -RGLEELSDIARALSIPVIAIGGI----------TP---ENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESI 197 (201)
T ss_pred -CCHHHHHHHHHhCCCCEEEEcCC----------CH---HHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHH
Confidence 01122223344558999976432 22 3456667899999999877776678999988777654
No 106
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=85.49 E-value=16 Score=39.42 Aligned_cols=154 Identities=12% Similarity=0.115 Sum_probs=97.5
Q ss_pred CCCccCHHHHHHH-HHcCCCEEEecC-cCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEE--e
Q 008172 262 TLSKKDWDDIEFG-IAEGVDFIAMSF-VCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMV--A 336 (575)
Q Consensus 262 ~lsekD~~di~~a-l~~gvd~I~~Sf-V~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImI--a 336 (575)
.+|..++..|... .+.|+|.|=+.| +.+.++.+.++.+.+. + .+..+.+-+-. -.+.++..++. .|.|.+ +
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~-~-~~~~v~~~~r~--~~~di~~a~~~g~~~i~i~~~ 93 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQE-G-LNAEICSLARA--LKKDIDKAIDCGVDSIHTFIA 93 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHhc-C-CCcEEEEEccc--CHHHHHHHHHcCcCEEEEEEc
Confidence 4666776666554 569999998754 5667777666666543 3 34566655531 12334444444 676655 2
Q ss_pred CCCCC----CCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHcccceEEeccCcCCC
Q 008172 337 RGDLG----VDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQYADALMLSGESAIG 411 (575)
Q Consensus 337 RGDLg----~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~G~D~vmLs~ETa~G 411 (575)
=.|+- .....++........++.++++|..|.+.. ....+-+.+.+.+++. +...|+|.+.|. +|.=.
T Consensus 94 ~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~------eda~r~~~~~l~~~~~~~~~~g~~~i~l~-DT~G~ 166 (363)
T TIGR02090 94 TSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSA------EDATRTDIDFLIKVFKRAEEAGADRINIA-DTVGV 166 (363)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEE------eecCCCCHHHHHHHHHHHHhCCCCEEEEe-CCCCc
Confidence 12221 012234445556688899999999887653 2334556666777666 466799999998 78888
Q ss_pred CCHHHHHHHHHHHHH
Q 008172 412 PFGQKAVSVLQMASS 426 (575)
Q Consensus 412 ~yPveaV~~m~~I~~ 426 (575)
.+|-+.-+.++.+.+
T Consensus 167 ~~P~~v~~li~~l~~ 181 (363)
T TIGR02090 167 LTPQKMEELIKKLKE 181 (363)
T ss_pred cCHHHHHHHHHHHhc
Confidence 899988887776643
No 107
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=85.42 E-value=18 Score=36.51 Aligned_cols=143 Identities=14% Similarity=0.116 Sum_probs=89.9
Q ss_pred CCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCC
Q 008172 262 TLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLG 341 (575)
Q Consensus 262 ~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg 341 (575)
-+.+.=...+..-.+.|+|+|.+- +++..++.++-+.+++.| ....+.-+=+| -++.++.+++..|.+++ ++
T Consensus 65 LMv~~p~~~i~~~~~~gad~i~~H-~Ea~~~~~~~l~~ik~~g-~k~GlalnP~T--p~~~i~~~l~~~D~vlv----Mt 136 (220)
T PRK08883 65 LMVKPVDRIIPDFAKAGASMITFH-VEASEHVDRTLQLIKEHG-CQAGVVLNPAT--PLHHLEYIMDKVDLILL----MS 136 (220)
T ss_pred eccCCHHHHHHHHHHhCCCEEEEc-ccCcccHHHHHHHHHHcC-CcEEEEeCCCC--CHHHHHHHHHhCCeEEE----EE
Confidence 344443456666788999998665 466677878888888887 56778877777 67889999999999998 33
Q ss_pred CCCCC---CChHHHHHHHHHH---HHHcC--CCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCC
Q 008172 342 VDIPL---EQIPTVQEIIIHV---CRQLN--KPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPF 413 (575)
Q Consensus 342 ~e~~~---e~v~~~Qk~Ii~~---c~~~g--KPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~y 413 (575)
++-|. .-++..-++|-+. ..++| .|+.+..- =+. ..+...+..|+|++...+--...+.
T Consensus 137 V~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGG----------I~~---eni~~l~~aGAd~vVvGSaIf~~~d 203 (220)
T PRK08883 137 VNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGG----------VKV---DNIREIAEAGADMFVAGSAIFGQPD 203 (220)
T ss_pred ecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECC----------CCH---HHHHHHHHcCCCEEEEeHHHhCCCC
Confidence 33332 2233333333222 22233 66655321 122 2345667799999988644322345
Q ss_pred HHHHHHHHHHHH
Q 008172 414 GQKAVSVLQMAS 425 (575)
Q Consensus 414 PveaV~~m~~I~ 425 (575)
|.++++.+++..
T Consensus 204 ~~~~i~~l~~~~ 215 (220)
T PRK08883 204 YKAVIDEMRAEL 215 (220)
T ss_pred HHHHHHHHHHHH
Confidence 888888777543
No 108
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=85.26 E-value=12 Score=38.73 Aligned_cols=119 Identities=13% Similarity=0.211 Sum_probs=78.6
Q ss_pred HHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCCh
Q 008172 270 DIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQI 349 (575)
Q Consensus 270 di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v 349 (575)
-++.+.+.|+|++++|-.- .|+-.++++.+.+.| +..|.-|=-...-+.+..|++.++|.+=.-+=.|+.=.-..+
T Consensus 107 F~~~~~~aGvdGlIipDLP-~ee~~~~~~~~~~~g---l~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~ 182 (259)
T PF00290_consen 107 FFKEAKEAGVDGLIIPDLP-PEESEELREAAKKHG---LDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSRTEL 182 (259)
T ss_dssp HHHHHHHHTEEEEEETTSB-GGGHHHHHHHHHHTT----EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSC
T ss_pred HHHHHHHcCCCEEEEcCCC-hHHHHHHHHHHHHcC---CeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccc
Confidence 3566788999999999886 577788888888776 344444434355678999999988876554445542222456
Q ss_pred HHHHHHHHHHHHHc-CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 350 PTVQEIIIHVCRQL-NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 350 ~~~Qk~Ii~~c~~~-gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
+.-.+..++..+++ .+|+.+-- ..-|++.+. .. ..|+|++...
T Consensus 183 ~~~l~~~i~~ik~~~~~Pv~vGF---------GI~~~e~~~---~~-~~~aDGvIVG 226 (259)
T PF00290_consen 183 PDELKEFIKRIKKHTDLPVAVGF---------GISTPEQAK---KL-AAGADGVIVG 226 (259)
T ss_dssp HHHHHHHHHHHHHTTSS-EEEES---------SS-SHHHHH---HH-HTTSSEEEES
T ss_pred hHHHHHHHHHHHhhcCcceEEec---------CCCCHHHHH---HH-HccCCEEEEC
Confidence 67677888888876 59998742 344554333 33 4999999975
No 109
>PLN02334 ribulose-phosphate 3-epimerase
Probab=85.18 E-value=32 Score=34.49 Aligned_cols=138 Identities=12% Similarity=0.164 Sum_probs=77.1
Q ss_pred HHHHHHHcCCCEEEecCcC-ChhhH-HHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc--CCEEEEeCCCCCCCCC
Q 008172 270 DIEFGIAEGVDFIAMSFVC-DADSV-RHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA--SDGIMVARGDLGVDIP 345 (575)
Q Consensus 270 di~~al~~gvd~I~~SfV~-sa~dv-~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~--sDgImIaRGDLg~e~~ 345 (575)
.+..+.+.|+|+|.+..-+ ..+.. ..++. +...| ..+.+...=.| -++.+.++++. +|.|+++.-.=|..=
T Consensus 80 ~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~-i~~~g-~~iGls~~~~t--~~~~~~~~~~~~~~Dyi~~~~v~pg~~~- 154 (229)
T PLN02334 80 YVPDFAKAGASIFTFHIEQASTIHLHRLIQQ-IKSAG-MKAGVVLNPGT--PVEAVEPVVEKGLVDMVLVMSVEPGFGG- 154 (229)
T ss_pred HHHHHHHcCCCEEEEeeccccchhHHHHHHH-HHHCC-CeEEEEECCCC--CHHHHHHHHhccCCCEEEEEEEecCCCc-
Confidence 4567789999999777663 22333 33444 33343 23444432123 35567788888 999988543321111
Q ss_pred CCCh-HHHHHHHHHHHHHc--CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHH
Q 008172 346 LEQI-PTVQEIIIHVCRQL--NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQ 422 (575)
Q Consensus 346 ~e~v-~~~Qk~Ii~~c~~~--gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~ 422 (575)
+.. +..-+++ +..++. ++|+.+..-+ |.. ++......|+|++...+--..-+.|.++++.+.
T Consensus 155 -~~~~~~~~~~i-~~~~~~~~~~~I~a~GGI----------~~e---~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l~ 219 (229)
T PLN02334 155 -QSFIPSMMDKV-RALRKKYPELDIEVDGGV----------GPS---TIDKAAEAGANVIVAGSAVFGAPDYAEVISGLR 219 (229)
T ss_pred -cccCHHHHHHH-HHHHHhCCCCcEEEeCCC----------CHH---HHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHH
Confidence 212 2222333 333333 5676654322 222 446667799999998765443457888888777
Q ss_pred HHHHH
Q 008172 423 MASSR 427 (575)
Q Consensus 423 ~I~~~ 427 (575)
+..++
T Consensus 220 ~~~~~ 224 (229)
T PLN02334 220 ASVEK 224 (229)
T ss_pred HHHHH
Confidence 65433
No 110
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=84.83 E-value=3.5 Score=44.35 Aligned_cols=211 Identities=16% Similarity=0.205 Sum_probs=122.5
Q ss_pred cCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHH-------------------------HhccCCCCceEEeeecCHHHH
Q 008172 266 KDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKY-------------------------VSGKSSRSIKVLAKIENLESL 320 (575)
Q Consensus 266 kD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~-------------------------l~~~~~~~i~IIaKIEt~~av 320 (575)
.+++.+.-|++.|+|.|+++- +++..++++ +...+ +.+.....|.+.+-+
T Consensus 13 ~~k~~vt~AlEsGvd~vv~~~----~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~v~i~~~~~~ 87 (354)
T PF01959_consen 13 ERKEVVTAALESGVDGVVVDD----EDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEG-KEVGVYVEITDKEDE 87 (354)
T ss_pred hHHHHHHHHHHcCCCEEEECH----hHhhhhhccceEEEEeccccccCCccccchhhhhhhccC-ceEEEEEEECCHHHH
Confidence 446777889999999998874 333333322 11112 456689999999999
Q ss_pred hcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccc
Q 008172 321 QKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYAD 400 (575)
Q Consensus 321 ~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D 400 (575)
+..-+..+..|.+++--.|.. -+|+|+ +|.+....+.-++.. ..+-+|..=...+...|+|
T Consensus 88 ~~a~~~~~~~~~~iv~~~Dw~-iIPlEn-------liA~~~~~~~~i~a~-----------v~~~~eA~~~~~~LE~G~d 148 (354)
T PF01959_consen 88 EEACELAKRADYVIVEFRDWT-IIPLEN-------LIAALQGSSTKIIAV-----------VADAEEARVALEVLEKGVD 148 (354)
T ss_pred HHHHHHhccCCeEEEEcCCCc-EecHHH-------HHHHhcCCCceEEEE-----------eCCHHHHHHHHHHHhcCCC
Confidence 999999998999888755553 356555 444444444444432 3556666667889999999
Q ss_pred eEEeccCcCCCCCHHHHHHHHHHHHHHH--hhhhhhh-hhH--Hhh------h-cccccCCCCC----Cch--------h
Q 008172 401 ALMLSGESAIGPFGQKAVSVLQMASSRM--ELWSREE-NRQ--SAL------C-GQRQLGESLH----DRI--------A 456 (575)
Q Consensus 401 ~vmLs~ETa~G~yPveaV~~m~~I~~~a--E~~~~~~-~~~--~~~------~-~~~~~~~~~~----~~~--------~ 456 (575)
+|+|..+ -|-+ ++-+...+.+. |+..... ..- +.. | +...+..+-. .+. +
T Consensus 149 GVll~~~-----d~~e-i~~~~~~~~~~~~~~l~L~~a~Vt~V~~vGmGdRVCVDtcsll~~gEGmLVGs~s~glfLVhs 222 (354)
T PF01959_consen 149 GVLLDPD-----DPAE-IKALVALLKERSQEKLELVPATVTRVEPVGMGDRVCVDTCSLLRPGEGMLVGSSSSGLFLVHS 222 (354)
T ss_pred eEEECCC-----CHHH-HHHHHHHHhhccCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCCeEEEcccCceEEEEEe
Confidence 9999866 3433 33344444442 2211000 000 000 0 0000000000 000 0
Q ss_pred hHHHHH-HHHHHHhcCCcEEEEEcCC-hhHHHHHhccCCCCcEEEEcCcHHH
Q 008172 457 EQICNC-AVDMANNLGVDAIFVYTKH-GHMASLLSRNRPNPPIFAFTNDDST 506 (575)
Q Consensus 457 ~~ia~~-av~~a~~~~AkaIVVfT~S-G~TAr~VSr~RP~~PIiAvT~~~~~ 506 (575)
++..+. ...--++.||-++=.|+.. |...+++|-.+.--.|+++-.+-++
T Consensus 223 Et~~~pYva~RPFRVNAGaVHaYv~~pg~kT~YLSEL~sG~~VlvVd~~G~t 274 (354)
T PF01959_consen 223 ETHESPYVASRPFRVNAGAVHAYVLMPGGKTRYLSELRSGDEVLVVDADGRT 274 (354)
T ss_pred ccccCCCCCCCCceEecCcceeEEEcCCCceeehhhhcCCCEEEEEeCCCCE
Confidence 000000 0012356788887778777 7788899999999999999877553
No 111
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=83.87 E-value=27 Score=38.44 Aligned_cols=137 Identities=17% Similarity=0.202 Sum_probs=82.0
Q ss_pred HHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEe-eecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCCCCC
Q 008172 270 DIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLA-KIENLESLQKFEEIVEA-SDGIMVARGDLGVDIPLE 347 (575)
Q Consensus 270 di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIa-KIEt~~av~nldeI~~~-sDgImIaRGDLg~e~~~e 347 (575)
+++.+.+.|+|+|.++.-.+...+.++.+.+++.| ..++. -+-....++.+.+..+. +|.|-+.+|--+...+..
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G---~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~~ 149 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYG---VRLMADLINVPDPVKRAVELEELGVDYINVHVGIDQQMLGKD 149 (430)
T ss_pred HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcC---CEEEEEecCCCCHHHHHHHHHhcCCCEEEEEeccchhhcCCC
Confidence 77889999999998764333334666666666655 23333 12212234556666666 899988876433223221
Q ss_pred ChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHH
Q 008172 348 QIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASS 426 (575)
Q Consensus 348 ~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~ 426 (575)
.....+++. ...+.|+.+..-+ +. ..+..++..|+|++.+.+.-..-.-|.++++.+++.++
T Consensus 150 -~~~~l~~l~---~~~~iPI~a~GGI----------~~---~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~ 211 (430)
T PRK07028 150 -PLELLKEVS---EEVSIPIAVAGGL----------DA---ETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAID 211 (430)
T ss_pred -hHHHHHHHH---hhCCCcEEEECCC----------CH---HHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHh
Confidence 122223332 2346888775421 22 33566788999999987665545568888887776553
No 112
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=83.81 E-value=2.7 Score=40.19 Aligned_cols=104 Identities=15% Similarity=0.127 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEcCChhHHHHHhccCCC-CcEEEEcCcH-----------HHHHHhcccCCcEEEE---
Q 008172 456 AEQICNCAVDMANNLGVDAIFVYTKHGHMASLLSRNRPN-PPIFAFTNDD-----------STRMALNLQWGVIPVL--- 520 (575)
Q Consensus 456 ~~~ia~~av~~a~~~~AkaIVVfT~SG~TAr~VSr~RP~-~PIiAvT~~~-----------~~aR~L~L~~GV~Pvl--- 520 (575)
++..-.-|++-|.+++.+-|||.+.||+||++++.+-|. ..++.||+.. .-+|..-.-+|..-+-
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~sH 91 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQSH 91 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeehh
Confidence 567778889999999999999999999999999999987 7999998643 2233333445544332
Q ss_pred ---------ecCCC--CHHHHHHHHHH--------------HHHHcCCCCCCCEEEEEecCCCC
Q 008172 521 ---------VNLSD--DMETNIAKTID--------------LIKMKGMVKYGDAVLVVLDLTPA 559 (575)
Q Consensus 521 ---------~~~~~--d~d~~i~~al~--------------~~~~~g~~k~GD~VVvv~G~~~~ 559 (575)
...+- +.-+.|...+. .+-+.|++.....|+-+.|..+|
T Consensus 92 alSg~eRsis~kfGG~~p~eiiAetLR~fg~G~KVcvEItiMAaDaGlIp~~eeViAiGGt~~G 155 (186)
T COG1751 92 ALSGVERSISRKFGGYSPLEIIAETLRMFGQGVKVCVEITIMAADAGLIPVSEEVIAIGGTERG 155 (186)
T ss_pred hhhcchhhhhhhcCCcchHHHHHHHHHHhcCCcEEEEEEEEEeccCCCcccceeEEEecccccC
Confidence 11111 22333444443 12255667777888888877665
No 113
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=83.76 E-value=15 Score=35.62 Aligned_cols=115 Identities=16% Similarity=0.176 Sum_probs=67.5
Q ss_pred ccCHHHHHHHHHcCCCEEEe--cCcCC--hhhHHHHHHHHhccCCCCceEEe--eecCHHHHhcHHHHHhc-CCEEEEeC
Q 008172 265 KKDWDDIEFGIAEGVDFIAM--SFVCD--ADSVRHLKKYVSGKSSRSIKVLA--KIENLESLQKFEEIVEA-SDGIMVAR 337 (575)
Q Consensus 265 ekD~~di~~al~~gvd~I~~--SfV~s--a~dv~~ir~~l~~~~~~~i~IIa--KIEt~~av~nldeI~~~-sDgImIaR 337 (575)
..+...+-.++..++++|=+ +|++. .+.++.+++.. .+..+++ |+.+.. -..+++..+. +|++.+-
T Consensus 12 ~~~~~~~~~~l~~~i~~ieig~~~~~~~g~~~i~~i~~~~-----~~~~i~~~~~v~~~~-~~~~~~~~~aGad~i~~h- 84 (202)
T cd04726 12 LEEALELAKKVPDGVDIIEAGTPLIKSEGMEAVRALREAF-----PDKIIVADLKTADAG-ALEAEMAFKAGADIVTVL- 84 (202)
T ss_pred HHHHHHHHHHhhhcCCEEEcCCHHHHHhCHHHHHHHHHHC-----CCCEEEEEEEecccc-HHHHHHHHhcCCCEEEEE-
Confidence 34444455555545999877 56532 34444444432 2345555 666652 1224565665 8998883
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 338 GDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 338 GDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
.+..+...+++++.|+++|++++++. |+.....++..+...|+|.+.+.
T Consensus 85 --------~~~~~~~~~~~i~~~~~~g~~~~v~~-----------~~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 85 --------GAAPLSTIKKAVKAAKKYGKEVQVDL-----------IGVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred --------eeCCHHHHHHHHHHHHHcCCeEEEEE-----------eCCCCHHHHHHHHHCCCCEEEEc
Confidence 22233456789999999999999741 21112233345777899998883
No 114
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=83.51 E-value=38 Score=34.59 Aligned_cols=153 Identities=10% Similarity=0.069 Sum_probs=91.6
Q ss_pred CCCccCHHHH-HHHHHcCCCEEEecCcCCh-hhHHHHHHHHhccCCCCceEEeee-cCHHHHhcHHHHHhc-CCEEEEe-
Q 008172 262 TLSKKDWDDI-EFGIAEGVDFIAMSFVCDA-DSVRHLKKYVSGKSSRSIKVLAKI-ENLESLQKFEEIVEA-SDGIMVA- 336 (575)
Q Consensus 262 ~lsekD~~di-~~al~~gvd~I~~SfV~sa-~dv~~ir~~l~~~~~~~i~IIaKI-Et~~av~nldeI~~~-sDgImIa- 336 (575)
.+|..++..+ +...+.|++.|=+.|-... .+.+.++.+.+ .+ .+..+.+-. -+.+++ +...+. .|.|-+.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~-~~-~~~~~~~~~r~~~~~v---~~a~~~g~~~i~i~~ 90 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVA-LG-LPARLIVWCRAVKEDI---EAALRCGVTAVHISI 90 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHh-cC-CCCEEEEeccCCHHHH---HHHHhCCcCEEEEEE
Confidence 4566666555 4455799999987665443 33344555443 22 234444433 234444 343443 5666553
Q ss_pred -CCCC----CCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHH-HHcccceEEeccCcCC
Q 008172 337 -RGDL----GVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEA-VRQYADALMLSGESAI 410 (575)
Q Consensus 337 -RGDL----g~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~na-v~~G~D~vmLs~ETa~ 410 (575)
-.|. -.....+......+.+++.|++.|..|.+.. ...++-+.+++.+++.. ...|+|.+.|. +|.=
T Consensus 91 ~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l~-DT~G 163 (259)
T cd07939 91 PVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA------EDASRADPDFLIEFAEVAQEAGADRLRFA-DTVG 163 (259)
T ss_pred ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee------ccCCCCCHHHHHHHHHHHHHCCCCEEEeC-CCCC
Confidence 0010 0011123334455688999999999877532 23445667778877774 56799999997 8888
Q ss_pred CCCHHHHHHHHHHHHH
Q 008172 411 GPFGQKAVSVLQMASS 426 (575)
Q Consensus 411 G~yPveaV~~m~~I~~ 426 (575)
.-+|.+.-+.++.+.+
T Consensus 164 ~~~P~~v~~lv~~l~~ 179 (259)
T cd07939 164 ILDPFTTYELIRRLRA 179 (259)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8999888777776653
No 115
>PRK00915 2-isopropylmalate synthase; Validated
Probab=83.47 E-value=38 Score=38.48 Aligned_cols=155 Identities=13% Similarity=0.158 Sum_probs=98.1
Q ss_pred CCCccCHHHHHHH-HHcCCCEEEecC-cCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc---C--CE--
Q 008172 262 TLSKKDWDDIEFG-IAEGVDFIAMSF-VCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA---S--DG-- 332 (575)
Q Consensus 262 ~lsekD~~di~~a-l~~gvd~I~~Sf-V~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~---s--Dg-- 332 (575)
.+|..++..|-.. .+.|+|.|=+.| ..++.|...++.+.... ++..+.+-.-.. .+++|..++. + +.
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~~--~~~~i~a~~r~~--~~did~a~~a~~~~~~~~v~ 97 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIARTV--KNSTVCGLARAV--KKDIDAAAEALKPAEAPRIH 97 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHhhC--CCCEEEEEccCC--HHHHHHHHHHhhcCCCCEEE
Confidence 4677777655554 469999998877 56788888887765432 345555544221 2334444422 2 22
Q ss_pred EEEeCCCCCC----CCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHH-HHcccceEEeccC
Q 008172 333 IMVARGDLGV----DIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEA-VRQYADALMLSGE 407 (575)
Q Consensus 333 ImIaRGDLg~----e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~na-v~~G~D~vmLs~E 407 (575)
++++-.|+-+ ....+++....++.++.|+++|.-|.+..+ ...+-+...+.+++.+ ...|+|.+.|. +
T Consensus 98 i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~e------d~~r~d~~~l~~~~~~~~~~Ga~~i~l~-D 170 (513)
T PRK00915 98 TFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAE------DATRTDLDFLCRVVEAAIDAGATTINIP-D 170 (513)
T ss_pred EEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeC------CCCCCCHHHHHHHHHHHHHcCCCEEEEc-c
Confidence 4444334321 222355555567889999999998876432 2233344446666664 45699999998 8
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 008172 408 SAIGPFGQKAVSVLQMASSR 427 (575)
Q Consensus 408 Ta~G~yPveaV~~m~~I~~~ 427 (575)
|.=+..|.+.-++++.+.+.
T Consensus 171 TvG~~~P~~~~~~i~~l~~~ 190 (513)
T PRK00915 171 TVGYTTPEEFGELIKTLRER 190 (513)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99899999998888777544
No 116
>PRK06852 aldolase; Validated
Probab=83.28 E-value=33 Score=36.46 Aligned_cols=109 Identities=11% Similarity=0.049 Sum_probs=59.2
Q ss_pred CCChhhHhhHHHHHHcc------cceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCCCCC-c
Q 008172 382 TPTRAEVADVSEAVRQY------ADALMLSGESAIGPFGQKAVSVLQMASSRMELWSREENRQSALCGQRQLGESLHD-R 454 (575)
Q Consensus 382 ~PtrAEv~Dv~nav~~G------~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~-~ 454 (575)
.|...-+++|-.|+..| +|||..+-=-. +.+=-+.++.+.++++++++|=.-.- ... ++. ...... .
T Consensus 112 ~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~G-s~~E~~ml~~l~~v~~ea~~~GlPll--~~~--ypr-G~~i~~~~ 185 (304)
T PRK06852 112 DPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLG-SEYESEMLSEAAQIIYEAHKHGLIAV--LWI--YPR-GKAVKDEK 185 (304)
T ss_pred CccccceecHHHHHhcCCccCCCceEEEEEEecC-CHHHHHHHHHHHHHHHHHHHhCCcEE--EEe--ecc-CcccCCCc
Confidence 45555578899999999 88988752211 23335677777777778877621100 000 000 111111 1
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEcCC-----h--hHHHHHhccCCCCcEE
Q 008172 455 IAEQICNCAVDMANNLGVDAIFVYTKH-----G--HMASLLSRNRPNPPIF 498 (575)
Q Consensus 455 ~~~~ia~~av~~a~~~~AkaIVVfT~S-----G--~TAr~VSr~RP~~PIi 498 (575)
..+ +...|+++|.+++|+.| =...+ | .+-+.+-..-.++||+
T Consensus 186 ~~~-~ia~aaRiaaELGADIV-Kv~y~~~~~~g~~e~f~~vv~~~g~vpVv 234 (304)
T PRK06852 186 DPH-LIAGAAGVAACLGADFV-KVNYPKKEGANPAELFKEAVLAAGRTKVV 234 (304)
T ss_pred cHH-HHHHHHHHHHHHcCCEE-EecCCCcCCCCCHHHHHHHHHhCCCCcEE
Confidence 224 44455699999999944 33333 3 3444555555335643
No 117
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=83.19 E-value=28 Score=36.24 Aligned_cols=139 Identities=18% Similarity=0.214 Sum_probs=74.6
Q ss_pred HHHHHcC-CCEEEe------------cCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-----CCEE
Q 008172 272 EFGIAEG-VDFIAM------------SFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-----SDGI 333 (575)
Q Consensus 272 ~~al~~g-vd~I~~------------SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-----sDgI 333 (575)
+.+.+.| +|+|=+ .+-++++.+.++-+.+++.- ++.|++||=- .++++.++++. +|+|
T Consensus 111 ~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~--~~~~~~~~a~~l~~~G~d~i 186 (301)
T PRK07259 111 EKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVPVIVKLTP--NVTDIVEIAKAAEEAGADGL 186 (301)
T ss_pred HHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCEEEEcCC--CchhHHHHHHHHHHcCCCEE
Confidence 4455677 999854 22334555666666565442 4789999851 22344444432 6988
Q ss_pred EE-----eCC-CCCC-------C----CCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHH
Q 008172 334 MV-----ARG-DLGV-------D----IPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVR 396 (575)
Q Consensus 334 mI-----aRG-DLg~-------e----~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~ 396 (575)
.+ ++. |+-. . -|....|...+.+-+.....+.|+|...-+- | ..|+..++.
T Consensus 187 ~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~---------~---~~da~~~l~ 254 (301)
T PRK07259 187 SLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGIS---------S---AEDAIEFIM 254 (301)
T ss_pred EEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCC---------C---HHHHHHHHH
Confidence 65 211 2211 1 1112223333333333444589999865433 2 346677788
Q ss_pred cccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhh
Q 008172 397 QYADALMLSGESAIGPFGQKAVSVLQMASSRMELWS 432 (575)
Q Consensus 397 ~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~ 432 (575)
.|+|+||+..---.| | .+.+++.+.-+.|.
T Consensus 255 aGAd~V~igr~ll~~--P----~~~~~i~~~l~~~~ 284 (301)
T PRK07259 255 AGASAVQVGTANFYD--P----YAFPKIIEGLEAYL 284 (301)
T ss_pred cCCCceeEcHHHhcC--c----HHHHHHHHHHHHHH
Confidence 999999997443332 4 34444544444443
No 118
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=83.17 E-value=20 Score=37.57 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=72.4
Q ss_pred CCCCccCHHHH--------HHHHHcCCCEEEecCc-------------CCh----------------hhHHHHHHHHhcc
Q 008172 261 PTLSKKDWDDI--------EFGIAEGVDFIAMSFV-------------CDA----------------DSVRHLKKYVSGK 303 (575)
Q Consensus 261 p~lsekD~~di--------~~al~~gvd~I~~SfV-------------~sa----------------~dv~~ir~~l~~~ 303 (575)
..||..|++.+ +.+.+.|+|+|=+-.- +.. +-++++|+.+
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~--- 205 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAV--- 205 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHc---
Confidence 36777777666 5778899999866432 222 2233334333
Q ss_pred CCCCceEEeeecCH----------HHHhcHHHHHhc-CCEEEEeCCCCCCCCCC----CChHHHHHHHHHHH-HHcCCCE
Q 008172 304 SSRSIKVLAKIENL----------ESLQKFEEIVEA-SDGIMVARGDLGVDIPL----EQIPTVQEIIIHVC-RQLNKPV 367 (575)
Q Consensus 304 ~~~~i~IIaKIEt~----------~av~nldeI~~~-sDgImIaRGDLg~e~~~----e~v~~~Qk~Ii~~c-~~~gKPv 367 (575)
+ ++..|..||.-. ++++-++.+.+. .|.|-+..|+..-.... ..-+......++.. ...+.|+
T Consensus 206 g-~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPV 284 (327)
T cd02803 206 G-PDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPV 284 (327)
T ss_pred C-CCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCE
Confidence 2 567888888632 233334444444 79999888775322110 00112222333333 3348999
Q ss_pred EEehhhHHhhhcCCCCChhhHhhHHHHHHc-ccceEEec
Q 008172 368 IVASQLLESMVEYPTPTRAEVADVSEAVRQ-YADALMLS 405 (575)
Q Consensus 368 ivaTq~LeSM~~~p~PtrAEv~Dv~nav~~-G~D~vmLs 405 (575)
+....+- |. .++..++.. |+|.|++.
T Consensus 285 i~~Ggi~---------t~---~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 285 IAVGGIR---------DP---EVAEEILAEGKADLVALG 311 (327)
T ss_pred EEeCCCC---------CH---HHHHHHHHCCCCCeeeec
Confidence 8865432 23 334566776 79999996
No 119
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=83.06 E-value=6.8 Score=42.24 Aligned_cols=97 Identities=18% Similarity=0.282 Sum_probs=63.9
Q ss_pred HHHHHHHHcCCCE--EEecCcCChhhHHHHHHHHhccCCCCceEEeee--cCHHHHhcHHHHHhcCCEEEEeCCCCCCCC
Q 008172 269 DDIEFGIAEGVDF--IAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKI--ENLESLQKFEEIVEASDGIMVARGDLGVDI 344 (575)
Q Consensus 269 ~di~~al~~gvd~--I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKI--Et~~av~nldeI~~~sDgImIaRGDLg~e~ 344 (575)
+.|+...+.|+|. +++|-.+.++.+.++++.|...| -++.++|-| .-.-|+.. +-. +|.|-|.||.++-++
T Consensus 35 ~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g-~~iPlVADIHFd~~lAl~a---~~~-v~kiRINPGNi~~~~ 109 (359)
T PF04551_consen 35 AQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALG-SPIPLVADIHFDYRLALEA---IEA-VDKIRINPGNIVDEF 109 (359)
T ss_dssp HHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT--SS-EEEEESTTCHHHHHH---HHC--SEEEE-TTTSS---
T ss_pred HHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCC-CCCCeeeecCCCHHHHHHH---HHH-hCeEEECCCcccccc
Confidence 4455666789998 56676777777777777777777 679999999 44555544 333 999999999996433
Q ss_pred --CCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 345 --PLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 345 --~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
+...+..--+.++++|+++|+|+=+-
T Consensus 110 ~~~~g~~~~~~~~vv~~ake~~ipIRIG 137 (359)
T PF04551_consen 110 QEELGSIREKVKEVVEAAKERGIPIRIG 137 (359)
T ss_dssp -SS-SS-HHHHHHHHHHHHHHT-EEEEE
T ss_pred cccccchHHHHHHHHHHHHHCCCCEEEe
Confidence 22455777889999999999998654
No 120
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=82.61 E-value=31 Score=35.54 Aligned_cols=131 Identities=19% Similarity=0.187 Sum_probs=78.3
Q ss_pred HHHHHHHHcCCCEEEecCcC-ChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCCCC
Q 008172 269 DDIEFGIAEGVDFIAMSFVC-DADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARGDLGVDIPL 346 (575)
Q Consensus 269 ~di~~al~~gvd~I~~SfV~-sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGDLg~e~~~ 346 (575)
..+..+.++|+|+|.+---- +.++++++.+.....| ..+++-+-+.+-+ +...+. +|.|.+..-||... .
T Consensus 124 ~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lG---l~~lvevh~~~E~---~~A~~~gadiIgin~rdl~~~-~- 195 (260)
T PRK00278 124 YQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLG---LDVLVEVHDEEEL---ERALKLGAPLIGINNRNLKTF-E- 195 (260)
T ss_pred HHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcC---CeEEEEeCCHHHH---HHHHHcCCCEEEECCCCcccc-c-
Confidence 35788999999998765333 5677888877776665 4566666566533 223333 89888887777543 1
Q ss_pred CChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHH
Q 008172 347 EQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVL 421 (575)
Q Consensus 347 e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m 421 (575)
.+ +..-+++++... ...|+|.-. ..=|.. |+..+...|+|+++....-..-..|.++++-+
T Consensus 196 ~d-~~~~~~l~~~~p-~~~~vIaeg---------GI~t~e---d~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l 256 (260)
T PRK00278 196 VD-LETTERLAPLIP-SDRLVVSES---------GIFTPE---DLKRLAKAGADAVLVGESLMRADDPGAALREL 256 (260)
T ss_pred CC-HHHHHHHHHhCC-CCCEEEEEe---------CCCCHH---HHHHHHHcCCCEEEECHHHcCCCCHHHHHHHH
Confidence 12 222233333221 123555422 222333 55666678999998876655567787776643
No 121
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=82.55 E-value=16 Score=38.96 Aligned_cols=114 Identities=15% Similarity=0.268 Sum_probs=69.1
Q ss_pred CHHHHHHHHHcCCCEEEecCcCC-hhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCC
Q 008172 267 DWDDIEFGIAEGVDFIAMSFVCD-ADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARGDLGVDI 344 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~SfV~s-a~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGDLg~e~ 344 (575)
..+.+...++.++++|.++|=.- .+.+++++ +. .++++.++-|.+... ..++. +|+|++-=.+=|-+.
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~----~~---gi~v~~~v~s~~~A~---~a~~~G~D~iv~qG~eAGGH~ 171 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGFGLPPPEVIERLH----AA---GIKVIPQVTSVREAR---KAAKAGADAIVAQGPEAGGHR 171 (330)
T ss_dssp HHHHHHHHHHS--SEEEEESSSC-HHHHHHHH----HT---T-EEEEEESSHHHHH---HHHHTT-SEEEEE-TTSSEE-
T ss_pred cccccccccccceEEEEeecccchHHHHHHHH----Hc---CCccccccCCHHHHH---HhhhcCCCEEEEeccccCCCC
Confidence 35667888999999999999766 44444444 33 389999998876554 33444 899888644555555
Q ss_pred CC--CChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 345 PL--EQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 345 ~~--e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
+. +.....-.++.+ ....|||.|--+- .-.+++.++..|+|++++.
T Consensus 172 g~~~~~~~~L~~~v~~---~~~iPViaAGGI~------------dg~~iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 172 GFEVGSTFSLLPQVRD---AVDIPVIAAGGIA------------DGRGIAAALALGADGVQMG 219 (330)
T ss_dssp --SSG-HHHHHHHHHH---H-SS-EEEESS--------------SHHHHHHHHHCT-SEEEES
T ss_pred CccccceeeHHHHHhh---hcCCcEEEecCcC------------CHHHHHHHHHcCCCEeecC
Confidence 51 124444444443 3449999997665 3467889999999999984
No 122
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=82.31 E-value=46 Score=33.23 Aligned_cols=138 Identities=11% Similarity=0.106 Sum_probs=79.0
Q ss_pred cCHHHHHHHHHcCCCEEEe-cCcCChh------hHHHHHHHHhccCCCCceEEeee----------cCHHHHhcHHHHHh
Q 008172 266 KDWDDIEFGIAEGVDFIAM-SFVCDAD------SVRHLKKYVSGKSSRSIKVLAKI----------ENLESLQKFEEIVE 328 (575)
Q Consensus 266 kD~~di~~al~~gvd~I~~-SfV~sa~------dv~~ir~~l~~~~~~~i~IIaKI----------Et~~av~nldeI~~ 328 (575)
.....++.+++.|+|.|.+ -+..... ++.++++...+.+ +.+|.-. -+.+-++..-.++.
T Consensus 77 ~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g---~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~ 153 (235)
T cd00958 77 VLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYG---LPLIAWMYPRGPAVKNEKDPDLIAYAARIGA 153 (235)
T ss_pred hhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcC---CCEEEEEeccCCcccCccCHHHHHHHHHHHH
Confidence 3445678899999998733 2223322 5555555555444 4444422 11222222112222
Q ss_pred c--CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhh-HhhHHHHHHcccceEEec
Q 008172 329 A--SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAE-VADVSEAVRQYADALMLS 405 (575)
Q Consensus 329 ~--sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAE-v~Dv~nav~~G~D~vmLs 405 (575)
. +|.|-+.. + .. ....+++ ++....||+++--+ ...|..+ ...+..+...|++++...
T Consensus 154 ~~GaD~Ik~~~-------~-~~-~~~~~~i---~~~~~~pvv~~GG~-------~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 154 ELGADIVKTKY-------T-GD-AESFKEV---VEGCPVPVVIAGGP-------KKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred HHCCCEEEecC-------C-CC-HHHHHHH---HhcCCCCEEEeCCC-------CCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 2 79888841 1 12 2223333 34456898654211 1123332 455677889999999999
Q ss_pred cCcCCCCCHHHHHHHHHHHH
Q 008172 406 GESAIGPFGQKAVSVLQMAS 425 (575)
Q Consensus 406 ~ETa~G~yPveaV~~m~~I~ 425 (575)
..-.....|.++++.+++++
T Consensus 215 ~~i~~~~dp~~~~~~~~~~~ 234 (235)
T cd00958 215 RNIFQRPDPVAMLRAISAVV 234 (235)
T ss_pred hhhhcCCCHHHHHHHHHHHh
Confidence 88888889999999888764
No 123
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=82.26 E-value=6.4 Score=43.18 Aligned_cols=126 Identities=18% Similarity=0.266 Sum_probs=79.0
Q ss_pred CccCHHHHHHHHHcCCCEEEec--CcCChhhHHHHHHHHhccCCCCceEEe-eecCHHHHhcHHHHHhcCCEEEEeCCCC
Q 008172 264 SKKDWDDIEFGIAEGVDFIAMS--FVCDADSVRHLKKYVSGKSSRSIKVLA-KIENLESLQKFEEIVEASDGIMVARGDL 340 (575)
Q Consensus 264 sekD~~di~~al~~gvd~I~~S--fV~sa~dv~~ir~~l~~~~~~~i~IIa-KIEt~~av~nldeI~~~sDgImIaRGDL 340 (575)
-|.|+..+....+.|+|+|++- -=+|--+++. .+++++.. .+..||+ -.=|.+=.+|| |.+-+||+-||=|-=
T Consensus 249 re~dK~rl~ll~~aGvdvviLDSSqGnS~~qiem-ik~iK~~y-P~l~ViaGNVVT~~qa~nL--I~aGaDgLrVGMGsG 324 (503)
T KOG2550|consen 249 RDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEM-IKYIKETY-PDLQIIAGNVVTKEQAANL--IAAGADGLRVGMGSG 324 (503)
T ss_pred ccchhHHHHHhhhcCCcEEEEecCCCcchhHHHH-HHHHHhhC-CCceeeccceeeHHHHHHH--HHccCceeEeccccC
Confidence 3567888888899999999873 2233333433 45676665 5666655 22333333332 444499999986643
Q ss_pred CCCCCCCC--hH----HHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 341 GVDIPLEQ--IP----TVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 341 g~e~~~e~--v~----~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
++=+-.+. +- .+--++.+.+++.|.|||-- ---.-+.+++.|+..|++.||+.
T Consensus 325 SiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviAD------------GGiq~~Ghi~KAl~lGAstVMmG 383 (503)
T KOG2550|consen 325 SICITQKVMACGRPQGTAVYKVAEFANQFGVPCIAD------------GGIQNVGHVVKALGLGASTVMMG 383 (503)
T ss_pred ceeeeceeeeccCCcccchhhHHHHHHhcCCceeec------------CCcCccchhHhhhhcCchhheec
Confidence 32222111 11 11226788899999999952 33335788999999999999984
No 124
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=82.25 E-value=38 Score=31.97 Aligned_cols=108 Identities=19% Similarity=0.095 Sum_probs=53.6
Q ss_pred ChhhHhhHHHHHHcccceEEeccCcCCCCC----HHHHHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCCCCCchhhHH
Q 008172 384 TRAEVADVSEAVRQYADALMLSGESAIGPF----GQKAVSVLQMASSRMELWSREENRQSALCGQRQLGESLHDRIAEQI 459 (575)
Q Consensus 384 trAEv~Dv~nav~~G~D~vmLs~ETa~G~y----PveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 459 (575)
|+.-+..+..|...|+|++++..- .+.. +.+.++..+.++++++.-.. ...| ..+. .....+.+
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~p-v~iy----~~p~-----~~~~~~~~ 131 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVIN--IGSLKEGDWEEVLEEIAAVVEAADGGLP-LKVI----LETR-----GLKTADEI 131 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecc--HHHHhCCCHHHHHHHHHHHHHHhcCCce-EEEE----EECC-----CCCCHHHH
Confidence 455567778889999999999532 1111 34556666666555410000 0000 0010 00012333
Q ss_pred HHHHHHHHHhcCCcEEEEEcC------ChhHHHHHhc-cCCCCcEEEEcCcH
Q 008172 460 CNCAVDMANNLGVDAIFVYTK------HGHMASLLSR-NRPNPPIFAFTNDD 504 (575)
Q Consensus 460 a~~av~~a~~~~AkaIVVfT~------SG~TAr~VSr-~RP~~PIiAvT~~~ 504 (575)
. .+++++...++++|=..+. +-...+.+.+ +.+..||++.....
T Consensus 132 ~-~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~ 182 (201)
T cd00945 132 A-KAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIK 182 (201)
T ss_pred H-HHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCC
Confidence 3 3455666788986655443 2122333333 33367888887544
No 125
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=82.13 E-value=22 Score=38.40 Aligned_cols=118 Identities=21% Similarity=0.302 Sum_probs=83.6
Q ss_pred ccCHHHHHHHHHcCCCEEEecCc----------CChhhHHHHHHHHhccCCCCceEEeee----cCHHH-HhcHHHHHhc
Q 008172 265 KKDWDDIEFGIAEGVDFIAMSFV----------CDADSVRHLKKYVSGKSSRSIKVLAKI----ENLES-LQKFEEIVEA 329 (575)
Q Consensus 265 ekD~~di~~al~~gvd~I~~SfV----------~sa~dv~~ir~~l~~~~~~~i~IIaKI----Et~~a-v~nldeI~~~ 329 (575)
..+.++++.+++.|||.|.+.+= -+-+|++++.+++.++| +.+.+..-+ +..+. .+-++...+.
T Consensus 13 ag~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~g-kk~~V~~N~~~~~~~~~~~~~~l~~l~e~ 91 (347)
T COG0826 13 AGNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAG-KKVYVAVNTLLHNDELETLERYLDRLVEL 91 (347)
T ss_pred CCCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcC-CeEEEEeccccccchhhHHHHHHHHHHHc
Confidence 46899999999999999999854 57788999999998887 433322211 22222 3445666666
Q ss_pred -CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcC--CCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEecc
Q 008172 330 -SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLN--KPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSG 406 (575)
Q Consensus 330 -sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~g--KPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ 406 (575)
.|+|++ +|+| ++..+++.+ .|+.+.||+- -|-++ .+--+-..|+.-++|+.
T Consensus 92 GvDaviv--~Dpg--------------~i~l~~e~~p~l~ih~S~q~~--------v~N~~--~~~f~~~~G~~rvVl~r 145 (347)
T COG0826 92 GVDAVIV--ADPG--------------LIMLARERGPDLPIHVSTQAN--------VTNAE--TAKFWKELGAKRVVLPR 145 (347)
T ss_pred CCCEEEE--cCHH--------------HHHHHHHhCCCCcEEEeeeEe--------cCCHH--HHHHHHHcCCEEEEeCc
Confidence 899999 4653 577889888 9999999976 11111 12334567999999998
Q ss_pred CcC
Q 008172 407 ESA 409 (575)
Q Consensus 407 ETa 409 (575)
|.+
T Consensus 146 Els 148 (347)
T COG0826 146 ELS 148 (347)
T ss_pred cCC
Confidence 865
No 126
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=81.78 E-value=12 Score=39.26 Aligned_cols=113 Identities=17% Similarity=0.308 Sum_probs=67.7
Q ss_pred HHHHHHHHcCCCEEEe------------------cCcCChhhHHHHHHHHhccCCCCceEEeeecCH-------HHHhcH
Q 008172 269 DDIEFGIAEGVDFIAM------------------SFVCDADSVRHLKKYVSGKSSRSIKVLAKIENL-------ESLQKF 323 (575)
Q Consensus 269 ~di~~al~~gvd~I~~------------------SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~-------~av~nl 323 (575)
+.++...+.|+.+|.+ ..+...+.+..++.....+.+.++.|+|..|.. ++++..
T Consensus 96 r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra 175 (285)
T TIGR02320 96 RLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRA 175 (285)
T ss_pred HHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHH
Confidence 3456677899999998 334445556666666554333579999997764 566666
Q ss_pred HHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHc-----CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHc
Q 008172 324 EEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQL-----NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQ 397 (575)
Q Consensus 324 deI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~-----gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~ 397 (575)
..-.+. +|+|||- .+... .+.+.+.+++. ..|+.+. |...|.++.+|+. ..
T Consensus 176 ~ay~eAGAD~ifv~-------~~~~~----~~ei~~~~~~~~~~~p~~pl~~~------~~~~~~~~~~eL~------~l 232 (285)
T TIGR02320 176 EAYAEAGADGIMIH-------SRKKD----PDEILEFARRFRNHYPRTPLVIV------PTSYYTTPTDEFR------DA 232 (285)
T ss_pred HHHHHcCCCEEEec-------CCCCC----HHHHHHHHHHhhhhCCCCCEEEe------cCCCCCCCHHHHH------Hc
Confidence 666666 9999994 11222 12333334443 3587531 2234555554443 57
Q ss_pred ccceEEe
Q 008172 398 YADALML 404 (575)
Q Consensus 398 G~D~vmL 404 (575)
|+..+..
T Consensus 233 G~~~v~~ 239 (285)
T TIGR02320 233 GISVVIY 239 (285)
T ss_pred CCCEEEE
Confidence 8887654
No 127
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=81.39 E-value=9.2 Score=41.45 Aligned_cols=90 Identities=19% Similarity=0.254 Sum_probs=67.6
Q ss_pred hhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 291 DSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 291 ~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
+....++++..+.| +.+++-+-+.+.++-+.+ ++|.+.||-+++.- -.+++.+.+.||||++.
T Consensus 169 e~l~~L~~~~~~~G---l~~~t~v~d~~~~~~l~~---~vd~lkI~s~~~~n-----------~~LL~~~a~~gkPVilk 231 (360)
T PRK12595 169 EGLKILKQVADEYG---LAVISEIVNPADVEVALD---YVDVIQIGARNMQN-----------FELLKAAGRVNKPVLLK 231 (360)
T ss_pred HHHHHHHHHHHHcC---CCEEEeeCCHHHHHHHHH---hCCeEEECcccccC-----------HHHHHHHHccCCcEEEe
Confidence 56777888887766 789998888777665554 49999999777632 35777888899999998
Q ss_pred hhhHHhhhcCCCCChhhHhhHHHHHH-cccceEEec
Q 008172 371 SQLLESMVEYPTPTRAEVADVSEAVR-QYADALMLS 405 (575)
Q Consensus 371 Tq~LeSM~~~p~PtrAEv~Dv~nav~-~G~D~vmLs 405 (575)
|.|. +|-.|+...++.+. .|.+-++|.
T Consensus 232 ~G~~--------~t~~e~~~Ave~i~~~Gn~~i~L~ 259 (360)
T PRK12595 232 RGLS--------ATIEEFIYAAEYIMSQGNGQIILC 259 (360)
T ss_pred CCCC--------CCHHHHHHHHHHHHHCCCCCEEEE
Confidence 7654 67778887777665 577667776
No 128
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=81.14 E-value=58 Score=34.28 Aligned_cols=131 Identities=15% Similarity=0.204 Sum_probs=87.8
Q ss_pred CHHHHHHHHHcCCCEEEe-----cC---------cCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CC
Q 008172 267 DWDDIEFGIAEGVDFIAM-----SF---------VCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SD 331 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~-----Sf---------V~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sD 331 (575)
+.+..+.|-+.|+-.|++ |- .+++++++++++.. ++.||+++-.-- +...+++.+. +|
T Consensus 17 ~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V------~iPVIGi~K~~~-~~Ea~~L~eaGvD 89 (283)
T cd04727 17 NAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAV------SIPVMAKVRIGH-FVEAQILEALGVD 89 (283)
T ss_pred CHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhC------CCCeEEeeehhH-HHHHHHHHHcCCC
Confidence 345556677888888877 43 34566666766644 477888775322 6777777777 88
Q ss_pred EEEEeCCCCCCCCCCCChHHHHHHHHHHHHH-cCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCC
Q 008172 332 GIMVARGDLGVDIPLEQIPTVQEIIIHVCRQ-LNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAI 410 (575)
Q Consensus 332 gImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~-~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~ 410 (575)
.| | ..+-+-+ -..++...+. ++.|++.- -+.+.+.-+++..|+|.|=-+.|--.
T Consensus 90 iI-----D-aT~r~rP-----~~~~~~~iK~~~~~l~MAD--------------~stleEal~a~~~Gad~I~TTl~gyT 144 (283)
T cd04727 90 MI-----D-ESEVLTP-----ADEEHHIDKHKFKVPFVCG--------------ARNLGEALRRISEGAAMIRTKGEAGT 144 (283)
T ss_pred EE-----e-ccCCCCc-----HHHHHHHHHHHcCCcEEcc--------------CCCHHHHHHHHHCCCCEEEecCCCCC
Confidence 88 4 3333323 2445555554 47787742 22345567889999999998888655
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q 008172 411 GPFGQKAVSVLQMASSRMEL 430 (575)
Q Consensus 411 G~yPveaV~~m~~I~~~aE~ 430 (575)
| +-.|+|+-+++|-.++..
T Consensus 145 ~-~~~~~~~~~~~i~~~i~~ 163 (283)
T cd04727 145 G-NVVEAVRHMRAVNGEIRK 163 (283)
T ss_pred C-cHHHHHHHHHHHHHHHHH
Confidence 5 678999999999776654
No 129
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=80.95 E-value=18 Score=38.20 Aligned_cols=209 Identities=17% Similarity=0.195 Sum_probs=117.4
Q ss_pred HHHHHHHHHcCCCEEEecCcCChhhHHHHHHHH--------------------------------------------hcc
Q 008172 268 WDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYV--------------------------------------------SGK 303 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l--------------------------------------------~~~ 303 (575)
+..+.-|++.|+|+|.+. ++|+.+++++= ..+
T Consensus 18 K~~it~alEaG~d~vvv~----~~dvervkeLGni~vaa~~~daDiv~vgk~gegdgt~~lp~~~~~s~di~~~~~~~~~ 93 (376)
T COG1465 18 KKRITAALEAGVDVVVVR----PADVERVKELGNIKVAAPSDDADIVVVGKDGEGDGTVDLPADISGSADIEALRELMDR 93 (376)
T ss_pred hHHHHHHHhcCCCEEEEC----HHHHHHHHhhCceEEecccCCCceEEeccCCCCCCcccCcccccccccHHHHHHhhhc
Confidence 356778999999998764 47777776641 112
Q ss_pred CCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCC
Q 008172 304 SSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTP 383 (575)
Q Consensus 304 ~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~P 383 (575)
| ........|.+.+--+-..++..++|.+++-=-|.. -+|+|++.. . .++.+--++|. .-
T Consensus 94 G-~~~~~yV~I~~ke~EefA~~~~~~~d~~i~~g~DWk-iIPLENlIA-------~-l~~e~~kliA~----------V~ 153 (376)
T COG1465 94 G-HEVAAYVEIRSKEDEEFAAERAKVADYVIVVGEDWK-IIPLENLIA-------D-LQHEKVKLIAG----------VK 153 (376)
T ss_pred C-cceEEEEEEcCccchHHHHhhccccceEEEEcCcce-EeeHHHHHH-------H-hhccceEEEEE----------ec
Confidence 2 346688889888877777788888899888645553 256666431 1 11222223331 34
Q ss_pred ChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhhhhh--hHHhh---------h-cccccCCC-
Q 008172 384 TRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSREEN--RQSAL---------C-GQRQLGES- 450 (575)
Q Consensus 384 trAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~--~~~~~---------~-~~~~~~~~- 450 (575)
+-+|..=-+..+.-|+|+++|.++ .| +-++-...+.+++|+...+.. .-..+ | +...+...
T Consensus 154 saeEA~vA~eTLE~GaDgVll~~~-----d~-~eIk~~~~~~~e~~~E~~eL~~a~vt~ieplG~gDRVCVDTcsLm~~g 227 (376)
T COG1465 154 SAEEARVALETLEKGADGVLLDSD-----DP-EEIKKTAEVVEEAESERLELVTATVTEIEPLGSGDRVCVDTCSLMTRG 227 (376)
T ss_pred cHHHHHHHHHHHhccCceEEeCCC-----CH-HHHHHHHHHHHHhccceeEEEEEEEEEEeecCCCceEEEeeecccccC
Confidence 455555557789999999999855 55 445555667777663211100 00000 0 00000000
Q ss_pred -------CCCc--h--hhHHHH-HHHHHHHhcCCcEEEEEcCC-hhHHHHHhccCCCCcEEEEcCcHHH
Q 008172 451 -------LHDR--I--AEQICN-CAVDMANNLGVDAIFVYTKH-GHMASLLSRNRPNPPIFAFTNDDST 506 (575)
Q Consensus 451 -------~~~~--~--~~~ia~-~av~~a~~~~AkaIVVfT~S-G~TAr~VSr~RP~~PIiAvT~~~~~ 506 (575)
...- . +++.-+ -...--++.||.++=.|-+. |.-.+++|-.++.=+++.+-.+-++
T Consensus 228 EGMLVGs~s~gmFlVhsEs~espYVAaRPFRVNAG~VhaYi~vPg~kTkYLaEL~aGDeV~iVD~dGr~ 296 (376)
T COG1465 228 EGMLVGSQSRGMFLVHSESEESPYVAARPFRVNAGAVHAYIRVPGGKTKYLAELKAGDEVLIVDFDGRT 296 (376)
T ss_pred CceEeecccCcEEEEecccccCcccccCceeecccceeEEEEcCCCceEEhhhhcCCCeEEEEecCCce
Confidence 0000 0 000000 00112355677776666666 6677888999998888888666554
No 130
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=80.65 E-value=49 Score=35.89 Aligned_cols=104 Identities=13% Similarity=0.205 Sum_probs=72.0
Q ss_pred hhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 291 DSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 291 ~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
+.++.++++..+.| +.+++-+-+.+.++-+.+ .+|.+-||-+++. + -.+++++-+.||||++.
T Consensus 152 ~gl~~L~~~~~e~G---l~~~tev~d~~~v~~~~~---~~d~lqIga~~~~------n-----~~LL~~va~t~kPVllk 214 (352)
T PRK13396 152 SALELLAAAREATG---LGIITEVMDAADLEKIAE---VADVIQVGARNMQ------N-----FSLLKKVGAQDKPVLLK 214 (352)
T ss_pred HHHHHHHHHHHHcC---CcEEEeeCCHHHHHHHHh---hCCeEEECccccc------C-----HHHHHHHHccCCeEEEe
Confidence 34455555555554 789999988877766655 4899999866552 2 34578888899999998
Q ss_pred hhhHHhhhcCCCCChhhHhhHHHHHH-cccceEEeccC---cCCCCCHHHHHH
Q 008172 371 SQLLESMVEYPTPTRAEVADVSEAVR-QYADALMLSGE---SAIGPFGQKAVS 419 (575)
Q Consensus 371 Tq~LeSM~~~p~PtrAEv~Dv~nav~-~G~D~vmLs~E---Ta~G~yPveaV~ 419 (575)
|.|. +|-.|+-..+..+. .|.+-++|..- |-...||.+.+.
T Consensus 215 ~G~~--------~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~d 259 (352)
T PRK13396 215 RGMA--------ATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLD 259 (352)
T ss_pred CCCC--------CCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcC
Confidence 7654 68888888887665 47777888633 333467854444
No 131
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=80.45 E-value=1 Score=50.29 Aligned_cols=92 Identities=17% Similarity=0.300 Sum_probs=63.2
Q ss_pred cCCCEEEecCcCChhhHHHHHHHHh--------------------ccCCCCceEEeeecCHHHHhcHHHHHhc--CC---
Q 008172 277 EGVDFIAMSFVCDADSVRHLKKYVS--------------------GKSSRSIKVLAKIENLESLQKFEEIVEA--SD--- 331 (575)
Q Consensus 277 ~gvd~I~~SfV~sa~dv~~ir~~l~--------------------~~~~~~i~IIaKIEt~~av~nldeI~~~--sD--- 331 (575)
..+-+|++||+.|++++..+.++.. +...+.+.||.=||+.+++-|.++|+.. -+
T Consensus 119 ~pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~~~~g~ 198 (491)
T PF14010_consen 119 QPIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGEFDPEEIEVIPLFEDVDSLLNADEILEEYLKDKGR 198 (491)
T ss_dssp -S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS---TTSSEEEEEE-SHHHHHTHHHHHHHHHHHTT-
T ss_pred cchheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccccCcCcceEeeccccHHHHhcHHHHHHHHHHHhcC
Confidence 4677899999999999988865532 1223579999999999999999999987 12
Q ss_pred -----EEEEeCCCCCCCCCCCChHHHHH----HHHHHHHHcCCCEE
Q 008172 332 -----GIMVARGDLGVDIPLEQIPTVQE----IIIHVCRQLNKPVI 368 (575)
Q Consensus 332 -----gImIaRGDLg~e~~~e~v~~~Qk----~Ii~~c~~~gKPvi 368 (575)
=+|+||.|=++..|+=.-...-| ++-+.-.+.|.|+.
T Consensus 199 ~~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~Iy 244 (491)
T PF14010_consen 199 DPEYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPIY 244 (491)
T ss_dssp --SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEE
T ss_pred CchheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence 38999999999999743333333 44455577888875
No 132
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=79.62 E-value=16 Score=37.47 Aligned_cols=99 Identities=20% Similarity=0.323 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEE
Q 008172 290 ADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIV 369 (575)
Q Consensus 290 a~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviv 369 (575)
.++..++.+++++.| +..++-.=+.++++-++++ -.+.+=||-+||. .+ .+++.+.+.|||+|+
T Consensus 55 ~e~~~~L~~~~~~~g---i~f~stpfd~~s~d~l~~~--~~~~~KIaS~dl~------n~-----~lL~~~A~tgkPvIl 118 (241)
T PF03102_consen 55 EEQHKELFEYCKELG---IDFFSTPFDEESVDFLEEL--GVPAYKIASGDLT------NL-----PLLEYIAKTGKPVIL 118 (241)
T ss_dssp HHHHHHHHHHHHHTT----EEEEEE-SHHHHHHHHHH--T-SEEEE-GGGTT-------H-----HHHHHHHTT-S-EEE
T ss_pred HHHHHHHHHHHHHcC---CEEEECCCCHHHHHHHHHc--CCCEEEecccccc------CH-----HHHHHHHHhCCcEEE
Confidence 344455555554443 4444444444444444332 2778888888884 33 367788889999999
Q ss_pred ehhhHHhhhcCCCCChhhHhhHHHHH-HcccceEEeccCcCCCCCHH
Q 008172 370 ASQLLESMVEYPTPTRAEVADVSEAV-RQYADALMLSGESAIGPFGQ 415 (575)
Q Consensus 370 aTq~LeSM~~~p~PtrAEv~Dv~nav-~~G~D~vmLs~ETa~G~yPv 415 (575)
.|-| -|-+|+.+..+++ ..|.+=+.|-.= +..||.
T Consensus 119 STG~---------stl~EI~~Av~~~~~~~~~~l~llHC--~s~YP~ 154 (241)
T PF03102_consen 119 STGM---------STLEEIERAVEVLREAGNEDLVLLHC--VSSYPT 154 (241)
T ss_dssp E-TT-----------HHHHHHHHHHHHHHCT--EEEEEE---SSSS-
T ss_pred ECCC---------CCHHHHHHHHHHHHhcCCCCEEEEec--CCCCCC
Confidence 9864 5788999888888 555555554322 346774
No 133
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=79.57 E-value=6.9 Score=39.03 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCC
Q 008172 352 VQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAI 410 (575)
Q Consensus 352 ~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~ 410 (575)
....+++.|+++|.|++ |--.=.+++..|...|+|.+=+=--...
T Consensus 85 ~~~~vi~~a~~~~i~~i--------------PG~~TptEi~~A~~~Ga~~vK~FPa~~~ 129 (201)
T PRK06015 85 TTQELLAAANDSDVPLL--------------PGAATPSEVMALREEGYTVLKFFPAEQA 129 (201)
T ss_pred CCHHHHHHHHHcCCCEe--------------CCCCCHHHHHHHHHCCCCEEEECCchhh
Confidence 45789999999999998 4444456778999999999988543333
No 134
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=79.49 E-value=35 Score=33.12 Aligned_cols=131 Identities=15% Similarity=0.057 Sum_probs=70.8
Q ss_pred HHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHh----cCCEEEEeCCCCCCCCC
Q 008172 270 DIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVE----ASDGIMVARGDLGVDIP 345 (575)
Q Consensus 270 di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~----~sDgImIaRGDLg~e~~ 345 (575)
+++.+.+.|+|+|.++.-. .....++... .. ...+-+-.- +.+|+.+ -+|.|.+++-.=+..=+
T Consensus 73 ~~~~a~~~gad~vh~~~~~--~~~~~~~~~~-~~---~~~~g~~~~------t~~e~~~a~~~gaD~v~~~~~~~~~~~~ 140 (212)
T PRK00043 73 RVDLALAVGADGVHLGQDD--LPVADARALL-GP---DAIIGLSTH------TLEEAAAALAAGADYVGVGPIFPTPTKK 140 (212)
T ss_pred hHHHHHHcCCCEEecCccc--CCHHHHHHHc-CC---CCEEEEeCC------CHHHHHHHhHcCCCEEEECCccCCCCCC
Confidence 3567889999998886532 2234444432 12 223333332 3333333 38999987432221111
Q ss_pred ---CCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHH
Q 008172 346 ---LEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQ 422 (575)
Q Consensus 346 ---~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~ 422 (575)
...-....+++.+.+ ...|++.+.-+ +. .++..+...|+|++.+.+.-..-..|.++++.+.
T Consensus 141 ~~~~~~g~~~~~~~~~~~--~~~~v~a~GGI----------~~---~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~ 205 (212)
T PRK00043 141 DAKAPQGLEGLREIRAAV--GDIPIVAIGGI----------TP---ENAPEVLEAGADGVAVVSAITGAEDPEAAARALL 205 (212)
T ss_pred CCCCCCCHHHHHHHHHhc--CCCCEEEECCc----------CH---HHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHH
Confidence 011022233332222 13898876432 22 4566778899999999765554567888888776
Q ss_pred HHHHH
Q 008172 423 MASSR 427 (575)
Q Consensus 423 ~I~~~ 427 (575)
.....
T Consensus 206 ~~~~~ 210 (212)
T PRK00043 206 AAFRA 210 (212)
T ss_pred HHHhh
Confidence 65443
No 135
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=79.27 E-value=31 Score=38.29 Aligned_cols=125 Identities=16% Similarity=0.188 Sum_probs=73.7
Q ss_pred CHHHHHHHHHcCCCEEEecC-cCChhhHHHHHHH-Hh--ccC--CCCceEEeeecCHHHHhcH---------HHHHhc--
Q 008172 267 DWDDIEFGIAEGVDFIAMSF-VCDADSVRHLKKY-VS--GKS--SRSIKVLAKIENLESLQKF---------EEIVEA-- 329 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~Sf-V~sa~dv~~ir~~-l~--~~~--~~~i~IIaKIEt~~av~nl---------deI~~~-- 329 (575)
+.+.++..++.|+..|..|. ..-...+...|.. +. ..+ .....|++|+-+++-...+ +.+.+.
T Consensus 84 e~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~ 163 (418)
T cd04742 84 EEGLVDLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGK 163 (418)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCcchhhHHhcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCC
Confidence 45668889999999998885 3322233233321 10 000 0113599998776544221 222222
Q ss_pred --------------CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHc--------CCCEEEehhhHHhhhcCCCCChhh
Q 008172 330 --------------SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQL--------NKPVIVASQLLESMVEYPTPTRAE 387 (575)
Q Consensus 330 --------------sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~--------gKPvivaTq~LeSM~~~p~PtrAE 387 (575)
+|.|.+. .|=|-+.+.......--.|.+.+.+. ..|||.|.-+- .
T Consensus 164 it~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~------------t 230 (418)
T cd04742 164 ITEEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIG------------T 230 (418)
T ss_pred CCHHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCC------------C
Confidence 6899998 88887776432333333344433322 58999887554 2
Q ss_pred HhhHHHHHHcccceEEe
Q 008172 388 VADVSEAVRQYADALML 404 (575)
Q Consensus 388 v~Dv~nav~~G~D~vmL 404 (575)
-.+++.|...|+|+|++
T Consensus 231 g~~vaAA~alGAd~V~~ 247 (418)
T cd04742 231 PEAAAAAFALGADFIVT 247 (418)
T ss_pred HHHHHHHHHcCCcEEee
Confidence 34678899999999988
No 136
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=79.17 E-value=33 Score=36.19 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=76.9
Q ss_pred EecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHH
Q 008172 283 AMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCR 361 (575)
Q Consensus 283 ~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~ 361 (575)
.+.-.+++++|+++++.. ++.||+|+-.-- +...+.+.+. +|.| | ..+..-+ -..++...+
T Consensus 56 g~~Rm~~p~~I~aIk~~V------~iPVigk~Righ-~~Ea~~L~~~GvDiI-----D-~Te~lrp-----ad~~~~~~K 117 (293)
T PRK04180 56 GVARMADPKMIEEIMDAV------SIPVMAKARIGH-FVEAQILEALGVDYI-----D-ESEVLTP-----ADEEYHIDK 117 (293)
T ss_pred CeeecCCHHHHHHHHHhC------CCCeEEeehhhH-HHHHHHHHHcCCCEE-----e-ccCCCCc-----hHHHHHHHH
Confidence 345567888998888755 366777663211 5555666665 7888 4 3333222 113333333
Q ss_pred H-cCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhh
Q 008172 362 Q-LNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELW 431 (575)
Q Consensus 362 ~-~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~ 431 (575)
. .+.|+++-. +.+.+.-+++..|+|.|--+||...|+ -+|||+-|+.|..+.-..
T Consensus 118 ~~f~~~fmad~--------------~~l~EAlrai~~GadmI~Ttge~gtg~-v~~av~h~r~~~~~i~~L 173 (293)
T PRK04180 118 WDFTVPFVCGA--------------RNLGEALRRIAEGAAMIRTKGEAGTGN-VVEAVRHMRQINGEIRRL 173 (293)
T ss_pred HHcCCCEEccC--------------CCHHHHHHHHHCCCCeeeccCCCCCcc-HHHHHHHHHHHHHHHHHH
Confidence 3 488887522 234556788999999999999999998 589999999998776543
No 137
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=79.16 E-value=52 Score=33.43 Aligned_cols=131 Identities=18% Similarity=0.230 Sum_probs=74.3
Q ss_pred cCHHHHHHHHHcCCCEEEecC--cCChhhHHHHHHHHhccCCCCceEEeeec---------------------CHHHHhc
Q 008172 266 KDWDDIEFGIAEGVDFIAMSF--VCDADSVRHLKKYVSGKSSRSIKVLAKIE---------------------NLESLQK 322 (575)
Q Consensus 266 kD~~di~~al~~gvd~I~~Sf--V~sa~dv~~ir~~l~~~~~~~i~IIaKIE---------------------t~~av~n 322 (575)
.+.++++..++.|+|.|++.- .++++.+.++.+.+.+ . +++.-+. ....++-
T Consensus 84 ~s~~~~~~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~g~---~--~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 158 (253)
T PRK02083 84 RSVEDARRLLRAGADKVSINSAAVANPELISEAADRFGS---Q--CIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEW 158 (253)
T ss_pred CCHHHHHHHHHcCCCEEEEChhHhhCcHHHHHHHHHcCC---C--CEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHH
Confidence 467888888889999988763 4677777777665521 1 1222221 1112233
Q ss_pred HHHHHhc-CCEEEEeCCC-CCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHH-ccc
Q 008172 323 FEEIVEA-SDGIMVARGD-LGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVR-QYA 399 (575)
Q Consensus 323 ldeI~~~-sDgImIaRGD-Lg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~-~G~ 399 (575)
++++.+. +|++++-.-+ =|..-++ + .+.+-+.++..+.|+|.+.-+. ...|+..+.. .|+
T Consensus 159 ~~~~~~~g~~~ii~~~i~~~g~~~g~-d----~~~i~~~~~~~~ipvia~GGv~------------s~~d~~~~~~~~G~ 221 (253)
T PRK02083 159 AKEVEELGAGEILLTSMDRDGTKNGY-D----LELTRAVSDAVNVPVIASGGAG------------NLEHFVEAFTEGGA 221 (253)
T ss_pred HHHHHHcCCCEEEEcCCcCCCCCCCc-C----HHHHHHHHhhCCCCEEEECCCC------------CHHHHHHHHHhCCc
Confidence 3444444 6887663211 1111222 2 2233344556789999976544 3456666665 599
Q ss_pred ceEEeccCcCCCCCHHHHH
Q 008172 400 DALMLSGESAIGPFGQKAV 418 (575)
Q Consensus 400 D~vmLs~ETa~G~yPveaV 418 (575)
|++|.+.=--.|.++.+.+
T Consensus 222 ~gvivg~al~~~~~~~~~~ 240 (253)
T PRK02083 222 DAALAASIFHFGEITIGEL 240 (253)
T ss_pred cEEeEhHHHHcCCCCHHHH
Confidence 9999974444577776543
No 138
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=79.08 E-value=27 Score=36.50 Aligned_cols=220 Identities=14% Similarity=0.005 Sum_probs=125.2
Q ss_pred CCCccCHHHHHHHH-Hc-CCCEEEec-CcCChhhHHHHHHHHhcc---C-CCCceEEeeecCHHHHhcHHHHHhc-CCEE
Q 008172 262 TLSKKDWDDIEFGI-AE-GVDFIAMS-FVCDADSVRHLKKYVSGK---S-SRSIKVLAKIENLESLQKFEEIVEA-SDGI 333 (575)
Q Consensus 262 ~lsekD~~di~~al-~~-gvd~I~~S-fV~sa~dv~~ir~~l~~~---~-~~~i~IIaKIEt~~av~nldeI~~~-sDgI 333 (575)
.+|.+++..|..++ +. |++.|=+. |.-+++|.+.+++..+.. + ...+.+++-+.+..+ ++..++. .|.|
T Consensus 15 ~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~A~~~g~~~i 91 (280)
T cd07945 15 SFSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKS---VDWIKSAGAKVL 91 (280)
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHH---HHHHHHCCCCEE
Confidence 45667777776664 55 99999875 557997777777765421 1 013566666665544 4444444 5766
Q ss_pred EEeC--CCCCC----CCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCC-CCChhhHhhHHH-HHHcccceEEec
Q 008172 334 MVAR--GDLGV----DIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYP-TPTRAEVADVSE-AVRQYADALMLS 405 (575)
Q Consensus 334 mIaR--GDLg~----e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p-~PtrAEv~Dv~n-av~~G~D~vmLs 405 (575)
-+.= .|.-. ....+++....+++++.|+++|..|.+.-.. ..+| +-+.+.+.+++. +...|+|.+.|.
T Consensus 92 ~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d----~~~~~r~~~~~~~~~~~~~~~~G~~~i~l~ 167 (280)
T cd07945 92 NLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED----WSNGMRDSPDYVFQLVDFLSDLPIKRIMLP 167 (280)
T ss_pred EEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe----CCCCCcCCHHHHHHHHHHHHHcCCCEEEec
Confidence 5531 11100 0122555555678899999999888775321 1222 223445666665 556799999998
Q ss_pred cCcCCCCCHHHHHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcCCcEEEEEcCChhHH
Q 008172 406 GESAIGPFGQKAVSVLQMASSRMELWSREENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLGVDAIFVYTKHGHMA 485 (575)
Q Consensus 406 ~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~AkaIVVfT~SG~TA 485 (575)
+|.=.-.|.+..++++.+.+..... .+..+. -++ ..+|.+-..+|-..+|+ .|=-|-.|--
T Consensus 168 -DT~G~~~P~~v~~l~~~l~~~~~~~--------~i~~H~------Hnd--~Gla~AN~laA~~aGa~-~vd~s~~GlG- 228 (280)
T cd07945 168 -DTLGILSPFETYTYISDMVKRYPNL--------HFDFHA------HND--YDLAVANVLAAVKAGIK-GLHTTVNGLG- 228 (280)
T ss_pred -CCCCCCCHHHHHHHHHHHHhhCCCC--------eEEEEe------CCC--CCHHHHHHHHHHHhCCC-EEEEeccccc-
Confidence 8888889999888877764322110 000000 011 23555556667788887 3444444433
Q ss_pred HHHhccCCCCcEEEEcCcHHHHHHhcccCCcE
Q 008172 486 SLLSRNRPNPPIFAFTNDDSTRMALNLQWGVI 517 (575)
Q Consensus 486 r~VSr~RP~~PIiAvT~~~~~aR~L~L~~GV~ 517 (575)
. |+ .-++-+.++.-|+...|+.
T Consensus 229 e-----~a-----GN~~~E~~v~~L~~~~g~~ 250 (280)
T cd07945 229 E-----RA-----GNAPLASVIAVLKDKLKVK 250 (280)
T ss_pred c-----cc-----cCccHHHHHHHHHHhcCCC
Confidence 1 11 1145566666665445654
No 139
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=78.74 E-value=49 Score=35.23 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=25.2
Q ss_pred CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEecc
Q 008172 364 NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSG 406 (575)
Q Consensus 364 gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ 406 (575)
..|+|.+.-+- .-.|+..++..|||+++++.
T Consensus 255 ~ipIiasGGIr------------~~~dv~kal~lGAd~V~i~~ 285 (326)
T cd02811 255 DLPLIASGGIR------------NGLDIAKALALGADLVGMAG 285 (326)
T ss_pred CCcEEEECCCC------------CHHHHHHHHHhCCCEEEEcH
Confidence 68988876544 34789999999999999974
No 140
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=78.70 E-value=69 Score=31.90 Aligned_cols=195 Identities=17% Similarity=0.183 Sum_probs=106.4
Q ss_pred CCccCHHHH-HHHHHcCCCEEEec-CcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhc-HHHHHhc-CCEEEEe--
Q 008172 263 LSKKDWDDI-EFGIAEGVDFIAMS-FVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQK-FEEIVEA-SDGIMVA-- 336 (575)
Q Consensus 263 lsekD~~di-~~al~~gvd~I~~S-fV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~n-ldeI~~~-sDgImIa-- 336 (575)
++..++..+ +...+.|+|.|=+. ..-+.++...++.+.+......+..+... ..+.++. ++.+.+. .|.+.+.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~g~~~i~i~~~ 89 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPNARLQALCRA-NEEDIERAVEAAKEAGIDIIRIFIS 89 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSSEEEEEEES-CHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcccccceeeee-hHHHHHHHHHhhHhccCCEEEecCc
Confidence 555665554 44557999999888 45567777777776554322222223332 2223333 3333333 6776664
Q ss_pred CCCCCC----CCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHH-cccceEEeccCcCCC
Q 008172 337 RGDLGV----DIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVR-QYADALMLSGESAIG 411 (575)
Q Consensus 337 RGDLg~----e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~-~G~D~vmLs~ETa~G 411 (575)
-.|+-. ....+......+++++.++++|..+.+.. ....+.+.+++.+++..+. .|+|.+.|. +|.=.
T Consensus 90 ~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~------~~~~~~~~~~~~~~~~~~~~~g~~~i~l~-Dt~G~ 162 (237)
T PF00682_consen 90 VSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGC------EDASRTDPEELLELAEALAEAGADIIYLA-DTVGI 162 (237)
T ss_dssp TSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEE------TTTGGSSHHHHHHHHHHHHHHT-SEEEEE-ETTS-
T ss_pred ccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCc------cccccccHHHHHHHHHHHHHcCCeEEEee-CccCC
Confidence 111000 01113345555688999999999997753 2335677888888888665 499999998 88878
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcCCcEEEEEcCCh
Q 008172 412 PFGQKAVSVLQMASSRMELWSREENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLGVDAIFVYTKHG 482 (575)
Q Consensus 412 ~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~AkaIVVfT~SG 482 (575)
-.|.+.-+.++.+-++.-.. .+..+. -++ ..+|.+...+|-+.+|+- |=-|-.|
T Consensus 163 ~~P~~v~~lv~~~~~~~~~~--------~l~~H~------Hnd--~Gla~An~laA~~aGa~~-id~t~~G 216 (237)
T PF00682_consen 163 MTPEDVAELVRALREALPDI--------PLGFHA------HND--LGLAVANALAALEAGADR-IDGTLGG 216 (237)
T ss_dssp S-HHHHHHHHHHHHHHSTTS--------EEEEEE------BBT--TS-HHHHHHHHHHTT-SE-EEEBGGG
T ss_pred cCHHHHHHHHHHHHHhccCC--------eEEEEe------cCC--ccchhHHHHHHHHcCCCE-EEccCcc
Confidence 88988777666554332210 000000 011 234555666777889984 4444443
No 141
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=78.40 E-value=67 Score=31.07 Aligned_cols=132 Identities=19% Similarity=0.204 Sum_probs=74.3
Q ss_pred HHHHHHHHHcCCCEEEec-----CcCC-hhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCCC
Q 008172 268 WDDIEFGIAEGVDFIAMS-----FVCD-ADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARGDL 340 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~S-----fV~s-a~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGDL 340 (575)
.++++.+.+.|+|.|-+- |+.+ ......++++-.... ..+.+-.|....+ +-++.+.+. +||+.+- +
T Consensus 14 ~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~-~~v~v~lm~~~~~--~~~~~~~~~gadgv~vh-~-- 87 (210)
T TIGR01163 14 GEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTD-LPIDVHLMVENPD--RYIEDFAEAGADIITVH-P-- 87 (210)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCC-CcEEEEeeeCCHH--HHHHHHHHcCCCEEEEc-c--
Confidence 356777888999999883 7644 333333333332211 2233446776653 446677666 8998883 1
Q ss_pred CCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEecc--CcCCC-CCHHHH
Q 008172 341 GVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSG--ESAIG-PFGQKA 417 (575)
Q Consensus 341 g~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~--ETa~G-~yPvea 417 (575)
..+ ......++.++++|..+++... +. |.. +...++..++|.+++.+ .+..| .++...
T Consensus 88 ----~~~---~~~~~~~~~~~~~g~~~~~~~~--------~~-t~~---e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~ 148 (210)
T TIGR01163 88 ----EAS---EHIHRLLQLIKDLGAKAGIVLN--------PA-TPL---EFLEYVLPDVDLVLLMSVNPGFGGQKFIPDT 148 (210)
T ss_pred ----CCc---hhHHHHHHHHHHcCCcEEEEEC--------CC-CCH---HHHHHHHhhCCEEEEEEEcCCCCcccccHHH
Confidence 111 2235677889999988776421 11 222 22455567889887732 12223 455566
Q ss_pred HHHHHHH
Q 008172 418 VSVLQMA 424 (575)
Q Consensus 418 V~~m~~I 424 (575)
++.++.+
T Consensus 149 ~~~i~~i 155 (210)
T TIGR01163 149 LEKIREV 155 (210)
T ss_pred HHHHHHH
Confidence 6655554
No 142
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=78.34 E-value=25 Score=34.22 Aligned_cols=117 Identities=20% Similarity=0.178 Sum_probs=66.1
Q ss_pred CCccCHHHHHHHHHcCCCEEEec--CcCC---hhhHHHHHHHHhccCCCCceEEe--eecCHHHHhcHHHHHhc-CCEEE
Q 008172 263 LSKKDWDDIEFGIAEGVDFIAMS--FVCD---ADSVRHLKKYVSGKSSRSIKVLA--KIENLESLQKFEEIVEA-SDGIM 334 (575)
Q Consensus 263 lsekD~~di~~al~~gvd~I~~S--fV~s---a~dv~~ir~~l~~~~~~~i~IIa--KIEt~~av~nldeI~~~-sDgIm 334 (575)
.+.++...+-.+++.|+++|=+. + .+ .+.++++|+.. . +..+++ |+-++... .+++..+. +|.|.
T Consensus 9 ~~~~~a~~~~~~l~~~v~~iev~~~l-~~~~g~~~i~~l~~~~---~--~~~i~~d~k~~d~~~~-~~~~~~~~Gad~i~ 81 (206)
T TIGR03128 9 LDIEEALELAEKVADYVDIIEIGTPL-IKNEGIEAVKEMKEAF---P--DRKVLADLKTMDAGEY-EAEQAFAAGADIVT 81 (206)
T ss_pred CCHHHHHHHHHHcccCeeEEEeCCHH-HHHhCHHHHHHHHHHC---C--CCEEEEEEeeccchHH-HHHHHHHcCCCEEE
Confidence 34455555666678899998874 3 22 33344444322 1 223442 33344322 45666665 89887
Q ss_pred EeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 335 VARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 335 IaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
+-- +.+ +..-+++++.|+++|++++++- +.|.. -..++..+...|+|.+.+.
T Consensus 82 vh~-----~~~----~~~~~~~i~~~~~~g~~~~~~~---------~~~~t-~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 82 VLG-----VAD----DATIKGAVKAAKKHGKEVQVDL---------INVKD-KVKRAKELKELGADYIGVH 133 (206)
T ss_pred Eec-----cCC----HHHHHHHHHHHHHcCCEEEEEe---------cCCCC-hHHHHHHHHHcCCCEEEEc
Confidence 741 111 2234788999999999999841 01211 1234455666799988774
No 143
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=78.18 E-value=14 Score=37.19 Aligned_cols=101 Identities=17% Similarity=0.248 Sum_probs=58.9
Q ss_pred CcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcC-C--EEEEeCC------------CCCCCCCCCChH
Q 008172 286 FVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEAS-D--GIMVARG------------DLGVDIPLEQIP 350 (575)
Q Consensus 286 fV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~s-D--gImIaRG------------DLg~e~~~e~v~ 350 (575)
...+++++..+-+.+-+.|.+-+-|-- -++.+++.|.++.+.. | .++||-| +.|.++=. -|
T Consensus 20 r~~~~~~a~~~~~al~~~Gi~~iEit~--~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv--sP 95 (213)
T PRK06552 20 RGESKEEALKISLAVIKGGIKAIEVTY--TNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV--SP 95 (213)
T ss_pred ECCCHHHHHHHHHHHHHCCCCEEEEEC--CCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE--CC
Confidence 344566666665555544422222222 2555666666665553 2 3666554 12222211 12
Q ss_pred HHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEe
Q 008172 351 TVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALML 404 (575)
Q Consensus 351 ~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmL 404 (575)
.....+++.|+++|.|++ |--.-.+++..|...|+|.+-+
T Consensus 96 ~~~~~v~~~~~~~~i~~i--------------PG~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 96 SFNRETAKICNLYQIPYL--------------PGCMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred CCCHHHHHHHHHcCCCEE--------------CCcCCHHHHHHHHHcCCCEEEE
Confidence 344689999999999999 3333446668888999999998
No 144
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=78.16 E-value=42 Score=34.02 Aligned_cols=133 Identities=13% Similarity=0.067 Sum_probs=79.1
Q ss_pred HHHHHHHHHcCCCEEEecCcC----------ChhhHHHHHHHHhccCCCCceEEe----------eec---CHHHHhcHH
Q 008172 268 WDDIEFGIAEGVDFIAMSFVC----------DADSVRHLKKYVSGKSSRSIKVLA----------KIE---NLESLQKFE 324 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV~----------sa~dv~~ir~~l~~~~~~~i~IIa----------KIE---t~~av~nld 324 (575)
.+.++++-++|+|+|=+++.. +.+++.++++.+.+.|. .+.-+. .-+ ..++++.+.
T Consensus 19 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl-~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~ 97 (284)
T PRK13210 19 EERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGV-RIPSMCLSGHRRFPFGSRDPATRERALEIMK 97 (284)
T ss_pred HHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCC-CceEEecccccCcCCCCCCHHHHHHHHHHHH
Confidence 456788999999999887543 46789999999988772 221111 001 134677777
Q ss_pred HHHhc-----CCEEEEeCCCCCCCCC----CCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHH
Q 008172 325 EIVEA-----SDGIMVARGDLGVDIP----LEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAV 395 (575)
Q Consensus 325 eI~~~-----sDgImIaRGDLg~e~~----~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav 395 (575)
..++. ++.|.+.-++...+-. .+.+...-+++.+.+.++|..+.+ |-|-..-.++.++..++..++
T Consensus 98 ~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l-----E~~~~~~~~~~~~~~~l~~~v 172 (284)
T PRK13210 98 KAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAV-----EIMDTPFMNSISKWKKWDKEI 172 (284)
T ss_pred HHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEE-----EecCccccCCHHHHHHHHHHc
Confidence 77666 5777775333211111 123333445677778888876653 444333456777777777766
Q ss_pred HcccceEEeccCc
Q 008172 396 RQYADALMLSGES 408 (575)
Q Consensus 396 ~~G~D~vmLs~ET 408 (575)
+.+.+-+.-++
T Consensus 173 --~~~~~~~~~D~ 183 (284)
T PRK13210 173 --DSPWLTVYPDV 183 (284)
T ss_pred --CCCceeEEecC
Confidence 33444444343
No 145
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=78.01 E-value=41 Score=37.12 Aligned_cols=147 Identities=21% Similarity=0.241 Sum_probs=73.7
Q ss_pred ccccccccCCCCEEEEe--------CCeeEEEEEEEECCeEEEEEecCeEecCCc---ccccccCccc-ccccccCCCCC
Q 008172 197 YAGFSEGIEVGDELVID--------GGMASFEVIEKVGNDLRCKCTDPGVFLPRA---KLSFRRNGIL-VERNHGLPTLS 264 (575)
Q Consensus 197 ~~~l~~~v~~Gd~IliD--------DG~i~l~V~~~~~~~i~~~V~~gG~l~s~K---~vn~~r~g~~-~~~~~~lp~ls 264 (575)
+..+.-.++.|++|++. .|.++|.|.++....+ |.+.-.. .-.+...|-. ++...++|.++
T Consensus 63 ~~~~~~~~~~G~~v~v~g~~~~y~~~g~~ql~v~~i~~~g~-------G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p 135 (438)
T PRK00286 63 ARRLKFKPEEGMKVLVRGKVSLYEPRGDYQLIVEEIEPAGI-------GALAAAFEQLKEKLAAEGLFDPERKKPLPFFP 135 (438)
T ss_pred hhcCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEeeeCCc-------cHHHHHHHHHHHHHHHCCCCChhhcCCCCCCC
Confidence 44454567889998874 5777777777654321 2111100 0000011111 13445677654
Q ss_pred ccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc--------CCEEEEe
Q 008172 265 KKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA--------SDGIMVA 336 (575)
Q Consensus 265 ekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~--------sDgImIa 336 (575)
.+ |++=--.+++-++.+.+.+..+. ..+.+..-==..+|-....+|++. .|.|+|+
T Consensus 136 ~~---------------I~viTs~~gAa~~D~~~~~~~r~-p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~ 199 (438)
T PRK00286 136 KR---------------IGVITSPTGAAIRDILTVLRRRF-PLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVA 199 (438)
T ss_pred CE---------------EEEEeCCccHHHHHHHHHHHhcC-CCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEe
Confidence 22 33333356666777777666553 222222111111222222222222 4999999
Q ss_pred CCCCCCCCCCCChHHH-HHHHHHHHHHcCCCEEEe
Q 008172 337 RGDLGVDIPLEQIPTV-QEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 337 RGDLg~e~~~e~v~~~-Qk~Ii~~c~~~gKPviva 370 (575)
||-=+ .|++... .+.++++..+...|||.|
T Consensus 200 RGGGS----~eDL~~Fn~e~v~~ai~~~~~Pvis~ 230 (438)
T PRK00286 200 RGGGS----LEDLWAFNDEAVARAIAASRIPVISA 230 (438)
T ss_pred cCCCC----HHHhhccCcHHHHHHHHcCCCCEEEe
Confidence 99421 1222221 346777888889999987
No 146
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=78.00 E-value=73 Score=34.64 Aligned_cols=155 Identities=11% Similarity=0.054 Sum_probs=94.7
Q ss_pred CCCccCHHHHHHH-HHcCCCEEEecCcCCh-hhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEe--
Q 008172 262 TLSKKDWDDIEFG-IAEGVDFIAMSFVCDA-DSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVA-- 336 (575)
Q Consensus 262 ~lsekD~~di~~a-l~~gvd~I~~SfV~sa-~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIa-- 336 (575)
.+|.+++..|-.. .+.|+|.|=+.|-... ++.+.++.+.+ .+ .+..+++-.-. -.+.++..++. .|.|-+.
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~-~~-~~~~i~~~~r~--~~~di~~a~~~g~~~i~i~~~ 97 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAK-LG-LNASILALNRA--VKSDIDASIDCGVDAVHIFIA 97 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHHh-cC-CCeEEEEEccc--CHHHHHHHHhCCcCEEEEEEc
Confidence 4566676655554 4689999977665444 33344554443 33 33445444211 13344554544 5665442
Q ss_pred CCCC----CCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHH-HHcccceEEeccCcCCC
Q 008172 337 RGDL----GVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEA-VRQYADALMLSGESAIG 411 (575)
Q Consensus 337 RGDL----g~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~na-v~~G~D~vmLs~ETa~G 411 (575)
-.|+ -.....++.....+..++.+++.|..|.+. .....+-+...+.+++.+ ...|+|.+.|. +|.=.
T Consensus 98 ~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~------~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~-DT~G~ 170 (378)
T PRK11858 98 TSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS------AEDASRTDLDFLIEFAKAAEEAGADRVRFC-DTVGI 170 (378)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE------eccCCCCCHHHHHHHHHHHHhCCCCEEEEe-ccCCC
Confidence 2221 001122444555668888999999988874 224455667777777764 55799999998 88888
Q ss_pred CCHHHHHHHHHHHHHH
Q 008172 412 PFGQKAVSVLQMASSR 427 (575)
Q Consensus 412 ~yPveaV~~m~~I~~~ 427 (575)
-.|.+.-++++.+.+.
T Consensus 171 ~~P~~v~~lv~~l~~~ 186 (378)
T PRK11858 171 LDPFTMYELVKELVEA 186 (378)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8999988888777544
No 147
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=77.94 E-value=8.4 Score=44.01 Aligned_cols=150 Identities=13% Similarity=0.178 Sum_probs=98.9
Q ss_pred HHHHHHHHHcCCCEE--EecCcCChhhHHHHHHHHhccCCCCceEEeeecC--HHHHhcHHHHHhcCCEEEEeCCCCCC-
Q 008172 268 WDDIEFGIAEGVDFI--AMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIEN--LESLQKFEEIVEASDGIMVARGDLGV- 342 (575)
Q Consensus 268 ~~di~~al~~gvd~I--~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt--~~av~nldeI~~~sDgImIaRGDLg~- 342 (575)
.+.|....+.|+|.| +++-.+.|+.+.++++.|...| -++.++|-|-- .-|+. -++.+|.|=|.||.++-
T Consensus 48 v~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g-~~iPLVADIHF~~~~A~~----a~~~vdkiRINPGNi~~~ 122 (606)
T PRK00694 48 VRQICALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQG-ISIPLVADIHFFPQAAMH----VADFVDKVRINPGNYVDK 122 (606)
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccC-CCCCEEeecCCChHHHHH----HHHhcCceEECCcccCCc
Confidence 344556678899984 6666777777777788777776 57999999943 22222 22339999999999986
Q ss_pred -------CC-------CCCChHHHHHHHHHHHHHcCCCEEEehh-------hHHhhhcCCCCChhhH-----hhHHHHHH
Q 008172 343 -------DI-------PLEQIPTVQEIIIHVCRQLNKPVIVASQ-------LLESMVEYPTPTRAEV-----ADVSEAVR 396 (575)
Q Consensus 343 -------e~-------~~e~v~~~Qk~Ii~~c~~~gKPvivaTq-------~LeSM~~~p~PtrAEv-----~Dv~nav~ 396 (575)
++ .++++..--+.++++|+++|+|+=+-++ +++.. .+|..-+ .-+.-+-.
T Consensus 123 ~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~y----G~tpegmVeSAle~~~i~e~ 198 (606)
T PRK00694 123 RNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQRY----GDTIEGMVYSALEYIEVCEK 198 (606)
T ss_pred cccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh----CCCHHHHHHHHHHHHHHHHH
Confidence 11 2355666667999999999999977653 34332 1333222 22233567
Q ss_pred cccceEEeccCcCCCCCHHHHHHHHHHHHHHHh
Q 008172 397 QYADALMLSGESAIGPFGQKAVSVLQMASSRME 429 (575)
Q Consensus 397 ~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 429 (575)
.|++=+.+|--+ ..|...|+.-+.++++.+
T Consensus 199 ~~f~diviS~Ks---Snv~~mi~AyrlLa~~~d 228 (606)
T PRK00694 199 LDYRDVVFSMKS---SNPKVMVAAYRQLAKDLD 228 (606)
T ss_pred CCCCcEEEEEEc---CCHHHHHHHHHHHHHHhh
Confidence 888889988544 456667776666665554
No 148
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=77.15 E-value=72 Score=31.86 Aligned_cols=119 Identities=15% Similarity=0.175 Sum_probs=72.5
Q ss_pred HHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhh
Q 008172 354 EIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSR 433 (575)
Q Consensus 354 k~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 433 (575)
.-+...|+..|.|+++. .|....-..+...-..|++.+...+. | -++.+..++++++-..++
T Consensus 63 ~alA~~a~~~g~~~~v~-----------~p~~~~~~~~~~~~~~Ga~v~~~~~~-----~-~~~~~~a~~~~~~~~~~~- 124 (244)
T cd00640 63 IALAAAAARLGLKCTIV-----------MPEGASPEKVAQMRALGAEVVLVPGD-----F-DDAIALAKELAEEDPGAY- 124 (244)
T ss_pred HHHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHCCCEEEEECCC-----H-HHHHHHHHHHHHhCCCCE-
Confidence 35667899999999985 34444455566677789998777543 3 355555554433211111
Q ss_pred hhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcC---CcEEEEEcCChhHHHHHhc----cCCCCcEEEEcC
Q 008172 434 EENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLG---VDAIFVYTKHGHMASLLSR----NRPNPPIFAFTN 502 (575)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~---AkaIVVfT~SG~TAr~VSr----~RP~~PIiAvT~ 502 (575)
..++.. .....+.....+.++.++++ .+.||+.+-+|.|+--+++ .+|...|+++-+
T Consensus 125 ---------~~~~~~---n~~~~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 125 ---------YVNQFD---NPANIAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred ---------ecCCCC---CHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 111110 11122333455566676775 5899999999997775544 568899999865
No 149
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=76.90 E-value=64 Score=32.76 Aligned_cols=93 Identities=23% Similarity=0.359 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCCCEEE--ecC---cCChhhHHHHH--------------HHHhccC-CCCceEEeeec-CH---HHHhcH
Q 008172 268 WDDIEFGIAEGVDFIA--MSF---VCDADSVRHLK--------------KYVSGKS-SRSIKVLAKIE-NL---ESLQKF 323 (575)
Q Consensus 268 ~~di~~al~~gvd~I~--~Sf---V~sa~dv~~ir--------------~~l~~~~-~~~i~IIaKIE-t~---~av~nl 323 (575)
.+.++...+.|+|+|= +|| +-+...++.+- +.+++.. ..++.++.+.. ++ .|++++
T Consensus 17 ~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~f 96 (242)
T cd04724 17 LEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQYGLERF 96 (242)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHH
Confidence 4556666778999954 455 55555555321 1122111 11355666665 43 244554
Q ss_pred -HHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 324 -EEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 324 -deI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
++..+. +||+++. || |+| -.+++++.|+++|...+++
T Consensus 97 i~~~~~aG~~giiip--Dl----~~e----e~~~~~~~~~~~g~~~i~~ 135 (242)
T cd04724 97 LRDAKEAGVDGLIIP--DL----PPE----EAEEFREAAKEYGLDLIFL 135 (242)
T ss_pred HHHHHHCCCcEEEEC--CC----CHH----HHHHHHHHHHHcCCcEEEE
Confidence 444444 7999995 55 332 4678999999999877753
No 150
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=76.65 E-value=62 Score=31.65 Aligned_cols=87 Identities=16% Similarity=0.203 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCCEEEe-----cCcCC----hhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCC
Q 008172 269 DDIEFGIAEGVDFIAM-----SFVCD----ADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARG 338 (575)
Q Consensus 269 ~di~~al~~gvd~I~~-----SfV~s----a~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRG 338 (575)
+.++.+.+.|+|+|-+ +|+.+ .+.++++++.+. ....+-.++-. ..+.++.+.+. +||+.+--+
T Consensus 20 ~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~----~~~~v~l~v~d--~~~~i~~~~~~g~d~v~vh~~ 93 (220)
T PRK05581 20 EEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTK----LPLDVHLMVEN--PDRYVPDFAKAGADIITFHVE 93 (220)
T ss_pred HHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCC----CcEEEEeeeCC--HHHHHHHHHHcCCCEEEEeec
Confidence 5567888999999999 98854 555555554332 11223344443 33346666665 799777311
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHcCCCEEEeh
Q 008172 339 DLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVAS 371 (575)
Q Consensus 339 DLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaT 371 (575)
.. ......++.+++.|..+++++
T Consensus 94 -------~~---~~~~~~~~~~~~~~~~~g~~~ 116 (220)
T PRK05581 94 -------AS---EHIHRLLQLIKSAGIKAGLVL 116 (220)
T ss_pred -------cc---hhHHHHHHHHHHcCCEEEEEE
Confidence 11 223456889999999888753
No 151
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=76.62 E-value=5.3 Score=43.19 Aligned_cols=52 Identities=25% Similarity=0.394 Sum_probs=43.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHH
Q 008172 89 RKTKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQL 140 (575)
Q Consensus 89 r~tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~ 140 (575)
.+-.+-+.+||.-.+.|..++|+++|+|++=|.-+||..+...+.++.+|+.
T Consensus 95 ~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~ 146 (352)
T PF00478_consen 95 GRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKK 146 (352)
T ss_dssp SCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHh
Confidence 3567778899998899999999999999999999999999887777777643
No 152
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=76.55 E-value=72 Score=34.24 Aligned_cols=146 Identities=15% Similarity=0.134 Sum_probs=91.3
Q ss_pred CCCccCHHHHHHHH-HcCCCEEEe---------cCc-C--ChhhHHHHHHHHhccCCCCceEEeee----cCHHHHhcHH
Q 008172 262 TLSKKDWDDIEFGI-AEGVDFIAM---------SFV-C--DADSVRHLKKYVSGKSSRSIKVLAKI----ENLESLQKFE 324 (575)
Q Consensus 262 ~lsekD~~di~~al-~~gvd~I~~---------SfV-~--sa~dv~~ir~~l~~~~~~~i~IIaKI----Et~~av~nld 324 (575)
.+|..++..+-.++ +.|+|.|=+ ||. . ...+.+.++.+.... ++.++.+.+ -+. +.++
T Consensus 21 ~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~--~~~~~~~ll~pg~~~~---~dl~ 95 (337)
T PRK08195 21 QYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVV--KQAKIAALLLPGIGTV---DDLK 95 (337)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhC--CCCEEEEEeccCcccH---HHHH
Confidence 45667766666555 689999977 443 1 112333444433322 234555543 232 2334
Q ss_pred HHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHH-HHcccceE
Q 008172 325 EIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEA-VRQYADAL 402 (575)
Q Consensus 325 eI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~na-v~~G~D~v 402 (575)
.-.+. .|.|-|+ ....+. ..-++.++.++++|.-+.+. +. ..+..+.+++.+.+.. ...|+|++
T Consensus 96 ~a~~~gvd~iri~-------~~~~e~-~~~~~~i~~ak~~G~~v~~~--l~----~a~~~~~e~l~~~a~~~~~~Ga~~i 161 (337)
T PRK08195 96 MAYDAGVRVVRVA-------THCTEA-DVSEQHIGLARELGMDTVGF--LM----MSHMAPPEKLAEQAKLMESYGAQCV 161 (337)
T ss_pred HHHHcCCCEEEEE-------EecchH-HHHHHHHHHHHHCCCeEEEE--EE----eccCCCHHHHHHHHHHHHhCCCCEE
Confidence 43443 7888775 122222 34588999999999887763 22 2256788888887774 55699999
Q ss_pred EeccCcCCCCCHHHHHHHHHHHHHH
Q 008172 403 MLSGESAIGPFGQKAVSVLQMASSR 427 (575)
Q Consensus 403 mLs~ETa~G~yPveaV~~m~~I~~~ 427 (575)
.+. +|+=..+|.+.-+..+.+-++
T Consensus 162 ~i~-DT~G~~~P~~v~~~v~~l~~~ 185 (337)
T PRK08195 162 YVV-DSAGALLPEDVRDRVRALRAA 185 (337)
T ss_pred EeC-CCCCCCCHHHHHHHHHHHHHh
Confidence 997 898889998887777766543
No 153
>PRK09389 (R)-citramalate synthase; Provisional
Probab=76.26 E-value=60 Score=36.72 Aligned_cols=154 Identities=12% Similarity=0.100 Sum_probs=97.9
Q ss_pred CCCccCHHHH-HHHHHcCCCEEEec-CcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEe--
Q 008172 262 TLSKKDWDDI-EFGIAEGVDFIAMS-FVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVA-- 336 (575)
Q Consensus 262 ~lsekD~~di-~~al~~gvd~I~~S-fV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIa-- 336 (575)
.+|..++..| +...+.|+|.|=+. ++.+..|.+.++.+.+.. .+..|.+-.-.. .+.++..++. .|.|.+.
T Consensus 20 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~~--~~~~i~a~~r~~--~~di~~a~~~g~~~v~i~~~ 95 (488)
T PRK09389 20 SLTPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTDEG--LNAEICSFARAV--KVDIDAALECDVDSVHLVVP 95 (488)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHhcC--CCcEEEeecccC--HHHHHHHHhCCcCEEEEEEc
Confidence 3555665544 44557999999775 457788888887766533 345666655442 2345555554 5654442
Q ss_pred CCCCCC----CCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHH-HHcccceEEeccCcCCC
Q 008172 337 RGDLGV----DIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEA-VRQYADALMLSGESAIG 411 (575)
Q Consensus 337 RGDLg~----e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~na-v~~G~D~vmLs~ETa~G 411 (575)
-.|+-+ ....+++...-...++.|+++|..|.+. +....+.+..-+.+++.+ ...|+|.+.|. +|.=.
T Consensus 96 ~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~------~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~-DTvG~ 168 (488)
T PRK09389 96 TSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELS------GEDASRADLDFLKELYKAGIEAGADRICFC-DTVGI 168 (488)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEE------EeeCCCCCHHHHHHHHHHHHhCCCCEEEEe-cCCCC
Confidence 223211 1122344444557778899999887774 234556666667777764 45699999997 88889
Q ss_pred CCHHHHHHHHHHHHH
Q 008172 412 PFGQKAVSVLQMASS 426 (575)
Q Consensus 412 ~yPveaV~~m~~I~~ 426 (575)
..|.+.-++.+.+.+
T Consensus 169 ~~P~~~~~lv~~l~~ 183 (488)
T PRK09389 169 LTPEKTYELFKRLSE 183 (488)
T ss_pred cCHHHHHHHHHHHHh
Confidence 999998887776643
No 154
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=76.22 E-value=30 Score=40.55 Aligned_cols=147 Identities=16% Similarity=0.200 Sum_probs=93.9
Q ss_pred HHHHHHHHcCCCEE--EecCcCChhhHHHHHHHHhccCCCCceEEeeecC--HHHHhcHHHHHhcCCEEEEeCCCCCCCC
Q 008172 269 DDIEFGIAEGVDFI--AMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIEN--LESLQKFEEIVEASDGIMVARGDLGVDI 344 (575)
Q Consensus 269 ~di~~al~~gvd~I--~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt--~~av~nldeI~~~sDgImIaRGDLg~e~ 344 (575)
+.++...+.|+|.| +++-.+.|+.+.++++.|...+ -++.++|-|-- .-|+ +-++.+|.|=|.||.++-.-
T Consensus 114 ~Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g-~~iPLVADIHF~~~~Al----~a~~~vdkiRINPGN~~~~~ 188 (733)
T PLN02925 114 DQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKG-YNIPLVADIHFAPSVAL----RVAECFDKIRVNPGNFADRR 188 (733)
T ss_pred HHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcC-CCCCEEEecCCCHHHHH----HHHHhcCCeEECCcccCCcc
Confidence 44556678899995 5666666777777777777676 56999999943 2333 23344999999999998762
Q ss_pred ---C------------CCChHHHHHHHHHHHHHcCCCEEEehh-------hHHhhhcCCCCChhh-----HhhHHHHHHc
Q 008172 345 ---P------------LEQIPTVQEIIIHVCRQLNKPVIVASQ-------LLESMVEYPTPTRAE-----VADVSEAVRQ 397 (575)
Q Consensus 345 ---~------------~e~v~~~Qk~Ii~~c~~~gKPvivaTq-------~LeSM~~~p~PtrAE-----v~Dv~nav~~ 397 (575)
. ++++..--..++++|+++|+|+=+-|+ +|+.- .+|..- +.-+.-+-..
T Consensus 189 k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~y----Gdtp~gmVeSAle~~~i~e~~ 264 (733)
T PLN02925 189 AQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYY----GDSPRGMVESAFEFARICRKL 264 (733)
T ss_pred ccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh----CCChHHHHHHHHHHHHHHHHC
Confidence 1 123333334799999999999977653 33221 122111 1222335678
Q ss_pred ccceEEeccCcCCCCCHHHHHHHHHHHHHH
Q 008172 398 YADALMLSGESAIGPFGQKAVSVLQMASSR 427 (575)
Q Consensus 398 G~D~vmLs~ETa~G~yPveaV~~m~~I~~~ 427 (575)
|++=+.+|--.+ .|...|...+..+.+
T Consensus 265 ~f~diviS~KsS---n~~~~V~AyR~La~~ 291 (733)
T PLN02925 265 DYHNFVFSMKAS---NPVVMVQAYRLLVAE 291 (733)
T ss_pred CCCcEEEEEEcC---ChHHHHHHHHHHHHH
Confidence 999999985544 566666666666554
No 155
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=75.60 E-value=72 Score=33.15 Aligned_cols=123 Identities=19% Similarity=0.253 Sum_probs=67.1
Q ss_pred CChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-----CCEEEEeC---C---CCC-------CCC----C
Q 008172 288 CDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-----SDGIMVAR---G---DLG-------VDI----P 345 (575)
Q Consensus 288 ~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-----sDgImIaR---G---DLg-------~e~----~ 345 (575)
.+++.+.++-+.+++.- .+.|.+||-. .+++..++++. +|+|.+.- | |+. ... |
T Consensus 140 ~~~~~~~eiv~~vr~~~--~~pv~vKi~~--~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg 215 (300)
T TIGR01037 140 QDPELSADVVKAVKDKT--DVPVFAKLSP--NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSG 215 (300)
T ss_pred cCHHHHHHHHHHHHHhc--CCCEEEECCC--ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccc
Confidence 45566666666665432 4689999941 23334444432 79998741 1 211 110 1
Q ss_pred CCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHH
Q 008172 346 LEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMAS 425 (575)
Q Consensus 346 ~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~ 425 (575)
...-+...+.+-+.....+.|+|....+. ...|+..++..|+|+||+....- ..| .+.+++.
T Consensus 216 ~~~~~~~l~~v~~i~~~~~ipvi~~GGI~------------s~~da~~~l~~GAd~V~igr~~l--~~p----~~~~~i~ 277 (300)
T TIGR01037 216 PAIKPIALRMVYDVYKMVDIPIIGVGGIT------------SFEDALEFLMAGASAVQVGTAVY--YRG----FAFKKII 277 (300)
T ss_pred hhhhHHHHHHHHHHHhcCCCCEEEECCCC------------CHHHHHHHHHcCCCceeecHHHh--cCc----hHHHHHH
Confidence 11223333444444455689999765444 23466788889999999974322 345 2344455
Q ss_pred HHHhhhh
Q 008172 426 SRMELWS 432 (575)
Q Consensus 426 ~~aE~~~ 432 (575)
++.++|.
T Consensus 278 ~~l~~~~ 284 (300)
T TIGR01037 278 EGLIAFL 284 (300)
T ss_pred HHHHHHH
Confidence 5555443
No 156
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=75.28 E-value=26 Score=34.31 Aligned_cols=116 Identities=22% Similarity=0.236 Sum_probs=65.3
Q ss_pred cCHHHHHHHHHcCCCEEEecCcC-ChhhH-----HHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc--CCEEEEeC
Q 008172 266 KDWDDIEFGIAEGVDFIAMSFVC-DADSV-----RHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA--SDGIMVAR 337 (575)
Q Consensus 266 kD~~di~~al~~gvd~I~~SfV~-sa~dv-----~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~--sDgImIaR 337 (575)
++.++++.+++.|+|+|.+=|.. |+..+ +++++.+.. .+.-++=+-+. -++.+.+++.. .|+|-++-
T Consensus 7 ~~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~----~~~~V~v~vn~-~~~~i~~ia~~~~~d~Vqlhg 81 (203)
T cd00405 7 TTLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPP----FVKRVGVFVNE-DLEEILEIAEELGLDVVQLHG 81 (203)
T ss_pred CCHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCC----CCcEEEEEeCC-CHHHHHHHHHhcCCCEEEECC
Confidence 46789999999999999998854 44444 444444432 12223333332 25556666665 69998873
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHH-cCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcC
Q 008172 338 GDLGVDIPLEQIPTVQEIIIHVCRQ-LNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESA 409 (575)
Q Consensus 338 GDLg~e~~~e~v~~~Qk~Ii~~c~~-~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa 409 (575)
.| +. ..++..++ .|.+++-+-. ..+..+ .+...+...|+|.+++...|.
T Consensus 82 ~e-----~~--------~~~~~l~~~~~~~~i~~i~---------~~~~~~-~~~~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 82 DE-----SP--------EYCAQLRARLGLPVIKAIR---------VKDEED-LEKAAAYAGEVDAILLDSKSG 131 (203)
T ss_pred CC-----CH--------HHHHHHHhhcCCcEEEEEe---------cCChhh-HHHhhhccccCCEEEEcCCCC
Confidence 32 11 11222332 4778773321 111111 122456678999999966554
No 157
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=75.25 E-value=35 Score=35.69 Aligned_cols=112 Identities=19% Similarity=0.222 Sum_probs=64.7
Q ss_pred HHHHHHHHHcCCCEEEecCcCCh--------hhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEe-C
Q 008172 268 WDDIEFGIAEGVDFIAMSFVCDA--------DSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVA-R 337 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV~sa--------~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIa-R 337 (575)
.+.++.+.+.|+|.|.+.+ ..+ +.++++++.+ ...++.|.- ...+......+. +|+|.+. +
T Consensus 132 ~~~i~~~~~~g~~~i~l~~-~~p~~~~~~~~~~i~~l~~~~------~~pvivK~v--~s~~~a~~a~~~G~d~I~v~~~ 202 (299)
T cd02809 132 EDLLRRAEAAGYKALVLTV-DTPVLGRRLTWDDLAWLRSQW------KGPLILKGI--LTPEDALRAVDAGADGIVVSNH 202 (299)
T ss_pred HHHHHHHHHcCCCEEEEec-CCCCCCCCCCHHHHHHHHHhc------CCCEEEeec--CCHHHHHHHHHCCCCEEEEcCC
Confidence 3456777788999987754 222 4555655533 256888831 222333334444 8999884 2
Q ss_pred CCCCCCC--CCCChHHHHHHHHHHHHHc--CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEecc
Q 008172 338 GDLGVDI--PLEQIPTVQEIIIHVCRQL--NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSG 406 (575)
Q Consensus 338 GDLg~e~--~~e~v~~~Qk~Ii~~c~~~--gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ 406 (575)
| |..+ +.+. ...+.+.+... ..|+|.+.-+- --.|+..++..|||+||+..
T Consensus 203 g--G~~~~~g~~~----~~~l~~i~~~~~~~ipvia~GGI~------------~~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 203 G--GRQLDGAPAT----IDALPEIVAAVGGRIEVLLDGGIR------------RGTDVLKALALGADAVLIGR 257 (299)
T ss_pred C--CCCCCCCcCH----HHHHHHHHHHhcCCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEcH
Confidence 2 2222 1111 11122222223 48988865443 34688999999999999974
No 158
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=74.87 E-value=22 Score=38.26 Aligned_cols=261 Identities=15% Similarity=0.153 Sum_probs=144.6
Q ss_pred cccCCCCCccCHHH-------HHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc
Q 008172 257 NHGLPTLSKKDWDD-------IEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA 329 (575)
Q Consensus 257 ~~~lp~lsekD~~d-------i~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~ 329 (575)
++..-.+|..|-.| |+...+.|+|.|=+. |.+.++++.++.+.+. -++.++|-|-- +---.+.++.+-
T Consensus 19 PI~VQSMtnt~T~Dv~atv~QI~~L~~aGceiVRva-vp~~~~A~al~~I~~~---~~iPlVADIHF-d~~lAl~a~~~g 93 (346)
T TIGR00612 19 PIVVQSMTNTDTIDIDSTVAQIRALEEAGCDIVRVT-VPDRESAAAFEAIKEG---TNVPLVADIHF-DYRLAALAMAKG 93 (346)
T ss_pred cEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEc-CCCHHHHHhHHHHHhC---CCCCEEEeeCC-CcHHHHHHHHhc
Confidence 33444455444444 455567899997665 4677777777766542 45899999944 233345666677
Q ss_pred CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEeh-------hhHHhhhcCCCCChhhH-----hhHHHHHHc
Q 008172 330 SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVAS-------QLLESMVEYPTPTRAEV-----ADVSEAVRQ 397 (575)
Q Consensus 330 sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaT-------q~LeSM~~~p~PtrAEv-----~Dv~nav~~ 397 (575)
+|.|-|.||.+|- ..--+.++++|+++|+|+=+-. ++|+ +...||..-+ ..+.-+-..
T Consensus 94 ~dkiRINPGNig~-------~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~---kyg~~t~eamveSAl~~v~~le~~ 163 (346)
T TIGR00612 94 VAKVRINPGNIGF-------RERVRDVVEKARDHGKAMRIGVNHGSLERRLLE---KYGDATAEAMVQSALEEAAILEKL 163 (346)
T ss_pred cCeEEECCCCCCC-------HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHH---HcCCCCHHHHHHHHHHHHHHHHHC
Confidence 9999999999977 3556789999999999986543 2333 2334555332 233335567
Q ss_pred ccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcCCcEEEE
Q 008172 398 YADALMLSGESAIGPFGQKAVSVLQMASSRMELWSREENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLGVDAIFV 477 (575)
Q Consensus 398 G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~AkaIVV 477 (575)
|++=+.+|--.+ .+..+++.-+.+.++.+ |. .+ + ..-+........+..+++.++. +++-++-..=|-
T Consensus 164 ~F~diviS~KsS---dv~~~i~ayr~la~~~d----yP-LH--l-GVTEAG~~~~G~IKSaigig~L-L~~GIGDTIRVS 231 (346)
T TIGR00612 164 GFRNVVLSMKAS---DVAETVAAYRLLAERSD----YP-LH--L-GVTEAGMGVKGIVKSSAGIGIL-LARGIGDTIRVS 231 (346)
T ss_pred CCCcEEEEEEcC---CHHHHHHHHHHHHhhCC----CC-ce--e-ccccCCCCCCchhHHHHHHHHH-HhhCCCCeEEEE
Confidence 888888874433 34444444333322211 10 00 0 0000001122334455555553 444444443344
Q ss_pred EcCChhHHHHHhccCCCCcEEEEcCcHHHHHHhcc-cCCcEEEEecCC----CCHHHHHHHHHHHHHHcCCCCCCCEEEE
Q 008172 478 YTKHGHMASLLSRNRPNPPIFAFTNDDSTRMALNL-QWGVIPVLVNLS----DDMETNIAKTIDLIKMKGMVKYGDAVLV 552 (575)
Q Consensus 478 fT~SG~TAr~VSr~RP~~PIiAvT~~~~~aR~L~L-~~GV~Pvl~~~~----~d~d~~i~~al~~~~~~g~~k~GD~VVv 552 (575)
+|.+-----.++ .+..+.|.| .+|+.-+-+|.- -|.....++..+.+.. ++..=.|.+
T Consensus 232 LT~dP~~EV~va--------------~~IL~slglr~~g~~iiSCPtCGR~~~dl~~~~~~ve~~l~~---~~~~l~VAV 294 (346)
T TIGR00612 232 LTDDPTHEVPVA--------------FEILQSLGLRARGVEIVACPSCGRTGFDVEKVVRRVQEALFH---LKTPLKVAV 294 (346)
T ss_pred CCCCcHHHHHHH--------------HHHHHHcCCCcCCCeEEECCCCCCcCCCHHHHHHHHHHHHhc---CCCCCEEEE
Confidence 444332222222 367788888 477888888754 3565555555444443 344555666
Q ss_pred EecCCCCCC
Q 008172 553 VLDLTPAHV 561 (575)
Q Consensus 553 v~G~~~~~g 561 (575)
..-.-.|+|
T Consensus 295 MGCvVNGPG 303 (346)
T TIGR00612 295 MGCVVNGPG 303 (346)
T ss_pred ECceecCCc
Confidence 554433444
No 159
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=74.84 E-value=55 Score=32.74 Aligned_cols=128 Identities=16% Similarity=0.217 Sum_probs=67.9
Q ss_pred cCHHHHHHHHHcCCCEEEecC--cCChhhHHHHHHHHhccCCCCceEEeeecCH---------------HHHhcHHHHHh
Q 008172 266 KDWDDIEFGIAEGVDFIAMSF--VCDADSVRHLKKYVSGKSSRSIKVLAKIENL---------------ESLQKFEEIVE 328 (575)
Q Consensus 266 kD~~di~~al~~gvd~I~~Sf--V~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~---------------~av~nldeI~~ 328 (575)
++.++++.+++.|+|.|.+.- .++++-+.++.+.+.. . +|+.-|... .-++-..++.+
T Consensus 86 ~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~---~--~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~ 160 (241)
T PRK13585 86 RSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGS---E--RVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEE 160 (241)
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCC---C--cEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHH
Confidence 577889999999999987764 2344445555554421 1 233322210 11222233333
Q ss_pred c-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccC
Q 008172 329 A-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGE 407 (575)
Q Consensus 329 ~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~E 407 (575)
. +|.|++---+-.-.....+. +.+-+.++....|++.+..+- +.. |+......|+|++++..-
T Consensus 161 ~G~~~i~~~~~~~~g~~~g~~~----~~i~~i~~~~~iPvia~GGI~---------~~~---di~~~~~~Ga~gv~vgsa 224 (241)
T PRK13585 161 LGAGSILFTNVDVEGLLEGVNT----EPVKELVDSVDIPVIASGGVT---------TLD---DLRALKEAGAAGVVVGSA 224 (241)
T ss_pred cCCCEEEEEeecCCCCcCCCCH----HHHHHHHHhCCCCEEEeCCCC---------CHH---HHHHHHHcCCCEEEEEHH
Confidence 3 68887732111111111222 223344555679999876433 333 444456689999999755
Q ss_pred cCCCCCH
Q 008172 408 SAIGPFG 414 (575)
Q Consensus 408 Ta~G~yP 414 (575)
-..|.++
T Consensus 225 ~~~~~~~ 231 (241)
T PRK13585 225 LYKGKFT 231 (241)
T ss_pred HhcCCcC
Confidence 5455444
No 160
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=74.66 E-value=1e+02 Score=31.86 Aligned_cols=153 Identities=14% Similarity=0.081 Sum_probs=92.0
Q ss_pred CCCccCHHHHHHH-HHcCCCEEEecCc---------CChhhHHHHHHHHhccCCCCceEEeeecCHHH--------Hh-c
Q 008172 262 TLSKKDWDDIEFG-IAEGVDFIAMSFV---------CDADSVRHLKKYVSGKSSRSIKVLAKIENLES--------LQ-K 322 (575)
Q Consensus 262 ~lsekD~~di~~a-l~~gvd~I~~SfV---------~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~a--------v~-n 322 (575)
.++..++..+..+ .+.|+|.|=+-+- .+.++.+.++.+.+......+..++.-.+.-+ .+ .
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~d 96 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELF 96 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHH
Confidence 3566666555544 5689999865541 25555555555443222122333333222111 11 2
Q ss_pred HHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHcccc
Q 008172 323 FEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQYAD 400 (575)
Q Consensus 323 ldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~G~D 400 (575)
++...+. .|.|-|. .|..++. --+..++.++++|+-+.++ .+|...++.+.+.+.+++. +...|+|
T Consensus 97 i~~~~~~g~~~iri~-------~~~~~~~-~~~~~i~~ak~~G~~v~~~----i~~~~~~~~~~~~~~~~~~~~~~~Ga~ 164 (275)
T cd07937 97 VEKAAKNGIDIFRIF-------DALNDVR-NLEVAIKAVKKAGKHVEGA----ICYTGSPVHTLEYYVKLAKELEDMGAD 164 (275)
T ss_pred HHHHHHcCCCEEEEe-------ecCChHH-HHHHHHHHHHHCCCeEEEE----EEecCCCCCCHHHHHHHHHHHHHcCCC
Confidence 3333333 5777774 3444443 3456778889999877642 1344557778888888777 4566999
Q ss_pred eEEeccCcCCCCCHHHHHHHHHHHHHH
Q 008172 401 ALMLSGESAIGPFGQKAVSVLQMASSR 427 (575)
Q Consensus 401 ~vmLs~ETa~G~yPveaV~~m~~I~~~ 427 (575)
.+.|. +|.=.-.|.+.-++++.+.++
T Consensus 165 ~i~l~-DT~G~~~P~~v~~lv~~l~~~ 190 (275)
T cd07937 165 SICIK-DMAGLLTPYAAYELVKALKKE 190 (275)
T ss_pred EEEEc-CCCCCCCHHHHHHHHHHHHHh
Confidence 99998 888888899888877776543
No 161
>PLN03034 phosphoglycerate kinase; Provisional
Probab=74.46 E-value=14 Score=41.54 Aligned_cols=264 Identities=14% Similarity=0.182 Sum_probs=143.8
Q ss_pred CceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCH----HHHHHHHHHHHHHhhhcCCceEEEEeCCCCeEEEEecC
Q 008172 90 KTKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTR----EWHLDVIRKIKQLNHEKLFCISVMIDTEGSQIHVVDHG 165 (575)
Q Consensus 90 ~tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~----e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkIRtG~~~ 165 (575)
.|+|-+++ .+|+.|++.|..|.= +||-.. +....+-...+.+++-++++|...=|.-||+.+-
T Consensus 114 d~RI~a~l-------pTI~~L~~~gakvVl--~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~fv~d~~G~~~~~---- 180 (481)
T PLN03034 114 DTRIRAAI-------PTIKYLISNGAKVIL--SSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEK---- 180 (481)
T ss_pred hHhHHHHH-------HHHHHHHHCCCeEEE--EEecCCCCCCCcccCHHHHHHHHHHHhCCCeEECCCCCCHHHHH----
Confidence 46666654 589999999998765 477542 2222333444455677899998888888887651
Q ss_pred CCCceEEecCCEEEEEeeccCCCCCcEEEecccccccccCCCCEEEEeCCeeEEEEEEEECCeEEEEEecCeEecCCccc
Q 008172 166 EPNSVKVEEDSIWLFTAIKFEGSRPFTVKANYAGFSEGIEVGDELVIDGGMASFEVIEKVGNDLRCKCTDPGVFLPRAKL 245 (575)
Q Consensus 166 ~~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~i~~~V~~gG~l~s~K~v 245 (575)
.--.++.|+.+.|.+-.+..... -|.++|.+.+...-.||++|.-=. +|+.
T Consensus 181 --~i~~l~~GeVlLLENvRF~~eE~----~nd~~fa~~LA~l~DiyVNDAFgt----------------------aHR~- 231 (481)
T PLN03034 181 --LVASLPEGGVLLLENVRFYKEEE----KNEPEFAKKLASLADLYVNDAFGT----------------------AHRA- 231 (481)
T ss_pred --HHhcCCCCcEEEEeccCcCcccc----cCcHHHHHHHHhhCCEEEecchhh----------------------hHhc-
Confidence 11246788888887655443211 144567777776445899883110 0000
Q ss_pred ccccCcccccccccCCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEE--eeecCHHHHhcH
Q 008172 246 SFRRNGILVERNHGLPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVL--AKIENLESLQKF 323 (575)
Q Consensus 246 n~~r~g~~~~~~~~lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~II--aKIEt~~av~nl 323 (575)
-....|...-+| .....|.+ .+++..+.+.+..-...-+.|+ ||+.+.-++ |
T Consensus 232 ----haS~vGi~~~l~------ps~aG~Lm--------------ekEl~~L~k~~~~p~rP~vaIlGGaKVsdKI~v--i 285 (481)
T PLN03034 232 ----HASTEGVTKFLK------PSVAGFLL--------------QKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGV--I 285 (481)
T ss_pred ----ccchhhhhhhcC------cchhhHHH--------------HHHHHHHHHHHcCCCCceEEEEcCccHHhHHHH--H
Confidence 000001111111 01112222 2355555565543221123343 577765544 7
Q ss_pred HHHHhcCCEEEEeCC-------CCCCCCCC----CChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHH
Q 008172 324 EEIVEASDGIMVARG-------DLGVDIPL----EQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVS 392 (575)
Q Consensus 324 deI~~~sDgImIaRG-------DLg~e~~~----e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~ 392 (575)
+.+++.+|.+++|=| -+|.++|. ++....-++|++++.+.|+.+++-+...-.=...+...+ .+.++
T Consensus 286 ~~Ll~kvD~lliGG~ma~tFl~A~G~~IG~slvE~d~i~~A~~il~~a~~~gv~I~lPvD~v~a~~~~~~~~~-~~~~~- 363 (481)
T PLN03034 286 ESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELATSLLAKAKAKGVSLLLPTDVVIADKFAPDANS-KIVPA- 363 (481)
T ss_pred HHHHHhcCEEEECcHHHHHHHHHcCCCcchhhcChhhhHHHHHHHHHHHhcCCEEECCceEEEecccCCCCCe-EEeeh-
Confidence 888888999999833 35666663 445556679999999999988753322211000000111 11121
Q ss_pred HHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhh
Q 008172 393 EAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWS 432 (575)
Q Consensus 393 nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~ 432 (575)
+.+-+ |...|. +|. ++++...+++..+...+
T Consensus 364 ~~Ip~--~~~~lD----IGp---~Ti~~~~~~i~~akTI~ 394 (481)
T PLN03034 364 SAIPD--GWMGLD----IGP---DSVKTFNEALDTTQTVI 394 (481)
T ss_pred hcCCC--CCEEEe----cCH---HHHHHHHHHHhhCCEEE
Confidence 22222 334444 563 78888888888887644
No 162
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=74.46 E-value=30 Score=35.82 Aligned_cols=117 Identities=16% Similarity=0.187 Sum_probs=74.3
Q ss_pred HHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEE--EeCCCCCCCCCC
Q 008172 269 DDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIM--VARGDLGVDIPL 346 (575)
Q Consensus 269 ~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgIm--IaRGDLg~e~~~ 346 (575)
+-++.+.+.|+|++++|-.. .++.+++++.+++.|.+.+.+++- ..--+.+..|.+.+.|.+ +++ .|+ .|.
T Consensus 108 ~f~~~~~~aGvdGviipDLp-~ee~~~~~~~~~~~gl~~I~lvap---~t~~eri~~i~~~s~gfIY~vs~--~Gv-TG~ 180 (258)
T PRK13111 108 RFAADAAEAGVDGLIIPDLP-PEEAEELRAAAKKHGLDLIFLVAP---TTTDERLKKIASHASGFVYYVSR--AGV-TGA 180 (258)
T ss_pred HHHHHHHHcCCcEEEECCCC-HHHHHHHHHHHHHcCCcEEEEeCC---CCCHHHHHHHHHhCCCcEEEEeC--CCC-CCc
Confidence 34677889999999999874 578888888888776433333332 222457888999988865 454 332 222
Q ss_pred -CChHHHHHHHHHHHHHc-CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 347 -EQIPTVQEIIIHVCRQL-NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 347 -e~v~~~Qk~Ii~~c~~~-gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
...+.-....++.++++ ++|+++.. ..-++.++..+ . .++|++...
T Consensus 181 ~~~~~~~~~~~i~~vk~~~~~pv~vGf---------GI~~~e~v~~~---~-~~ADGviVG 228 (258)
T PRK13111 181 RSADAADLAELVARLKAHTDLPVAVGF---------GISTPEQAAAI---A-AVADGVIVG 228 (258)
T ss_pred ccCCCccHHHHHHHHHhcCCCcEEEEc---------ccCCHHHHHHH---H-HhCCEEEEc
Confidence 23344455566666654 89999854 34455544443 3 348998874
No 163
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=74.15 E-value=45 Score=36.04 Aligned_cols=154 Identities=11% Similarity=0.065 Sum_probs=92.0
Q ss_pred CCCccCHHHHHH-HHHcCCCEEEecCcCChh-hHHHHHHHHhccCCCCceEEeee-cCHHHHhcHHHHHhc-CCEEEEe-
Q 008172 262 TLSKKDWDDIEF-GIAEGVDFIAMSFVCDAD-SVRHLKKYVSGKSSRSIKVLAKI-ENLESLQKFEEIVEA-SDGIMVA- 336 (575)
Q Consensus 262 ~lsekD~~di~~-al~~gvd~I~~SfV~sa~-dv~~ir~~l~~~~~~~i~IIaKI-Et~~av~nldeI~~~-sDgImIa- 336 (575)
.+|..++..|-. ..+.|++.|=+.|-...+ +.+.++.+.+ .+ ....+.+-. -+.+. ++..++. .|.|.+.
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~-~~-~~~~i~~~~r~~~~d---i~~a~~~g~~~i~i~~ 93 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIVA-LG-LPARLMAWCRARDAD---IEAAARCGVDAVHISI 93 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHH-cC-CCcEEEEEcCCCHHH---HHHHHcCCcCEEEEEE
Confidence 456667655554 457999999876654443 3344554433 32 234455433 23333 3444444 5665553
Q ss_pred -CCCCCCC----CCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHcccceEEeccCcCC
Q 008172 337 -RGDLGVD----IPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQYADALMLSGESAI 410 (575)
Q Consensus 337 -RGDLg~e----~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~G~D~vmLs~ETa~ 410 (575)
-.|+-.+ ...++.....+..++.++++|..|-+. ....++-+...+.+++. +...|+|.+.|. +|.=
T Consensus 94 ~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~------~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~-DT~G 166 (365)
T TIGR02660 94 PVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVG------GEDASRADPDFLVELAEVAAEAGADRFRFA-DTVG 166 (365)
T ss_pred ccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEe------ecCCCCCCHHHHHHHHHHHHHcCcCEEEEc-ccCC
Confidence 1221000 112333444457889999999887764 23445556666777666 455799999997 8888
Q ss_pred CCCHHHHHHHHHHHHHH
Q 008172 411 GPFGQKAVSVLQMASSR 427 (575)
Q Consensus 411 G~yPveaV~~m~~I~~~ 427 (575)
.-.|.+.-++++.+.++
T Consensus 167 ~~~P~~v~~lv~~l~~~ 183 (365)
T TIGR02660 167 ILDPFSTYELVRALRQA 183 (365)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 89999998888777544
No 164
>PLN02321 2-isopropylmalate synthase
Probab=74.05 E-value=77 Score=37.08 Aligned_cols=158 Identities=13% Similarity=0.130 Sum_probs=94.9
Q ss_pred CCccCHHHHH-HHHHcCCCEEEecC-cCChhhHHHHHHHHhccCC--CCceEEeeec-----CHHHHhcHHHHHhcC---
Q 008172 263 LSKKDWDDIE-FGIAEGVDFIAMSF-VCDADSVRHLKKYVSGKSS--RSIKVLAKIE-----NLESLQKFEEIVEAS--- 330 (575)
Q Consensus 263 lsekD~~di~-~al~~gvd~I~~Sf-V~sa~dv~~ir~~l~~~~~--~~i~IIaKIE-----t~~av~nldeI~~~s--- 330 (575)
+|.+++-.|- ...+.|+|.|=+.| .-|+.|.+.++.+...... ..-..+++|= +.++++..-+-+.-+
T Consensus 105 ~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~~a~~~ 184 (632)
T PLN02321 105 LTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVKHAKRP 184 (632)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhcCCCCC
Confidence 5666665554 45579999998876 6777888887776543210 0111223332 334443222211111
Q ss_pred -CEEEEeCCCCCC----CCCCCChHHHHHHHHHHHHHcCCC-EEEehhhHHhhhcCCCCChhhHhhHHH-HHHcccceEE
Q 008172 331 -DGIMVARGDLGV----DIPLEQIPTVQEIIIHVCRQLNKP-VIVASQLLESMVEYPTPTRAEVADVSE-AVRQYADALM 403 (575)
Q Consensus 331 -DgImIaRGDLg~----e~~~e~v~~~Qk~Ii~~c~~~gKP-vivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~G~D~vm 403 (575)
=.++++-.|+-+ .+..+++...-+.+++.|+.+|.. |.+. +....+-.+..+.+++. ++..|+|.+.
T Consensus 185 ~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs------~EDa~rtd~d~l~~~~~~a~~aGa~~I~ 258 (632)
T PLN02321 185 RIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFS------PEDAGRSDPEFLYRILGEVIKAGATTLN 258 (632)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEe------cccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 234554444421 233466777778899999999985 5543 22223334444556665 5668999999
Q ss_pred eccCcCCCCCHHHHHHHHHHHHHH
Q 008172 404 LSGESAIGPFGQKAVSVLQMASSR 427 (575)
Q Consensus 404 Ls~ETa~G~yPveaV~~m~~I~~~ 427 (575)
|. +|.=...|.+.-+++..+.+.
T Consensus 259 L~-DTvG~~~P~~v~~li~~l~~~ 281 (632)
T PLN02321 259 IP-DTVGYTLPSEFGQLIADIKAN 281 (632)
T ss_pred ec-ccccCCCHHHHHHHHHHHHHh
Confidence 98 888899999998888877654
No 165
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=73.81 E-value=19 Score=38.67 Aligned_cols=121 Identities=16% Similarity=0.223 Sum_probs=66.5
Q ss_pred HcCCCEEEecCc----------CChhhHHHHHHHHhccCCC---CceEEeeecCHHHHhcHHHHHhc-----CCEEEEeC
Q 008172 276 AEGVDFIAMSFV----------CDADSVRHLKKYVSGKSSR---SIKVLAKIENLESLQKFEEIVEA-----SDGIMVAR 337 (575)
Q Consensus 276 ~~gvd~I~~SfV----------~sa~dv~~ir~~l~~~~~~---~i~IIaKIEt~~av~nldeI~~~-----sDgImIaR 337 (575)
..++|+|-+.|- +.++.+.++-+.+.+.-.+ ++.|++||----..+++.++++. +|||.+-=
T Consensus 167 ~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 167 YPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATN 246 (344)
T ss_pred HhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 336999877652 2334455554444332111 47899999632222234444443 79998853
Q ss_pred CCCCC----------CC-C---CCChHHHHHHHHHHHHHc--CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccce
Q 008172 338 GDLGV----------DI-P---LEQIPTVQEIIIHVCRQL--NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADA 401 (575)
Q Consensus 338 GDLg~----------e~-~---~e~v~~~Qk~Ii~~c~~~--gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~ 401 (575)
+-... .. + .+.-+...+.+-+...+. +.|+|....+. ...|+..++..|||+
T Consensus 247 t~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~------------s~eda~e~l~aGAd~ 314 (344)
T PRK05286 247 TTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGID------------SAEDAYEKIRAGASL 314 (344)
T ss_pred CccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCC------------CHHHHHHHHHcCCCH
Confidence 21110 01 1 122233444444444444 57999876554 346778888899999
Q ss_pred EEeccCc
Q 008172 402 LMLSGES 408 (575)
Q Consensus 402 vmLs~ET 408 (575)
||+..-.
T Consensus 315 V~v~~~~ 321 (344)
T PRK05286 315 VQIYSGL 321 (344)
T ss_pred HHHHHHH
Confidence 9997443
No 166
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=73.61 E-value=35 Score=35.10 Aligned_cols=112 Identities=22% Similarity=0.259 Sum_probs=63.6
Q ss_pred CCCEEEehhhHHhhhcCCCCCh-------hhH-----hhHHHHHHcccceEEeccC--cCCCC-CHHHHHHHHHHHHHHH
Q 008172 364 NKPVIVASQLLESMVEYPTPTR-------AEV-----ADVSEAVRQYADALMLSGE--SAIGP-FGQKAVSVLQMASSRM 428 (575)
Q Consensus 364 gKPvivaTq~LeSM~~~p~Ptr-------AEv-----~Dv~nav~~G~D~vmLs~E--Ta~G~-yPveaV~~m~~I~~~a 428 (575)
.||+|---+++ |.|.- .|+ .|......-|+|++|+.+. +..-+ -+-+++..|..|..+.
T Consensus 7 ~k~vIGvvHL~------PLPGsp~~~~~~~~vid~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v 80 (263)
T COG0434 7 KKPVIGVVHLL------PLPGSPYDAGSLEAVIDRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREV 80 (263)
T ss_pred CCceEEEEecC------CCCCCccccCCHHHHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHH
Confidence 35788655544 66632 243 4444466779999999764 22111 1257888899887655
Q ss_pred hhhhhhhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcCCcEEE-------EEcCChh---HHHHHhccCCCCc
Q 008172 429 ELWSREENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLGVDAIF-------VYTKHGH---MASLLSRNRPNPP 496 (575)
Q Consensus 429 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~AkaIV-------VfT~SG~---TAr~VSr~RP~~P 496 (575)
-... .+ +.-.+...-=+.+|..+|...+|+.|= .+|..|- -|..+.|||++.+
T Consensus 81 ~r~v-------~i--------PvGvNVLrNd~vaA~~IA~a~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~ 143 (263)
T COG0434 81 VREV-------SI--------PVGVNVLRNDAVAALAIAYAVGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLG 143 (263)
T ss_pred HHhc-------cc--------cceeeeeccccHHHHHHHHhcCCCEEEEEeeeceEecccceecchHHHHHHHHHhcc
Confidence 3211 01 101111222234567777888898875 3555554 5667777776554
No 167
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=72.91 E-value=7 Score=41.63 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=40.5
Q ss_pred ceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHH
Q 008172 91 TKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQL 140 (575)
Q Consensus 91 tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~ 140 (575)
..+.+.+|+.....+.++.++++|++++=+|++||..+...++++.+|+.
T Consensus 83 l~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~ 132 (325)
T cd00381 83 LLVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK 132 (325)
T ss_pred ceEEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 34456677755668899999999999999999999988777888888753
No 168
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=72.66 E-value=1.3e+02 Score=31.71 Aligned_cols=129 Identities=15% Similarity=0.234 Sum_probs=83.5
Q ss_pred HHHHHHHHcCCCEEEe--------------cCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEE
Q 008172 269 DDIEFGIAEGVDFIAM--------------SFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGI 333 (575)
Q Consensus 269 ~di~~al~~gvd~I~~--------------SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgI 333 (575)
+..+-|-+.|+-.|++ .-.+++++++++++.+ ++.||+|+---- +...+.+.+. +|.|
T Consensus 21 eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~V------~iPVig~~kigh-~~Ea~~L~~~GvDiI 93 (287)
T TIGR00343 21 EQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMDAV------SIPVMAKVRIGH-FVEAQILEALGVDYI 93 (287)
T ss_pred HHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHHhC------CCCEEEEeeccH-HHHHHHHHHcCCCEE
Confidence 3445566667766655 3456677777777654 477888774321 5555666666 8888
Q ss_pred EEeCCCCCCCCCCCChHHHHHHHHHHHHH-cCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCC
Q 008172 334 MVARGDLGVDIPLEQIPTVQEIIIHVCRQ-LNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGP 412 (575)
Q Consensus 334 mIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~-~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~ 412 (575)
| ..+..-+ -...+...+. .+.|+++-. +.+.+.-+++..|+|.|--++|--.|
T Consensus 94 -----D-eTe~lrP-----ade~~~~~K~~f~vpfmad~--------------~~l~EAlrai~~GadmI~Tt~e~gTg- 147 (287)
T TIGR00343 94 -----D-ESEVLTP-----ADWTFHIDKKKFKVPFVCGA--------------RDLGEALRRINEGAAMIRTKGEAGTG- 147 (287)
T ss_pred -----E-ccCCCCc-----HHHHHHHHHHHcCCCEEccC--------------CCHHHHHHHHHCCCCEEeccccCCCc-
Confidence 4 3333323 1333333443 488887522 23445577899999999999997777
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 008172 413 FGQKAVSVLQMASSRMEL 430 (575)
Q Consensus 413 yPveaV~~m~~I~~~aE~ 430 (575)
+-+|||+-|+.+-.+...
T Consensus 148 ~v~~av~hlr~~~~~~~~ 165 (287)
T TIGR00343 148 NIVEAVRHMRKINEEIRQ 165 (287)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 679999999998766654
No 169
>TIGR03586 PseI pseudaminic acid synthase.
Probab=72.60 E-value=73 Score=34.19 Aligned_cols=68 Identities=21% Similarity=0.316 Sum_probs=44.7
Q ss_pred CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHH-ccc-ceEEeccC
Q 008172 330 SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVR-QYA-DALMLSGE 407 (575)
Q Consensus 330 sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~-~G~-D~vmLs~E 407 (575)
+|.+=||-||+. +. .+++.+.+.||||++.|.| .|.+|+......+. .|. +-++|=..
T Consensus 111 v~~~KI~S~~~~------n~-----~LL~~va~~gkPvilstG~---------~t~~Ei~~Av~~i~~~g~~~i~LlhC~ 170 (327)
T TIGR03586 111 VPAYKIASFEIT------DL-----PLIRYVAKTGKPIIMSTGI---------ATLEEIQEAVEACREAGCKDLVLLKCT 170 (327)
T ss_pred CCEEEECCcccc------CH-----HHHHHHHhcCCcEEEECCC---------CCHHHHHHHHHHHHHCCCCcEEEEecC
Confidence 678888888872 22 3566677889999998865 47788888888776 577 44444433
Q ss_pred cCCCCCHHHHH
Q 008172 408 SAIGPFGQKAV 418 (575)
Q Consensus 408 Ta~G~yPveaV 418 (575)
+.. .+|.+.+
T Consensus 171 s~Y-P~~~~~~ 180 (327)
T TIGR03586 171 SSY-PAPLEDA 180 (327)
T ss_pred CCC-CCCcccC
Confidence 332 3444443
No 170
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=71.91 E-value=29 Score=35.60 Aligned_cols=99 Identities=20% Similarity=0.214 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCCEEEec------CcCChhhHHHHHHHHhccCCCCceEEeeecC---HHHHhcHHHHHhc-CCEEEEeC
Q 008172 268 WDDIEFGIAEGVDFIAMS------FVCDADSVRHLKKYVSGKSSRSIKVLAKIEN---LESLQKFEEIVEA-SDGIMVAR 337 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~S------fV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt---~~av~nldeI~~~-sDgImIaR 337 (575)
.+.+++.++.|+++|++. +--|.++=+++-+...+....++.||+-+=. .++++......+. +|++|+.+
T Consensus 21 ~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~p 100 (281)
T cd00408 21 RRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVP 100 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECC
Confidence 466788999999999764 2234455455444333322246888888843 3344444444444 89999976
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 338 GDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 338 GDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
-.... .+.+.+...-+.|++ +.+.|+++-
T Consensus 101 P~y~~-~~~~~~~~~~~~ia~---~~~~pi~iY 129 (281)
T cd00408 101 PYYNK-PSQEGIVAHFKAVAD---ASDLPVILY 129 (281)
T ss_pred CcCCC-CCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 65433 233444444455544 368899863
No 171
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=71.86 E-value=60 Score=33.19 Aligned_cols=133 Identities=13% Similarity=0.107 Sum_probs=75.6
Q ss_pred HHHHHHHHcCCCEEEecC-cCC---hh---hHHHHHHHHhccCCCCceEEeeec---------CHHHHhcHHHHHhc--C
Q 008172 269 DDIEFGIAEGVDFIAMSF-VCD---AD---SVRHLKKYVSGKSSRSIKVLAKIE---------NLESLQKFEEIVEA--S 330 (575)
Q Consensus 269 ~di~~al~~gvd~I~~Sf-V~s---a~---dv~~ir~~l~~~~~~~i~IIaKIE---------t~~av~nldeI~~~--s 330 (575)
..++.+++.|+|.|.+-. ..+ .+ ++.++++.+.+.| +.++...+ +.+.+...-++... +
T Consensus 94 ~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g---~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GA 170 (258)
T TIGR01949 94 TTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWG---VPLLAMMYPRGPHIDDRDPELVAHAARLGAELGA 170 (258)
T ss_pred eeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcC---CCEEEEEeccCcccccccHHHHHHHHHHHHHHCC
Confidence 457789999999876622 111 23 3444444444443 33444433 11112221122222 7
Q ss_pred CEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCC---hhh-HhhHHHHHHcccceEEecc
Q 008172 331 DGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPT---RAE-VADVSEAVRQYADALMLSG 406 (575)
Q Consensus 331 DgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~Pt---rAE-v~Dv~nav~~G~D~vmLs~ 406 (575)
|.|-.. ++. . ....+++ +.....||..+. -++ ..+ ...+..++..|++++....
T Consensus 171 Dyikt~-------~~~-~-~~~l~~~---~~~~~iPVva~G----------Gi~~~~~~~~~~~i~~~~~aGa~Gia~g~ 228 (258)
T TIGR01949 171 DIVKTP-------YTG-D-IDSFRDV---VKGCPAPVVVAG----------GPKTNSDREFLQMIKDAMEAGAAGVAVGR 228 (258)
T ss_pred CEEecc-------CCC-C-HHHHHHH---HHhCCCcEEEec----------CCCCCCHHHHHHHHHHHHHcCCcEEehhh
Confidence 888874 111 1 1222333 334578997643 233 222 4556677889999999998
Q ss_pred CcCCCCCHHHHHHHHHHHHH
Q 008172 407 ESAIGPFGQKAVSVLQMASS 426 (575)
Q Consensus 407 ETa~G~yPveaV~~m~~I~~ 426 (575)
.-..-..|.++++.+..+.+
T Consensus 229 ~i~~~~dp~~~~~~l~~~i~ 248 (258)
T TIGR01949 229 NIFQHDDPVGITKAVCKIVH 248 (258)
T ss_pred HhhcCCCHHHHHHHHHHHHh
Confidence 88888899999998888753
No 172
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=71.48 E-value=71 Score=32.60 Aligned_cols=121 Identities=17% Similarity=0.204 Sum_probs=69.5
Q ss_pred CccCHHHHHHHHHcCCCEEEec----------------CcCChhhHHHHHHHHhccCCCCceEEeeecCH----HHHhcH
Q 008172 264 SKKDWDDIEFGIAEGVDFIAMS----------------FVCDADSVRHLKKYVSGKSSRSIKVLAKIENL----ESLQKF 323 (575)
Q Consensus 264 sekD~~di~~al~~gvd~I~~S----------------fV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~----~av~nl 323 (575)
|..+...+..-+..++|+|=+. ..++++.+.++.+.+... .+.|.+||=-- +.++-.
T Consensus 78 ~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~---~~PVsvKiR~~~~~~~~~~~a 154 (231)
T TIGR00736 78 DLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL---NKPIFVKIRGNCIPLDELIDA 154 (231)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC---CCcEEEEeCCCCCcchHHHHH
Confidence 3344444444456678887765 345777777777767633 46899998421 222222
Q ss_pred HHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHc-C-CCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccc
Q 008172 324 EEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQL-N-KPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYAD 400 (575)
Q Consensus 324 deI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~-g-KPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D 400 (575)
..+.+. +|+|-|..+. +.-+.+.-+.++..+++ + .|+|. ++..-|.. |+...+..|+|
T Consensus 155 ~~l~~aGad~i~Vd~~~-------~g~~~a~~~~I~~i~~~~~~ipIIg---------NGgI~s~e---da~e~l~~GAd 215 (231)
T TIGR00736 155 LNLVDDGFDGIHVDAMY-------PGKPYADMDLLKILSEEFNDKIIIG---------NNSIDDIE---SAKEMLKAGAD 215 (231)
T ss_pred HHHHHcCCCEEEEeeCC-------CCCchhhHHHHHHHHHhcCCCcEEE---------ECCcCCHH---HHHHHHHhCCC
Confidence 223333 8999995222 11122444555555554 3 89886 34444554 55555667999
Q ss_pred eEEecc
Q 008172 401 ALMLSG 406 (575)
Q Consensus 401 ~vmLs~ 406 (575)
+||+..
T Consensus 216 ~VmvgR 221 (231)
T TIGR00736 216 FVSVAR 221 (231)
T ss_pred eEEEcH
Confidence 999863
No 173
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=71.48 E-value=16 Score=36.55 Aligned_cols=101 Identities=17% Similarity=0.208 Sum_probs=64.1
Q ss_pred HHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceE-EeeecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCCCCCCh
Q 008172 272 EFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKV-LAKIENLESLQKFEEIVEA-SDGIMVARGDLGVDIPLEQI 349 (575)
Q Consensus 272 ~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~I-IaKIEt~~av~nldeI~~~-sDgImIaRGDLg~e~~~e~v 349 (575)
+..++.|+..|=+.| +++.-.+.++++.++. .++.| ..-|=+.+ ..+..++. ++.| |.|+
T Consensus 27 ~al~~~Gi~~iEit~-~t~~a~~~i~~l~~~~--~~~~vGAGTVl~~~---~a~~a~~aGA~Fi-vsP~----------- 88 (204)
T TIGR01182 27 KALIEGGLRVLEVTL-RTPVALDAIRLLRKEV--PDALIGAGTVLNPE---QLRQAVDAGAQFI-VSPG----------- 88 (204)
T ss_pred HHHHHcCCCEEEEeC-CCccHHHHHHHHHHHC--CCCEEEEEeCCCHH---HHHHHHHcCCCEE-ECCC-----------
Confidence 455678899988888 6776666666654433 23322 22333333 34444444 5555 4322
Q ss_pred HHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEecc
Q 008172 350 PTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSG 406 (575)
Q Consensus 350 ~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ 406 (575)
.-..+++.|+++|.|++ |--.=-+++..|...|+|.+=|=-
T Consensus 89 --~~~~v~~~~~~~~i~~i--------------PG~~TptEi~~A~~~Ga~~vKlFP 129 (204)
T TIGR01182 89 --LTPELAKHAQDHGIPII--------------PGVATPSEIMLALELGITALKLFP 129 (204)
T ss_pred --CCHHHHHHHHHcCCcEE--------------CCCCCHHHHHHHHHCCCCEEEECC
Confidence 13589999999999998 333334667899999999998854
No 174
>PRK08227 autoinducer 2 aldolase; Validated
Probab=71.43 E-value=42 Score=34.91 Aligned_cols=143 Identities=14% Similarity=0.162 Sum_probs=84.2
Q ss_pred HHHHHHHHcCCCEEEec-CcCChhhHHHHHHH---HhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCC
Q 008172 269 DDIEFGIAEGVDFIAMS-FVCDADSVRHLKKY---VSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDI 344 (575)
Q Consensus 269 ~di~~al~~gvd~I~~S-fV~sa~dv~~ir~~---l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~ 344 (575)
-+++.|+++|+|.|.+. |+-+..+-+.++++ ..+.....+.+++....-+.+.|=.++++.+- =+| .+||.++
T Consensus 98 ~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aa--Ria-aELGADi 174 (264)
T PRK08227 98 VDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLAT--RIA-AEMGAQI 174 (264)
T ss_pred ecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHH--HHH-HHHcCCE
Confidence 44677999999998774 34454444444332 22221122456653322222333222322210 000 1233222
Q ss_pred ---CCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCC-CCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHH
Q 008172 345 ---PLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYP-TPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSV 420 (575)
Q Consensus 345 ---~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p-~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~ 420 (575)
+++. ...+++++.| ..||++|.- | .+++.-+..+++++..|+-++...---..=..|...++.
T Consensus 175 VK~~y~~--~~f~~vv~a~---~vPVviaGG--------~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~a 241 (264)
T PRK08227 175 IKTYYVE--EGFERITAGC---PVPIVIAGG--------KKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKA 241 (264)
T ss_pred EecCCCH--HHHHHHHHcC---CCcEEEeCC--------CCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHH
Confidence 2332 4566777755 579999853 2 234555788999999999999998888888899999999
Q ss_pred HHHHHHH
Q 008172 421 LQMASSR 427 (575)
Q Consensus 421 m~~I~~~ 427 (575)
++.|+.+
T Consensus 242 l~~IVh~ 248 (264)
T PRK08227 242 VHAVVHE 248 (264)
T ss_pred HHHHHhC
Confidence 9999754
No 175
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=71.21 E-value=74 Score=35.62 Aligned_cols=124 Identities=16% Similarity=0.206 Sum_probs=72.3
Q ss_pred CHHHHHHHHHcCCCEEEecCc-C-ChhhHHHHHHH-H--hccC--CCCceEEeeecCHHHHhc---------HHHHHhc-
Q 008172 267 DWDDIEFGIAEGVDFIAMSFV-C-DADSVRHLKKY-V--SGKS--SRSIKVLAKIENLESLQK---------FEEIVEA- 329 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~SfV-~-sa~dv~~ir~~-l--~~~~--~~~i~IIaKIEt~~av~n---------ldeI~~~- 329 (575)
+.+.++..++.|+..|..|.- . ++..+ ..|.. + ...+ .....||+|+-+++-... ++.+.+.
T Consensus 89 e~~~v~l~l~~~V~~veasa~~~~~p~~v-~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G 167 (444)
T TIGR02814 89 EWGLVDLLLRHGVRIVEASAFMQLTPALV-RYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAEG 167 (444)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCcchh-hhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHcC
Confidence 456678889999999888732 2 33222 22221 1 0000 012489999987776544 1222221
Q ss_pred ---------------CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHH------c--CCCEEEehhhHHhhhcCCCCChh
Q 008172 330 ---------------SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQ------L--NKPVIVASQLLESMVEYPTPTRA 386 (575)
Q Consensus 330 ---------------sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~------~--gKPvivaTq~LeSM~~~p~PtrA 386 (575)
+|.|.+. .|=|-+.+.-.....-..|.+.+.+ + ..|||.|.-+-
T Consensus 168 ~it~eEA~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~------------ 234 (444)
T TIGR02814 168 RITREEAELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIG------------ 234 (444)
T ss_pred CCCHHHHHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCC------------
Confidence 6889887 8888777643333333344332222 2 45699887655
Q ss_pred hHhhHHHHHHcccceEEe
Q 008172 387 EVADVSEAVRQYADALML 404 (575)
Q Consensus 387 Ev~Dv~nav~~G~D~vmL 404 (575)
.-.+++.|...|+|+|.+
T Consensus 235 t~~~vaAAlaLGAdgV~~ 252 (444)
T TIGR02814 235 TPEAAAAAFMLGADFIVT 252 (444)
T ss_pred CHHHHHHHHHcCCcEEEe
Confidence 234678899999999987
No 176
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=71.01 E-value=39 Score=34.48 Aligned_cols=113 Identities=21% Similarity=0.227 Sum_probs=72.7
Q ss_pred HHHHHHHHcCCCEEEe---------------cCcCChhhHHHHHHHHhccCC-CCceEEeeecCH--------HHHhcHH
Q 008172 269 DDIEFGIAEGVDFIAM---------------SFVCDADSVRHLKKYVSGKSS-RSIKVLAKIENL--------ESLQKFE 324 (575)
Q Consensus 269 ~di~~al~~gvd~I~~---------------SfV~sa~dv~~ir~~l~~~~~-~~i~IIaKIEt~--------~av~nld 324 (575)
+.++...+.|+++|.+ ..+...+.+..++.....+.. .+..|+|..|.. ++++...
T Consensus 88 ~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ 167 (243)
T cd00377 88 RTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAK 167 (243)
T ss_pred HHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHH
Confidence 4456677899999999 556666667777776665543 379999996553 4555566
Q ss_pred HHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCC-CChhhHhhHHHHHHcccceE
Q 008172 325 EIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPT-PTRAEVADVSEAVRQYADAL 402 (575)
Q Consensus 325 eI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~-PtrAEv~Dv~nav~~G~D~v 402 (575)
.-.+. +|++|+-. +.. .+.+-+.+++...|+.+- +..++. ++..|+. ..|+.-+
T Consensus 168 ay~~AGAD~v~v~~--------~~~----~~~~~~~~~~~~~Pl~~~------~~~~~~~~~~~~l~------~lG~~~v 223 (243)
T cd00377 168 AYAEAGADGIFVEG--------LKD----PEEIRAFAEAPDVPLNVN------MTPGGNLLTVAELA------ELGVRRV 223 (243)
T ss_pred HHHHcCCCEEEeCC--------CCC----HHHHHHHHhcCCCCEEEE------ecCCCCCCCHHHHH------HCCCeEE
Confidence 66666 89999941 112 255555666788999873 112221 4555444 4688877
Q ss_pred Eec
Q 008172 403 MLS 405 (575)
Q Consensus 403 mLs 405 (575)
...
T Consensus 224 ~~~ 226 (243)
T cd00377 224 SYG 226 (243)
T ss_pred EEC
Confidence 664
No 177
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=70.85 E-value=28 Score=36.12 Aligned_cols=98 Identities=15% Similarity=0.153 Sum_probs=57.4
Q ss_pred HHHHHHHHHc-CCCEEEecC------cCChhhHHHH-HHHHhccCCCCceEEeeec---CHHHHhcHHHHHhc-CCEEEE
Q 008172 268 WDDIEFGIAE-GVDFIAMSF------VCDADSVRHL-KKYVSGKSSRSIKVLAKIE---NLESLQKFEEIVEA-SDGIMV 335 (575)
Q Consensus 268 ~~di~~al~~-gvd~I~~Sf------V~sa~dv~~i-r~~l~~~~~~~i~IIaKIE---t~~av~nldeI~~~-sDgImI 335 (575)
.+.+++.++. |+++|++.= -=|.++=.++ +..++..+ .++.||+-+- +.++++......+. +|++|+
T Consensus 24 ~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~-~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~ 102 (288)
T cd00954 24 RAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAK-GKVTLIAHVGSLNLKESQELAKHAEELGYDAISA 102 (288)
T ss_pred HHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-CCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4566788999 999987642 2233333333 33343333 4688999884 45666666665555 899998
Q ss_pred eCCCCCCCCCCCChHHHHHHHHHHHHHc-CCCEEEe
Q 008172 336 ARGDLGVDIPLEQIPTVQEIIIHVCRQL-NKPVIVA 370 (575)
Q Consensus 336 aRGDLg~e~~~e~v~~~Qk~Ii~~c~~~-gKPviva 370 (575)
.+-...- ...+.+...-+.| |.+. +.|+++.
T Consensus 103 ~~P~y~~-~~~~~i~~~~~~v---~~a~~~lpi~iY 134 (288)
T cd00954 103 ITPFYYK-FSFEEIKDYYREI---IAAAASLPMIIY 134 (288)
T ss_pred eCCCCCC-CCHHHHHHHHHHH---HHhcCCCCEEEE
Confidence 6544311 2223344444444 4455 7888874
No 178
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=70.83 E-value=71 Score=33.46 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=85.9
Q ss_pred CCCccCHHHHH-HHHHcCCCEEEe-cCcCC-----hhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEE
Q 008172 262 TLSKKDWDDIE-FGIAEGVDFIAM-SFVCD-----ADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGI 333 (575)
Q Consensus 262 ~lsekD~~di~-~al~~gvd~I~~-SfV~s-----a~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgI 333 (575)
.+|..++..|. ...+.|++.|=+ ||+.. ..|..++-+.+... ....+.+-.-+.++++. -++. .|.+
T Consensus 22 ~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~--~~~~~~~l~~~~~~ie~---A~~~g~~~v 96 (287)
T PRK05692 22 FIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRR--PGVTYAALTPNLKGLEA---ALAAGADEV 96 (287)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhcc--CCCeEEEEecCHHHHHH---HHHcCCCEE
Confidence 35556665554 445799999976 45532 12223333333322 23444443335555533 2333 5655
Q ss_pred EEe--CCCC----CCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCC---ChhhHhhHHH-HHHcccceEE
Q 008172 334 MVA--RGDL----GVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTP---TRAEVADVSE-AVRQYADALM 403 (575)
Q Consensus 334 mIa--RGDL----g~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~P---trAEv~Dv~n-av~~G~D~vm 403 (575)
.+. -.|+ -.....++.....+.+++.++++|..+...-.+ ...+|.- +.+.+.+++. +...|+|.|.
T Consensus 97 ~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~ 173 (287)
T PRK05692 97 AVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSC---VLGCPYEGEVPPEAVADVAERLFALGCYEIS 173 (287)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEE---EecCCCCCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 543 1111 011122344455678999999999987532110 0112322 3344555544 6678999999
Q ss_pred eccCcCCCCCHHHHHHHHHHHHH
Q 008172 404 LSGESAIGPFGQKAVSVLQMASS 426 (575)
Q Consensus 404 Ls~ETa~G~yPveaV~~m~~I~~ 426 (575)
|. +|.=--.|.+.-++++.+.+
T Consensus 174 l~-DT~G~~~P~~v~~lv~~l~~ 195 (287)
T PRK05692 174 LG-DTIGVGTPGQVRAVLEAVLA 195 (287)
T ss_pred ec-cccCccCHHHHHHHHHHHHH
Confidence 98 78777889998888777753
No 179
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=70.75 E-value=9.9 Score=38.17 Aligned_cols=38 Identities=8% Similarity=0.121 Sum_probs=28.8
Q ss_pred HHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEe
Q 008172 353 QEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALML 404 (575)
Q Consensus 353 Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmL 404 (575)
-..+++.|++++.|.+=- .-|. +++..|...|+|.+=|
T Consensus 97 ~~~vi~~a~~~~i~~iPG-----------~~Tp---tEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 97 TPPLLKAAQEGPIPLIPG-----------VSTP---SELMLGMELGLRTFKF 134 (212)
T ss_pred CHHHHHHHHHcCCCEeCC-----------CCCH---HHHHHHHHCCCCEEEE
Confidence 348899999999999810 1233 3468899999999998
No 180
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=70.73 E-value=52 Score=33.53 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCCEEEecCcC----------ChhhHHHHHHHHhccC
Q 008172 268 WDDIEFGIAEGVDFIAMSFVC----------DADSVRHLKKYVSGKS 304 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV~----------sa~dv~~ir~~l~~~~ 304 (575)
.+.++.+-+.|+|+|=+++-. +++++.++++.+++.|
T Consensus 24 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 70 (283)
T PRK13209 24 LEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETG 70 (283)
T ss_pred HHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcC
Confidence 356778889999999887422 6788999999998776
No 181
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=70.54 E-value=1e+02 Score=30.87 Aligned_cols=131 Identities=19% Similarity=0.235 Sum_probs=69.0
Q ss_pred CHHHHHHHHHcCCCEEEecC--cCChhhHHHHHHHHhccCCCCce--EEeee---------------c-CHHHHhcHHHH
Q 008172 267 DWDDIEFGIAEGVDFIAMSF--VCDADSVRHLKKYVSGKSSRSIK--VLAKI---------------E-NLESLQKFEEI 326 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~Sf--V~sa~dv~~ir~~l~~~~~~~i~--IIaKI---------------E-t~~av~nldeI 326 (575)
+.++++..++.|+|.|++.. .++++.+.++.+.+.. ..+. +=+|+ + ..+.++-..+.
T Consensus 82 s~~d~~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~~~---~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l 158 (243)
T cd04731 82 SLEDARRLLRAGADKVSINSAAVENPELIREIAKRFGS---QCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEV 158 (243)
T ss_pred CHHHHHHHHHcCCceEEECchhhhChHHHHHHHHHcCC---CCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHH
Confidence 46777777888999887764 4666677776655421 1111 11121 1 11222223333
Q ss_pred Hhc-CCEEEEe-CCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHH-cccceEE
Q 008172 327 VEA-SDGIMVA-RGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVR-QYADALM 403 (575)
Q Consensus 327 ~~~-sDgImIa-RGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~-~G~D~vm 403 (575)
.+. +|.|.+. +..=|..-+ .... .+-+.+...+.|++.+.-+- +.+ |+..+.. .|+|++|
T Consensus 159 ~~~G~d~i~v~~i~~~g~~~g-~~~~----~i~~i~~~~~~pvia~GGi~---------~~~---di~~~l~~~g~dgv~ 221 (243)
T cd04731 159 EELGAGEILLTSMDRDGTKKG-YDLE----LIRAVSSAVNIPVIASGGAG---------KPE---HFVEAFEEGGADAAL 221 (243)
T ss_pred HHCCCCEEEEeccCCCCCCCC-CCHH----HHHHHHhhCCCCEEEeCCCC---------CHH---HHHHHHHhCCCCEEE
Confidence 333 7988883 111111111 1221 12222344689999865433 333 4455555 4999999
Q ss_pred eccCcCCCCCHHHH
Q 008172 404 LSGESAIGPFGQKA 417 (575)
Q Consensus 404 Ls~ETa~G~yPvea 417 (575)
++.---.|.+..+.
T Consensus 222 vg~al~~~~~~~~~ 235 (243)
T cd04731 222 AASIFHFGEYTIAE 235 (243)
T ss_pred EeHHHHcCCCCHHH
Confidence 98666667776544
No 182
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=69.88 E-value=1.2e+02 Score=31.81 Aligned_cols=151 Identities=20% Similarity=0.195 Sum_probs=82.0
Q ss_pred HHHhcHHHHHhc-----CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhh--Hhh
Q 008172 318 ESLQKFEEIVEA-----SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAE--VAD 390 (575)
Q Consensus 318 ~av~nldeI~~~-----sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAE--v~D 390 (575)
+++.|++++++. +|+++.-+|=+..-- .-..+.+|.++ .|.++.+-..+++-+ +..
T Consensus 40 ~gl~d~e~~v~~v~~~g~dav~~~~G~~~~~~--------------~~y~~dvpliv---kl~~~t~l~~~~~~~~~~~~ 102 (265)
T COG1830 40 EGLEDPENIVAKVAEAGADAVAMTPGIARSVH--------------RGYAHDVPLIV---KLNGSTSLSPDPNDQVLVAT 102 (265)
T ss_pred ccccCHHHHHHHHHhcCCCEEEecHhHHhhcC--------------ccccCCcCEEE---EeccccccCCCcccceeeee
Confidence 466777766655 577777655332211 11234678887 566664422222333 467
Q ss_pred HHHHHHcccceEEe----ccCcCCCCCHHHHHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCC-C---CCchhhHHHHH
Q 008172 391 VSEAVRQYADALML----SGESAIGPFGQKAVSVLQMASSRMELWSREENRQSALCGQRQLGES-L---HDRIAEQICNC 462 (575)
Q Consensus 391 v~nav~~G~D~vmL----s~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~ia~~ 462 (575)
|-.|+..|+|++-. -.|+- -+.++.+.++...+.+|=--. + -+...+.+ . .....+.++ .
T Consensus 103 ve~ai~lgadAV~~~Vy~Gse~e-----~~~i~~~~~v~~~a~~~Gmp~-----v-~~~YpRg~~~~~~~~~d~~~v~-~ 170 (265)
T COG1830 103 VEDAIRLGADAVGATVYVGSETE-----REMIENISQVVEDAHELGMPL-----V-AWAYPRGPAIKDEYHRDADLVG-Y 170 (265)
T ss_pred HHHHHhCCCcEEEEEEecCCcch-----HHHHHHHHHHHHHHHHcCCce-----E-EEEeccCCcccccccccHHHHH-H
Confidence 77799999999754 34443 567777777777776541100 0 00000011 1 122334444 4
Q ss_pred HHHHHHhcCCcEEEEEcCCh--hHHHHHhccCCCCcEEE
Q 008172 463 AVDMANNLGVDAIFVYTKHG--HMASLLSRNRPNPPIFA 499 (575)
Q Consensus 463 av~~a~~~~AkaIVVfT~SG--~TAr~VSr~RP~~PIiA 499 (575)
|.+++.+++|+ ||=--.+| -+-+++-++.| +||+.
T Consensus 171 aaRlaaelGAD-IiK~~ytg~~e~F~~vv~~~~-vpVvi 207 (265)
T COG1830 171 AARLAAELGAD-IIKTKYTGDPESFRRVVAACG-VPVVI 207 (265)
T ss_pred HHHHHHHhcCC-eEeecCCCChHHHHHHHHhCC-CCEEE
Confidence 55788999999 44444444 55566666666 55543
No 183
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=69.79 E-value=52 Score=33.03 Aligned_cols=152 Identities=16% Similarity=0.200 Sum_probs=92.8
Q ss_pred CCCCCcc-C-HHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecC-----HHH-----HhcHHHHH
Q 008172 260 LPTLSKK-D-WDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIEN-----LES-----LQKFEEIV 327 (575)
Q Consensus 260 lp~lsek-D-~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt-----~~a-----v~nldeI~ 327 (575)
.|.++.. | .+.+..+++.+++.|+++ +.-+...++.+...+ ..+.++..... ..- +...++.+
T Consensus 12 ~~~~~~~~~~~~~~~~a~~~~~~av~v~----p~~~~~~~~~~~~~~-~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~ 86 (236)
T PF01791_consen 12 HGPMTGEEDIKKLCREAIEYGFDAVCVT----PGYVKPAAELLAGSG-VKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAI 86 (236)
T ss_dssp HTTHHHHHHHHHHHHHHHHHTSSEEEEE----GGGHHHHHHHSTTST-SEEEEEESTTTSSSTHHHHTCEEEHHHHHHHH
T ss_pred CCCCCchhhHHHHHHHHHHhCCCEEEEC----HHHHHHHHHHhhccc-cccceEEEeCCCCCccccccccchHHHHHHHH
Confidence 3445554 5 466678999999999886 446666666665432 35667777653 222 45566666
Q ss_pred hc-CCEEEEe--CCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhh---------HhhHHH-H
Q 008172 328 EA-SDGIMVA--RGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAE---------VADVSE-A 394 (575)
Q Consensus 328 ~~-sDgImIa--RGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAE---------v~Dv~n-a 394 (575)
+. +|+|-+- .|-++-+- ...+..--+++++.|+.+|.|+|+= +.|+..| +...+. +
T Consensus 87 ~~GAd~vd~vi~~~~~~~~~-~~~~~~~i~~v~~~~~~~gl~vIlE----------~~l~~~~~~~~~~~~~I~~a~ria 155 (236)
T PF01791_consen 87 RLGADEVDVVINYGALGSGN-EDEVIEEIAAVVEECHKYGLKVILE----------PYLRGEEVADEKKPDLIARAARIA 155 (236)
T ss_dssp HTT-SEEEEEEEHHHHHTTH-HHHHHHHHHHHHHHHHTSEEEEEEE----------ECECHHHBSSTTHHHHHHHHHHHH
T ss_pred HcCCceeeeecccccccccc-HHHHHHHHHHHHHHHhcCCcEEEEE----------EecCchhhcccccHHHHHHHHHHH
Confidence 66 7776552 11111110 2344455568899999999999973 4556666 333333 6
Q ss_pred HHcccceEEeccCcCCCCCHHHHHHHHHHHHHHH
Q 008172 395 VRQYADALMLSGESAIGPFGQKAVSVLQMASSRM 428 (575)
Q Consensus 395 v~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~a 428 (575)
...|+|.+=.+-=.. ...-.+.++.|++++..+
T Consensus 156 ~e~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~ 188 (236)
T PF01791_consen 156 AELGADFVKTSTGKP-VGATPEDVELMRKAVEAA 188 (236)
T ss_dssp HHTT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTH
T ss_pred HHhCCCEEEecCCcc-ccccHHHHHHHHHHHHhc
Confidence 789999998863333 455667888888886544
No 184
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=69.67 E-value=1.4e+02 Score=31.78 Aligned_cols=140 Identities=14% Similarity=0.179 Sum_probs=77.7
Q ss_pred HHHHHcCCCEEEecCc--CC-h--------hhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-----CCEEEE
Q 008172 272 EFGIAEGVDFIAMSFV--CD-A--------DSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-----SDGIMV 335 (575)
Q Consensus 272 ~~al~~gvd~I~~SfV--~s-a--------~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-----sDgImI 335 (575)
+.+-+.|+|+|-+.+= .. + +.+.++-+.+.+. -++.|++|+- + .+.++.++++. +|||.+
T Consensus 119 ~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~--~~iPv~vKl~-p-~~~~~~~~a~~l~~~Gadgi~~ 194 (325)
T cd04739 119 RQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA--VTIPVAVKLS-P-FFSALAHMAKQLDAAGADGLVL 194 (325)
T ss_pred HHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc--cCCCEEEEcC-C-CccCHHHHHHHHHHcCCCeEEE
Confidence 4445678999876542 21 1 1223333333322 2478999984 2 23456666554 788876
Q ss_pred eCCCCCCCC--------------CCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccce
Q 008172 336 ARGDLGVDI--------------PLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADA 401 (575)
Q Consensus 336 aRGDLg~e~--------------~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~ 401 (575)
.-.=.+..+ +....+...+.+-+.+.....|+|...-+. -..|+..++..|||+
T Consensus 195 ~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~------------s~~Da~e~l~aGA~~ 262 (325)
T cd04739 195 FNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVH------------DAEDVVKYLLAGADV 262 (325)
T ss_pred EcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCC------------CHHHHHHHHHcCCCe
Confidence 321111111 112234444555455555689988765544 346789999999999
Q ss_pred EEeccCcCC-CCCHHHHHHHHHHHHHHHhhhhh
Q 008172 402 LMLSGESAI-GPFGQKAVSVLQMASSRMELWSR 433 (575)
Q Consensus 402 vmLs~ETa~-G~yPveaV~~m~~I~~~aE~~~~ 433 (575)
|++...--. | | ....+|.++-+.|+.
T Consensus 263 Vqv~ta~~~~g--p----~~~~~i~~~L~~~l~ 289 (325)
T cd04739 263 VMTTSALLRHG--P----DYIGTLLAGLEAWME 289 (325)
T ss_pred eEEehhhhhcC--c----hHHHHHHHHHHHHHH
Confidence 999833222 2 3 244556666665543
No 185
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=69.33 E-value=32 Score=37.23 Aligned_cols=153 Identities=15% Similarity=0.155 Sum_probs=88.4
Q ss_pred CCccCHHH-HHHHHHcCCCEEEe-cCcCCh------hhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEE
Q 008172 263 LSKKDWDD-IEFGIAEGVDFIAM-SFVCDA------DSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGI 333 (575)
Q Consensus 263 lsekD~~d-i~~al~~gvd~I~~-SfV~sa------~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgI 333 (575)
+|.+++.. ++...+.|++.|=+ ||| ++ .|..++.+.+.......+..++ =+.++++. .++. .|.|
T Consensus 65 ~s~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~vPqmad~~ev~~~i~~~~~~~~~~l~--~n~~die~---A~~~g~~~v 138 (347)
T PLN02746 65 VPTSVKVELIQRLVSSGLPVVEATSFV-SPKWVPQLADAKDVMAAVRNLEGARFPVLT--PNLKGFEA---AIAAGAKEV 138 (347)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCc-CcccccccccHHHHHHHHHhccCCceeEEc--CCHHHHHH---HHHcCcCEE
Confidence 44455544 44556799999965 566 44 2434443334332112222333 25544444 3344 6665
Q ss_pred EEe--CCCCC----CCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhh---HhhHHH-HHHcccceEE
Q 008172 334 MVA--RGDLG----VDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAE---VADVSE-AVRQYADALM 403 (575)
Q Consensus 334 mIa--RGDLg----~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAE---v~Dv~n-av~~G~D~vm 403 (575)
-+. -.|+= .....+++....+++++.++++|..|.+. +.....+|.-+|++ +.+++. ++..|+|.|.
T Consensus 139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~---is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~ 215 (347)
T PLN02746 139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY---VSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEIS 215 (347)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE---EEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 543 11211 11234666666779999999999988521 10112345555554 444444 7788999999
Q ss_pred eccCcCCCCCHHHHHHHHHHHH
Q 008172 404 LSGESAIGPFGQKAVSVLQMAS 425 (575)
Q Consensus 404 Ls~ETa~G~yPveaV~~m~~I~ 425 (575)
|. +|.=--.|.+..++++.+.
T Consensus 216 l~-DT~G~a~P~~v~~lv~~l~ 236 (347)
T PLN02746 216 LG-DTIGVGTPGTVVPMLEAVM 236 (347)
T ss_pred ec-CCcCCcCHHHHHHHHHHHH
Confidence 98 7887788999988888774
No 186
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=68.79 E-value=98 Score=35.06 Aligned_cols=154 Identities=12% Similarity=0.165 Sum_probs=95.0
Q ss_pred CCCccCHHHHHHHH-HcCCCEEEecC-cCChhhHHHHHHHHhccCCCCceEEeeec-CHHHHhcHHHHHhc-----CCEE
Q 008172 262 TLSKKDWDDIEFGI-AEGVDFIAMSF-VCDADSVRHLKKYVSGKSSRSIKVLAKIE-NLESLQKFEEIVEA-----SDGI 333 (575)
Q Consensus 262 ~lsekD~~di~~al-~~gvd~I~~Sf-V~sa~dv~~ir~~l~~~~~~~i~IIaKIE-t~~av~nldeI~~~-----sDgI 333 (575)
.+|..|+..|-..+ +.|+|.|=+.| +.+..|.+.++.+.... ....+.+-.- +.+.+ |.-++. .+.|
T Consensus 19 ~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~~--~~~~i~al~r~~~~di---d~a~~al~~~~~~~v 93 (494)
T TIGR00973 19 SLTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIARTV--KNPRVCGLARCVEKDI---DAAAEALKPAEKFRI 93 (494)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHhC--CCCEEEEEcCCCHHhH---HHHHHhccccCCCEE
Confidence 46777776665554 68999998765 56788888887765432 3344555443 23333 333332 2434
Q ss_pred EE--eCCCCCCC----CCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHcccceEEecc
Q 008172 334 MV--ARGDLGVD----IPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQYADALMLSG 406 (575)
Q Consensus 334 mI--aRGDLg~e----~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~G~D~vmLs~ 406 (575)
-+ .-.|+-++ ...+++.....+.++.|+++|.-|.+..+ ...+-+...+.+++. +...|+|.+.|.
T Consensus 94 ~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~E------d~~r~d~~~l~~~~~~~~~~Ga~~i~l~- 166 (494)
T TIGR00973 94 HTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCE------DAGRTEIPFLARIVEAAINAGATTINIP- 166 (494)
T ss_pred EEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcC------CCCCCCHHHHHHHHHHHHHcCCCEEEeC-
Confidence 33 22222211 22355556667889999999998777432 112223334555555 456799999998
Q ss_pred CcCCCCCHHHHHHHHHHHHHH
Q 008172 407 ESAIGPFGQKAVSVLQMASSR 427 (575)
Q Consensus 407 ETa~G~yPveaV~~m~~I~~~ 427 (575)
+|.=+..|-+.-+.++.+.+.
T Consensus 167 DTvG~~~P~~~~~~i~~l~~~ 187 (494)
T TIGR00973 167 DTVGYALPAEYGNLIKGLREN 187 (494)
T ss_pred CCCCCCCHHHHHHHHHHHHHh
Confidence 899999999888877777543
No 187
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=68.63 E-value=33 Score=35.98 Aligned_cols=98 Identities=19% Similarity=0.306 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCCEEEec------CcCChhhHHHH-HHHHhccCCCCceEEeeec--CHHHHhcHHHHHhc-CCEEEEeC
Q 008172 268 WDDIEFGIAEGVDFIAMS------FVCDADSVRHL-KKYVSGKSSRSIKVLAKIE--NLESLQKFEEIVEA-SDGIMVAR 337 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~S------fV~sa~dv~~i-r~~l~~~~~~~i~IIaKIE--t~~av~nldeI~~~-sDgImIaR 337 (575)
.+.++|.++.|+|+|++. +--|.++=.++ +...+..+ .++.+|+-+- +.++++......+. +|++|+.+
T Consensus 31 ~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~-~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~p 109 (303)
T PRK03620 31 REHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTA-GRVPVIAGAGGGTAQAIEYAQAAERAGADGILLLP 109 (303)
T ss_pred HHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-CCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECC
Confidence 355678999999999773 22344444444 33444443 4577887773 33444444444444 89999977
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 338 GDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 338 GDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
-... ....+.+....+.+ |.+.+.|+++-
T Consensus 110 P~y~-~~~~~~i~~~f~~v---a~~~~lpi~lY 138 (303)
T PRK03620 110 PYLT-EAPQEGLAAHVEAV---CKSTDLGVIVY 138 (303)
T ss_pred CCCC-CCCHHHHHHHHHHH---HHhCCCCEEEE
Confidence 6542 11223344444444 55568998874
No 188
>PRK14057 epimerase; Provisional
Probab=68.33 E-value=1.1e+02 Score=31.84 Aligned_cols=138 Identities=12% Similarity=0.129 Sum_probs=83.0
Q ss_pred HHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCC--------CceEEeeecCHHHHhcHHHHHhcCCEEEEeCCC
Q 008172 268 WDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSR--------SIKVLAKIENLESLQKFEEIVEASDGIMVARGD 339 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~--------~i~IIaKIEt~~av~nldeI~~~sDgImIaRGD 339 (575)
...++.-.+.|+|+|.+- ++...++.+.-+.+++.|.+ ...+.-+-+| -++.++.++...|.|+|
T Consensus 88 ~~~i~~~~~aGad~It~H-~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~T--p~e~i~~~l~~vD~VLv---- 160 (254)
T PRK14057 88 WTAAQACVKAGAHCITLQ-AEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPAT--PLDVIIPILSDVEVIQL---- 160 (254)
T ss_pred HHHHHHHHHhCCCEEEEe-eccccCHHHHHHHHHHcCCCcccccccceeEEEECCCC--CHHHHHHHHHhCCEEEE----
Confidence 345666678999998664 56556777777777776632 3677778787 57889999999999998
Q ss_pred CCCCCCC---CChHHHHHHHHHHHH---HcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCC--C
Q 008172 340 LGVDIPL---EQIPTVQEIIIHVCR---QLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAI--G 411 (575)
Q Consensus 340 Lg~e~~~---e~v~~~Qk~Ii~~c~---~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~--G 411 (575)
++++-|. .-.+..-++|.+..+ ++|-.+.+. ++- .=+. .-+...+..|+|.+.+. +++ .
T Consensus 161 MtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~Ie-------VDG-GI~~---~ti~~l~~aGad~~V~G--SalF~~ 227 (254)
T PRK14057 161 LAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIV-------IDG-SLTQ---DQLPSLIAQGIDRVVSG--SALFRD 227 (254)
T ss_pred EEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEE-------EEC-CCCH---HHHHHHHHCCCCEEEEC--hHhhCC
Confidence 3444443 334444444443222 334332221 011 1111 12345677999988875 343 2
Q ss_pred CCHHHHHHHHHHHH
Q 008172 412 PFGQKAVSVLQMAS 425 (575)
Q Consensus 412 ~yPveaV~~m~~I~ 425 (575)
..+.++++.|+.+.
T Consensus 228 ~d~~~~i~~l~~~~ 241 (254)
T PRK14057 228 DRLVENTRSWRAMF 241 (254)
T ss_pred CCHHHHHHHHHHHH
Confidence 35677777776553
No 189
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=68.20 E-value=87 Score=33.81 Aligned_cols=94 Identities=24% Similarity=0.264 Sum_probs=56.1
Q ss_pred CChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc----CCEEEEeCCCCCCCCCC-CChHHHHHHHHHHHHH
Q 008172 288 CDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA----SDGIMVARGDLGVDIPL-EQIPTVQEIIIHVCRQ 362 (575)
Q Consensus 288 ~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~----sDgImIaRGDLg~e~~~-e~v~~~Qk~Ii~~c~~ 362 (575)
.+.++++++++.. ...||.| ++.+.++.... +|+|.|. +--|..+.. .....+...+.+...+
T Consensus 200 ~~~~~i~~l~~~~------~~PvivK-----gv~~~~dA~~a~~~G~d~I~vs-nhgG~~~d~~~~~~~~L~~i~~~~~~ 267 (344)
T cd02922 200 LTWDDIKWLRKHT------KLPIVLK-----GVQTVEDAVLAAEYGVDGIVLS-NHGGRQLDTAPAPIEVLLEIRKHCPE 267 (344)
T ss_pred CCHHHHHHHHHhc------CCcEEEE-----cCCCHHHHHHHHHcCCCEEEEE-CCCcccCCCCCCHHHHHHHHHHHHHH
Confidence 4456666666533 3568888 33444444333 8999986 333554421 2222333444444333
Q ss_pred c--CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 363 L--NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 363 ~--gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
. ..|+|.+.-+- --.|++.++..|||++++.
T Consensus 268 ~~~~~~vi~~GGIr------------~G~Dv~kalaLGA~aV~iG 300 (344)
T cd02922 268 VFDKIEVYVDGGVR------------RGTDVLKALCLGAKAVGLG 300 (344)
T ss_pred hCCCceEEEeCCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 3 37888765433 3579999999999999985
No 190
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=68.15 E-value=35 Score=35.31 Aligned_cols=98 Identities=17% Similarity=0.199 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCCEEEec------CcCChhhHHHHHH-HHhccCCCCceEEeeec---CHHHHhcHHHHHhc-CCEEEEe
Q 008172 268 WDDIEFGIAEGVDFIAMS------FVCDADSVRHLKK-YVSGKSSRSIKVLAKIE---NLESLQKFEEIVEA-SDGIMVA 336 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~S------fV~sa~dv~~ir~-~l~~~~~~~i~IIaKIE---t~~av~nldeI~~~-sDgImIa 336 (575)
.+.+.+.++.|+|+|++. +-=|.++=.++-+ ..+..+ .++.||+-+- +.++++......+. +|++|+.
T Consensus 22 ~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~-~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~ 100 (285)
T TIGR00674 22 EKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN-GRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVV 100 (285)
T ss_pred HHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEc
Confidence 355678899999999874 3334444444433 343333 4578888884 33455444444444 8999997
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 337 RGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 337 RGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
+-... ..+.+.+...-+.|. .+.+.|+++.
T Consensus 101 pP~y~-~~~~~~i~~~~~~i~---~~~~~pi~lY 130 (285)
T TIGR00674 101 TPYYN-KPTQEGLYQHFKAIA---EEVDLPIILY 130 (285)
T ss_pred CCcCC-CCCHHHHHHHHHHHH---hcCCCCEEEE
Confidence 65432 112244444444554 4457899864
No 191
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=68.10 E-value=30 Score=34.76 Aligned_cols=146 Identities=12% Similarity=0.115 Sum_probs=88.1
Q ss_pred CCCCCccCHH-HHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc--------C
Q 008172 260 LPTLSKKDWD-DIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA--------S 330 (575)
Q Consensus 260 lp~lsekD~~-di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~--------s 330 (575)
-|..|++|.+ .+..|.++++..|++ ++..+..+++.|.. ..+++.+=|=-|.|-...+.-+.. +
T Consensus 12 ~p~~t~~~i~~lc~~A~~~~~~avcv----~p~~v~~a~~~l~~---~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GA 84 (211)
T TIGR00126 12 KADTTEEDIITLCAQAKTYKFAAVCV----NPSYVPLAKELLKG---TEVRICTVVGFPLGASTTDVKLYETKEAIKYGA 84 (211)
T ss_pred CCCCCHHHHHHHHHHHHhhCCcEEEe----CHHHHHHHHHHcCC---CCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCC
Confidence 4677888864 446789999999888 46788888988852 457888878666666554333222 4
Q ss_pred CEEEEeCCCCCCCCCC------CChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHcccceEE
Q 008172 331 DGIMVARGDLGVDIPL------EQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQYADALM 403 (575)
Q Consensus 331 DgImIaRGDLg~e~~~------e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~G~D~vm 403 (575)
|.|=+ -+.++. ..+..-.+.+.+.|. |+|+-+ +||. +.-+..|+..... ++..|+|.|=
T Consensus 85 dEiDv-----v~n~g~l~~g~~~~v~~ei~~i~~~~~--g~~lKv---IlE~----~~L~~~ei~~a~~ia~eaGADfvK 150 (211)
T TIGR00126 85 DEVDM-----VINIGALKDGNEEVVYDDIRAVVEACA--GVLLKV---IIET----GLLTDEEIRKACEICIDAGADFVK 150 (211)
T ss_pred CEEEe-----ecchHhhhCCcHHHHHHHHHHHHHHcC--CCeEEE---EEec----CCCCHHHHHHHHHHHHHhCCCEEE
Confidence 44422 233332 223333334455553 888877 5543 3345566655555 7889999987
Q ss_pred eccCcCCCCCHHHHHHHHHHHHH
Q 008172 404 LSGESAIGPFGQKAVSVLQMASS 426 (575)
Q Consensus 404 Ls~ETa~G~yPveaV~~m~~I~~ 426 (575)
-|.-=+.+.--++.|+.|++++.
T Consensus 151 TsTGf~~~gat~~dv~~m~~~v~ 173 (211)
T TIGR00126 151 TSTGFGAGGATVEDVRLMRNTVG 173 (211)
T ss_pred eCCCCCCCCCCHHHHHHHHHHhc
Confidence 65211112223577788877653
No 192
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=67.96 E-value=1.1e+02 Score=28.82 Aligned_cols=125 Identities=14% Similarity=0.076 Sum_probs=65.6
Q ss_pred HHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCC---CCCCC-C
Q 008172 271 IEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARGD---LGVDI-P 345 (575)
Q Consensus 271 i~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGD---Lg~e~-~ 345 (575)
++.+.+.|+|++-++.-.. ....++.... . ...+-.-..+.+ .+.+..+. +|.|++++.. -.... +
T Consensus 65 ~~~a~~~g~~~vh~~~~~~--~~~~~~~~~~-~---~~~~g~~~~t~~---~~~~~~~~g~d~i~~~~~~~~~~~~~~~~ 135 (196)
T cd00564 65 VDLALAVGADGVHLGQDDL--PVAEARALLG-P---DLIIGVSTHSLE---EALRAEELGADYVGFGPVFPTPTKPGAGP 135 (196)
T ss_pred HHHHHHcCCCEEecCcccC--CHHHHHHHcC-C---CCEEEeeCCCHH---HHHHHhhcCCCEEEECCccCCCCCCCCCC
Confidence 4567899999997775322 3344444332 1 233444444432 23333333 8999997542 11111 1
Q ss_pred CCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHH
Q 008172 346 LEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVL 421 (575)
Q Consensus 346 ~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m 421 (575)
... ...-+++ +.....|++++.. .+.. ++..+...|+|++.+.+--..-.-|.++++.+
T Consensus 136 ~~~-~~~~~~~---~~~~~~pv~a~GG----------i~~~---~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l 194 (196)
T cd00564 136 PLG-LELLREI---AELVEIPVVAIGG----------ITPE---NAAEVLAAGADGVAVISAITGADDPAAAAREL 194 (196)
T ss_pred CCC-HHHHHHH---HHhCCCCEEEECC----------CCHH---HHHHHHHcCCCEEEEehHhhcCCCHHHHHHHH
Confidence 111 1222222 3336799998643 3333 44555668999999875443334466665543
No 193
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=67.93 E-value=1.1e+02 Score=30.06 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=57.5
Q ss_pred CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcC---CCCCHHHHHHHHHHHHHHHhhhhhhhhhHHh
Q 008172 364 NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESA---IGPFGQKAVSVLQMASSRMELWSREENRQSA 440 (575)
Q Consensus 364 gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa---~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~ 440 (575)
+.++.++|-+ +--....++..-+.++..|+.+|||.+-+.--.. .|.| -+..+.+..+++.+..... +-
T Consensus 50 ~~~~~v~~~~--~fp~g~~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~-~~~~~ei~~v~~~~~g~~l-----kv 121 (203)
T cd00959 50 GSGVKVCTVI--GFPLGATTTEVKVAEAREAIADGADEIDMVINIGALKSGDY-EAVYEEIAAVVEACGGAPL-----KV 121 (203)
T ss_pred CCCcEEEEEE--ecCCCCCcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCH-HHHHHHHHHHHHhcCCCeE-----EE
Confidence 4556655432 1112224566678889999999999988753322 3343 3455556666555431100 00
Q ss_pred hhcccccCCCCCCchhhHHHHHHHHHHHhcCCcEEEEEcCChhH
Q 008172 441 LCGQRQLGESLHDRIAEQICNCAVDMANNLGVDAIFVYTKHGHM 484 (575)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~AkaIVVfT~SG~T 484 (575)
+ ++ . ....+..-..++++|.+++|+ ++=|.||++
T Consensus 122 I--~e----~--~~l~~~~i~~a~ria~e~GaD--~IKTsTG~~ 155 (203)
T cd00959 122 I--LE----T--GLLTDEEIIKACEIAIEAGAD--FIKTSTGFG 155 (203)
T ss_pred E--Ee----c--CCCCHHHHHHHHHHHHHhCCC--EEEcCCCCC
Confidence 0 00 0 011233556678899999999 566667865
No 194
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=67.55 E-value=1.5e+02 Score=30.35 Aligned_cols=153 Identities=12% Similarity=0.072 Sum_probs=92.7
Q ss_pred CCCccCHHHH-HHHHHcCCCEEEec-CcCChhhHHHHHHHHhccCCCCceEEeee-cCHHHHhcHHHHHhc-----CCEE
Q 008172 262 TLSKKDWDDI-EFGIAEGVDFIAMS-FVCDADSVRHLKKYVSGKSSRSIKVLAKI-ENLESLQKFEEIVEA-----SDGI 333 (575)
Q Consensus 262 ~lsekD~~di-~~al~~gvd~I~~S-fV~sa~dv~~ir~~l~~~~~~~i~IIaKI-Et~~av~nldeI~~~-----sDgI 333 (575)
.++..++..+ +...+.|++.|=+- |+.+++|.+.++.+.... .++.+.+-+ -+.++++ ..++. .|.|
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~--~~~~~~~l~r~~~~~v~---~a~~~~~~~~~~~i 90 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIAREV--LNAEICGLARAVKKDID---AAAEALKPAKVDRI 90 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhC--CCCEEEEEccCCHhhHH---HHHHhCCCCCCCEE
Confidence 4566666555 44557999998774 445788876666654322 345555555 2334443 33333 4655
Q ss_pred EEe--CCCCC----CCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHH-HHcccceEEecc
Q 008172 334 MVA--RGDLG----VDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEA-VRQYADALMLSG 406 (575)
Q Consensus 334 mIa--RGDLg----~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~na-v~~G~D~vmLs~ 406 (575)
-+. -.|.- .....++....-+..++.++++|..+.+. ....++-+.+.+.+++.. ...|+|.+.|.
T Consensus 91 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~------~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~- 163 (268)
T cd07940 91 HTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFS------AEDATRTDLDFLIEVVEAAIEAGATTINIP- 163 (268)
T ss_pred EEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEe------eecCCCCCHHHHHHHHHHHHHcCCCEEEEC-
Confidence 552 11110 01112333344557888999999877752 223445567777777764 55799999998
Q ss_pred CcCCCCCHHHHHHHHHHHHH
Q 008172 407 ESAIGPFGQKAVSVLQMASS 426 (575)
Q Consensus 407 ETa~G~yPveaV~~m~~I~~ 426 (575)
+|.=.-+|.+.-+.++.+-+
T Consensus 164 DT~G~~~P~~v~~lv~~l~~ 183 (268)
T cd07940 164 DTVGYLTPEEFGELIKKLKE 183 (268)
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 88878899998888777643
No 195
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=67.44 E-value=1.5e+02 Score=30.20 Aligned_cols=128 Identities=15% Similarity=0.215 Sum_probs=70.3
Q ss_pred cCHHHHHHHHHcCCCEEEec--CcCChhhHHHHHHHHhccCCCCceEEeeec-----------------C------HHHH
Q 008172 266 KDWDDIEFGIAEGVDFIAMS--FVCDADSVRHLKKYVSGKSSRSIKVLAKIE-----------------N------LESL 320 (575)
Q Consensus 266 kD~~di~~al~~gvd~I~~S--fV~sa~dv~~ir~~l~~~~~~~i~IIaKIE-----------------t------~~av 320 (575)
++.+|++..+..|++.|++. ++++++-+.++.+.... . +|+.-+. . .+.+
T Consensus 84 ~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~~~---~--~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~ 158 (254)
T TIGR00735 84 KSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRFGS---Q--CIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAV 158 (254)
T ss_pred CCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHcCC---C--CEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHH
Confidence 46788888899999988765 45677777776665521 1 1222222 1 1122
Q ss_pred hcHHHHHhc-CCEEEEeCCCCCCC--CCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHc
Q 008172 321 QKFEEIVEA-SDGIMVARGDLGVD--IPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQ 397 (575)
Q Consensus 321 ~nldeI~~~-sDgImIaRGDLg~e--~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~ 397 (575)
+-+..+.+. +|.|.+- |+..+ .+-.++. .-+++ +...+.|++.+..+- ...|+..+...
T Consensus 159 ~~~~~l~~~G~~~iivt--~i~~~g~~~g~~~~-~~~~i---~~~~~ipvia~GGi~------------s~~di~~~~~~ 220 (254)
T TIGR00735 159 EWAKEVEKLGAGEILLT--SMDKDGTKSGYDLE-LTKAV---SEAVKIPVIASGGAG------------KPEHFYEAFTK 220 (254)
T ss_pred HHHHHHHHcCCCEEEEe--CcCcccCCCCCCHH-HHHHH---HHhCCCCEEEeCCCC------------CHHHHHHHHHc
Confidence 222333333 6888883 22211 1112222 12222 334589999876433 34455666666
Q ss_pred c-cceEEeccCcCCCCCHHH
Q 008172 398 Y-ADALMLSGESAIGPFGQK 416 (575)
Q Consensus 398 G-~D~vmLs~ETa~G~yPve 416 (575)
| +|++|++.=--.|+++++
T Consensus 221 g~~dgv~~g~a~~~~~~~~~ 240 (254)
T TIGR00735 221 GKADAALAASVFHYREITIG 240 (254)
T ss_pred CCcceeeEhHHHhCCCCCHH
Confidence 7 999998633334566544
No 196
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=67.36 E-value=1.6e+02 Score=30.46 Aligned_cols=159 Identities=15% Similarity=0.138 Sum_probs=89.8
Q ss_pred CCCccCHHHHH-HHHHcCCCEEEecC-cCChhhHHHHHHHHhccCCCCceEEeeecC-HHHH-----hcHHHHHhc-CCE
Q 008172 262 TLSKKDWDDIE-FGIAEGVDFIAMSF-VCDADSVRHLKKYVSGKSSRSIKVLAKIEN-LESL-----QKFEEIVEA-SDG 332 (575)
Q Consensus 262 ~lsekD~~di~-~al~~gvd~I~~Sf-V~sa~dv~~ir~~l~~~~~~~i~IIaKIEt-~~av-----~nldeI~~~-sDg 332 (575)
.+|..++..+- ...+.|+|.|=+.| --++.++..++.+.+.. .++..+.+-.-. ..++ ..++..++. .|.
T Consensus 16 ~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~g~~~ 94 (273)
T cd07941 16 SFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLK-LKHAKLAAFGSTRRAGVKAEEDPNLQALLEAGTPV 94 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcC-CCCcEEEEEecccccCCCccchHHHHHHHhCCCCE
Confidence 45556655554 45579999998744 34677777776554332 123344432211 1111 123344444 566
Q ss_pred EEEe--CCCC----CCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHcccceEEec
Q 008172 333 IMVA--RGDL----GVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQYADALMLS 405 (575)
Q Consensus 333 ImIa--RGDL----g~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~G~D~vmLs 405 (575)
|.+- -.|+ ......++.....+..++.++++|..|.+...-+ ...++-+...+.+++. +...|+|.+.|.
T Consensus 95 i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~---~d~~~~~~~~~~~~~~~~~~~g~~~i~l~ 171 (273)
T cd07941 95 VTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF---FDGYKANPEYALATLKAAAEAGADWLVLC 171 (273)
T ss_pred EEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec---cccCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 6552 1121 0112234555566789999999999887631111 1122334444556655 345699999987
Q ss_pred cCcCCCCCHHHHHHHHHHHH
Q 008172 406 GESAIGPFGQKAVSVLQMAS 425 (575)
Q Consensus 406 ~ETa~G~yPveaV~~m~~I~ 425 (575)
+|.=...|.+.-++++.+.
T Consensus 172 -DT~G~~~P~~v~~lv~~l~ 190 (273)
T cd07941 172 -DTNGGTLPHEIAEIVKEVR 190 (273)
T ss_pred -cCCCCCCHHHHHHHHHHHH
Confidence 8888889988877766554
No 197
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=67.22 E-value=57 Score=33.59 Aligned_cols=138 Identities=14% Similarity=0.142 Sum_probs=78.1
Q ss_pred CHHHHHHHHHcCCCEEEec-CcCC------hhhHHHHHHHHhccCCCCceEEee-------ecCHHHHhcHH---HHHhc
Q 008172 267 DWDDIEFGIAEGVDFIAMS-FVCD------ADSVRHLKKYVSGKSSRSIKVLAK-------IENLESLQKFE---EIVEA 329 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~S-fV~s------a~dv~~ir~~l~~~~~~~i~IIaK-------IEt~~av~nld---eI~~~ 329 (575)
-...++.+++.|+|.|.+- ++.+ .+++.++++.+.+.| +.+++- +|+..-.+.+. .++..
T Consensus 95 ~~~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g---~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e 171 (267)
T PRK07226 95 LVGTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWG---MPLLAMMYPRGPGIKNEYDPEVVAHAARVAAE 171 (267)
T ss_pred eeecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcC---CcEEEEEecCCCccCCCccHHHHHHHHHHHHH
Confidence 3455778999999965543 2222 224444445454444 333332 45532111111 22211
Q ss_pred --CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCC-Chhh-HhhHHHHHHcccceEEec
Q 008172 330 --SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTP-TRAE-VADVSEAVRQYADALMLS 405 (575)
Q Consensus 330 --sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~P-trAE-v~Dv~nav~~G~D~vmLs 405 (575)
+|.|=.. ++. . +...+++.+ ....||..+.- +.+ |..+ ...+..++..|++++..+
T Consensus 172 ~GAD~vKt~-------~~~-~-~~~l~~~~~---~~~ipV~a~GG--------i~~~~~~~~l~~v~~~~~aGA~Gis~g 231 (267)
T PRK07226 172 LGADIVKTN-------YTG-D-PESFREVVE---GCPVPVVIAGG--------PKTDTDREFLEMVRDAMEAGAAGVAVG 231 (267)
T ss_pred HCCCEEeeC-------CCC-C-HHHHHHHHH---hCCCCEEEEeC--------CCCCCHHHHHHHHHHHHHcCCcEEehh
Confidence 6777554 111 1 233344433 34689877532 122 3333 344556788999999999
Q ss_pred cCcCCCCCHHHHHHHHHHHHHH
Q 008172 406 GESAIGPFGQKAVSVLQMASSR 427 (575)
Q Consensus 406 ~ETa~G~yPveaV~~m~~I~~~ 427 (575)
........|.+.++.+..++++
T Consensus 232 r~i~~~~~p~~~~~~l~~~v~~ 253 (267)
T PRK07226 232 RNVFQHEDPEAITRAISAVVHE 253 (267)
T ss_pred hhhhcCCCHHHHHHHHHHHHhC
Confidence 9999999999999999988754
No 198
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=67.17 E-value=61 Score=35.11 Aligned_cols=92 Identities=22% Similarity=0.368 Sum_probs=54.9
Q ss_pred ChhhHHHHHHHHhccCCCCceEEee-ecCHHHHhcHHHHHhc-CCEEEEe-CCCCCCCCCCCChHHHHHHHHHHHHHc--
Q 008172 289 DADSVRHLKKYVSGKSSRSIKVLAK-IENLESLQKFEEIVEA-SDGIMVA-RGDLGVDIPLEQIPTVQEIIIHVCRQL-- 363 (575)
Q Consensus 289 sa~dv~~ir~~l~~~~~~~i~IIaK-IEt~~av~nldeI~~~-sDgImIa-RGDLg~e~~~e~v~~~Qk~Ii~~c~~~-- 363 (575)
+.+++..+|+.. ...|+.| |-++ +......+. +|+|.|. -| |..+ ...+.....+.+.+...
T Consensus 209 ~~~~l~~lr~~~------~~PvivKgv~~~---~dA~~a~~~G~d~I~vsnhG--Gr~l--d~~~~~~~~l~~i~~a~~~ 275 (351)
T cd04737 209 SPADIEFIAKIS------GLPVIVKGIQSP---EDADVAINAGADGIWVSNHG--GRQL--DGGPASFDSLPEIAEAVNH 275 (351)
T ss_pred CHHHHHHHHHHh------CCcEEEecCCCH---HHHHHHHHcCCCEEEEeCCC--CccC--CCCchHHHHHHHHHHHhCC
Confidence 778888888755 2578899 3332 333333344 8999994 22 2222 11111222222333333
Q ss_pred CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 364 NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 364 gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
..|+|....+- .-.|+..++..|||+||+.
T Consensus 276 ~i~vi~dGGIr------------~g~Di~kaLalGA~~V~iG 305 (351)
T cd04737 276 RVPIIFDSGVR------------RGEHVFKALASGADAVAVG 305 (351)
T ss_pred CCeEEEECCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 48999865443 4579999999999999985
No 199
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=67.12 E-value=74 Score=33.82 Aligned_cols=126 Identities=16% Similarity=0.228 Sum_probs=67.4
Q ss_pred CCCccCHHHH--------HHHHHcCCCEEEecC-------------cCCh----------------hhHHHHHHHHhccC
Q 008172 262 TLSKKDWDDI--------EFGIAEGVDFIAMSF-------------VCDA----------------DSVRHLKKYVSGKS 304 (575)
Q Consensus 262 ~lsekD~~di--------~~al~~gvd~I~~Sf-------------V~sa----------------~dv~~ir~~l~~~~ 304 (575)
.||+.|++.+ +.+.+.|+|+|=+.. .+.. +-++++|+.+ |
T Consensus 143 ~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~v---G 219 (336)
T cd02932 143 ELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVW---P 219 (336)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHc---C
Confidence 5777777665 577889999996542 2232 3344444444 2
Q ss_pred CCCceEEeeecC----------HHHHhcHHHHHhc-CCEEEEeCCCCCCCC--CCCChHHHHHHHHH-HHHHcCCCEEEe
Q 008172 305 SRSIKVLAKIEN----------LESLQKFEEIVEA-SDGIMVARGDLGVDI--PLEQIPTVQEIIIH-VCRQLNKPVIVA 370 (575)
Q Consensus 305 ~~~i~IIaKIEt----------~~av~nldeI~~~-sDgImIaRGDLg~e~--~~e~v~~~Qk~Ii~-~c~~~gKPviva 370 (575)
++..|..||=- .++++-+..+.+. .|.|=|..|...... +... ..+....+ .......||+..
T Consensus 220 -~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~--~~~~~~~~~ir~~~~iPVi~~ 296 (336)
T cd02932 220 -EDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGP--GYQVPFAERIRQEAGIPVIAV 296 (336)
T ss_pred -CCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCc--cccHHHHHHHHhhCCCCEEEe
Confidence 45677777541 2233333333333 688877766543221 2111 11112222 233458999875
Q ss_pred hhhHHhhhcCCCCChhhHhhHHHHHHcc-cceEEec
Q 008172 371 SQLLESMVEYPTPTRAEVADVSEAVRQY-ADALMLS 405 (575)
Q Consensus 371 Tq~LeSM~~~p~PtrAEv~Dv~nav~~G-~D~vmLs 405 (575)
-.+ -|.+ |...++..| +|+|++.
T Consensus 297 G~i---------~t~~---~a~~~l~~g~aD~V~~g 320 (336)
T cd02932 297 GLI---------TDPE---QAEAILESGRADLVALG 320 (336)
T ss_pred CCC---------CCHH---HHHHHHHcCCCCeehhh
Confidence 432 2333 335567777 9999986
No 200
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=67.11 E-value=50 Score=33.37 Aligned_cols=144 Identities=24% Similarity=0.260 Sum_probs=84.6
Q ss_pred HHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHc
Q 008172 318 ESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQ 397 (575)
Q Consensus 318 ~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~ 397 (575)
++++|+.+|-+.+|.-+||= .--++| +-||.+ .||..||.++++ .
T Consensus 53 ~gv~dIkai~~~v~vPIIGI--iKrd~~------------------~s~v~I------------TptlkeVd~L~~---~ 97 (229)
T COG3010 53 EGVEDIKAIRAVVDVPIIGI--IKRDYP------------------DSPVRI------------TPTLKEVDALAE---A 97 (229)
T ss_pred cchhhHHHHHhhCCCCeEEE--EecCCC------------------CCCcee------------cccHHHHHHHHH---C
Confidence 37888888888888777750 000111 345665 599999988877 7
Q ss_pred ccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcCCcEEEE
Q 008172 398 YADALMLSGESAIGPFGQKAVSVLQMASSRMELWSREENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLGVDAIFV 477 (575)
Q Consensus 398 G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~AkaIVV 477 (575)
|+|-+-+.+- . =+-|.+ .+.+++.+ +++... + -+.+. .+..| ...|.+++++ ||-
T Consensus 98 Ga~IIA~DaT-~-R~RP~~---~~~~~i~~-~k~~~~------l-~MAD~-----St~ee------~l~a~~~G~D-~IG 152 (229)
T COG3010 98 GADIIAFDAT-D-RPRPDG---DLEELIAR-IKYPGQ------L-AMADC-----STFEE------GLNAHKLGFD-IIG 152 (229)
T ss_pred CCcEEEeecc-c-CCCCcc---hHHHHHHH-hhcCCc------E-EEecc-----CCHHH------HHHHHHcCCc-EEe
Confidence 9998888642 2 244554 23344433 222110 0 01111 11222 3457889999 899
Q ss_pred EcCChhHH-------------HHHhccCCCCcEEEE--cCcHHHHHHhcccCCcEEEEecCC
Q 008172 478 YTKHGHMA-------------SLLSRNRPNPPIFAF--TNDDSTRMALNLQWGVIPVLVNLS 524 (575)
Q Consensus 478 fT~SG~TA-------------r~VSr~RP~~PIiAv--T~~~~~aR~L~L~~GV~Pvl~~~~ 524 (575)
-|.||+|- +.+++ +.|++||= -+++..|++. +..|+..+.+...
T Consensus 153 TTLsGYT~~~~~~~~pDf~lvk~l~~--~~~~vIAEGr~~tP~~Ak~a-~~~Ga~aVvVGsA 211 (229)
T COG3010 153 TTLSGYTGYTEKPTEPDFQLVKQLSD--AGCRVIAEGRYNTPEQAKKA-IEIGADAVVVGSA 211 (229)
T ss_pred cccccccCCCCCCCCCcHHHHHHHHh--CCCeEEeeCCCCCHHHHHHH-HHhCCeEEEECcc
Confidence 99999987 23333 66777765 3556666665 5667777766544
No 201
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=66.72 E-value=1.3e+02 Score=29.06 Aligned_cols=128 Identities=20% Similarity=0.244 Sum_probs=72.9
Q ss_pred HHHHHHHHcCCCEEEe-----cCcCCh----hhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCC
Q 008172 269 DDIEFGIAEGVDFIAM-----SFVCDA----DSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARG 338 (575)
Q Consensus 269 ~di~~al~~gvd~I~~-----SfV~sa----~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRG 338 (575)
+.++.+.+.|+|+|-+ +|+.+. +.++++++.. + ..+.+-.++.+++ +.++.+.+. +||+.|-
T Consensus 16 ~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~---~-~~~~v~l~~~d~~--~~~~~~~~~g~dgv~vh-- 87 (211)
T cd00429 16 EELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT---D-LPLDVHLMVENPE--RYIEAFAKAGADIITFH-- 87 (211)
T ss_pred HHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC---C-CcEEEEeeeCCHH--HHHHHHHHcCCCEEEEC--
Confidence 4567888999999998 776444 4555655543 1 2233456666653 347777766 8998773
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEecc-C-cCCC-CCHH
Q 008172 339 DLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSG-E-SAIG-PFGQ 415 (575)
Q Consensus 339 DLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~-E-Ta~G-~yPv 415 (575)
.... ......++.+++.|.-+++.+. |+.. .+....+..++|.+++.+ . +..| .+|.
T Consensus 88 -----~~~~---~~~~~~~~~~~~~~~~~g~~~~----------~~~~--~~~~~~~~~~~d~i~~~~~~~g~tg~~~~~ 147 (211)
T cd00429 88 -----AEAT---DHLHRTIQLIKELGMKAGVALN----------PGTP--VEVLEPYLDEVDLVLVMSVNPGFGGQKFIP 147 (211)
T ss_pred -----ccch---hhHHHHHHHHHHCCCeEEEEec----------CCCC--HHHHHHHHhhCCEEEEEEECCCCCCcccCH
Confidence 1111 1224558888999998887542 2111 112333345578776532 1 2223 4555
Q ss_pred HHHHHHHHH
Q 008172 416 KAVSVLQMA 424 (575)
Q Consensus 416 eaV~~m~~I 424 (575)
...+.++++
T Consensus 148 ~~~~~i~~~ 156 (211)
T cd00429 148 EVLEKIRKL 156 (211)
T ss_pred HHHHHHHHH
Confidence 555554444
No 202
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=66.13 E-value=1.3e+02 Score=31.99 Aligned_cols=132 Identities=14% Similarity=0.191 Sum_probs=68.4
Q ss_pred CCCccCHHHH--------HHHHHcCCCEEEe-------------cCcCCh------------hhHHHHHHHHhccCCCCc
Q 008172 262 TLSKKDWDDI--------EFGIAEGVDFIAM-------------SFVCDA------------DSVRHLKKYVSGKSSRSI 308 (575)
Q Consensus 262 ~lsekD~~di--------~~al~~gvd~I~~-------------SfV~sa------------~dv~~ir~~l~~~~~~~i 308 (575)
.||+.|++.+ +++.+.|+|+|=+ |..+.. .-+.++.+.+++.-+++.
T Consensus 138 ~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~ 217 (338)
T cd04733 138 AMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGF 217 (338)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 5777777555 5788899999965 333321 112222222322212567
Q ss_pred eEEeeec---------C-HHHHhcHHHHHhc-CCEEEEeCCCCCCCC-------CCCChHHHHHHHHHHHH-HcCCCEEE
Q 008172 309 KVLAKIE---------N-LESLQKFEEIVEA-SDGIMVARGDLGVDI-------PLEQIPTVQEIIIHVCR-QLNKPVIV 369 (575)
Q Consensus 309 ~IIaKIE---------t-~~av~nldeI~~~-sDgImIaRGDLg~e~-------~~e~v~~~Qk~Ii~~c~-~~gKPviv 369 (575)
.|..||= + .++++=++.+.+. .|.|=|.-|-..-.. +...-+..+....+..+ +.+.||++
T Consensus 218 ~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~ 297 (338)
T cd04733 218 PVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMV 297 (338)
T ss_pred eEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEE
Confidence 7888883 1 2333333444333 688877655321111 00000112223333333 35899998
Q ss_pred ehhhHHhhhcCCCCChhhHhhHHHHHHcc-cceEEec
Q 008172 370 ASQLLESMVEYPTPTRAEVADVSEAVRQY-ADALMLS 405 (575)
Q Consensus 370 aTq~LeSM~~~p~PtrAEv~Dv~nav~~G-~D~vmLs 405 (575)
...+ -| ..+...++..| +|.|+++
T Consensus 298 ~G~i---------~t---~~~a~~~l~~g~aD~V~lg 322 (338)
T cd04733 298 TGGF---------RT---RAAMEQALASGAVDGIGLA 322 (338)
T ss_pred eCCC---------CC---HHHHHHHHHcCCCCeeeeC
Confidence 6543 12 23446677776 8999997
No 203
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=65.96 E-value=1.3e+02 Score=30.18 Aligned_cols=130 Identities=13% Similarity=0.032 Sum_probs=77.9
Q ss_pred HHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEee--ecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCCCCC
Q 008172 271 IEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAK--IENLESLQKFEEIVEA-SDGIMVARGDLGVDIPLE 347 (575)
Q Consensus 271 i~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaK--IEt~~av~nldeI~~~-sDgImIaRGDLg~e~~~e 347 (575)
++.|++.|+|+|=++ ++..++.++|+.+.. + .+|.- ..+.+. ..+-.+. +|++.+|+= +. .....
T Consensus 80 ~dlA~~~~adGVHLg--~~d~~~~~~r~~~~~---~--~iiG~s~~~s~~~---a~~A~~~gaDYv~~Gpv-~t-~tK~~ 147 (221)
T PRK06512 80 SRIAGRVKADGLHIE--GNLAALAEAIEKHAP---K--MIVGFGNLRDRHG---AMEIGELRPDYLFFGKL-GA-DNKPE 147 (221)
T ss_pred HHHHHHhCCCEEEEC--ccccCHHHHHHhcCC---C--CEEEecCCCCHHH---HHHhhhcCCCEEEECCC-CC-CCCCC
Confidence 466888999999776 333457777776631 1 24432 223322 2222222 899999986 32 22211
Q ss_pred ChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHH
Q 008172 348 QIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMAS 425 (575)
Q Consensus 348 ~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~ 425 (575)
.-|.--..+-+.|+....||+.-..+ + ..++......|+|++-..+.-..-..|.++++-+..+.
T Consensus 148 ~~p~gl~~l~~~~~~~~iPvvAIGGI----------~---~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~ 212 (221)
T PRK06512 148 AHPRNLSLAEWWAEMIEIPCIVQAGS----------D---LASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALL 212 (221)
T ss_pred CCCCChHHHHHHHHhCCCCEEEEeCC----------C---HHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHH
Confidence 11111122224566778999863322 2 23456667889999999888877888999998777664
No 204
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=65.92 E-value=10 Score=42.15 Aligned_cols=48 Identities=23% Similarity=0.372 Sum_probs=40.0
Q ss_pred eEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHH
Q 008172 92 KMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQ 139 (575)
Q Consensus 92 kIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~ 139 (575)
.+=+.+|..-.+.+..+.|+++|++++-++.+||..+...+.|+.+|+
T Consensus 214 ~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~ 261 (450)
T TIGR01302 214 IVGAAVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKK 261 (450)
T ss_pred EEEEEecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHH
Confidence 345577777778899999999999999999999988877777777764
No 205
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=65.21 E-value=47 Score=34.20 Aligned_cols=99 Identities=18% Similarity=0.166 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCCEEEecC------cCChhhHHHHHHHHhccCCCCceEEeeecC---HHHHhcHHHHHhc-CCEEEEeC
Q 008172 268 WDDIEFGIAEGVDFIAMSF------VCDADSVRHLKKYVSGKSSRSIKVLAKIEN---LESLQKFEEIVEA-SDGIMVAR 337 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~Sf------V~sa~dv~~ir~~l~~~~~~~i~IIaKIEt---~~av~nldeI~~~-sDgImIaR 337 (575)
.+.+++.++.|+++|++.= --|.++=+++-+...+....++.|++-+-. .++++......+. +|++|+.+
T Consensus 24 ~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~ 103 (284)
T cd00950 24 ERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVT 103 (284)
T ss_pred HHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcc
Confidence 4567889999999998652 234444444444333332246788888853 4555555555555 89999986
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 338 GDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 338 GDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
-... ..+.+.+...-+.|++ +.+.|+++-
T Consensus 104 P~~~-~~~~~~l~~~~~~ia~---~~~~pi~lY 132 (284)
T cd00950 104 PYYN-KPSQEGLYAHFKAIAE---ATDLPVILY 132 (284)
T ss_pred cccC-CCCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 6442 1122445555555555 358999975
No 206
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=65.03 E-value=1.7e+02 Score=31.59 Aligned_cols=106 Identities=10% Similarity=0.182 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEE
Q 008172 290 ADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIV 369 (575)
Q Consensus 290 a~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviv 369 (575)
.+.++.++++..+.| +.+++-+-+.+.++-+. +.+|.+-||-+++ . +-.+++.+-+.||||++
T Consensus 143 ~~gL~~L~~~~~~~G---l~v~tev~d~~~~~~l~---~~vd~lqIgAr~~------~-----N~~LL~~va~~~kPViL 205 (335)
T PRK08673 143 EEGLKLLAEAREETG---LPIVTEVMDPRDVELVA---EYVDILQIGARNM------Q-----NFDLLKEVGKTNKPVLL 205 (335)
T ss_pred HHHHHHHHHHHHHcC---CcEEEeeCCHHHHHHHH---HhCCeEEECcccc------c-----CHHHHHHHHcCCCcEEE
Confidence 455666777777665 78999888887766555 4589999986655 2 24566777889999999
Q ss_pred ehhhHHhhhcCCCCChhhHhhHHHHH-HcccceEEeccC-c-CCCCCHHHHHHH
Q 008172 370 ASQLLESMVEYPTPTRAEVADVSEAV-RQYADALMLSGE-S-AIGPFGQKAVSV 420 (575)
Q Consensus 370 aTq~LeSM~~~p~PtrAEv~Dv~nav-~~G~D~vmLs~E-T-a~G~yPveaV~~ 420 (575)
.|.|- .|-.|+-..+..+ ..|.+-++|..- + ..-.||-+.+.+
T Consensus 206 k~G~~--------~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl 251 (335)
T PRK08673 206 KRGMS--------ATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDL 251 (335)
T ss_pred eCCCC--------CCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhH
Confidence 87654 4556776666655 468877777532 3 444677666664
No 207
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=64.64 E-value=54 Score=35.50 Aligned_cols=135 Identities=18% Similarity=0.104 Sum_probs=71.3
Q ss_pred HHhcHHHHHhc-----CCEEEEeCCCCCCCCCCCChHHHHHHHHHH-HH--HcCCCEEEehhhHHhhhcCCCCChhhHhh
Q 008172 319 SLQKFEEIVEA-----SDGIMVARGDLGVDIPLEQIPTVQEIIIHV-CR--QLNKPVIVASQLLESMVEYPTPTRAEVAD 390 (575)
Q Consensus 319 av~nldeI~~~-----sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~-c~--~~gKPvivaTq~LeSM~~~p~PtrAEv~D 390 (575)
|+.|++.+++. +|+++.-+|=| +. ++ ...+|.|+-..-=.++...+.+...-+++
T Consensus 89 gl~dp~~~i~~a~~~g~dAv~~~~G~l-----------------~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~s 151 (348)
T PRK09250 89 LYFDPENIVKLAIEAGCNAVASTLGVL-----------------EAVARKYAHKIPFILKLNHNELLSYPNTYDQALTAS 151 (348)
T ss_pred cccCHHHHHHHHHhcCCCEEEeCHHHH-----------------HhccccccCCCCEEEEeCCCCCCCCCCCCcccceec
Confidence 56666555444 78998865543 33 11 23578777422111111112244555688
Q ss_pred HHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhhhhh--hHHhhhcccccCCCCC-CchhhHHHHHHHHHH
Q 008172 391 VSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSREEN--RQSALCGQRQLGESLH-DRIAEQICNCAVDMA 467 (575)
Q Consensus 391 v~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~ia~~av~~a 467 (575)
|-.|+..|+|||..+-=-. +.+=-+.++.+.++++++++|=.-.- .|. .=+....+.. .+..+ +...|+++|
T Consensus 152 VedAlrLGAdAV~~tvy~G-s~~E~~ml~~l~~i~~ea~~~GlPlv~~~Yp---RG~~i~~~~d~~~~~d-~Ia~AaRia 226 (348)
T PRK09250 152 VEDALRLGAVAVGATIYFG-SEESRRQIEEISEAFEEAHELGLATVLWSYL---RNSAFKKDGDYHTAAD-LTGQANHLA 226 (348)
T ss_pred HHHHHHCCCCEEEEEEecC-CHHHHHHHHHHHHHHHHHHHhCCCEEEEecc---cCcccCCcccccccHH-HHHHHHHHH
Confidence 9999999999998862211 22334566667777777776521100 000 0001111100 11234 455667899
Q ss_pred HhcCCcEE
Q 008172 468 NNLGVDAI 475 (575)
Q Consensus 468 ~~~~AkaI 475 (575)
.+++|+.|
T Consensus 227 aELGADIV 234 (348)
T PRK09250 227 ATIGADII 234 (348)
T ss_pred HHHcCCEE
Confidence 99999944
No 208
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=64.42 E-value=1.3e+02 Score=32.43 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=37.8
Q ss_pred CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHH-cccc
Q 008172 330 SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVR-QYAD 400 (575)
Q Consensus 330 sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~-~G~D 400 (575)
+|.+=||-+|+. +. .+++.+.+.|||+|+.|.| .|.+|+.....++. .|.+
T Consensus 110 v~~~KIaS~~~~------n~-----pLL~~~A~~gkPvilStGm---------atl~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 110 VPRFKIPSGEIT------NA-----PLLKKIARFGKPVILSTGM---------ATLEEIEAAVGVLRDAGTP 161 (329)
T ss_pred CCEEEECccccc------CH-----HHHHHHHhcCCcEEEECCC---------CCHHHHHHHHHHHHHcCCC
Confidence 678888877772 22 3567788899999998865 36788888888776 4654
No 209
>PRK08005 epimerase; Validated
Probab=64.37 E-value=1.3e+02 Score=30.33 Aligned_cols=137 Identities=9% Similarity=0.015 Sum_probs=84.0
Q ss_pred CCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCC
Q 008172 262 TLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLG 341 (575)
Q Consensus 262 ~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg 341 (575)
-+.+.=...+..-.+.|+|.|.+-+ ++..+..++-+.+++.| ....+.-+-+| -++.++.++...|.|+| ++
T Consensus 65 LMv~~P~~~i~~~~~~gad~It~H~-Ea~~~~~~~l~~Ik~~G-~k~GlAlnP~T--p~~~i~~~l~~vD~Vlv----Ms 136 (210)
T PRK08005 65 LMVSSPQRWLPWLAAIRPGWIFIHA-ESVQNPSEILADIRAIG-AKAGLALNPAT--PLLPYRYLALQLDALMI----MT 136 (210)
T ss_pred eccCCHHHHHHHHHHhCCCEEEEcc-cCccCHHHHHHHHHHcC-CcEEEEECCCC--CHHHHHHHHHhcCEEEE----EE
Confidence 3444444566777889999987654 55567777777788777 56788888887 57788999999999998 34
Q ss_pred CCCCC---CChHHHHHHHHHHHHHcCC-CEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCC--CCCHH
Q 008172 342 VDIPL---EQIPTVQEIIIHVCRQLNK-PVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAI--GPFGQ 415 (575)
Q Consensus 342 ~e~~~---e~v~~~Qk~Ii~~c~~~gK-PvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~--G~yPv 415 (575)
++-|. .-++..-++|-+......+ .+-+-. .=+. .-+...+..|+|.+.+. |++ .+.|.
T Consensus 137 V~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDG----------GI~~---~~i~~l~~aGad~~V~G--saiF~~~d~~ 201 (210)
T PRK08005 137 SEPDGRGQQFIAAMCEKVSQSREHFPAAECWADG----------GITL---RAARLLAAAGAQHLVIG--RALFTTANYD 201 (210)
T ss_pred ecCCCccceecHHHHHHHHHHHHhcccCCEEEEC----------CCCH---HHHHHHHHCCCCEEEEC--hHhhCCCCHH
Confidence 44443 4455555555544332221 222211 1111 12244667899988886 333 23355
Q ss_pred HHHHHH
Q 008172 416 KAVSVL 421 (575)
Q Consensus 416 eaV~~m 421 (575)
++++.|
T Consensus 202 ~~~~~~ 207 (210)
T PRK08005 202 VTLSQF 207 (210)
T ss_pred HHHHHH
Confidence 555543
No 210
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=64.27 E-value=3.1e+02 Score=32.66 Aligned_cols=67 Identities=21% Similarity=0.315 Sum_probs=43.5
Q ss_pred cCHHHHHHHHHcCCCEEEecC------cCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc----CCEEEE
Q 008172 266 KDWDDIEFGIAEGVDFIAMSF------VCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA----SDGIMV 335 (575)
Q Consensus 266 kD~~di~~al~~gvd~I~~Sf------V~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~----sDgImI 335 (575)
.|.++++.|++.|++.|.+.. --+.+...++..++. ++..+|+ |+ |+.+.+++... +|+++|
T Consensus 168 h~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip----~~~~~Vs--ES--GI~~~~d~~~l~~~G~davLI 239 (695)
T PRK13802 168 HTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLP----DDVIKVA--ES--GVFGAVEVEDYARAGADAVLV 239 (695)
T ss_pred CCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCC----CCcEEEE--cC--CCCCHHHHHHHHHCCCCEEEE
Confidence 678999999999999998864 223344444444442 3344444 33 77766666444 799999
Q ss_pred eCCCC
Q 008172 336 ARGDL 340 (575)
Q Consensus 336 aRGDL 340 (575)
|-.-+
T Consensus 240 Geslm 244 (695)
T PRK13802 240 GEGVA 244 (695)
T ss_pred CHHhh
Confidence 85444
No 211
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=63.94 E-value=1.5e+02 Score=30.15 Aligned_cols=140 Identities=11% Similarity=0.113 Sum_probs=81.6
Q ss_pred CCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCC--CceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCC
Q 008172 263 LSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSR--SIKVLAKIENLESLQKFEEIVEASDGIMVARGDL 340 (575)
Q Consensus 263 lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~--~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDL 340 (575)
+.+.=.+.+..-.+.|+|+|.+-+ ++..++.++-+.+++.| . ...+.-+=+| .++.++.++...|.|+|=
T Consensus 76 Mv~~P~~~i~~~~~aGad~It~H~-Ea~~~~~~~l~~Ik~~g-~~~kaGlalnP~T--p~~~i~~~l~~vD~VLiM---- 147 (228)
T PRK08091 76 MVRDQFEVAKACVAAGADIVTLQV-EQTHDLALTIEWLAKQK-TTVLIGLCLCPET--PISLLEPYLDQIDLIQIL---- 147 (228)
T ss_pred ccCCHHHHHHHHHHhCCCEEEEcc-cCcccHHHHHHHHHHCC-CCceEEEEECCCC--CHHHHHHHHhhcCEEEEE----
Confidence 333334566777899999987754 55567777777787776 4 5677777777 578899999999999983
Q ss_pred CCCCCC---CChHHHHHHHHH---HHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCC-C-C
Q 008172 341 GVDIPL---EQIPTVQEIIIH---VCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAI-G-P 412 (575)
Q Consensus 341 g~e~~~---e~v~~~Qk~Ii~---~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~-G-~ 412 (575)
+++-|. .-.+..-++|.+ ...++|--+.+. ++. .=+.. -+......|+|.+.+. |++ | .
T Consensus 148 tV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~Ie-------VDG-GI~~~---ti~~l~~aGaD~~V~G--SalF~~~ 214 (228)
T PRK08091 148 TLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLIS-------IDG-SMTLE---LASYLKQHQIDWVVSG--SALFSQG 214 (228)
T ss_pred EECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEE-------EEC-CCCHH---HHHHHHHCCCCEEEEC--hhhhCCC
Confidence 333332 223333333332 112334222221 011 11111 2345677999988875 343 2 2
Q ss_pred CHHHHHHHHHH
Q 008172 413 FGQKAVSVLQM 423 (575)
Q Consensus 413 yPveaV~~m~~ 423 (575)
.|.+.++.++.
T Consensus 215 d~~~~i~~l~~ 225 (228)
T PRK08091 215 ELKTTLKEWKS 225 (228)
T ss_pred CHHHHHHHHHH
Confidence 36666666553
No 212
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=63.56 E-value=51 Score=32.72 Aligned_cols=121 Identities=14% Similarity=0.278 Sum_probs=68.0
Q ss_pred cCHHHHHHHHHcCCCEEEecCcCCh---------hhHHHHHHHHhccCCCCceEEeeecCH---HHHhcHHHHHhc-CCE
Q 008172 266 KDWDDIEFGIAEGVDFIAMSFVCDA---------DSVRHLKKYVSGKSSRSIKVLAKIENL---ESLQKFEEIVEA-SDG 332 (575)
Q Consensus 266 kD~~di~~al~~gvd~I~~SfV~sa---------~dv~~ir~~l~~~~~~~i~IIaKIEt~---~av~nldeI~~~-sDg 332 (575)
.+.+.+..+...|+|+|++=.=.+. .++.++-..+.........++++|-.. ...++++ .+.. .||
T Consensus 9 ~~~~~~~~a~~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~-~l~~g~~g 87 (221)
T PF03328_consen 9 NSPKMLEKAAASGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLE-ALDAGADG 87 (221)
T ss_dssp TSHHHHHHHHTTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHH-HHHTTSSE
T ss_pred CCHHHHHHHHhcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhh-hcccCCCe
Confidence 4567788899999999998665555 455554444433222336788888554 4455566 5554 899
Q ss_pred EEEeCCCCCCCCCCCChHHHHHHHHHHHHHc--------CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEe
Q 008172 333 IMVARGDLGVDIPLEQIPTVQEIIIHVCRQL--------NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALML 404 (575)
Q Consensus 333 ImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~--------gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmL 404 (575)
||+ |.-+-+.--+++.+.++.. +...+++ |+||= ---..+.+++ -..|.|++++
T Consensus 88 I~l---------P~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~IET~-----~gv~~~~eI~--a~~~v~~l~~ 149 (221)
T PF03328_consen 88 IVL---------PKVESAEDARQAVAALRYPPAGRRGANGSTKIIP--MIETP-----EGVENLEEIA--AVPGVDGLFF 149 (221)
T ss_dssp EEE---------TT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEE--EE-SH-----HHHHTHHHHH--TSTTEEEEEE
T ss_pred eec---------cccCcHHHHHHHHHHHhhcccccccccCceEEEE--eeccH-----HHHhCHHhhc--ccCCeeEEEe
Confidence 999 4433344455666777654 2344443 34431 1111233343 2358888887
Q ss_pred c
Q 008172 405 S 405 (575)
Q Consensus 405 s 405 (575)
.
T Consensus 150 G 150 (221)
T PF03328_consen 150 G 150 (221)
T ss_dssp -
T ss_pred C
Confidence 4
No 213
>PRK15452 putative protease; Provisional
Probab=63.51 E-value=21 Score=39.87 Aligned_cols=88 Identities=15% Similarity=0.240 Sum_probs=57.0
Q ss_pred ceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCCh-HHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChh
Q 008172 308 IKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQI-PTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRA 386 (575)
Q Consensus 308 i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v-~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrA 386 (575)
+.+.|...+.++++ ..|-.=+|.|.+|-..++.-...... ..-.++.++.|+++|+.+.++++.+ |...
T Consensus 4 peLlapag~~e~l~--aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i--------~~e~ 73 (443)
T PRK15452 4 PELLSPAGTLKNMR--YAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIA--------PHNA 73 (443)
T ss_pred cEEEEECCCHHHHH--HHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCc--------CCHH
Confidence 45666666665553 22223399999997777763321000 1235678899999999999987644 5555
Q ss_pred hHhhHHH----HHHcccceEEec
Q 008172 387 EVADVSE----AVRQYADALMLS 405 (575)
Q Consensus 387 Ev~Dv~n----av~~G~D~vmLs 405 (575)
|..++.. ....|+|+++.+
T Consensus 74 el~~~~~~l~~l~~~gvDgvIV~ 96 (443)
T PRK15452 74 KLKTFIRDLEPVIAMKPDALIMS 96 (443)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEc
Confidence 6544443 445699999997
No 214
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=63.50 E-value=1.5e+02 Score=29.16 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=61.8
Q ss_pred HHHHHHHcCCCEEEecC----------------cCChhhHHHHHHHHhccCCCCceEEeeec----CH-HHHhcHHHHHh
Q 008172 270 DIEFGIAEGVDFIAMSF----------------VCDADSVRHLKKYVSGKSSRSIKVLAKIE----NL-ESLQKFEEIVE 328 (575)
Q Consensus 270 di~~al~~gvd~I~~Sf----------------V~sa~dv~~ir~~l~~~~~~~i~IIaKIE----t~-~av~nldeI~~ 328 (575)
..+.+.+.|+|+|-+.+ .++++.+.++-+.+.+.- .+.+..|+- .. +..+-+..+.+
T Consensus 72 aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~--~~~v~vk~r~~~~~~~~~~~~~~~l~~ 149 (231)
T cd02801 72 AAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAV--PIPVTVKIRLGWDDEEETLELAKALED 149 (231)
T ss_pred HHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhc--CCCEEEEEeeccCCchHHHHHHHHHHH
Confidence 33455677999997643 245555666555554332 156777763 11 33333333333
Q ss_pred c-CCEEEEeCCCCCC-CCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHc-ccceEEec
Q 008172 329 A-SDGIMVARGDLGV-DIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQ-YADALMLS 405 (575)
Q Consensus 329 ~-sDgImIaRGDLg~-e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~-G~D~vmLs 405 (575)
. +|+|-+.-+.-.. ..+...+.. +-+.++..+.|++.... .-+. .|+..++.. |+|++|+.
T Consensus 150 ~Gvd~i~v~~~~~~~~~~~~~~~~~----~~~i~~~~~ipvi~~Gg---------i~~~---~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 150 AGASALTVHGRTREQRYSGPADWDY----IAEIKEAVSIPVIANGD---------IFSL---EDALRCLEQTGVDGVMIG 213 (231)
T ss_pred hCCCEEEECCCCHHHcCCCCCCHHH----HHHHHhCCCCeEEEeCC---------CCCH---HHHHHHHHhcCCCEEEEc
Confidence 3 6888775432110 112222222 21222345788887542 2233 345556666 89999997
No 215
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=63.49 E-value=1.5e+02 Score=30.72 Aligned_cols=82 Identities=24% Similarity=0.253 Sum_probs=52.2
Q ss_pred CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcC
Q 008172 330 SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESA 409 (575)
Q Consensus 330 sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa 409 (575)
+|.+|.-=...|...|+.+ +..-+.|.+. .+.|||+.- ..-|. +|++.++..|+|++++..=-+
T Consensus 145 ~~~vmPlg~pIGsg~Gi~~-~~~I~~I~e~---~~vpVI~eg---------GI~tp---eda~~AmelGAdgVlV~SAIt 208 (248)
T cd04728 145 CAAVMPLGSPIGSGQGLLN-PYNLRIIIER---ADVPVIVDA---------GIGTP---SDAAQAMELGADAVLLNTAIA 208 (248)
T ss_pred CCEeCCCCcCCCCCCCCCC-HHHHHHHHHh---CCCcEEEeC---------CCCCH---HHHHHHHHcCCCEEEEChHhc
Confidence 4444441122333345544 5555555443 478999743 23333 577999999999999988777
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 008172 410 IGPFGQKAVSVLQMASSR 427 (575)
Q Consensus 410 ~G~yPveaV~~m~~I~~~ 427 (575)
.++.|..-.+.+..-++.
T Consensus 209 ~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 209 KAKDPVAMARAFKLAVEA 226 (248)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 888898877777665543
No 216
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=63.11 E-value=1.9e+02 Score=29.87 Aligned_cols=152 Identities=13% Similarity=0.118 Sum_probs=86.9
Q ss_pred CCCccCH-HHHHHHHHcCCCEEEecC-cCChhhHHHHHHHHhccCCCCceEEee-ecCHHHHhcHHHHHhc-CCEEEEe-
Q 008172 262 TLSKKDW-DDIEFGIAEGVDFIAMSF-VCDADSVRHLKKYVSGKSSRSIKVLAK-IENLESLQKFEEIVEA-SDGIMVA- 336 (575)
Q Consensus 262 ~lsekD~-~di~~al~~gvd~I~~Sf-V~sa~dv~~ir~~l~~~~~~~i~IIaK-IEt~~av~nldeI~~~-sDgImIa- 336 (575)
.+|..++ +.++...+.|+|.|=+.+ -.++++...++.+. ..+ ....+.+- .-+.++++. .++. .|.|.+-
T Consensus 18 ~~s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~-~~~-~~~~v~~~~r~~~~di~~---a~~~g~~~i~i~~ 92 (262)
T cd07948 18 FFDTEDKIEIAKALDAFGVDYIELTSPAASPQSRADCEAIA-KLG-LKAKILTHIRCHMDDARI---AVETGVDGVDLVF 92 (262)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHH-hCC-CCCcEEEEecCCHHHHHH---HHHcCcCEEEEEE
Confidence 3455555 445556679999997744 33444444444433 333 23344433 233343333 3333 5665552
Q ss_pred -CCCC----CCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHH-cccceEEeccCcCC
Q 008172 337 -RGDL----GVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVR-QYADALMLSGESAI 410 (575)
Q Consensus 337 -RGDL----g~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~-~G~D~vmLs~ETa~ 410 (575)
=.|. -.....++.....+++++.++.+|..|.+.-. ..-+-+...+.+++..+. .|+|.+.|. +|.=
T Consensus 93 ~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e------da~r~~~~~l~~~~~~~~~~g~~~i~l~-Dt~G 165 (262)
T cd07948 93 GTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE------DSFRSDLVDLLRVYRAVDKLGVNRVGIA-DTVG 165 (262)
T ss_pred ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE------eeCCCCHHHHHHHHHHHHHcCCCEEEEC-CcCC
Confidence 0110 00122355566667889999999988876421 111222555666666544 499999997 8888
Q ss_pred CCCHHHHHHHHHHHH
Q 008172 411 GPFGQKAVSVLQMAS 425 (575)
Q Consensus 411 G~yPveaV~~m~~I~ 425 (575)
..+|.+.-++++.+-
T Consensus 166 ~~~P~~v~~~~~~~~ 180 (262)
T cd07948 166 IATPRQVYELVRTLR 180 (262)
T ss_pred CCCHHHHHHHHHHHH
Confidence 889998877777663
No 217
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=62.96 E-value=14 Score=39.66 Aligned_cols=49 Identities=10% Similarity=0.262 Sum_probs=42.5
Q ss_pred eEEEecCCCCCCHHHHHHHHHc--CCcEEEeeCCCCCHHHHHHHHHHHHHH
Q 008172 92 KMVCTIGPACCSMEDLEKLAMG--GMNVARLNMCHNTREWHLDVIRKIKQL 140 (575)
Q Consensus 92 kIi~TiGPas~~~e~l~~li~~--G~~v~RlN~SHg~~e~~~~~i~~ir~~ 140 (575)
.+...+|-...+.|.+++|+++ |+|+.=++-+||..+...++++.||+.
T Consensus 98 ~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~ 148 (346)
T PRK05096 98 HVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREA 148 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHh
Confidence 3445789888899999999995 999999999999999888888888863
No 218
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=62.61 E-value=83 Score=35.97 Aligned_cols=161 Identities=14% Similarity=0.127 Sum_probs=99.2
Q ss_pred CCCccCHHHHHHH-HHcCCCEEEecC-cCChhhHHHHHHHHhccCCCCceEEeee-cCHHHH-----hcHHHHHhc-CCE
Q 008172 262 TLSKKDWDDIEFG-IAEGVDFIAMSF-VCDADSVRHLKKYVSGKSSRSIKVLAKI-ENLESL-----QKFEEIVEA-SDG 332 (575)
Q Consensus 262 ~lsekD~~di~~a-l~~gvd~I~~Sf-V~sa~dv~~ir~~l~~~~~~~i~IIaKI-Et~~av-----~nldeI~~~-sDg 332 (575)
.+|..++..|-.. .+.|+|.|=+.| .-|+.|...++.+.+. +.++..|.+-. -..+.+ ..++..+.. .+.
T Consensus 19 ~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~-~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~~~~~ 97 (526)
T TIGR00977 19 SFSLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKEM-NFKNAKIVAFCSTRRPHKKVEEDKMLQALIKAETPV 97 (526)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHh-CCCCcEEEEEeeecCCCCCCchHHHHHHHhcCCCCE
Confidence 4566776655554 579999997754 3468888888887643 22345555544 111211 124444444 455
Q ss_pred EEEe--CCCCCCC----CCCCChHHHHHHHHHHHHHcCCCEEE-ehhhHHhhhcCCCCChhhHhhHHHH-HHcccceEEe
Q 008172 333 IMVA--RGDLGVD----IPLEQIPTVQEIIIHVCRQLNKPVIV-ASQLLESMVEYPTPTRAEVADVSEA-VRQYADALML 404 (575)
Q Consensus 333 ImIa--RGDLg~e----~~~e~v~~~Qk~Ii~~c~~~gKPviv-aTq~LeSM~~~p~PtrAEv~Dv~na-v~~G~D~vmL 404 (575)
|.+- --|+-++ ...+++...-...++.++.+|..|.+ +++..+. -+-+...+.+++.+ ...|+|.+.|
T Consensus 98 v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~----~r~~~~~l~~~~~~a~~aGad~i~i 173 (526)
T TIGR00977 98 VTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDG----YKANPEYALATLATAQQAGADWLVL 173 (526)
T ss_pred EEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeec----ccCCHHHHHHHHHHHHhCCCCeEEE
Confidence 4442 2222211 22355666667888999999998854 4444322 12344556666664 5569999999
Q ss_pred ccCcCCCCCHHHHHHHHHHHHHHH
Q 008172 405 SGESAIGPFGQKAVSVLQMASSRM 428 (575)
Q Consensus 405 s~ETa~G~yPveaV~~m~~I~~~a 428 (575)
. +|.=+..|.+.-++++.+.+..
T Consensus 174 ~-DTvG~~~P~~v~~li~~l~~~~ 196 (526)
T TIGR00977 174 C-DTNGGTLPHEISEITTKVKRSL 196 (526)
T ss_pred e-cCCCCcCHHHHHHHHHHHHHhC
Confidence 8 9999999999988888886553
No 219
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=62.52 E-value=1.1e+02 Score=30.93 Aligned_cols=130 Identities=8% Similarity=0.094 Sum_probs=75.2
Q ss_pred cCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHH-------HhcH----HHHHhcCCEEE
Q 008172 266 KDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLES-------LQKF----EEIVEASDGIM 334 (575)
Q Consensus 266 kD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~a-------v~nl----deI~~~sDgIm 334 (575)
++.++++..++.|++.|++... ...+ .-+++.+...+ + -.++.-|....+ ..++ +.+-+.++.++
T Consensus 88 r~~edv~~~l~~Ga~~viigt~-~~~~-~~~~~~~~~~~-~-~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 163 (233)
T cd04723 88 RSLENAQEWLKRGASRVIVGTE-TLPS-DDDEDRLAALG-E-QRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEELI 163 (233)
T ss_pred CCHHHHHHHHHcCCCeEEEcce-eccc-hHHHHHHHhcC-C-CCeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCeEE
Confidence 4588999999999999888653 2334 45555555544 2 146666655443 1123 33333367777
Q ss_pred EeCCCCCCCCCC--CChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCC
Q 008172 335 VARGDLGVDIPL--EQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGP 412 (575)
Q Consensus 335 IaRGDLg~e~~~--e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~ 412 (575)
+. |+..+-.. .++.. +-+.++....|++++.-+ -+. .|+..+...|+|++.+..=--.|+
T Consensus 164 ~~--di~~~G~~~g~~~~~----~~~i~~~~~ipvi~~GGi---------~s~---edi~~l~~~G~~~vivGsal~~g~ 225 (233)
T cd04723 164 VL--DIDRVGSGQGPDLEL----LERLAARADIPVIAAGGV---------RSV---EDLELLKKLGASGALVASALHDGG 225 (233)
T ss_pred EE--EcCccccCCCcCHHH----HHHHHHhcCCCEEEeCCC---------CCH---HHHHHHHHcCCCEEEEehHHHcCC
Confidence 74 44332211 22222 223344568999997643 334 455555667999999975555566
Q ss_pred CHHHH
Q 008172 413 FGQKA 417 (575)
Q Consensus 413 yPvea 417 (575)
++.+.
T Consensus 226 ~~~~~ 230 (233)
T cd04723 226 LTLED 230 (233)
T ss_pred CCHHH
Confidence 66543
No 220
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=62.49 E-value=1.2e+02 Score=30.16 Aligned_cols=122 Identities=15% Similarity=0.190 Sum_probs=61.2
Q ss_pred cCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCH---------------------HHHhcHH
Q 008172 266 KDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENL---------------------ESLQKFE 324 (575)
Q Consensus 266 kD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~---------------------~av~nld 324 (575)
.+.++++..++.|+++|.+.-- ..++...++++.+..+ .+ .|+.-+... +.++-..
T Consensus 84 ~~~~d~~~~~~~G~~~vilg~~-~l~~~~~~~~~~~~~~-~~-~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (232)
T TIGR03572 84 RSLEDAKKLLSLGADKVSINTA-ALENPDLIEEAARRFG-SQ-CVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAR 160 (232)
T ss_pred CCHHHHHHHHHcCCCEEEEChh-HhcCHHHHHHHHHHcC-Cc-eEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHH
Confidence 3566777788889999887621 2233334444443332 22 133333211 1233333
Q ss_pred HHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEE
Q 008172 325 EIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALM 403 (575)
Q Consensus 325 eI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vm 403 (575)
...+. +|.+.+. +...+-..+.. -.+.+-+.+...+.|++.+..+ -+..++.++ .-..|+|+++
T Consensus 161 ~~~~~G~d~i~i~--~i~~~g~~~g~--~~~~~~~i~~~~~ipvia~GGi---------~s~~di~~~--l~~~gadgV~ 225 (232)
T TIGR03572 161 EAEQLGAGEILLN--SIDRDGTMKGY--DLELIKTVSDAVSIPVIALGGA---------GSLDDLVEV--ALEAGASAVA 225 (232)
T ss_pred HHHHcCCCEEEEe--CCCccCCcCCC--CHHHHHHHHhhCCCCEEEECCC---------CCHHHHHHH--HHHcCCCEEE
Confidence 33333 7888885 22221111111 0222333344568999987654 244444431 3346999999
Q ss_pred ec
Q 008172 404 LS 405 (575)
Q Consensus 404 Ls 405 (575)
++
T Consensus 226 vg 227 (232)
T TIGR03572 226 AA 227 (232)
T ss_pred Ee
Confidence 96
No 221
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=62.45 E-value=68 Score=34.10 Aligned_cols=118 Identities=19% Similarity=0.264 Sum_probs=63.2
Q ss_pred CCCEEEecC----c------CChhhHHHHHHHHhccC---CCCceEEeeecCHHHHhcHHHHHhc-----CCEEEE-eCC
Q 008172 278 GVDFIAMSF----V------CDADSVRHLKKYVSGKS---SRSIKVLAKIENLESLQKFEEIVEA-----SDGIMV-ARG 338 (575)
Q Consensus 278 gvd~I~~Sf----V------~sa~dv~~ir~~l~~~~---~~~i~IIaKIEt~~av~nldeI~~~-----sDgImI-aRG 338 (575)
.+|+|-+.| + +.++.+.++-+.+.+.- .+++.|++|+---...+++.++++. +|+|-+ +|-
T Consensus 160 ~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~ 239 (327)
T cd04738 160 YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTT 239 (327)
T ss_pred hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 489987755 1 22345555544443221 1347899999422222244444433 799875 320
Q ss_pred ----C-----CCCC---C-CCCChHHHHHHHHHHHHHc--CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEE
Q 008172 339 ----D-----LGVD---I-PLEQIPTVQEIIIHVCRQL--NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALM 403 (575)
Q Consensus 339 ----D-----Lg~e---~-~~e~v~~~Qk~Ii~~c~~~--gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vm 403 (575)
+ +... + +...-+...+.+-+..... ..|++.+.-+- ...|+..++..|||+||
T Consensus 240 ~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~------------t~~da~e~l~aGAd~V~ 307 (327)
T cd04738 240 ISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGIS------------SGEDAYEKIRAGASLVQ 307 (327)
T ss_pred ccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCC------------CHHHHHHHHHcCCCHHh
Confidence 0 1000 1 1222334445444444444 57998765443 34567888889999999
Q ss_pred eccC
Q 008172 404 LSGE 407 (575)
Q Consensus 404 Ls~E 407 (575)
+...
T Consensus 308 vg~~ 311 (327)
T cd04738 308 LYTG 311 (327)
T ss_pred ccHH
Confidence 9743
No 222
>PRK00208 thiG thiazole synthase; Reviewed
Probab=62.26 E-value=1.6e+02 Score=30.52 Aligned_cols=68 Identities=26% Similarity=0.292 Sum_probs=46.8
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHH
Q 008172 344 IPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQM 423 (575)
Q Consensus 344 ~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~ 423 (575)
.|+.+ +...+.+.+. .+.|||+.- ..-|. +|++.++..|+|++++..=-+..+.|..-.+.+..
T Consensus 159 ~gi~~-~~~i~~i~e~---~~vpVIvea---------GI~tp---eda~~AmelGAdgVlV~SAItka~dP~~ma~af~~ 222 (250)
T PRK00208 159 LGLLN-PYNLRIIIEQ---ADVPVIVDA---------GIGTP---SDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKL 222 (250)
T ss_pred CCCCC-HHHHHHHHHh---cCCeEEEeC---------CCCCH---HHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHH
Confidence 34444 5555555443 478999843 23333 57799999999999998877788889887777666
Q ss_pred HHHH
Q 008172 424 ASSR 427 (575)
Q Consensus 424 I~~~ 427 (575)
-++.
T Consensus 223 Av~a 226 (250)
T PRK00208 223 AVEA 226 (250)
T ss_pred HHHH
Confidence 5543
No 223
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=62.24 E-value=1.1e+02 Score=31.97 Aligned_cols=98 Identities=15% Similarity=0.133 Sum_probs=58.7
Q ss_pred HHHHHHHHHcC-CCEEEec------CcCChhhHHHHHHH-HhccCCCCceEEeeec---CHHHHhcHHHHHhc-CCEEEE
Q 008172 268 WDDIEFGIAEG-VDFIAMS------FVCDADSVRHLKKY-VSGKSSRSIKVLAKIE---NLESLQKFEEIVEA-SDGIMV 335 (575)
Q Consensus 268 ~~di~~al~~g-vd~I~~S------fV~sa~dv~~ir~~-l~~~~~~~i~IIaKIE---t~~av~nldeI~~~-sDgImI 335 (575)
.+.+++.++.| +|+|++. +-=|.++-.++-+. .+..+ .++.||+.+- +.++++.....-+. +||+|+
T Consensus 24 ~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~-~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v 102 (290)
T TIGR00683 24 RQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK-DQIALIAQVGSVNLKEAVELGKYATELGYDCLSA 102 (290)
T ss_pred HHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhC-CCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 46678889999 9999776 44566666665543 33333 4578899884 44555555554444 899999
Q ss_pred eCCCCCCCCCCCChHHHHHHHHHHHHHc-CCCEEEe
Q 008172 336 ARGDLGVDIPLEQIPTVQEIIIHVCRQL-NKPVIVA 370 (575)
Q Consensus 336 aRGDLg~e~~~e~v~~~Qk~Ii~~c~~~-gKPviva 370 (575)
.+-..-- ...+.+...-+.+. .+. +.|+++-
T Consensus 103 ~~P~y~~-~~~~~i~~yf~~v~---~~~~~lpv~lY 134 (290)
T TIGR00683 103 VTPFYYK-FSFPEIKHYYDTII---AETGGLNMIVY 134 (290)
T ss_pred eCCcCCC-CCHHHHHHHHHHHH---hhCCCCCEEEE
Confidence 7543311 11233333334443 334 6788764
No 224
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=62.23 E-value=89 Score=32.90 Aligned_cols=101 Identities=18% Similarity=0.265 Sum_probs=64.8
Q ss_pred CceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCE-EEehhhH---Hhhhc--
Q 008172 307 SIKVLAKIENLESLQKFEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPV-IVASQLL---ESMVE-- 379 (575)
Q Consensus 307 ~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPv-ivaTq~L---eSM~~-- 379 (575)
++.|...+.+-.-++.+.+-++. .+.+|+. |-++|+++=...-+++++.|+.+|.+| .=-.++- +....
T Consensus 74 ~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~D----gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~ 149 (283)
T PRK07998 74 DVPVSLHLDHGKTFEDVKQAVRAGFTSVMID----GAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEA 149 (283)
T ss_pred CCCEEEECcCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccc
Confidence 46677777766545455444444 7999995 345688776777899999999999998 1111110 00000
Q ss_pred CCCCChhhHhhHHHHH-HcccceEEeccCcCCCCCH
Q 008172 380 YPTPTRAEVADVSEAV-RQYADALMLSGESAIGPFG 414 (575)
Q Consensus 380 ~p~PtrAEv~Dv~nav-~~G~D~vmLs~ETa~G~yP 414 (575)
...-+..|+ ..++ .-|+|++-.+--|+-|.|+
T Consensus 150 ~~~T~pe~a---~~Fv~~TgvD~LAvaiGt~HG~Y~ 182 (283)
T PRK07998 150 DCKTEPEKV---KDFVERTGCDMLAVSIGNVHGLED 182 (283)
T ss_pred cccCCHHHH---HHHHHHhCcCeeehhccccccCCC
Confidence 112233333 4444 4699999999999999994
No 225
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=61.77 E-value=69 Score=35.58 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=25.2
Q ss_pred CCEEEEeCCCCCCCCCCCChHHH-HHHHHHHHHHcCCCEEEe
Q 008172 330 SDGIMVARGDLGVDIPLEQIPTV-QEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 330 sDgImIaRGDLg~e~~~e~v~~~-Qk~Ii~~c~~~gKPviva 370 (575)
.|.|+|+||-=+ .|++... .+.++++..+...|||.|
T Consensus 188 ~dviii~RGGGs----~eDL~~Fn~e~~~rai~~~~~Pvis~ 225 (432)
T TIGR00237 188 CDVLIVGRGGGS----LEDLWSFNDEKVARAIFLSKIPIISA 225 (432)
T ss_pred CCEEEEecCCCC----HHHhhhcCcHHHHHHHHcCCCCEEEe
Confidence 599999999421 1222222 245677778889999987
No 226
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=61.54 E-value=1.1e+02 Score=33.76 Aligned_cols=121 Identities=12% Similarity=0.151 Sum_probs=69.7
Q ss_pred CCCccC-HHHHHHHHHcCCCEEEecCcC-ChhhHHHHHHHHhccCCCCceEEee--ecCHHHHhcHHHHHhc-CCEEEE-
Q 008172 262 TLSKKD-WDDIEFGIAEGVDFIAMSFVC-DADSVRHLKKYVSGKSSRSIKVLAK--IENLESLQKFEEIVEA-SDGIMV- 335 (575)
Q Consensus 262 ~lsekD-~~di~~al~~gvd~I~~SfV~-sa~dv~~ir~~l~~~~~~~i~IIaK--IEt~~av~nldeI~~~-sDgImI- 335 (575)
.++..+ .+.++.+++.|+++|=..+-. +.+..+.++++.+..+ ...++.- +=.. +-..++..++. +|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~~~--~~~ii~D~kl~d~-g~~~v~~a~~aGAdgV~v~ 88 (430)
T PRK07028 12 LLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNFP--DHTIVADMKTMDT-GAIEVEMAAKAGADIVCIL 88 (430)
T ss_pred cCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHHCC--CCEEEEEeeeccc-hHHHHHHHHHcCCCEEEEe
Confidence 333344 455566688999999664322 2445556666554432 3345533 2221 23366666666 899997
Q ss_pred eCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 336 ARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 336 aRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
+-.| . ..-+++++.|+++|.++++.. + ..+|.. ..+..+...|+|.+.+.
T Consensus 89 g~~~--------~--~~~~~~i~~a~~~G~~~~~g~--~------s~~t~~--e~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 89 GLAD--------D--STIEDAVRAARKYGVRLMADL--I------NVPDPV--KRAVELEELGVDYINVH 138 (430)
T ss_pred cCCC--------h--HHHHHHHHHHHHcCCEEEEEe--c------CCCCHH--HHHHHHHhcCCCEEEEE
Confidence 3111 1 113678899999999998720 0 122322 23456677899999765
No 227
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=61.51 E-value=18 Score=36.94 Aligned_cols=66 Identities=21% Similarity=0.374 Sum_probs=45.4
Q ss_pred HHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeec---CHHHHhcHHHHHhc-CCEEEEeCCCC
Q 008172 271 IEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIE---NLESLQKFEEIVEA-SDGIMVARGDL 340 (575)
Q Consensus 271 i~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIE---t~~av~nldeI~~~-sDgImIaRGDL 340 (575)
.+.+.+.|+|||..||.. +++.++++..... -.+..+.-|= -.++++|++++++. +||+-++|.=+
T Consensus 162 ~~~a~~~GADyikt~~~~---~~~~l~~~~~~~~-iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~ 231 (258)
T TIGR01949 162 ARLGAELGADIVKTPYTG---DIDSFRDVVKGCP-APVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIF 231 (258)
T ss_pred HHHHHHHCCCEEeccCCC---CHHHHHHHHHhCC-CcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhh
Confidence 366788999999999864 4555555554222 2244444553 25678899999999 99999987655
No 228
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=61.43 E-value=28 Score=31.63 Aligned_cols=69 Identities=17% Similarity=0.282 Sum_probs=49.3
Q ss_pred hhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 291 DSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 291 ~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
..+..+++.+.+.+ ..+.+.+--+.. .-++++++++-.|.|+.+-++ ......+-+.|+++++|+|.+
T Consensus 56 ~Ka~~~~~~l~~~n-p~~~v~~~~~~~-~~~~~~~~~~~~d~vi~~~d~----------~~~~~~l~~~~~~~~~p~i~~ 123 (135)
T PF00899_consen 56 NKAEAAKERLQEIN-PDVEVEAIPEKI-DEENIEELLKDYDIVIDCVDS----------LAARLLLNEICREYGIPFIDA 123 (135)
T ss_dssp BHHHHHHHHHHHHS-TTSEEEEEESHC-SHHHHHHHHHTSSEEEEESSS----------HHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHHHhc-Cceeeeeeeccc-ccccccccccCCCEEEEecCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 45666777777765 566666644433 457888988889999887444 466778889999999999976
Q ss_pred h
Q 008172 371 S 371 (575)
Q Consensus 371 T 371 (575)
.
T Consensus 124 ~ 124 (135)
T PF00899_consen 124 G 124 (135)
T ss_dssp E
T ss_pred E
Confidence 3
No 229
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=61.38 E-value=2.3e+02 Score=30.34 Aligned_cols=145 Identities=17% Similarity=0.183 Sum_probs=87.9
Q ss_pred CCCccCHHHHHHHH-HcCCCEEEe---------cCcC---ChhhHHHHHHHHhccCCCCceEEeee----cCHHHHhcHH
Q 008172 262 TLSKKDWDDIEFGI-AEGVDFIAM---------SFVC---DADSVRHLKKYVSGKSSRSIKVLAKI----ENLESLQKFE 324 (575)
Q Consensus 262 ~lsekD~~di~~al-~~gvd~I~~---------SfV~---sa~dv~~ir~~l~~~~~~~i~IIaKI----Et~~av~nld 324 (575)
.+|..++..|-.++ +.|+|.|=+ ||.. ...+.+.++...... ++.++.+.+ -+. +.++
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~--~~~~~~~ll~pg~~~~---~dl~ 94 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVV--KRAKVAVLLLPGIGTV---HDLK 94 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhC--CCCEEEEEeccCccCH---HHHH
Confidence 46777777776665 589999877 3432 112344444444332 234444333 232 2334
Q ss_pred HHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHH-HHcccceE
Q 008172 325 EIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEA-VRQYADAL 402 (575)
Q Consensus 325 eI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~na-v~~G~D~v 402 (575)
.-.+. .|.|-|+ ....+.. .-++.++.+++.|.-+.+. +..+ ..-+..++.+.+.. ...|+|++
T Consensus 95 ~a~~~gvd~iri~-------~~~~e~d-~~~~~i~~ak~~G~~v~~~--l~~s----~~~~~e~l~~~a~~~~~~Ga~~i 160 (333)
T TIGR03217 95 AAYDAGARTVRVA-------THCTEAD-VSEQHIGMARELGMDTVGF--LMMS----HMTPPEKLAEQAKLMESYGADCV 160 (333)
T ss_pred HHHHCCCCEEEEE-------eccchHH-HHHHHHHHHHHcCCeEEEE--EEcc----cCCCHHHHHHHHHHHHhcCCCEE
Confidence 43343 7888875 2223333 3578899999999887753 2222 23456677777765 45699999
Q ss_pred EeccCcCCCCCHHHHHHHHHHHHH
Q 008172 403 MLSGESAIGPFGQKAVSVLQMASS 426 (575)
Q Consensus 403 mLs~ETa~G~yPveaV~~m~~I~~ 426 (575)
.+. +|+=..+|.+.-+....+.+
T Consensus 161 ~i~-DT~G~~~P~~v~~~v~~l~~ 183 (333)
T TIGR03217 161 YIV-DSAGAMLPDDVRDRVRALKA 183 (333)
T ss_pred EEc-cCCCCCCHHHHHHHHHHHHH
Confidence 998 88888999888776666543
No 230
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=60.95 E-value=30 Score=35.81 Aligned_cols=84 Identities=17% Similarity=0.302 Sum_probs=51.6
Q ss_pred CCccCHHHH-HHH-HHcCCCEEEecCcCC-----hhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEE
Q 008172 263 LSKKDWDDI-EFG-IAEGVDFIAMSFVCD-----ADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMV 335 (575)
Q Consensus 263 lsekD~~di-~~a-l~~gvd~I~~SfV~s-----a~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImI 335 (575)
|.+.+.+.. +.+ -..++|.|++|=-.+ .++++++|+.+. +.|+ +=+=--.+|+.++++.+||.+|
T Consensus 155 l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~------~PVl--vGSGvt~~Ni~~~l~~ADG~IV 226 (254)
T PF03437_consen 155 LATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVP------VPVL--VGSGVTPENIAEYLSYADGAIV 226 (254)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCC------CCEE--EecCCCHHHHHHHHHhCCEEEE
Confidence 445555444 344 357999999998875 444455555442 3343 2233345799999999999999
Q ss_pred eC-----CCCCCCCCCCChHHHHH
Q 008172 336 AR-----GDLGVDIPLEQIPTVQE 354 (575)
Q Consensus 336 aR-----GDLg~e~~~e~v~~~Qk 354 (575)
|- |+..-.+..+++-..++
T Consensus 227 GS~~K~~G~~~n~VD~~Rv~~fm~ 250 (254)
T PF03437_consen 227 GSYFKKDGKWENPVDPERVRRFME 250 (254)
T ss_pred eeeeeeCCEeCCcCCHHHHHHHHH
Confidence 84 34444454455544443
No 231
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=60.72 E-value=79 Score=33.31 Aligned_cols=99 Identities=20% Similarity=0.226 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCCEEEec------CcCChhhHHHHHHHHhccCCCCceEEeee---cCHHHHhcHHHHHhc-CCEEEEeC
Q 008172 268 WDDIEFGIAEGVDFIAMS------FVCDADSVRHLKKYVSGKSSRSIKVLAKI---ENLESLQKFEEIVEA-SDGIMVAR 337 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~S------fV~sa~dv~~ir~~l~~~~~~~i~IIaKI---Et~~av~nldeI~~~-sDgImIaR 337 (575)
.+.++|.++.|+|+|++. +--|.++=.++-+...+..+..+.+|+-+ =+.++++....--+. +||+|+-+
T Consensus 28 ~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~ 107 (299)
T COG0329 28 RRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVP 107 (299)
T ss_pred HHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeC
Confidence 355678999999998763 44455665555444433322567788877 345666555555555 89999964
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 338 GDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 338 GDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
-..- ..+.+.+...-+.|++ +.+-|+|+-
T Consensus 108 PyY~-k~~~~gl~~hf~~ia~---a~~lPvilY 136 (299)
T COG0329 108 PYYN-KPSQEGLYAHFKAIAE---AVDLPVILY 136 (299)
T ss_pred CCCc-CCChHHHHHHHHHHHH---hcCCCEEEE
Confidence 3321 1112444444455544 448999874
No 232
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=60.56 E-value=1.5e+02 Score=28.51 Aligned_cols=131 Identities=14% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCCCCC
Q 008172 269 DDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARGDLGVDIPLE 347 (575)
Q Consensus 269 ~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGDLg~e~~~e 347 (575)
.+++.+.+.|+|+|-++ ...-+...+|..+ .....|-+-.-+. +.+.+..+. +|.+++++=-=+..=+..
T Consensus 64 ~~~~la~~~g~~GvHl~--~~~~~~~~~r~~~----~~~~~ig~s~h~~---~e~~~a~~~g~dyi~~~~v~~t~~k~~~ 134 (196)
T TIGR00693 64 DRVDLALALGADGVHLG--QDDLPASEARALL----GPDKIIGVSTHNL---EELAEAEAEGADYIGFGPIFPTPTKKDP 134 (196)
T ss_pred CHHHHHHHcCCCEEecC--cccCCHHHHHHhc----CCCCEEEEeCCCH---HHHHHHhHcCCCEEEECCccCCCCCCCC
Q ss_pred ChHHHHHHHHHHHHHcC-CCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHH
Q 008172 348 QIPTVQEIIIHVCRQLN-KPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVL 421 (575)
Q Consensus 348 ~v~~~Qk~Ii~~c~~~g-KPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m 421 (575)
.-+.--+.+-+.+.... .|++....+=. .++..+...|+|++.+.+.-..-+.|.++++.|
T Consensus 135 ~~~~g~~~l~~~~~~~~~~pv~a~GGI~~-------------~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~l 196 (196)
T TIGR00693 135 APPAGVELLREIAATSIDIPIVAIGGITL-------------ENAAEVLAAGADGVAVVSAIMQAADPKAAAKQL 196 (196)
T ss_pred CCCCCHHHHHHHHHhcCCCCEEEECCcCH-------------HHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHhC
No 233
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=60.51 E-value=42 Score=36.31 Aligned_cols=80 Identities=16% Similarity=0.214 Sum_probs=54.9
Q ss_pred HhcHHHHHhc-CCEEEEeCCCCCCCCCCCCh-HHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhh--HhhHHHHH
Q 008172 320 LQKFEEIVEA-SDGIMVARGDLGVDIPLEQI-PTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAE--VADVSEAV 395 (575)
Q Consensus 320 v~nldeI~~~-sDgImIaRGDLg~e~~~e~v-~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAE--v~Dv~nav 395 (575)
++.+...++. +|.|.+|=-+++.--..... ..-.+++++.|+++||-+.++.+++ +.+...| ...+..++
T Consensus 16 l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~------~~~~~~~~~~~~l~~l~ 89 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTL------LHNDELETLERYLDRLV 89 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccc------cccchhhHHHHHHHHHH
Confidence 3444444444 89999994466665554111 1225688999999999999987766 2333333 35667788
Q ss_pred HcccceEEec
Q 008172 396 RQYADALMLS 405 (575)
Q Consensus 396 ~~G~D~vmLs 405 (575)
..|+|+|.++
T Consensus 90 e~GvDaviv~ 99 (347)
T COG0826 90 ELGVDAVIVA 99 (347)
T ss_pred HcCCCEEEEc
Confidence 9999999997
No 234
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=60.10 E-value=1e+02 Score=31.98 Aligned_cols=98 Identities=16% Similarity=0.236 Sum_probs=59.4
Q ss_pred HHHHHHHHH-cCCCEEEec------CcCChhhHHHHHH-HHhccCCCCceEEeeec---CHHHHhcHHHHHhc-CCEEEE
Q 008172 268 WDDIEFGIA-EGVDFIAMS------FVCDADSVRHLKK-YVSGKSSRSIKVLAKIE---NLESLQKFEEIVEA-SDGIMV 335 (575)
Q Consensus 268 ~~di~~al~-~gvd~I~~S------fV~sa~dv~~ir~-~l~~~~~~~i~IIaKIE---t~~av~nldeI~~~-sDgImI 335 (575)
.+.+++.++ .|+++|++. +.=|.++-.++-+ .++..+ .++.||+.+- +.++++.....-+. +|++|+
T Consensus 27 ~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~-~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v 105 (293)
T PRK04147 27 RRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAK-GKVKLIAQVGSVNTAEAQELAKYATELGYDAISA 105 (293)
T ss_pred HHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhC-CCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 456678999 999998764 2233444444433 333333 4688999984 56666666666565 899999
Q ss_pred eCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 336 ARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 336 aRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
.+...-- ...+.+... .-+.|.+.+.|+++-
T Consensus 106 ~~P~y~~-~~~~~l~~~---f~~va~a~~lPv~iY 136 (293)
T PRK04147 106 VTPFYYP-FSFEEICDY---YREIIDSADNPMIVY 136 (293)
T ss_pred eCCcCCC-CCHHHHHHH---HHHHHHhCCCCEEEE
Confidence 8655411 111333333 333455567899875
No 235
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=59.92 E-value=1.7e+02 Score=30.32 Aligned_cols=158 Identities=14% Similarity=0.111 Sum_probs=88.9
Q ss_pred CCCccCHHHH-HHHHHcCCCEEEec-CcCCh-----hhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEE
Q 008172 262 TLSKKDWDDI-EFGIAEGVDFIAMS-FVCDA-----DSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGI 333 (575)
Q Consensus 262 ~lsekD~~di-~~al~~gvd~I~~S-fV~sa-----~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgI 333 (575)
.+|.+++..| +...+.|+|.|=+. |+... .|..++.+.+... ...++.+-.-+.+++ +..++. .|.|
T Consensus 16 ~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~--~~~~~~~~~~~~~dv---~~A~~~g~~~i 90 (274)
T cd07938 16 FIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRR--PGVRYSALVPNLRGA---ERALAAGVDEV 90 (274)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccC--CCCEEEEECCCHHHH---HHHHHcCcCEE
Confidence 4555555444 45567999999775 43322 3555566655443 235555554444444 334443 5554
Q ss_pred EEe--CCCC----CCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHcccceEEecc
Q 008172 334 MVA--RGDL----GVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQYADALMLSG 406 (575)
Q Consensus 334 mIa--RGDL----g~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~G~D~vmLs~ 406 (575)
-+- -.|+ -+....+.....-++.++.++++|+-+.+.-.+--+....++-+...+.+++. +...|+|.+-|.
T Consensus 91 ~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~- 169 (274)
T cd07938 91 AVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEISLG- 169 (274)
T ss_pred EEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEEC-
Confidence 432 2221 01111234445556788999999998864321110111111224455666666 567899999998
Q ss_pred CcCCCCCHHHHHHHHHHHH
Q 008172 407 ESAIGPFGQKAVSVLQMAS 425 (575)
Q Consensus 407 ETa~G~yPveaV~~m~~I~ 425 (575)
+|.=.-.|.+.-++...+.
T Consensus 170 DT~G~~~P~~v~~lv~~l~ 188 (274)
T cd07938 170 DTIGVATPAQVRRLLEAVL 188 (274)
T ss_pred CCCCccCHHHHHHHHHHHH
Confidence 7887788988877777664
No 236
>PRK07695 transcriptional regulator TenI; Provisional
Probab=59.66 E-value=27 Score=34.18 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=43.7
Q ss_pred cCHHHHHHHHHcCCCEEEecCcCC--------hhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEe
Q 008172 266 KDWDDIEFGIAEGVDFIAMSFVCD--------ADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVA 336 (575)
Q Consensus 266 kD~~di~~al~~gvd~I~~SfV~s--------a~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIa 336 (575)
.+.+.+..+.+.|+|||+++.+.. +.....+++.....+ -.+..+.-| ++ +|+.++++. +||+.++
T Consensus 103 ~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~-ipvia~GGI-~~---~~~~~~~~~Ga~gvav~ 177 (201)
T PRK07695 103 HSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALS-IPVIAIGGI-TP---ENTRDVLAAGVSGIAVM 177 (201)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCC-CCEEEEcCC-CH---HHHHHHHHcCCCEEEEE
Confidence 345667788899999999875421 223445555443322 234444456 43 567777777 8999998
Q ss_pred CCCC
Q 008172 337 RGDL 340 (575)
Q Consensus 337 RGDL 340 (575)
++=.
T Consensus 178 s~i~ 181 (201)
T PRK07695 178 SGIF 181 (201)
T ss_pred HHHh
Confidence 6644
No 237
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=59.50 E-value=2e+02 Score=28.97 Aligned_cols=140 Identities=11% Similarity=0.140 Sum_probs=74.4
Q ss_pred HHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHH---------HHH-------hc--
Q 008172 268 WDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFE---------EIV-------EA-- 329 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nld---------eI~-------~~-- 329 (575)
...++...+.|+|++.+-..-..+-++++.+...+.+...+..+..+.+..+ +++. +.+ ..
T Consensus 70 ~~~i~~~~~~gad~itvH~~ag~~~i~~~~~~~~~~~~~~~~~V~~lts~~~-~~l~~~~~~~~~~~~v~~~a~~a~~~g 148 (230)
T PRK00230 70 AKAVRALAKLGVDMVNVHASGGPRMMKAAREALEPKSRPLLIAVTVLTSMDE-EDLAELGINLSLEEQVLRLAKLAQEAG 148 (230)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHHHHHHHhhccCCCeEEEEEECCCCCH-HHHHhCcCCCCHHHHHHHHHHHHHHcC
Confidence 3456667799999999998777777787777765322123444455655422 3332 111 11
Q ss_pred CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcC
Q 008172 330 SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESA 409 (575)
Q Consensus 330 sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa 409 (575)
+||+... ...+..+.+. +. .....+ |.=.- ..-.+.-....+..+..|+..|+|.++...--.
T Consensus 149 ~dgvv~~---------~~~~~~ir~~----~~--~~~~~v-~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~ 211 (230)
T PRK00230 149 LDGVVCS---------AQEAAAIREA----TG--PDFLLV-TPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPIT 211 (230)
T ss_pred CeEEEeC---------hHHHHHHHhh----cC--CceEEE-cCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEECCccc
Confidence 2333332 1111111111 00 111111 11111 111111122234467889999999999988877
Q ss_pred CCCCHHHHHHHHHHHH
Q 008172 410 IGPFGQKAVSVLQMAS 425 (575)
Q Consensus 410 ~G~yPveaV~~m~~I~ 425 (575)
....|.++++.+.+.+
T Consensus 212 ~a~dP~~~a~~i~~~i 227 (230)
T PRK00230 212 QAADPAAAYEAILAEI 227 (230)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 8888999988776543
No 238
>PLN02826 dihydroorotate dehydrogenase
Probab=59.37 E-value=1.8e+02 Score=32.23 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=52.1
Q ss_pred CceEEeeec---CHHHHhcHHHHHhc--CCEEEEe-----C-CCCC-----CCC----CCCChHHHHHHHHHHHHHc--C
Q 008172 307 SIKVLAKIE---NLESLQKFEEIVEA--SDGIMVA-----R-GDLG-----VDI----PLEQIPTVQEIIIHVCRQL--N 364 (575)
Q Consensus 307 ~i~IIaKIE---t~~av~nldeI~~~--sDgImIa-----R-GDLg-----~e~----~~e~v~~~Qk~Ii~~c~~~--g 364 (575)
.+.|+.||= +.+.+..+-+.+.. +|||.+. | +|+- .+. |.+-.+...+.+-+..++. .
T Consensus 262 ~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ 341 (409)
T PLN02826 262 PPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGK 341 (409)
T ss_pred CCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCC
Confidence 478999993 33334444333333 7999875 3 2231 111 1233344444444444444 4
Q ss_pred CCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 365 KPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 365 KPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
.|+|..+-+. .-.|++..+..||++|.+.
T Consensus 342 ipIIgvGGI~------------sg~Da~e~i~AGAs~VQv~ 370 (409)
T PLN02826 342 IPLVGCGGVS------------SGEDAYKKIRAGASLVQLY 370 (409)
T ss_pred CcEEEECCCC------------CHHHHHHHHHhCCCeeeec
Confidence 6888876655 4578899999999999996
No 239
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=59.27 E-value=1.1e+02 Score=33.65 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHHHHHc-CCCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHcccceEEeccCc
Q 008172 348 QIPTVQEIIIHVCRQL-NKPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQYADALMLSGES 408 (575)
Q Consensus 348 ~v~~~Qk~Ii~~c~~~-gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~G~D~vmLs~ET 408 (575)
.-|..-+++++.+++. .+|+++= -.|.-.++.+++. +...|+|++.|.+=+
T Consensus 165 q~~e~~~~i~~~Vk~~~~iPv~vK----------LsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 165 QDCDLLEEVCGWINAKATVPVWAK----------MTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred cCHHHHHHHHHHHHHhhcCceEEE----------eCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 3477788888888875 7999972 3466667888888 667899999998644
No 240
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=59.20 E-value=13 Score=42.08 Aligned_cols=45 Identities=20% Similarity=0.359 Sum_probs=37.8
Q ss_pred EecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHH
Q 008172 95 CTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQ 139 (575)
Q Consensus 95 ~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~ 139 (575)
+.+|..-.+.+.++.|+++|+++.-++.+||...+..+.++.+|+
T Consensus 234 aavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~ 278 (495)
T PTZ00314 234 AAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKS 278 (495)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHh
Confidence 467776667899999999999999999999988777677777764
No 241
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=59.17 E-value=19 Score=38.72 Aligned_cols=48 Identities=8% Similarity=0.275 Sum_probs=42.4
Q ss_pred eEEEecCCCCCCHHHHHHHHHcC--CcEEEeeCCCCCHHHHHHHHHHHHH
Q 008172 92 KMVCTIGPACCSMEDLEKLAMGG--MNVARLNMCHNTREWHLDVIRKIKQ 139 (575)
Q Consensus 92 kIi~TiGPas~~~e~l~~li~~G--~~v~RlN~SHg~~e~~~~~i~~ir~ 139 (575)
.+...+|-...+.|.+++|+++| .|+.=++-+||..+...+.++.||+
T Consensus 97 ~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~ 146 (343)
T TIGR01305 97 NVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVRE 146 (343)
T ss_pred eEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHh
Confidence 34457898889999999999996 9999999999999998888888885
No 242
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=58.91 E-value=1.3e+02 Score=33.23 Aligned_cols=158 Identities=19% Similarity=0.233 Sum_probs=101.8
Q ss_pred CCCccCHHHHHHHH-HcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCH-HHHh-cHHHHHhc-CCE--EEE
Q 008172 262 TLSKKDWDDIEFGI-AEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENL-ESLQ-KFEEIVEA-SDG--IMV 335 (575)
Q Consensus 262 ~lsekD~~di~~al-~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~-~av~-nldeI~~~-sDg--ImI 335 (575)
.+|-+|+..|...| +.|+|+|=+.|-.+.+...+..+.+.... .. .+-+++-.. ..++ .++.++.. .|. +++
T Consensus 20 ~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~-~~-~~~~~~~~~~~~~~~~~ea~~~a~~~~i~if~ 97 (409)
T COG0119 20 SFSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIAEKA-GL-FICALIAALARAIKRDIEALLEAGVDRIHIFI 97 (409)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhHHHHHHHHHhc-Cc-ccchhhhhhHHhHHhhHHHHHhCCCCEEEEEE
Confidence 56778887777776 58999998888776665555555554221 11 223333221 2233 56666666 666 788
Q ss_pred eCCCCCCCCCC----CChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHH-HcccceEEeccCcCC
Q 008172 336 ARGDLGVDIPL----EQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAV-RQYADALMLSGESAI 410 (575)
Q Consensus 336 aRGDLg~e~~~----e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav-~~G~D~vmLs~ETa~ 410 (575)
+-.|+.++.-+ +.+...-+..++.++.+|.++... +|.+. +-+..-+.+++.++ ..|++.+-|. +|-=
T Consensus 98 ~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~---~Ed~~---rt~~~~l~~~~~~~~~~ga~~i~l~-DTvG 170 (409)
T COG0119 98 ATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFS---AEDAT---RTDPEFLAEVVKAAIEAGADRINLP-DTVG 170 (409)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE---eeccc---cCCHHHHHHHHHHHHHcCCcEEEEC-CCcC
Confidence 88887666544 566666778999999999888752 22221 33333455566644 4559999997 8888
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 008172 411 GPFGQKAVSVLQMASSRM 428 (575)
Q Consensus 411 G~yPveaV~~m~~I~~~a 428 (575)
+-.|-+.-..++.+....
T Consensus 171 ~~~P~~~~~~i~~l~~~v 188 (409)
T COG0119 171 VATPNEVADIIEALKANV 188 (409)
T ss_pred ccCHHHHHHHHHHHHHhC
Confidence 888988877777765544
No 243
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=58.73 E-value=64 Score=33.44 Aligned_cols=98 Identities=17% Similarity=0.167 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCCCEEEecCc------CChhhHHHHH-HHHhccCCCCceEEeeec---CHHHHhcHHHHHhc-CCEEEEe
Q 008172 268 WDDIEFGIAEGVDFIAMSFV------CDADSVRHLK-KYVSGKSSRSIKVLAKIE---NLESLQKFEEIVEA-SDGIMVA 336 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV------~sa~dv~~ir-~~l~~~~~~~i~IIaKIE---t~~av~nldeI~~~-sDgImIa 336 (575)
.+.+++.++.|+++|++.=- =|.++=.++- ...+... .++.|++-+= +.++++.....-+. +|++|+.
T Consensus 25 ~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~-~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~ 103 (292)
T PRK03170 25 RKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVN-GRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVV 103 (292)
T ss_pred HHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhC-CCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEEC
Confidence 35667899999999985421 1333333333 3333332 4577888874 44555555555555 8999997
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 337 RGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 337 RGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
+-.+.. .+.+.+...-+.|++ +.+.|+++-
T Consensus 104 pP~~~~-~~~~~i~~~~~~ia~---~~~~pv~lY 133 (292)
T PRK03170 104 TPYYNK-PTQEGLYQHFKAIAE---ATDLPIILY 133 (292)
T ss_pred CCcCCC-CCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 655421 122444444455544 457899975
No 244
>PLN02417 dihydrodipicolinate synthase
Probab=58.64 E-value=63 Score=33.53 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCCCEEEec------CcCChhhHHHHHH-HHhccCCCCceEEeeec---CHHHHhcHHHHHhc-CCEEEEe
Q 008172 268 WDDIEFGIAEGVDFIAMS------FVCDADSVRHLKK-YVSGKSSRSIKVLAKIE---NLESLQKFEEIVEA-SDGIMVA 336 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~S------fV~sa~dv~~ir~-~l~~~~~~~i~IIaKIE---t~~av~nldeI~~~-sDgImIa 336 (575)
.+.++|.++.|+++|++. +--|.++-.++-+ ..+..+ ..+.||+-+= +.++++....--+. +|++|+.
T Consensus 25 ~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~-~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~ 103 (280)
T PLN02417 25 DSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-GKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 103 (280)
T ss_pred HHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEc
Confidence 356678899999999873 2233444444433 333333 4578888884 45666666655555 8999998
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 337 RGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 337 RGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
+-...- .+.+.+...-+.+.++ . |+++.
T Consensus 104 ~P~y~~-~~~~~i~~~f~~va~~----~-pi~lY 131 (280)
T PLN02417 104 NPYYGK-TSQEGLIKHFETVLDM----G-PTIIY 131 (280)
T ss_pred CCccCC-CCHHHHHHHHHHHHhh----C-CEEEE
Confidence 776532 2234455555555442 3 88864
No 245
>PRK15447 putative protease; Provisional
Probab=58.39 E-value=52 Score=34.65 Aligned_cols=67 Identities=10% Similarity=-0.008 Sum_probs=48.9
Q ss_pred CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 330 SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 330 sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
+|+|.+|=..++.-.++ -..-.+++++.|+++||.+.++|.-+ .....|...+...+..|.|+|+.+
T Consensus 29 aDaVY~g~~~~~~R~~f--~~~~l~e~v~~~~~~gkkvyva~p~i-------~~~~~e~~~l~~~l~~~~~~v~v~ 95 (301)
T PRK15447 29 VDIVYLGETVCSKRREL--KVGDWLELAERLAAAGKEVVLSTLAL-------VEAPSELKELRRLVENGEFLVEAN 95 (301)
T ss_pred CCEEEECCccCCCccCC--CHHHHHHHHHHHHHcCCEEEEEeccc-------ccCHHHHHHHHHHHhcCCCEEEEe
Confidence 89999996666654432 33556788899999999999987433 122457888888888899988753
No 246
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=58.38 E-value=1.2e+02 Score=30.79 Aligned_cols=64 Identities=13% Similarity=0.167 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEE
Q 008172 268 WDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMV 335 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImI 335 (575)
...+..-.+.|+|+|.+= ++....+.++-+++++.| ....+.-+=+|+ ++.++.++...|.|++
T Consensus 74 ~~~i~~fa~agad~It~H-~E~~~~~~r~i~~Ik~~G-~kaGv~lnP~Tp--~~~i~~~l~~vD~Vll 137 (220)
T COG0036 74 DRYIEAFAKAGADIITFH-AEATEHIHRTIQLIKELG-VKAGLVLNPATP--LEALEPVLDDVDLVLL 137 (220)
T ss_pred HHHHHHHHHhCCCEEEEE-eccCcCHHHHHHHHHHcC-CeEEEEECCCCC--HHHHHHHHhhCCEEEE
Confidence 456677789999999764 567789999999999887 567888888885 7889999999999998
No 247
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=58.14 E-value=1e+02 Score=33.07 Aligned_cols=132 Identities=15% Similarity=0.219 Sum_probs=68.1
Q ss_pred CCCCccCHHHH--------HHHHHcCCCEEEec-------------CcCCh----------------hhHHHHHHHHhcc
Q 008172 261 PTLSKKDWDDI--------EFGIAEGVDFIAMS-------------FVCDA----------------DSVRHLKKYVSGK 303 (575)
Q Consensus 261 p~lsekD~~di--------~~al~~gvd~I~~S-------------fV~sa----------------~dv~~ir~~l~~~ 303 (575)
..||..|++.+ +.|.+.|+|+|-+. ..+.. |-++++|+.+...
T Consensus 132 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~ 211 (353)
T cd04735 132 RELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKH 211 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccc
Confidence 36788887766 47788999999663 23332 1223344444210
Q ss_pred CCCCceEEeeecC----------HHHHhcHHHHHhc-CCEEEEeCCCCCCCCCC-CC-hHHHHHHHHHHHHHcCCCEEEe
Q 008172 304 SSRSIKVLAKIEN----------LESLQKFEEIVEA-SDGIMVARGDLGVDIPL-EQ-IPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 304 ~~~~i~IIaKIEt----------~~av~nldeI~~~-sDgImIaRGDLg~e~~~-e~-v~~~Qk~Ii~~c~~~gKPviva 370 (575)
-..+..|-.+|-- .+.++-+..+.+. .|.|=|..|.....-.. .. -....+.+ +++...++||+..
T Consensus 212 ~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~i-k~~~~~~iPVi~~ 290 (353)
T cd04735 212 ADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELV-KERIAGRLPLIAV 290 (353)
T ss_pred cCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHH-HHHhCCCCCEEEE
Confidence 0034556666643 2333333333333 79999987754322111 11 11111222 2222237899975
Q ss_pred hhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 371 SQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 371 Tq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
..+ -|.+ +...++..|+|+|++.
T Consensus 291 Ggi---------~t~e---~ae~~l~~gaD~V~~g 313 (353)
T cd04735 291 GSI---------NTPD---DALEALETGADLVAIG 313 (353)
T ss_pred CCC---------CCHH---HHHHHHHcCCChHHHh
Confidence 433 2333 2355666799999886
No 248
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=57.90 E-value=1.1e+02 Score=31.03 Aligned_cols=120 Identities=12% Similarity=0.122 Sum_probs=66.0
Q ss_pred HHHHHHHHHcCCCEEEecC------c--CChhhHHHHHHHHhccCCCCceEEee----------e------cCHHHHhcH
Q 008172 268 WDDIEFGIAEGVDFIAMSF------V--CDADSVRHLKKYVSGKSSRSIKVLAK----------I------ENLESLQKF 323 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~Sf------V--~sa~dv~~ir~~l~~~~~~~i~IIaK----------I------Et~~av~nl 323 (575)
.+.++.+-+.|+++|=+.+ . -+..+++++++.+.+.| +.+.+- + +..++++.+
T Consensus 16 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~g---l~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~ 92 (275)
T PRK09856 16 EHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQ---MPIIGYTPETNGYPYNMMLGDEHMRRESLDMI 92 (275)
T ss_pred HHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcC---CeEEEecCcccCcCccccCCCHHHHHHHHHHH
Confidence 4667888999999998742 1 23457889999888776 333331 0 112344455
Q ss_pred HHHHhc-----CCEEEEeCCCCCCCCCC----CChHHHHHHHHHHHHHcCCCEEEehhhHHhhh---cCCCCChhhHhhH
Q 008172 324 EEIVEA-----SDGIMVARGDLGVDIPL----EQIPTVQEIIIHVCRQLNKPVIVASQLLESMV---EYPTPTRAEVADV 391 (575)
Q Consensus 324 deI~~~-----sDgImIaRGDLg~e~~~----e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~---~~p~PtrAEv~Dv 391 (575)
...++. ++.|.+..|..+..-.. +.+...-+++.+.|.++|..+.+ |.|. .+..+|.+++-++
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~i-----E~~~~~~~~~~~t~~~~~~l 167 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLIL-----EPLTPYESNVVCNANDVLHA 167 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEE-----ecCCCCcccccCCHHHHHHH
Confidence 444444 57777766654422111 23333445666667777665543 3221 1234455555555
Q ss_pred HHHH
Q 008172 392 SEAV 395 (575)
Q Consensus 392 ~nav 395 (575)
.+.+
T Consensus 168 ~~~~ 171 (275)
T PRK09856 168 LALV 171 (275)
T ss_pred HHHc
Confidence 5543
No 249
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=57.66 E-value=2e+02 Score=29.55 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=74.3
Q ss_pred cCHHHHHH-HHHcCCCEEEe-----cCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCC
Q 008172 266 KDWDDIEF-GIAEGVDFIAM-----SFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARG 338 (575)
Q Consensus 266 kD~~di~~-al~~gvd~I~~-----SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRG 338 (575)
.|..++.. ..+.|++.|.+ -|=.+.++++.+++.. ++.|+.|==-..-. .+++.... +|+|.+.=.
T Consensus 70 ~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v------~iPvl~kdfi~~~~-qi~~a~~~GAD~VlLi~~ 142 (260)
T PRK00278 70 FDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV------SLPVLRKDFIIDPY-QIYEARAAGADAILLIVA 142 (260)
T ss_pred CCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc------CCCEEeeeecCCHH-HHHHHHHcCCCEEEEEec
Confidence 35555544 45679999977 6778999999999864 24555421000011 24555454 899999755
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccC
Q 008172 339 DLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGE 407 (575)
Q Consensus 339 DLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~E 407 (575)
+|. +.--+++++.|+..|.-+++-+ -+.+|+ ..|...|+|.+.+++.
T Consensus 143 ~l~--------~~~l~~li~~a~~lGl~~lvev-----------h~~~E~---~~A~~~gadiIgin~r 189 (260)
T PRK00278 143 ALD--------DEQLKELLDYAHSLGLDVLVEV-----------HDEEEL---ERALKLGAPLIGINNR 189 (260)
T ss_pred cCC--------HHHHHHHHHHHHHcCCeEEEEe-----------CCHHHH---HHHHHcCCCEEEECCC
Confidence 553 2456789999999999988743 333333 5567789999988753
No 250
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=57.58 E-value=17 Score=39.70 Aligned_cols=93 Identities=20% Similarity=0.230 Sum_probs=62.4
Q ss_pred CHHHHHHHHHcC-CCEEEecCcC--C---------------hhhHHHHHHHHhccCC-CCceEEeeecCHHHHhcHHHHH
Q 008172 267 DWDDIEFGIAEG-VDFIAMSFVC--D---------------ADSVRHLKKYVSGKSS-RSIKVLAKIENLESLQKFEEIV 327 (575)
Q Consensus 267 D~~di~~al~~g-vd~I~~SfV~--s---------------a~dv~~ir~~l~~~~~-~~i~IIaKIEt~~av~nldeI~ 327 (575)
+.+++..+++.+ +|+|.++--. + ..-+.++++++...+. .++.||+ --|+.+=.+++
T Consensus 226 ~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~via----sGGI~~g~Dv~ 301 (392)
T cd02808 226 GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIA----SGGLRTGADVA 301 (392)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEE----ECCCCCHHHHH
Confidence 677888888877 9999999874 1 2233455555543321 3466666 24566655665
Q ss_pred hc----CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehh
Q 008172 328 EA----SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQ 372 (575)
Q Consensus 328 ~~----sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq 372 (575)
+. +|++.+||.=|-.- --...+.|+....|+++|||
T Consensus 302 kalaLGAd~V~ig~~~l~al---------~c~~~~~c~~~~cP~Giat~ 341 (392)
T cd02808 302 KALALGADAVGIGTAALIAL---------GCIQARKCHTNTCPVGVATQ 341 (392)
T ss_pred HHHHcCCCeeeechHHHHhc---------chHHHHhcCCCCCCcccccC
Confidence 55 89999998765221 11345889999999999998
No 251
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=57.48 E-value=46 Score=32.80 Aligned_cols=144 Identities=20% Similarity=0.249 Sum_probs=82.3
Q ss_pred CCCCccCHH-HHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHH-------HhcHHHHHhc-CC
Q 008172 261 PTLSKKDWD-DIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLES-------LQKFEEIVEA-SD 331 (575)
Q Consensus 261 p~lsekD~~-di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~a-------v~nldeI~~~-sD 331 (575)
|..|+.|.+ .+..+.+.++|.|+++ +..+..+++.+... .+.+-+=+=.+.| +...++-++. +|
T Consensus 12 p~~t~~~i~~~~~~a~~~~~~av~v~----p~~v~~~~~~l~~~---~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAd 84 (203)
T cd00959 12 PDATEEDIRKLCDEAKEYGFAAVCVN----PCFVPLAREALKGS---GVKVCTVIGFPLGATTTEVKVAEAREAIADGAD 84 (203)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEc----HHHHHHHHHHcCCC---CcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCC
Confidence 677888864 4567888899999987 67777777777532 2444444433333 2234555554 77
Q ss_pred EEEEeCCCCCCCCCC------CChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHcccceEEe
Q 008172 332 GIMVARGDLGVDIPL------EQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQYADALML 404 (575)
Q Consensus 332 gImIaRGDLg~e~~~------e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~G~D~vmL 404 (575)
.|-+- +.++. +.+..--+++.+.|. |+|+.+ ++|. +.-+..++...+. ++..|+|.|=-
T Consensus 85 evdvv-----~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkv---I~e~----~~l~~~~i~~a~ria~e~GaD~IKT 150 (203)
T cd00959 85 EIDMV-----INIGALKSGDYEAVYEEIAAVVEACG--GAPLKV---ILET----GLLTDEEIIKACEIAIEAGADFIKT 150 (203)
T ss_pred EEEEe-----ecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEE---EEec----CCCCHHHHHHHHHHHHHhCCCEEEc
Confidence 77653 22221 223333344555554 788855 3322 1123456666665 78889999876
Q ss_pred c-cCcCCCCCHHHHHHHHHHHHH
Q 008172 405 S-GESAIGPFGQKAVSVLQMASS 426 (575)
Q Consensus 405 s-~ETa~G~yPveaV~~m~~I~~ 426 (575)
| |=++.|-- ++.|+.|++++.
T Consensus 151 sTG~~~~~at-~~~v~~~~~~~~ 172 (203)
T cd00959 151 STGFGPGGAT-VEDVKLMKEAVG 172 (203)
T ss_pred CCCCCCCCCC-HHHHHHHHHHhC
Confidence 4 22222322 367777776654
No 252
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=57.39 E-value=1.6e+02 Score=30.46 Aligned_cols=124 Identities=15% Similarity=0.059 Sum_probs=73.2
Q ss_pred HHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhhh
Q 008172 355 IIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSRE 434 (575)
Q Consensus 355 ~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 434 (575)
-+...|++.|.|+.+. .|..+...-+...-..|++.+...+... + ...++++...++.++-+.+
T Consensus 67 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~Ga~v~~~~~~~~-~-~~~~~~~~a~~~~~~~~~~--- 130 (291)
T cd01561 67 GLAMVAAAKGYRFIIV-----------MPETMSEEKRKLLRALGAEVILTPEAEA-D-GMKGAIAKARELAAETPNA--- 130 (291)
T ss_pred HHHHHHHHcCCeEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCCCc-C-CHHHHHHHHHHHHhhCCCc---
Confidence 4567899999999985 3444444555666779999887763311 1 1245555544443221011
Q ss_pred hhhHHhhhcccccCCCCCCchhhHHH-HHHHHHHHhcC--CcEEEEEcCChhHHHH----HhccCCCCcEEEEcCcH
Q 008172 435 ENRQSALCGQRQLGESLHDRIAEQIC-NCAVDMANNLG--VDAIFVYTKHGHMASL----LSRNRPNPPIFAFTNDD 504 (575)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~ia-~~av~~a~~~~--AkaIVVfT~SG~TAr~----VSr~RP~~PIiAvT~~~ 504 (575)
+ ...+.. .+.. .+.-. .-+.|+.++++ .+.||+.+-+|.++.- +..++|...|++|-+..
T Consensus 131 ------~-~~~~~~--~p~~-~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~ 197 (291)
T cd01561 131 ------F-WLNQFE--NPAN-PEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVG 197 (291)
T ss_pred ------E-EecCCC--CchH-HHHHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 1 111111 1111 12222 33567777775 6899999999997654 44467999999998764
No 253
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=57.35 E-value=43 Score=33.32 Aligned_cols=118 Identities=14% Similarity=0.179 Sum_probs=70.7
Q ss_pred HHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCC-
Q 008172 268 WDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPL- 346 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~- 346 (575)
...++.-.+.|+|+|.+. +++.+++.++.+++++.| ....|.-+-+| .++.++.++...|.|++ ++++-|.
T Consensus 70 ~~~i~~~~~~g~~~i~~H-~E~~~~~~~~i~~ik~~g-~k~GialnP~T--~~~~~~~~l~~vD~Vlv----MsV~PG~~ 141 (201)
T PF00834_consen 70 ERYIEEFAEAGADYITFH-AEATEDPKETIKYIKEAG-IKAGIALNPET--PVEELEPYLDQVDMVLV----MSVEPGFG 141 (201)
T ss_dssp GGHHHHHHHHT-SEEEEE-GGGTTTHHHHHHHHHHTT-SEEEEEE-TTS---GGGGTTTGCCSSEEEE----ESS-TTTS
T ss_pred HHHHHHHHhcCCCEEEEc-ccchhCHHHHHHHHHHhC-CCEEEEEECCC--CchHHHHHhhhcCEEEE----EEecCCCC
Confidence 456777789999988665 467788888889998887 56777777777 67889999999999998 4555443
Q ss_pred -----CChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCC-CCChhhHhhHHHHHHcccceEEec
Q 008172 347 -----EQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYP-TPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 347 -----e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p-~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
+.+..--+++-+...++|..+-+. +.-. .+. -+......|+|.+.+.
T Consensus 142 Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~-------vDGGI~~~-----~~~~~~~aGad~~V~G 194 (201)
T PF00834_consen 142 GQKFIPEVLEKIRELRKLIPENGLDFEIE-------VDGGINEE-----NIKQLVEAGADIFVAG 194 (201)
T ss_dssp SB--HGGHHHHHHHHHHHHHHHTCGSEEE-------EESSESTT-----THHHHHHHT--EEEES
T ss_pred cccccHHHHHHHHHHHHHHHhcCCceEEE-------EECCCCHH-----HHHHHHHcCCCEEEEC
Confidence 222222223333344444333331 1111 122 2245567899988764
No 254
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=56.96 E-value=67 Score=33.59 Aligned_cols=112 Identities=18% Similarity=0.275 Sum_probs=67.3
Q ss_pred HHHHcCCCEEEecCcCChhhHHH-HHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHH
Q 008172 273 FGIAEGVDFIAMSFVCDADSVRH-LKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPT 351 (575)
Q Consensus 273 ~al~~gvd~I~~SfV~sa~dv~~-ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~ 351 (575)
-++..|+|.+ +|-+..++.. +|.|. .+..+=.=.....+++-++..+.-.+++.||+| ||- -|.+..
T Consensus 52 sa~~~GaDL~---HiFCe~~Aa~vIKsYs-----PdLIVHP~l~~~~av~~i~k~L~RlhavVIGPG-LGR---dp~~~k 119 (306)
T KOG3974|consen 52 SALRVGADLS---HIFCEPEAAVVIKSYS-----PDLIVHPVLDQENAVDIIEKLLQRLHAVVIGPG-LGR---DPAILK 119 (306)
T ss_pred HHHHhcccee---eeeechhHHHHHhhcC-----CceeecccccCCchHhHHHHHHhheeEEEECCC-CCC---CHHHHH
Confidence 3677788853 3333334433 34443 222222222233478888888888999999987 443 355666
Q ss_pred HHHHHHHHHHHcCCCEEE-------ehhhHHhhhcCC-----CCChhhHhhHHHHHH
Q 008172 352 VQEIIIHVCRQLNKPVIV-------ASQLLESMVEYP-----TPTRAEVADVSEAVR 396 (575)
Q Consensus 352 ~Qk~Ii~~c~~~gKPviv-------aTq~LeSM~~~p-----~PtrAEv~Dv~nav~ 396 (575)
..+.|++-|+..++|+.+ .+|-.|.|+..- .|.--|-..+..+++
T Consensus 120 ~i~~iley~~~~dvP~VIDaDGL~Lv~q~~e~l~~~~~~viLTPNvvEFkRLcd~~l 176 (306)
T KOG3974|consen 120 EIAKILEYLRGKDVPLVIDADGLWLVEQLPERLIGGYPKVILTPNVVEFKRLCDAEL 176 (306)
T ss_pred HHHHHHHHHhcCCCcEEEcCCceEehhhchhhhhccCceeeeCCcHHHHHHHHHHhh
Confidence 677899999999999985 344444333311 355555555555544
No 255
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=56.87 E-value=1.5e+02 Score=30.85 Aligned_cols=98 Identities=20% Similarity=0.274 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCCCEEEec------CcCChhhHHHHHH-HHhccCCCCceEEeeec--CHHHHhcHHHHHhc-CCEEEEeC
Q 008172 268 WDDIEFGIAEGVDFIAMS------FVCDADSVRHLKK-YVSGKSSRSIKVLAKIE--NLESLQKFEEIVEA-SDGIMVAR 337 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~S------fV~sa~dv~~ir~-~l~~~~~~~i~IIaKIE--t~~av~nldeI~~~-sDgImIaR 337 (575)
.+.+++.++.|+|+|++. +--|.++-.++-+ .++..+ .++.||+-+- +.++++.....-+. +|++|+.+
T Consensus 24 ~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~-~~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~~p 102 (289)
T cd00951 24 RAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETA-GRVPVLAGAGYGTATAIAYAQAAEKAGADGILLLP 102 (289)
T ss_pred HHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-CCCCEEEecCCCHHHHHHHHHHHHHhCCCEEEECC
Confidence 356678899999999764 3345555555444 344333 4577888774 23333333333333 79999976
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 338 GDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 338 GDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
--..- .+.+.+...-+.+ |.+.+.|+++-
T Consensus 103 P~y~~-~~~~~i~~~f~~v---~~~~~~pi~lY 131 (289)
T cd00951 103 PYLTE-APQEGLYAHVEAV---CKSTDLGVIVY 131 (289)
T ss_pred CCCCC-CCHHHHHHHHHHH---HhcCCCCEEEE
Confidence 54321 1223344444444 44557898874
No 256
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=56.82 E-value=19 Score=35.75 Aligned_cols=40 Identities=13% Similarity=0.318 Sum_probs=36.0
Q ss_pred CHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhh
Q 008172 103 SMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNH 142 (575)
Q Consensus 103 ~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~ 142 (575)
-.+.|.+|.++|++.|||.+-.-+.++..++++..|++-.
T Consensus 158 l~~~l~~L~~~Gv~~~rI~~r~~~~~~~~~iv~~Y~~~l~ 197 (233)
T PF01136_consen 158 LLDELPELKDAGVDSFRIDGRTESPEYIEEIVKAYREALD 197 (233)
T ss_pred HHHHHHHHHHcCCCEEEEcCccCCHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999998744
No 257
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=56.80 E-value=19 Score=34.89 Aligned_cols=64 Identities=17% Similarity=0.292 Sum_probs=47.5
Q ss_pred CHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHH--hcHHHHHhc-CCEEEEe
Q 008172 267 DWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESL--QKFEEIVEA-SDGIMVA 336 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av--~nldeI~~~-sDgImIa 336 (575)
..+.+..+++.|+|.|.+=.. ++++++++.+.+...+ .+ .+||---|+ +|+.++++. +|+|-+|
T Consensus 89 ~~ee~~ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~~-~~----v~ie~SGGI~~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 89 NLEEAEEALEAGADIIMLDNM-SPEDLKEAVEELRELN-PR----VKIEASGGITLENIAEYAKTGVDVISVG 155 (169)
T ss_dssp SHHHHHHHHHTT-SEEEEES--CHHHHHHHHHHHHHHT-TT----SEEEEESSSSTTTHHHHHHTT-SEEEEC
T ss_pred CHHHHHHHHHhCCCEEEecCc-CHHHHHHHHHHHhhcC-Cc----EEEEEECCCCHHHHHHHHhcCCCEEEcC
Confidence 356778899999999999876 7899999999887665 34 455544444 488888888 6999886
No 258
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=56.74 E-value=2.5e+02 Score=29.16 Aligned_cols=128 Identities=14% Similarity=0.221 Sum_probs=76.5
Q ss_pred CccCHHHHHHHHHcCCCEEEe---------------------cCcCCh----hhHHHHHHHHhcc-CCCCceEEeee--c
Q 008172 264 SKKDWDDIEFGIAEGVDFIAM---------------------SFVCDA----DSVRHLKKYVSGK-SSRSIKVLAKI--E 315 (575)
Q Consensus 264 sekD~~di~~al~~gvd~I~~---------------------SfV~sa----~dv~~ir~~l~~~-~~~~i~IIaKI--E 315 (575)
..+.-+.+++..+.|+++|.. .++++- .......+.+... ......++++| .
T Consensus 21 ~~~~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~~~~~~pl~~qi~g~ 100 (300)
T TIGR01037 21 MGSGVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVREEFPTPLIASVYGS 100 (300)
T ss_pred CCCCHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHhccCCCcEEEEeecC
Confidence 345667777777889999988 222110 0122222222211 11235689999 5
Q ss_pred CHHHHhcHHHHHhc----CCEEEEeCCCCCCCCCCC--------ChHHHHHHHHHHHHHc-CCCEEEehhhHHhhhcCCC
Q 008172 316 NLESLQKFEEIVEA----SDGIMVARGDLGVDIPLE--------QIPTVQEIIIHVCRQL-NKPVIVASQLLESMVEYPT 382 (575)
Q Consensus 316 t~~av~nldeI~~~----sDgImIaRGDLg~e~~~e--------~v~~~Qk~Ii~~c~~~-gKPvivaTq~LeSM~~~p~ 382 (575)
+++.+...-+.++. +|+|=+. +.+|.. .-+..-.+++++.++. ++|+.+=. .
T Consensus 101 ~~~~~~~~a~~~~~~~~~~d~ielN-----~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi----------~ 165 (300)
T TIGR01037 101 SVEEFAEVAEKLEKAPPYVDAYELN-----LSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKL----------S 165 (300)
T ss_pred CHHHHHHHHHHHHhccCccCEEEEE-----CCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEC----------C
Confidence 66666555555552 6777553 444432 2345557888888865 89999742 3
Q ss_pred CChhhHhhHHH-HHHcccceEEecc
Q 008172 383 PTRAEVADVSE-AVRQYADALMLSG 406 (575)
Q Consensus 383 PtrAEv~Dv~n-av~~G~D~vmLs~ 406 (575)
|+-.|..+++. +...|+|++.+++
T Consensus 166 ~~~~~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 166 PNVTDITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEc
Confidence 55566777776 4568999999985
No 259
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.73 E-value=24 Score=36.94 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=51.4
Q ss_pred cCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCC-CCceEEeeecCHHHH--hcHHHHHhc-CCEEEEeC
Q 008172 266 KDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSS-RSIKVLAKIENLESL--QKFEEIVEA-SDGIMVAR 337 (575)
Q Consensus 266 kD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~-~~i~IIaKIEt~~av--~nldeI~~~-sDgImIaR 337 (575)
...+.+..+++.|+|.|.+=.. ++++++++.+.+...+. .++ +||---|+ +|+.++++. +|+|-++.
T Consensus 190 ~~leea~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~~----~leaSGGI~~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 190 ESLEDALKAAKAGADIIMLDNM-TPEEIREVIEALKREGLRERV----KIEVSGGITPENIEEYAKLDVDVISLGA 260 (278)
T ss_pred CCHHHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCCE----EEEEECCCCHHHHHHHHHcCCCEEEeCh
Confidence 3578888999999999999887 89999999998876542 233 35544444 578888888 89999863
No 260
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=56.72 E-value=16 Score=40.23 Aligned_cols=49 Identities=14% Similarity=0.315 Sum_probs=41.2
Q ss_pred ceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHH
Q 008172 91 TKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQ 139 (575)
Q Consensus 91 tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~ 139 (575)
-..-|.+|+.-.+.+..+.|+++|+|+.=+..+||..+...++++.+|+
T Consensus 142 l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~ 190 (404)
T PRK06843 142 LRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKT 190 (404)
T ss_pred eEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHh
Confidence 4566778887667789999999999999999999988877777777774
No 261
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.60 E-value=47 Score=35.03 Aligned_cols=67 Identities=16% Similarity=0.311 Sum_probs=50.0
Q ss_pred ccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEee--ecCHHHHhcHHHHHhc-CCEEEEeC
Q 008172 265 KKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAK--IENLESLQKFEEIVEA-SDGIMVAR 337 (575)
Q Consensus 265 ekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaK--IEt~~av~nldeI~~~-sDgImIaR 337 (575)
-.+.+.+..|++.|+|+|.+-.. ++++++++.+.++..+ .++.+.|= | -.+|+.+.++. +|+|-++.
T Consensus 203 v~tleea~eA~~~GaD~I~LDn~-~~e~l~~av~~~~~~~-~~i~leAsGGI----t~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 203 TETLEQVQEALEYGADIIMLDNM-PVDLMQQAVQLIRQQN-PRVKIEASGNI----TLETIRAVAETGVDYISSSA 272 (288)
T ss_pred CCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHhcC-CCeEEEEECCC----CHHHHHHHHHcCCCEEEEch
Confidence 35688888999999999999964 7789999888776543 34443332 3 25688888888 99999975
No 262
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=56.37 E-value=58 Score=35.55 Aligned_cols=96 Identities=18% Similarity=0.273 Sum_probs=53.7
Q ss_pred ChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHc--CC
Q 008172 289 DADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQL--NK 365 (575)
Q Consensus 289 sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~--gK 365 (575)
+-++++++++.. +..|+.| + ....+......+. +|+|+|+--- |-++. ..+..-..+.+..... ..
T Consensus 216 ~w~~i~~l~~~~------~~PvivK-G-v~~~eda~~a~~~Gvd~I~VS~HG-Grq~~--~~~a~~~~L~ei~~av~~~i 284 (367)
T TIGR02708 216 SPRDIEEIAGYS------GLPVYVK-G-PQCPEDADRALKAGASGIWVTNHG-GRQLD--GGPAAFDSLQEVAEAVDKRV 284 (367)
T ss_pred CHHHHHHHHHhc------CCCEEEe-C-CCCHHHHHHHHHcCcCEEEECCcC-ccCCC--CCCcHHHHHHHHHHHhCCCC
Confidence 447788877754 3568888 1 1112333333344 8999886322 33331 1111111222222223 37
Q ss_pred CEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccC
Q 008172 366 PVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGE 407 (575)
Q Consensus 366 PvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~E 407 (575)
|+|+...+- .-.|+..|+..|+|++|+..-
T Consensus 285 ~vi~dGGIr------------~g~Dv~KaLalGAd~V~igR~ 314 (367)
T TIGR02708 285 PIVFDSGVR------------RGQHVFKALASGADLVALGRP 314 (367)
T ss_pred cEEeeCCcC------------CHHHHHHHHHcCCCEEEEcHH
Confidence 888754433 357999999999999999643
No 263
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=56.10 E-value=2.2e+02 Score=30.18 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhc-----CCcEEEEEcCChhHHHHHhcc----CCCCcEEEEcCcH
Q 008172 458 QICNCAVDMANNL-----GVDAIFVYTKHGHMASLLSRN----RPNPPIFAFTNDD 504 (575)
Q Consensus 458 ~ia~~av~~a~~~-----~AkaIVVfT~SG~TAr~VSr~----RP~~PIiAvT~~~ 504 (575)
.....+-++..++ ..+.||+.+=||.|+--++++ .|.+.|+++-+..
T Consensus 166 g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 166 GYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 3334444776665 468999999999988766654 5999999998865
No 264
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=56.08 E-value=19 Score=38.53 Aligned_cols=44 Identities=18% Similarity=0.400 Sum_probs=37.0
Q ss_pred ecCCCCCCHHHHHHHHHcCC--cEEEeeCCCCCHHHHHHHHHHHHH
Q 008172 96 TIGPACCSMEDLEKLAMGGM--NVARLNMCHNTREWHLDVIRKIKQ 139 (575)
Q Consensus 96 TiGPas~~~e~l~~li~~G~--~v~RlN~SHg~~e~~~~~i~~ir~ 139 (575)
.+|....+.+...+|+++|+ |+.=++-+||..+..+++|+.||+
T Consensus 91 ~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~ 136 (326)
T PRK05458 91 SVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKK 136 (326)
T ss_pred EecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHh
Confidence 45554566789999999966 999999999999988999888885
No 265
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=55.98 E-value=1.6e+02 Score=31.06 Aligned_cols=117 Identities=18% Similarity=0.210 Sum_probs=59.7
Q ss_pred HHHHHcCCCEEEecCc----------------CChhhHHHHHHHHhccCCCCceEEeee-----cCH-HHHhcHHHHHhc
Q 008172 272 EFGIAEGVDFIAMSFV----------------CDADSVRHLKKYVSGKSSRSIKVLAKI-----ENL-ESLQKFEEIVEA 329 (575)
Q Consensus 272 ~~al~~gvd~I~~SfV----------------~sa~dv~~ir~~l~~~~~~~i~IIaKI-----Et~-~av~nldeI~~~ 329 (575)
+.+.+.|+|+|=+.+= ++++-+.++.+.+.+. -.+.|.+|| ++. +.++-...+.+.
T Consensus 82 ~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~--~~~pv~vKir~g~~~~~~~~~~~a~~l~~~ 159 (319)
T TIGR00737 82 KINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDA--VDIPVTVKIRIGWDDAHINAVEAARIAEDA 159 (319)
T ss_pred HHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhh--cCCCEEEEEEcccCCCcchHHHHHHHHHHh
Confidence 4556679999866432 2333344444444332 136799998 222 222222223333
Q ss_pred -CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHH-HcccceEEec
Q 008172 330 -SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAV-RQYADALMLS 405 (575)
Q Consensus 330 -sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav-~~G~D~vmLs 405 (575)
+|+|-|.-..-. -+.+. +.....+-+.....+.||+.... .-|.+ |+..++ ..|+|+||+.
T Consensus 160 G~d~i~vh~r~~~--~~~~~-~~~~~~i~~i~~~~~ipvi~nGg---------I~~~~---da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 160 GAQAVTLHGRTRA--QGYSG-EANWDIIARVKQAVRIPVIGNGD---------IFSPE---DAKAMLETTGCDGVMIG 222 (319)
T ss_pred CCCEEEEEccccc--ccCCC-chhHHHHHHHHHcCCCcEEEeCC---------CCCHH---HHHHHHHhhCCCEEEEC
Confidence 699977422111 11111 11223333334446799997543 33443 455555 4789999995
No 266
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=55.80 E-value=8.4 Score=28.70 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=19.5
Q ss_pred CCcEEEeeCC-CCCHHHHHHHHHHHH
Q 008172 114 GMNVARLNMC-HNTREWHLDVIRKIK 138 (575)
Q Consensus 114 G~~v~RlN~S-Hg~~e~~~~~i~~ir 138 (575)
-+.|.+++|| |++.++..++++.++
T Consensus 6 ~a~v~~~~fSgHad~~~L~~~i~~~~ 31 (43)
T PF07521_consen 6 RARVEQIDFSGHADREELLEFIEQLN 31 (43)
T ss_dssp -SEEEESGCSSS-BHHHHHHHHHHHC
T ss_pred EEEEEEEeecCCCCHHHHHHHHHhcC
Confidence 4678999998 999998888887774
No 267
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=55.52 E-value=23 Score=37.91 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=41.6
Q ss_pred eEEEecCCCCCCHHHHHHHHHcC--CcEEEeeCCCCCHHHHHHHHHHHHH
Q 008172 92 KMVCTIGPACCSMEDLEKLAMGG--MNVARLNMCHNTREWHLDVIRKIKQ 139 (575)
Q Consensus 92 kIi~TiGPas~~~e~l~~li~~G--~~v~RlN~SHg~~e~~~~~i~~ir~ 139 (575)
-..+.+|-...+.|.+.+|+++| .|+.=+..+||..+...+.++.+|+
T Consensus 84 ~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~ 133 (321)
T TIGR01306 84 FASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKT 133 (321)
T ss_pred EEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHH
Confidence 46777888888889999999999 6999999999999888777777775
No 268
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=54.96 E-value=54 Score=32.28 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=44.6
Q ss_pred hHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 292 SVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 292 dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
-+..+.+.+++.+ .++.+-+.-++... +|++++++-.|.|+.+-+. +..+..+-+.|+++++|++.+
T Consensus 76 Ka~~~~~~l~~~n-p~v~i~~~~~~i~~-~~~~~~~~~~D~Vi~~~d~----------~~~r~~l~~~~~~~~ip~i~~ 142 (202)
T TIGR02356 76 KVEVAAQRLRELN-SDIQVTALKERVTA-ENLELLINNVDLVLDCTDN----------FATRYLINDACVALGTPLISA 142 (202)
T ss_pred HHHHHHHHHHHhC-CCCEEEEehhcCCH-HHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 3445555565554 45554443333222 5788888889998887322 356778999999999999975
No 269
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=54.91 E-value=22 Score=36.10 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEcCChhHHHHHhccCCCCcEEEEcCcHHHHHHhcccCCcEEEEec
Q 008172 456 AEQICNCAVDMANNLGVDAIFVYTKHGHMASLLSRNRPNPPIFAFTNDDSTRMALNLQWGVIPVLVN 522 (575)
Q Consensus 456 ~~~ia~~av~~a~~~~AkaIVVfT~SG~TAr~VSr~RP~~PIiAvT~~~~~aR~L~L~~GV~Pvl~~ 522 (575)
..+||..|.++-.. -+ .+|=.+|.|...++++-|..++-++|++..++..|.-.-++.-++..
T Consensus 80 K~~IA~~Aa~lI~~--gd--~Ifld~GtT~~~l~~~L~~~~ltVvTNs~~ia~~l~~~~~~~vil~G 142 (240)
T PRK10411 80 KADIAREALAWIEE--GM--VIALDASSTCWYLARQLPDINIQVFTNSHPICQELGKRERIQLISSG 142 (240)
T ss_pred HHHHHHHHHHhCCC--CC--EEEEcCcHHHHHHHHhhCCCCeEEEeCCHHHHHHHhcCCCCEEEEEC
Confidence 46788877766644 33 35567899999999999887999999999999999877888776664
No 270
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=54.90 E-value=54 Score=32.25 Aligned_cols=67 Identities=13% Similarity=0.175 Sum_probs=48.2
Q ss_pred HHHHHHHHhccCCCCceEEeeecCHH-HHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 293 VRHLKKYVSGKSSRSIKVLAKIENLE-SLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 293 v~~ir~~l~~~~~~~i~IIaKIEt~~-av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
++.+++.+++.+ .++.|.+.-|+.. ..++.+++++-.|.|+.+-.+ +.....+-+.|+++++|++.+
T Consensus 77 a~~~~~~L~~lN-p~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~----------~~~~~~ln~~c~~~~ip~i~~ 144 (198)
T cd01485 77 AAASYEFLQELN-PNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEEN----------YERTAKVNDVCRKHHIPFISC 144 (198)
T ss_pred HHHHHHHHHHHC-CCCEEEEEecccccchhhHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 445566676666 6777777655543 246778888889998886221 456667889999999999986
No 271
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=54.89 E-value=1e+02 Score=33.50 Aligned_cols=216 Identities=13% Similarity=0.160 Sum_probs=117.4
Q ss_pred HHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCC
Q 008172 269 DDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQ 348 (575)
Q Consensus 269 ~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~ 348 (575)
+.|+...+.|+|.|=+. |.+.++++.++.+.+.. .+.++|-|-- +.--.+..+-.-+|++-|.||.+ ..
T Consensus 46 ~Qi~~L~~aGceiVRva-v~~~~~a~al~~I~~~~---~iPlvADIHF-d~~lAl~a~~~G~~~iRINPGNi------g~ 114 (360)
T PRK00366 46 AQIKRLARAGCEIVRVA-VPDMEAAAALPEIKKQL---PVPLVADIHF-DYRLALAAAEAGADALRINPGNI------GK 114 (360)
T ss_pred HHHHHHHHcCCCEEEEc-cCCHHHHHhHHHHHHcC---CCCEEEecCC-CHHHHHHHHHhCCCEEEECCCCC------Cc
Confidence 33455667899997665 46777777777655432 5889999833 12222334444489999999998 34
Q ss_pred hHHHHHHHHHHHHHcCCCEEEeh-------hhHHhhhcCCCCChhh-----HhhHHHHHHcccceEEeccCcCCCCCHHH
Q 008172 349 IPTVQEIIIHVCRQLNKPVIVAS-------QLLESMVEYPTPTRAE-----VADVSEAVRQYADALMLSGESAIGPFGQK 416 (575)
Q Consensus 349 v~~~Qk~Ii~~c~~~gKPvivaT-------q~LeSM~~~p~PtrAE-----v~Dv~nav~~G~D~vmLs~ETa~G~yPve 416 (575)
...--+.++++|+++|+|+=+-. ++|+.- ..||..- +..+.-+-..|+|=+.+|--.+ .|.+
T Consensus 115 ~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~y---g~~t~eamveSAl~~~~~le~~~f~~iviS~KsS---~v~~ 188 (360)
T PRK00366 115 RDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKY---GEPTPEALVESALRHAKILEELGFDDIKISVKAS---DVQD 188 (360)
T ss_pred hHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHc---CCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcC---CHHH
Confidence 45667899999999999986543 344432 2344322 2233335567888888874433 3445
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcCCcEEEEEcCChhHHHHHhccCCCCc
Q 008172 417 AVSVLQMASSRMELWSREENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLGVDAIFVYTKHGHMASLLSRNRPNPP 496 (575)
Q Consensus 417 aV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~AkaIVVfT~SG~TAr~VSr~RP~~P 496 (575)
+++.-+.+++.. +|. .+ + ..-+........+..+++.+.. +++-++-..=|-+|..-----.++
T Consensus 189 ~i~ayrlla~~~----dyP-LH--l-GvTEAG~~~~G~iKSa~gig~L-L~~GIGDTiRVSLt~~P~~EV~va------- 252 (360)
T PRK00366 189 LIAAYRLLAKRC----DYP-LH--L-GVTEAGMGFKGTVKSAAGLGAL-LQEGIGDTIRVSLTADPVEEVKVG------- 252 (360)
T ss_pred HHHHHHHHHhcC----CCC-ce--e-cccCCCCCCCceehhHHHHHHH-HHhcCCCeEEEeCCCCCHHHHHHH-------
Confidence 555433332211 110 00 0 0000011122344555665554 444444443344443321111111
Q ss_pred EEEEcCcHHHHHHhcc-cCCcEEEEecCC
Q 008172 497 IFAFTNDDSTRMALNL-QWGVIPVLVNLS 524 (575)
Q Consensus 497 IiAvT~~~~~aR~L~L-~~GV~Pvl~~~~ 524 (575)
.+..+.|.| .+|+..+.+|.-
T Consensus 253 -------~~IL~slglr~~g~~IisCPgC 274 (360)
T PRK00366 253 -------QEILQSLGLRSRGPEVISCPTC 274 (360)
T ss_pred -------HHHHHHcCCccCCCeEEECCCC
Confidence 236677778 478888888754
No 272
>TIGR01047 nspC carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus.
Probab=54.67 E-value=40 Score=36.60 Aligned_cols=54 Identities=15% Similarity=0.003 Sum_probs=38.8
Q ss_pred ccccccchhhhhhcccCCCCCceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHH
Q 008172 70 LGFDAVSEGELREKGFLGLRKTKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLD 132 (575)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~r~tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~ 132 (575)
+++|.+|.+|+...-.. . ..+||.| ||.- +.+.|+..+++|. ++|+- +.++...
T Consensus 52 ~G~D~aS~gEl~~al~a-~-~~~~i~~-~~~k-~~~el~~a~~~g~---~i~id--S~~el~~ 105 (380)
T TIGR01047 52 DGCTASGLWEAKLAKEE-F-GKEIHVY-SPAY-SEEDVPEIIPLAD---HIIFN--SLAQWAR 105 (380)
T ss_pred CcccccCHHHHHHHHHH-C-CCcEEEE-CCCC-CHHHHHHHHHcCC---EEEEC--CHHHHHH
Confidence 56788889988874322 2 3788999 8866 7889999999985 45555 5655543
No 273
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=54.61 E-value=1.3e+02 Score=31.46 Aligned_cols=116 Identities=22% Similarity=0.324 Sum_probs=75.2
Q ss_pred HHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEE--eC-CCCCCCCCC
Q 008172 270 DIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMV--AR-GDLGVDIPL 346 (575)
Q Consensus 270 di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImI--aR-GDLg~e~~~ 346 (575)
-++.+-+.|+|+++++-.- .|+..++.+++.+.|-+-+.+++=-=+ -+.++.|++.++|.+- +| |==|++.+.
T Consensus 114 F~~~~~~~GvdGlivpDLP-~ee~~~~~~~~~~~gi~~I~lvaPtt~---~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~ 189 (265)
T COG0159 114 FLRRAKEAGVDGLLVPDLP-PEESDELLKAAEKHGIDPIFLVAPTTP---DERLKKIAEAASGFIYYVSRMGVTGARNPV 189 (265)
T ss_pred HHHHHHHcCCCEEEeCCCC-hHHHHHHHHHHHHcCCcEEEEeCCCCC---HHHHHHHHHhCCCcEEEEecccccCCCccc
Confidence 4567788999999998873 556667888887777555666665433 3568889999877654 44 333444432
Q ss_pred CChHHHHHHHHHHHHH-cCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 347 EQIPTVQEIIIHVCRQ-LNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 347 e~v~~~Qk~Ii~~c~~-~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
...-++.++..++ .++|+.+- -..-+++.+.++..+ +|++...
T Consensus 190 ---~~~~~~~v~~vr~~~~~Pv~vG---------FGIs~~e~~~~v~~~----ADGVIVG 233 (265)
T COG0159 190 ---SADVKELVKRVRKYTDVPVLVG---------FGISSPEQAAQVAEA----ADGVIVG 233 (265)
T ss_pred ---chhHHHHHHHHHHhcCCCeEEe---------cCcCCHHHHHHHHHh----CCeEEEc
Confidence 2224555666665 48999873 246677766666654 6776654
No 274
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=54.21 E-value=1.4e+02 Score=30.06 Aligned_cols=150 Identities=17% Similarity=0.104 Sum_probs=86.5
Q ss_pred CCCCCccCHH-HHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-----CCEE
Q 008172 260 LPTLSKKDWD-DIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-----SDGI 333 (575)
Q Consensus 260 lp~lsekD~~-di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-----sDgI 333 (575)
-|..|+.|.+ .+..|.++|+..|+++ +..+..+++.+.. ..+++.+=|--|.|....+.-+.. .||.
T Consensus 16 ~p~~t~~~i~~~~~~A~~~~~~avcv~----p~~v~~a~~~l~~---~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA 88 (221)
T PRK00507 16 KPEATEEDIDKLCDEAKEYGFASVCVN----PSYVKLAAELLKG---SDVKVCTVIGFPLGANTTAVKAFEAKDAIANGA 88 (221)
T ss_pred CCCCCHHHHHHHHHHHHHhCCeEEEEC----HHHHHHHHHHhCC---CCCeEEEEecccCCCChHHHHHHHHHHHHHcCC
Confidence 3677888864 4567899999999887 7788888888842 357788877666665544333222 1221
Q ss_pred EEeCCCCCCCCCC---CChHHHHHHHHHHHHH-cCCCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHcccceEEeccCc
Q 008172 334 MVARGDLGVDIPL---EQIPTVQEIIIHVCRQ-LNKPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQYADALMLSGES 408 (575)
Q Consensus 334 mIaRGDLg~e~~~---e~v~~~Qk~Ii~~c~~-~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~G~D~vmLs~ET 408 (575)
-- =|+-+.++. .+.-.+.++|.+.... .++++=+ +| +.+.-+..|+.++.. ++..|+|.|--|.=-
T Consensus 89 ~E--iD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKv---Il----Et~~L~~e~i~~a~~~~~~agadfIKTsTG~ 159 (221)
T PRK00507 89 DE--IDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKV---II----ETCLLTDEEKVKACEIAKEAGADFVKTSTGF 159 (221)
T ss_pred ce--EeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEE---Ee----ecCcCCHHHHHHHHHHHHHhCCCEEEcCCCC
Confidence 00 022233332 2444455544433333 2333222 23 456777888888777 778899965544222
Q ss_pred CCCCCHHHHHHHHHHHH
Q 008172 409 AIGPFGQKAVSVLQMAS 425 (575)
Q Consensus 409 a~G~yPveaV~~m~~I~ 425 (575)
+.|---.+.|+.|++.+
T Consensus 160 ~~~gat~~~v~~m~~~~ 176 (221)
T PRK00507 160 STGGATVEDVKLMRETV 176 (221)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 12223367777777553
No 275
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=54.16 E-value=37 Score=34.59 Aligned_cols=71 Identities=20% Similarity=0.224 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCCEEEecCcCCh---hhHHHHHHHHhccCCCCceEEee--ecCHHHHhcHHHHHhc-CCEEEEeCCCCCC
Q 008172 269 DDIEFGIAEGVDFIAMSFVCDA---DSVRHLKKYVSGKSSRSIKVLAK--IENLESLQKFEEIVEA-SDGIMVARGDLGV 342 (575)
Q Consensus 269 ~di~~al~~gvd~I~~SfV~sa---~dv~~ir~~l~~~~~~~i~IIaK--IEt~~av~nldeI~~~-sDgImIaRGDLg~ 342 (575)
+..+.+.+.|+|+|.+.--.+. .+.+.++++-+.. +.+.||+- |.+. ++..+.++. +||+|||||=|.-
T Consensus 152 ~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~--~~ipIIgNGgI~s~---eda~e~l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 152 IDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEF--NDKIIIGNNSIDDI---ESAKEMLKAGADFVSVARAILKG 226 (231)
T ss_pred HHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhc--CCCcEEEECCcCCH---HHHHHHHHhCCCeEEEcHhhccC
Confidence 4445567899999988532222 3555555544322 13567663 3332 233344444 9999999987755
Q ss_pred CC
Q 008172 343 DI 344 (575)
Q Consensus 343 e~ 344 (575)
.+
T Consensus 227 ~~ 228 (231)
T TIGR00736 227 NV 228 (231)
T ss_pred Cc
Confidence 44
No 276
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=54.00 E-value=2e+02 Score=28.41 Aligned_cols=120 Identities=13% Similarity=0.155 Sum_probs=61.2
Q ss_pred cCHHHHHHHHHcCCCEEEecC--cCChhhHHHHHHHHhccCCCCceEE-------eeecCH------HHHhcHHHHHhc-
Q 008172 266 KDWDDIEFGIAEGVDFIAMSF--VCDADSVRHLKKYVSGKSSRSIKVL-------AKIENL------ESLQKFEEIVEA- 329 (575)
Q Consensus 266 kD~~di~~al~~gvd~I~~Sf--V~sa~dv~~ir~~l~~~~~~~i~II-------aKIEt~------~av~nldeI~~~- 329 (575)
.+.++++.+++.|+|.|++.. ..+++.+.++.+.+. .++.+= .++... ..++-+++..+.
T Consensus 84 ~~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~~----~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g 159 (233)
T PRK00748 84 RSLETVEALLDAGVSRVIIGTAAVKNPELVKEACKKFP----GKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAG 159 (233)
T ss_pred CCHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHHHhC----CCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcC
Confidence 467888999999999987754 344555555544331 221110 011110 011112222222
Q ss_pred CCEEEEe-CCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcc-cceEEecc
Q 008172 330 SDGIMVA-RGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQY-ADALMLSG 406 (575)
Q Consensus 330 sDgImIa-RGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G-~D~vmLs~ 406 (575)
+|.+++- +.-=+...+ .++ +.+-+.++....|+|.+..+ -+.+ |+..+...| +|++|+..
T Consensus 160 ~~~ii~~~~~~~g~~~G-~d~----~~i~~l~~~~~ipvia~GGi---------~~~~---di~~~~~~g~~~gv~vg~ 221 (233)
T PRK00748 160 VKAIIYTDISRDGTLSG-PNV----EATRELAAAVPIPVIASGGV---------SSLD---DIKALKGLGAVEGVIVGR 221 (233)
T ss_pred CCEEEEeeecCcCCcCC-CCH----HHHHHHHHhCCCCEEEeCCC---------CCHH---HHHHHHHcCCccEEEEEH
Confidence 6766664 322222223 222 22223345567999986543 3444 445555567 99999973
No 277
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=53.93 E-value=1.8e+02 Score=29.44 Aligned_cols=118 Identities=18% Similarity=0.222 Sum_probs=67.9
Q ss_pred HHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHh-cCCEEEE-e-CCCCCCCCC
Q 008172 269 DDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVE-ASDGIMV-A-RGDLGVDIP 345 (575)
Q Consensus 269 ~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~-~sDgImI-a-RGDLg~e~~ 345 (575)
+.++.+.+.|+|+|.++-.. .|+..++.+.+++.|.+.+.+++ =.| -.+.++.|++ ..|.+.+ + .|--|.+-+
T Consensus 95 ~fi~~~~~aG~~giiipDl~-~ee~~~~~~~~~~~g~~~i~~i~-P~T--~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~ 170 (242)
T cd04724 95 RFLRDAKEAGVDGLIIPDLP-PEEAEEFREAAKEYGLDLIFLVA-PTT--PDERIKKIAELASGFIYYVSRTGVTGARTE 170 (242)
T ss_pred HHHHHHHHCCCcEEEECCCC-HHHHHHHHHHHHHcCCcEEEEeC-CCC--CHHHHHHHHhhCCCCEEEEeCCCCCCCccC
Confidence 45677889999999996553 47888888888887743333343 223 3566788888 4555443 4 233343332
Q ss_pred CCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 346 LEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 346 ~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
.. +...+.+-+......+|+.+..- .=+.+.+ ...... +|++...
T Consensus 171 ~~--~~~~~~i~~lr~~~~~pI~vggG---------I~~~e~~---~~~~~~-ADgvVvG 215 (242)
T cd04724 171 LP--DDLKELIKRIRKYTDLPIAVGFG---------ISTPEQA---AEVAKY-ADGVIVG 215 (242)
T ss_pred CC--hhHHHHHHHHHhcCCCcEEEEcc---------CCCHHHH---HHHHcc-CCEEEEC
Confidence 21 22333333333334899998542 3333333 344445 8887774
No 278
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=53.85 E-value=2.8e+02 Score=28.96 Aligned_cols=116 Identities=17% Similarity=0.070 Sum_probs=65.3
Q ss_pred CCCEEEecCc-----------CChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-------CCEEEE----
Q 008172 278 GVDFIAMSFV-----------CDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-------SDGIMV---- 335 (575)
Q Consensus 278 gvd~I~~SfV-----------~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-------sDgImI---- 335 (575)
++|+|-+.+= ++++.+.++-+.+.+. -++.|++||=--...+++.++++. +|||-+
T Consensus 119 ~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~--~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~ 196 (294)
T cd04741 119 FPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAA--YSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTL 196 (294)
T ss_pred cccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccC
Confidence 5888665432 2456666666666543 247899999322222234444442 355653
Q ss_pred ------e--CCC--C--CCCC----CCCChHHHHHHHHHHHHHcC--CCEEEehhhHHhhhcCCCCChhhHhhHHHHHHc
Q 008172 336 ------A--RGD--L--GVDI----PLEQIPTVQEIIIHVCRQLN--KPVIVASQLLESMVEYPTPTRAEVADVSEAVRQ 397 (575)
Q Consensus 336 ------a--RGD--L--g~e~----~~e~v~~~Qk~Ii~~c~~~g--KPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~ 397 (575)
. |.- | ...+ |..--+...+.+-+..++.+ .|+|-..-+. --.|+...++.
T Consensus 197 ~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~------------s~~da~e~l~a 264 (294)
T cd04741 197 GNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVL------------DGRGAFRMRLA 264 (294)
T ss_pred CccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCC------------CHHHHHHHHHc
Confidence 1 222 1 1111 11224555555555555553 8999866554 34678888899
Q ss_pred ccceEEeccC
Q 008172 398 YADALMLSGE 407 (575)
Q Consensus 398 G~D~vmLs~E 407 (575)
|||+||+..-
T Consensus 265 GA~~Vqv~ta 274 (294)
T cd04741 265 GASAVQVGTA 274 (294)
T ss_pred CCCceeEchh
Confidence 9999999843
No 279
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=53.52 E-value=29 Score=29.81 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=33.1
Q ss_pred cccccccCCCCEEEEeCCeeEEEEEEEECCeEEEEEecCeEec
Q 008172 198 AGFSEGIEVGDELVIDGGMASFEVIEKVGNDLRCKCTDPGVFL 240 (575)
Q Consensus 198 ~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~i~~~V~~gG~l~ 240 (575)
.++.+.+++||+|..-.|-.- +|.+++++.+..++..|..+.
T Consensus 32 ~~m~~~L~~Gd~VvT~gGi~G-~V~~i~d~~v~vei~~g~~i~ 73 (84)
T TIGR00739 32 KKLIESLKKGDKVLTIGGIIG-TVTKIAENTIVIELNDNTEIT 73 (84)
T ss_pred HHHHHhCCCCCEEEECCCeEE-EEEEEeCCEEEEEECCCeEEE
Confidence 467889999999999888654 678999998888776665553
No 280
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=53.15 E-value=2.2e+02 Score=29.54 Aligned_cols=122 Identities=9% Similarity=0.046 Sum_probs=70.6
Q ss_pred HHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhhh
Q 008172 355 IIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSRE 434 (575)
Q Consensus 355 ~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 434 (575)
-+...|+.+|.|+++.. |..+....+...-..|++.+...++ +.| -++.+..+++.++-..+
T Consensus 73 alA~~a~~~G~~~~i~~-----------p~~~~~~k~~~~~~~GA~v~~v~~~---~~~-~~~~~~a~~l~~~~~~~--- 134 (290)
T TIGR01138 73 ALAMIAALKGYRMKLLM-----------PDNMSQERKAAMRAYGAELILVTKE---EGM-EGARDLALELANRGEGK--- 134 (290)
T ss_pred HHHHHHHHcCCeEEEEE-----------CCCCCHHHHHHHHHcCCEEEEeCCC---CCh-HHHHHHHHHHHHhCCCC---
Confidence 45568999999999852 4443334445566799998877542 122 23433333332221111
Q ss_pred hhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcC--CcEEEEEcCChhHHHHH----hccCCCCcEEEEcCcH
Q 008172 435 ENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLG--VDAIFVYTKHGHMASLL----SRNRPNPPIFAFTNDD 504 (575)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--AkaIVVfT~SG~TAr~V----Sr~RP~~PIiAvT~~~ 504 (575)
+..+... +.++.--...-+.|+..+++ .++||+.+-+|.|+.-+ ..+.|...|+++-|..
T Consensus 135 --------~~~~~~~--~~~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~ 200 (290)
T TIGR01138 135 --------LLDQFNN--PDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEE 200 (290)
T ss_pred --------CCCccCC--cccHHHHhHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 1111111 11111112335567777775 68999999999876544 4468999999998754
No 281
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=53.02 E-value=1.7e+02 Score=30.15 Aligned_cols=98 Identities=17% Similarity=0.227 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCCEEEec------CcCChhhHHHHHHH-HhccCCCCceEEeeecC---HHHHhcHHHHHhc-CCEEEEe
Q 008172 268 WDDIEFGIAEGVDFIAMS------FVCDADSVRHLKKY-VSGKSSRSIKVLAKIEN---LESLQKFEEIVEA-SDGIMVA 336 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~S------fV~sa~dv~~ir~~-l~~~~~~~i~IIaKIEt---~~av~nldeI~~~-sDgImIa 336 (575)
.+.+++.++.|+|++++. +-=|.++=.++-+. ++..+ .++.||+-+-. .++++.....-+. +|++|+.
T Consensus 25 ~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~-~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~ 103 (289)
T PF00701_consen 25 KRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAA-GRVPVIAGVGANSTEEAIELARHAQDAGADAVLVI 103 (289)
T ss_dssp HHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHT-TSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEE
T ss_pred HHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHcc-CceEEEecCcchhHHHHHHHHHHHhhcCceEEEEe
Confidence 456678899999999874 22334444444333 33343 56889888854 5555555555444 8999987
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 337 RGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 337 RGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
+-.... ...+.+.. ..-+.|.+-+.|+++-
T Consensus 104 ~P~~~~-~s~~~l~~---y~~~ia~~~~~pi~iY 133 (289)
T PF00701_consen 104 PPYYFK-PSQEELID---YFRAIADATDLPIIIY 133 (289)
T ss_dssp ESTSSS-CCHHHHHH---HHHHHHHHSSSEEEEE
T ss_pred cccccc-chhhHHHH---HHHHHHhhcCCCEEEE
Confidence 553321 22233333 4444456678999975
No 282
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=52.87 E-value=1.7e+02 Score=29.06 Aligned_cols=104 Identities=18% Similarity=0.187 Sum_probs=68.9
Q ss_pred HHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCCCCC
Q 008172 269 DDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARGDLGVDIPLE 347 (575)
Q Consensus 269 ~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGDLg~e~~~e 347 (575)
+..+.+++.|+..+=+.+ +++...+.++.+..+.+ +. ++.=.=|.--.++.+..++. +|+++.+ .
T Consensus 26 ~~~~a~~~gGi~~iEvt~-~~~~~~~~i~~l~~~~~-~~--~~iGaGTV~~~~~~~~a~~aGA~fivsp---------~- 91 (206)
T PRK09140 26 AHVGALIEAGFRAIEIPL-NSPDPFDSIAALVKALG-DR--ALIGAGTVLSPEQVDRLADAGGRLIVTP---------N- 91 (206)
T ss_pred HHHHHHHHCCCCEEEEeC-CCccHHHHHHHHHHHcC-CC--cEEeEEecCCHHHHHHHHHcCCCEEECC---------C-
Confidence 334566789999999996 77777777777765543 22 11111122233456666666 8888873 2
Q ss_pred ChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEe
Q 008172 348 QIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALML 404 (575)
Q Consensus 348 ~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmL 404 (575)
.-..+++.|+..|.|++..+. | .+++..|...|+|.+.+
T Consensus 92 ----~~~~v~~~~~~~~~~~~~G~~-----------t---~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 92 ----TDPEVIRRAVALGMVVMPGVA-----------T---PTEAFAALRAGAQALKL 130 (206)
T ss_pred ----CCHHHHHHHHHCCCcEEcccC-----------C---HHHHHHHHHcCCCEEEE
Confidence 224678899999999996421 2 24568888999999987
No 283
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=52.32 E-value=25 Score=39.88 Aligned_cols=49 Identities=27% Similarity=0.405 Sum_probs=41.2
Q ss_pred ceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHH
Q 008172 91 TKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQ 139 (575)
Q Consensus 91 tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~ 139 (575)
-..=|.+|+.-...|-.++|+++|+|+.=++.+||...+..++++.||+
T Consensus 237 l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~ 285 (505)
T PLN02274 237 LLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKK 285 (505)
T ss_pred EEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 3344578887778999999999999999999999988877777877775
No 284
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=52.00 E-value=64 Score=32.83 Aligned_cols=68 Identities=12% Similarity=0.200 Sum_probs=46.1
Q ss_pred hHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEeh
Q 008172 292 SVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVAS 371 (575)
Q Consensus 292 dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaT 371 (575)
.+..+++.+.+.+ .++.|-+--+..+. +|++++++-.|.|+-+- +-+.....+-+.|+++++|++.+.
T Consensus 79 Ka~~a~~~l~~in-p~v~i~~~~~~i~~-~~~~~~~~~~DlVvd~~----------D~~~~r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 79 KVESAKDALTQIN-PHIAINPINAKLDD-AELAALIAEHDIVVDCT----------DNVEVRNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred HHHHHHHHHHHHC-CCcEEEEEeccCCH-HHHHHHhhcCCEEEEcC----------CCHHHHHHHHHHHHHcCCCEEEEE
Confidence 3455556666665 56665554333332 57888888899888862 224566778899999999999763
No 285
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=51.87 E-value=1.5e+02 Score=32.39 Aligned_cols=117 Identities=19% Similarity=0.125 Sum_probs=71.9
Q ss_pred HHcCCCEEEe---cCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc--CCEEEEeCCCCCCCC-----
Q 008172 275 IAEGVDFIAM---SFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA--SDGIMVARGDLGVDI----- 344 (575)
Q Consensus 275 l~~gvd~I~~---SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~--sDgImIaRGDLg~e~----- 344 (575)
+..|.|.+.- +...+++++.++-+.+++.. ....|+.|+=.....+.+...++. +|+|.|.=++=|...
T Consensus 180 ~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~-~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~ 258 (392)
T cd02808 180 IPPGVDLISPPPHHDIYSIEDLAQLIEDLREAT-GGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTF 258 (392)
T ss_pred CCCCccccCCCCCCCCCCHHHHHHHHHHHHHhC-CCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccc
Confidence 3445566543 34678888888777777665 336788888543233344444444 699999755433322
Q ss_pred ----CCCChHHHHHHHHHHHHHc----CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 345 ----PLEQIPTVQEIIIHVCRQL----NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 345 ----~~e~v~~~Qk~Ii~~c~~~----gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
+++.+ ....++.+.+.+. ..|++.+.-+- --.|++.++..|||++.+.
T Consensus 259 ~~~~g~pt~-~~L~~v~~~~~~~~~~~~i~viasGGI~------------~g~Dv~kalaLGAd~V~ig 314 (392)
T cd02808 259 IDHVGLPTE-LGLARAHQALVKNGLRDRVSLIASGGLR------------TGADVAKALALGADAVGIG 314 (392)
T ss_pred cccCCccHH-HHHHHHHHHHHHcCCCCCCeEEEECCCC------------CHHHHHHHHHcCCCeeeec
Confidence 22222 2333455555544 46888765443 3468999999999999885
No 286
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=51.79 E-value=38 Score=36.70 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=41.8
Q ss_pred CHHHHHHHHHcCCCEEEecCc------CChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc----CCEEEEe
Q 008172 267 DWDDIEFGIAEGVDFIAMSFV------CDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA----SDGIMVA 336 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~SfV------~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~----sDgImIa 336 (575)
..++.+.+.+.|+|+|.+|.- ..+..+..+.++....+ .++.||+- .||.+-.+|++. +|++|||
T Consensus 231 ~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~-~~i~vi~d----GGIr~g~Di~kaLalGA~~V~iG 305 (351)
T cd04737 231 SPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVN-HRVPIIFD----SGVRRGEHVFKALASGADAVAVG 305 (351)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhC-CCCeEEEE----CCCCCHHHHHHHHHcCCCEEEEC
Confidence 457888999999999999742 12222333333322222 34555553 455555555555 8999999
Q ss_pred CCCC
Q 008172 337 RGDL 340 (575)
Q Consensus 337 RGDL 340 (575)
|.=|
T Consensus 306 r~~l 309 (351)
T cd04737 306 RPVL 309 (351)
T ss_pred HHHH
Confidence 8544
No 287
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=51.76 E-value=3.7e+02 Score=30.41 Aligned_cols=148 Identities=18% Similarity=0.130 Sum_probs=90.7
Q ss_pred CCCccCHHHHHHHH-HcCCCEEEe----------cCcCChhhHHHHHHHHhccCCCCceE--EeeecCHHHHhc------
Q 008172 262 TLSKKDWDDIEFGI-AEGVDFIAM----------SFVCDADSVRHLKKYVSGKSSRSIKV--LAKIENLESLQK------ 322 (575)
Q Consensus 262 ~lsekD~~di~~al-~~gvd~I~~----------SfV~sa~dv~~ir~~l~~~~~~~i~I--IaKIEt~~av~n------ 322 (575)
+++..|+..|..++ +.|++.|=+ +|++ .+..+.++.+-+.. .++.+ ++.--|.-|..+
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~-e~p~e~l~~l~~~~--~~~~l~~l~r~~N~~G~~~~~dDvv 97 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLN-ENPWERLKEIRKRL--KNTKIQMLLRGQNLVGYRHYADDVV 97 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccC-CCHHHHHHHHHHhC--CCCEEEEEeccccccCcccccchhh
Confidence 57778876666555 589998744 5663 33444444443221 23333 334444444432
Q ss_pred ---HHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHc
Q 008172 323 ---FEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQ 397 (575)
Q Consensus 323 ---ldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~ 397 (575)
++.-++. .|.+-|. .+..++. -.++-++.++++|+-+..+ .++...|.=|.+.+.+++. +...
T Consensus 98 ~~fv~~A~~~Gvd~irif-------~~lnd~~-n~~~~i~~ak~~G~~v~~~----i~~t~~p~~t~e~~~~~a~~l~~~ 165 (467)
T PRK14041 98 ELFVKKVAEYGLDIIRIF-------DALNDIR-NLEKSIEVAKKHGAHVQGA----ISYTVSPVHTLEYYLEFARELVDM 165 (467)
T ss_pred HHHHHHHHHCCcCEEEEE-------EeCCHHH-HHHHHHHHHHHCCCEEEEE----EEeccCCCCCHHHHHHHHHHHHHc
Confidence 3333333 5766553 2333443 3456678999999877643 2555556557777777776 5667
Q ss_pred ccceEEeccCcCCCCCHHHHHHHHHHHH
Q 008172 398 YADALMLSGESAIGPFGQKAVSVLQMAS 425 (575)
Q Consensus 398 G~D~vmLs~ETa~G~yPveaV~~m~~I~ 425 (575)
|+|.+.|. +|+=.-.|.++-+.+..+-
T Consensus 166 Gad~I~i~-Dt~G~l~P~~v~~Lv~~lk 192 (467)
T PRK14041 166 GVDSICIK-DMAGLLTPKRAYELVKALK 192 (467)
T ss_pred CCCEEEEC-CccCCcCHHHHHHHHHHHH
Confidence 99999998 8888889998888777664
No 288
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=51.53 E-value=3.6e+02 Score=30.84 Aligned_cols=162 Identities=14% Similarity=0.135 Sum_probs=94.7
Q ss_pred CCCccCHHHHHHH-HHcCCCEEEecC-cCChhhHHHHHHHHhccCCCCceEEeeecC-HHHH-----hcHHHHHhc-CCE
Q 008172 262 TLSKKDWDDIEFG-IAEGVDFIAMSF-VCDADSVRHLKKYVSGKSSRSIKVLAKIEN-LESL-----QKFEEIVEA-SDG 332 (575)
Q Consensus 262 ~lsekD~~di~~a-l~~gvd~I~~Sf-V~sa~dv~~ir~~l~~~~~~~i~IIaKIEt-~~av-----~nldeI~~~-sDg 332 (575)
.+|..++..|-.. .+.|+|.|=+.| .-++.|.+.++.+.+.. .++..+.+-.-. ..++ ..++..+.. .|.
T Consensus 23 ~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~~-l~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~g~~~ 101 (524)
T PRK12344 23 SFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKELK-LKHAKLAAFGSTRRAGVSAEEDPNLQALLDAGTPV 101 (524)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHhC-CCCcEEEEEeeccccCCCcccHHHHHHHHhCCCCE
Confidence 4666776555544 569999998866 45777777766655321 123334332211 1112 123333443 455
Q ss_pred EEEe--CCCCC----CCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHcccceEEec
Q 008172 333 IMVA--RGDLG----VDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQYADALMLS 405 (575)
Q Consensus 333 ImIa--RGDLg----~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~G~D~vmLs 405 (575)
|-+. -.|+- .....+++...-+..++.++++|..|-+... ......+-+..-+.+++. +...|+|.+.|.
T Consensus 102 i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e---~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~ 178 (524)
T PRK12344 102 VTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAE---HFFDGYKANPEYALATLKAAAEAGADWVVLC 178 (524)
T ss_pred EEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccc---cccccccCCHHHHHHHHHHHHhCCCCeEEEc
Confidence 5443 22221 1122355666667889999999998865321 111122334444566655 446799999987
Q ss_pred cCcCCCCCHHHHHHHHHHHHHHH
Q 008172 406 GESAIGPFGQKAVSVLQMASSRM 428 (575)
Q Consensus 406 ~ETa~G~yPveaV~~m~~I~~~a 428 (575)
+|.=..+|.+.-++++.+.+..
T Consensus 179 -DTvG~~~P~~v~~li~~l~~~~ 200 (524)
T PRK12344 179 -DTNGGTLPHEVAEIVAEVRAAP 200 (524)
T ss_pred -cCCCCcCHHHHHHHHHHHHHhc
Confidence 8888899999988888776554
No 289
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=51.44 E-value=1.4e+02 Score=31.96 Aligned_cols=124 Identities=13% Similarity=0.121 Sum_probs=66.6
Q ss_pred CCCccCHHHH--------HHHHHcCCCEEEecC-------------cCChh------------hHHHHHHHHhcc-CCCC
Q 008172 262 TLSKKDWDDI--------EFGIAEGVDFIAMSF-------------VCDAD------------SVRHLKKYVSGK-SSRS 307 (575)
Q Consensus 262 ~lsekD~~di--------~~al~~gvd~I~~Sf-------------V~sa~------------dv~~ir~~l~~~-~~~~ 307 (575)
.+|..|++.+ +.|.+.|+|+|-+.+ .+... -+.++-+.+++. + .+
T Consensus 141 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg-~d 219 (338)
T cd02933 141 ALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIG-AD 219 (338)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhC-CC
Confidence 5777777665 477889999996643 33322 222333333322 3 33
Q ss_pred ceEEeeecCHH-------------HHhcHHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHH-cCCCEEEehh
Q 008172 308 IKVLAKIENLE-------------SLQKFEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQ-LNKPVIVASQ 372 (575)
Q Consensus 308 i~IIaKIEt~~-------------av~nldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~-~gKPvivaTq 372 (575)
.|..||-..+ .++-++.+.+. .|.|=|..|...... ...+....+..++ .+.||++...
T Consensus 220 -~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~-----~~~~~~~~~~ik~~~~ipvi~~G~ 293 (338)
T cd02933 220 -RVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP-----EDQPPDFLDFLRKAFKGPLIAAGG 293 (338)
T ss_pred -ceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc-----cccchHHHHHHHHHcCCCEEEECC
Confidence 3788884322 12222233222 688888777543222 1222233333333 4899998643
Q ss_pred hHHhhhcCCCCChhhHhhHHHHHHcc-cceEEec
Q 008172 373 LLESMVEYPTPTRAEVADVSEAVRQY-ADALMLS 405 (575)
Q Consensus 373 ~LeSM~~~p~PtrAEv~Dv~nav~~G-~D~vmLs 405 (575)
+ .|..+ ..++..| +|.|+++
T Consensus 294 i--------~~~~a-----~~~l~~g~~D~V~~g 314 (338)
T cd02933 294 Y--------DAESA-----EAALADGKADLVAFG 314 (338)
T ss_pred C--------CHHHH-----HHHHHcCCCCEEEeC
Confidence 2 13333 4566666 9999997
No 290
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=51.20 E-value=79 Score=31.10 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=45.5
Q ss_pred HHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 293 VRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 293 v~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
++.+++.+++.+ .++.+-+.-+... ++.++..+-.|.|+.+..+ +.....+-+.|+++|+|++.+
T Consensus 77 a~a~~~~L~~lN-p~v~i~~~~~~~~--~~~~~~~~~~dvVi~~~~~----------~~~~~~ln~~c~~~~ip~i~~ 141 (197)
T cd01492 77 AEASLERLRALN-PRVKVSVDTDDIS--EKPEEFFSQFDVVVATELS----------RAELVKINELCRKLGVKFYAT 141 (197)
T ss_pred HHHHHHHHHHHC-CCCEEEEEecCcc--ccHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 455566676666 5666655444433 4567777888999887433 356778889999999999875
No 291
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=51.06 E-value=2.7e+02 Score=28.00 Aligned_cols=140 Identities=11% Similarity=0.138 Sum_probs=94.7
Q ss_pred HHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCC-
Q 008172 268 WDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPL- 346 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~- 346 (575)
.+.+..-.+.|++.+.+ +++-.++..++.+.++++| -...+..|=+| .|+.++..++..|.++| .++|=|.
T Consensus 77 eq~V~~~a~agas~~tf-H~E~~q~~~~lv~~ir~~G-mk~G~alkPgT--~Ve~~~~~~~~~D~vLv----MtVePGFG 148 (224)
T KOG3111|consen 77 EQWVDQMAKAGASLFTF-HYEATQKPAELVEKIREKG-MKVGLALKPGT--PVEDLEPLAEHVDMVLV----MTVEPGFG 148 (224)
T ss_pred HHHHHHHHhcCcceEEE-EEeeccCHHHHHHHHHHcC-CeeeEEeCCCC--cHHHHHHhhccccEEEE----EEecCCCc
Confidence 45566667889998755 3455577888889998887 45677777777 57888888888999988 3444443
Q ss_pred --CChHHHHHHHHHHHHHcCCCEE-EehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHH
Q 008172 347 --EQIPTVQEIIIHVCRQLNKPVI-VASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQM 423 (575)
Q Consensus 347 --e~v~~~Qk~Ii~~c~~~gKPvi-vaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~ 423 (575)
.=++....++-+.-.++.++.| +-.- + .| +-+..+...||+++.-..-.---.-|-++++.|+.
T Consensus 149 GQkFme~mm~KV~~lR~kyp~l~ievDGG-v-------~~-----~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~ 215 (224)
T KOG3111|consen 149 GQKFMEDMMPKVEWLREKYPNLDIEVDGG-V-------GP-----STIDKAAEAGANMIVAGSAVFGAADPSDVISLLRN 215 (224)
T ss_pred hhhhHHHHHHHHHHHHHhCCCceEEecCC-c-------Cc-----chHHHHHHcCCCEEEecceeecCCCHHHHHHHHHH
Confidence 2233344455555568888888 3211 1 22 33466778899998876444445678899999888
Q ss_pred HHHHH
Q 008172 424 ASSRM 428 (575)
Q Consensus 424 I~~~a 428 (575)
.++.+
T Consensus 216 ~v~~a 220 (224)
T KOG3111|consen 216 SVEKA 220 (224)
T ss_pred HHhhh
Confidence 76544
No 292
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=50.98 E-value=47 Score=34.04 Aligned_cols=173 Identities=19% Similarity=0.283 Sum_probs=88.8
Q ss_pred ceEEeeecCHHHHhcHHHHHhc-----CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHH-HcCCCEEEehhhHHhhhcCC
Q 008172 308 IKVLAKIENLESLQKFEEIVEA-----SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCR-QLNKPVIVASQLLESMVEYP 381 (575)
Q Consensus 308 i~IIaKIEt~~av~nldeI~~~-----sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~-~~gKPvivaTq~LeSM~~~p 381 (575)
..=+.||.=..- ++.++|++. .|+|||| |=+|++. ......+++++ +.+.|++.
T Consensus 16 ~~H~tliDP~k~-~~~~ei~~~~~~~GTDaImIG-GS~gvt~------~~~~~~v~~ik~~~~lPvil------------ 75 (240)
T COG1646 16 KRHLTLIDPDKT-EEADEIAEAAAEAGTDAIMIG-GSDGVTE------ENVDNVVEAIKERTDLPVIL------------ 75 (240)
T ss_pred ceEEEEeCcccc-cccHHHHHHHHHcCCCEEEEC-CcccccH------HHHHHHHHHHHhhcCCCEEE------------
Confidence 344556633222 555665554 7999998 5444433 33456777788 89999997
Q ss_pred CCChhhHhhHHHHHHcccceEEe-----ccCc--CCCCCHHHHHHHHHHHHHH--HhhhhhhhhhHHhhhcccccCC-C-
Q 008172 382 TPTRAEVADVSEAVRQYADALML-----SGES--AIGPFGQKAVSVLQMASSR--MELWSREENRQSALCGQRQLGE-S- 450 (575)
Q Consensus 382 ~PtrAEv~Dv~nav~~G~D~vmL-----s~ET--a~G~yPveaV~~m~~I~~~--aE~~~~~~~~~~~~~~~~~~~~-~- 450 (575)
.|.-- . -+..++|+++. |..+ -+| ..+++++...++..+ .|.|.--..- . ....... +
T Consensus 76 fP~~~-----~-~is~~aDavff~svLNS~n~~~i~g-aq~~~a~~~~~~~~e~i~~gYiV~~p~-~---~va~v~~A~~ 144 (240)
T COG1646 76 FPGSP-----S-GISPYADAVFFPSVLNSDNPYWIVG-AQVEGAKLVGKLGLEVIPEGYIVVNPD-G---TVAWVGKAKP 144 (240)
T ss_pred ecCCh-----h-ccCccCCeEEEEEEecCCCcccccc-hhhhhhHHHHhhhheecceEEEEECCC-C---ceeeeccccc
Confidence 34332 2 23458888765 2222 123 234455544444322 1111100000 0 0000000 1
Q ss_pred CCCchhhHHHHHHHHHHHhcCCcEEEEEcCChh----HHHHHhccCCCCcEEEE--cCcHHHHHHhcc
Q 008172 451 LHDRIAEQICNCAVDMANNLGVDAIFVYTKHGH----MASLLSRNRPNPPIFAF--TNDDSTRMALNL 512 (575)
Q Consensus 451 ~~~~~~~~ia~~av~~a~~~~AkaIVVfT~SG~----TAr~VSr~RP~~PIiAv--T~~~~~aR~L~L 512 (575)
.+.+ .+-++..+..+++-++-..+-+=--||. -...+++.....|++.. -++...||++..
T Consensus 145 ip~~-~~~iaa~y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~v~~~~~LivGGGIrs~E~A~~~a~ 211 (240)
T COG1646 145 IPLD-KEDIAAYYALAEKYLGMPVVYLEAGSGAGDPVPVEMVSRVLSDTPLIVGGGIRSPEQAREMAE 211 (240)
T ss_pred CCCC-cHHHHHHHHHHHHHhCCeEEEEEecCCCCCCcCHHHHHHhhccceEEEcCCcCCHHHHHHHHH
Confidence 1222 2446666666676778885444444443 33466666666666654 477777777754
No 293
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=50.48 E-value=25 Score=42.12 Aligned_cols=90 Identities=17% Similarity=0.192 Sum_probs=66.3
Q ss_pred CEEEecCcCChhhHHHHHHHHhccCC-------CCceEEeeecCHHHHhcHHHHHhc------------C----CEEEEe
Q 008172 280 DFIAMSFVCDADSVRHLKKYVSGKSS-------RSIKVLAKIENLESLQKFEEIVEA------------S----DGIMVA 336 (575)
Q Consensus 280 d~I~~SfV~sa~dv~~ir~~l~~~~~-------~~i~IIaKIEt~~av~nldeI~~~------------s----DgImIa 336 (575)
.-.++|+.+++.|+.++--+.++.|. ..+.|+.=.||.+.++|-.+|++. . =-||+|
T Consensus 365 ~~yIISmt~~~sdvL~v~~L~k~~gl~~~~~~~~~l~vvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~~~~QeVMlG 444 (794)
T PF00311_consen 365 GRYIISMTESASDVLEVLLLAKEAGLADGGDGGCRLDVVPLFETIDDLENAPDIMEELLSNPAYRAHLKARGNRQEVMLG 444 (794)
T ss_dssp EEEEECT--SCHHHHHHHHHHHCTT---SS---S---EEEEE-SHHHHHCHHHHHHHHCCSHHHHHHCTT---EEEEEEE
T ss_pred HHheeeCCCChHHHHHHHHHHHHhCCCcccccccccCCCCCCCCHHHHHhHHHHHHHHHcCHHHHHHHhcCcceEEEEec
Confidence 34689999999999999888777653 247899999999999999999876 1 268998
Q ss_pred CCCCCCCCCC----CChHHHHHHHHHHHHHcCCCEEE
Q 008172 337 RGDLGVDIPL----EQIPTVQEIIIHVCRQLNKPVIV 369 (575)
Q Consensus 337 RGDLg~e~~~----e~v~~~Qk~Ii~~c~~~gKPviv 369 (575)
-.|=+=+-|. =.+..+|+.+.+.|+++|..+.+
T Consensus 445 YSDS~KDgG~laa~w~ly~Aq~~L~~v~~~~gV~l~~ 481 (794)
T PF00311_consen 445 YSDSNKDGGYLAANWALYKAQEALVAVARKHGVKLRF 481 (794)
T ss_dssp CCCHHHHC-HHHHHHHHHHHHHHHHHHHHCCT-EEEE
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 6664444443 35889999999999999998876
No 294
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=50.40 E-value=71 Score=35.49 Aligned_cols=215 Identities=13% Similarity=0.174 Sum_probs=116.0
Q ss_pred CceEEEecCCCCCCHHHHHHHHHcCCc-EEEeeCCCC-----CHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCeEEEEe
Q 008172 90 KTKMVCTIGPACCSMEDLEKLAMGGMN-VARLNMCHN-----TREWHLDVIRKIKQLNHEKLFCISVMIDTEGSQIHVVD 163 (575)
Q Consensus 90 ~tkIi~TiGPas~~~e~l~~li~~G~~-v~RlN~SHg-----~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~GpkIRtG~ 163 (575)
.|+|-++ ..+|+.|++.|.. +. =+||- ..+....+-...+.+++-++.+|...-|.-||+.+-
T Consensus 38 d~RI~~~-------lpTI~~L~~~gak~vv--l~SHlGRP~g~~~~~~SL~~va~~L~~lL~~~V~fv~d~~g~~~~~-- 106 (417)
T PTZ00005 38 ATRIKAT-------LPTIKYLLEQGAKSVV--LMSHLGRPDGRRVEKYSLKPVVPKLEELLGKKVTFLNDCVGPEVEE-- 106 (417)
T ss_pred hHhHHHH-------HHHHHHHHHCCCCEEE--EEecCCCCCCCcCcccCHHHHHHHHHHHHCCCeEECCCCCCHHHHH--
Confidence 4555555 4689999999986 53 36783 222122333334445667889998888998987541
Q ss_pred cCCCCceEEecCCEEEEEeeccCCCCCc-E-----EEe-ccc----ccccccCCCCEEEEeCCeeEEEEEEEECCeEEEE
Q 008172 164 HGEPNSVKVEEDSIWLFTAIKFEGSRPF-T-----VKA-NYA----GFSEGIEVGDELVIDGGMASFEVIEKVGNDLRCK 232 (575)
Q Consensus 164 ~~~~~~i~l~~G~~v~lt~~~~~~~~~~-~-----i~v-~~~----~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~i~~~ 232 (575)
..-.+++|+.+.|.+-.+...... . ... |-+ .|.+.+..--.||++|.-=
T Consensus 107 ----~i~~l~~GeVlLLENvRF~~~Ee~~~~~~~~~~~~~d~~~~~~fa~~LA~l~DiyVNDAFg--------------- 167 (417)
T PTZ00005 107 ----ACANAKNGSVILLENLRFHIEEEGKGVDANGNKVKADKEEVKKFRKSLTKLGDIYVNDAFG--------------- 167 (417)
T ss_pred ----HHHcCCCCCEEEEeccccccccccccccccccccCCCHHHHHHHHHHHHhhCCEEEecchh---------------
Confidence 112467888888865444321110 0 000 111 2666555533488888311
Q ss_pred EecCeEecCCcccccccCcccccccccCCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEE-
Q 008172 233 CTDPGVFLPRAKLSFRRNGILVERNHGLPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVL- 311 (575)
Q Consensus 233 V~~gG~l~s~K~vn~~r~g~~~~~~~~lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~II- 311 (575)
.+|+. +- ..+.+|.. .....+.++ .++..+.+.+..-...-+.|+
T Consensus 168 -------~aHR~-------ha--S~~gi~~~----~s~aG~lme--------------kEl~~L~~~~~~p~rP~vaIlG 213 (417)
T PTZ00005 168 -------TAHRA-------HS--SMVGVDLP----VKVAGFLMK--------------KELDYFSKALENPQRPFLAILG 213 (417)
T ss_pred -------hhhhh-------cc--cccccCCc----cchhhHHHH--------------HHHHHHHHHhcCCCCceEEEEc
Confidence 00000 00 00111110 011122222 456666666643211123344
Q ss_pred -eeecCHHHHhcHHHHHhcCCEEEEeCC--------CCCCCCCC----CChHHHHHHHHHHHHHcCCCEEEe
Q 008172 312 -AKIENLESLQKFEEIVEASDGIMVARG--------DLGVDIPL----EQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 312 -aKIEt~~av~nldeI~~~sDgImIaRG--------DLg~e~~~----e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
||+.+.-++ ++.++..+|.|++|=| .-|.++|- ++.-..-++|++.|...|+++++-
T Consensus 214 GaKvsdKi~v--l~~Ll~k~D~iligG~ma~tFL~A~~G~~iG~sl~E~~~i~~a~~il~~a~~~~~~I~lP 283 (417)
T PTZ00005 214 GAKVADKIQL--IKNLLDKVDEMIIGGGMAFTFKKVLDNMPIGKSLFDEEGAKIVKEIMEKAKEKNVKIHLP 283 (417)
T ss_pred CccHHhHHHH--HHHHHHhcCEEEECcHHHHHHHHHhCCCccCccccChhhHHHHHHHHHHHHhcCCEEeCC
Confidence 577664443 7778888999998722 23444543 455556679999999999988863
No 295
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=50.29 E-value=48 Score=29.48 Aligned_cols=52 Identities=13% Similarity=0.193 Sum_probs=37.4
Q ss_pred CCcEEEEEcCChhHHH-----HHhccCCCCcEEEEcCcHHHHHHhcccCCcEEEEecCC
Q 008172 471 GVDAIFVYTKHGHMAS-----LLSRNRPNPPIFAFTNDDSTRMALNLQWGVIPVLVNLS 524 (575)
Q Consensus 471 ~AkaIVVfT~SG~TAr-----~VSr~RP~~PIiAvT~~~~~aR~L~L~~GV~Pvl~~~~ 524 (575)
.-+.+|++|.||.|.. ..+|.| .+||+++|.+..+++ +.-.||..-+.++..
T Consensus 43 ~~dl~I~iS~SG~t~e~i~~~~~a~~~-g~~iI~IT~~~~l~~-~~~~~~~~~~~~p~~ 99 (119)
T cd05017 43 RKTLVIAVSYSGNTEETLSAVEQAKER-GAKIVAITSGGKLLE-MAREHGVPVIIIPKG 99 (119)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC-CCEEEEEeCCchHHH-HHHHcCCcEEECCCC
Confidence 3478999999999654 344445 589999998876444 666678777776643
No 296
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.20 E-value=68 Score=33.54 Aligned_cols=65 Identities=11% Similarity=0.254 Sum_probs=46.8
Q ss_pred CHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHH--HhcHHHHHhc-CCEEEEeC
Q 008172 267 DWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLES--LQKFEEIVEA-SDGIMVAR 337 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~a--v~nldeI~~~-sDgImIaR 337 (575)
..+..+.|+++|+|+|.+-.. ++++++++.+.+.... .++.+.| --| .+|+.++++. +|+|-+|.
T Consensus 191 tleea~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~-~~~~ieA----sGgIt~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 191 SLEEAKNAMNAGADIVMCDNM-SVEEIKEVVAYRNANY-PHVLLEA----SGNITLENINAYAKSGVDAISSGS 258 (273)
T ss_pred CHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccC-CCeEEEE----ECCCCHHHHHHHHHcCCCEEEeCh
Confidence 477888899999999999775 8888888888764332 3444433 223 3577777777 89999964
No 297
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=50.01 E-value=36 Score=33.86 Aligned_cols=106 Identities=17% Similarity=0.228 Sum_probs=57.4
Q ss_pred HHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCCCCCChHH
Q 008172 273 FGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARGDLGVDIPLEQIPT 351 (575)
Q Consensus 273 ~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGDLg~e~~~e~v~~ 351 (575)
-.++.|+..+=+.| +++.-.+.++.+-.+. +++.| =.=|..-.+..+..++. ++-++ . |.
T Consensus 28 al~~gGi~~iEiT~-~t~~a~~~I~~l~~~~--p~~~v--GAGTV~~~e~a~~a~~aGA~Fiv-S-------------P~ 88 (196)
T PF01081_consen 28 ALIEGGIRAIEITL-RTPNALEAIEALRKEF--PDLLV--GAGTVLTAEQAEAAIAAGAQFIV-S-------------PG 88 (196)
T ss_dssp HHHHTT--EEEEET-TSTTHHHHHHHHHHHH--TTSEE--EEES--SHHHHHHHHHHT-SEEE-E-------------SS
T ss_pred HHHHCCCCEEEEec-CCccHHHHHHHHHHHC--CCCee--EEEeccCHHHHHHHHHcCCCEEE-C-------------CC
Confidence 34577888888877 5555444444433332 22221 22222233344444444 44333 2 23
Q ss_pred HHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCC
Q 008172 352 VQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIG 411 (575)
Q Consensus 352 ~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G 411 (575)
.-+++++.|+++|.|++= --.=-+++..|...|+|.+=|=--...|
T Consensus 89 ~~~~v~~~~~~~~i~~iP--------------G~~TptEi~~A~~~G~~~vK~FPA~~~G 134 (196)
T PF01081_consen 89 FDPEVIEYAREYGIPYIP--------------GVMTPTEIMQALEAGADIVKLFPAGALG 134 (196)
T ss_dssp --HHHHHHHHHHTSEEEE--------------EESSHHHHHHHHHTT-SEEEETTTTTTT
T ss_pred CCHHHHHHHHHcCCcccC--------------CcCCHHHHHHHHHCCCCEEEEecchhcC
Confidence 457899999999999982 2223456789999999999885444444
No 298
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=49.93 E-value=1.8e+02 Score=30.02 Aligned_cols=119 Identities=14% Similarity=0.218 Sum_probs=71.1
Q ss_pred HHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhh
Q 008172 354 EIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSR 433 (575)
Q Consensus 354 k~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 433 (575)
.-+...|+..|.++++.. |....-.-+...-..|++.+...+ .| -++.+...++.++- .++
T Consensus 78 ~alA~~a~~~G~~~~ivv-----------p~~~~~~k~~~l~~~Ga~vi~~~~-----~~-~~~~~~a~~la~~~-~~~- 138 (304)
T cd01562 78 QGVAYAAKLLGIPATIVM-----------PETAPAAKVDATRAYGAEVVLYGE-----DF-DEAEAKARELAEEE-GLT- 138 (304)
T ss_pred HHHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHHcCCEEEEeCC-----CH-HHHHHHHHHHHHhc-CCE-
Confidence 356678999999999852 222222334567789999777764 23 34544444333221 111
Q ss_pred hhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcC-CcEEEEEcCChhHHHHHhcc----CCCCcEEEEcCc
Q 008172 434 EENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLG-VDAIFVYTKHGHMASLLSRN----RPNPPIFAFTND 503 (575)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~-AkaIVVfT~SG~TAr~VSr~----RP~~PIiAvT~~ 503 (575)
...+... +. ........+.++..+++ .+.||+.+-||.|..-++++ .|...|+++.+.
T Consensus 139 ---------~~~~~~n--~~-~~~g~~~~~~Ei~~q~~~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~ 201 (304)
T cd01562 139 ---------FIHPFDD--PD-VIAGQGTIGLEILEQVPDLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPE 201 (304)
T ss_pred ---------EeCCCCC--cc-hhccHHHHHHHHHHhcCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 1111111 11 12223444677777774 68999999999987766554 788999999884
No 299
>PLN02535 glycolate oxidase
Probab=49.36 E-value=32 Score=37.49 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=44.0
Q ss_pred CHHHHHHHHHcCCCEEEecCc---------CChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc----CCEE
Q 008172 267 DWDDIEFGIAEGVDFIAMSFV---------CDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA----SDGI 333 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~SfV---------~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~----sDgI 333 (575)
+.++.+.+.+.|+|+|.+|.. .+.+-+.++++.+. .++.||+- .||.+-.+|++. +|++
T Consensus 233 ~~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~----~~ipVi~d----GGIr~g~Dv~KALalGA~aV 304 (364)
T PLN02535 233 TREDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVG----GRVPVLLD----GGVRRGTDVFKALALGAQAV 304 (364)
T ss_pred CHHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHh----cCCCEEee----CCCCCHHHHHHHHHcCCCEE
Confidence 457788999999999999832 22344444444332 23556542 577777777666 8999
Q ss_pred EEeCCCC
Q 008172 334 MVARGDL 340 (575)
Q Consensus 334 mIaRGDL 340 (575)
+|||.=|
T Consensus 305 ~vGr~~l 311 (364)
T PLN02535 305 LVGRPVI 311 (364)
T ss_pred EECHHHH
Confidence 9998765
No 300
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=49.02 E-value=52 Score=34.12 Aligned_cols=67 Identities=16% Similarity=0.299 Sum_probs=48.5
Q ss_pred CCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHH--HhcHHHHHhc-CCEEEEe
Q 008172 263 LSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLES--LQKFEEIVEA-SDGIMVA 336 (575)
Q Consensus 263 lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~a--v~nldeI~~~-sDgImIa 336 (575)
++-.+.+.+..+++.|+|+|.+-.+ ++++++++.+.++.. .++. ||=--| .+|+.++++. +|+|-++
T Consensus 186 vev~t~eea~~A~~~gaD~I~ld~~-~~e~l~~~v~~i~~~--~~i~----i~asGGIt~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 186 VEVETLEEAEEALEAGADIIMLDNM-SPEELKEAVKLLKGL--PRVL----LEASGGITLENIRAYAETGVDVISTG 255 (269)
T ss_pred EecCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhccC--CCeE----EEEECCCCHHHHHHHHHcCCCEEEEc
Confidence 3445678888899999999999776 668888888777532 2333 333333 4789999988 9999874
No 301
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=48.86 E-value=1.8e+02 Score=30.48 Aligned_cols=48 Identities=25% Similarity=0.313 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHc-CCCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHcccceEEecc
Q 008172 349 IPTVQEIIIHVCRQL-NKPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQYADALMLSG 406 (575)
Q Consensus 349 v~~~Qk~Ii~~c~~~-gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~G~D~vmLs~ 406 (575)
-+..-.+|+++.++. .+|+.+= -+|.-.++.+++. +...|+|++.+++
T Consensus 152 ~~~~~~~iv~~v~~~~~~Pv~vK----------l~~~~~~~~~~a~~~~~~Gadgi~~~N 201 (299)
T cd02940 152 DPELVEEICRWVREAVKIPVIAK----------LTPNITDIREIARAAKEGGADGVSAIN 201 (299)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEE----------CCCCchhHHHHHHHHHHcCCCEEEEec
Confidence 356667888888764 7999973 2455556767777 5677999999875
No 302
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=48.77 E-value=3.4e+02 Score=29.11 Aligned_cols=132 Identities=18% Similarity=0.176 Sum_probs=68.2
Q ss_pred CCCccCHHHH--------HHHHHcCCCEEEecC-------------cCCh------------hhHHHHHHHHhccCCCCc
Q 008172 262 TLSKKDWDDI--------EFGIAEGVDFIAMSF-------------VCDA------------DSVRHLKKYVSGKSSRSI 308 (575)
Q Consensus 262 ~lsekD~~di--------~~al~~gvd~I~~Sf-------------V~sa------------~dv~~ir~~l~~~~~~~i 308 (575)
.||..|++.+ +.|.+.|+|+|=+.. ++.. .-+.++-+.+++.-+.+.
T Consensus 130 ~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~ 209 (343)
T cd04734 130 AMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDF 209 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCC
Confidence 5777777655 577889999995544 3332 122233333333212344
Q ss_pred eEEeeecC----------HHHHhcHHHHHhc--CCEEEEeCCCCCCC------CCC-CChHHHHHHHHHHHHH-cCCCEE
Q 008172 309 KVLAKIEN----------LESLQKFEEIVEA--SDGIMVARGDLGVD------IPL-EQIPTVQEIIIHVCRQ-LNKPVI 368 (575)
Q Consensus 309 ~IIaKIEt----------~~av~nldeI~~~--sDgImIaRGDLg~e------~~~-e~v~~~Qk~Ii~~c~~-~gKPvi 368 (575)
.|..+|-- .++++-++.+.+. .|.|=|..|-..-. .+. ..-+..+...++..++ .+.||+
T Consensus 210 ~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi 289 (343)
T cd04734 210 IVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVF 289 (343)
T ss_pred eEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEE
Confidence 44455421 3444444555554 68898866544321 111 0011122334444443 488999
Q ss_pred EehhhHHhhhcCCCCChhhHhhHHHHHHcc-cceEEec
Q 008172 369 VASQLLESMVEYPTPTRAEVADVSEAVRQY-ADALMLS 405 (575)
Q Consensus 369 vaTq~LeSM~~~p~PtrAEv~Dv~nav~~G-~D~vmLs 405 (575)
+...+ -|.++ .-.++.+| +|+||+.
T Consensus 290 ~~G~i---------~~~~~---~~~~l~~~~~D~V~~g 315 (343)
T cd04734 290 HAGRI---------RDPAE---AEQALAAGHADMVGMT 315 (343)
T ss_pred eeCCC---------CCHHH---HHHHHHcCCCCeeeec
Confidence 85543 23333 34456655 9999996
No 303
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=48.64 E-value=32 Score=38.58 Aligned_cols=69 Identities=16% Similarity=0.319 Sum_probs=42.1
Q ss_pred cCHHHHHHHHHcCCCEEEecC------cCChhhHHHHHHHHhccCCCCceEEe--eecCHHHHhcHHHHHhcCCEEEEeC
Q 008172 266 KDWDDIEFGIAEGVDFIAMSF------VCDADSVRHLKKYVSGKSSRSIKVLA--KIENLESLQKFEEIVEASDGIMVAR 337 (575)
Q Consensus 266 kD~~di~~al~~gvd~I~~Sf------V~sa~dv~~ir~~l~~~~~~~i~IIa--KIEt~~av~nldeI~~~sDgImIaR 337 (575)
++.++++.|++.|++.|.+.. --+.+...++..++. +++.+|+ =|.|++-+..+. ..+||++||-
T Consensus 167 h~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip----~~~~~vseSGI~t~~d~~~~~---~~~davLiG~ 239 (454)
T PRK09427 167 SNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLIP----ADVIVISESGIYTHAQVRELS---PFANGFLIGS 239 (454)
T ss_pred CCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCC----CCcEEEEeCCCCCHHHHHHHH---hcCCEEEECH
Confidence 678899999999999999875 223333444444442 3444554 344444433332 2389999985
Q ss_pred CCCC
Q 008172 338 GDLG 341 (575)
Q Consensus 338 GDLg 341 (575)
.-+.
T Consensus 240 ~lm~ 243 (454)
T PRK09427 240 SLMA 243 (454)
T ss_pred HHcC
Confidence 5443
No 304
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=48.59 E-value=2e+02 Score=30.31 Aligned_cols=115 Identities=15% Similarity=0.232 Sum_probs=66.6
Q ss_pred HHHHHHHcCCCEEEec---------------CcCChhhHHHHHHHHhccCCCCceEEeeecCH------HHHhcHHHHHh
Q 008172 270 DIEFGIAEGVDFIAMS---------------FVCDADSVRHLKKYVSGKSSRSIKVLAKIENL------ESLQKFEEIVE 328 (575)
Q Consensus 270 di~~al~~gvd~I~~S---------------fV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~------~av~nldeI~~ 328 (575)
.++...+.|+.+|.+= .|...+-+..++.....+...+..|+|..|.. ++++....-.+
T Consensus 93 tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~ 172 (285)
T TIGR02317 93 TVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVE 172 (285)
T ss_pred HHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHH
Confidence 3455566677666551 23344556666666655444568999999985 45555555555
Q ss_pred c-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 329 A-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 329 ~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
. +|+||+- | +.... .+-+.+++..+|+.+ +|++. -.+|..+.+|+. ..|+.-+...
T Consensus 173 AGAD~vfi~-g-------~~~~e----~i~~~~~~i~~Pl~~--n~~~~-~~~p~~s~~eL~------~lGv~~v~~~ 229 (285)
T TIGR02317 173 AGADMIFPE-A-------LTSLE----EFRQFAKAVKVPLLA--NMTEF-GKTPLFTADELR------EAGYKMVIYP 229 (285)
T ss_pred cCCCEEEeC-C-------CCCHH----HHHHHHHhcCCCEEE--EeccC-CCCCCCCHHHHH------HcCCcEEEEc
Confidence 5 8999993 2 22222 233445555689853 23321 123445655544 5788877653
No 305
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=48.35 E-value=1.5e+02 Score=30.81 Aligned_cols=94 Identities=18% Similarity=0.075 Sum_probs=53.3
Q ss_pred HHHHHHHHcCCCEEEec------CcCChhhHHHHHHHHhccCCCCceEEeeec---CHHHHhcHHHHHhc-CCEEEEeCC
Q 008172 269 DDIEFGIAEGVDFIAMS------FVCDADSVRHLKKYVSGKSSRSIKVLAKIE---NLESLQKFEEIVEA-SDGIMVARG 338 (575)
Q Consensus 269 ~di~~al~~gvd~I~~S------fV~sa~dv~~ir~~l~~~~~~~i~IIaKIE---t~~av~nldeI~~~-sDgImIaRG 338 (575)
+.++|.++.|+|+|++. +-=|.++-.++-+...+.. . .||+-+- +.++++-...--+. +|++|+.+-
T Consensus 24 ~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~-~--~vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P 100 (279)
T cd00953 24 KHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT-D--KVIFQVGSLNLEESIELARAAKSFGIYAIASLPP 100 (279)
T ss_pred HHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc-C--CEEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 44578889999999873 3345555555544333332 2 2677774 33444444444444 799999755
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 339 DLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 339 DLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
..-...+.+.+....+.+.+ ..|+++.
T Consensus 101 ~y~~~~~~~~i~~yf~~v~~-----~lpv~iY 127 (279)
T cd00953 101 YYFPGIPEEWLIKYFTDISS-----PYPTFIY 127 (279)
T ss_pred cCCCCCCHHHHHHHHHHHHh-----cCCEEEE
Confidence 43221122344444455544 7898864
No 306
>PRK07334 threonine dehydratase; Provisional
Probab=48.15 E-value=1.9e+02 Score=31.63 Aligned_cols=119 Identities=13% Similarity=0.110 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhhh
Q 008172 355 IIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSRE 434 (575)
Q Consensus 355 ~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 434 (575)
-+...|+..|.|+++. .|..+.-..+...-..|++.++.. ...-++++...++.++...+
T Consensus 85 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~v~~~~------~~~~~~~~~a~~l~~~~~~~--- 144 (403)
T PRK07334 85 GVAYHAQRLGIPATIV-----------MPRFTPTVKVERTRGFGAEVVLHG------ETLDEARAHARELAEEEGLT--- 144 (403)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEEC------cCHHHHHHHHHHHHHhcCCE---
Confidence 5567899999999984 233333344456677999998653 23455666555543321111
Q ss_pred hhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcC-CcEEEEEcCChhHHHHHhc----cCCCCcEEEEcCcH
Q 008172 435 ENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLG-VDAIFVYTKHGHMASLLSR----NRPNPPIFAFTNDD 504 (575)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~-AkaIVVfT~SG~TAr~VSr----~RP~~PIiAvT~~~ 504 (575)
+..+... + ...+....-+.|+..+++ .+.||+..-+|.|+--+++ ++|...|+++-|..
T Consensus 145 --------~~~~~~~--~-~~~~g~~t~~~Ei~~q~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~ 208 (403)
T PRK07334 145 --------FVHPYDD--P-AVIAGQGTVALEMLEDAPDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTEL 208 (403)
T ss_pred --------ecCCCCC--H-HHHHhHHHHHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 1111111 1 122333445666666664 5899999999997665555 58999999998854
No 307
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=47.87 E-value=2.9e+02 Score=27.34 Aligned_cols=97 Identities=14% Similarity=0.228 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHh-cCCcEEEEEcCChh--HHHHHh-----cc---CCCCcEEEEcCcHHHH--------------HHh-
Q 008172 457 EQICNCAVDMANN-LGVDAIFVYTKHGH--MASLLS-----RN---RPNPPIFAFTNDDSTR--------------MAL- 510 (575)
Q Consensus 457 ~~ia~~av~~a~~-~~AkaIVVfT~SG~--TAr~VS-----r~---RP~~PIiAvT~~~~~a--------------R~L- 510 (575)
+.+..++-.++.. .+++-|+++-..|+ +|+-++ +| ||..|.++++.+..+. |||
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql~ 104 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVR 104 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHHH
Confidence 4555555555554 36677888876555 566555 23 9999999998766543 444
Q ss_pred -cccCCcEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCC
Q 008172 511 -NLQWGVIPVLVNLSDDMETNIAKTIDLIKMKGMVKYGDAVLVVLDLTPA 559 (575)
Q Consensus 511 -~L~~GV~Pvl~~~~~d~d~~i~~al~~~~~~g~~k~GD~VVvv~G~~~~ 559 (575)
.+..|=.-+.+..+-+.++ +..+++.++++ |-++|.++|.+.+
T Consensus 105 ~~~~~gDvli~iS~SG~s~~-v~~a~~~Ak~~-----G~~vI~IT~~~~s 148 (196)
T PRK10886 105 ALGHAGDVLLAISTRGNSRD-IVKAVEAAVTR-----DMTIVALTGYDGG 148 (196)
T ss_pred HcCCCCCEEEEEeCCCCCHH-HHHHHHHHHHC-----CCEEEEEeCCCCC
Confidence 3455655566655544444 45678889875 5578888876553
No 308
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=47.75 E-value=1.4e+02 Score=30.19 Aligned_cols=46 Identities=20% Similarity=0.256 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCC
Q 008172 352 VQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIG 411 (575)
Q Consensus 352 ~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G 411 (575)
.-..+++.|+++|.|++ |--.=.+++..|...|+|.+=|=--...|
T Consensus 100 ~~~~v~~~~~~~~i~~i--------------PG~~TpsEi~~A~~~Ga~~vKlFPA~~~G 145 (222)
T PRK07114 100 FNPDIAKVCNRRKVPYS--------------PGCGSLSEIGYAEELGCEIVKLFPGSVYG 145 (222)
T ss_pred CCHHHHHHHHHcCCCEe--------------CCCCCHHHHHHHHHCCCCEEEECcccccC
Confidence 34689999999999998 44444567789999999999885322444
No 309
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=47.63 E-value=1.9e+02 Score=30.68 Aligned_cols=136 Identities=17% Similarity=0.151 Sum_probs=73.0
Q ss_pred HHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc----CCEEEEeCCCCCCC
Q 008172 268 WDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA----SDGIMVARGDLGVD 343 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~----sDgImIaRGDLg~e 343 (575)
....+...+.|+|+|..|-+.++.| ++-...+... ++.+++=+ .|++|-+.. +|.|--- |+.|.-
T Consensus 86 ~~Ea~~L~~~GvDiID~Te~lrpad--~~~~~~K~~f--~~~fmad~------~~l~EAlrai~~GadmI~Tt-ge~gtg 154 (293)
T PRK04180 86 FVEAQILEALGVDYIDESEVLTPAD--EEYHIDKWDF--TVPFVCGA------RNLGEALRRIAEGAAMIRTK-GEAGTG 154 (293)
T ss_pred HHHHHHHHHcCCCEEeccCCCCchH--HHHHHHHHHc--CCCEEccC------CCHHHHHHHHHCCCCeeecc-CCCCCc
Confidence 3444555789999999999999933 4444443332 45666633 445444433 3443322 111110
Q ss_pred -------------------CCC--CChHHH------HHHHHH-HHHHcCCCEE-EehhhHHhhhcCCCCChhhHhhHHHH
Q 008172 344 -------------------IPL--EQIPTV------QEIIIH-VCRQLNKPVI-VASQLLESMVEYPTPTRAEVADVSEA 394 (575)
Q Consensus 344 -------------------~~~--e~v~~~------Qk~Ii~-~c~~~gKPvi-vaTq~LeSM~~~p~PtrAEv~Dv~na 394 (575)
.++ +.+... =-.+++ .++....||+ +| ....-|.+ |+..+
T Consensus 155 ~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~A--------eGGI~TPe---daa~v 223 (293)
T PRK04180 155 NVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFA--------AGGIATPA---DAALM 223 (293)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEE--------eCCCCCHH---HHHHH
Confidence 000 111110 002232 3334468887 22 11222333 44666
Q ss_pred HHcccceEEeccCcCCCCCHHHHHHHHHHHH
Q 008172 395 VRQYADALMLSGESAIGPFGQKAVSVLQMAS 425 (575)
Q Consensus 395 v~~G~D~vmLs~ETa~G~yPveaV~~m~~I~ 425 (575)
...|+|+++..+.-.....|.+.++.+....
T Consensus 224 me~GAdgVaVGSaI~ks~dP~~~akafv~ai 254 (293)
T PRK04180 224 MQLGADGVFVGSGIFKSGDPEKRARAIVEAT 254 (293)
T ss_pred HHhCCCEEEEcHHhhcCCCHHHHHHHHHHHH
Confidence 7799999999877766778988888766554
No 310
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=47.57 E-value=96 Score=32.24 Aligned_cols=126 Identities=21% Similarity=0.379 Sum_probs=73.9
Q ss_pred cCHHHHHHHHHcCCCEEEecC----cC-------ChhhHHHHHHHHhccCCCCceEEeeecC----HHHHhcHHHHHhc-
Q 008172 266 KDWDDIEFGIAEGVDFIAMSF----VC-------DADSVRHLKKYVSGKSSRSIKVLAKIEN----LESLQKFEEIVEA- 329 (575)
Q Consensus 266 kD~~di~~al~~gvd~I~~Sf----V~-------sa~dv~~ir~~l~~~~~~~i~IIaKIEt----~~av~nldeI~~~- 329 (575)
+|.......++.++|++=+.+ +. ..+...++.+.+.+. .++.+++|+=- .+-..-+.+..+.
T Consensus 112 ~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~--~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g 189 (295)
T PF01180_consen 112 EDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREA--VDIPVFVKLSPNFTDIEPFAIAAELAADG 189 (295)
T ss_dssp HHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHH--HSSEEEEEE-STSSCHHHHHHHHHHHTHT
T ss_pred HHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhc--cCCCEEEEecCCCCchHHHHHHHHhhccc
Confidence 444444444568999976643 22 122233344444433 25789999833 2223333333322
Q ss_pred CCEEE----EeCCC-CCCCC--C-----------CCChHHHHHHHHHHHHHcC--CCEEEehhhHHhhhcCCCCChhhHh
Q 008172 330 SDGIM----VARGD-LGVDI--P-----------LEQIPTVQEIIIHVCRQLN--KPVIVASQLLESMVEYPTPTRAEVA 389 (575)
Q Consensus 330 sDgIm----IaRGD-Lg~e~--~-----------~e~v~~~Qk~Ii~~c~~~g--KPvivaTq~LeSM~~~p~PtrAEv~ 389 (575)
.|||. +..++ +-.+- + ..-.|.+.+.+-+.+++.+ .|+|-.+-+. --.
T Consensus 190 ~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~------------s~~ 257 (295)
T PF01180_consen 190 ADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIH------------SGE 257 (295)
T ss_dssp ECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--------------SHH
T ss_pred eeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcC------------CHH
Confidence 78888 55554 22222 1 1334777887777777767 8888876655 346
Q ss_pred hHHHHHHcccceEEec
Q 008172 390 DVSEAVRQYADALMLS 405 (575)
Q Consensus 390 Dv~nav~~G~D~vmLs 405 (575)
|+..+++.|||+|++.
T Consensus 258 da~e~l~aGA~~Vqv~ 273 (295)
T PF01180_consen 258 DAIEFLMAGASAVQVC 273 (295)
T ss_dssp HHHHHHHHTESEEEES
T ss_pred HHHHHHHhCCCHheec
Confidence 8899999999999997
No 311
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=47.56 E-value=1.9e+02 Score=34.54 Aligned_cols=132 Identities=14% Similarity=0.133 Sum_probs=67.1
Q ss_pred CCCccCHHHH--------HHHHHcCCCEEEecCc-------------CC------------hhhHHHHHHHHhccCCCCc
Q 008172 262 TLSKKDWDDI--------EFGIAEGVDFIAMSFV-------------CD------------ADSVRHLKKYVSGKSSRSI 308 (575)
Q Consensus 262 ~lsekD~~di--------~~al~~gvd~I~~SfV-------------~s------------a~dv~~ir~~l~~~~~~~i 308 (575)
.||+.|++.+ +.|.+.|+|+|=+..- +. ...+.++.+.+++.-+.+.
T Consensus 540 ~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~ 619 (765)
T PRK08255 540 EMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEK 619 (765)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCC
Confidence 5777777665 4778899999966332 22 2223344444443322456
Q ss_pred eEEeeecCHH----------HHhcHHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHH-cCCCEEEehhhHHh
Q 008172 309 KVLAKIENLE----------SLQKFEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQ-LNKPVIVASQLLES 376 (575)
Q Consensus 309 ~IIaKIEt~~----------av~nldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~-~gKPvivaTq~LeS 376 (575)
.|..||--.+ +++=++.+.+. +|.|-|..|--.-+.....-+..|....+..++ .++||++...+
T Consensus 620 ~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i--- 696 (765)
T PRK08255 620 PMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAI--- 696 (765)
T ss_pred eeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCC---
Confidence 6777774321 22222222222 688988755322111000001123333334343 48899875432
Q ss_pred hhcCCCCChhhHhhHHHHHHcc-cceEEec
Q 008172 377 MVEYPTPTRAEVADVSEAVRQY-ADALMLS 405 (575)
Q Consensus 377 M~~~p~PtrAEv~Dv~nav~~G-~D~vmLs 405 (575)
-|.++. -.++.+| +|.||+.
T Consensus 697 ------~~~~~a---~~~l~~g~~D~v~~g 717 (765)
T PRK08255 697 ------SEADHV---NSIIAAGRADLCALA 717 (765)
T ss_pred ------CCHHHH---HHHHHcCCcceeeEc
Confidence 333333 4445555 9999996
No 312
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=47.55 E-value=45 Score=28.57 Aligned_cols=43 Identities=21% Similarity=0.442 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHhcCCcEEEEEcCC---------hhHHHHHhccCCCCcEEEE
Q 008172 457 EQICNCAVDMANNLGVDAIFVYTKH---------GHMASLLSRNRPNPPIFAF 500 (575)
Q Consensus 457 ~~ia~~av~~a~~~~AkaIVVfT~S---------G~TAr~VSr~RP~~PIiAv 500 (575)
...+...++.+.+.++++||+-++. |+++..+.+.-| ||++.+
T Consensus 88 ~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv 139 (140)
T PF00582_consen 88 GDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAP-CPVLVV 139 (140)
T ss_dssp SSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTS-SEEEEE
T ss_pred eccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCC-CCEEEe
Confidence 3466777788999999999998887 678999999777 899876
No 313
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=47.55 E-value=1.4e+02 Score=31.18 Aligned_cols=98 Identities=16% Similarity=0.164 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCCEEEec------CcCChhhHHHHHH-HHhccCCCCceEEeeecC--HHHHhcHHHHHhc-CCEEEEeC
Q 008172 268 WDDIEFGIAEGVDFIAMS------FVCDADSVRHLKK-YVSGKSSRSIKVLAKIEN--LESLQKFEEIVEA-SDGIMVAR 337 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~S------fV~sa~dv~~ir~-~l~~~~~~~i~IIaKIEt--~~av~nldeI~~~-sDgImIaR 337 (575)
.+.+++.++.|+|+|++. +-=|.++=.++-+ ..+..+ .++.||+-+-+ .++++......+. +|++|+-+
T Consensus 29 ~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~-g~~pvi~gv~~~t~~ai~~a~~a~~~Gadav~~~p 107 (296)
T TIGR03249 29 RENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAK-GKVPVYTGVGGNTSDAIEIARLAEKAGADGYLLLP 107 (296)
T ss_pred HHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhC-CCCcEEEecCccHHHHHHHHHHHHHhCCCEEEECC
Confidence 356678899999999874 4445555555544 333333 45788888742 2223222222222 79999976
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 338 GDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 338 GDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
--..- ...+.+...-+.+. .+.+.|+++-
T Consensus 108 P~y~~-~s~~~i~~~f~~v~---~a~~~pvilY 136 (296)
T TIGR03249 108 PYLIN-GEQEGLYAHVEAVC---ESTDLGVIVY 136 (296)
T ss_pred CCCCC-CCHHHHHHHHHHHH---hccCCCEEEE
Confidence 44311 11233444444443 3457888874
No 314
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=47.38 E-value=3.5e+02 Score=28.21 Aligned_cols=74 Identities=11% Similarity=0.111 Sum_probs=50.7
Q ss_pred CCccCHHHHHHHHHcCCCEEEecCcCChh--hHHH----HHHHHhccCCCCceEEeeec---CHHHHhcHHHHHhc-CCE
Q 008172 263 LSKKDWDDIEFGIAEGVDFIAMSFVCDAD--SVRH----LKKYVSGKSSRSIKVLAKIE---NLESLQKFEEIVEA-SDG 332 (575)
Q Consensus 263 lsekD~~di~~al~~gvd~I~~SfV~sa~--dv~~----ir~~l~~~~~~~i~IIaKIE---t~~av~nldeI~~~-sDg 332 (575)
++....+.+..+...|+|+|++=.=.+.. +-.+ +.+++.........+++.|- ++.+.+.+..++.. .||
T Consensus 9 vP~~~~~~~~ka~~~gaD~vilDLEDav~~~~k~~AR~~v~~~l~~~~~~~~~~~VRIn~~~~~~~~~di~~~l~~g~~g 88 (288)
T TIGR01588 9 VPGNNPAMISDAFIYGADSVMFDLEDAVSLAEKDSARLLVYEALQTPDYGDTETVVRINGLDTPFGLADIKAVVKAGVDV 88 (288)
T ss_pred cCCCCHHHHHhhhhcCCCEEEEecccCCCcchHHHHHHHHHHHHhccCCCCCEEEEEECCCCChhHHHHHHHHHhcCCCE
Confidence 34456677788899999999986533332 4444 45555433223457888886 77778888888877 799
Q ss_pred EEEe
Q 008172 333 IMVA 336 (575)
Q Consensus 333 ImIa 336 (575)
||+.
T Consensus 89 ivlP 92 (288)
T TIGR01588 89 VRLP 92 (288)
T ss_pred EEeC
Confidence 9983
No 315
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=47.24 E-value=3.7e+02 Score=28.45 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=27.8
Q ss_pred hHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHH
Q 008172 390 DVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMAS 425 (575)
Q Consensus 390 Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~ 425 (575)
|+..+...|+|+++..+.-.....|.+..+.+....
T Consensus 213 dAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai 248 (287)
T TIGR00343 213 DAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEAT 248 (287)
T ss_pred HHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHH
Confidence 446677799999999877666678998888766554
No 316
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=47.01 E-value=75 Score=33.10 Aligned_cols=67 Identities=9% Similarity=0.164 Sum_probs=46.9
Q ss_pred CccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHH--hcHHHHHhc-CCEEEEe
Q 008172 264 SKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESL--QKFEEIVEA-SDGIMVA 336 (575)
Q Consensus 264 sekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av--~nldeI~~~-sDgImIa 336 (575)
+-.+.+.+..|++.|+|+|.+..+ ++++++++.+.+.... .++.++| --|+ +|+.++++. +|+|.++
T Consensus 189 ev~t~eea~~A~~~gaD~I~ld~~-~p~~l~~~~~~~~~~~-~~i~i~A----sGGI~~~ni~~~~~~Gvd~I~vs 258 (272)
T cd01573 189 EVDSLEEALAAAEAGADILQLDKF-SPEELAELVPKLRSLA-PPVLLAA----AGGINIENAAAYAAAGADILVTS 258 (272)
T ss_pred EcCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHhccC-CCceEEE----ECCCCHHHHHHHHHcCCcEEEEC
Confidence 334567778889999999999766 5577877777665432 2444433 2233 788888888 9999775
No 317
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=46.95 E-value=1.6e+02 Score=30.32 Aligned_cols=95 Identities=21% Similarity=0.254 Sum_probs=52.8
Q ss_pred HHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHc---CCCEEEehhhHHhhhcCCCCChhhH-hhHHHHHHc
Q 008172 323 FEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQL---NKPVIVASQLLESMVEYPTPTRAEV-ADVSEAVRQ 397 (575)
Q Consensus 323 ldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~---gKPvivaTq~LeSM~~~p~PtrAEv-~Dv~nav~~ 397 (575)
++-+++. +||+++. |--| |...-.. .-++++++.+.++ ..|+++.+ ..++-.|. .-.-.|...
T Consensus 27 i~~l~~~Gv~gl~v~-GstG-E~~~lt~-~Er~~l~~~~~~~~~~~~~vi~gv---------~~~~~~~~~~~a~~a~~~ 94 (284)
T cd00950 27 IEFQIENGTDGLVVC-GTTG-ESPTLSD-EEHEAVIEAVVEAVNGRVPVIAGT---------GSNNTAEAIELTKRAEKA 94 (284)
T ss_pred HHHHHHcCCCEEEEC-CCCc-chhhCCH-HHHHHHHHHHHHHhCCCCcEEecc---------CCccHHHHHHHHHHHHHc
Confidence 3444443 8999996 4332 2222121 2233334333332 35777542 12233344 334447889
Q ss_pred ccceEEeccCcCCCCCHHHHHHHHHHHHHHHh
Q 008172 398 YADALMLSGESAIGPFGQKAVSVLQMASSRME 429 (575)
Q Consensus 398 G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 429 (575)
|+|++|+..-.....-+-+.++..+.|++.+.
T Consensus 95 G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~ 126 (284)
T cd00950 95 GADAALVVTPYYNKPSQEGLYAHFKAIAEATD 126 (284)
T ss_pred CCCEEEEcccccCCCCHHHHHHHHHHHHhcCC
Confidence 99999999766555556777788888876543
No 318
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=46.71 E-value=19 Score=37.48 Aligned_cols=37 Identities=24% Similarity=0.179 Sum_probs=32.3
Q ss_pred HhcCCcEEEEEcCChhHHHHHhc----cCCCCcEEEEcCcH
Q 008172 468 NNLGVDAIFVYTKHGHMASLLSR----NRPNPPIFAFTNDD 504 (575)
Q Consensus 468 ~~~~AkaIVVfT~SG~TAr~VSr----~RP~~PIiAvT~~~ 504 (575)
.+..++.++|-|.||+||--+|. ..|..+.+++||--
T Consensus 162 ~~~r~DGliVsTPTGSTAY~lSAGGPIv~P~l~ai~ltpi~ 202 (281)
T COG0061 162 ESFRGDGLIVSTPTGSTAYNLSAGGPILHPGLDAIQLTPIC 202 (281)
T ss_pred EEEecCEEEEEcCCcHHHHhhhcCCCccCCCCCeEEEeecC
Confidence 35689999999999999999998 57889999999754
No 319
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=46.71 E-value=1.2e+02 Score=31.29 Aligned_cols=95 Identities=17% Similarity=0.235 Sum_probs=52.4
Q ss_pred HHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHH--cC-CCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHc
Q 008172 323 FEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQ--LN-KPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQ 397 (575)
Q Consensus 323 ldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~--~g-KPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~ 397 (575)
++..++. +||+++. |--| |...-.. .-++++++.+.+ .| .||++-+ ...+-.|..+.+. |...
T Consensus 25 i~~l~~~Gv~Gi~~~-GstG-E~~~Ls~-~Er~~~~~~~~~~~~~~~~vi~gv---------~~~s~~~~i~~a~~a~~~ 92 (285)
T TIGR00674 25 IDFQIENGTDAIVVV-GTTG-ESPTLSH-EEHKKVIEFVVDLVNGRVPVIAGT---------GSNATEEAISLTKFAEDV 92 (285)
T ss_pred HHHHHHcCCCEEEEC-ccCc-ccccCCH-HHHHHHHHHHHHHhCCCCeEEEeC---------CCccHHHHHHHHHHHHHc
Confidence 3444444 8999984 3222 2222111 112334443333 24 6777643 2333445555544 7788
Q ss_pred ccceEEeccCcCCCCCHHHHHHHHHHHHHHHh
Q 008172 398 YADALMLSGESAIGPFGQKAVSVLQMASSRME 429 (575)
Q Consensus 398 G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 429 (575)
|+|++|+..=.-...-+-+.++..+.|++.++
T Consensus 93 Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~ 124 (285)
T TIGR00674 93 GADGFLVVTPYYNKPTQEGLYQHFKAIAEEVD 124 (285)
T ss_pred CCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCC
Confidence 99999998655443335666677777776654
No 320
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=46.66 E-value=2.9e+02 Score=29.64 Aligned_cols=149 Identities=16% Similarity=0.135 Sum_probs=94.6
Q ss_pred ccCHHHHHHHHHcCC--CEEEecCcCChhhHHHHHHHHhccCCCCceEEeee-cCHHHHhcHHHHHhc--C--CEEEEeC
Q 008172 265 KKDWDDIEFGIAEGV--DFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKI-ENLESLQKFEEIVEA--S--DGIMVAR 337 (575)
Q Consensus 265 ekD~~di~~al~~gv--d~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKI-Et~~av~nldeI~~~--s--DgImIaR 337 (575)
++|.+.++.|++.-- .-++-|- +.+..+++-.+..+.+ ..+++.- -..+....|-+.+.. . +-|++.+
T Consensus 136 ~kD~evleaale~~~g~~pLInSa--t~en~~~i~~lA~~y~---~~Vva~s~~Dln~ak~L~~~l~~~Gi~~edIviDP 210 (319)
T PRK04452 136 EKDAEVLEKVAEAAEGERCLLGSA--EEDNYKKIAAAAMAYG---HAVIAWSPLDINLAKQLNILLTELGVPRERIVMDP 210 (319)
T ss_pred CCCHHHHHHHHHHhCCCCCEEEEC--CHHHHHHHHHHHHHhC---CeEEEEcHHHHHHHHHHHHHHHHcCCCHHHEEEeC
Confidence 679999999988533 3455553 4667777777776554 2455543 334444444444444 2 6689999
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHH----cCCCEEEehhh-----HHhhh-------cCCCCChh---hHhhHHHHHHcc
Q 008172 338 GDLGVDIPLEQIPTVQEIIIHVCRQ----LNKPVIVASQL-----LESMV-------EYPTPTRA---EVADVSEAVRQY 398 (575)
Q Consensus 338 GDLg~e~~~e~v~~~Qk~Ii~~c~~----~gKPvivaTq~-----LeSM~-------~~p~PtrA---Ev~Dv~nav~~G 398 (575)
+=..+.++.+.....+.+|-..+-+ .|-|+|..+-. =|+.. ..++-.|+ |+.--...+.-|
T Consensus 211 ~~~~lg~g~e~~~~~~e~IR~aAl~~d~~l~~P~i~~~~~~~~~~kea~~~~~~~~~~g~~~~r~~~~E~~~a~~~~~~g 290 (319)
T PRK04452 211 TTGALGYGIEYSYSVMERIRLAALKGDEMLQMPMISGVGFEAWKAKEAWMPEEEDPEWGPREYRGILWEAVTALTLLLAG 290 (319)
T ss_pred CcccccCCHHHHHHHHHHHHHHHhcCCCcCCCCeEecchhhhhhccccccccccccccccchhccHHHHHHHHHHHHHhc
Confidence 9998888888888888877777654 56687653321 02211 00111133 555556678899
Q ss_pred cceEEeccCcCCCCCHHHHHHHHHHHHH
Q 008172 399 ADALMLSGESAIGPFGQKAVSVLQMASS 426 (575)
Q Consensus 399 ~D~vmLs~ETa~G~yPveaV~~m~~I~~ 426 (575)
+|.++|. +| ++|+++++++.
T Consensus 291 a~i~vm~-------hp-~s~~~~~~~~~ 310 (319)
T PRK04452 291 ADIFMMR-------HP-ESVKTLKEIID 310 (319)
T ss_pred CcEEEEe-------CH-HHHHHHHHHHH
Confidence 9999995 77 68888887753
No 321
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=46.63 E-value=63 Score=34.64 Aligned_cols=55 Identities=22% Similarity=0.268 Sum_probs=37.1
Q ss_pred ccccchhhhhhcccCCCCCceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCH
Q 008172 72 FDAVSEGELREKGFLGLRKTKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTR 127 (575)
Q Consensus 72 ~~~~~~~~~~~~~~~~~r~tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~ 127 (575)
+...|..+.-+.-....+++|+.+-+=|...+.+.|+...++|++.+|+-+ |.+.
T Consensus 58 ~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~-~~~e 112 (333)
T TIGR03217 58 FSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAGARTVRVAT-HCTE 112 (333)
T ss_pred CCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCCCCEEEEEe-ccch
Confidence 444444443333333356788876665666678999999999999999976 4443
No 322
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=46.60 E-value=34 Score=37.82 Aligned_cols=46 Identities=26% Similarity=0.413 Sum_probs=42.7
Q ss_pred EecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHH
Q 008172 95 CTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQL 140 (575)
Q Consensus 95 ~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~ 140 (575)
|.||-..++.+.|.-|.++|+|+.=|+-|-|+..+..++|+.||+.
T Consensus 244 AaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~ 289 (503)
T KOG2550|consen 244 AAIGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKET 289 (503)
T ss_pred eccccccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhh
Confidence 5678888889999999999999999999999999999999999975
No 323
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=46.57 E-value=48 Score=34.72 Aligned_cols=62 Identities=21% Similarity=0.328 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCCEEEecCc---------CChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc----CCEEE
Q 008172 268 WDDIEFGIAEGVDFIAMSFV---------CDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA----SDGIM 334 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV---------~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~----sDgIm 334 (575)
.++.+.+.+.|+|+|.++-- .+.+-+.++++.+. +++.||+- -|+.+-.++++. +|++|
T Consensus 183 ~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~----~~ipvia~----GGI~~~~d~~kal~lGAd~V~ 254 (299)
T cd02809 183 PEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVG----GRIEVLLD----GGIRRGTDVLKALALGADAVL 254 (299)
T ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhc----CCCeEEEe----CCCCCHHHHHHHHHcCCCEEE
Confidence 56678899999999999642 23334444444332 24556652 456666666555 78888
Q ss_pred EeC
Q 008172 335 VAR 337 (575)
Q Consensus 335 IaR 337 (575)
+||
T Consensus 255 ig~ 257 (299)
T cd02809 255 IGR 257 (299)
T ss_pred EcH
Confidence 887
No 324
>PRK08417 dihydroorotase; Provisional
Probab=46.55 E-value=4.1e+02 Score=28.72 Aligned_cols=129 Identities=12% Similarity=0.186 Sum_probs=68.2
Q ss_pred cCCCCCccCHHHH-HHHHHcCCCEEEe-----cCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CC
Q 008172 259 GLPTLSKKDWDDI-EFGIAEGVDFIAM-----SFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SD 331 (575)
Q Consensus 259 ~lp~lsekD~~di-~~al~~gvd~I~~-----SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sD 331 (575)
.-|..+.+|.+.. +.|+..|+-.|+. |.+.+++.++...+..++.....+....-....+.++.+++..+. ++
T Consensus 40 ~~~~~~~e~~~t~s~aA~aGGvTtv~dmpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~ 119 (386)
T PRK08417 40 KNDSLSSKNLKSLENECLKGGVGSIVLYPDSTPAIDNEIALELINSAQRELPMQIFPSIRALDEDGKLSNIATLLKKGAK 119 (386)
T ss_pred CCCCcChhhHHHHHHHHHcCCcEEEEeCCCCCCCCCCHHHHHHHHHHhhccCCcEEEEEEEECCCccHHHHHHHHHCCCE
Confidence 3355554444333 4567788888765 234455566655554433100112222222344456666666544 66
Q ss_pred EEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhh---HHh--hh---------cCCCCChhhHhhHHHHHH
Q 008172 332 GIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQL---LES--MV---------EYPTPTRAEVADVSEAVR 396 (575)
Q Consensus 332 gImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~---LeS--M~---------~~p~PtrAEv~Dv~nav~ 396 (575)
++... + ..-.....++++.+.+.|+||.+=.+- +.+ |. ...+|..+|...+..++.
T Consensus 120 ~~k~~-~--------~~~~~~l~~~~~~a~~~g~~V~~HaEd~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~~v~~~~~ 189 (386)
T PRK08417 120 ALELS-S--------DLDANLLKVIAQYAKMLDVPIFCRCEDSSFDDSGVMNDGELSFELGLPGIPSIAETKEVAKMKE 189 (386)
T ss_pred EEECC-C--------CCCHHHHHHHHHHHHHcCCEEEEeCCCHHHhhHHHHhcChhhHHhCCCCCCHHHHHHHHHHHHH
Confidence 66542 1 122345667888899999999875432 111 11 123577788777766443
No 325
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.54 E-value=19 Score=37.36 Aligned_cols=54 Identities=19% Similarity=0.122 Sum_probs=39.8
Q ss_pred hcCCcEEEEEcCChhHHHHHhc----cCCCCcEEEEcCcHHHHHHhcccCCcE-EEEecCC
Q 008172 469 NLGVDAIFVYTKHGHMASLLSR----NRPNPPIFAFTNDDSTRMALNLQWGVI-PVLVNLS 524 (575)
Q Consensus 469 ~~~AkaIVVfT~SG~TAr~VSr----~RP~~PIiAvT~~~~~aR~L~L~~GV~-Pvl~~~~ 524 (575)
+..++.++|-|.+|+||-.+|. ..|.++.+.+||=..+.. ..+++.. |++++..
T Consensus 145 ~~~gDGlIVsTptGSTAYslSaGGPIv~P~~~~~~ltPI~~l~~--r~~~~~~~plVl~~~ 203 (265)
T PRK04885 145 RFRGDGLCVSTPTGSTAYNKSLGGAVLHPSIEALQLTEIASINN--RVFRTLGSPLILPKH 203 (265)
T ss_pred EEEcCEEEEECCCChHHHHhhCCCceeCCCCCeEEEEeeccccc--cccccCCCCEEECCC
Confidence 4578999999999999999998 788999999998662111 1233333 7777643
No 326
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=46.44 E-value=84 Score=30.23 Aligned_cols=67 Identities=21% Similarity=0.251 Sum_probs=45.4
Q ss_pred HHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHc-CCCEEEeh
Q 008172 293 VRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQL-NKPVIVAS 371 (575)
Q Consensus 293 v~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~-gKPvivaT 371 (575)
++.+++.+++.+ ..+.+.+--+..+. +|++++++-.|.|+.+-.+ +.....+.+.|.++ ++|++.+.
T Consensus 54 a~~~~~~l~~ln-p~v~i~~~~~~~~~-~~~~~~l~~~DlVi~~~d~----------~~~r~~i~~~~~~~~~ip~i~~~ 121 (174)
T cd01487 54 VEALKENLREIN-PFVKIEAINIKIDE-NNLEGLFGDCDIVVEAFDN----------AETKAMLAESLLGNKNKPVVCAS 121 (174)
T ss_pred HHHHHHHHHHHC-CCCEEEEEEeecCh-hhHHHHhcCCCEEEECCCC----------HHHHHHHHHHHHHHCCCCEEEEe
Confidence 666667777665 56666554444333 6788888888988886322 34556677777776 99999873
No 327
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=46.43 E-value=92 Score=32.11 Aligned_cols=82 Identities=21% Similarity=0.228 Sum_probs=51.0
Q ss_pred CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcC
Q 008172 330 SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESA 409 (575)
Q Consensus 330 sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa 409 (575)
+..+|.--.-.|.-.|+.+- ..-+.|+ .+...|||+-- ..-+. +|++.|.+.|+|+|++..--|
T Consensus 145 caavMPlgsPIGSg~Gi~n~-~~l~~i~---~~~~vPvIvDA---------GiG~p---Sdaa~AMElG~daVLvNTAiA 208 (247)
T PF05690_consen 145 CAAVMPLGSPIGSGRGIQNP-YNLRIII---ERADVPVIVDA---------GIGTP---SDAAQAMELGADAVLVNTAIA 208 (247)
T ss_dssp -SEBEEBSSSTTT---SSTH-HHHHHHH---HHGSSSBEEES------------SH---HHHHHHHHTT-SEEEESHHHH
T ss_pred CCEEEecccccccCcCCCCH-HHHHHHH---HhcCCcEEEeC---------CCCCH---HHHHHHHHcCCceeehhhHHh
Confidence 45566644444444455553 3344443 34499999842 33333 467999999999999998999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 008172 410 IGPFGQKAVSVLQMASSR 427 (575)
Q Consensus 410 ~G~yPveaV~~m~~I~~~ 427 (575)
..+.|+.-.+-|+.-++.
T Consensus 209 ~A~dPv~MA~Af~~AV~A 226 (247)
T PF05690_consen 209 KAKDPVAMARAFKLAVEA 226 (247)
T ss_dssp TSSSHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 999998877777655433
No 328
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=46.22 E-value=45 Score=33.22 Aligned_cols=59 Identities=12% Similarity=0.145 Sum_probs=40.9
Q ss_pred EecCCEEEEEeec--cCCC-CC-cEEEecccccc--cccCCCCEEEEe--CCeeEEEEEEEECCeEE
Q 008172 172 VEEDSIWLFTAIK--FEGS-RP-FTVKANYAGFS--EGIEVGDELVID--GGMASFEVIEKVGNDLR 230 (575)
Q Consensus 172 l~~G~~v~lt~~~--~~~~-~~-~~i~v~~~~l~--~~v~~Gd~IliD--DG~i~l~V~~~~~~~i~ 230 (575)
.+.|++++++... ..+. ++ ....++-+.|. ..+++|++++.+ +|.+.++|+++.++.++
T Consensus 52 ~~~Gd~~~v~l~peeAyGe~d~~lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev~~d~V~ 118 (196)
T PRK10737 52 HEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVV 118 (196)
T ss_pred CCCCCEEEEEEChHHhcCCCChHHEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEEEcCCEEE
Confidence 4588888887654 2332 12 34456655553 358999999884 78899999999988855
No 329
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=46.21 E-value=48 Score=33.29 Aligned_cols=60 Identities=18% Similarity=0.282 Sum_probs=43.5
Q ss_pred CCceEEEec-----CCCCCC-HHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhcCCce
Q 008172 89 RKTKMVCTI-----GPACCS-MEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEKLFCI 148 (575)
Q Consensus 89 r~tkIi~Ti-----GPas~~-~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~~~~i 148 (575)
.++|||++- .|+..+ .+.+++|.+.|.|+.+|-..--+.++...+++..+++.+....|+
T Consensus 117 ~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~p~ 182 (228)
T TIGR01093 117 GGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITNKVDEHADVPL 182 (228)
T ss_pred CCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEeccCCHHHHHHHHHHHHHHHhcCCCCE
Confidence 579999987 233322 357899999999999999776677777788777766654444553
No 330
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=46.11 E-value=2.5e+02 Score=30.03 Aligned_cols=132 Identities=13% Similarity=0.140 Sum_probs=65.8
Q ss_pred CCCccCHHHH--------HHHHHcCCCEEEecC-------------cCC------------hhhHHHHHHHHhccCCCCc
Q 008172 262 TLSKKDWDDI--------EFGIAEGVDFIAMSF-------------VCD------------ADSVRHLKKYVSGKSSRSI 308 (575)
Q Consensus 262 ~lsekD~~di--------~~al~~gvd~I~~Sf-------------V~s------------a~dv~~ir~~l~~~~~~~i 308 (575)
.||+.|++.+ +.|.+.|+|+|=+-. .+. ...+.++.+.+++.=+++.
T Consensus 126 ~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~ 205 (353)
T cd02930 126 ELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDF 205 (353)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCc
Confidence 5777777655 567889999995522 232 2223333333333212456
Q ss_pred eEEeeecC----------HHHHhcHHHHHhc-CCEEEEeCCCCCCCCCCC--ChH-HHHHHHHHHHH-HcCCCEEEehhh
Q 008172 309 KVLAKIEN----------LESLQKFEEIVEA-SDGIMVARGDLGVDIPLE--QIP-TVQEIIIHVCR-QLNKPVIVASQL 373 (575)
Q Consensus 309 ~IIaKIEt----------~~av~nldeI~~~-sDgImIaRGDLg~e~~~e--~v~-~~Qk~Ii~~c~-~~gKPvivaTq~ 373 (575)
.|..||-- .++++-++.+-+. .|.|=|..|-..-..+.. ..+ ..+....+..+ ..+.||++...
T Consensus 206 ~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~- 284 (353)
T cd02930 206 IIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNR- 284 (353)
T ss_pred eEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCC-
Confidence 66656532 2233333444333 688888655321111110 001 11222222223 35889887533
Q ss_pred HHhhhcCCCCChhhHhhHHHHHHcc-cceEEec
Q 008172 374 LESMVEYPTPTRAEVADVSEAVRQY-ADALMLS 405 (575)
Q Consensus 374 LeSM~~~p~PtrAEv~Dv~nav~~G-~D~vmLs 405 (575)
.-+++ +...++.+| +|.|++.
T Consensus 285 --------i~~~~---~a~~~i~~g~~D~V~~g 306 (353)
T cd02930 285 --------INTPE---VAERLLADGDADMVSMA 306 (353)
T ss_pred --------CCCHH---HHHHHHHCCCCChhHhh
Confidence 23333 345556666 9999986
No 331
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=46.11 E-value=3.4e+02 Score=27.72 Aligned_cols=93 Identities=19% Similarity=0.232 Sum_probs=52.6
Q ss_pred HHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHc---CCCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHcc
Q 008172 324 EEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQL---NKPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQY 398 (575)
Q Consensus 324 deI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~---gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~G 398 (575)
+..++. +|||++. | -.-|...-.. .-++++++.+.+. ..|+++-+ ..++-.|..+.+. |-..|
T Consensus 25 ~~l~~~Gv~gi~~~-G-stGE~~~ls~-~Er~~l~~~~~~~~~~~~~vi~gv---------~~~~~~~~i~~a~~a~~~G 92 (281)
T cd00408 25 EFLIEAGVDGLVVL-G-TTGEAPTLTD-EERKEVIEAVVEAVAGRVPVIAGV---------GANSTREAIELARHAEEAG 92 (281)
T ss_pred HHHHHcCCCEEEEC-C-CCcccccCCH-HHHHHHHHHHHHHhCCCCeEEEec---------CCccHHHHHHHHHHHHHcC
Confidence 333443 8999985 3 2233332222 2233444433332 46777643 3455667777666 55569
Q ss_pred cceEEeccCcCCCCCHHHHHHHHHHHHHHH
Q 008172 399 ADALMLSGESAIGPFGQKAVSVLQMASSRM 428 (575)
Q Consensus 399 ~D~vmLs~ETa~G~yPveaV~~m~~I~~~a 428 (575)
+|++|+..-.-...-+-+.++..+.|++..
T Consensus 93 ad~v~v~pP~y~~~~~~~~~~~~~~ia~~~ 122 (281)
T cd00408 93 ADGVLVVPPYYNKPSQEGIVAHFKAVADAS 122 (281)
T ss_pred CCEEEECCCcCCCCCHHHHHHHHHHHHhcC
Confidence 999999765433334567777777776553
No 332
>PRK12483 threonine dehydratase; Reviewed
Probab=46.01 E-value=2.2e+02 Score=32.56 Aligned_cols=120 Identities=14% Similarity=0.165 Sum_probs=74.7
Q ss_pred HHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhh
Q 008172 354 EIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSR 433 (575)
Q Consensus 354 k~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 433 (575)
.-+...|+..|.|+.+. .|..+....+...-..|++.++- + ...-++++...+++++ +.+.
T Consensus 98 ~gvA~aA~~lGi~~~Iv-----------mP~~tp~~Kv~~~r~~GAeVil~-g-----~~~d~a~~~A~~la~e-~g~~- 158 (521)
T PRK12483 98 QGVALAAARLGVKAVIV-----------MPRTTPQLKVDGVRAHGGEVVLH-G-----ESFPDALAHALKLAEE-EGLT- 158 (521)
T ss_pred HHHHHHHHHhCCCEEEE-----------ECCCCCHHHHHHHHHCCCEEEEE-C-----CCHHHHHHHHHHHHHh-cCCe-
Confidence 35667899999999985 35545555567777899986653 3 3345666654444322 1111
Q ss_pred hhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcC--CcEEEEEcCChhHHHHHhc----cCCCCcEEEEcCcH
Q 008172 434 EENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLG--VDAIFVYTKHGHMASLLSR----NRPNPPIFAFTNDD 504 (575)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--AkaIVVfT~SG~TAr~VSr----~RP~~PIiAvT~~~ 504 (575)
..++... + .....-..-+.|+.++++ .+.||+..-+|.++--+++ ++|...||+|-+..
T Consensus 159 ---------~v~pfdd--~-~viaGqgTig~EI~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~ 223 (521)
T PRK12483 159 ---------FVPPFDD--P-DVIAGQGTVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDD 223 (521)
T ss_pred ---------eeCCCCC--h-HHHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 1111111 1 112222334677777775 6999999999997766665 58999999998754
No 333
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=45.66 E-value=1.9e+02 Score=30.62 Aligned_cols=115 Identities=14% Similarity=0.233 Sum_probs=64.5
Q ss_pred HHHHHHHcCCCEEEec---------------CcCChhhHHHHHHHHhccCCCCceEEeeecCH------HHHhcHHHHHh
Q 008172 270 DIEFGIAEGVDFIAMS---------------FVCDADSVRHLKKYVSGKSSRSIKVLAKIENL------ESLQKFEEIVE 328 (575)
Q Consensus 270 di~~al~~gvd~I~~S---------------fV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~------~av~nldeI~~ 328 (575)
.++...+.|+.+|.+= .+...+.+..++.....+...+..|+|..|.. ++++....-.+
T Consensus 97 ~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~e 176 (294)
T TIGR02319 97 ATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVA 176 (294)
T ss_pred HHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHH
Confidence 3455566677666551 23444556667766654443568999999985 34444444444
Q ss_pred c-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 329 A-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 329 ~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
. +|+||+- | +... .+|-+.+++...|+.. +|++. -..|.++..|+. ..|+..+...
T Consensus 177 AGAD~ifi~-~-------~~~~----~ei~~~~~~~~~P~~~--nv~~~-~~~p~~s~~eL~------~lG~~~v~~~ 233 (294)
T TIGR02319 177 AGADCIFLE-A-------MLDV----EEMKRVRDEIDAPLLA--NMVEG-GKTPWLTTKELE------SIGYNLAIYP 233 (294)
T ss_pred hCCCEEEec-C-------CCCH----HHHHHHHHhcCCCeeE--EEEec-CCCCCCCHHHHH------HcCCcEEEEc
Confidence 4 8999994 2 2222 2344455566778732 23321 223445655444 5688877653
No 334
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=45.62 E-value=23 Score=33.70 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEcCChhHHHHHhccCCCC-cEEEEcCcHHHHHHhcccCCcEEEEec
Q 008172 456 AEQICNCAVDMANNLGVDAIFVYTKHGHMASLLSRNRPNP-PIFAFTNDDSTRMALNLQWGVIPVLVN 522 (575)
Q Consensus 456 ~~~ia~~av~~a~~~~AkaIVVfT~SG~TAr~VSr~RP~~-PIiAvT~~~~~aR~L~L~~GV~Pvl~~ 522 (575)
.+.||..|.++-.. -+ ++|=.+|.|+..++++=|.. ++-.+|++-.++..|.-.-++.-++..
T Consensus 6 K~~IA~~A~~~I~~--~~--~Ifld~GtT~~~la~~L~~~~~ltVvTnsl~ia~~l~~~~~~~vi~~G 69 (161)
T PF00455_consen 6 KRAIARKAASLIED--GD--TIFLDSGTTTLELAKYLPDKKNLTVVTNSLPIANELSENPNIEVILLG 69 (161)
T ss_pred HHHHHHHHHHhCCC--CC--EEEEECchHHHHHHHHhhcCCceEEEECCHHHHHHHHhcCceEEEEeC
Confidence 45677777665543 22 35556899999999987776 999999999999999877777777664
No 335
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=45.56 E-value=2.4e+02 Score=34.47 Aligned_cols=126 Identities=16% Similarity=0.169 Sum_probs=82.4
Q ss_pred HHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCC-------------C--------CceEEeeecCHHHHhcHHHHH
Q 008172 269 DDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSS-------------R--------SIKVLAKIENLESLQKFEEIV 327 (575)
Q Consensus 269 ~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~-------------~--------~i~IIaKIEt~~av~nldeI~ 327 (575)
+.++.|.+.|.+.|++.--.+..-+.++.+.+...|- + ...++.=-+|.+|..||-.+.
T Consensus 23 elv~~A~~~G~~aiAiTDh~~~~g~~~f~~~~~~~gik~I~G~E~~~~~~~~~~~~~~~~~~lvLLAkN~~GY~NL~kL~ 102 (874)
T PRK09532 23 ALVDRAIELGMPAIALTDHGVMYGAIELLKVCRNKGIKPIIGNEMYVINGDIEKQKRRRKYHQVVLAKNTQGYKNLVKLT 102 (874)
T ss_pred HHHHHHHHCCCCEEEEecCCChhhHHHHHHHHHHcCCeEEEEEEEEecCCCcccccccccceeEEEecCHHHHHHHHHHH
Confidence 5568899999999999988887777676665543320 0 011233336888999996554
Q ss_pred h-------------------------cCCEEEEeCCCCCC-------------------------------CCCCCCh--
Q 008172 328 E-------------------------ASDGIMVARGDLGV-------------------------------DIPLEQI-- 349 (575)
Q Consensus 328 ~-------------------------~sDgImIaRGDLg~-------------------------------e~~~e~v-- 349 (575)
. ..+|+++.-|-++- |+.....
T Consensus 103 S~a~~~~~~~~~~~~~P~i~~e~L~~~~~gLi~lsg~~~g~~~~~l~~~~~~~a~~~~~~~~~~fg~~~YLEIq~~g~~~ 182 (874)
T PRK09532 103 TISHLQGVQGKGIFARPCINKELLEQYHEGLIVTSACLGGEIPQAILSGRPDAARKVAKWYKKLFGDDFYLEIQDHGSQE 182 (874)
T ss_pred hHHHHhcccccCccCCCcCCHHHHHhcCCCeEEEeCCccchHHHHHhCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCChH
Confidence 3 35888876543322 2221111
Q ss_pred -HHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHccc
Q 008172 350 -PTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYA 399 (575)
Q Consensus 350 -~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~ 399 (575)
....+++++.|++.|+|++....+ +-..|..++..|+..++..|.
T Consensus 183 e~~~n~~Li~lAkk~giplVATnDv-----hY~~~eD~~~hdvL~~i~~g~ 228 (874)
T PRK09532 183 DRIVNVEIVKIARELGIKIIATNDS-----HFISCYDVEAHDALLCIQTGK 228 (874)
T ss_pred HHHHHHHHHHHHHHhCCCEEEccCC-----cccCHhHHHHHHHHHHHhCCC
Confidence 123367899999999999975432 234688888999999998775
No 336
>PRK06381 threonine synthase; Validated
Probab=45.51 E-value=3.5e+02 Score=28.32 Aligned_cols=121 Identities=15% Similarity=0.122 Sum_probs=73.6
Q ss_pred HHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhhh
Q 008172 355 IIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSRE 434 (575)
Q Consensus 355 ~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 434 (575)
-+...|+..|-|+++.. |.......+...-..|++.+...+ .| -++++...+.+++ +.++.
T Consensus 77 alA~~aa~~G~~~~ivv-----------p~~~~~~~~~~l~~~GA~V~~~~~-----~~-~~~~~~a~~~~~~-~~~~~- 137 (319)
T PRK06381 77 SIAYFARLYGLKAVIFI-----------PRSYSNSRVKEMEKYGAEIIYVDG-----KY-EEAVERSRKFAKE-NGIYD- 137 (319)
T ss_pred HHHHHHHHcCCcEEEEE-----------CCCCCHHHHHHHHHcCCEEEEcCC-----CH-HHHHHHHHHHHHH-cCcEe-
Confidence 45668999999999852 333333445566689999888864 23 3555554444332 22111
Q ss_pred hhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcC--CcEEEEEcCChhHHHHHhcc----------CCCCcEEEEcC
Q 008172 435 ENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLG--VDAIFVYTKHGHMASLLSRN----------RPNPPIFAFTN 502 (575)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--AkaIVVfT~SG~TAr~VSr~----------RP~~PIiAvT~ 502 (575)
..+. ...+....+....-+.++..+++ .+.||+.+-+|.|+--++++ .|...|+++.+
T Consensus 138 ---------~~~~-~~n~~~~~~G~~t~a~Ei~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~ 207 (319)
T PRK06381 138 ---------ANPG-SVNSVVDIEAYSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVST 207 (319)
T ss_pred ---------cCCC-CCCcchHhhhHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEee
Confidence 1110 00110112334555667777765 58999999999988777764 68888999987
Q ss_pred cH
Q 008172 503 DD 504 (575)
Q Consensus 503 ~~ 504 (575)
..
T Consensus 208 ~~ 209 (319)
T PRK06381 208 SG 209 (319)
T ss_pred CC
Confidence 44
No 337
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=45.47 E-value=53 Score=39.33 Aligned_cols=87 Identities=13% Similarity=0.174 Sum_probs=67.8
Q ss_pred EEecCcCChhhHHHHHHHHhccCCC-----CceEEeeecCHHHHhcHHHHHhc------CC----------EEEEeCCCC
Q 008172 282 IAMSFVCDADSVRHLKKYVSGKSSR-----SIKVLAKIENLESLQKFEEIVEA------SD----------GIMVARGDL 340 (575)
Q Consensus 282 I~~SfV~sa~dv~~ir~~l~~~~~~-----~i~IIaKIEt~~av~nldeI~~~------sD----------gImIaRGDL 340 (575)
.++|+.+++.||.++-=++++.|.. .+.|+.--||.+-++|-..|+.. .+ .||+|=.|=
T Consensus 489 yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~VvPLFETieDL~na~~vm~~ll~l~~yR~~l~~~~n~QEVMlGYSDS 568 (910)
T COG2352 489 YIISMAESVSDVLEVLLLLKEAGLVDPERARVPVVPLFETIEDLDNAPDVMTQLLNLPLYRALLAGRGNVQEVMLGYSDS 568 (910)
T ss_pred hhhhccCCHHHHHHHHHHHHHhCCCCccCCccccccccccHHHHhccHHHHHHHHcChHHHHHHcCCCCceEEEeccccc
Confidence 5799999999999998888887743 48899999999999999888765 22 466665554
Q ss_pred CCCCCC----CChHHHHHHHHHHHHHcCCCEE
Q 008172 341 GVDIPL----EQIPTVQEIIIHVCRQLNKPVI 368 (575)
Q Consensus 341 g~e~~~----e~v~~~Qk~Ii~~c~~~gKPvi 368 (575)
.=+=|+ =.+..+|+.+++.|+++|.-.=
T Consensus 569 nKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~Lr 600 (910)
T COG2352 569 NKDGGYLAANWALYKAQLALVELCEKAGVELR 600 (910)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhCceEE
Confidence 333333 2478899999999999997653
No 338
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=45.46 E-value=3.3e+02 Score=28.74 Aligned_cols=150 Identities=13% Similarity=0.139 Sum_probs=90.6
Q ss_pred cCCCCCccCHHHHH----HHHHcCCCEEEecCcCC------hhhHHH-HHHHHhccCCCCceEEeeecCHHHHhcHHHHH
Q 008172 259 GLPTLSKKDWDDIE----FGIAEGVDFIAMSFVCD------ADSVRH-LKKYVSGKSSRSIKVLAKIENLESLQKFEEIV 327 (575)
Q Consensus 259 ~lp~lsekD~~di~----~al~~gvd~I~~SfV~s------a~dv~~-ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~ 327 (575)
.+|+++--+.+.++ -|-+.+...|+--.-.. .+.+.. ++.+.++.+ -.+.+...+.+- .++.+.+.+
T Consensus 19 av~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~-~~vPV~lHLDH~-~~~~i~~ai 96 (293)
T PRK07315 19 AVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMG-ITVPVAIHLDHG-HYEDALECI 96 (293)
T ss_pred eEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcC-CCCcEEEECCCC-CHHHHHHHH
Confidence 34444444544443 34456777665422211 122222 233333321 246789999887 666666666
Q ss_pred hc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhH---HhhhcCCCCChhhHhhHHHHHHcccceEE
Q 008172 328 EA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLL---ESMVEYPTPTRAEVADVSEAVRQYADALM 403 (575)
Q Consensus 328 ~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~L---eSM~~~p~PtrAEv~Dv~nav~~G~D~vm 403 (575)
+. .+-||+.--+| |.++.-..-+++.+.|+++|.|+=..-.-+ |-++..... .....++..|+..|+|++-
T Consensus 97 ~~GftSVm~d~S~l----~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~-~t~peea~~f~~tgvD~LA 171 (293)
T PRK07315 97 EVGYTSIMFDGSHL----PVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGE-LAPIEDAKAMVETGIDFLA 171 (293)
T ss_pred HcCCCEEEEcCCCC----CHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccC-CCCHHHHHHHHHcCCCEEe
Confidence 66 89999975544 788888889999999999999985433322 112111111 1223344567789999999
Q ss_pred eccCcCCCCCHH
Q 008172 404 LSGESAIGPFGQ 415 (575)
Q Consensus 404 Ls~ETa~G~yPv 415 (575)
++--|.-|.||-
T Consensus 172 v~iG~vHG~y~t 183 (293)
T PRK07315 172 AGIGNIHGPYPE 183 (293)
T ss_pred eccccccccCCC
Confidence 998899999974
No 339
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=45.40 E-value=3.4e+02 Score=27.42 Aligned_cols=135 Identities=13% Similarity=0.181 Sum_probs=74.0
Q ss_pred cCHHHHHHHHHcCCCEEEecC--cCChhhHHHHHHHHhccCCCCceE-------Eeee----cC-HHHHhcHHHHHhc-C
Q 008172 266 KDWDDIEFGIAEGVDFIAMSF--VCDADSVRHLKKYVSGKSSRSIKV-------LAKI----EN-LESLQKFEEIVEA-S 330 (575)
Q Consensus 266 kD~~di~~al~~gvd~I~~Sf--V~sa~dv~~ir~~l~~~~~~~i~I-------IaKI----Et-~~av~nldeI~~~-s 330 (575)
++.++++..++.|++.+.+.- +++++-+.++-+.+. +++.+ ..|+ ++ ...++-+..+.+. +
T Consensus 85 rs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~----~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~ 160 (241)
T PRK14024 85 RDDESLEAALATGCARVNIGTAALENPEWCARVIAEHG----DRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGC 160 (241)
T ss_pred CCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhh----hhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCC
Confidence 578999999999999987654 466666666655442 22211 1111 11 1112222222222 5
Q ss_pred CEEEEe-CCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcC
Q 008172 331 DGIMVA-RGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESA 409 (575)
Q Consensus 331 DgImIa-RGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa 409 (575)
+.+++- |.==|..-|+ +...+ ++ .++....|+|.+..+ -+..++.++......|+|++|+..---
T Consensus 161 ~~iiv~~~~~~g~~~G~-d~~~i-~~---i~~~~~ipviasGGi---------~s~~D~~~l~~~~~~GvdgV~igra~~ 226 (241)
T PRK14024 161 SRYVVTDVTKDGTLTGP-NLELL-RE---VCARTDAPVVASGGV---------SSLDDLRALAELVPLGVEGAIVGKALY 226 (241)
T ss_pred CEEEEEeecCCCCccCC-CHHHH-HH---HHhhCCCCEEEeCCC---------CCHHHHHHHhhhccCCccEEEEeHHHH
Confidence 776664 2212222232 32222 33 344568999987643 344444444332346999999987777
Q ss_pred CCCCHHHHH
Q 008172 410 IGPFGQKAV 418 (575)
Q Consensus 410 ~G~yPveaV 418 (575)
.|.++++-.
T Consensus 227 ~g~~~~~~~ 235 (241)
T PRK14024 227 AGAFTLPEA 235 (241)
T ss_pred cCCCCHHHH
Confidence 788877643
No 340
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=45.36 E-value=2.8e+02 Score=28.48 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHc-CCCEEEehhhHHhhhcCCCCChhhHhhHHHH-HHcccceEEeccCc
Q 008172 349 IPTVQEIIIHVCRQL-NKPVIVASQLLESMVEYPTPTRAEVADVSEA-VRQYADALMLSGES 408 (575)
Q Consensus 349 v~~~Qk~Ii~~c~~~-gKPvivaTq~LeSM~~~p~PtrAEv~Dv~na-v~~G~D~vmLs~ET 408 (575)
-+..-.+++++.++. ++|+++=. .+..+..|..+++.+ ...|+|++.+++=+
T Consensus 146 ~~~~~~eiv~~vr~~~~~pv~vKl--------~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~ 199 (289)
T cd02810 146 DPEAVANLLKAVKAAVDIPLLVKL--------SPYFDLEDIVELAKAAERAGADGLTAINTI 199 (289)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEe--------CCCCCHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 456667788888876 89999732 234455567777764 45699999998544
No 341
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=45.35 E-value=67 Score=34.50 Aligned_cols=68 Identities=19% Similarity=0.252 Sum_probs=41.8
Q ss_pred cccccchhhhhhcccCCCCCceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHH
Q 008172 71 GFDAVSEGELREKGFLGLRKTKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIK 138 (575)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~r~tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir 138 (575)
++...|+.+..+.-....+++|+.+-+=|...+.+.++...++|++++|+-+.-...+...+.++.+|
T Consensus 58 g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak 125 (337)
T PRK08195 58 GFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLAR 125 (337)
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHH
Confidence 34444444443332233567888875557667789999999999999999863333333333343333
No 342
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=45.30 E-value=99 Score=35.82 Aligned_cols=148 Identities=14% Similarity=0.104 Sum_probs=92.5
Q ss_pred CCCccCHHHHHHHH-HcCCCEEEe----------cCcCChhhHHHHHHHHhccCCCCceEEee--ecCHHHHhc------
Q 008172 262 TLSKKDWDDIEFGI-AEGVDFIAM----------SFVCDADSVRHLKKYVSGKSSRSIKVLAK--IENLESLQK------ 322 (575)
Q Consensus 262 ~lsekD~~di~~al-~~gvd~I~~----------SfV~sa~dv~~ir~~l~~~~~~~i~IIaK--IEt~~av~n------ 322 (575)
+++..|+..|..++ +.|++.|=+ +|++ .++-+.++.+-+.. .++.+.+- --|.-|..+
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~-e~~~e~l~~l~~~~--~~~~l~~L~Rg~N~~G~~~ypddvv 93 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLN-EDPWERLRELKKAL--PNTPLQMLLRGQNLLGYRHYADDVV 93 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCC-CCHHHHHHHHHHhC--CCCEEEEEEccccccccccCchhhH
Confidence 57778876665554 589998755 7774 44455555543222 23443332 333333322
Q ss_pred ---HHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHc
Q 008172 323 ---FEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQ 397 (575)
Q Consensus 323 ---ldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~ 397 (575)
++.-++. .|.+-|. .+..++ .-.+..++.++++|+-+.++ + +|..+|.=|...+.+++. +...
T Consensus 94 ~~~v~~a~~~Gvd~irif-------~~lnd~-~n~~~~i~~ak~~G~~v~~~---i-~~t~~p~~~~~~~~~~~~~~~~~ 161 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIF-------DALNDP-RNLQAAIQAAKKHGAHAQGT---I-SYTTSPVHTLETYLDLAEELLEM 161 (582)
T ss_pred HHHHHHHHHCCCCEEEEE-------EecCcH-HHHHHHHHHHHHcCCEEEEE---E-EeccCCCCCHHHHHHHHHHHHHc
Confidence 2222232 5765553 233333 34667779999999987764 1 444566657777888776 5567
Q ss_pred ccceEEeccCcCCCCCHHHHHHHHHHHH
Q 008172 398 YADALMLSGESAIGPFGQKAVSVLQMAS 425 (575)
Q Consensus 398 G~D~vmLs~ETa~G~yPveaV~~m~~I~ 425 (575)
|+|.+.|. +|+=.-.|.++-++++.+.
T Consensus 162 Gad~I~i~-Dt~G~~~P~~v~~lv~~lk 188 (582)
T TIGR01108 162 GVDSICIK-DMAGILTPKAAYELVSALK 188 (582)
T ss_pred CCCEEEEC-CCCCCcCHHHHHHHHHHHH
Confidence 99999998 9999999999888877774
No 343
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=45.25 E-value=96 Score=31.02 Aligned_cols=67 Identities=16% Similarity=0.280 Sum_probs=46.4
Q ss_pred hHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 292 SVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 292 dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
.+..+++.+.+.+ .++.+-+--+.. .-+|++++++-.|.|+.+-++ +.....+-+.|+++++|++.+
T Consensus 76 Ka~~~~~~l~~~n-p~~~i~~~~~~i-~~~~~~~~~~~~DvVi~~~d~----------~~~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 76 KAEAAAERLRAIN-PDVEIEAYNERL-DAENAEELIAGYDLVLDCTDN----------FATRYLINDACVKLGKPLVSG 142 (228)
T ss_pred HHHHHHHHHHHhC-CCCEEEEeccee-CHHHHHHHHhCCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 4555666676665 555555443333 236788888889999987333 245677889999999999975
No 344
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=45.15 E-value=1.2e+02 Score=33.31 Aligned_cols=93 Identities=15% Similarity=0.161 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc----CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcC
Q 008172 289 DADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA----SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLN 364 (575)
Q Consensus 289 sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~----sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~g 364 (575)
+-++++.+++.. +..+|.| ++-+.++.... +|+|+|.=.-=...=+..--..+-.+|.+++...
T Consensus 241 tW~~i~~lr~~~------~~pvivK-----gV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~- 308 (383)
T cd03332 241 TWEDLAFLREWT------DLPIVLK-----GILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDR- 308 (383)
T ss_pred CHHHHHHHHHhc------CCCEEEe-----cCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCC-
Q ss_pred CCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 365 KPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 365 KPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
.|++++.-+- .-.||+.|+..|+|++++.
T Consensus 309 ~~vi~dGGIr------------~G~Dv~KALaLGA~~v~iG 337 (383)
T cd03332 309 LTVLFDSGVR------------TGADIMKALALGAKAVLIG 337 (383)
T ss_pred CeEEEeCCcC------------cHHHHHHHHHcCCCEEEEc
No 345
>PRK06815 hypothetical protein; Provisional
Probab=45.14 E-value=2e+02 Score=30.26 Aligned_cols=119 Identities=14% Similarity=0.155 Sum_probs=70.1
Q ss_pred HHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhhh
Q 008172 355 IIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSRE 434 (575)
Q Consensus 355 ~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 434 (575)
-+...|+..|.|+.+.. |..+.-..+...-..|++.+...++ | .++.+...++.++-..+
T Consensus 82 alA~~a~~~G~~~~i~~-----------p~~~~~~k~~~~~~~GA~V~~~~~~-----~-~~~~~~a~~~~~~~~~~--- 141 (317)
T PRK06815 82 GVALAAKLAGIPVTVYA-----------PEQASAIKLDAIRALGAEVRLYGGD-----A-LNAELAARRAAEQQGKV--- 141 (317)
T ss_pred HHHHHHHHhCCCEEEEE-----------CCCCCHHHHHHHHHCCCEEEEECCC-----H-HHHHHHHHHHHHhcCCE---
Confidence 46678999999999852 3333233445556789999888643 2 34544433332211110
Q ss_pred hhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhc-CCcEEEEEcCChhHHHHH----hccCCCCcEEEEcCcH
Q 008172 435 ENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNL-GVDAIFVYTKHGHMASLL----SRNRPNPPIFAFTNDD 504 (575)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~-~AkaIVVfT~SG~TAr~V----Sr~RP~~PIiAvT~~~ 504 (575)
+..+... + ...+.....+.|+.+++ ..+.||+..-+|.++--+ ..+.|...|+++.|..
T Consensus 142 --------~~~~~~~--~-~~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~ 205 (317)
T PRK06815 142 --------YISPYND--P-QVIAGQGTIGMELVEQQPDLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPAN 205 (317)
T ss_pred --------EecCCCC--h-hhhcchhHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 1111111 1 11223344566677666 368999999999866544 4466999999998764
No 346
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.07 E-value=86 Score=32.85 Aligned_cols=65 Identities=20% Similarity=0.295 Sum_probs=48.6
Q ss_pred CccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEee--ecCHHHHhcHHHHHhc-CCEEEEeC
Q 008172 264 SKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAK--IENLESLQKFEEIVEA-SDGIMVAR 337 (575)
Q Consensus 264 sekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaK--IEt~~av~nldeI~~~-sDgImIaR 337 (575)
+-.+.+.+..|++.|+|+|.+.. -++++++++.+.+. .++.+.|- | -.+|+.++++. +|+|-++.
T Consensus 195 Ev~tleea~eA~~~gaD~I~LD~-~~~e~l~~~v~~~~----~~i~leAsGGI----t~~ni~~~a~tGvD~Isvg~ 262 (277)
T PRK05742 195 EVESLDELRQALAAGADIVMLDE-LSLDDMREAVRLTA----GRAKLEASGGI----NESTLRVIAETGVDYISIGA 262 (277)
T ss_pred EeCCHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHhC----CCCcEEEECCC----CHHHHHHHHHcCCCEEEECh
Confidence 34568888899999999999975 48889988887663 23443332 4 25688899988 99999864
No 347
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=44.84 E-value=3.9e+02 Score=27.97 Aligned_cols=159 Identities=13% Similarity=0.109 Sum_probs=92.3
Q ss_pred cCCCCCccCHHHH----HHHHHcCCCEEEecCcCChhh---HHHHHHHHh---ccCCCCceEEeeecCHHHHhcHHHHHh
Q 008172 259 GLPTLSKKDWDDI----EFGIAEGVDFIAMSFVCDADS---VRHLKKYVS---GKSSRSIKVLAKIENLESLQKFEEIVE 328 (575)
Q Consensus 259 ~lp~lsekD~~di----~~al~~gvd~I~~SfV~sa~d---v~~ir~~l~---~~~~~~i~IIaKIEt~~av~nldeI~~ 328 (575)
.+|+++--+.+.+ +-|-+.+...|+.-.....+. ...+..++. ++. +.+.+.....+-.-++.+.+-+.
T Consensus 17 av~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~vpv~lhlDH~~~~e~i~~ai~ 95 (282)
T TIGR01859 17 AVGAFNFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERM-SIVPVALHLDHGSSYESCIKAIK 95 (282)
T ss_pred eEEEEEECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHC-CCCeEEEECCCCCCHHHHHHHHH
Confidence 3444444444444 344566777776543322221 222222222 221 12789999886655666656666
Q ss_pred c-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhH---HhhhcC---CCCChhhHhhHHHHHH-cccc
Q 008172 329 A-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLL---ESMVEY---PTPTRAEVADVSEAVR-QYAD 400 (575)
Q Consensus 329 ~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~L---eSM~~~---p~PtrAEv~Dv~nav~-~G~D 400 (575)
. .+-||+..-+| |.++....-+++.+.|+.+|.+|-.....+ |.+... ..-+ ..++..|+. .|+|
T Consensus 96 ~Gf~sVmid~s~l----~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~---~eea~~f~~~tgvD 168 (282)
T TIGR01859 96 AGFSSVMIDGSHL----PFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELAD---PDEAEQFVKETGVD 168 (282)
T ss_pred cCCCEEEECCCCC----CHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCC---HHHHHHHHHHHCcC
Confidence 5 78999986665 777778888999999999998766433222 111110 1112 333466775 7999
Q ss_pred eEEeccCcCCCCC---HHHHHHHHHHHH
Q 008172 401 ALMLSGESAIGPF---GQKAVSVLQMAS 425 (575)
Q Consensus 401 ~vmLs~ETa~G~y---PveaV~~m~~I~ 425 (575)
.+-.|--|..|.| |.--.+.++.|.
T Consensus 169 ~Lavs~Gt~hg~~~~~~~l~~e~L~~i~ 196 (282)
T TIGR01859 169 YLAAAIGTSHGKYKGEPGLDFERLKEIK 196 (282)
T ss_pred EEeeccCccccccCCCCccCHHHHHHHH
Confidence 9998877777777 333344455444
No 348
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=44.51 E-value=21 Score=39.05 Aligned_cols=81 Identities=17% Similarity=0.162 Sum_probs=51.9
Q ss_pred hcCCcEEEEEcCChhHHHHHhc----cCCCCcEEEEcCcHHHHHHhcccCCcEEEEecCCC------CHHHHH--HHHHH
Q 008172 469 NLGVDAIFVYTKHGHMASLLSR----NRPNPPIFAFTNDDSTRMALNLQWGVIPVLVNLSD------DMETNI--AKTID 536 (575)
Q Consensus 469 ~~~AkaIVVfT~SG~TAr~VSr----~RP~~PIiAvT~~~~~aR~L~L~~GV~Pvl~~~~~------d~d~~i--~~al~ 536 (575)
+..++.++|-|.||.||--+|. -.|..|-|.|||=- -+.| ..-|++++... +.+.+- -...
T Consensus 283 ~vq~DGliVaTPTGSTAYS~sAGGSlvhP~vpAIlvTPIC--PhSL----SFRPIIlPds~~L~I~i~~dsR~~awvSf- 355 (409)
T KOG2178|consen 283 KVQGDGLIVATPTGSTAYSASAGGSLVHPSVPAILVTPIC--PHSL----SFRPIILPDSSELRVEVPLDSRSTAWVSF- 355 (409)
T ss_pred EEecceEEEecCCchhhhHhhcCCceecCCCCeEEEeccC--CCcc----cccceEccCccEEEEEeCccccccceEEe-
Confidence 4578999999999999998876 78999999998621 1222 23455554321 112110 0001
Q ss_pred HHHHcCCCCCCCEEEEEecC
Q 008172 537 LIKMKGMVKYGDAVLVVLDL 556 (575)
Q Consensus 537 ~~~~~g~~k~GD~VVvv~G~ 556 (575)
-.+.+.-+..||.+.+++..
T Consensus 356 DG~~r~El~~GD~i~I~tS~ 375 (409)
T KOG2178|consen 356 DGRPRQELSLGDYIDITTSR 375 (409)
T ss_pred cCcchhhccCCceEEEEecc
Confidence 14455668899999998653
No 349
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=44.49 E-value=4.2e+02 Score=28.59 Aligned_cols=98 Identities=14% Similarity=0.206 Sum_probs=61.9
Q ss_pred EeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhh
Q 008172 311 LAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVAD 390 (575)
Q Consensus 311 IaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~D 390 (575)
+..-+++.--..+.++ -+-.+|--....|.-.|+. =|..-+.+++. ...||++.- ..-+. +|
T Consensus 202 ~yc~~d~~~a~~l~~~--g~~avmPl~~pIGsg~gv~-~p~~i~~~~e~---~~vpVivdA---------GIg~~---sd 263 (326)
T PRK11840 202 VYCSDDPIAAKRLEDA--GAVAVMPLGAPIGSGLGIQ-NPYTIRLIVEG---ATVPVLVDA---------GVGTA---SD 263 (326)
T ss_pred EEeCCCHHHHHHHHhc--CCEEEeeccccccCCCCCC-CHHHHHHHHHc---CCCcEEEeC---------CCCCH---HH
Confidence 3444444444444443 1344444345555555555 34555555544 568998842 33333 58
Q ss_pred HHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHH
Q 008172 391 VSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASS 426 (575)
Q Consensus 391 v~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~ 426 (575)
++.|+..|+|++++..=-+..+.|+.--+.|+.-++
T Consensus 264 a~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 264 AAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVE 299 (326)
T ss_pred HHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHH
Confidence 899999999999999888999999877776665543
No 350
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=44.37 E-value=51 Score=35.08 Aligned_cols=67 Identities=19% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEecCcCCh------------------hhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc
Q 008172 268 WDDIEFGIAEGVDFIAMSFVCDA------------------DSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA 329 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV~sa------------------~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~ 329 (575)
.+.++.+.+.|+|.|.+. -|++ +.+.++++.+ .++.||+- =.....++..+.++-
T Consensus 144 ~~~~~~l~~~G~~~itvH-gRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~-----~~ipVi~N-GdI~s~~da~~~l~g 216 (318)
T TIGR00742 144 CDFVEIVSGKGCQNFIVH-ARKAWLSGLSPKENREIPPLRYERVYQLKKDF-----PHLTIEIN-GGIKNSEQIKQHLSH 216 (318)
T ss_pred HHHHHHHHHcCCCEEEEe-CCchhhcCCCccccccCCchhHHHHHHHHHhC-----CCCcEEEE-CCcCCHHHHHHHHhC
Q ss_pred CCEEEEeCCCCC
Q 008172 330 SDGIMVARGDLG 341 (575)
Q Consensus 330 sDgImIaRGDLg 341 (575)
+||+|||||=|+
T Consensus 217 ~dgVMigRgal~ 228 (318)
T TIGR00742 217 VDGVMVGREAYE 228 (318)
T ss_pred CCEEEECHHHHh
No 351
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=44.25 E-value=1.2e+02 Score=31.57 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=48.6
Q ss_pred CCccCHHH-HHHHHHcC-CCEEEecCcCCh--hhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCC
Q 008172 263 LSKKDWDD-IEFGIAEG-VDFIAMSFVCDA--DSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARG 338 (575)
Q Consensus 263 lsekD~~d-i~~al~~g-vd~I~~SfV~sa--~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRG 338 (575)
|.+.+.++ ++.++..+ +|.|++|=..+. -|...++.+-+... +-..+++ +=-..+|+.++++.+||+.|+-+
T Consensus 154 l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~-~~Pvllg---gGvt~eNv~e~l~~adGviVgS~ 229 (257)
T TIGR00259 154 LGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETVK-DTPVLAG---SGVNLENVEELLSIADGVIVATT 229 (257)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccC-CCeEEEE---CCCCHHHHHHHHhhCCEEEECCC
Confidence 77788755 55667776 999999998776 44555555432221 2234444 33356799999999999999854
No 352
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=44.00 E-value=1.9e+02 Score=31.38 Aligned_cols=151 Identities=16% Similarity=0.184 Sum_probs=90.3
Q ss_pred cccCCCCCccCHHHH-------HHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc
Q 008172 257 NHGLPTLSKKDWDDI-------EFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA 329 (575)
Q Consensus 257 ~~~lp~lsekD~~di-------~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~ 329 (575)
++..-.+|-.|-.|+ +..-+.|+|.|=++ |.+.+++..++++-++. ++.++|-|--.- =--++.+-.-
T Consensus 21 PI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvt-v~~~e~A~A~~~Ik~~~---~vPLVaDiHf~~-rla~~~~~~g 95 (361)
T COG0821 21 PIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVT-VPDMEAAEALKEIKQRL---NVPLVADIHFDY-RLALEAAECG 95 (361)
T ss_pred ceEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEe-cCCHHHHHHHHHHHHhC---CCCEEEEeeccH-HHHHHhhhcC
Confidence 333444554444444 44556899996554 45555555555544332 588999885431 1112222222
Q ss_pred CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe-------hhhHHhhhcCCCCChhhH-----hhHHHHHHc
Q 008172 330 SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA-------SQLLESMVEYPTPTRAEV-----ADVSEAVRQ 397 (575)
Q Consensus 330 sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva-------Tq~LeSM~~~p~PtrAEv-----~Dv~nav~~ 397 (575)
.|.+-|.||..|-.= --+.++++|+++|||+=+- -++|+... .||+.-+ ..+.-+-..
T Consensus 96 ~~k~RINPGNig~~~-------~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~---~pt~ealveSAl~~a~~~e~l 165 (361)
T COG0821 96 VDKVRINPGNIGFKD-------RVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYG---GPTPEALVESALEHAELLEEL 165 (361)
T ss_pred cceEEECCcccCcHH-------HHHHHHHHHHHcCCCEEEecccCchhHHHHHHhc---CCCHHHHHHHHHHHHHHHHHC
Confidence 899999999886543 4578999999999998653 23444332 5676553 233336678
Q ss_pred ccceEEeccCcCCCCCHHHHHHHHHHHH
Q 008172 398 YADALMLSGESAIGPFGQKAVSVLQMAS 425 (575)
Q Consensus 398 G~D~vmLs~ETa~G~yPveaV~~m~~I~ 425 (575)
|++=+.+|--. ..|.++|+.-+.++
T Consensus 166 ~f~~i~iS~K~---Sdv~~~v~aYr~lA 190 (361)
T COG0821 166 GFDDIKVSVKA---SDVQLMVAAYRLLA 190 (361)
T ss_pred CCCcEEEEEEc---CCHHHHHHHHHHHH
Confidence 88888888443 34555655544443
No 353
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=43.99 E-value=2.9e+02 Score=29.09 Aligned_cols=154 Identities=14% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccC-----------------------------CCCceEEeeecCHH
Q 008172 268 WDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKS-----------------------------SRSIKVLAKIENLE 318 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~-----------------------------~~~i~IIaKIEt~~ 318 (575)
.+.++.|.+.|.- |..-.+.+.+.++.+-+.-.+.+ ...+.|...+.+-.
T Consensus 5 k~ll~~A~~~~yA-V~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~ 83 (282)
T TIGR01858 5 KYMLQDAQAGGYA-VPAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDHHE 83 (282)
T ss_pred HHHHHHHHHcCCe-EEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_pred HHhcHHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCE--------EEehhhHHhhhcCCCCChhhHh
Q 008172 319 SLQKFEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPV--------IVASQLLESMVEYPTPTRAEVA 389 (575)
Q Consensus 319 av~nldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPv--------ivaTq~LeSM~~~p~PtrAEv~ 389 (575)
-++.+.+=++. .+-||+. |-++|+++=...-+++++.|++.|.+| +.-..+.........-+.+|+.
T Consensus 84 ~~e~i~~ai~~GFtSVM~D----gS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~ 159 (282)
T TIGR01858 84 SLDDIRQKVHAGVRSAMID----GSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAK 159 (282)
T ss_pred CHHHHHHHHHcCCCEEeec----CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHH
Q ss_pred hHHHHHHcccceEEeccCcCCCCC---HHHHHHHHHHHHHHH
Q 008172 390 DVSEAVRQYADALMLSGESAIGPF---GQKAVSVLQMASSRM 428 (575)
Q Consensus 390 Dv~nav~~G~D~vmLs~ETa~G~y---PveaV~~m~~I~~~a 428 (575)
+... .-|+|++-.+=-|+-|.| |.--...|.+|.+..
T Consensus 160 ~Fv~--~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~ 199 (282)
T TIGR01858 160 EFVE--ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVV 199 (282)
T ss_pred HHHH--HHCcCEEecccCccccCcCCCCccCHHHHHHHHHHh
No 354
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=43.98 E-value=52 Score=33.41 Aligned_cols=86 Identities=24% Similarity=0.273 Sum_probs=55.6
Q ss_pred hHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 292 SVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 292 dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
.++.+++.+.+.+ .++.|.+--+... -+|+++++.. .|.|+.+= .. +.....+.+.|+++++|+|.+
T Consensus 66 Kae~~~~~l~~in-P~~~V~~~~~~i~-~~~~~~l~~~~~D~Vvdai---------D~-~~~k~~L~~~c~~~~ip~I~s 133 (231)
T cd00755 66 KVEVMAERIRDIN-PECEVDAVEEFLT-PDNSEDLLGGDPDFVVDAI---------DS-IRAKVALIAYCRKRKIPVISS 133 (231)
T ss_pred HHHHHHHHHHHHC-CCcEEEEeeeecC-HhHHHHHhcCCCCEEEEcC---------CC-HHHHHHHHHHHHHhCCCEEEE
Confidence 3455566666665 4555554433322 2577777753 78888862 22 345667999999999999975
Q ss_pred hhhHHhhhcCCCCChhhHhhHHH
Q 008172 371 SQLLESMVEYPTPTRAEVADVSE 393 (575)
Q Consensus 371 Tq~LeSM~~~p~PtrAEv~Dv~n 393 (575)
. +.=..-.||+-++.|++.
T Consensus 134 ~----g~g~~~dp~~i~i~di~~ 152 (231)
T cd00755 134 M----GAGGKLDPTRIRVADISK 152 (231)
T ss_pred e----CCcCCCCCCeEEEccEec
Confidence 2 222345799988888855
No 355
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=43.97 E-value=4.8e+02 Score=28.74 Aligned_cols=148 Identities=14% Similarity=0.274 Sum_probs=84.1
Q ss_pred CccCHHHHH-HHHHcCCCEEEecC----c-----------CChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHH
Q 008172 264 SKKDWDDIE-FGIAEGVDFIAMSF----V-----------CDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIV 327 (575)
Q Consensus 264 sekD~~di~-~al~~gvd~I~~Sf----V-----------~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~ 327 (575)
++.|..++. ..-+.|+|+|-+.| . ++++-+.++-+.++.. .++.+++||= + -+.++.+++
T Consensus 125 s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~--~~iPv~vKLs-P-n~t~i~~ia 200 (385)
T PLN02495 125 NKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK--ATVPVWAKMT-P-NITDITQPA 200 (385)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh--hcCceEEEeC-C-ChhhHHHHH
Confidence 456665544 44467899987655 3 4556666665555443 2578999995 2 233455555
Q ss_pred hc-----CCEEEEe-----CCCCCCCC--C------------C---CChHHHHHHHHHHHHHc------CCCEEEehhhH
Q 008172 328 EA-----SDGIMVA-----RGDLGVDI--P------------L---EQIPTVQEIIIHVCRQL------NKPVIVASQLL 374 (575)
Q Consensus 328 ~~-----sDgImIa-----RGDLg~e~--~------------~---e~v~~~Qk~Ii~~c~~~------gKPvivaTq~L 374 (575)
+. +|||..- +-++-++. | + .--|.+.+.+-+.+++. +.|++-.+-+-
T Consensus 201 ~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~ 280 (385)
T PLN02495 201 RVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVE 280 (385)
T ss_pred HHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCC
Confidence 53 7888652 11110010 0 1 12244444433333332 47888765544
Q ss_pred HhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCC-HHHHHHHHHHHHHHHhhhhh
Q 008172 375 ESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPF-GQKAVSVLQMASSRMELWSR 433 (575)
Q Consensus 375 eSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~y-PveaV~~m~~I~~~aE~~~~ 433 (575)
--.|++.+++.|||+|++. |+.-.+ | ..+.+|+++-+.|+.
T Consensus 281 ------------s~~Da~e~i~aGAs~VQv~--Ta~~~~Gp----~vi~~i~~~L~~~m~ 322 (385)
T PLN02495 281 ------------TGGDAAEFILLGADTVQVC--TGVMMHGY----PLVKNLCAELQDFMK 322 (385)
T ss_pred ------------CHHHHHHHHHhCCCceeEe--eeeeecCc----HHHHHHHHHHHHHHH
Confidence 4578999999999999997 444445 4 334455555555543
No 356
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=43.89 E-value=65 Score=33.50 Aligned_cols=66 Identities=18% Similarity=0.329 Sum_probs=48.0
Q ss_pred CCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEe--eecCHHHHhcHHHHHhc-CCEEEEeC
Q 008172 263 LSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLA--KIENLESLQKFEEIVEA-SDGIMVAR 337 (575)
Q Consensus 263 lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIa--KIEt~~av~nldeI~~~-sDgImIaR 337 (575)
++-.+.+.+..|++.|+|+|.+..+ ++++++++.+.+.. ++.+.| =| -.+|+.++++. +|+|-++.
T Consensus 187 vev~s~eea~~A~~~gaDyI~ld~~-~~e~l~~~~~~~~~----~ipi~AiGGI----~~~ni~~~a~~Gvd~Iav~s 255 (268)
T cd01572 187 VEVETLEQLKEALEAGADIIMLDNM-SPEELREAVALLKG----RVLLEASGGI----TLENIRAYAETGVDYISVGA 255 (268)
T ss_pred EEECCHHHHHHHHHcCCCEEEECCc-CHHHHHHHHHHcCC----CCcEEEECCC----CHHHHHHHHHcCCCEEEEEe
Confidence 3445678889999999999999988 47888887776532 233222 23 24789999988 99999864
No 357
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=43.82 E-value=3.4e+02 Score=26.98 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=58.2
Q ss_pred CHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc----CCEEEEeCCCCCC
Q 008172 267 DWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA----SDGIMVARGDLGV 342 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~----sDgImIaRGDLg~ 342 (575)
+.++++.+++.|+||+..|.. +.+-++. + ... ...++.=..| ..|+.+. +|.+-+=+.+
T Consensus 72 ~~~~~~~a~~aGA~fivsp~~-~~~v~~~-~---~~~---~~~~~~G~~t------~~E~~~A~~~Gad~vk~Fpa~--- 134 (206)
T PRK09140 72 SPEQVDRLADAGGRLIVTPNT-DPEVIRR-A---VAL---GMVVMPGVAT------PTEAFAALRAGAQALKLFPAS--- 134 (206)
T ss_pred CHHHHHHHHHcCCCEEECCCC-CHHHHHH-H---HHC---CCcEEcccCC------HHHHHHHHHcCCCEEEECCCC---
Confidence 456778899999999988763 3322222 2 222 2445553444 4444444 7998873322
Q ss_pred CCCCCChHHHHHHHHHHHHHc--CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccC
Q 008172 343 DIPLEQIPTVQEIIIHVCRQL--NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGE 407 (575)
Q Consensus 343 e~~~e~v~~~Qk~Ii~~c~~~--gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~E 407 (575)
.+|++. +-..+... ..|++...-+ ...++......|+|++-+++.
T Consensus 135 ~~G~~~-------l~~l~~~~~~~ipvvaiGGI-------------~~~n~~~~~~aGa~~vav~s~ 181 (206)
T PRK09140 135 QLGPAG-------IKALRAVLPPDVPVFAVGGV-------------TPENLAPYLAAGAAGFGLGSA 181 (206)
T ss_pred CCCHHH-------HHHHHhhcCCCCeEEEECCC-------------CHHHHHHHHHCCCeEEEEehH
Confidence 123222 21222222 4787653221 125567788899999998654
No 358
>PRK15005 universal stress protein F; Provisional
Probab=43.77 E-value=47 Score=29.76 Aligned_cols=40 Identities=15% Similarity=0.304 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCcEEEEEcCC--------hhHHHHHhccCCCCcEEEE
Q 008172 460 CNCAVDMANNLGVDAIFVYTKH--------GHMASLLSRNRPNPPIFAF 500 (575)
Q Consensus 460 a~~av~~a~~~~AkaIVVfT~S--------G~TAr~VSr~RP~~PIiAv 500 (575)
+...++.|.+.+++.||+-|+. |+++..+.+.-| |||+.+
T Consensus 96 ~~~I~~~a~~~~~DLIV~Gs~~~~~~~~llGS~a~~vl~~a~-cpVlvV 143 (144)
T PRK15005 96 KDRILELAKKIPADMIIIASHRPDITTYLLGSNAAAVVRHAE-CSVLVV 143 (144)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCchheeecchHHHHHHhCC-CCEEEe
Confidence 3445667889999999998764 557777777766 888875
No 359
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=43.76 E-value=38 Score=34.58 Aligned_cols=101 Identities=10% Similarity=-0.002 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEcCChhHHHHHhccCCCC-cEEEEcCcHHHHHHhcccCCcEEEEecCCCC--HHHHH-
Q 008172 456 AEQICNCAVDMANNLGVDAIFVYTKHGHMASLLSRNRPNP-PIFAFTNDDSTRMALNLQWGVIPVLVNLSDD--METNI- 531 (575)
Q Consensus 456 ~~~ia~~av~~a~~~~AkaIVVfT~SG~TAr~VSr~RP~~-PIiAvT~~~~~aR~L~L~~GV~Pvl~~~~~d--~d~~i- 531 (575)
...||..|.++-.. .+ .+|=.+|.|...++++-|.. ++-.+|++..++..|.-.-++.-++....-. .....
T Consensus 79 K~~IA~~Aa~lI~~--g~--tIflD~GtT~~~la~~L~~~~~ltvvTnsl~i~~~l~~~~~~~villGG~~~~~~~~~~G 154 (252)
T PRK10681 79 KRRAAQLAATLVEP--NQ--TLFFDCGTTTPWIIEAIDNELPFTAVCYSLNTFLALQEKPHCRAILCGGEFHASNAIFKP 154 (252)
T ss_pred HHHHHHHHHhhcCC--CC--EEEEECCccHHHHHHhcCCCCCeEEEECCHHHHHHHhhCCCCEEEEECcEEecCcceeeC
Confidence 46677777665433 33 35667899999999998864 8999999999999998777777666643211 11111
Q ss_pred HHHHHHHHHcCCCCCCCEEEEEecCCCCCCCc
Q 008172 532 AKTIDLIKMKGMVKYGDAVLVVLDLTPAHVTS 563 (575)
Q Consensus 532 ~~al~~~~~~g~~k~GD~VVvv~G~~~~~g~t 563 (575)
..+++.+.+ ++..=.++-+.|+....|.|
T Consensus 155 ~~~~~~l~~---~~~D~afig~~gi~~~~G~~ 183 (252)
T PRK10681 155 LDFQQTLDN---ICPDIAFYSAAGVHVSKGAT 183 (252)
T ss_pred HHHHHHHHh---hCCCEEEEeCceecCCCCcC
Confidence 112233332 34555556666665544544
No 360
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=43.54 E-value=1.2e+02 Score=30.75 Aligned_cols=104 Identities=14% Similarity=0.169 Sum_probs=65.1
Q ss_pred EEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHH--------
Q 008172 282 IAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQ-------- 353 (575)
Q Consensus 282 I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Q-------- 353 (575)
|.+=-..+.++...+-+.+-+.|.+ .|=--.-|+.+.+-|.++.+....++||-|=. +..+.+..+.
T Consensus 16 I~Vlr~~~~e~a~~~a~Ali~gGi~--~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTV---L~~~q~~~a~~aGa~fiV 90 (211)
T COG0800 16 VPVIRGDDVEEALPLAKALIEGGIP--AIEITLRTPAALEAIRALAKEFPEALIGAGTV---LNPEQARQAIAAGAQFIV 90 (211)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCC--eEEEecCCCCHHHHHHHHHHhCcccEEccccc---cCHHHHHHHHHcCCCEEE
Confidence 3344445666666666655554422 22233456667777777777766677765532 2333333333
Q ss_pred -----HHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEe
Q 008172 354 -----EIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALML 404 (575)
Q Consensus 354 -----k~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmL 404 (575)
.++++.|+.+|.|++ |--+-.+++..|...|++++=+
T Consensus 91 sP~~~~ev~~~a~~~~ip~~--------------PG~~TptEi~~Ale~G~~~lK~ 132 (211)
T COG0800 91 SPGLNPEVAKAANRYGIPYI--------------PGVATPTEIMAALELGASALKF 132 (211)
T ss_pred CCCCCHHHHHHHHhCCCccc--------------CCCCCHHHHHHHHHcChhheee
Confidence 589999999999998 4444455668899999998755
No 361
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=43.45 E-value=1.2e+02 Score=26.91 Aligned_cols=69 Identities=10% Similarity=0.120 Sum_probs=51.0
Q ss_pred cCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCC
Q 008172 287 VCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKP 366 (575)
Q Consensus 287 V~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKP 366 (575)
..|.--+..++++++++| -++.|.+. ++..+++.+.-.|.|+++ +.+....+++-+.|...|+|
T Consensus 11 aSSs~la~km~~~a~~~g-i~~~i~a~-----~~~e~~~~~~~~Dvill~----------PQv~~~~~~i~~~~~~~~ip 74 (99)
T cd05565 11 GTSGLLANALNKGAKERG-VPLEAAAG-----AYGSHYDMIPDYDLVILA----------PQMASYYDELKKDTDRLGIK 74 (99)
T ss_pred CCHHHHHHHHHHHHHHCC-CcEEEEEe-----eHHHHHHhccCCCEEEEc----------ChHHHHHHHHHHHhhhcCCC
Confidence 344455778899998887 34444443 455567777778999997 67778888999999999999
Q ss_pred EEEeh
Q 008172 367 VIVAS 371 (575)
Q Consensus 367 vivaT 371 (575)
|.+-.
T Consensus 75 v~~I~ 79 (99)
T cd05565 75 LVTTT 79 (99)
T ss_pred EEEeC
Confidence 98743
No 362
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=43.40 E-value=73 Score=34.78 Aligned_cols=69 Identities=10% Similarity=0.160 Sum_probs=44.2
Q ss_pred CHHHHHHHHHcCCCEEEecCcC------ChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc----CCEEEEe
Q 008172 267 DWDDIEFGIAEGVDFIAMSFVC------DADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA----SDGIMVA 336 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~SfV~------sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~----sDgImIa 336 (575)
..+|.+.+.+.|+|+|.+|.-- .+..+..+.+.....+ .++.||+- .||.+-.+|++. +|++|||
T Consensus 238 ~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~-~~i~vi~d----GGIr~g~Dv~KaLalGAd~V~ig 312 (367)
T TIGR02708 238 CPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVD-KRVPIVFD----SGVRRGQHVFKALASGADLVALG 312 (367)
T ss_pred CHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhC-CCCcEEee----CCcCCHHHHHHHHHcCCCEEEEc
Confidence 3788899999999999988632 1223344444333222 34566663 466666666555 8999999
Q ss_pred CCCC
Q 008172 337 RGDL 340 (575)
Q Consensus 337 RGDL 340 (575)
|-=|
T Consensus 313 R~~l 316 (367)
T TIGR02708 313 RPVI 316 (367)
T ss_pred HHHH
Confidence 8744
No 363
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=43.36 E-value=58 Score=33.09 Aligned_cols=174 Identities=16% Similarity=0.213 Sum_probs=88.9
Q ss_pred HHHhcHHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHH
Q 008172 318 ESLQKFEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVR 396 (575)
Q Consensus 318 ~av~nldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~ 396 (575)
...+.++.+.+. .|+|||| |=+++.- .-....+++.+++..|+++ .|.- .+.+.
T Consensus 15 ~~~~~~~~~~~~gtdai~vG-GS~~vt~------~~~~~~v~~ik~~~lPvil------------fp~~------~~~i~ 69 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILIG-GSQGVTY------EKTDTLIEALRRYGLPIIL------------FPSN------PTNVS 69 (223)
T ss_pred ccHHHHHHHHhcCCCEEEEc-CCCcccH------HHHHHHHHHHhccCCCEEE------------eCCC------ccccC
Confidence 355567777777 8999998 4333322 2334566777888999997 3432 23446
Q ss_pred cccceEEecc------CcCCCCCHHHHHHHHHHHHHH--HhhhhhhhhhHHhhhcccccC--CCCCCchhhHHHHHHHHH
Q 008172 397 QYADALMLSG------ESAIGPFGQKAVSVLQMASSR--MELWSREENRQSALCGQRQLG--ESLHDRIAEQICNCAVDM 466 (575)
Q Consensus 397 ~G~D~vmLs~------ETa~G~yPveaV~~m~~I~~~--aE~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ia~~av~~ 466 (575)
.|+|+++.-. ..++-..-.+++..+.+...+ .|-|.--..- . ....+. ...|.+..+ ++..+..+
T Consensus 70 ~~aDa~l~~svlNs~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~-~---~v~~v~~a~~~p~~~~~-~aa~~~lA 144 (223)
T TIGR01768 70 RDADALFFPSVLNSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPG-G---AAARVTKAKPIPYDKED-LAAYAAMA 144 (223)
T ss_pred cCCCEEEEEEeecCCCchHHHhHHHHHHHHHhhhcceecceEEEEECCC-c---ceeecccccccCCCcHH-HHHHHHHH
Confidence 7899987632 112112224444444333211 1111100000 0 000011 112233334 44445556
Q ss_pred HHhcCCcEEEEEcCChh-------HHHHHhccCCCCcEEEE--cCcHHHHHHhcccCCcEEEEec
Q 008172 467 ANNLGVDAIFVYTKHGH-------MASLLSRNRPNPPIFAF--TNDDSTRMALNLQWGVIPVLVN 522 (575)
Q Consensus 467 a~~~~AkaIVVfT~SG~-------TAr~VSr~RP~~PIiAv--T~~~~~aR~L~L~~GV~Pvl~~ 522 (575)
++-++-+.+..---||+ ..+.+.+.-...||+.- -++.+.++++ +.+|.--+.+.
T Consensus 145 ~~~~g~~~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l-~~aGAD~VVVG 208 (223)
T TIGR01768 145 EEMLGMPIIYLEAGSGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREM-AEAGADTIVTG 208 (223)
T ss_pred HHHcCCcEEEEEecCCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHH-HHcCCCEEEEC
Confidence 66678885555544443 34455555456788554 4677777776 45566666654
No 364
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=43.24 E-value=94 Score=31.67 Aligned_cols=67 Identities=10% Similarity=0.195 Sum_probs=45.1
Q ss_pred hHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 292 SVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 292 dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
.+..+++.+.+.+ .++.|.+.-+..+ -+|++++++-.|.|+.+-. -+.....+-+.|+++++|++.+
T Consensus 87 Ka~~a~~~l~~ln-p~v~i~~~~~~i~-~~~~~~~~~~~DiVi~~~D----------~~~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 87 KVESARAALARIN-PHIAIETINARLD-DDELAALIAGHDLVLDCTD----------NVATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred HHHHHHHHHHHHC-CCCEEEEEeccCC-HHHHHHHHhcCCEEEecCC----------CHHHHHHHHHHHHHhCCEEEEe
Confidence 3445555566555 5566655433332 2577888888998888722 2356678889999999999975
No 365
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.23 E-value=69 Score=33.55 Aligned_cols=67 Identities=19% Similarity=0.263 Sum_probs=49.0
Q ss_pred CCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCce--EEeeecCHHHHhcHHHHHhc-CCEEEEeC
Q 008172 262 TLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIK--VLAKIENLESLQKFEEIVEA-SDGIMVAR 337 (575)
Q Consensus 262 ~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~--IIaKIEt~~av~nldeI~~~-sDgImIaR 337 (575)
.++-.+.+.++.|.+.|+|+|.+.. -+.++++++++.+. ..+. .+-=| -.+|+.++++. +|+|-++.
T Consensus 192 gvsv~tleea~~A~~~gaDyI~lD~-~~~e~l~~~~~~~~----~~i~i~AiGGI----t~~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 192 EVETETEEQVREAVAAGADIIMFDN-RTPDEIREFVKLVP----SAIVTEASGGI----TLENLPAYGGTGVDYISLGF 261 (277)
T ss_pred EEEeCCHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHhcC----CCceEEEECCC----CHHHHHHHHHcCCCEEEECh
Confidence 3455678889999999999999975 57788888887653 1233 22223 35688899988 99999864
No 366
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=43.14 E-value=59 Score=35.26 Aligned_cols=92 Identities=23% Similarity=0.282 Sum_probs=52.0
Q ss_pred CHHHHHHHHHcCCCEEEe-----------cCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc--CCEE
Q 008172 267 DWDDIEFGIAEGVDFIAM-----------SFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA--SDGI 333 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~-----------SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~--sDgI 333 (575)
-.+..+...+.|++++.+ ++.-+-+.++++|+.+ .++.+||-= +...++..+.+++. +|||
T Consensus 157 Tvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~-----~~ipviaNG-nI~~~~d~~~~~~~tG~dGV 230 (358)
T KOG2335|consen 157 TVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENV-----PDIPVIANG-NILSLEDVERCLKYTGADGV 230 (358)
T ss_pred HHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhC-----cCCcEEeeC-CcCcHHHHHHHHHHhCCceE
Confidence 345556778899999876 2222333444455444 226666641 22344566677774 8999
Q ss_pred EEeCCCCCCCCCC------CChHHHHHHHHHHHHHcC
Q 008172 334 MVARGDLGVDIPL------EQIPTVQEIIIHVCRQLN 364 (575)
Q Consensus 334 mIaRGDLg~e~~~------e~v~~~Qk~Ii~~c~~~g 364 (575)
|+|||-|--..=+ +.....-.+-.+.|.+++
T Consensus 231 M~arglL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~ 267 (358)
T KOG2335|consen 231 MSARGLLYNPALFLTAGYGPTPWGCVEEYLDIAREFG 267 (358)
T ss_pred EecchhhcCchhhccCCCCCCHHHHHHHHHHHHHHcC
Confidence 9999987422111 222333445555566655
No 367
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=43.01 E-value=2.9e+02 Score=30.06 Aligned_cols=95 Identities=13% Similarity=0.139 Sum_probs=57.8
Q ss_pred ccCHH-HHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHH-----------hcHHHHHhc-CC
Q 008172 265 KKDWD-DIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESL-----------QKFEEIVEA-SD 331 (575)
Q Consensus 265 ekD~~-di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av-----------~nldeI~~~-sD 331 (575)
-.|++ .++.+.+.|+|.++++ .-.++.+..... .++.+|.|+-+...+ -..++-++. +|
T Consensus 90 l~dp~~~i~~a~~~g~dAv~~~-------~G~l~~~~~~~~-~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAd 161 (348)
T PRK09250 90 YFDPENIVKLAIEAGCNAVAST-------LGVLEAVARKYA-HKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAV 161 (348)
T ss_pred ccCHHHHHHHHHhcCCCEEEeC-------HHHHHhcccccc-CCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCC
Confidence 34655 5677889999999998 223333222222 357788888764444 246777777 88
Q ss_pred EEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEE
Q 008172 332 GIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIV 369 (575)
Q Consensus 332 gImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviv 369 (575)
++-+. -.+|-+.. .+...--.++++.|++.|.|++.
T Consensus 162 AV~~t-vy~Gs~~E-~~ml~~l~~i~~ea~~~GlPlv~ 197 (348)
T PRK09250 162 AVGAT-IYFGSEES-RRQIEEISEAFEEAHELGLATVL 197 (348)
T ss_pred EEEEE-EecCCHHH-HHHHHHHHHHHHHHHHhCCCEEE
Confidence 87663 11221111 12222234888999999999986
No 368
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=42.64 E-value=2.7e+02 Score=31.24 Aligned_cols=151 Identities=17% Similarity=0.163 Sum_probs=91.5
Q ss_pred CCCccCHHHHHHHH-HcCCCEEEe----------cCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhc--------
Q 008172 262 TLSKKDWDDIEFGI-AEGVDFIAM----------SFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQK-------- 322 (575)
Q Consensus 262 ~lsekD~~di~~al-~~gvd~I~~----------SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~n-------- 322 (575)
+++..|+..|..++ +.|++.|=+ +|++- ++-+.++.+-+...+-.+..++.--|.-|..+
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e-~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~ 100 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNE-DPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVES 100 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCC-CHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHH
Confidence 67778877666555 579988865 56542 23444444322211122333355445555533
Q ss_pred -HHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHccc
Q 008172 323 -FEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQYA 399 (575)
Q Consensus 323 -ldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~G~ 399 (575)
++.-++. .|.+-|. .+..++.. .+..++.++++|+-+-++- +....|+-+.+-+.+++. ++..|+
T Consensus 101 ~v~~A~~~Gvd~irif-------~~lnd~~n-~~~~v~~ak~~G~~v~~~i----~~t~~p~~~~~~~~~~a~~l~~~Ga 168 (448)
T PRK12331 101 FVQKSVENGIDIIRIF-------DALNDVRN-LETAVKATKKAGGHAQVAI----SYTTSPVHTIDYFVKLAKEMQEMGA 168 (448)
T ss_pred HHHHHHHCCCCEEEEE-------EecCcHHH-HHHHHHHHHHcCCeEEEEE----EeecCCCCCHHHHHHHHHHHHHcCC
Confidence 2333333 6766553 23334443 5568899999998764321 233346666666777665 667899
Q ss_pred ceEEeccCcCCCCCHHHHHHHHHHHHH
Q 008172 400 DALMLSGESAIGPFGQKAVSVLQMASS 426 (575)
Q Consensus 400 D~vmLs~ETa~G~yPveaV~~m~~I~~ 426 (575)
|.+.+. +|+=--.|.++-+.+..+-+
T Consensus 169 d~I~i~-Dt~G~l~P~~v~~lv~alk~ 194 (448)
T PRK12331 169 DSICIK-DMAGILTPYVAYELVKRIKE 194 (448)
T ss_pred CEEEEc-CCCCCCCHHHHHHHHHHHHH
Confidence 999998 88888889988887776643
No 369
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=42.49 E-value=1.1e+02 Score=30.61 Aligned_cols=67 Identities=18% Similarity=0.315 Sum_probs=45.0
Q ss_pred HHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHc-CCCEEEeh
Q 008172 293 VRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQL-NKPVIVAS 371 (575)
Q Consensus 293 v~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~-gKPvivaT 371 (575)
+..+++.+.+.+ ..+.+-+.-|.... +|++++++-.|.|+-+ .+.. .....+.+.|.++ ++|++.++
T Consensus 83 a~~a~~~l~~ln-p~v~v~~~~~~i~~-~~~~~~~~~~DvVI~a---------~D~~-~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 83 VEALKENLLEIN-PFVEIEAHNEKIDE-DNIEELFKDCDIVVEA---------FDNA-ETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred HHHHHHHHHHHC-CCCEEEEEeeecCH-HHHHHHHcCCCEEEEC---------CCCH-HHHHHHHHHHHHhCCCCEEEee
Confidence 345555566555 55666555554443 5778888888988876 2232 3455778999998 99999874
No 370
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=42.37 E-value=3.6e+02 Score=27.93 Aligned_cols=122 Identities=11% Similarity=0.098 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCC-HHHHHHHHHHHHHHHhhhhh
Q 008172 355 IIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPF-GQKAVSVLQMASSRMELWSR 433 (575)
Q Consensus 355 ~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~y-PveaV~~m~~I~~~aE~~~~ 433 (575)
-+...|+.+|.|+.+. .|..+...-+...-..|++.+..-+ .| -.++++...++.++-..|
T Consensus 72 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~v~~~~~-----~~~~~~~~~~a~~~~~~~~~~-- 133 (299)
T TIGR01136 72 ALAMVAAAKGYKLILT-----------MPETMSLERRKLLRAYGAELILTPA-----EEGMKGAIDKAEELAAETNKY-- 133 (299)
T ss_pred HHHHHHHHcCCcEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCC-----CCChHHHHHHHHHHHhhCCCe--
Confidence 4556889999999885 3555544555666689999877643 22 134444333332211011
Q ss_pred hhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcC--CcEEEEEcCChhHHH----HHhccCCCCcEEEEcCcH
Q 008172 434 EENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLG--VDAIFVYTKHGHMAS----LLSRNRPNPPIFAFTNDD 504 (575)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--AkaIVVfT~SG~TAr----~VSr~RP~~PIiAvT~~~ 504 (575)
+ ...+.. . +..+..-....+.|+.++++ .+.||+.+-+|.++- .+..++|...|+++.+..
T Consensus 134 -------~-~~~~~~-~-~~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~ 200 (299)
T TIGR01136 134 -------V-MLDQFE-N-PANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAE 200 (299)
T ss_pred -------E-ecCCCC-C-chhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 0 111111 1 11111113344567777775 789999999998775 444467999999998754
No 371
>PLN02565 cysteine synthase
Probab=42.09 E-value=3.5e+02 Score=28.73 Aligned_cols=122 Identities=11% Similarity=0.091 Sum_probs=72.7
Q ss_pred HHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhhhh
Q 008172 356 IIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSREE 435 (575)
Q Consensus 356 Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~ 435 (575)
+...|+.+|.|+.+. .|..+.-.-+...-..|++.++-..+ .| .-++++...++.++...++
T Consensus 82 lA~~a~~~G~~~~iv-----------vp~~~~~~k~~~i~~~GA~V~~~~~~--~~--~~~~~~~a~~l~~~~~~~~--- 143 (322)
T PLN02565 82 LAFMAAAKGYKLIIT-----------MPASMSLERRIILLAFGAELVLTDPA--KG--MKGAVQKAEEILAKTPNSY--- 143 (322)
T ss_pred HHHHHHHcCCeEEEE-----------eCCCCcHHHHHHHHHcCCEEEEeCCC--CC--cHHHHHHHHHHHHhCCCcE---
Confidence 456899999999984 46666666667777899998875332 12 2345444444432210111
Q ss_pred hhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcC--CcEEEEEcCChhHHH----HHhccCCCCcEEEEcCcH
Q 008172 436 NRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLG--VDAIFVYTKHGHMAS----LLSRNRPNPPIFAFTNDD 504 (575)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--AkaIVVfT~SG~TAr----~VSr~RP~~PIiAvT~~~ 504 (575)
..++... +.++.--...-+.++.++++ .++||+..=+|.+.. .+..++|.+.|+++.|..
T Consensus 144 -------~~~q~~n--~~n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~ 209 (322)
T PLN02565 144 -------ILQQFEN--PANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVE 209 (322)
T ss_pred -------eecccCC--HhHHHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 1112111 11111113334456666664 799999999998765 445567999999998854
No 372
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=41.95 E-value=61 Score=35.71 Aligned_cols=86 Identities=14% Similarity=0.138 Sum_probs=62.4
Q ss_pred cCHHHHHHHHHcCCCEEEec-------CcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCC
Q 008172 266 KDWDDIEFGIAEGVDFIAMS-------FVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARG 338 (575)
Q Consensus 266 kD~~di~~al~~gvd~I~~S-------fV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRG 338 (575)
.|.-.+.+..+.|+.+|... -|-+.+++.+.|+.+...| .-++=||+. .+.+-|+.+.+
T Consensus 11 ~d~v~l~~irQ~G~~giV~al~~~p~gevW~~~~i~~~k~~ie~~G----L~~~vvEs~----------pv~e~Ik~g~~ 76 (394)
T TIGR00695 11 NDPVSLEDVRQAGATGIVTALHHIPNGEVWEKEEIRKRKEYIESAG----LHWSVVESV----------PVHEAIKTGTG 76 (394)
T ss_pred CCcchHHHHhhcCCcceeecCCCCCCCCCCCHHHHHHHHHHHHHcC----CeEEEEeCC----------CccHHHHcCCC
Confidence 56667777777899999844 3678899999999998887 345557773 22344555433
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHcCCCEEEeh
Q 008172 339 DLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVAS 371 (575)
Q Consensus 339 DLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaT 371 (575)
+ .++-.+..|+.|+..-++|.||++--
T Consensus 77 ~------rd~~Ienyk~~irNla~~GI~vicYN 103 (394)
T TIGR00695 77 N------YGRWIENYKQTLRNLAQCGIKTVCYN 103 (394)
T ss_pred c------HHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 2 35566677899999999999999853
No 373
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.88 E-value=1.1e+02 Score=32.41 Aligned_cols=65 Identities=12% Similarity=0.184 Sum_probs=49.8
Q ss_pred CHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHH--hcHHHHHhc-CCEEEEeC
Q 008172 267 DWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESL--QKFEEIVEA-SDGIMVAR 337 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av--~nldeI~~~-sDgImIaR 337 (575)
..+....|++.|+|.|.+=... +++++++.+.++..+ .++ +||---|+ +|+.+.++. +|+|-++.
T Consensus 208 tl~ea~eal~~gaDiI~LDnm~-~e~vk~av~~~~~~~-~~v----~ieaSGGI~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 208 SLEQLDEVLAEGAELVLLDNFP-VWQTQEAVQRRDARA-PTV----LLESSGGLTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred CHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHhccC-CCE----EEEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 4667788899999999999875 899999888776554 343 45554444 588888888 89999863
No 374
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=41.68 E-value=3.9e+02 Score=27.66 Aligned_cols=94 Identities=13% Similarity=0.022 Sum_probs=53.7
Q ss_pred HHHHHhc--CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHH--cC-CCEEEehhhHHhhhcCCCCChhhHhhHH-HHHH
Q 008172 323 FEEIVEA--SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQ--LN-KPVIVASQLLESMVEYPTPTRAEVADVS-EAVR 396 (575)
Q Consensus 323 ldeI~~~--sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~--~g-KPvivaTq~LeSM~~~p~PtrAEv~Dv~-nav~ 396 (575)
++..++. +||+++. | -.-|.+.-. ..-++++++.+.+ .| .|+|+-+ ...+-.|+.+.+ .|..
T Consensus 27 i~~l~~~~Gv~gi~~~-G-stGE~~~Lt-~~Er~~~~~~~~~~~~~~~~viagv---------~~~~~~~ai~~a~~a~~ 94 (288)
T cd00954 27 VDYLIEKQGVDGLYVN-G-STGEGFLLS-VEERKQIAEIVAEAAKGKVTLIAHV---------GSLNLKESQELAKHAEE 94 (288)
T ss_pred HHHHHhcCCCCEEEEC-c-CCcCcccCC-HHHHHHHHHHHHHHhCCCCeEEecc---------CCCCHHHHHHHHHHHHH
Confidence 4445555 7999985 3 333333322 2223444444443 23 5777632 234445655555 4789
Q ss_pred cccceEEeccCcCCCCCHHHHHHHHHHHHHHH
Q 008172 397 QYADALMLSGESAIGPFGQKAVSVLQMASSRM 428 (575)
Q Consensus 397 ~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~a 428 (575)
.|+|++|+..--....-+-+.++..+.|++.+
T Consensus 95 ~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 95 LGYDAISAITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred cCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999998755443333467777777777655
No 375
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=41.64 E-value=1e+02 Score=26.78 Aligned_cols=62 Identities=19% Similarity=0.199 Sum_probs=46.3
Q ss_pred hHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEE
Q 008172 292 SVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIV 369 (575)
Q Consensus 292 dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviv 369 (575)
=+..+++++.++|. +. .|+. -++.++++.+...|.|+++ +.+...++++-+.+...|+||.+
T Consensus 19 l~~k~~~~~~~~gi-~~----~v~a-~~~~~~~~~~~~~Dvill~----------pqi~~~~~~i~~~~~~~~ipv~~ 80 (95)
T TIGR00853 19 LVNKMNKAAEEYGV-PV----KIAA-GSYGAAGEKLDDADVVLLA----------PQVAYMLPDLKKETDKKGIPVEV 80 (95)
T ss_pred HHHHHHHHHHHCCC-cE----EEEE-ecHHHHHhhcCCCCEEEEC----------chHHHHHHHHHHHhhhcCCCEEE
Confidence 45677888877762 22 3332 3555676767778999997 77888899999999999999997
No 376
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=41.62 E-value=2.8e+02 Score=30.11 Aligned_cols=129 Identities=12% Similarity=0.072 Sum_probs=73.2
Q ss_pred HHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc----CCEEEEeCCCCCCCCCC
Q 008172 271 IEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA----SDGIMVARGDLGVDIPL 346 (575)
Q Consensus 271 i~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~----sDgImIaRGDLg~e~~~ 346 (575)
+..|+..|+|+|=++.= .-.+.++|..++ .+..|=+-. .|++++.+. +|.|.+|+---+..=|.
T Consensus 210 vdlAl~~~aDGVHLgq~--dl~~~~aR~llg----~~~iIG~S~------Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~ 277 (347)
T PRK02615 210 VDIALAVDADGVHLGQE--DLPLAVARQLLG----PEKIIGRST------TNPEEMAKAIAEGADYIGVGPVFPTPTKPG 277 (347)
T ss_pred HHHHHHcCCCEEEeChh--hcCHHHHHHhcC----CCCEEEEec------CCHHHHHHHHHcCCCEEEECCCcCCCCCCC
Confidence 45688899999988742 112455666553 222233323 334444443 89999986433221111
Q ss_pred CChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHH
Q 008172 347 EQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMAS 425 (575)
Q Consensus 347 e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~ 425 (575)
.. +.--+.+-..+.....||+.-..+ +.. ++......|+|+|.+.+.-.....|.++++.+....
T Consensus 278 ~~-~~Gle~l~~~~~~~~iPv~AiGGI----------~~~---ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~~l 342 (347)
T PRK02615 278 KA-PAGLEYLKYAAKEAPIPWFAIGGI----------DKS---NIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLKQL 342 (347)
T ss_pred CC-CCCHHHHHHHHHhCCCCEEEECCC----------CHH---HHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHHHH
Confidence 11 111233333445667898853221 222 344556789999999887776778988888766553
No 377
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=41.59 E-value=2.7e+02 Score=26.92 Aligned_cols=105 Identities=14% Similarity=0.109 Sum_probs=60.3
Q ss_pred CHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc----CCEEEEeCCCCCC
Q 008172 267 DWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA----SDGIMVARGDLGV 342 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~----sDgImIaRGDLg~ 342 (575)
+.+.++.+++.|+|||..|-- -.++.+.++ ..+ ..++. |+.+++|+.+. +|.|.+-+.
T Consensus 65 ~~~~~~~a~~~Ga~~i~~p~~--~~~~~~~~~---~~~---~~~i~------gv~t~~e~~~A~~~Gad~i~~~p~---- 126 (190)
T cd00452 65 TPEQADAAIAAGAQFIVSPGL--DPEVVKAAN---RAG---IPLLP------GVATPTEIMQALELGADIVKLFPA---- 126 (190)
T ss_pred CHHHHHHHHHcCCCEEEcCCC--CHHHHHHHH---HcC---CcEEC------CcCCHHHHHHHHHCCCCEEEEcCC----
Confidence 456778899999999987742 234433333 222 45665 44456665554 799998542
Q ss_pred CCCCCChHHHHHHHHHHHHHc-CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCc
Q 008172 343 DIPLEQIPTVQEIIIHVCRQL-NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGES 408 (575)
Q Consensus 343 e~~~e~v~~~Qk~Ii~~c~~~-gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ET 408 (575)
+.. -+..-+.+ +... +.|++....+ | ..++..+...|+|++..++-.
T Consensus 127 --~~~-g~~~~~~l---~~~~~~~p~~a~GGI----------~---~~n~~~~~~~G~~~v~v~s~i 174 (190)
T cd00452 127 --EAV-GPAYIKAL---KGPFPQVRFMPTGGV----------S---LDNAAEWLAAGVVAVGGGSLL 174 (190)
T ss_pred --ccc-CHHHHHHH---HhhCCCCeEEEeCCC----------C---HHHHHHHHHCCCEEEEEchhc
Confidence 111 22222322 2223 4677653221 2 245577778899999988543
No 378
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=41.53 E-value=3.2e+02 Score=29.60 Aligned_cols=133 Identities=17% Similarity=0.114 Sum_probs=66.8
Q ss_pred CCCCccCHHHH--------HHHHHcCCCEEEecCc-------------CCh------------hhHHHHHHHHhccCCCC
Q 008172 261 PTLSKKDWDDI--------EFGIAEGVDFIAMSFV-------------CDA------------DSVRHLKKYVSGKSSRS 307 (575)
Q Consensus 261 p~lsekD~~di--------~~al~~gvd~I~~SfV-------------~sa------------~dv~~ir~~l~~~~~~~ 307 (575)
..||..|++.+ +.|.+.|+|+|=+..- +.. .-+.++.+.+++.-+.+
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~ 217 (370)
T cd02929 138 REMDKDDIKRVRRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDD 217 (370)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCC
Confidence 35777777665 4778899999965332 222 12223333333331245
Q ss_pred ceEEeeecCH------------HHHhcHHHHHhcCCEEEEeCCCCCCCCCC-CCh-HHHHHHHHHHHH-HcCCCEEEehh
Q 008172 308 IKVLAKIENL------------ESLQKFEEIVEASDGIMVARGDLGVDIPL-EQI-PTVQEIIIHVCR-QLNKPVIVASQ 372 (575)
Q Consensus 308 i~IIaKIEt~------------~av~nldeI~~~sDgImIaRGDLg~e~~~-e~v-~~~Qk~Ii~~c~-~~gKPvivaTq 372 (575)
..|..||--. ++++-++.+-+..|.+-+..|-....... ... ...+...++..+ ..+.||+....
T Consensus 218 ~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~ 297 (370)
T cd02929 218 CAVATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGR 297 (370)
T ss_pred ceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHhhCCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCC
Confidence 5566666211 12222233333368888877744321110 000 111223333333 35889998643
Q ss_pred hHHhhhcCCCCChhhHhhHHHHHHcc-cceEEec
Q 008172 373 LLESMVEYPTPTRAEVADVSEAVRQY-ADALMLS 405 (575)
Q Consensus 373 ~LeSM~~~p~PtrAEv~Dv~nav~~G-~D~vmLs 405 (575)
+ -+.+ +...++.+| +|.|++.
T Consensus 298 i---------~~~~---~~~~~l~~g~~D~V~~g 319 (370)
T cd02929 298 F---------TSPD---KMVEVVKSGILDLIGAA 319 (370)
T ss_pred C---------CCHH---HHHHHHHcCCCCeeeec
Confidence 2 2222 234456666 9999996
No 379
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=41.41 E-value=1.6e+02 Score=29.80 Aligned_cols=129 Identities=16% Similarity=0.240 Sum_probs=84.4
Q ss_pred CCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCC
Q 008172 260 LPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGD 339 (575)
Q Consensus 260 lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGD 339 (575)
-|-|+--+.+.|.-+-+.|+.+.+++-+ -+|+...+|+.++..+..-+.+++-=-+. +.++-|.+++|+.+--=.-
T Consensus 105 NPIl~yG~e~~iq~ak~aGanGfiivDl-PpEEa~~~Rne~~k~gislvpLvaPsTtd---eRmell~~~adsFiYvVSr 180 (268)
T KOG4175|consen 105 NPILRYGVENYIQVAKNAGANGFIIVDL-PPEEAETLRNEARKHGISLVPLVAPSTTD---ERMELLVEAADSFIYVVSR 180 (268)
T ss_pred cHHHhhhHHHHHHHHHhcCCCceEeccC-ChHHHHHHHHHHHhcCceEEEeeCCCChH---HHHHHHHHhhcceEEEEEe
Confidence 3566777888889999999999998887 57889999999987663223344433333 4566777778886532222
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHc--CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 340 LGVDIPLEQIPTVQEIIIHVCRQL--NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 340 Lg~e~~~e~v~~~Qk~Ii~~c~~~--gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
.|+.=..+.+...-..++++.|++ .+|+-+- -..-|+.....|+.. +|++...
T Consensus 181 mG~TG~~~svn~~l~~L~qrvrk~t~dtPlAVG---------FGvst~EHf~qVgsv----aDGVvvG 235 (268)
T KOG4175|consen 181 MGVTGTRESVNEKLQSLLQRVRKATGDTPLAVG---------FGVSTPEHFKQVGSV----ADGVVVG 235 (268)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCCCceeEe---------eccCCHHHHHhhhhh----ccceEec
Confidence 222222355666666777777776 4776653 246677777777664 6776653
No 380
>PRK09224 threonine dehydratase; Reviewed
Probab=41.38 E-value=3.7e+02 Score=30.53 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=69.9
Q ss_pred HHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhh
Q 008172 354 EIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSR 433 (575)
Q Consensus 354 k~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 433 (575)
.-+...|++.|.|+.+-- |..+.-.-+...-..|++.++.. +.| -++.+...++.++ +.+.
T Consensus 81 ~avA~aa~~lGi~~~Ivm-----------P~~tp~~K~~~~r~~GA~Vi~~g-----~~~-~~a~~~a~~l~~~-~g~~- 141 (504)
T PRK09224 81 QGVALSAARLGIKAVIVM-----------PVTTPDIKVDAVRAFGGEVVLHG-----DSF-DEAYAHAIELAEE-EGLT- 141 (504)
T ss_pred HHHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHhCCCEEEEEC-----CCH-HHHHHHHHHHHHh-cCCE-
Confidence 356678999999998742 32222334445567999876653 233 4665554444322 1110
Q ss_pred hhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcC--CcEEEEEcCChhHHHH----HhccCCCCcEEEEcCcH
Q 008172 434 EENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLG--VDAIFVYTKHGHMASL----LSRNRPNPPIFAFTNDD 504 (575)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--AkaIVVfT~SG~TAr~----VSr~RP~~PIiAvT~~~ 504 (575)
..++... + .....-..-+.++..+++ .+.||+..-+|.++-- +..++|...||+|-+..
T Consensus 142 ---------~v~~f~~--~-~~i~G~gTi~~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~ 206 (504)
T PRK09224 142 ---------FIHPFDD--P-DVIAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPED 206 (504)
T ss_pred ---------EeCCCCC--c-HHHHhHHHHHHHHHHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 1111111 1 112222333567777774 6899999999976554 45578999999998743
No 381
>PRK10425 DNase TatD; Provisional
Probab=41.37 E-value=3.6e+02 Score=27.71 Aligned_cols=107 Identities=20% Similarity=0.244 Sum_probs=63.6
Q ss_pred cCCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeee------c-CHHHHhcHHHHHhcCC
Q 008172 259 GLPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKI------E-NLESLQKFEEIVEASD 331 (575)
Q Consensus 259 ~lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKI------E-t~~av~nldeI~~~sD 331 (575)
+.+.+.+.-.+.++.|.+.|+..++.+-+ +.++..+++++..... .+....=| | +.+.++.++++++.-.
T Consensus 9 ~~~~~~~d~~~vl~~a~~~gv~~~i~~~~-~~~~~~~~~~l~~~~~--~v~~~~GiHP~~~~~~~~~~~~~l~~~~~~~~ 85 (258)
T PRK10425 9 TSSQFAKDRDDVVARAFAAGVNGMLITGT-NLRESQQAQKLARQYP--SCWSTAGVHPHDSSQWQAATEEAIIELAAQPE 85 (258)
T ss_pred CChhhhccHHHHHHHHHHCCCCEEEEeCC-CHHHHHHHHHHHHhCC--CEEEEEEeCcCccccCCHHHHHHHHHhccCCC
Confidence 33444322235567788889888877765 4777777777665331 22111111 2 2444556666664333
Q ss_pred EEEEeCCCCCCCCCC-CChHHHHH----HHHHHHHHcCCCEEEe
Q 008172 332 GIMVARGDLGVDIPL-EQIPTVQE----IIIHVCRQLNKPVIVA 370 (575)
Q Consensus 332 gImIaRGDLg~e~~~-e~v~~~Qk----~Ii~~c~~~gKPviva 370 (575)
++|=|+.|+++.. ..-...|+ +.++.|.++++|+++=
T Consensus 86 --~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH 127 (258)
T PRK10425 86 --VVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMH 127 (258)
T ss_pred --EEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 4455788887753 23345664 6778899999999973
No 382
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=41.36 E-value=67 Score=34.68 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=46.0
Q ss_pred CHHHHHHHHHcCCCEEEecCc---------CChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc----CCEE
Q 008172 267 DWDDIEFGIAEGVDFIAMSFV---------CDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA----SDGI 333 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~SfV---------~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~----sDgI 333 (575)
..++.+.+.+.|+|+|.+|.- .+.+-+.++++.+...+ +++.||+- .||.|=.+|++. +|++
T Consensus 223 ~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~-~~~~vi~~----GGIr~G~Dv~kalaLGA~aV 297 (344)
T cd02922 223 TVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVF-DKIEVYVD----GGVRRGTDVLKALCLGAKAV 297 (344)
T ss_pred CHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhC-CCceEEEe----CCCCCHHHHHHHHHcCCCEE
Confidence 478888999999999999873 23334555555543333 34555542 466666666665 8999
Q ss_pred EEeCCCC
Q 008172 334 MVARGDL 340 (575)
Q Consensus 334 mIaRGDL 340 (575)
+|||.=|
T Consensus 298 ~iG~~~l 304 (344)
T cd02922 298 GLGRPFL 304 (344)
T ss_pred EECHHHH
Confidence 9987654
No 383
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=41.35 E-value=2e+02 Score=29.35 Aligned_cols=109 Identities=16% Similarity=0.206 Sum_probs=61.4
Q ss_pred HHHHHHcCCCEEEecCcC----------ChhhHHHHHHHHhccCCCCceEEeeecCH--------HHHhcHHHHHhc-CC
Q 008172 271 IEFGIAEGVDFIAMSFVC----------DADSVRHLKKYVSGKSSRSIKVLAKIENL--------ESLQKFEEIVEA-SD 331 (575)
Q Consensus 271 i~~al~~gvd~I~~SfV~----------sa~dv~~ir~~l~~~~~~~i~IIaKIEt~--------~av~nldeI~~~-sD 331 (575)
++...+.|+.+|.+--=+ -.+-+.++|.....+...+..|+|..+.. ++++....-.+. +|
T Consensus 91 v~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD 170 (238)
T PF13714_consen 91 VRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGAD 170 (238)
T ss_dssp HHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCCC
Confidence 444556677777664331 23345556666655544459999999993 344444444444 89
Q ss_pred EEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEe
Q 008172 332 GIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALML 404 (575)
Q Consensus 332 gImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmL 404 (575)
+||+- ++.+... |-+.|++.+.|+.+.- ....+|-.|+. ..|+.-+..
T Consensus 171 ~ifi~--------~~~~~~~----i~~~~~~~~~Pl~v~~-------~~~~~~~~eL~------~lGv~~v~~ 218 (238)
T PF13714_consen 171 MIFIP--------GLQSEEE----IERIVKAVDGPLNVNP-------GPGTLSAEELA------ELGVKRVSY 218 (238)
T ss_dssp EEEET--------TSSSHHH----HHHHHHHHSSEEEEET-------TSSSS-HHHHH------HTTESEEEE
T ss_pred EEEeC--------CCCCHHH----HHHHHHhcCCCEEEEc-------CCCCCCHHHHH------HCCCcEEEE
Confidence 99994 3333332 4455666689977631 12235555444 568777655
No 384
>PLN02970 serine racemase
Probab=41.29 E-value=3.3e+02 Score=28.85 Aligned_cols=119 Identities=13% Similarity=0.114 Sum_probs=70.2
Q ss_pred HHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhhh
Q 008172 355 IIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSRE 434 (575)
Q Consensus 355 ~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 434 (575)
-+...|+..|.|+.+.. |..+.-..+.+.-..|++.+...+ . ..++.++.+++.++ ..++
T Consensus 89 alA~~a~~~G~~~~ivv-----------p~~~~~~k~~~~~~~GA~Vi~~~~-----~-~~~~~~~a~~la~~-~g~~-- 148 (328)
T PLN02970 89 ALALAAKLRGIPAYIVV-----------PKNAPACKVDAVIRYGGIITWCEP-----T-VESREAVAARVQQE-TGAV-- 148 (328)
T ss_pred HHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHhcCCEEEEeCC-----C-HHHHHHHHHHHHHh-cCCE--
Confidence 45678999999999852 333323334556678999877542 2 23444444444322 1111
Q ss_pred hhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhc-CCcEEEEEcCChhHHHHHhcc----CCCCcEEEEcCcH
Q 008172 435 ENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNL-GVDAIFVYTKHGHMASLLSRN----RPNPPIFAFTNDD 504 (575)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~-~AkaIVVfT~SG~TAr~VSr~----RP~~PIiAvT~~~ 504 (575)
...+... + ...+....-+.|+..++ ..+.||+..-+|.++.-++++ .|...|+++-|..
T Consensus 149 --------~~~~~~n--~-~~~~g~~t~g~Ei~~ql~~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~ 212 (328)
T PLN02970 149 --------LIHPYND--G-RVISGQGTIALEFLEQVPELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKG 212 (328)
T ss_pred --------EeCCCCC--c-chhhehHHHHHHHHHhccCCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECC
Confidence 1112111 1 11222233456666666 368999999999987766664 8999999997743
No 385
>PRK10717 cysteine synthase A; Provisional
Probab=41.19 E-value=3e+02 Score=29.08 Aligned_cols=130 Identities=9% Similarity=0.011 Sum_probs=69.1
Q ss_pred HHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhhh
Q 008172 355 IIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSRE 434 (575)
Q Consensus 355 ~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 434 (575)
-+...|+..|.|+.+.. |..+.-.-+...-..|++.+...+. . ...|-..++...++.++.+.....
T Consensus 78 alA~~a~~~G~~~~vv~-----------p~~~~~~k~~~~~~~GA~V~~~~~~-~-~~~~~~~~~~a~~~a~~~~~~~~~ 144 (330)
T PRK10717 78 GLALVAAARGYKTVIVM-----------PETQSQEKKDLLRALGAELVLVPAA-P-YANPNNYVKGAGRLAEELVASEPN 144 (330)
T ss_pred HHHHHHHHcCCcEEEEe-----------CCCCCHHHHHHHHHcCCEEEEeCCc-c-cccccchHHHHHHHHHHHHhhCCC
Confidence 45568999999999852 3333333445566899998777532 1 011112233323333222110000
Q ss_pred hhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcC--CcEEEEEcCChhHHHHHh----ccCCCCcEEEEcCcH
Q 008172 435 ENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLG--VDAIFVYTKHGHMASLLS----RNRPNPPIFAFTNDD 504 (575)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--AkaIVVfT~SG~TAr~VS----r~RP~~PIiAvT~~~ 504 (575)
..+ ...+.. .+.....-...-+.|+.++++ .+.||+..-+|.++.-++ .++|.+.|+++-|..
T Consensus 145 ----~~~-~~~~~~--~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~ 213 (330)
T PRK10717 145 ----GAI-WANQFD--NPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTG 213 (330)
T ss_pred ----CeE-ecCCCC--ChhhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 001 111111 111111112334667777775 699999999999766444 467999999998754
No 386
>PLN02741 riboflavin synthase
Probab=41.01 E-value=59 Score=32.31 Aligned_cols=57 Identities=19% Similarity=0.429 Sum_probs=42.8
Q ss_pred cEEEecccccccccCCCCEEEEeCCeeEEEEEEEECCeEEEEEec-------CeEecCCccccccc
Q 008172 191 FTVKANYAGFSEGIEVGDELVIDGGMASFEVIEKVGNDLRCKCTD-------PGVFLPRAKLSFRR 249 (575)
Q Consensus 191 ~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~i~~~V~~-------gG~l~s~K~vn~~r 249 (575)
..+.+..+.+.+.+++||.|-+|. +.|.|.++.++.+.+-+.. =|.+.....||+.|
T Consensus 23 ~~l~i~~~~~~~~l~~G~SIAvnG--vCLTV~~~~~~~f~vdvipETl~~T~L~~l~~G~~VNLEr 86 (194)
T PLN02741 23 FDLKIEASTVLDGVKLGDSIAVNG--TCLTVTEFDGDEFTVGLAPETLRKTSLGELKTGSLVNLER 86 (194)
T ss_pred EEEEEEcchhhcccccCCEEEECc--EEEEEEEECCCEEEEEEEHHHhhhCccccCCCCCEEeecc
Confidence 345566566788999999999987 8999999998887776643 26666666677654
No 387
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=40.93 E-value=3.6e+02 Score=26.45 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=73.7
Q ss_pred CccCHHHHH-HHHHcCCCEEEec-----CcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHh---cHHHHHhc-CCEE
Q 008172 264 SKKDWDDIE-FGIAEGVDFIAMS-----FVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQ---KFEEIVEA-SDGI 333 (575)
Q Consensus 264 sekD~~di~-~al~~gvd~I~~S-----fV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~---nldeI~~~-sDgI 333 (575)
+..|+.++. ...+.|+++|.+. |=.+.++++.+++.. ++.|+.|= .+. .+++..+. +|++
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v------~iPi~~~~----~i~~~~~v~~~~~~Gad~v 98 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV------SLPVLRKD----FIIDPYQIYEARAAGADAV 98 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc------CCCEEECC----eecCHHHHHHHHHcCCCEE
Confidence 445665554 4567899999663 335778888888764 25566541 222 24555555 8999
Q ss_pred EEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCc
Q 008172 334 MVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGES 408 (575)
Q Consensus 334 mIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ET 408 (575)
.++=-||. +..-+++++.+...|.-+++.+. +-.| +..+...|+|.+..++.+
T Consensus 99 ~l~~~~~~--------~~~~~~~~~~~~~~g~~~~v~v~-----------~~~e---~~~~~~~g~~~i~~t~~~ 151 (217)
T cd00331 99 LLIVAALD--------DEQLKELYELARELGMEVLVEVH-----------DEEE---LERALALGAKIIGINNRD 151 (217)
T ss_pred EEeeccCC--------HHHHHHHHHHHHHcCCeEEEEEC-----------CHHH---HHHHHHcCCCEEEEeCCC
Confidence 98644432 14557888888999998876542 3333 566777899999988543
No 388
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=40.92 E-value=75 Score=32.16 Aligned_cols=164 Identities=14% Similarity=0.123 Sum_probs=91.8
Q ss_pred CCHHHHHHH----HHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhcCCc-eEEE-EeCCCCeEEEEecCCCCceEEecC
Q 008172 102 CSMEDLEKL----AMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEKLFC-ISVM-IDTEGSQIHVVDHGEPNSVKVEED 175 (575)
Q Consensus 102 ~~~e~l~~l----i~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~~~~-i~Il-~Dl~GpkIRtG~~~~~~~i~l~~G 175 (575)
.+++.+-.| ...|.-..|+| -+++||...+..+.| ++|. =|+++..+|+..+-..-.-..+.|
T Consensus 30 ~~~~iv~~mA~Aa~~gGAvgiR~~-----------gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~G 98 (229)
T COG3010 30 DSPEIVAAMALAAEQGGAVGIRIE-----------GVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAG 98 (229)
T ss_pred cchhHHHHHHHHHHhCCcceEeec-----------chhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCC
Confidence 344544444 56799999998 356777777777888 4665 689998888865421100112456
Q ss_pred CEEE-EEeeccCCCCCcEEEecccccccccCCCCEEEEeCCeeEEEEEEEECCeEEEEEecCeEecCCcccccccCcccc
Q 008172 176 SIWL-FTAIKFEGSRPFTVKANYAGFSEGIEVGDELVIDGGMASFEVIEKVGNDLRCKCTDPGVFLPRAKLSFRRNGILV 254 (575)
Q Consensus 176 ~~v~-lt~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~i~~~V~~gG~l~s~K~vn~~r~g~~~ 254 (575)
-.+. |....- .++ .. +.++|++..+-=..+++.|= +.- ..|...-+.|+-| -+-.+.
T Consensus 99 a~IIA~DaT~R--~RP--~~-~~~~~i~~~k~~~~l~MAD~-------St~---------ee~l~a~~~G~D~-IGTTLs 156 (229)
T COG3010 99 ADIIAFDATDR--PRP--DG-DLEELIARIKYPGQLAMADC-------STF---------EEGLNAHKLGFDI-IGTTLS 156 (229)
T ss_pred CcEEEeecccC--CCC--cc-hHHHHHHHhhcCCcEEEecc-------CCH---------HHHHHHHHcCCcE-Eecccc
Confidence 5544 421111 011 11 44556665554445555551 111 1122222222221 000011
Q ss_pred cccccCCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHH
Q 008172 255 ERNHGLPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKK 298 (575)
Q Consensus 255 ~~~~~lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~ 298 (575)
|..-.-+..++-|...++..++.|+..|+=--.+|+++++++.+
T Consensus 157 GYT~~~~~~~~pDf~lvk~l~~~~~~vIAEGr~~tP~~Ak~a~~ 200 (229)
T COG3010 157 GYTGYTEKPTEPDFQLVKQLSDAGCRVIAEGRYNTPEQAKKAIE 200 (229)
T ss_pred cccCCCCCCCCCcHHHHHHHHhCCCeEEeeCCCCCHHHHHHHHH
Confidence 21111335678899999999999999999999999999888765
No 389
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=40.89 E-value=88 Score=30.95 Aligned_cols=66 Identities=17% Similarity=0.257 Sum_probs=38.7
Q ss_pred CHHHHHHHHHcCCCEEEecC--------cCChhhHHHHHHHHhccCCCCceEEe--eecCHHHHhcHHHHHhc-CCEEEE
Q 008172 267 DWDDIEFGIAEGVDFIAMSF--------VCDADSVRHLKKYVSGKSSRSIKVLA--KIENLESLQKFEEIVEA-SDGIMV 335 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~Sf--------V~sa~dv~~ir~~l~~~~~~~i~IIa--KIEt~~av~nldeI~~~-sDgImI 335 (575)
..++++.+.+.|+|+|.++. .....+...++++.+..+ +.+++ -|-++ +++.++++. +||+++
T Consensus 128 t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~---iPvia~GGI~t~---~~~~~~l~~GadgV~i 201 (221)
T PRK01130 128 TLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG---CPVIAEGRINTP---EQAKKALELGAHAVVV 201 (221)
T ss_pred CHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC---CCEEEECCCCCH---HHHHHHHHCCCCEEEE
Confidence 34566789999999997631 122233444444333222 33443 34333 566677777 899999
Q ss_pred eCC
Q 008172 336 ARG 338 (575)
Q Consensus 336 aRG 338 (575)
|+.
T Consensus 202 Gsa 204 (221)
T PRK01130 202 GGA 204 (221)
T ss_pred chH
Confidence 965
No 390
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=40.80 E-value=4.3e+02 Score=27.75 Aligned_cols=116 Identities=15% Similarity=0.180 Sum_probs=73.2
Q ss_pred CceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhH---HhhhcCCC
Q 008172 307 SIKVLAKIENLESLQKFEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLL---ESMVEYPT 382 (575)
Q Consensus 307 ~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~L---eSM~~~p~ 382 (575)
.+.|...+.+-.-.+.+.+-++. .+-||+... .+|+++=-..-+++++.|++.|.+|=.=---+ |.-...-.
T Consensus 69 ~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD~S----~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~ 144 (276)
T cd00947 69 SVPVALHLDHGSSFELIKRAIRAGFSSVMIDGS----HLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDE 144 (276)
T ss_pred CCCEEEECCCCCCHHHHHHHHHhCCCEEEeCCC----CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccccc
Confidence 57899999887655555555555 799999844 45888878888999999999998873200000 00000000
Q ss_pred CChhhHhhHHHHHH-cccceEEeccCcCCCCCHH----HHHHHHHHHHH
Q 008172 383 PTRAEVADVSEAVR-QYADALMLSGESAIGPFGQ----KAVSVLQMASS 426 (575)
Q Consensus 383 PtrAEv~Dv~nav~-~G~D~vmLs~ETa~G~yPv----eaV~~m~~I~~ 426 (575)
-......++..++. -|+|++-.|--|+-|.||- --.+.+.+|.+
T Consensus 145 ~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~ 193 (276)
T cd00947 145 GLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAE 193 (276)
T ss_pred ccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHH
Confidence 00111234455565 4999999999999999964 33344444443
No 391
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=40.65 E-value=2.1e+02 Score=31.44 Aligned_cols=87 Identities=15% Similarity=0.159 Sum_probs=55.4
Q ss_pred chhhHHHHHHHHHHHhcCCcEEEEEcCChhHHHHHhccC--CCCcEEEEcCcHHHH--HHhcccCCcEEEEecCCCCHHH
Q 008172 454 RIAEQICNCAVDMANNLGVDAIFVYTKHGHMASLLSRNR--PNPPIFAFTNDDSTR--MALNLQWGVIPVLVNLSDDMET 529 (575)
Q Consensus 454 ~~~~~ia~~av~~a~~~~AkaIVVfT~SG~TAr~VSr~R--P~~PIiAvT~~~~~a--R~L~L~~GV~Pvl~~~~~d~d~ 529 (575)
+..+.-+..++..+.+.+++.|++. .||++++-+|.|- -..|.+.++|..... ......+|+.-+.++. +.++
T Consensus 99 SFKdRga~~~i~~a~~~g~~~Vv~a-SsGN~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~ 175 (398)
T TIGR03844 99 SFKELEALPTMQRLKERGGKTLVVA-SAGNTGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DYTD 175 (398)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CHHH
Confidence 4556677777777877787765555 5899998887763 346777777754221 1123577877666643 4566
Q ss_pred HHHHHHHHHHHcCC
Q 008172 530 NIAKTIDLIKMKGM 543 (575)
Q Consensus 530 ~i~~al~~~~~~g~ 543 (575)
..+.+.+.+.+.|+
T Consensus 176 a~~~a~~~a~~~g~ 189 (398)
T TIGR03844 176 AIALADRIATLPGF 189 (398)
T ss_pred HHHHHHHHHHhCCc
Confidence 66666666666554
No 392
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=40.31 E-value=3.1e+02 Score=29.01 Aligned_cols=98 Identities=16% Similarity=0.290 Sum_probs=56.0
Q ss_pred cCChhhHHHHHHHHhccCCCCceEEeeecCH------HHHhcHHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHH
Q 008172 287 VCDADSVRHLKKYVSGKSSRSIKVLAKIENL------ESLQKFEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHV 359 (575)
Q Consensus 287 V~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~------~av~nldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~ 359 (575)
+...+-+..++.....+...+..|+|..|.. ++++....-.+. +|+||+- ++.. .. .|-+.
T Consensus 130 v~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~--------~~~~-~~---~i~~~ 197 (292)
T PRK11320 130 VSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPE--------AMTE-LE---MYRRF 197 (292)
T ss_pred cCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEec--------CCCC-HH---HHHHH
Confidence 3444556667766665444678999999985 455555555555 8999994 1222 22 23334
Q ss_pred HHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 360 CRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 360 c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
|.+..+|+.+ +|++- -.+|.++.+|+ -..|+..+...
T Consensus 198 ~~~~~~Pl~~--n~~~~-~~~p~~s~~~L------~~lGv~~v~~~ 234 (292)
T PRK11320 198 ADAVKVPILA--NITEF-GATPLFTTEEL------ASAGVAMVLYP 234 (292)
T ss_pred HHhcCCCEEE--EeccC-CCCCCCCHHHH------HHcCCcEEEEC
Confidence 4455789854 23311 12244454443 35788887664
No 393
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=40.24 E-value=3.9e+02 Score=28.34 Aligned_cols=130 Identities=13% Similarity=0.164 Sum_probs=76.2
Q ss_pred HHHHHcCCCEEEecCcCChhhHHHH---HHHHhccCCCCceEEeeec--CHHHHhcHHHHHhc--CCEEEEeCCCCCCCC
Q 008172 272 EFGIAEGVDFIAMSFVCDADSVRHL---KKYVSGKSSRSIKVLAKIE--NLESLQKFEEIVEA--SDGIMVARGDLGVDI 344 (575)
Q Consensus 272 ~~al~~gvd~I~~SfV~sa~dv~~i---r~~l~~~~~~~i~IIaKIE--t~~av~nldeI~~~--sDgImIaRGDLg~e~ 344 (575)
....+.|+++....||.....+..- +..+.... ....++.||- +++.+...-+++.. .|+| ||.+.+
T Consensus 27 ~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~-~~~~~~vQl~g~~~~~~~~aa~~~~~~g~d~I-----dlN~gC 100 (321)
T PRK10415 27 TLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID-EPGIRTVQIAGSDPKEMADAARINVESGAQII-----DINMGC 100 (321)
T ss_pred HHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCc-cCCCEEEEEeCCCHHHHHHHHHHHHHCCCCEE-----EEeCCC
Confidence 4466899999999999885443211 11121111 2345678884 34444333333332 4555 666778
Q ss_pred CCCC------------hHHHHHHHHHHHHHc-CCCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHcccceEEeccCcCC
Q 008172 345 PLEQ------------IPTVQEIIIHVCRQL-NKPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQYADALMLSGESAI 410 (575)
Q Consensus 345 ~~e~------------v~~~Qk~Ii~~c~~~-gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~G~D~vmLs~ETa~ 410 (575)
|.++ =|..-++|+++.+++ ++|+.+=+. ..-.++..+..+++. +...|+|++.+.+.|..
T Consensus 101 P~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR------~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~ 174 (321)
T PRK10415 101 PAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIR------TGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRA 174 (321)
T ss_pred CHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEE------ccccCCcchHHHHHHHHHHhCCCEEEEecCccc
Confidence 7532 266667777777654 789887432 111233334556665 45679999999999876
Q ss_pred CCC
Q 008172 411 GPF 413 (575)
Q Consensus 411 G~y 413 (575)
+.|
T Consensus 175 ~~~ 177 (321)
T PRK10415 175 CLF 177 (321)
T ss_pred ccc
Confidence 554
No 394
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=40.18 E-value=2.6e+02 Score=27.47 Aligned_cols=96 Identities=28% Similarity=0.394 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHhc--CCcEEEEEcCChhH-------HHHHhc---cCCCCcEEEEcCcHHHHHHhcccCCcEEEEe--
Q 008172 456 AEQICNCAVDMANNL--GVDAIFVYTKHGHM-------ASLLSR---NRPNPPIFAFTNDDSTRMALNLQWGVIPVLV-- 521 (575)
Q Consensus 456 ~~~ia~~av~~a~~~--~AkaIVVfT~SG~T-------Ar~VSr---~RP~~PIiAvT~~~~~aR~L~L~~GV~Pvl~-- 521 (575)
.+.|..++-.++..+ +.| |+++-..|+. |.++.| -||..|-+|+|.|..+.-.+..-+|-.-++.
T Consensus 24 ~~~I~~aa~~i~~~l~~G~K-vl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRq 102 (176)
T COG0279 24 IEAIERAAQLLVQSLLNGNK-VLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQ 102 (176)
T ss_pred HHHHHHHHHHHHHHHHcCCE-EEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHHHH
Confidence 355555555555444 445 8888888873 334555 4799999999977766555544444322221
Q ss_pred --------------cCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCC
Q 008172 522 --------------NLSDDMETNIAKTIDLIKMKGMVKYGDAVLVVLDLTP 558 (575)
Q Consensus 522 --------------~~~~d~d~~i~~al~~~~~~g~~k~GD~VVvv~G~~~ 558 (575)
..+-+. ..+-.|++.++++|. .++..+|..-
T Consensus 103 veA~g~~GDvLigISTSGNS-~nVl~Ai~~Ak~~gm-----~vI~ltG~~G 147 (176)
T COG0279 103 VEALGQPGDVLIGISTSGNS-KNVLKAIEAAKEKGM-----TVIALTGKDG 147 (176)
T ss_pred HHhcCCCCCEEEEEeCCCCC-HHHHHHHHHHHHcCC-----EEEEEecCCC
Confidence 122222 334557777887554 6666676543
No 395
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=40.15 E-value=4.5e+02 Score=27.37 Aligned_cols=129 Identities=17% Similarity=0.150 Sum_probs=76.4
Q ss_pred CCCccCHHHHHHHHHcCCCEEEecCcC-------------ChhhHHH-HHHHHhccCCCCceEEeeec------C-HHHH
Q 008172 262 TLSKKDWDDIEFGIAEGVDFIAMSFVC-------------DADSVRH-LKKYVSGKSSRSIKVLAKIE------N-LESL 320 (575)
Q Consensus 262 ~lsekD~~di~~al~~gvd~I~~SfV~-------------sa~dv~~-ir~~l~~~~~~~i~IIaKIE------t-~~av 320 (575)
-++--|.--.+.+-+.|+|.|.+..-- +.++... ++...+ +.+...|++=++ + .+++
T Consensus 19 ~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r--~~~~p~vvaD~pfg~y~~~~~~av 96 (264)
T PRK00311 19 MLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVAR--GAPRALVVADMPFGSYQASPEQAL 96 (264)
T ss_pred EEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHh--cCCCCcEEEeCCCCCccCCHHHHH
Confidence 345677777788888999999764210 1222222 233222 223456888775 2 3468
Q ss_pred hcHHHHHh-c-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEE----EehhhHHh---hhcCCCCChh---hH
Q 008172 321 QKFEEIVE-A-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVI----VASQLLES---MVEYPTPTRA---EV 388 (575)
Q Consensus 321 ~nldeI~~-~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvi----vaTq~LeS---M~~~p~PtrA---Ev 388 (575)
+|.-.+++ . ++||-+-=| ..+...|+++.++|.||+ +--|--.. +....+ |.+ |+
T Consensus 97 ~~a~r~~~~aGa~aVkiEdg------------~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~gr-t~~~a~~~ 163 (264)
T PRK00311 97 RNAGRLMKEAGAHAVKLEGG------------EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGR-DEEAAEKL 163 (264)
T ss_pred HHHHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecC-CHHHHHHH
Confidence 88888888 3 899999533 246678888899999996 22221111 111111 222 33
Q ss_pred -hhHHHHHHcccceEEec
Q 008172 389 -ADVSEAVRQYADALMLS 405 (575)
Q Consensus 389 -~Dv~nav~~G~D~vmLs 405 (575)
.|.-.....|+|+++|-
T Consensus 164 i~ra~a~~eAGA~~i~lE 181 (264)
T PRK00311 164 LEDAKALEEAGAFALVLE 181 (264)
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 33334557899999994
No 396
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=40.09 E-value=57 Score=32.43 Aligned_cols=62 Identities=21% Similarity=0.227 Sum_probs=45.5
Q ss_pred CCCceEEEecC--CCCCC----HHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhcCCceE
Q 008172 88 LRKTKMVCTIG--PACCS----MEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEKLFCIS 149 (575)
Q Consensus 88 ~r~tkIi~TiG--Pas~~----~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~~~~i~ 149 (575)
..++|||.+-= ..+.+ .+.+++|.+.|.+++++-....+.++...+++..++..+..+.|+.
T Consensus 111 ~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~~~~~p~i 178 (224)
T PF01487_consen 111 KGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVLRLLRFTKEFREEPDIPVI 178 (224)
T ss_dssp HTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHHHHHHHHHHHHHHTSSEEE
T ss_pred hCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHHHHHHHHHHHhhccCCcEE
Confidence 35799999864 22222 3677899999999999999999999998888888888776666654
No 397
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=39.95 E-value=1.5e+02 Score=31.68 Aligned_cols=63 Identities=21% Similarity=0.232 Sum_probs=50.9
Q ss_pred CCceEEEecCCCCC----C--------------HHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhcCCceEE
Q 008172 89 RKTKMVCTIGPACC----S--------------MEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEKLFCISV 150 (575)
Q Consensus 89 r~tkIi~TiGPas~----~--------------~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~~~~i~I 150 (575)
|++=+..++||-.. + .|.++.|++.|+|++=|--..- ..+.+..+..+|+..++.|..+++
T Consensus 113 k~rfVaGsiGPt~k~~~~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D-~l~~KaA~~a~~~~~~~~~~~LPv 191 (311)
T COG0646 113 KPRFVAGSIGPTNKTLSISPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFD-TLNAKAAVFAAREVFEELGVRLPV 191 (311)
T ss_pred CceEEEEeccCcCCcCCcCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhcc-HHHHHHHHHHHHHHHHhcCCcccE
Confidence 67788899999773 1 4678899999999999985543 556778899999999999887777
Q ss_pred EE
Q 008172 151 MI 152 (575)
Q Consensus 151 l~ 152 (575)
++
T Consensus 192 ~~ 193 (311)
T COG0646 192 MI 193 (311)
T ss_pred EE
Confidence 76
No 398
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.66 E-value=30 Score=35.94 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=31.5
Q ss_pred hcCCcEEEEEcCChhHHHHHhc----cCCCCcEEEEcCcH
Q 008172 469 NLGVDAIFVYTKHGHMASLLSR----NRPNPPIFAFTNDD 504 (575)
Q Consensus 469 ~~~AkaIVVfT~SG~TAr~VSr----~RP~~PIiAvT~~~ 504 (575)
+..++.+||-|.+|+||-.+|. ..|.++.+.+||=.
T Consensus 134 ~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~itPI~ 173 (259)
T PRK00561 134 KYRGSGLLIGPRTGSTALAKSAKGAVIFPRIDVIQIIELN 173 (259)
T ss_pred EEecCEEEEeCchHHHHHHHhCCCCccCCCCCeEEEEeeC
Confidence 4578999999999999999998 56789999999843
No 399
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=39.34 E-value=99 Score=31.64 Aligned_cols=80 Identities=11% Similarity=0.123 Sum_probs=55.1
Q ss_pred cccccccchhhhhhcccCCCCCceEEEecCCCCCCH------HHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhh
Q 008172 69 SLGFDAVSEGELREKGFLGLRKTKMVCTIGPACCSM------EDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNH 142 (575)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~r~tkIi~TiGPas~~~------e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~ 142 (575)
-+||+..++....+.-....+++++|.+-=-...++ +.+.+|.+.|.++.-+--.-.+.++...+++..|+..+
T Consensus 95 ~iDiEl~~~~~~~~~~~~~~~~~~vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivKiAvm~~~~~DvL~ll~~~~~~~~ 174 (231)
T COG0710 95 YIDIELSSPEDDVKEIIKFAKKHGVIVSYHDFEKTPPLEEIIERLDKMESLGADIVKIAVMPQSKEDVLDLLEATREFKE 174 (231)
T ss_pred EEEEEccCcchhHHHHHhccccCCEEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHHHHHHHHhccc
Confidence 356666665433333333345566777654333344 67899999999999999999999999999888887655
Q ss_pred hcCCceE
Q 008172 143 EKLFCIS 149 (575)
Q Consensus 143 ~~~~~i~ 149 (575)
.+.|+.
T Consensus 175 -~~~p~i 180 (231)
T COG0710 175 -AEKPVI 180 (231)
T ss_pred -cCCCEE
Confidence 666643
No 400
>PRK08638 threonine dehydratase; Validated
Probab=39.33 E-value=3.6e+02 Score=28.77 Aligned_cols=120 Identities=12% Similarity=0.136 Sum_probs=71.3
Q ss_pred HHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhh
Q 008172 354 EIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSR 433 (575)
Q Consensus 354 k~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 433 (575)
.-+...|+..|.|+.+. .|..+--..+...-..|++.++.. |. ..++++.+++++++- .++
T Consensus 88 ~alA~~aa~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~V~~~~-----~~-~~~~~~~a~~~a~~~-g~~- 148 (333)
T PRK08638 88 QGVALSCALLGIDGKVV-----------MPKGAPKSKVAATCGYGAEVVLHG-----DN-FNDTIAKVEEIVEEE-GRT- 148 (333)
T ss_pred HHHHHHHHHcCCCEEEE-----------eCCCCcHHHHHHHHHcCCEEEEEC-----cC-HHHHHHHHHHHHHhc-CCE-
Confidence 35567899999999985 233333334445557899888652 23 356766666554432 111
Q ss_pred hhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhc-CCcEEEEEcCChhHHHHHhcc----CCCCcEEEEcCcH
Q 008172 434 EENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNL-GVDAIFVYTKHGHMASLLSRN----RPNPPIFAFTNDD 504 (575)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~-~AkaIVVfT~SG~TAr~VSr~----RP~~PIiAvT~~~ 504 (575)
...+... +. ..+.-..-+.|+.+++ +.+.||+..-+|.+..-++++ .|...|+++=|..
T Consensus 149 ---------~~~~~~~--~~-~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g 212 (333)
T PRK08638 149 ---------FIPPYDD--PK-VIAGQGTIGLEILEDLWDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSEN 212 (333)
T ss_pred ---------EcCcCCC--cc-hhccccHHHHHHHhhcCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 0111111 11 1122223344555544 469999999999988777764 8999999997743
No 401
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.32 E-value=29 Score=36.51 Aligned_cols=35 Identities=26% Similarity=0.210 Sum_probs=30.8
Q ss_pred hcCCcEEEEEcCChhHHHHHhc----cCCCCcEEEEcCc
Q 008172 469 NLGVDAIFVYTKHGHMASLLSR----NRPNPPIFAFTND 503 (575)
Q Consensus 469 ~~~AkaIVVfT~SG~TAr~VSr----~RP~~PIiAvT~~ 503 (575)
+..++.+||-|.+|+||--+|. ..|.++.+.+||=
T Consensus 174 ~~~~DGlIVSTPTGSTAYslSAGGPIv~P~~~~~~ltPI 212 (287)
T PRK14077 174 EYFGDGVIVATPAGSTAYNMSANGPIIYPLSQVFILTPV 212 (287)
T ss_pred EEEcCEEEEeCCCchhHhHhhcCCcccCCCCCeEEEEec
Confidence 4579999999999999999998 5688999999873
No 402
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=39.17 E-value=2.1e+02 Score=29.02 Aligned_cols=97 Identities=19% Similarity=0.137 Sum_probs=51.5
Q ss_pred cCChhhHHHHHHHHhccCCCCceEEeeecC---HHHHhcHHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHH
Q 008172 287 VCDADSVRHLKKYVSGKSSRSIKVLAKIEN---LESLQKFEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQ 362 (575)
Q Consensus 287 V~sa~dv~~ir~~l~~~~~~~i~IIaKIEt---~~av~nldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~ 362 (575)
-++++.+.++.+.+++. ++.|..||=. .+.++-...+.+. +|+|-+.-+.-+ +..++ +.++..+
T Consensus 122 l~~p~~l~eiv~avr~~---~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~g---~~ad~-----~~I~~i~- 189 (233)
T cd02911 122 LKDPERLSEFIKALKET---GVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMDPG---NHADL-----KKIRDIS- 189 (233)
T ss_pred cCCHHHHHHHHHHHHhc---CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCCC---CCCcH-----HHHHHhc-
Confidence 34566666666666543 4678888821 1122212222222 787765322222 11121 2333333
Q ss_pred cCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccC
Q 008172 363 LNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGE 407 (575)
Q Consensus 363 ~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~E 407 (575)
.+.|||..- ..-|. .|+..++..|+|+||+.--
T Consensus 190 ~~ipVIgnG---------gI~s~---eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 190 TELFIIGNN---------SVTTI---ESAKEMFSYGADMVSVARA 222 (233)
T ss_pred CCCEEEEEC---------CcCCH---HHHHHHHHcCCCEEEEcCC
Confidence 579998643 33333 4566677789999999743
No 403
>PLN02979 glycolate oxidase
Probab=39.16 E-value=1.9e+02 Score=31.59 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=23.3
Q ss_pred CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 364 NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 364 gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
..||++..-+= .-.||+.|+..|+|++++.
T Consensus 278 ~~~Vi~dGGIr------------~G~Di~KALALGAdaV~iG 307 (366)
T PLN02979 278 RIPVFLDGGVR------------RGTDVFKALALGASGIFIG 307 (366)
T ss_pred CCeEEEeCCcC------------cHHHHHHHHHcCCCEEEEc
Confidence 37888754332 3579999999999999985
No 404
>PLN03013 cysteine synthase
Probab=39.01 E-value=3.4e+02 Score=30.34 Aligned_cols=123 Identities=10% Similarity=0.078 Sum_probs=69.5
Q ss_pred HHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhhhh
Q 008172 356 IIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSREE 435 (575)
Q Consensus 356 Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~ 435 (575)
+...|+..|.|+++. .|..+...-+...-..|++.+...+. .| | .++++..++++++...++
T Consensus 190 LA~~a~~~G~~~~Vv-----------vP~~~s~~K~~~ira~GAeVi~v~~~--~~-~-~~a~~~A~ela~~~~g~~--- 251 (429)
T PLN03013 190 LAFIAASRGYRLILT-----------MPASMSMERRVLLKAFGAELVLTDPA--KG-M-TGAVQKAEEILKNTPDAY--- 251 (429)
T ss_pred HHHHHHHcCCCEEEE-----------ECCCCcHHHHHHHHHcCCEEEEECCC--CC-h-HHHHHHHHHHHhhcCCeE---
Confidence 455799999999985 35444444555566799998876432 12 1 234444443332211111
Q ss_pred hhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhc--CCcEEEEEcCChhHHH----HHhccCCCCcEEEEcCcHH
Q 008172 436 NRQSALCGQRQLGESLHDRIAEQICNCAVDMANNL--GVDAIFVYTKHGHMAS----LLSRNRPNPPIFAFTNDDS 505 (575)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~--~AkaIVVfT~SG~TAr----~VSr~RP~~PIiAvT~~~~ 505 (575)
...|... +.++..-...-+.|+.+++ ..++||+..-+|.|.. .+-.++|.+.|+++-|...
T Consensus 252 -------~~~qy~N--p~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs 318 (429)
T PLN03013 252 -------MLQQFDN--PANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTES 318 (429)
T ss_pred -------eCCCCCC--HHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCC
Confidence 1112111 1111111222345666666 4799999999997665 4444579999999988653
No 405
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.90 E-value=31 Score=35.84 Aligned_cols=36 Identities=25% Similarity=0.201 Sum_probs=31.5
Q ss_pred hcCCcEEEEEcCChhHHHHHhc----cCCCCcEEEEcCcH
Q 008172 469 NLGVDAIFVYTKHGHMASLLSR----NRPNPPIFAFTNDD 504 (575)
Q Consensus 469 ~~~AkaIVVfT~SG~TAr~VSr----~RP~~PIiAvT~~~ 504 (575)
+..++.+||-|.+|+||-.+|. ..|.++.+.+||=.
T Consensus 146 ~~~~DGlIVsTPtGSTAY~lSAGGPIv~P~~~~~~itPI~ 185 (264)
T PRK03501 146 TFRGDGMVVSTPTGSTAYNKSVRGAVVDPLIPCFQVSELA 185 (264)
T ss_pred EEecCEEEEeCCCchHHHHhhcCCcccCCCCCeEEEEecc
Confidence 4579999999999999999998 56789999998754
No 406
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=38.86 E-value=90 Score=31.88 Aligned_cols=57 Identities=30% Similarity=0.515 Sum_probs=38.0
Q ss_pred HHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccce
Q 008172 323 FEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADA 401 (575)
Q Consensus 323 ldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~ 401 (575)
++.+++. .|+|||| |=+|+. ......+++++++...|++. .|.-. +.+..++|+
T Consensus 25 ~~~~~~~gtdai~vG-GS~~vt------~~~~~~~v~~ik~~~lPvil------------fp~~~------~~i~~~aDa 79 (232)
T PRK04169 25 LEAICESGTDAIIVG-GSDGVT------EENVDELVKAIKEYDLPVIL------------FPGNI------EGISPGADA 79 (232)
T ss_pred HHHHHhcCCCEEEEc-CCCccc------hHHHHHHHHHHhcCCCCEEE------------eCCCc------cccCcCCCE
Confidence 3566665 7999998 544444 23344666777778899997 34442 345677999
Q ss_pred EEe
Q 008172 402 LML 404 (575)
Q Consensus 402 vmL 404 (575)
++.
T Consensus 80 ~l~ 82 (232)
T PRK04169 80 YLF 82 (232)
T ss_pred EEE
Confidence 876
No 407
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=38.79 E-value=4.6e+02 Score=27.11 Aligned_cols=128 Identities=23% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCccCHHHHHHHHHcCCCEEEec--------------CcCChhhHHHHHHHHhccCCCCceEEeeec-------CHHHHh
Q 008172 263 LSKKDWDDIEFGIAEGVDFIAMS--------------FVCDADSVRHLKKYVSGKSSRSIKVLAKIE-------NLESLQ 321 (575)
Q Consensus 263 lsekD~~di~~al~~gvd~I~~S--------------fV~sa~dv~~ir~~l~~~~~~~i~IIaKIE-------t~~av~ 321 (575)
++--|.--.+.+-+.|+|.|... .+.-.+-+..++...+..+ ...|++=++ -.++++
T Consensus 17 ~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~--~p~viaD~~fg~y~~~~~~av~ 94 (254)
T cd06557 17 LTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAP--RALVVADMPFGSYQTSPEQALR 94 (254)
T ss_pred EeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCC--CCeEEEeCCCCcccCCHHHHHH
Q ss_pred cHHHHHh-c-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEE--------EehhhHHhhhcCCCCChhh--Hh
Q 008172 322 KFEEIVE-A-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVI--------VASQLLESMVEYPTPTRAE--VA 389 (575)
Q Consensus 322 nldeI~~-~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvi--------vaTq~LeSM~~~p~PtrAE--v~ 389 (575)
|.-.+++ . ++||.|-=| ..+...|+++.++|.||+ ..+++=.-.+..-...+++ +.
T Consensus 95 ~a~r~~~~aGa~aVkiEd~------------~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ 162 (254)
T cd06557 95 NAARLMKEAGADAVKLEGG------------AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLE 162 (254)
T ss_pred HHHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHH
Q ss_pred hHHHHHHcccceEEe
Q 008172 390 DVSEAVRQYADALML 404 (575)
Q Consensus 390 Dv~nav~~G~D~vmL 404 (575)
|.-.....|+|+++|
T Consensus 163 ra~a~~~AGA~~i~l 177 (254)
T cd06557 163 DALALEEAGAFALVL 177 (254)
T ss_pred HHHHHHHCCCCEEEE
No 408
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=38.75 E-value=3e+02 Score=29.14 Aligned_cols=138 Identities=17% Similarity=0.126 Sum_probs=74.7
Q ss_pred HHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc----CCEEEEeC-CCCCC
Q 008172 268 WDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA----SDGIMVAR-GDLGV 342 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~----sDgImIaR-GDLg~ 342 (575)
....+...+.|+|+|..+...++ +.++...++... +..++|=+-| ++|-+.. +|.|=--= |.-+-
T Consensus 77 ~~Ea~~L~eaGvDiIDaT~r~rP--~~~~~~~iK~~~--~~l~MAD~st------leEal~a~~~Gad~I~TTl~gyT~~ 146 (283)
T cd04727 77 FVEAQILEALGVDMIDESEVLTP--ADEEHHIDKHKF--KVPFVCGARN------LGEALRRISEGAAMIRTKGEAGTGN 146 (283)
T ss_pred HHHHHHHHHcCCCEEeccCCCCc--HHHHHHHHHHHc--CCcEEccCCC------HHHHHHHHHCCCCEEEecCCCCCCc
Confidence 56666778999999999998888 345555554432 4677775544 4444333 33332110 00000
Q ss_pred -----------------CCCC--CChHH-------HHHHHHHHHHHcCCCEE-EehhhHHhhhcCCCCChhhHhhHHHHH
Q 008172 343 -----------------DIPL--EQIPT-------VQEIIIHVCRQLNKPVI-VASQLLESMVEYPTPTRAEVADVSEAV 395 (575)
Q Consensus 343 -----------------e~~~--e~v~~-------~Qk~Ii~~c~~~gKPvi-vaTq~LeSM~~~p~PtrAEv~Dv~nav 395 (575)
..++ +..+. -.+.+-+.+.....||+ +| ....-|.+ |+..+.
T Consensus 147 ~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iA--------eGGI~Tpe---na~~v~ 215 (283)
T cd04727 147 VVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFA--------AGGVATPA---DAALMM 215 (283)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEE--------eCCCCCHH---HHHHHH
Confidence 0000 00000 00112233334468987 33 11222333 346666
Q ss_pred HcccceEEeccCcCCCCCHHHHHHHHHHHHH
Q 008172 396 RQYADALMLSGESAIGPFGQKAVSVLQMASS 426 (575)
Q Consensus 396 ~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~ 426 (575)
..|+|+++..+.-..-..|.+.++.+.....
T Consensus 216 e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~ 246 (283)
T cd04727 216 QLGADGVFVGSGIFKSENPEKRARAIVEAVT 246 (283)
T ss_pred HcCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 7999999998766555789998888776543
No 409
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=38.70 E-value=66 Score=33.54 Aligned_cols=87 Identities=13% Similarity=0.239 Sum_probs=56.8
Q ss_pred hHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHh-cCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 292 SVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVE-ASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 292 dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~-~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
.++.+++.+.+.+ .++.|.+ ++..---+|+++++. -.|.|+.+-+++ .....+.+.|+++++|+|.+
T Consensus 85 Kve~~~~rl~~IN-P~~~V~~-i~~~i~~e~~~~ll~~~~D~VIdaiD~~----------~~k~~L~~~c~~~~ip~I~~ 152 (268)
T PRK15116 85 KAEVMAERIRQIN-PECRVTV-VDDFITPDNVAEYMSAGFSYVIDAIDSV----------RPKAALIAYCRRNKIPLVTT 152 (268)
T ss_pred HHHHHHHHHHhHC-CCcEEEE-EecccChhhHHHHhcCCCCEEEEcCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 4555566666655 4555543 232222357777775 378887763332 34557899999999999976
Q ss_pred hhhHHhhhcCCCCChhhHhhHHHH
Q 008172 371 SQLLESMVEYPTPTRAEVADVSEA 394 (575)
Q Consensus 371 Tq~LeSM~~~p~PtrAEv~Dv~na 394 (575)
.-. -..-.||+-++.|++..
T Consensus 153 gGa----g~k~dp~~~~~~di~~t 172 (268)
T PRK15116 153 GGA----GGQIDPTQIQVVDLAKT 172 (268)
T ss_pred CCc----ccCCCCCeEEEEeeecc
Confidence 432 24568999999999663
No 410
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.58 E-value=27 Score=36.76 Aligned_cols=35 Identities=26% Similarity=0.229 Sum_probs=30.4
Q ss_pred hcCCcEEEEEcCChhHHHHHhc----cCCCCcEEEEcCc
Q 008172 469 NLGVDAIFVYTKHGHMASLLSR----NRPNPPIFAFTND 503 (575)
Q Consensus 469 ~~~AkaIVVfT~SG~TAr~VSr----~RP~~PIiAvT~~ 503 (575)
+..++.+||-|.||+||--+|. ..|.++.+.+||=
T Consensus 173 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~ltPI 211 (292)
T PRK01911 173 SYWADGLIVATPTGSTGYSLSCGGPIIVPDAKSFVITPI 211 (292)
T ss_pred EEeeceeEECCCCcHHHHHhhCCCcccCCCCCEEEEEec
Confidence 4579999999999999999998 5678899999863
No 411
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=38.58 E-value=3.5e+02 Score=27.96 Aligned_cols=123 Identities=13% Similarity=0.096 Sum_probs=68.9
Q ss_pred HHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCH-HHHHHHHHHHHHHHhhhhh
Q 008172 355 IIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFG-QKAVSVLQMASSRMELWSR 433 (575)
Q Consensus 355 ~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yP-veaV~~m~~I~~~aE~~~~ 433 (575)
-+...|+++|.|+.+. .|..+.-.-+...-..|++.+..-+ .|. .++++..+++.++-..+
T Consensus 71 alA~~a~~~Gl~~~i~-----------vp~~~~~~k~~~~~~~GA~v~~~~~-----~~~~~~~~~~a~~~~~~~~~~-- 132 (298)
T TIGR01139 71 ALAMVAAARGYKLILT-----------MPETMSIERRKLLKAYGAELVLTPG-----AEGMKGAIAKAEEIAASTPNS-- 132 (298)
T ss_pred HHHHHHHHcCCeEEEE-----------eCCccCHHHHHHHHHcCCEEEEECC-----CCCHHHHHHHHHHHHHhCCCc--
Confidence 4556899999999985 2333322234555679999886643 342 34555444332211100
Q ss_pred hhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcC--CcEEEEEcCChhHHHH----HhccCCCCcEEEEcCcH
Q 008172 434 EENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLG--VDAIFVYTKHGHMASL----LSRNRPNPPIFAFTNDD 504 (575)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--AkaIVVfT~SG~TAr~----VSr~RP~~PIiAvT~~~ 504 (575)
.+ ...+.. .+..+..-....+.|+..+++ .+.||+.+-+|.++-- +..++|...|++|-+..
T Consensus 133 ------~~-~~~~~~--n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~ 200 (298)
T TIGR01139 133 ------YF-MLQQFE--NPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAE 200 (298)
T ss_pred ------EE-cccccC--CcccHHHHHHHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCC
Confidence 00 011111 111111112234456666664 6899999999987654 44567999999998754
No 412
>PRK06801 hypothetical protein; Provisional
Probab=38.50 E-value=4.7e+02 Score=27.57 Aligned_cols=105 Identities=12% Similarity=0.122 Sum_probs=69.6
Q ss_pred CceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCC--CC
Q 008172 307 SIKVLAKIENLESLQKFEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYP--TP 383 (575)
Q Consensus 307 ~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p--~P 383 (575)
.+.+.....+-.-++.+++-++. .+.||+.-- .+|.++-...-+++.+.|+.+|.+|=..-..+-.....+ .+
T Consensus 74 ~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S----~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~ 149 (286)
T PRK06801 74 DIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGS----TLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGE 149 (286)
T ss_pred CCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCC----CCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCC
Confidence 57788888887666666666666 899999533 347777777788999999999998843322221111100 00
Q ss_pred ----ChhhHhhHHHHH-HcccceEEeccCcCCCCCHH
Q 008172 384 ----TRAEVADVSEAV-RQYADALMLSGESAIGPFGQ 415 (575)
Q Consensus 384 ----trAEv~Dv~nav-~~G~D~vmLs~ETa~G~yPv 415 (575)
......+...++ ..|+|++-.+-=|+-|+|+-
T Consensus 150 ~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~ 186 (286)
T PRK06801 150 ADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKG 186 (286)
T ss_pred cccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCC
Confidence 011123344555 68999999999999999963
No 413
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=38.46 E-value=84 Score=32.93 Aligned_cols=55 Identities=11% Similarity=0.094 Sum_probs=45.6
Q ss_pred eEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhcCCc
Q 008172 92 KMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEKLFC 147 (575)
Q Consensus 92 kIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~~~~ 147 (575)
.+..=+ --+.+.+.+++.+++|.+.+-|.-||.+.++..+.-+.++++....|.+
T Consensus 76 pv~lHl-DH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~ 130 (281)
T PRK06806 76 PVAVHF-DHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGAT 130 (281)
T ss_pred CEEEEC-CCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 333333 3455799999999999999999999999999989999999888887765
No 414
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=38.39 E-value=4.4e+02 Score=27.76 Aligned_cols=98 Identities=13% Similarity=0.139 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCCEEEec------CcCChhhHHHHHH-HHhccCCCCceEEeeec---CHHHHhcHHHHHhc-CCEEEEe
Q 008172 268 WDDIEFGIAEGVDFIAMS------FVCDADSVRHLKK-YVSGKSSRSIKVLAKIE---NLESLQKFEEIVEA-SDGIMVA 336 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~S------fV~sa~dv~~ir~-~l~~~~~~~i~IIaKIE---t~~av~nldeI~~~-sDgImIa 336 (575)
.+.+++.++.|+++|++. +.-|.++=+++-+ ..+..+ .++.||+-+= +.++++....--+. +|++|+-
T Consensus 32 ~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~-grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~ 110 (309)
T cd00952 32 ARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVA-GRVPVFVGATTLNTRDTIARTRALLDLGADGTMLG 110 (309)
T ss_pred HHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhC-CCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEEC
Confidence 455678899999999863 2234444444433 343343 4688888883 45666655555555 8999997
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHc-CCCEEEe
Q 008172 337 RGDLGVDIPLEQIPTVQEIIIHVCRQL-NKPVIVA 370 (575)
Q Consensus 337 RGDLg~e~~~e~v~~~Qk~Ii~~c~~~-gKPviva 370 (575)
+-..- ....+.+...-+.| |.+. +.|+++-
T Consensus 111 ~P~y~-~~~~~~l~~yf~~v---a~a~~~lPv~iY 141 (309)
T cd00952 111 RPMWL-PLDVDTAVQFYRDV---AEAVPEMAIAIY 141 (309)
T ss_pred CCcCC-CCCHHHHHHHHHHH---HHhCCCCcEEEE
Confidence 54321 01113333333333 4445 4787764
No 415
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=38.31 E-value=3.4e+02 Score=29.00 Aligned_cols=95 Identities=18% Similarity=0.277 Sum_probs=0.0
Q ss_pred CCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCC-------CChH
Q 008172 278 GVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPL-------EQIP 350 (575)
Q Consensus 278 gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~-------e~v~ 350 (575)
|+..+...+..+.++..+....+.+.+ . +|++=+- +++|. ..-+
T Consensus 96 ~~~i~~~~~~~~~~~~~d~~~~~~~~~-----------------------~-ad~ielN-----iScPnt~g~~~l~~~~ 146 (310)
T COG0167 96 GVNIGKNKGGPSEEAWADYARLLEEAG-----------------------D-ADAIELN-----ISCPNTPGGRALGQDP 146 (310)
T ss_pred CcceEEecCCCcHHHHHHHHHHHHhcC-----------------------C-CCEEEEE-----ccCCCCCChhhhccCH
Q ss_pred HHHHHHHHHHHHc-CCCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHcccceEEeccCcCCC
Q 008172 351 TVQEIIIHVCRQL-NKPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQYADALMLSGESAIG 411 (575)
Q Consensus 351 ~~Qk~Ii~~c~~~-gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~G~D~vmLs~ETa~G 411 (575)
..-.++++++++. .+||++ +-.|+.+++.+++. +...|+|++.+++=|-.|
T Consensus 147 e~l~~l~~~vk~~~~~Pv~v----------Kl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~ 199 (310)
T COG0167 147 ELLEKLLEAVKAATKVPVFV----------KLAPNITDIDEIAKAAEEAGADGLIAINTTKSG 199 (310)
T ss_pred HHHHHHHHHHHhcccCceEE----------EeCCCHHHHHHHHHHHHHcCCcEEEEEeecccc
No 416
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=38.28 E-value=4.1e+02 Score=29.19 Aligned_cols=126 Identities=10% Similarity=0.022 Sum_probs=69.7
Q ss_pred HHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhhh
Q 008172 355 IIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSRE 434 (575)
Q Consensus 355 ~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 434 (575)
-+...|+++|.++.+- .|..+.-..+...-..|++.+...+... ...+-..++...++.++.+.++
T Consensus 76 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~v~~~~~~~~-~~~~~~~~~~a~~l~~~~~~~~-- 141 (454)
T TIGR01137 76 GLALVAAIKGYKCIIV-----------LPEKMSNEKVDVLKALGAEIVRTPTAAA-FDSPESHIGVAKRLVREIPGAH-- 141 (454)
T ss_pred HHHHHHHHcCCeEEEE-----------eCCCcCHHHHHHHHHCCCEEEEcCCccC-CCchHHHHHHHHHHHHhCCCcE--
Confidence 4566899999999984 2333333344556679999877643211 1112122333333322211110
Q ss_pred hhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcC--CcEEEEEcCChhHHHHHhc----cCCCCcEEEEcCcH
Q 008172 435 ENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLG--VDAIFVYTKHGHMASLLSR----NRPNPPIFAFTNDD 504 (575)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--AkaIVVfT~SG~TAr~VSr----~RP~~PIiAvT~~~ 504 (575)
...+... +.++..-....+.|+..+++ .++||+..-+|.|+.-+++ ++|.+.|+++.+..
T Consensus 142 --------~~~~~~~--~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~ 207 (454)
T TIGR01137 142 --------ILDQYNN--PSNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEG 207 (454)
T ss_pred --------ecccCCC--hhhHHHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCC
Confidence 0111111 11121113344567777764 6999999999997765554 67999999998754
No 417
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=38.27 E-value=86 Score=35.46 Aligned_cols=116 Identities=20% Similarity=0.206 Sum_probs=78.4
Q ss_pred HcCCCEEEe---cCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHH-HHhc-CCEEEEeCCCCCCCCCC----
Q 008172 276 AEGVDFIAM---SFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEE-IVEA-SDGIMVARGDLGVDIPL---- 346 (575)
Q Consensus 276 ~~gvd~I~~---SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nlde-I~~~-sDgImIaRGDLg~e~~~---- 346 (575)
.-|+|.|.= ..+.|.+|+.++..-|++.+ +.-.|..|+=...+++.+.. .++. +|.|.|.=.|=|.-..+
T Consensus 270 ~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~-~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~ 348 (485)
T COG0069 270 PPGVGLISPPPHHDIYSIEDLAQLIKDLKEAN-PWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSI 348 (485)
T ss_pred CCCCCCcCCCCcccccCHHHHHHHHHHHHhcC-CCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHh
Confidence 346665542 24678999999988888876 44559999987778777766 5555 89999986665544322
Q ss_pred --------CChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEe
Q 008172 347 --------EQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALML 404 (575)
Q Consensus 347 --------e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmL 404 (575)
.-++.+++.+...-.+ .|+.+.+.--| -| -.||+-|++.|||.+-.
T Consensus 349 ~~~GiP~e~glae~~q~L~~~glR-d~v~l~~~Ggl--------~T---g~DVaka~aLGAd~v~~ 402 (485)
T COG0069 349 DHAGIPWELGLAETHQTLVLNGLR-DKVKLIADGGL--------RT---GADVAKAAALGADAVGF 402 (485)
T ss_pred hcCCchHHHHHHHHHHHHHHcCCc-ceeEEEecCCc--------cC---HHHHHHHHHhCcchhhh
Confidence 2466666666555444 56666554333 12 35899999999998654
No 418
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=38.16 E-value=2.8e+02 Score=29.84 Aligned_cols=121 Identities=11% Similarity=0.150 Sum_probs=71.1
Q ss_pred HHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhh
Q 008172 354 EIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSR 433 (575)
Q Consensus 354 k~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 433 (575)
.-+...|++.|.|+.+. .|..+.-..+...-..|++.++. + ...-++.+...+++++-. ++
T Consensus 61 ~alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~V~~~-~-----~~~~~a~~~a~~~~~~~~-~~- 121 (380)
T TIGR01127 61 QGVAYAAKKFGIKAVIV-----------MPESAPPSKVKATKSYGAEVILH-G-----DDYDEAYAFATSLAEEEG-RV- 121 (380)
T ss_pred HHHHHHHHHcCCCEEEE-----------EcCCCcHHHHHHHHHCCCEEEEE-C-----CCHHHHHHHHHHHHHhcC-CE-
Confidence 45667899999999984 24333334556666899987654 3 223456554444432211 10
Q ss_pred hhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhc-CCcEEEEEcCChhHHHHHhc----cCCCCcEEEEcCcHH
Q 008172 434 EENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNL-GVDAIFVYTKHGHMASLLSR----NRPNPPIFAFTNDDS 505 (575)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~-~AkaIVVfT~SG~TAr~VSr----~RP~~PIiAvT~~~~ 505 (575)
..++... +. .......-+.++..++ +.++||+..-+|.++.-+++ ++|...||+|-|...
T Consensus 122 ---------~~~~~~~--~~-~~~g~~t~~~Ei~~q~~~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~ 186 (380)
T TIGR01127 122 ---------FVHPFDD--EF-VMAGQGTIGLEIMEDIPDVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGA 186 (380)
T ss_pred ---------ecCCCCC--hh-hhhhhHHHHHHHHHhCCCCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 1111111 11 1122233345666666 47999999999997765544 579999999988553
No 419
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=38.07 E-value=2.9e+02 Score=28.46 Aligned_cols=96 Identities=16% Similarity=0.231 Sum_probs=53.1
Q ss_pred cHHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHH---cCCCEEEehhhHHhhhcCCCCChhhHhhHHH-HHH
Q 008172 322 KFEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQ---LNKPVIVASQLLESMVEYPTPTRAEVADVSE-AVR 396 (575)
Q Consensus 322 nldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~---~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~ 396 (575)
+++-.++. .||++++ |= +-|...-. ..=.+++++.+.+ -..|+++.+. ..+-.|.-+.+. |..
T Consensus 27 ~i~~l~~~Gv~gl~~~-Gs-tGE~~~Lt-~~Er~~l~~~~~~~~~~~~~vi~gv~---------~~st~~~i~~a~~a~~ 94 (289)
T PF00701_consen 27 LIDFLIEAGVDGLVVL-GS-TGEFYSLT-DEERKELLEIVVEAAAGRVPVIAGVG---------ANSTEEAIELARHAQD 94 (289)
T ss_dssp HHHHHHHTTSSEEEES-ST-TTTGGGS--HHHHHHHHHHHHHHHTTSSEEEEEEE---------SSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEC-CC-CcccccCC-HHHHHHHHHHHHHHccCceEEEecCc---------chhHHHHHHHHHHHhh
Confidence 34555555 8999995 21 11221111 1112344444333 3457886542 334555555554 778
Q ss_pred cccceEEeccCcCCCCCHHHHHHHHHHHHHHHh
Q 008172 397 QYADALMLSGESAIGPFGQKAVSVLQMASSRME 429 (575)
Q Consensus 397 ~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 429 (575)
.|+|++|+..=--...-+-+.++..+.|+..++
T Consensus 95 ~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~ 127 (289)
T PF00701_consen 95 AGADAVLVIPPYYFKPSQEELIDYFRAIADATD 127 (289)
T ss_dssp TT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSS
T ss_pred cCceEEEEeccccccchhhHHHHHHHHHHhhcC
Confidence 999999997654444556677788888875554
No 420
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=38.01 E-value=2.4e+02 Score=30.77 Aligned_cols=100 Identities=13% Similarity=0.093 Sum_probs=56.1
Q ss_pred hhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEE
Q 008172 290 ADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVI 368 (575)
Q Consensus 290 a~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvi 368 (575)
++.+.++.+.+.+. .+.+..++......+..+.+++. +|.|.+.-..-........- -...+.+.+++.+.|||
T Consensus 117 p~l~~~iv~~~~~~---~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~--~~~~i~~~ik~~~ipVI 191 (368)
T PRK08649 117 PELITERIAEIRDA---GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEG--EPLNLKEFIYELDVPVI 191 (368)
T ss_pred HHHHHHHHHHHHhC---eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcC--CHHHHHHHHHHCCCCEE
Confidence 44444444444332 24455566555677777777777 89999942111111111110 12335666777899998
Q ss_pred EehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccC
Q 008172 369 VASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGE 407 (575)
Q Consensus 369 vaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~E 407 (575)
.. + ..|.. +...++..|+|+||...+
T Consensus 192 aG-~---------V~t~e---~A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 192 VG-G---------CVTYT---TALHLMRTGAAGVLVGIG 217 (368)
T ss_pred Ee-C---------CCCHH---HHHHHHHcCCCEEEECCC
Confidence 62 2 34444 345556689999999643
No 421
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=37.96 E-value=65 Score=32.66 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCEEEecCcCC--hhhHHHHHHHHhccCCCCceEEe--eecCHHHHhcHHHHHhc-CCEEEEeCC
Q 008172 268 WDDIEFGIAEGVDFIAMSFVCD--ADSVRHLKKYVSGKSSRSIKVLA--KIENLESLQKFEEIVEA-SDGIMVARG 338 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV~s--a~dv~~ir~~l~~~~~~~i~IIa--KIEt~~av~nldeI~~~-sDgImIaRG 338 (575)
.+..+...+.|+|+|-++--.. ..|...+++.- .++.||+ -|.+.+- ..+.++. +|++|||||
T Consensus 155 ~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~-----~~ipVIgnGgI~s~ed---a~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 155 EELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS-----TELFIIGNNSVTTIES---AKEMFSYGADMVSVARA 222 (233)
T ss_pred HHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc-----CCCEEEEECCcCCHHH---HHHHHHcCCCEEEEcCC
Confidence 3444566789999886643222 33555555542 1355655 4555433 3344444 999999999
No 422
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=37.79 E-value=3.4e+02 Score=29.77 Aligned_cols=125 Identities=13% Similarity=0.115 Sum_probs=69.0
Q ss_pred HHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhhh
Q 008172 355 IIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSRE 434 (575)
Q Consensus 355 ~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 434 (575)
-+...|+..|.|+.+. .|..+--..+.+.-..|++.+.-. + ..-++.+...++.++- .++.-
T Consensus 127 alA~~aa~~Gi~~~Iv-----------vP~~~~~~K~~~ir~~GAeVi~~~-----~-~~~~a~~~a~~~a~~~-g~~~v 188 (396)
T TIGR03528 127 GVAWAANQLGQKSVVY-----------MPKGSAQIRLENIRAEGAECTITD-----L-NYDDAVRLAWKMAQEN-GWVMV 188 (396)
T ss_pred HHHHHHHHcCCCEEEE-----------EeCCCcHHHHHHHHhcCCEEEEEC-----C-CHHHHHHHHHHHHHhc-CcEee
Confidence 4567899999999985 233333345667778999977653 2 3456777666664431 11110
Q ss_pred hhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcC------CcEEEEEcCChhHHHHHhc-----cCCCCc-EEEEcC
Q 008172 435 ENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLG------VDAIFVYTKHGHMASLLSR-----NRPNPP-IFAFTN 502 (575)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~------AkaIVVfT~SG~TAr~VSr-----~RP~~P-IiAvT~ 502 (575)
. .+ ..++.. ..+.....-...-+.|+..+++ .+.||+.+-+|.++--++. ++|..| |++|-|
T Consensus 189 ~----~~-~~~~~~-~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep 262 (396)
T TIGR03528 189 Q----DT-AWEGYE-KIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEP 262 (396)
T ss_pred c----cc-cccccc-cCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEcc
Confidence 0 00 000110 1111112223334556666654 5889998888876544433 356664 888877
Q ss_pred c
Q 008172 503 D 503 (575)
Q Consensus 503 ~ 503 (575)
.
T Consensus 263 ~ 263 (396)
T TIGR03528 263 D 263 (396)
T ss_pred C
Confidence 5
No 423
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=37.77 E-value=51 Score=33.40 Aligned_cols=61 Identities=34% Similarity=0.553 Sum_probs=36.1
Q ss_pred hcHHHHHhc--CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcc
Q 008172 321 QKFEEIVEA--SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQY 398 (575)
Q Consensus 321 ~nldeI~~~--sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G 398 (575)
+.+++++.. .|+|||| |=+++. +.+....+. +++.++ ..|++. .|... +.+..|
T Consensus 15 ~~~~~~~~~~gtdai~vG-GS~~v~---~~~~~~~~~-ik~~~~-~~Pvil------------fp~~~------~~i~~~ 70 (219)
T cd02812 15 EEIAKLAEESGTDAIMVG-GSDGVS---STLDNVVRL-IKRIRR-PVPVIL------------FPSNP------EAVSPG 70 (219)
T ss_pred HHHHHHHHhcCCCEEEEC-Cccchh---hhHHHHHHH-HHHhcC-CCCEEE------------eCCCc------cccCcC
Confidence 346777775 6999999 555554 222222222 222233 699997 46554 233688
Q ss_pred cceEEec
Q 008172 399 ADALMLS 405 (575)
Q Consensus 399 ~D~vmLs 405 (575)
+|++++-
T Consensus 71 aDa~l~~ 77 (219)
T cd02812 71 ADAYLFP 77 (219)
T ss_pred CCEEEEE
Confidence 9998874
No 424
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=37.59 E-value=71 Score=34.87 Aligned_cols=120 Identities=18% Similarity=0.159 Sum_probs=62.9
Q ss_pred HHHHcCCCEEEec---CcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHH-hc-CCEEEEeCCCCCCCC---
Q 008172 273 FGIAEGVDFIAMS---FVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIV-EA-SDGIMVARGDLGVDI--- 344 (575)
Q Consensus 273 ~al~~gvd~I~~S---fV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~-~~-sDgImIaRGDLg~e~--- 344 (575)
+.+..|.|.+.-| -+.|.+|+.++.+.|++.+ ....|-.|+=.-..++.+...+ +. +|.|.|.=++=|.-.
T Consensus 167 R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~-~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~ 245 (368)
T PF01645_consen 167 RGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELN-PGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPL 245 (368)
T ss_dssp HTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH--TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEEC
T ss_pred hCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhC-CCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCch
Confidence 3456677777644 3678888888888888876 5678888886555555554432 22 899999866544322
Q ss_pred ------CCCChHHHHHHHHHHHHHc---CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 345 ------PLEQIPTVQEIIIHVCRQL---NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 345 ------~~e~v~~~Qk~Ii~~c~~~---gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
|+|-. ....+..+...+. ++..++++-=| .--.|++-|+..|||++.+.
T Consensus 246 ~~~d~~GlP~~-~~l~~a~~~L~~~glr~~V~Li~sGgl-----------~t~~dv~kalaLGAD~v~ig 303 (368)
T PF01645_consen 246 TSMDHVGLPTE-YALARAHQALVKNGLRDRVSLIASGGL-----------RTGDDVAKALALGADAVYIG 303 (368)
T ss_dssp CHHHHC---HH-HHHHHHHHHHHCTT-CCCSEEEEESS-------------SHHHHHHHHHCT-SEEE-S
T ss_pred hHHhhCCCcHH-HHHHHHHHHHHHcCCCCceEEEEeCCc-----------cCHHHHHHHHhcCCCeeEec
Confidence 22221 1222333343433 34444444333 12568999999999999875
No 425
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=37.56 E-value=1.9e+02 Score=31.54 Aligned_cols=93 Identities=23% Similarity=0.354 Sum_probs=49.1
Q ss_pred ChhhHHHHHHHHhccCCCCceEEee-ecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCC
Q 008172 289 DADSVRHLKKYVSGKSSRSIKVLAK-IENLESLQKFEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKP 366 (575)
Q Consensus 289 sa~dv~~ir~~l~~~~~~~i~IIaK-IEt~~av~nldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKP 366 (575)
+-++++.+|+... ..+|.| |=+ .++....++. +|||.|+= -=|.+ ++..+..-..+.+.+...+.|
T Consensus 224 ~w~~i~~ir~~~~------~pviiKgV~~---~eda~~a~~~G~d~I~VSn-hGGrq--ld~~~~~~~~L~ei~~~~~~~ 291 (361)
T cd04736 224 NWQDLRWLRDLWP------HKLLVKGIVT---AEDAKRCIELGADGVILSN-HGGRQ--LDDAIAPIEALAEIVAATYKP 291 (361)
T ss_pred CHHHHHHHHHhCC------CCEEEecCCC---HHHHHHHHHCCcCEEEECC-CCcCC--CcCCccHHHHHHHHHHHhCCe
Confidence 3567777776542 234444 322 2222233333 78888751 11111 122222222333333344789
Q ss_pred EEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 367 VIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 367 vivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
||+...+= --.||..|+..|||++|+.
T Consensus 292 vi~dGGIr------------~g~Dv~KALaLGA~aV~iG 318 (361)
T cd04736 292 VLIDSGIR------------RGSDIVKALALGANAVLLG 318 (361)
T ss_pred EEEeCCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 88754322 2469999999999999985
No 426
>PTZ00344 pyridoxal kinase; Provisional
Probab=37.43 E-value=1.6e+02 Score=30.59 Aligned_cols=112 Identities=13% Similarity=0.162 Sum_probs=71.2
Q ss_pred cCCCCCccCHHHHHHHHH-----cCCCEEEecCcCChhhHHHHHHHHhcc--CCCCceEEee---------ecCHHHHhc
Q 008172 259 GLPTLSKKDWDDIEFGIA-----EGVDFIAMSFVCDADSVRHLKKYVSGK--SSRSIKVLAK---------IENLESLQK 322 (575)
Q Consensus 259 ~lp~lsekD~~di~~al~-----~gvd~I~~SfV~sa~dv~~ir~~l~~~--~~~~i~IIaK---------IEt~~av~n 322 (575)
.-|.+++.+.+.+...+. ..++.|..-|+-+++.+..+.+++... .+.++.++.= .-..+..+.
T Consensus 53 ~g~~i~~~~~~~~l~~l~~~~~~~~~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~ 132 (296)
T PTZ00344 53 KGHRLDLNELITLMDGLRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDA 132 (296)
T ss_pred cCeeCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHH
Confidence 446777777777766653 367999999999999999999988632 1122344332 235566777
Q ss_pred HHHHHhcCCEEEEeCCCCCCCCCC--CChHHHHHHHHHHHHHcCCCEEEeh
Q 008172 323 FEEIVEASDGIMVARGDLGVDIPL--EQIPTVQEIIIHVCRQLNKPVIVAS 371 (575)
Q Consensus 323 ldeI~~~sDgImIaRGDLg~e~~~--e~v~~~Qk~Ii~~c~~~gKPvivaT 371 (575)
+.+++..+|.+....-++..=.+. .....+ +...+...+.|.+.++.|
T Consensus 133 ~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~-~~~~~~l~~~g~~~VvVT 182 (296)
T PTZ00344 133 YRELIPYADVITPNQFEASLLSGVEVKDLSDA-LEAIDWFHEQGIPVVVIT 182 (296)
T ss_pred HHHHhhhCCEEeCCHHHHHHHhCCCCCCHHHH-HHHHHHHHHhCCCEEEEE
Confidence 788888899998887776443333 222222 334444445566655555
No 427
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=37.40 E-value=1.2e+02 Score=30.83 Aligned_cols=87 Identities=15% Similarity=0.043 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCCCEEEecCcCCh-----hhHHHHHHHHhccCCCCceEEee--ecCHHHHhcHHHHHhc--CCEEEEeCC
Q 008172 268 WDDIEFGIAEGVDFIAMSFVCDA-----DSVRHLKKYVSGKSSRSIKVLAK--IENLESLQKFEEIVEA--SDGIMVARG 338 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV~sa-----~dv~~ir~~l~~~~~~~i~IIaK--IEt~~av~nldeI~~~--sDgImIaRG 338 (575)
.+.++...+.|+|+|.++-+.+- -+...++++.+.. ++.+|+= |-++ +.+.++++. +||+|+|+.
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~---~ipvia~GGi~s~---~di~~~~~~g~~dgv~~g~a 231 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAV---KIPVIASGGAGKP---EHFYEAFTKGKADAALAASV 231 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhC---CCCEEEeCCCCCH---HHHHHHHHcCCcceeeEhHH
Confidence 45556778899999998766541 1233444433322 2344442 3332 233344443 799999988
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHcCCCE
Q 008172 339 DLGVDIPLEQIPTVQEIIIHVCRQLNKPV 367 (575)
Q Consensus 339 DLg~e~~~e~v~~~Qk~Ii~~c~~~gKPv 367 (575)
...-++++ +.+.+.|.++|.|+
T Consensus 232 ~~~~~~~~-------~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 232 FHYREITI-------GEVKEYLAERGIPV 253 (254)
T ss_pred HhCCCCCH-------HHHHHHHHHCCCcc
Confidence 76666653 35667777888775
No 428
>PRK06381 threonine synthase; Validated
Probab=37.29 E-value=1.4e+02 Score=31.30 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=54.8
Q ss_pred CchhhHHHHHHHHHHHhcCCcEEEEEcCChhHHHHHhccC--CCCcEEEEcCcH--HHHHHhcccCCcEEEEecCCCCHH
Q 008172 453 DRIAEQICNCAVDMANNLGVDAIFVYTKHGHMASLLSRNR--PNPPIFAFTNDD--STRMALNLQWGVIPVLVNLSDDME 528 (575)
Q Consensus 453 ~~~~~~ia~~av~~a~~~~AkaIVVfT~SG~TAr~VSr~R--P~~PIiAvT~~~--~~aR~L~L~~GV~Pvl~~~~~d~d 528 (575)
.+..+.-+...+..|.+.+++.||+-| +|+++.-+|.+- -..|.+.+.|.. ..-.++.-.+|..-+.++. +.+
T Consensus 44 GS~K~R~a~~~l~~a~~~g~~~lv~aS-sGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~~~ 120 (319)
T PRK06381 44 GTQKDRIAEAHVRRAMRLGYSGITVGT-CGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--KYE 120 (319)
T ss_pred cCcHHHHHHHHHHHHHHcCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--CHH
Confidence 345567777888888888888776655 899887666542 234555555432 2223344578888887764 345
Q ss_pred HHHHHHHHHHHHcC
Q 008172 529 TNIAKTIDLIKMKG 542 (575)
Q Consensus 529 ~~i~~al~~~~~~g 542 (575)
+.++.+.+.+.+.|
T Consensus 121 ~~~~~a~~~~~~~~ 134 (319)
T PRK06381 121 EAVERSRKFAKENG 134 (319)
T ss_pred HHHHHHHHHHHHcC
Confidence 55666666666554
No 429
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=37.16 E-value=4.8e+02 Score=27.46 Aligned_cols=154 Identities=14% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccC-----------------------------CCCceEEeeecCHH
Q 008172 268 WDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKS-----------------------------SRSIKVLAKIENLE 318 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~-----------------------------~~~i~IIaKIEt~~ 318 (575)
.+.++.|.+.+. .|..-.+.+.+.++.+-+...+.+ ...+.+...+.+-.
T Consensus 7 ~~~l~~A~~~~y-aV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLDH~~ 85 (284)
T PRK12737 7 KNMLKKAQAEGY-AVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLDHHE 85 (284)
T ss_pred HHHHHHHHHcCc-eEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_pred HHhcHHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCE--------EEehhhHHhhhcCCCCChhhHh
Q 008172 319 SLQKFEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPV--------IVASQLLESMVEYPTPTRAEVA 389 (575)
Q Consensus 319 av~nldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPv--------ivaTq~LeSM~~~p~PtrAEv~ 389 (575)
-++.+..-++. .+-||+....| |+++=-..-+++++.|++.|..| +.-...-........-+.+|+.
T Consensus 86 ~~e~i~~ai~~GftSVMiDgS~l----p~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~ 161 (284)
T PRK12737 86 DLDDIKKKVRAGIRSVMIDGSHL----SFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAA 161 (284)
T ss_pred CHHHHHHHHHcCCCeEEecCCCC----CHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHH
Q ss_pred hHHHHHHcccceEEeccCcCCCCC---HHHHHHHHHHHHHHH
Q 008172 390 DVSEAVRQYADALMLSGESAIGPF---GQKAVSVLQMASSRM 428 (575)
Q Consensus 390 Dv~nav~~G~D~vmLs~ETa~G~y---PveaV~~m~~I~~~a 428 (575)
+....- |+|++-.|--|+-|.| |---...+++|.+..
T Consensus 162 ~Fv~~T--gvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~ 201 (284)
T PRK12737 162 EFVERT--GIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKV 201 (284)
T ss_pred HHHHHh--CCCEEeeccCccccccCCCCcCCHHHHHHHHHHh
No 430
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=37.13 E-value=4.7e+02 Score=26.67 Aligned_cols=146 Identities=15% Similarity=0.088 Sum_probs=85.0
Q ss_pred CCccCHHHH-HHHHHcCCCEEEecCc------------CChhhHHHHHHHHhccCCCCceEEeeecCHH-HHhcHHHHHh
Q 008172 263 LSKKDWDDI-EFGIAEGVDFIAMSFV------------CDADSVRHLKKYVSGKSSRSIKVLAKIENLE-SLQKFEEIVE 328 (575)
Q Consensus 263 lsekD~~di-~~al~~gvd~I~~SfV------------~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~-av~nldeI~~ 328 (575)
++..++..+ +...+.|+|.|=+.|. ....+.+.++.+.... +..++.+...... -.+.++..++
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~--~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEAL--KQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhc--cCCEEEEEecCCccCHHHHHHHHH
Confidence 455665444 4556799999877532 1122333333333222 2345544421100 0233444444
Q ss_pred c-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHH-HHcccceEEecc
Q 008172 329 A-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEA-VRQYADALMLSG 406 (575)
Q Consensus 329 ~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~na-v~~G~D~vmLs~ 406 (575)
. .|.+-+. ++..++.. .+..++.+++.|..+.+.-. | ...-+.+++.+++.. ...|+|.+.|.
T Consensus 97 ~g~~~iri~-------~~~s~~~~-~~~~i~~ak~~G~~v~~~~~----~--~~~~~~~~~~~~~~~~~~~G~d~i~l~- 161 (263)
T cd07943 97 LGVDVVRVA-------THCTEADV-SEQHIGAARKLGMDVVGFLM----M--SHMASPEELAEQAKLMESYGADCVYVT- 161 (263)
T ss_pred cCCCEEEEE-------echhhHHH-HHHHHHHHHHCCCeEEEEEE----e--ccCCCHHHHHHHHHHHHHcCCCEEEEc-
Confidence 3 6777663 34444443 46688999999998876531 1 123456778777775 45699999995
Q ss_pred CcCCCCCHHHHHHHHHHHH
Q 008172 407 ESAIGPFGQKAVSVLQMAS 425 (575)
Q Consensus 407 ETa~G~yPveaV~~m~~I~ 425 (575)
+|.=.-+|.+.-+.++.+-
T Consensus 162 DT~G~~~P~~v~~lv~~l~ 180 (263)
T cd07943 162 DSAGAMLPDDVRERVRALR 180 (263)
T ss_pred CCCCCcCHHHHHHHHHHHH
Confidence 8888899988877766664
No 431
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.06 E-value=34 Score=36.32 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=31.2
Q ss_pred hcCCcEEEEEcCChhHHHHHhc----cCCCCcEEEEcCcH
Q 008172 469 NLGVDAIFVYTKHGHMASLLSR----NRPNPPIFAFTNDD 504 (575)
Q Consensus 469 ~~~AkaIVVfT~SG~TAr~VSr----~RP~~PIiAvT~~~ 504 (575)
+..++.+|+-|.||+||--+|. -.|.++.+.+||-.
T Consensus 182 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI~ 221 (306)
T PRK03372 182 SFGCDGVLVSTPTGSTAYAFSAGGPVVWPDLEALLVVPLN 221 (306)
T ss_pred EEecCEEEEeCCCchHHHHhhcCCcccCCCCCeEEEEecc
Confidence 4578999999999999999998 56788899999843
No 432
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.04 E-value=34 Score=35.73 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=31.1
Q ss_pred hcCCcEEEEEcCChhHHHHHhc----cCCCCcEEEEcCcH
Q 008172 469 NLGVDAIFVYTKHGHMASLLSR----NRPNPPIFAFTNDD 504 (575)
Q Consensus 469 ~~~AkaIVVfT~SG~TAr~VSr----~RP~~PIiAvT~~~ 504 (575)
+..++.+++-|.+|+||-.+|. ..|.++.+.+||=.
T Consensus 162 ~~~gDGvIvsTptGSTAY~lSaGGpIv~p~~~~~~vtPi~ 201 (277)
T PRK03708 162 EVRADGLIISTPTGSTAYAMSAGGPFVDPRLDAILIAPLC 201 (277)
T ss_pred EEecCEEEEeCCCchHHHHhhCCCcccCCCCCeEEEEecc
Confidence 5678999999999999999998 56788999998743
No 433
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=37.01 E-value=4.5e+02 Score=27.66 Aligned_cols=154 Identities=13% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccC-----------------------------CCCceEEeeecCHH
Q 008172 268 WDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKS-----------------------------SRSIKVLAKIENLE 318 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~-----------------------------~~~i~IIaKIEt~~ 318 (575)
.+.++.|.+.+.- |..-.|.+.+.++.+-+.-.+.+ ...+.+...+.+-.
T Consensus 7 k~iL~~A~~~~ya-V~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH~~ 85 (284)
T PRK12857 7 AELLKKAEKGGYA-VGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDHGT 85 (284)
T ss_pred HHHHHHHHHcCCe-EEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_pred HHhcHHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCE--------EEehhhHHhhhcCCCCChhhHh
Q 008172 319 SLQKFEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPV--------IVASQLLESMVEYPTPTRAEVA 389 (575)
Q Consensus 319 av~nldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPv--------ivaTq~LeSM~~~p~PtrAEv~ 389 (575)
-++.+.+-++. .+-||+. |-++|+++=...-+++++.|+..|.+| +.-..........-.-+..|+.
T Consensus 86 ~~e~i~~ai~~GftSVM~D----gS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~ 161 (284)
T PRK12857 86 DFEQVMKCIRNGFTSVMID----GSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEAR 161 (284)
T ss_pred CHHHHHHHHHcCCCeEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHH
Q ss_pred hHHHHHHcccceEEeccCcCCCCC---HHHHHHHHHHHHHHH
Q 008172 390 DVSEAVRQYADALMLSGESAIGPF---GQKAVSVLQMASSRM 428 (575)
Q Consensus 390 Dv~nav~~G~D~vmLs~ETa~G~y---PveaV~~m~~I~~~a 428 (575)
+..... |+|++-.|--|+-|.| |---...+..|.+..
T Consensus 162 ~Fv~~T--gvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~ 201 (284)
T PRK12857 162 RFVEET--GVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELV 201 (284)
T ss_pred HHHHHH--CCCEEeeccCccccccCCCCcCCHHHHHHHHHHh
No 434
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=36.83 E-value=6.9e+02 Score=28.54 Aligned_cols=158 Identities=11% Similarity=0.109 Sum_probs=85.5
Q ss_pred CCCccCHHHHHHH-HHcCCCEEEecCc-CChhhHHHHHHHHhccCC---CCceEEeeecC--HHHHhcHHHHHhc-----
Q 008172 262 TLSKKDWDDIEFG-IAEGVDFIAMSFV-CDADSVRHLKKYVSGKSS---RSIKVLAKIEN--LESLQKFEEIVEA----- 329 (575)
Q Consensus 262 ~lsekD~~di~~a-l~~gvd~I~~SfV-~sa~dv~~ir~~l~~~~~---~~i~IIaKIEt--~~av~nldeI~~~----- 329 (575)
.+|..|+..|... .+.|+|.|=+.|- .++++...++.+...... ......++|-. +---+.+|..++.
T Consensus 102 ~fs~eeKi~Ia~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a~~~a~ 181 (503)
T PLN03228 102 SLTPPQKLEIARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEALKYAK 181 (503)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHhhcccC
Confidence 3566776666554 5699999988664 455665555555432110 01112222210 0000123333332
Q ss_pred CCEEE--EeCCCCCCC----CCCCChHHHHHHHHHHHHHcCCC-EEEehhhHHhhhcCCCCChhhHhhHHH-HHHcccce
Q 008172 330 SDGIM--VARGDLGVD----IPLEQIPTVQEIIIHVCRQLNKP-VIVASQLLESMVEYPTPTRAEVADVSE-AVRQYADA 401 (575)
Q Consensus 330 sDgIm--IaRGDLg~e----~~~e~v~~~Qk~Ii~~c~~~gKP-vivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~G~D~ 401 (575)
.|.|. ++=.|+-.+ ...+++....+..++.++++|.. |.+..+ ...+-+..-+.+++. +...|+|.
T Consensus 182 ~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~E------Da~Rtd~efl~~~~~~a~~~Gad~ 255 (503)
T PLN03228 182 RPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCE------DGGRSDKEFLCKILGEAIKAGATS 255 (503)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccc------cccccCHHHHHHHHHHHHhcCCCE
Confidence 23343 333332211 12344555557888999999975 444221 222223333455553 66789999
Q ss_pred EEeccCcCCCCCHHHHHHHHHHHHH
Q 008172 402 LMLSGESAIGPFGQKAVSVLQMASS 426 (575)
Q Consensus 402 vmLs~ETa~G~yPveaV~~m~~I~~ 426 (575)
+.|. +|.=...|.+.-+.+..+.+
T Consensus 256 I~l~-DTvG~~tP~~v~~lV~~l~~ 279 (503)
T PLN03228 256 VGIA-DTVGINMPHEFGELVTYVKA 279 (503)
T ss_pred EEEe-cCCCCCCHHHHHHHHHHHHH
Confidence 9997 88888899998887776654
No 435
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=36.81 E-value=4.9e+02 Score=27.45 Aligned_cols=154 Identities=11% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccC-----------------------------CCCceEEeeecCHH
Q 008172 268 WDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKS-----------------------------SRSIKVLAKIENLE 318 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~-----------------------------~~~i~IIaKIEt~~ 318 (575)
.+.++.|.+.+. .|..-.+.+.+.++.+-+.-.+.+ ...+.|...+.+-.
T Consensus 7 k~il~~A~~~~y-aV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDHg~ 85 (284)
T PRK09195 7 KQMLNNAQRGGY-AVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDHHE 85 (284)
T ss_pred HHHHHHHHHcCc-eEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_pred HHhcHHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCE--------EEehhhHHhhhcCCCCChhhHh
Q 008172 319 SLQKFEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPV--------IVASQLLESMVEYPTPTRAEVA 389 (575)
Q Consensus 319 av~nldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPv--------ivaTq~LeSM~~~p~PtrAEv~ 389 (575)
-++.+.+-++. .+-||+. |-.+|+++=-..-+++++.|+..|.+| +.-......-.....-+..|..
T Consensus 86 ~~e~i~~Ai~~GftSVM~D----gS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~ 161 (284)
T PRK09195 86 KFDDIAQKVRSGVRSVMID----GSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAR 161 (284)
T ss_pred CHHHHHHHHHcCCCEEEeC----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHH
Q ss_pred hHHHHHHcccceEEeccCcCCCCC---HHHHHHHHHHHHHHH
Q 008172 390 DVSEAVRQYADALMLSGESAIGPF---GQKAVSVLQMASSRM 428 (575)
Q Consensus 390 Dv~nav~~G~D~vmLs~ETa~G~y---PveaV~~m~~I~~~a 428 (575)
+... .-|+|++-.|--|+-|.| |---...+++|.+..
T Consensus 162 ~Fv~--~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~ 201 (284)
T PRK09195 162 EFVE--ATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWV 201 (284)
T ss_pred HHHH--HHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHh
No 436
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=36.69 E-value=2.1e+02 Score=28.76 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEe
Q 008172 350 PTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALML 404 (575)
Q Consensus 350 ~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmL 404 (575)
..+...+++.++++|++|++-|- -+ ..+...++..|+|+|+-
T Consensus 217 ~~~~~~~i~~~~~~G~~v~vwtv----------n~---~~~~~~~~~~Gvdgi~T 258 (263)
T cd08567 217 TLVTKELVDEAHALGLKVVPWTV----------ND---PEDMARLIDLGVDGIIT 258 (263)
T ss_pred hhcCHHHHHHHHHCCCEEEEecC----------CC---HHHHHHHHHcCCCEEEc
Confidence 34567899999999999999872 11 23456778899999874
No 437
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=36.65 E-value=60 Score=33.61 Aligned_cols=63 Identities=19% Similarity=0.158 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEcCChhHHHHHhccCCCC-cEEEEcCcHHHHHHhcccCCcEEEEec
Q 008172 456 AEQICNCAVDMANNLGVDAIFVYTKHGHMASLLSRNRPNP-PIFAFTNDDSTRMALNLQWGVIPVLVN 522 (575)
Q Consensus 456 ~~~ia~~av~~a~~~~AkaIVVfT~SG~TAr~VSr~RP~~-PIiAvT~~~~~aR~L~L~~GV~Pvl~~ 522 (575)
.+.||..|.++-.. -+ .+|=.+|.|...++++=|.. ++-.+|++..++..|.-.-++.-++..
T Consensus 93 K~~IA~~Aa~~I~d--gd--~Ifld~GtT~~~la~~L~~~~~ltVvTnsl~ia~~l~~~~~~~v~llG 156 (269)
T PRK09802 93 KRSVAKAAVELIQP--GH--RVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTG 156 (269)
T ss_pred HHHHHHHHHhhCCC--CC--EEEECCchHHHHHHHhcCcCCCeEEEeCCHHHHHHHHhCCCCEEEEEC
Confidence 45677776655433 34 35557899999999998764 799999999999999877777766654
No 438
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=36.65 E-value=2.5e+02 Score=29.70 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=30.9
Q ss_pred HHHHHHHHhccCCCCceEEeeecCH-------HHHhcHHHHHhc-CCEEEEe
Q 008172 293 VRHLKKYVSGKSSRSIKVLAKIENL-------ESLQKFEEIVEA-SDGIMVA 336 (575)
Q Consensus 293 v~~ir~~l~~~~~~~i~IIaKIEt~-------~av~nldeI~~~-sDgImIa 336 (575)
+..++.....+...+..|+|..|.. ++++....-.+. +|+|||-
T Consensus 135 ~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~ 186 (290)
T TIGR02321 135 QGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIH 186 (290)
T ss_pred HHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEEec
Confidence 5556655554444678999999986 566666666666 8999993
No 439
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=36.60 E-value=5e+02 Score=26.80 Aligned_cols=87 Identities=24% Similarity=0.370 Sum_probs=55.4
Q ss_pred CceEEeee--cCHHHHhcHHHHHhc--CCEEEEeCCCCCCCCCC--------CChHHHHHHHHHHHHHc-CCCEEEehhh
Q 008172 307 SIKVLAKI--ENLESLQKFEEIVEA--SDGIMVARGDLGVDIPL--------EQIPTVQEIIIHVCRQL-NKPVIVASQL 373 (575)
Q Consensus 307 ~i~IIaKI--Et~~av~nldeI~~~--sDgImIaRGDLg~e~~~--------e~v~~~Qk~Ii~~c~~~-gKPvivaTq~ 373 (575)
...+++.| .+.+...+.-+.++. +|+|=+- ..+|. -.-+..-.+++++++++ ++|+++=
T Consensus 89 ~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN-----~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vK--- 160 (296)
T cd04740 89 GTPVIASIAGSTVEEFVEVAEKLADAGADAIELN-----ISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVK--- 160 (296)
T ss_pred CCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEE-----CCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEE---
Confidence 35688887 455555544444433 6888763 11221 12346667888888887 8999973
Q ss_pred HHhhhcCCCCChhhHhhHHH-HHHcccceEEeccCc
Q 008172 374 LESMVEYPTPTRAEVADVSE-AVRQYADALMLSGES 408 (575)
Q Consensus 374 LeSM~~~p~PtrAEv~Dv~n-av~~G~D~vmLs~ET 408 (575)
-.|+..|..+++. +...|+|++.+++=+
T Consensus 161 -------l~~~~~~~~~~a~~~~~~G~d~i~~~nt~ 189 (296)
T cd04740 161 -------LTPNVTDIVEIARAAEEAGADGLTLINTL 189 (296)
T ss_pred -------eCCCchhHHHHHHHHHHcCCCEEEEECCC
Confidence 1355557777776 556899999887443
No 440
>PRK12677 xylose isomerase; Provisional
Probab=36.34 E-value=5.4e+02 Score=28.16 Aligned_cols=146 Identities=12% Similarity=0.093 Sum_probs=82.6
Q ss_pred HHHHHHHHcCCCEEEecC---c-------CChhhHHHHHHHHhccCCCCceEEe-ee-------------------cCHH
Q 008172 269 DDIEFGIAEGVDFIAMSF---V-------CDADSVRHLKKYVSGKSSRSIKVLA-KI-------------------ENLE 318 (575)
Q Consensus 269 ~di~~al~~gvd~I~~Sf---V-------~sa~dv~~ir~~l~~~~~~~i~IIa-KI-------------------Et~~ 318 (575)
+.+..+.+.|+++|-+.. + .+...+.++++.+.+.| +.|.+ -. ....
T Consensus 35 E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~G---L~v~~v~~n~f~~p~~~~g~lts~d~~~R~~ 111 (384)
T PRK12677 35 EAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETG---LVVPMVTTNLFTHPVFKDGAFTSNDRDVRRY 111 (384)
T ss_pred HHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcC---CeeEEEecCCCCCccccCCcCCCCCHHHHHH
Confidence 556778899999998762 1 11124788999998776 23221 01 1133
Q ss_pred HHhcHHHHHhc-----CCEEEEeCCCCCCCCCC-CChHHHHH-------HHHHHHHHcCCCEEEehhhHHhhhc-----C
Q 008172 319 SLQKFEEIVEA-----SDGIMVARGDLGVDIPL-EQIPTVQE-------IIIHVCRQLNKPVIVASQLLESMVE-----Y 380 (575)
Q Consensus 319 av~nldeI~~~-----sDgImIaRGDLg~e~~~-e~v~~~Qk-------~Ii~~c~~~gKPvivaTq~LeSM~~-----~ 380 (575)
+++.+.+-++. ++.+.+-.|--|.+++. .+...+.+ .+.+.+.++|.-|-++ ||.+-. .
T Consensus 112 Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~la---IEpkp~ep~~~~ 188 (384)
T PRK12677 112 ALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFA---LEPKPNEPRGDI 188 (384)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEE---EccCCCCCCCCe
Confidence 45544443333 67777766755555543 23333333 4445555555445554 454432 3
Q ss_pred CCCChhhHhhHHHHHHccc-ceEE--eccCcCCCCCHHHHHHH
Q 008172 381 PTPTRAEVADVSEAVRQYA-DALM--LSGESAIGPFGQKAVSV 420 (575)
Q Consensus 381 p~PtrAEv~Dv~nav~~G~-D~vm--Ls~ETa~G~yPveaV~~ 420 (575)
-.||-.+...+.+.+..+. =+++ +......|..|.+++..
T Consensus 189 ~l~t~~~al~li~~lg~~~~vGv~lD~gH~~m~g~n~~~~i~~ 231 (384)
T PRK12677 189 LLPTVGHALAFIATLEHPEMVGLNPEVGHEQMAGLNFTHGIAQ 231 (384)
T ss_pred eeCCHHHHHHHHHHhCCCccEEEeeechHHHhcCCCHHHHHHH
Confidence 4577777777777665443 2244 45566677788777654
No 441
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=36.29 E-value=87 Score=31.98 Aligned_cols=63 Identities=22% Similarity=0.122 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEcCChhHHHHHhccCCCCcEEEEcCcHHHHHHhcccCCcEEEEec
Q 008172 456 AEQICNCAVDMANNLGVDAIFVYTKHGHMASLLSRNRPNPPIFAFTNDDSTRMALNLQWGVIPVLVN 522 (575)
Q Consensus 456 ~~~ia~~av~~a~~~~AkaIVVfT~SG~TAr~VSr~RP~~PIiAvT~~~~~aR~L~L~~GV~Pvl~~ 522 (575)
.+.||..|.++-.. -+ .+|=.+|.|+..++++-|..++-.+|++..+|+.|.=.-++.-+++.
T Consensus 80 K~~IA~~Aa~~I~~--g~--~Ifld~GsT~~~la~~L~~~~ltVvTnsl~ia~~l~~~~~~~v~l~G 142 (251)
T PRK13509 80 KVRIAKAASQLCNP--GE--SVVINCGSTAFLLGRELCGKPVQIITNYLPLANYLIDQEHDSVIIMG 142 (251)
T ss_pred HHHHHHHHHHhCCC--CC--EEEECCcHHHHHHHHHhCCCCeEEEeCCHHHHHHHHhCCCCEEEEEC
Confidence 46677777666533 33 46677999999999999877999999999999999766676666654
No 442
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=36.27 E-value=53 Score=37.01 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=40.6
Q ss_pred ceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHH
Q 008172 91 TKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQ 139 (575)
Q Consensus 91 tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~ 139 (575)
..+=+-+|.+-...+.++.|+++|+++.=+.-+||..+...++++.||+
T Consensus 214 l~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~ 262 (475)
T TIGR01303 214 LRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRA 262 (475)
T ss_pred ceehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 3344556776677899999999999999999999999888888888875
No 443
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=36.23 E-value=2.6e+02 Score=29.43 Aligned_cols=127 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCE----
Q 008172 293 VRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPV---- 367 (575)
Q Consensus 293 v~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPv---- 367 (575)
...++.+..+.+ -.+.|...+.+-.-++.+..-++. .+-+|+. |-++|+++=-..-+++++.|+++|.+|
T Consensus 64 ~~~~~~~a~~~~-~~VPV~lHLDHg~~~e~i~~ai~~GftSVM~D----gS~lp~eeNi~~Trevv~~Ah~~gv~VEaEl 138 (285)
T PRK07709 64 VAMVKALIEEMN-ITVPVAIHLDHGSSFEKCKEAIDAGFTSVMID----ASHHPFEENVETTKKVVEYAHARNVSVEAEL 138 (285)
T ss_pred HHHHHHHHHHcC-CCCcEEEECCCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEE
Q ss_pred ----EEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCC---HHHHHHHHHHHHHHH
Q 008172 368 ----IVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPF---GQKAVSVLQMASSRM 428 (575)
Q Consensus 368 ----ivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~y---PveaV~~m~~I~~~a 428 (575)
+.-...... ....-+.+|+.+..... |+|++-.|=-|+-|.| |---.+.+++|.++.
T Consensus 139 G~igg~ed~~~~~--~~~yT~peeA~~Fv~~T--gvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~ 202 (285)
T PRK07709 139 GTVGGQEDDVIAE--GVIYADPAECKHLVEAT--GIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFT 202 (285)
T ss_pred eccCCccCCcccc--cccCCCHHHHHHHHHHh--CCCEEEEeecccccCcCCCCccCHHHHHHHHHHH
No 444
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=36.23 E-value=2.5e+02 Score=29.52 Aligned_cols=93 Identities=18% Similarity=0.178 Sum_probs=49.6
Q ss_pred HHHHhc-CCEEEEeCCCCCCCCCC---CChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHcc
Q 008172 324 EEIVEA-SDGIMVARGDLGVDIPL---EQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQY 398 (575)
Q Consensus 324 deI~~~-sDgImIaRGDLg~e~~~---e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~G 398 (575)
+..++. +|||++. | -.-|.+. ++-..+.+..++.+ .-..||++-+ ...+-.|..+.+. |-..|
T Consensus 36 ~~li~~Gv~Gi~v~-G-stGE~~~Lt~eEr~~v~~~~~~~~-~grvpvi~Gv---------~~~~t~~ai~~a~~A~~~G 103 (309)
T cd00952 36 ERLIAAGVDGILTM-G-TFGECATLTWEEKQAFVATVVETV-AGRVPVFVGA---------TTLNTRDTIARTRALLDLG 103 (309)
T ss_pred HHHHHcCCCEEEEC-c-ccccchhCCHHHHHHHHHHHHHHh-CCCCCEEEEe---------ccCCHHHHHHHHHHHHHhC
Confidence 333344 8999984 1 1223322 33223333333333 2347888643 1223345444444 66779
Q ss_pred cceEEeccCcCCCCCHHHHHHHHHHHHHHH
Q 008172 399 ADALMLSGESAIGPFGQKAVSVLQMASSRM 428 (575)
Q Consensus 399 ~D~vmLs~ETa~G~yPveaV~~m~~I~~~a 428 (575)
+|++|+..=--...-+-+.++..+.|++.+
T Consensus 104 ad~vlv~~P~y~~~~~~~l~~yf~~va~a~ 133 (309)
T cd00952 104 ADGTMLGRPMWLPLDVDTAVQFYRDVAEAV 133 (309)
T ss_pred CCEEEECCCcCCCCCHHHHHHHHHHHHHhC
Confidence 999999865322222456677777777665
No 445
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.14 E-value=62 Score=34.06 Aligned_cols=63 Identities=27% Similarity=0.325 Sum_probs=49.0
Q ss_pred cCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHH--hcHHHHHhc-CCEEEEeC
Q 008172 266 KDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESL--QKFEEIVEA-SDGIMVAR 337 (575)
Q Consensus 266 kD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av--~nldeI~~~-sDgImIaR 337 (575)
.+.+++..+++.|+|.|.+=.. ++++++++.+.++.+ . +||---|+ +|+.++++. +|.|-++.
T Consensus 201 ~slee~~ea~~~gaDiImLDn~-s~e~l~~av~~~~~~----~----~leaSGgI~~~ni~~yA~tGVD~Is~ga 266 (281)
T PRK06543 201 DRLDQIEPVLAAGVDTIMLDNF-SLDDLREGVELVDGR----A----IVEASGNVNLNTVGAIASTGVDVISVGA 266 (281)
T ss_pred CCHHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHhCCC----e----EEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 4578888899999999999886 889999988877421 1 46655544 588888888 89999964
No 446
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=36.05 E-value=4.9e+02 Score=26.59 Aligned_cols=138 Identities=17% Similarity=0.209 Sum_probs=71.7
Q ss_pred HHHHHHHHHcC-CCEEEecCcCChhhHHHHHHHHhccCCCCceEEeee---cCHHHHhcHHHHHhc-----CCEEEEeCC
Q 008172 268 WDDIEFGIAEG-VDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKI---ENLESLQKFEEIVEA-----SDGIMVARG 338 (575)
Q Consensus 268 ~~di~~al~~g-vd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKI---Et~~av~nldeI~~~-----sDgImIaRG 338 (575)
.+.++.+++.| +|+|=+-.=...+.+.++.+..+.. ++++|+-- +..-..+++.++++. +|.+=++.
T Consensus 98 ~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~---~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~gaDivKia~- 173 (253)
T PRK02412 98 LALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEH---GVKVVLSYHDFEKTPPKEEIVERLRKMESLGADIVKIAV- 173 (253)
T ss_pred HHHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHc---CCEEEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEe-
Confidence 34456677777 7888777644555566665555433 24555544 112222334444333 46555541
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHH--cCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccce--EEeccCcCCCCCH
Q 008172 339 DLGVDIPLEQIPTVQEIIIHVCRQ--LNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADA--LMLSGESAIGPFG 414 (575)
Q Consensus 339 DLg~e~~~e~v~~~Qk~Ii~~c~~--~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~--vmLs~ETa~G~yP 414 (575)
..-...++..+.+- ...++. .++|+|.- +|=....+||- .+.++ |.-. -.+..++|-|.++
T Consensus 174 ---~a~~~~D~~~ll~~-~~~~~~~~~~~P~i~~-----~MG~~G~~SRi-----l~~~~-GS~~ty~~~~~~sAPGQ~~ 238 (253)
T PRK02412 174 ---MPQSEQDVLTLLNA-TREMKELYADQPLITM-----SMGKLGRISRL-----AGEVF-GSSWTFASLDKASAPGQIS 238 (253)
T ss_pred ---cCCCHHHHHHHHHH-HHHHHhcCCCCCEEEE-----eCCCCchHHHc-----chhhh-CCcceecCCCCCCCCCCCC
Confidence 00112334444332 223333 57898852 46666667775 44433 2211 2256789999999
Q ss_pred HHHHHHHHHH
Q 008172 415 QKAVSVLQMA 424 (575)
Q Consensus 415 veaV~~m~~I 424 (575)
++.++.+...
T Consensus 239 ~~el~~i~~~ 248 (253)
T PRK02412 239 VEDLRRILEI 248 (253)
T ss_pred HHHHHHHHHH
Confidence 8866654433
No 447
>PF04009 DUF356: Protein of unknown function (DUF356); InterPro: IPR007154 Members of this family are around 120 amino acids in length and are found in some archaebacteria. The function of this family is unknown. However it contains a conserved motif IHPPAH that may be involved in its function.
Probab=36.04 E-value=38 Score=30.50 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=46.9
Q ss_pred chhhHHHHHHHHH--HHhcCCcE-EEEEcCChhHHHHHhccCCCCcEEEEcCcHHHHHHhcccCCcEEEE
Q 008172 454 RIAEQICNCAVDM--ANNLGVDA-IFVYTKHGHMASLLSRNRPNPPIFAFTNDDSTRMALNLQWGVIPVL 520 (575)
Q Consensus 454 ~~~~~ia~~av~~--a~~~~Aka-IVVfT~SG~TAr~VSr~RP~~PIiAvT~~~~~aR~L~L~~GV~Pvl 520 (575)
..+|.+....+.. =.++.+.+ .-+-...|.+..++-+-+|.+.|+.+++...+++.|.=.||-+|.+
T Consensus 37 ~~AD~i~~~ilg~~lr~~~k~A~lv~v~~~~~~aI~~lrkIHPPAHIiVis~~~~~y~eL~~~~~~~p~l 106 (107)
T PF04009_consen 37 EYADWILEKILGEPLRKKCKAAALVKVEEDATKAIDRLRKIHPPAHIIVISPRHDVYEELLEMFGKLPEL 106 (107)
T ss_pred HHHHHHHHHHhCCccccccchheEEEecCCchhHHHHHhhcCCCceEEEECCCchHHHHHHHHhhhCccC
Confidence 3445555444332 12233333 3344566778889999999999999999999999999899988754
No 448
>PRK08185 hypothetical protein; Provisional
Probab=35.95 E-value=2.2e+02 Score=29.98 Aligned_cols=115 Identities=9% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEeh
Q 008172 293 VRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVAS 371 (575)
Q Consensus 293 v~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaT 371 (575)
+..++.+..+.. +.+...+.+-.-++.+..-++. .+.||+.--+| |.++-...-+++++.|+.+|.+|=.--
T Consensus 57 ~~~~~~~a~~~~---vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l----~~eeNi~~t~~vv~~a~~~gv~vE~El 129 (283)
T PRK08185 57 FAYVRERAKRSP---VPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSLL----PYEENVALTKEVVELAHKVGVSVEGEL 129 (283)
T ss_pred HHHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCC----CHHHHHHHHHHHHHHHHHcCCeEEEEE
Q ss_pred hhHHhhhcCCCCChh-----hHhhHHHHHHc-ccceEEeccCcCCCCCH
Q 008172 372 QLLESMVEYPTPTRA-----EVADVSEAVRQ-YADALMLSGESAIGPFG 414 (575)
Q Consensus 372 q~LeSM~~~p~PtrA-----Ev~Dv~nav~~-G~D~vmLs~ETa~G~yP 414 (575)
-.+-.=.....-... ...+...++.. |+|++-.|--|+-|.||
T Consensus 130 G~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~ 178 (283)
T PRK08185 130 GTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYP 178 (283)
T ss_pred eeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcC
No 449
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.92 E-value=48 Score=29.66 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=23.0
Q ss_pred ecccccccccCCCCEEEEeCCeeEEEEEEE
Q 008172 195 ANYAGFSEGIEVGDELVIDGGMASFEVIEK 224 (575)
Q Consensus 195 v~~~~l~~~v~~Gd~IliDDG~i~l~V~~~ 224 (575)
++++. .+.+++||+|.+..+++..+|+++
T Consensus 26 l~d~k-rr~ik~GD~IiF~~~~l~v~V~~v 54 (111)
T COG4043 26 LADPK-RRQIKPGDKIIFNGDKLKVEVIDV 54 (111)
T ss_pred ecCHh-hcCCCCCCEEEEcCCeeEEEEEEE
Confidence 34443 467899999999999999988875
No 450
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=35.83 E-value=1.2e+02 Score=30.00 Aligned_cols=66 Identities=18% Similarity=0.294 Sum_probs=37.7
Q ss_pred CHHHHHHHHHcCCCEEEecCc--------CChhhHHHHHHHHhccCCCCceEEe--eecCHHHHhcHHHHHhc-CCEEEE
Q 008172 267 DWDDIEFGIAEGVDFIAMSFV--------CDADSVRHLKKYVSGKSSRSIKVLA--KIENLESLQKFEEIVEA-SDGIMV 335 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~SfV--------~sa~dv~~ir~~l~~~~~~~i~IIa--KIEt~~av~nldeI~~~-sDgImI 335 (575)
+.+++..+.+.|+|+|.+... ....+...++++.+.. ++.+++ -|-++ +|+.+.++. +||+++
T Consensus 132 t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~---~ipvia~GGI~~~---~~~~~~l~~GadgV~v 205 (219)
T cd04729 132 TLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL---GIPVIAEGRINSP---EQAAKALELGADAVVV 205 (219)
T ss_pred CHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc---CCCEEEeCCCCCH---HHHHHHHHCCCCEEEE
Confidence 345668889999999965321 1122333344333222 234443 34333 566676666 999999
Q ss_pred eCC
Q 008172 336 ARG 338 (575)
Q Consensus 336 aRG 338 (575)
|+.
T Consensus 206 Gsa 208 (219)
T cd04729 206 GSA 208 (219)
T ss_pred chH
Confidence 864
No 451
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.78 E-value=36 Score=36.10 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=30.7
Q ss_pred hcCCcEEEEEcCChhHHHHHhc----cCCCCcEEEEcCc
Q 008172 469 NLGVDAIFVYTKHGHMASLLSR----NRPNPPIFAFTND 503 (575)
Q Consensus 469 ~~~AkaIVVfT~SG~TAr~VSr----~RP~~PIiAvT~~ 503 (575)
+..++.+||-|.||+||-.+|. ..|.++.+.+||=
T Consensus 178 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI 216 (305)
T PRK02649 178 DIAADGVILSTPTGSTAYSLSAGGPVITPDVPVLQLTPI 216 (305)
T ss_pred EEecCeEEEeCCCcHHHHHhhCCCcccCCCCCeEEEEec
Confidence 4678999999999999999999 6678899999863
No 452
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.75 E-value=31 Score=35.94 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=30.9
Q ss_pred hcCCcEEEEEcCChhHHHHHhc----cCCCCcEEEEcCcH
Q 008172 469 NLGVDAIFVYTKHGHMASLLSR----NRPNPPIFAFTNDD 504 (575)
Q Consensus 469 ~~~AkaIVVfT~SG~TAr~VSr----~RP~~PIiAvT~~~ 504 (575)
+..++.+|+-|.||+||-.+|. ..|.++.+.+||=.
T Consensus 155 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~ltPI~ 194 (271)
T PRK01185 155 TFKADGVIVATPTGSTSYSSSAGGPILLPNLEGMVISYIA 194 (271)
T ss_pred EEEeeEEEEeCCCchHHHHhhCCCceeCCCCCeEEEEecc
Confidence 4679999999999999999998 56788999988743
No 453
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.55 E-value=34 Score=36.18 Aligned_cols=37 Identities=19% Similarity=0.125 Sum_probs=32.3
Q ss_pred hcCCcEEEEEcCChhHHHHHhc----cCCCCcEEEEcCcHH
Q 008172 469 NLGVDAIFVYTKHGHMASLLSR----NRPNPPIFAFTNDDS 505 (575)
Q Consensus 469 ~~~AkaIVVfT~SG~TAr~VSr----~RP~~PIiAvT~~~~ 505 (575)
+..++.+||-|.+|+||-.+|. ..|.++.+.+||=.-
T Consensus 176 ~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~vtPi~p 216 (305)
T PRK02645 176 QYQGDGLIVSTPTGSTAYTMAAGGPILHPGIDAIIVTPICP 216 (305)
T ss_pred EEecCEEEEecCCChhhhhhhcCCcccCCCCCeEEEEecCc
Confidence 4589999999999999999998 678899999998643
No 454
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=35.52 E-value=1.4e+02 Score=25.51 Aligned_cols=42 Identities=7% Similarity=0.229 Sum_probs=32.9
Q ss_pred cEEEeccc-ccccccCCCCEEEEeCCeeEEEEEEEECCeEEEEEe
Q 008172 191 FTVKANYA-GFSEGIEVGDELVIDGGMASFEVIEKVGNDLRCKCT 234 (575)
Q Consensus 191 ~~i~v~~~-~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~i~~~V~ 234 (575)
..+.+..+ ..+..+.+|+.|-+|. +.|.|.++.++.+...+.
T Consensus 20 ~~~~i~~~~~~~~~~~~g~SIavnG--vcLTV~~~~~~~f~~~l~ 62 (85)
T PF00677_consen 20 QRLRIEIPDKILSDLKIGGSIAVNG--VCLTVTDINEDWFEVDLI 62 (85)
T ss_dssp EEEEEEESTGGGGTG-TTSEEEETT--EEEEEEEEETTEEEEEEE
T ss_pred EEEEEEcCHHHHhhCccCcEEEECC--eeeEEEEecCCEEEEech
Confidence 34555555 6788999999999987 899999999998887654
No 455
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=35.50 E-value=73 Score=29.86 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=32.9
Q ss_pred CCEEE--EeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEeh
Q 008172 330 SDGIM--VARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVAS 371 (575)
Q Consensus 330 sDgIm--IaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaT 371 (575)
.|.|+ +|--|+....+.+++..-.+.+++.+++.|.++++.|
T Consensus 60 ~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~ 103 (183)
T cd04501 60 PAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILAS 103 (183)
T ss_pred CCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 56544 4455887777788888888999999999999988754
No 456
>TIGR00187 ribE riboflavin synthase, alpha subunit. The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.
Probab=35.42 E-value=70 Score=31.91 Aligned_cols=57 Identities=19% Similarity=0.338 Sum_probs=43.0
Q ss_pred cEEEeccc-ccccccCCCCEEEEeCCeeEEEEEEEECCeEEEEEec-------CeEecCCccccccc
Q 008172 191 FTVKANYA-GFSEGIEVGDELVIDGGMASFEVIEKVGNDLRCKCTD-------PGVFLPRAKLSFRR 249 (575)
Q Consensus 191 ~~i~v~~~-~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~i~~~V~~-------gG~l~s~K~vn~~r 249 (575)
..+.+..+ .+++.+++||.|-+|. +.|.|.++.++.+.+-+.. =|.+.....||+.|
T Consensus 22 ~~l~i~~~~~~~~~l~~G~SIAvnG--vCLTV~~i~~~~f~vdvipETl~~TtL~~l~~G~~VNLEr 86 (200)
T TIGR00187 22 ISLVVNLADHMLDDLELGDSIAVNG--VCLTVTEINKNHFSVDLSPETLKRTNLGDLKVGTWVNIER 86 (200)
T ss_pred EEEEEEeChHHhcccccCCEEEECc--EEEEEEEEcCCEEEEEEEHHHhhhcchhhCcCCCEEEEcc
Confidence 35666665 6788999999999987 8999999988887776542 36666666677754
No 457
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=35.01 E-value=5.4e+02 Score=26.80 Aligned_cols=98 Identities=17% Similarity=0.164 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCCEEEecC------cCChhhHHHH-HHHHhccCCCCceEEeeecC---HHHHhcHHHHHhc-CCEEEEe
Q 008172 268 WDDIEFGIAEGVDFIAMSF------VCDADSVRHL-KKYVSGKSSRSIKVLAKIEN---LESLQKFEEIVEA-SDGIMVA 336 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~Sf------V~sa~dv~~i-r~~l~~~~~~~i~IIaKIEt---~~av~nldeI~~~-sDgImIa 336 (575)
.+.++|.++.|+++|++.= .=|.++=.++ +....... .++.||+-+-. .++++......+. +|++|+.
T Consensus 24 ~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~-g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~ 102 (294)
T TIGR02313 24 RELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIA-GRIPFAPGTGALNHDETLELTKFAEEAGADAAMVI 102 (294)
T ss_pred HHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-CCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEc
Confidence 4567899999999987642 2233343343 33444443 45788888853 4566555555554 8999997
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHc-CCCEEEe
Q 008172 337 RGDLGVDIPLEQIPTVQEIIIHVCRQL-NKPVIVA 370 (575)
Q Consensus 337 RGDLg~e~~~e~v~~~Qk~Ii~~c~~~-gKPviva 370 (575)
+-..- + +.=..+....-..|.+. +.|+++-
T Consensus 103 pP~y~---~-~~~~~l~~~f~~ia~a~~~lpv~iY 133 (294)
T TIGR02313 103 VPYYN---K-PNQEALYDHFAEVADAVPDFPIIIY 133 (294)
T ss_pred CccCC---C-CCHHHHHHHHHHHHHhccCCCEEEE
Confidence 54321 1 11123333444455566 7898864
No 458
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.93 E-value=33 Score=36.15 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=32.0
Q ss_pred hcCCcEEEEEcCChhHHHHHhc----cCCCCcEEEEcCcHH
Q 008172 469 NLGVDAIFVYTKHGHMASLLSR----NRPNPPIFAFTNDDS 505 (575)
Q Consensus 469 ~~~AkaIVVfT~SG~TAr~VSr----~RP~~PIiAvT~~~~ 505 (575)
+..++.+++-|.+|+||-.+|. ..|.++.+.+||=.-
T Consensus 172 ~~~~DGlivsTptGSTAY~lSAGGpIv~p~~~~~~itPI~p 212 (295)
T PRK01231 172 SQRSDGLIVSTPTGSTAYALSGGGPIMHPKLDAIVLVPMFP 212 (295)
T ss_pred EEEcceEEEeCCCCchhhhhhcCCceecCCCCeEEEEecCC
Confidence 5688999999999999999998 678899999987543
No 459
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=34.87 E-value=41 Score=34.63 Aligned_cols=38 Identities=26% Similarity=0.226 Sum_probs=32.0
Q ss_pred HhcCCcEEEEEcCChhHHHHHhc----cCCCCcEEEEcCcHH
Q 008172 468 NNLGVDAIFVYTKHGHMASLLSR----NRPNPPIFAFTNDDS 505 (575)
Q Consensus 468 ~~~~AkaIVVfT~SG~TAr~VSr----~RP~~PIiAvT~~~~ 505 (575)
.+..++.++|-|.+|+||-.+|. ..|.++.+.+||-.-
T Consensus 130 ~~~~gDGlIVSTPtGSTAY~lSAGGPIv~P~~~~~~itPI~P 171 (246)
T PRK04761 130 EELVCDGVLVATPAGSTAYNLSAHGPILPLGSNLLALTPISP 171 (246)
T ss_pred EEEecCeEEEeCCcCHHHHHhhCCCcccCCCCCeEEEEeecc
Confidence 34578999999999999999998 567888999987543
No 460
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=34.68 E-value=6.3e+02 Score=27.47 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=68.7
Q ss_pred CCCCccCHHHH--------HHHHHcCCCEEEecC--------------cCChh------------hHHHHHHHHhccCCC
Q 008172 261 PTLSKKDWDDI--------EFGIAEGVDFIAMSF--------------VCDAD------------SVRHLKKYVSGKSSR 306 (575)
Q Consensus 261 p~lsekD~~di--------~~al~~gvd~I~~Sf--------------V~sa~------------dv~~ir~~l~~~~~~ 306 (575)
..||+.|++.+ ++|.+.|+|+|=+.. ++... -+.++.+.+++.-++
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~ 217 (382)
T cd02931 138 RELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGE 217 (382)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCC
Confidence 35788887766 477889999984432 32222 222333333332224
Q ss_pred CceEEeeecC------------------------HHHHhcHHHHHhc-CCEEEEeCCCCCC---CCCCCCh-HHHHHHHH
Q 008172 307 SIKVLAKIEN------------------------LESLQKFEEIVEA-SDGIMVARGDLGV---DIPLEQI-PTVQEIII 357 (575)
Q Consensus 307 ~i~IIaKIEt------------------------~~av~nldeI~~~-sDgImIaRGDLg~---e~~~e~v-~~~Qk~Ii 357 (575)
+..|-.||-- .++++-++.+.+. .|.+=|.-|.... ..+.... +..+...+
T Consensus 218 ~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~ 297 (382)
T cd02931 218 DFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYC 297 (382)
T ss_pred CceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHH
Confidence 5667777742 1222222333223 6999887665321 1111000 01112233
Q ss_pred HHHH-HcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcc-cceEEec
Q 008172 358 HVCR-QLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQY-ADALMLS 405 (575)
Q Consensus 358 ~~c~-~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G-~D~vmLs 405 (575)
+..+ ..+.||++...+- |++ +...++..| +|.|++.
T Consensus 298 ~~ik~~~~~pvi~~G~i~---------~~~---~~~~~l~~g~~D~V~~g 335 (382)
T cd02931 298 KALKEVVDVPVIMAGRME---------DPE---LASEAINEGIADMISLG 335 (382)
T ss_pred HHHHHHCCCCEEEeCCCC---------CHH---HHHHHHHcCCCCeeeec
Confidence 3333 3589999865542 222 335566666 9999996
No 461
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=34.53 E-value=1.3e+02 Score=31.66 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=48.0
Q ss_pred cCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHH--HhcHHHHHhc-CCEEEEe
Q 008172 266 KDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLES--LQKFEEIVEA-SDGIMVA 336 (575)
Q Consensus 266 kD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~a--v~nldeI~~~-sDgImIa 336 (575)
...+++..|++.|+|.|++-.- ++++++++.+.++.++ . +.+|---+ .+|+.++++. +|.|-+|
T Consensus 196 esle~~~eAl~agaDiImLDNm-~~e~~~~av~~l~~~~----~--~~lEaSGgIt~~ni~~yA~tGVD~IS~g 262 (280)
T COG0157 196 ESLEEAEEALEAGADIIMLDNM-SPEELKEAVKLLGLAG----R--ALLEASGGITLENIREYAETGVDVISVG 262 (280)
T ss_pred CCHHHHHHHHHcCCCEEEecCC-CHHHHHHHHHHhccCC----c--eEEEEeCCCCHHHHHHHhhcCCCEEEeC
Confidence 3478889999999999999885 7899999888863332 1 23333333 5688999988 9999885
No 462
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=34.41 E-value=79 Score=33.28 Aligned_cols=64 Identities=2% Similarity=0.049 Sum_probs=48.6
Q ss_pred CHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHH--hcHHHHHhc-CCEEEEe
Q 008172 267 DWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESL--QKFEEIVEA-SDGIMVA 336 (575)
Q Consensus 267 D~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av--~nldeI~~~-sDgImIa 336 (575)
..++.+.+++.|+|.|.+=. -++++++++.+.++..+ .++ ++|---|+ +|+.++++. +|.|.++
T Consensus 198 tleqa~ea~~agaDiI~LDn-~~~e~l~~av~~~~~~~-~~~----~leaSGGI~~~ni~~yA~tGvD~Is~g 264 (284)
T PRK06096 198 TPKEAIAALRAQPDVLQLDK-FSPQQATEIAQIAPSLA-PHC----TLSLAGGINLNTLKNYADCGIRLFITS 264 (284)
T ss_pred CHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHhhccC-CCe----EEEEECCCCHHHHHHHHhcCCCEEEEC
Confidence 67788889999999999976 48999999999886443 232 35554444 578888888 8999875
No 463
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=34.26 E-value=4.7e+02 Score=25.83 Aligned_cols=49 Identities=24% Similarity=0.358 Sum_probs=35.3
Q ss_pred HHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHH
Q 008172 271 IEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESL 320 (575)
Q Consensus 271 i~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av 320 (575)
++...+.|+|++.+.-.-..+-++.+.+...+.+ +.+.+++..=|+.+.
T Consensus 69 ~~~~~~~gad~vTvh~~~g~~~l~~~~~~~~~~~-~~v~~v~~lss~~~~ 117 (213)
T TIGR01740 69 YESKIKQGADMVNVHGVAGSESVEAAKEAASEGG-RGLLAVTELTSMGSL 117 (213)
T ss_pred HHHHHhcCCCEEEEcCCCCHHHHHHHHHHhhcCC-CeEEEEEcCCCCChh
Confidence 4446789999999988777666888888776554 556777777665544
No 464
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=34.25 E-value=2.2e+02 Score=30.46 Aligned_cols=60 Identities=25% Similarity=0.451 Sum_probs=42.3
Q ss_pred cCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEeh--h-hHHhhhcCC---CCChhhHhhHHH
Q 008172 329 ASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVAS--Q-LLESMVEYP---TPTRAEVADVSE 393 (575)
Q Consensus 329 ~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaT--q-~LeSM~~~p---~PtrAEv~Dv~n 393 (575)
..|.+.++ | ++|.--=+.+..++++.|++.|+.|++.| + +++....+| .|.+.|+....+
T Consensus 129 ~~d~Vvls-G----SlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~P~lIKPN~~EL~~~~g 194 (310)
T COG1105 129 SDDIVVLS-G----SLPPGVPPDAYAELIRILRQQGAKVILDTSGEALLAALEAKPWLIKPNREELEALFG 194 (310)
T ss_pred cCCEEEEe-C----CCCCCCCHHHHHHHHHHHHhcCCeEEEECChHHHHHHHccCCcEEecCHHHHHHHhC
Confidence 35665554 4 44655556788999999999999999986 2 334444455 788888876655
No 465
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=34.21 E-value=88 Score=35.23 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=40.4
Q ss_pred CceEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHH
Q 008172 90 KTKMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQ 139 (575)
Q Consensus 90 ~tkIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~ 139 (575)
+..+-+-+|+.-.+.+..+.|+++|++++-++-+||..+...+.++.+|+
T Consensus 216 ~l~V~aai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 216 RLRVGAAVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred CEEEEeecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHh
Confidence 45566677755567999999999999999999999998877777777764
No 466
>PRK06260 threonine synthase; Validated
Probab=34.14 E-value=2.5e+02 Score=30.58 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=48.9
Q ss_pred chhhHHHHHHHHHHHhcCCcEEEEEcCChhHHHHHhcc--CCCCcEEEEcCcHH--HHH-HhcccCCcEEEEecCCCCHH
Q 008172 454 RIAEQICNCAVDMANNLGVDAIFVYTKHGHMASLLSRN--RPNPPIFAFTNDDS--TRM-ALNLQWGVIPVLVNLSDDME 528 (575)
Q Consensus 454 ~~~~~ia~~av~~a~~~~AkaIVVfT~SG~TAr~VSr~--RP~~PIiAvT~~~~--~aR-~L~L~~GV~Pvl~~~~~d~d 528 (575)
+..+..+..++..|.+.+++.||+ ..||+++.-+|.| +...|.+.++|... ..+ ++...+|..-+.++. +.+
T Consensus 97 SfKdRga~~~v~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~ 173 (397)
T PRK06260 97 SFKDRGMTVGVTKALELGVKTVAC-ASTGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--NFD 173 (397)
T ss_pred CcHHHHHHHHHHHHHHcCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--cHH
Confidence 345555666677777777775555 4688888776665 34567777777531 111 122357877777753 344
Q ss_pred HHHHHHHHHHHH
Q 008172 529 TNIAKTIDLIKM 540 (575)
Q Consensus 529 ~~i~~al~~~~~ 540 (575)
+.++.+.+.+.+
T Consensus 174 ~~~~~a~~~~~~ 185 (397)
T PRK06260 174 DALDMVVELAKE 185 (397)
T ss_pred HHHHHHHHHHhh
Confidence 444545454444
No 467
>PRK11761 cysM cysteine synthase B; Provisional
Probab=34.09 E-value=4.8e+02 Score=27.20 Aligned_cols=122 Identities=7% Similarity=0.020 Sum_probs=68.1
Q ss_pred HHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhhh
Q 008172 355 IIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSRE 434 (575)
Q Consensus 355 ~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 434 (575)
-+...|+..|.|+.+.. |..+.-.-+...-..|++.+....+ +.| .++.+...++.++- .+
T Consensus 77 alA~~a~~~G~~~~i~~-----------p~~~~~~k~~~~~~~GA~v~~~~~~---~~~-~~~~~~a~~l~~~~-~~--- 137 (296)
T PRK11761 77 ALAMIAAIKGYRMKLIM-----------PENMSQERRAAMRAYGAELILVPKE---QGM-EGARDLALQMQAEG-EG--- 137 (296)
T ss_pred HHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHHcCCEEEEeCCC---CCh-HHHHHHHHHHHhcc-CC---
Confidence 45568999999999852 3333223344455689999888643 333 23333322222110 11
Q ss_pred hhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcC--CcEEEEEcCChhHH----HHHhccCCCCcEEEEcCcH
Q 008172 435 ENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLG--VDAIFVYTKHGHMA----SLLSRNRPNPPIFAFTNDD 504 (575)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--AkaIVVfT~SG~TA----r~VSr~RP~~PIiAvT~~~ 504 (575)
+ ...+... +..+..-...-+.|+.++++ .++||+.+-+|.+. +.+..++|...|+++-|..
T Consensus 138 ------~-~~~~~~n--~~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~ 204 (296)
T PRK11761 138 ------K-VLDQFAN--PDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEE 204 (296)
T ss_pred ------E-ecCCCCC--hhhHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 0 1111111 11111111223456666663 68999999999755 5666678999999998854
No 468
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=34.09 E-value=82 Score=28.57 Aligned_cols=42 Identities=12% Similarity=0.239 Sum_probs=32.5
Q ss_pred cccccccCCCCEEEEeCCeeEEEEEEEECCeEEEEEecCeEec
Q 008172 198 AGFSEGIEVGDELVIDGGMASFEVIEKVGNDLRCKCTDPGVFL 240 (575)
Q Consensus 198 ~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~i~~~V~~gG~l~ 240 (575)
.++...+++||+|.--.|..- +|.+++++.+..++..|-.+.
T Consensus 33 ~~m~~~Lk~GD~VvT~gGi~G-~V~~I~d~~v~leia~gv~i~ 74 (109)
T PRK05886 33 IDLHESLQPGDRVHTTSGLQA-TIVGITDDTVDLEIAPGVVTT 74 (109)
T ss_pred HHHHHhcCCCCEEEECCCeEE-EEEEEeCCEEEEEECCCeEEE
Confidence 467889999999999888665 577888888888876554543
No 469
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=33.99 E-value=5.5e+02 Score=28.08 Aligned_cols=111 Identities=12% Similarity=0.099 Sum_probs=58.2
Q ss_pred HHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeec--CHHHHhcHHHHHhc-CCEEEEeCCCCCCCC-
Q 008172 269 DDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIE--NLESLQKFEEIVEA-SDGIMVARGDLGVDI- 344 (575)
Q Consensus 269 ~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIE--t~~av~nldeI~~~-sDgImIaRGDLg~e~- 344 (575)
+..+...+.+++.+ .++-+.++-+.+...+ +.+|+- .....+-.+.+++. +|.|.+--=--..+.
T Consensus 103 ~aa~~~~e~~~~~~------~p~l~~~ii~~vr~a~-----VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~ 171 (369)
T TIGR01304 103 AATRLLQELHAAPL------KPELLGERIAEVRDSG-----VITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHV 171 (369)
T ss_pred HHHHHHHHcCCCcc------ChHHHHHHHHHHHhcc-----eEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhcc
Confidence 44455556677763 4555555544454332 445543 23344444555555 899987400000000
Q ss_pred CCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccC
Q 008172 345 PLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGE 407 (575)
Q Consensus 345 ~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~E 407 (575)
.-..-+ ..+.+.+++.+.|||. .. ..|. .|...++..|+|+|| -++
T Consensus 172 sg~~~p---~~l~~~i~~~~IPVI~-G~---------V~t~---e~A~~~~~aGaDgV~-~G~ 217 (369)
T TIGR01304 172 STSGEP---LNLKEFIGELDVPVIA-GG---------VNDY---TTALHLMRTGAAGVI-VGP 217 (369)
T ss_pred CCCCCH---HHHHHHHHHCCCCEEE-eC---------CCCH---HHHHHHHHcCCCEEE-ECC
Confidence 001112 2566667778999986 22 2333 344566778999999 444
No 470
>PF01274 Malate_synthase: Malate synthase; InterPro: IPR001465 Malate synthase (2.3.3.9 from EC) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. Malate synthase has a TIM beta/alpha-barrel fold [].; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle; PDB: 1Y8B_A 1P7T_A 2JQX_A 1D8C_A 3CUX_A 1N8W_A 2GQ3_A 1N8I_A 3CV2_A 3CUZ_A ....
Probab=33.90 E-value=78 Score=36.19 Aligned_cols=118 Identities=15% Similarity=0.213 Sum_probs=72.2
Q ss_pred CCCEEEecCcCChhhHHHHHHHHh-------ccCCCCceEEeeecCHHHHhcHHHHHhc----C----------------
Q 008172 278 GVDFIAMSFVCDADSVRHLKKYVS-------GKSSRSIKVLAKIENLESLQKFEEIVEA----S---------------- 330 (575)
Q Consensus 278 gvd~I~~SfV~sa~dv~~ir~~l~-------~~~~~~i~IIaKIEt~~av~nldeI~~~----s---------------- 330 (575)
+-=|+.+|-++++++++--.+.+. -. ...+++-..||+..|.=+++||+-+ +
T Consensus 203 ~gpYfylPKme~~~EA~lwn~vF~~~E~~Lglp-~gTIKatvLiEt~~Aafem~Eilyelr~h~~gLN~GrwDYifS~Ik 281 (526)
T PF01274_consen 203 SGPYFYLPKMESHEEARLWNDVFSFAEDLLGLP-RGTIKATVLIETIPAAFEMEEILYELRDHSVGLNCGRWDYIFSEIK 281 (526)
T ss_dssp SSEEEEE-S-SSHHHHHHHHHHHHHHHHHHTSS-TTSEEEEEEE-SHHHHTTHHHHHHHTTTTEEEEEE-HHHHHHHHHH
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCC-CCceEEEEeeehhHHHhhHHHHHHHHHhheeeeecCchhhhHHHHH
Confidence 445778999999999987655443 21 1369999999999999999999877 2
Q ss_pred ------CEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCCh-------hhHhhH----HH
Q 008172 331 ------DGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTR-------AEVADV----SE 393 (575)
Q Consensus 331 ------DgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~Ptr-------AEv~Dv----~n 393 (575)
|.++=.|..++++. +=+..+.+..++.|++.|...+. -|.- -.|.+ ..+..| ..
T Consensus 282 ~~~~~~~~vlPdR~~v~m~~--pfm~aY~~llv~tch~Rga~a~g------Gmaa-~ip~~~d~~~~~~a~~~v~~dK~r 352 (526)
T PF01274_consen 282 TFRNRPDFVLPDRKQVTMTQ--PFMRAYEDLLVRTCHRRGAHAMG------GMAA-FIPIGKDPWANPDAMAKVRADKER 352 (526)
T ss_dssp HTCCGCCBB---GGGGGCGS--HHHHHHHHHHHHHHHHTT-HHHT------TCTT-TSEEEEEEHHBTTCHHHHHHHTHH
T ss_pred HhhhCCCccccccccccccC--HHHHHHHHHHHHHHhhcCCcccc------CCcc-ccCCCCChhhhHHHHHHHHHHHHH
Confidence 23333444443333 34667888999999999965432 1111 12322 122222 23
Q ss_pred HHHcccceEEec
Q 008172 394 AVRQYADALMLS 405 (575)
Q Consensus 394 av~~G~D~vmLs 405 (575)
-+.+|+||-+..
T Consensus 353 E~~~G~dg~WVa 364 (526)
T PF01274_consen 353 EAKAGFDGAWVA 364 (526)
T ss_dssp HHHTT-SEEEES
T ss_pred HHhcCCCccccc
Confidence 678999998874
No 471
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=33.84 E-value=36 Score=38.61 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=31.1
Q ss_pred hcCCcEEEEEcCChhHHHHHhc----cCCCCcEEEEcCc
Q 008172 469 NLGVDAIFVYTKHGHMASLLSR----NRPNPPIFAFTND 503 (575)
Q Consensus 469 ~~~AkaIVVfT~SG~TAr~VSr----~RP~~PIiAvT~~ 503 (575)
...++.+||-|.||+||-.+|. ..|.++.+.+||=
T Consensus 377 ~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~l~~ivlTPI 415 (508)
T PLN02935 377 CVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPI 415 (508)
T ss_pred EEECCcEEEecCccHHHHHHhcCCcccCCCCCeEEEEec
Confidence 4678999999999999999998 6789999999874
No 472
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.84 E-value=41 Score=35.52 Aligned_cols=36 Identities=19% Similarity=0.143 Sum_probs=31.2
Q ss_pred hcCCcEEEEEcCChhHHHHHhc----cCCCCcEEEEcCcH
Q 008172 469 NLGVDAIFVYTKHGHMASLLSR----NRPNPPIFAFTNDD 504 (575)
Q Consensus 469 ~~~AkaIVVfT~SG~TAr~VSr----~RP~~PIiAvT~~~ 504 (575)
+..++.+||-|.+|+||-.+|. ..|.++.+.+||=.
T Consensus 178 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI~ 217 (296)
T PRK04539 178 TQRSDGLIVSTPTGSTAYSLAAGGPIMQAGLHAFTLVPIC 217 (296)
T ss_pred EEecCeEEEECCCcHHHHHhhCCCceeCCCCCeEEEEecC
Confidence 4578999999999999999998 67888999998643
No 473
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=33.79 E-value=5.6e+02 Score=28.36 Aligned_cols=127 Identities=12% Similarity=0.187 Sum_probs=77.0
Q ss_pred HcCCCEEEecCcCC-hh-------hHHHHHHHHhccCCCCceEEe-e---ecCHHHHhcHHHHHhcCCE--EEEeCCCCC
Q 008172 276 AEGVDFIAMSFVCD-AD-------SVRHLKKYVSGKSSRSIKVLA-K---IENLESLQKFEEIVEASDG--IMVARGDLG 341 (575)
Q Consensus 276 ~~gvd~I~~SfV~s-a~-------dv~~ir~~l~~~~~~~i~IIa-K---IEt~~av~nldeI~~~sDg--ImIaRGDLg 341 (575)
++|+|+|++-+..+ ++ +..++.+.+.+.- +-..+|. - -+++ +-+++.++++.| .+|.-..+
T Consensus 151 ~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av-~vPLIL~gsg~~~kD~---eVLeaaLe~~~G~kpLL~SAt~- 225 (389)
T TIGR00381 151 EFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAV-DVPIVIGGSGNPEKDP---LVLEKAAEVAEGERCLLASANL- 225 (389)
T ss_pred HhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhC-CCCEEEeCCCCCcCCH---HHHHHHHHHhCCCCcEEEecCc-
Confidence 68999999999876 44 4544444342221 1223332 1 2233 346777888766 66653322
Q ss_pred CCCCCCChHHHHHHHHHHHHHcCCCEEEeh----hhHHhhhcCCCCChhhHhhHHHHHHcccc--eEEeccCc-CCCCCH
Q 008172 342 VDIPLEQIPTVQEIIIHVCRQLNKPVIVAS----QLLESMVEYPTPTRAEVADVSEAVRQYAD--ALMLSGES-AIGPFG 414 (575)
Q Consensus 342 ~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaT----q~LeSM~~~p~PtrAEv~Dv~nav~~G~D--~vmLs~ET-a~G~yP 414 (575)
++ -.+++.+.|.++|.|+++-+ .++-++... +...|.. =++|.-=| +.|.=.
T Consensus 226 -----e~---Ny~~ia~lAk~yg~~Vvv~s~~Din~ak~Ln~k-------------L~~~Gv~~eDIVlDP~t~alG~Gi 284 (389)
T TIGR00381 226 -----DL---DYEKIANAAKKYGHVVLSWTIMDINMQKTLNRY-------------LLKRGLMPRDIVMDPTTCALGYGI 284 (389)
T ss_pred -----hh---hHHHHHHHHHHhCCeEEEEcCCcHHHHHHHHHH-------------HHHcCCCHHHEEEcCCCccccCCH
Confidence 21 46789999999999999976 222222111 4456777 67776555 345556
Q ss_pred HHHHHHHHHHHHHH
Q 008172 415 QKAVSVLQMASSRM 428 (575)
Q Consensus 415 veaV~~m~~I~~~a 428 (575)
..++..|.+|-+.|
T Consensus 285 eya~s~~erIRraA 298 (389)
T TIGR00381 285 EFSITNMERIRLSG 298 (389)
T ss_pred HHHHHHHHHHHHHH
Confidence 67888887776555
No 474
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=33.66 E-value=2e+02 Score=27.70 Aligned_cols=44 Identities=20% Similarity=0.213 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhcCCc
Q 008172 104 MEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEKLFC 147 (575)
Q Consensus 104 ~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~~~~ 147 (575)
.+.+++++++|++.+.+.....+..++.+.++.+++.....+.+
T Consensus 24 ~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (212)
T PRK00043 24 LEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVP 67 (212)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCe
Confidence 46789999999999999988877777777777777665554433
No 475
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=33.58 E-value=78 Score=28.11 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=32.0
Q ss_pred ccccccccCCCCEEEEeCCeeEEEEEEEECCeEEEEEecCeEec
Q 008172 197 YAGFSEGIEVGDELVIDGGMASFEVIEKVGNDLRCKCTDPGVFL 240 (575)
Q Consensus 197 ~~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~i~~~V~~gG~l~ 240 (575)
+.++.+++++||+|.--.|.+ =+|+++.++++..++-.+..+.
T Consensus 37 ~~~ml~sL~kGD~VvT~gGi~-G~V~~v~d~~v~I~l~~~~~i~ 79 (97)
T COG1862 37 HQELLNSLKKGDEVVTIGGIV-GTVTKVGDDTVEIELGDGTKIK 79 (97)
T ss_pred HHHHHHhccCCCEEEEcCCeE-EEEEEEecCcEEEEECCCeEEE
Confidence 456788999999999988754 5888998888666555444443
No 476
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=33.52 E-value=3.2e+02 Score=29.91 Aligned_cols=126 Identities=13% Similarity=0.169 Sum_probs=70.6
Q ss_pred HHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhhh
Q 008172 355 IIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSRE 434 (575)
Q Consensus 355 ~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 434 (575)
-+...|+..|.|+.+. .|..+.-..+.+.-..|++.+...+ ..-++++...+..++- .|+.-
T Consensus 130 alA~~a~~~G~~~~Iv-----------vp~~~~~~k~~~i~~~GA~Vi~v~~------~~~~~~~~a~~~~~~~-g~~~v 191 (399)
T PRK08206 130 GVAWAAQQLGQKAVIY-----------MPKGSSEERVDAIRALGAECIITDG------NYDDSVRLAAQEAQEN-GWVVV 191 (399)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCC------CHHHHHHHHHHHHHHc-CCEEe
Confidence 4567899999999985 3544444556677789999666542 2445666555543321 11100
Q ss_pred hhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcC-----CcEEEEEcCChhHHHHHhcc-----CC-CCcEEEEcCc
Q 008172 435 ENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLG-----VDAIFVYTKHGHMASLLSRN-----RP-NPPIFAFTND 503 (575)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~-----AkaIVVfT~SG~TAr~VSr~-----RP-~~PIiAvT~~ 503 (575)
. .. ..++. ...+.....-...-+.|+.++++ .+.||+.+-+|.++.-++++ ++ ...|++|-|.
T Consensus 192 ~----~~-~~~~~-~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~ 265 (399)
T PRK08206 192 Q----DT-AWEGY-EEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPD 265 (399)
T ss_pred c----Cc-cccCc-ccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCC
Confidence 0 00 00011 00111222333444556666653 58999999999887766543 23 5669999774
Q ss_pred H
Q 008172 504 D 504 (575)
Q Consensus 504 ~ 504 (575)
.
T Consensus 266 g 266 (399)
T PRK08206 266 Q 266 (399)
T ss_pred C
Confidence 4
No 477
>PRK07476 eutB threonine dehydratase; Provisional
Probab=33.28 E-value=5.6e+02 Score=26.93 Aligned_cols=118 Identities=12% Similarity=0.104 Sum_probs=69.8
Q ss_pred HHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHHHHHHHhhhhhh
Q 008172 355 IIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQMASSRMELWSRE 434 (575)
Q Consensus 355 ~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 434 (575)
-+...|++.|.|+.+. .|..+.-.-+...-..|++.+... + ..-++++...+++++- .++
T Consensus 81 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~V~~~~-~-----~~~~~~~~a~~~~~~~-g~~-- 140 (322)
T PRK07476 81 ALAYAARALGIRATIC-----------MSRLVPANKVDAIRALGAEVRIVG-R-----SQDDAQAEVERLVREE-GLT-- 140 (322)
T ss_pred HHHHHHHHhCCCEEEE-----------eCCCCCHHHHHHHHHcCCEEEEEC-C-----CHHHHHHHHHHHHHhc-CCE--
Confidence 5567899999999884 233333334555667999976553 2 2345655554443221 110
Q ss_pred hhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhc-CCcEEEEEcCChhHHHHHh----ccCCCCcEEEEcCc
Q 008172 435 ENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNL-GVDAIFVYTKHGHMASLLS----RNRPNPPIFAFTND 503 (575)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~-~AkaIVVfT~SG~TAr~VS----r~RP~~PIiAvT~~ 503 (575)
+..+... +. ..+.....+.|+.+++ +.++||+.+-+|.++--++ .+.|...|+++-+.
T Consensus 141 --------~~~~~~n--~~-~~~g~~t~~~Ei~~Q~~~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~ 203 (322)
T PRK07476 141 --------MVPPFDD--PR-IIAGQGTIGLEILEALPDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSME 203 (322)
T ss_pred --------EeCCCCC--cc-eeechhHHHHHHHHhCcCCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 1112111 11 1222344556676666 4688999999998765444 46799999999875
No 478
>PRK08197 threonine synthase; Validated
Probab=33.26 E-value=3e+02 Score=29.92 Aligned_cols=86 Identities=14% Similarity=0.044 Sum_probs=49.7
Q ss_pred chhhHHHHHHHHHHHhcCCcEEEEEcCChhHHHHHhccC--CCCcEEEEcCc--HHHHHHhcccCCcEEEEecCCCCHHH
Q 008172 454 RIAEQICNCAVDMANNLGVDAIFVYTKHGHMASLLSRNR--PNPPIFAFTND--DSTRMALNLQWGVIPVLVNLSDDMET 529 (575)
Q Consensus 454 ~~~~~ia~~av~~a~~~~AkaIVVfT~SG~TAr~VSr~R--P~~PIiAvT~~--~~~aR~L~L~~GV~Pvl~~~~~d~d~ 529 (575)
+..+..+..++..|.+.+.+.|++.| ||+++.-+|.|- -..|.+.+.|. ...-+.+...+|..-+.++. +.++
T Consensus 109 SfKdRga~~~i~~a~~~g~~~vv~aS-sGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~--~~~~ 185 (394)
T PRK08197 109 SFKARGLAVGVSRAKELGVKHLAMPT-NGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLVDG--LISD 185 (394)
T ss_pred CcHHhHHHHHHHHHHHcCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHH
Confidence 44566667777777778888777766 888888776652 23455555542 22333444577777777653 2333
Q ss_pred HHHHHHHHHHHcC
Q 008172 530 NIAKTIDLIKMKG 542 (575)
Q Consensus 530 ~i~~al~~~~~~g 542 (575)
..+.+.+.+.+.|
T Consensus 186 ~~~~a~~~~~~~g 198 (394)
T PRK08197 186 AGKIVAEAVAEYG 198 (394)
T ss_pred HHHHHHHHHHhcC
Confidence 3344444444433
No 479
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=33.24 E-value=1.1e+02 Score=32.50 Aligned_cols=70 Identities=11% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEe-------cCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc--CCEEEEeCC
Q 008172 268 WDDIEFGIAEGVDFIAM-------SFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA--SDGIMVARG 338 (575)
Q Consensus 268 ~~di~~al~~gvd~I~~-------SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~--sDgImIaRG 338 (575)
.+.++.+.+.|+|+|.+ .|-..+.+-..++++-+..+ -.+..---|.|+ +...++++. +||||||||
T Consensus 151 ~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~-iPVi~nGdI~t~---~da~~~l~~~g~DgVmiGRg 226 (312)
T PRK10550 151 FEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLT-IPVIANGEIWDW---QSAQQCMAITGCDAVMIGRG 226 (312)
T ss_pred HHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcC-CcEEEeCCcCCH---HHHHHHHhccCCCEEEEcHH
Q ss_pred CCC
Q 008172 339 DLG 341 (575)
Q Consensus 339 DLg 341 (575)
=|+
T Consensus 227 ~l~ 229 (312)
T PRK10550 227 ALN 229 (312)
T ss_pred hHh
No 480
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=33.22 E-value=69 Score=32.80 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEcCChhHHHHHhccCCC-CcEEEEcCcHHHHHHhcccCCcEEEEec
Q 008172 456 AEQICNCAVDMANNLGVDAIFVYTKHGHMASLLSRNRPN-PPIFAFTNDDSTRMALNLQWGVIPVLVN 522 (575)
Q Consensus 456 ~~~ia~~av~~a~~~~AkaIVVfT~SG~TAr~VSr~RP~-~PIiAvT~~~~~aR~L~L~~GV~Pvl~~ 522 (575)
.+.||..|.+.-.. -+ .+|=.+|.|...++++=|. .++-.+|++..++..|.-..++.-++..
T Consensus 78 K~~IA~~Aa~~I~~--g~--tIflD~GtT~~~la~~L~~~~~ltVvTNsl~ia~~l~~~~~~~villG 141 (252)
T PRK10906 78 KERIARKVASQIPN--GA--TLFIDIGTTPEAVAHALLNHSNLRIVTNNLNVANTLMAKEDFRIILAG 141 (252)
T ss_pred HHHHHHHHHhhCCC--CC--EEEEcCcHHHHHHHHHhcCCCCcEEEECcHHHHHHHhhCCCCEEEEEC
Confidence 46677777655543 33 3556789999999998876 4799999999999999877777766664
No 481
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=32.94 E-value=40 Score=35.47 Aligned_cols=36 Identities=28% Similarity=0.280 Sum_probs=31.2
Q ss_pred hcCCcEEEEEcCChhHHHHHhc----cCCCCcEEEEcCcH
Q 008172 469 NLGVDAIFVYTKHGHMASLLSR----NRPNPPIFAFTNDD 504 (575)
Q Consensus 469 ~~~AkaIVVfT~SG~TAr~VSr----~RP~~PIiAvT~~~ 504 (575)
+..++.+||-|.+|+||-.+|. ..|.++.+.+||-.
T Consensus 173 ~~~gDGlIVsTPtGSTAYslSaGGPIv~p~~~~~~ltPI~ 212 (291)
T PRK02155 173 NQRSDGLIVATPTGSTAYALSAGGPILHPQLPGWVLVPIA 212 (291)
T ss_pred EEecCeEEEECCCchhhhhhhcCCcccCCCCCeEEEEecC
Confidence 5678999999999999999998 56788999988754
No 482
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=32.88 E-value=1.6e+02 Score=31.61 Aligned_cols=67 Identities=16% Similarity=0.275 Sum_probs=45.9
Q ss_pred hHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 292 SVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 292 dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
.+..+++.+.+.+ .++.|-+-.+... -+|++++++-.|.|+.+-.+ +.....+-+.|.++|+|.+.+
T Consensus 81 Ka~aa~~~l~~in-p~v~i~~~~~~~~-~~~~~~~~~~~DlVid~~D~----------~~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 81 KAIAAKEHLRKIN-SEVEIVPVVTDVT-VEELEELVKEVDLIIDATDN----------FDTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred HHHHHHHHHHHHC-CCcEEEEEeccCC-HHHHHHHhcCCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 3455566666665 5666655544432 35888898889999987433 245556779999999999975
No 483
>PLN02535 glycolate oxidase
Probab=32.87 E-value=4.6e+02 Score=28.64 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=25.2
Q ss_pred CCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCc
Q 008172 364 NKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGES 408 (575)
Q Consensus 364 gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ET 408 (575)
..|+|...-+- --.||+.|+..|||+|++..-.
T Consensus 278 ~ipVi~dGGIr------------~g~Dv~KALalGA~aV~vGr~~ 310 (364)
T PLN02535 278 RVPVLLDGGVR------------RGTDVFKALALGAQAVLVGRPV 310 (364)
T ss_pred CCCEEeeCCCC------------CHHHHHHHHHcCCCEEEECHHH
Confidence 58998765433 3579999999999999996443
No 484
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=32.83 E-value=2.6e+02 Score=31.25 Aligned_cols=90 Identities=16% Similarity=0.291 Sum_probs=58.2
Q ss_pred HHHcCCCEEEecCcCChhhHHHHHHHHhccCCC-------------CceEEee---------------ecCHHHHhcHHH
Q 008172 274 GIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSR-------------SIKVLAK---------------IENLESLQKFEE 325 (575)
Q Consensus 274 al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~-------------~i~IIaK---------------IEt~~av~nlde 325 (575)
-...|+....+++|-.-+.-+.+++.+...+.+ ...++|. -+...=++.+++
T Consensus 60 iasLGa~a~l~GvvG~Deag~~L~~~l~~~~i~~~l~~~~~r~T~~K~Rv~s~nQQllRvD~Ee~~~~~~~~~ll~~~~~ 139 (467)
T COG2870 60 IASLGANAYLVGVVGKDEAGKALIELLKANGIDSDLLRDKNRPTIVKLRVLSRNQQLLRLDFEEKFPIEDENKLLEKIKN 139 (467)
T ss_pred HHHcCCCEEEEEeeccchhHHHHHHHHHhcCcccceEeecCCCceeeeeeecccceEEEecccccCcchhHHHHHHHHHH
Confidence 346788888888888888888888777642200 0122221 122334557788
Q ss_pred HHhcCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEe
Q 008172 326 IVEASDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVA 370 (575)
Q Consensus 326 I~~~sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPviva 370 (575)
.++-.|++++. +++---+-. -+.||+.||++|+||.+-
T Consensus 140 ~l~~~~~vVLS------DY~KG~L~~-~q~~I~~ar~~~~pVLvD 177 (467)
T COG2870 140 ALKSFDALVLS------DYAKGVLTN-VQKMIDLAREAGIPVLVD 177 (467)
T ss_pred HhhcCCEEEEe------ccccccchh-HHHHHHHHHHcCCcEEEC
Confidence 88889999996 222222222 457889999999999983
No 485
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=32.74 E-value=1.2e+02 Score=31.39 Aligned_cols=76 Identities=12% Similarity=0.258 Sum_probs=45.7
Q ss_pred ccCCCCCc-cCHHHHHHHHHcCCCEEEecC------cCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHH---
Q 008172 258 HGLPTLSK-KDWDDIEFGIAEGVDFIAMSF------VCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIV--- 327 (575)
Q Consensus 258 ~~lp~lse-kD~~di~~al~~gvd~I~~Sf------V~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~--- 327 (575)
+.|..|-| ++.++++.|++.|++.|.+.. --+.+...++..++. ++..+|+ |+ |+.+.+++.
T Consensus 150 lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip----~~~~~Is--ES--GI~t~~d~~~l~ 221 (247)
T PRK13957 150 LGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLP----PNIVKVG--ES--GIESRSDLDKFR 221 (247)
T ss_pred cCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCC----CCcEEEE--cC--CCCCHHHHHHHH
Confidence 34444433 678899999999999998864 222344444555442 3444454 33 555554443
Q ss_pred hcCCEEEEeCCCCC
Q 008172 328 EASDGIMVARGDLG 341 (575)
Q Consensus 328 ~~sDgImIaRGDLg 341 (575)
..+||++||-.-+.
T Consensus 222 ~~~davLvG~~lm~ 235 (247)
T PRK13957 222 KLVDAALIGTYFME 235 (247)
T ss_pred HhCCEEEECHHHhC
Confidence 23899999855443
No 486
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=32.73 E-value=3.6e+02 Score=27.97 Aligned_cols=94 Identities=16% Similarity=0.063 Sum_probs=50.5
Q ss_pred HHHHHh-c-CCEEEEeCCCCCCCC---CCCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhH-HHHHH
Q 008172 323 FEEIVE-A-SDGIMVARGDLGVDI---PLEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADV-SEAVR 396 (575)
Q Consensus 323 ldeI~~-~-sDgImIaRGDLg~e~---~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv-~nav~ 396 (575)
++..++ . +|||+++ | -.-|. ..++--.+.+..++.++ ...||++-+ ..++-.|..+. -.|..
T Consensus 30 i~~l~~~~Gv~gi~v~-G-stGE~~~Ls~eEr~~~~~~~~~~~~-~~~~viagv---------g~~~t~~ai~~a~~a~~ 97 (293)
T PRK04147 30 VRFNIEKQGIDGLYVG-G-STGEAFLLSTEEKKQVLEIVAEEAK-GKVKLIAQV---------GSVNTAEAQELAKYATE 97 (293)
T ss_pred HHHHHhcCCCCEEEEC-C-CccccccCCHHHHHHHHHHHHHHhC-CCCCEEecC---------CCCCHHHHHHHHHHHHH
Confidence 344444 3 8999985 3 22222 22332233333333332 236777643 23445555444 44778
Q ss_pred cccceEEeccCcCCCCCHHHHHHHHHHHHHHH
Q 008172 397 QYADALMLSGESAIGPFGQKAVSVLQMASSRM 428 (575)
Q Consensus 397 ~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~a 428 (575)
.|+|++|+..---...-+-+.++....++..+
T Consensus 98 ~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~ 129 (293)
T PRK04147 98 LGYDAISAVTPFYYPFSFEEICDYYREIIDSA 129 (293)
T ss_pred cCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhC
Confidence 99999999854333323456666667676554
No 487
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=32.67 E-value=4.6e+02 Score=28.22 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=77.1
Q ss_pred HHHHHHHHHc-CCCEEEecCc-CChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc-CCEEEEeCCCCCCCC
Q 008172 268 WDDIEFGIAE-GVDFIAMSFV-CDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA-SDGIMVARGDLGVDI 344 (575)
Q Consensus 268 ~~di~~al~~-gvd~I~~SfV-~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~-sDgImIaRGDLg~e~ 344 (575)
.+.....++. |+-.+..+|- ...+++..++. .| ++++.++=+..-- ..-.+. .|+++.--.+=|-+.
T Consensus 93 ~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~----~g---~~v~~~v~~~~~A---~~~~~~G~d~vI~~g~eAGGH~ 162 (336)
T COG2070 93 EAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKA----AG---IKVIHSVITVREA---LKAERAGADAVIAQGAEAGGHR 162 (336)
T ss_pred HHhhhhHHhcCCCCEEeccCCCCcHHHHHHHHH----cC---CeEEEEeCCHHHH---HHHHhCCCCEEEecCCcCCCcC
Confidence 4445556676 9999999999 57788888776 22 5677777554311 111122 799999888888887
Q ss_pred C----CCChHHHHHHHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEe
Q 008172 345 P----LEQIPTVQEIIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALML 404 (575)
Q Consensus 345 ~----~e~v~~~Qk~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmL 404 (575)
+ .......-.++.+.++. .|||.|.-+- .-.+++.|...|||+|..
T Consensus 163 g~~~~~~~t~~Lv~ev~~~~~~--iPViAAGGI~------------dg~~i~AAlalGA~gVq~ 212 (336)
T COG2070 163 GGVDLEVSTFALVPEVVDAVDG--IPVIAAGGIA------------DGRGIAAALALGADGVQM 212 (336)
T ss_pred CCCCCCccHHHHHHHHHHHhcC--CCEEEecCcc------------ChHHHHHHHHhccHHHHh
Confidence 7 34445555566555544 7999987665 345788899999998765
No 488
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=32.65 E-value=74 Score=34.55 Aligned_cols=50 Identities=14% Similarity=0.219 Sum_probs=36.0
Q ss_pred CHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhcCCceEEEEeCC
Q 008172 103 SMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEKLFCISVMIDTE 155 (575)
Q Consensus 103 ~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~~~~i~Il~Dl~ 155 (575)
+.+++++|.++|+++.|+-.-. .+..+.+..|++.-.+.|.+++++.|+.
T Consensus 33 tv~QI~~L~~aGceivRvavp~---~~~a~al~~I~~~l~~~g~~iPlVADIH 82 (359)
T PF04551_consen 33 TVAQIKRLEEAGCEIVRVAVPD---MEAAEALKEIKKRLRALGSPIPLVADIH 82 (359)
T ss_dssp HHHHHHHHHHCT-SEEEEEE-S---HHHHHHHHHHHHHHHCTT-SS-EEEEES
T ss_pred HHHHHHHHHHcCCCEEEEcCCC---HHHHHHHHHHHHhhccCCCCCCeeeecC
Confidence 4678999999999999987654 3445667777766666889999999974
No 489
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=32.51 E-value=1e+02 Score=27.67 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCCEEEecCcC--ChhhHHHHHHHHhccCCCCceEEe
Q 008172 269 DDIEFGIAEGVDFIAMSFVC--DADSVRHLKKYVSGKSSRSIKVLA 312 (575)
Q Consensus 269 ~di~~al~~gvd~I~~SfV~--sa~dv~~ir~~l~~~~~~~i~IIa 312 (575)
+.+..+.+.++|+|++|+.. +.+.++++.+.+++.+.+++.+++
T Consensus 41 ~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~ 86 (122)
T cd02071 41 EIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVG 86 (122)
T ss_pred HHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEE
Confidence 45567789999999999864 455556666666666544555554
No 490
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=32.35 E-value=97 Score=27.83 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=31.0
Q ss_pred cccccccCCCCEEEEeCCeeEEEEEEEECCeEEEEEecCeEe
Q 008172 198 AGFSEGIEVGDELVIDGGMASFEVIEKVGNDLRCKCTDPGVF 239 (575)
Q Consensus 198 ~~l~~~v~~Gd~IliDDG~i~l~V~~~~~~~i~~~V~~gG~l 239 (575)
.++.+.+++||+|..-.|-+- +|.+++++.+..++..|-.+
T Consensus 47 ~~~~~~Lk~Gd~VvT~gGi~G-~Vv~i~~~~v~lei~~g~~i 87 (106)
T PRK05585 47 KKMLSSLAKGDEVVTNGGIIG-KVTKVSEDFVIIELNDDTEI 87 (106)
T ss_pred HHHHHhcCCCCEEEECCCeEE-EEEEEeCCEEEEEECCCeEE
Confidence 467788999999999887554 67788888887777555444
No 491
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=32.17 E-value=2.7e+02 Score=29.91 Aligned_cols=129 Identities=16% Similarity=0.184 Sum_probs=65.0
Q ss_pred CCCccCHHHH--------HHHHHcCCCEEEecCc-------------CCh------------hhHHHHHHHHhccCCCCc
Q 008172 262 TLSKKDWDDI--------EFGIAEGVDFIAMSFV-------------CDA------------DSVRHLKKYVSGKSSRSI 308 (575)
Q Consensus 262 ~lsekD~~di--------~~al~~gvd~I~~SfV-------------~sa------------~dv~~ir~~l~~~~~~~i 308 (575)
.||+.|++.+ +.|.+.|+|+|=+..- +.. .-+.++.+.++++- ..
T Consensus 131 ~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~--~~ 208 (337)
T PRK13523 131 EMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW--DG 208 (337)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc--CC
Confidence 5788887766 5778899999966332 222 11223333333221 23
Q ss_pred eEEeeecCHH----H--HhcHHHHH----hc-CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHH-cCCCEEEehhhHHh
Q 008172 309 KVLAKIENLE----S--LQKFEEIV----EA-SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQ-LNKPVIVASQLLES 376 (575)
Q Consensus 309 ~IIaKIEt~~----a--v~nldeI~----~~-sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~-~gKPvivaTq~LeS 376 (575)
.|..||.-.+ | +++.-+|+ +. .|.|-|..|-... -+....+..+....+..++ .++||+....+-
T Consensus 209 ~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~-~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~-- 285 (337)
T PRK13523 209 PLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVP-ARIDVYPGYQVPFAEHIREHANIATGAVGLIT-- 285 (337)
T ss_pred CeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CCCCCCccccHHHHHHHHhhcCCcEEEeCCCC--
Confidence 5667775322 1 12222232 22 6999998773210 0111111112223333333 579999865432
Q ss_pred hhcCCCCChhhHhhHHHHHHcc-cceEEec
Q 008172 377 MVEYPTPTRAEVADVSEAVRQY-ADALMLS 405 (575)
Q Consensus 377 M~~~p~PtrAEv~Dv~nav~~G-~D~vmLs 405 (575)
.| .+...++.+| +|+|++.
T Consensus 286 -----~~-----~~a~~~l~~g~~D~V~~g 305 (337)
T PRK13523 286 -----SG-----AQAEEILQNNRADLIFIG 305 (337)
T ss_pred -----CH-----HHHHHHHHcCCCChHHhh
Confidence 12 2234567777 9999886
No 492
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=32.00 E-value=5.9e+02 Score=26.39 Aligned_cols=49 Identities=24% Similarity=0.425 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHc-CCCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHcccceEEeccCc
Q 008172 350 PTVQEIIIHVCRQL-NKPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQYADALMLSGES 408 (575)
Q Consensus 350 ~~~Qk~Ii~~c~~~-gKPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~G~D~vmLs~ET 408 (575)
+..-.+++++.+++ .+|+++=. .|+-.+..+++. +...|+|++.+++=+
T Consensus 142 ~~~~~eiv~~vr~~~~~pv~vKl----------~~~~~~~~~~a~~l~~~G~d~i~~~nt~ 192 (301)
T PRK07259 142 PELAYEVVKAVKEVVKVPVIVKL----------TPNVTDIVEIAKAAEEAGADGLSLINTL 192 (301)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEc----------CCCchhHHHHHHHHHHcCCCEEEEEccc
Confidence 45667888888876 89999732 345557777776 556799999887433
No 493
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=31.87 E-value=1.2e+02 Score=28.18 Aligned_cols=35 Identities=20% Similarity=0.148 Sum_probs=24.3
Q ss_pred HHHHHHHcCCCEEEecCcCC--hhhHHHHHHHHhccC
Q 008172 270 DIEFGIAEGVDFIAMSFVCD--ADSVRHLKKYVSGKS 304 (575)
Q Consensus 270 di~~al~~gvd~I~~SfV~s--a~dv~~ir~~l~~~~ 304 (575)
.+..+.+.++|+|++|+... ...++++.+.+++.+
T Consensus 46 i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~ 82 (137)
T PRK02261 46 FIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAG 82 (137)
T ss_pred HHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcC
Confidence 34567789999999999554 445566666666554
No 494
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=31.80 E-value=5.3e+02 Score=25.67 Aligned_cols=133 Identities=10% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc----CCEEEEeCCCCCCCC
Q 008172 269 DDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA----SDGIMVARGDLGVDI 344 (575)
Q Consensus 269 ~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~----sDgImIaRGDLg~e~ 344 (575)
.+...|.+.|+|+|=++ ++--.+.++|+.+.... ++. -+..|++|+.+. +|++++++=-=+..=
T Consensus 70 d~~~lA~~~~adGVHlg--~~d~~~~~~r~~~~~~~-----~iG-----~S~H~~~e~~~A~~~gaDYi~lgpvf~T~tK 137 (211)
T PRK03512 70 DYWRLAIKHQAYGVHLG--QEDLETADLNAIRAAGL-----RLG-----VSTHDDMEIDVALAARPSYIALGHVFPTQTK 137 (211)
T ss_pred CHHHHHHHcCCCEEEcC--hHhCCHHHHHHhcCCCC-----EEE-----EeCCCHHHHHHHhhcCCCEEEECCccCCCCC
Q ss_pred CCCChHHHHHHHHHHHHH-cCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcccceEEeccCcCCCCCHHHHHHHHHH
Q 008172 345 PLEQIPTVQEIIIHVCRQ-LNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGPFGQKAVSVLQM 423 (575)
Q Consensus 345 ~~e~v~~~Qk~Ii~~c~~-~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~ 423 (575)
+-..-+.--+.+.+.+.. ...||+.-..+= ..++......|+|++-+.+.-..-..|.++++-+.+
T Consensus 138 ~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~-------------~~ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~l~~ 204 (211)
T PRK03512 138 QMPSAPQGLAQLARHVERLADYPTVAIGGIS-------------LERAPAVLATGVGSIAVVSAITQAADWRAATAQLLE 204 (211)
T ss_pred CCCCCCCCHHHHHHHHHhcCCCCEEEECCCC-------------HHHHHHHHHcCCCEEEEhhHhhCCCCHHHHHHHHHH
Q ss_pred HHH
Q 008172 424 ASS 426 (575)
Q Consensus 424 I~~ 426 (575)
+..
T Consensus 205 ~~~ 207 (211)
T PRK03512 205 LAE 207 (211)
T ss_pred HHh
No 495
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=31.76 E-value=3.5e+02 Score=27.99 Aligned_cols=212 Identities=17% Similarity=0.185 Sum_probs=108.9
Q ss_pred cCCCCCccCHHHHHHHHHcCCCEEEecCcCChhhHHHHHHHHhccC------CCCceEEeeecCHHHHhcHHHHHhcCCE
Q 008172 259 GLPTLSKKDWDDIEFGIAEGVDFIAMSFVCDADSVRHLKKYVSGKS------SRSIKVLAKIENLESLQKFEEIVEASDG 332 (575)
Q Consensus 259 ~lp~lsekD~~di~~al~~gvd~I~~SfV~sa~dv~~ir~~l~~~~------~~~i~IIaKIEt~~av~nldeI~~~sDg 332 (575)
+.+.+.+...+.+..|.+.|+..+.+.=+ +.++...+.++..... +-|+.- .+-++.+.++.|.+.+.. |-
T Consensus 11 ~~~~~~~d~~~vi~~a~~~gv~~~~~~g~-~~~~~~~~~~la~~y~~v~~~~G~HP~~-~~~~~~~~~~~l~~~~~~-~~ 87 (256)
T COG0084 11 DFEEFDEDRDEVIARAREAGVKKMVVVGT-DLEDFKRALELAEKYPNVYAAVGVHPLD-ADEHSEEDLEELEQLAEH-HP 87 (256)
T ss_pred CchhhcCCHHHHHHHHHHcCCcEEEEeec-CHHHHHHHHHHHHhCCCeEEEEeeCCCc-cccccHHHHHHHHHHHhc-CC
Confidence 33444444455667789999999877654 5556666666554321 012222 222344444444444443 34
Q ss_pred EEEeCCCCCCCCCCCCh--HHHHH----HHHHHHHHcCCCEEEehhhHHhhhcCCCCChhhHhhHHHHHHcc---cceEE
Q 008172 333 IMVARGDLGVDIPLEQI--PTVQE----IIIHVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQY---ADALM 403 (575)
Q Consensus 333 ImIaRGDLg~e~~~e~v--~~~Qk----~Ii~~c~~~gKPvivaTq~LeSM~~~p~PtrAEv~Dv~nav~~G---~D~vm 403 (575)
=.+|=|+-|+++-...- ...|+ +-++.|++.+||+++= +|.--.|+++.+..- ..++|
T Consensus 88 ~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH-------------~R~A~~d~~~iL~~~~~~~~gi~ 154 (256)
T COG0084 88 KVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIH-------------TRDAHEDTLEILKEEGAPVGGVL 154 (256)
T ss_pred CeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEE-------------ccccHHHHHHHHHhcCCCCCEEE
Confidence 55555788877755333 33465 6678999999999973 343445555555442 33444
Q ss_pred eccCcCCCCCHHHHHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCCCCCchhhHHHHHHHHHHHhcCCcEEEEEcCChh
Q 008172 404 LSGESAIGPFGQKAVSVLQMASSRMELWSREENRQSALCGQRQLGESLHDRIAEQICNCAVDMANNLGVDAIFVYTKHGH 483 (575)
Q Consensus 404 Ls~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~AkaIVVfT~SG~ 483 (575)
=+ -.|. +++++++. +.. .| + .+ ...++..=|....+++..+..+.+++=|.+.+
T Consensus 155 Hc---FsGs-----~e~a~~~~-------d~G-~y--i----si----sG~itfk~a~~~~ev~~~iPldrLL~ETDsPy 208 (256)
T COG0084 155 HC---FSGS-----AEEARKLL-------DLG-FY--I----SI----SGIVTFKNAEKLREVARELPLDRLLLETDAPY 208 (256)
T ss_pred Ec---cCCC-----HHHHHHHH-------HcC-eE--E----EE----CceeecCCcHHHHHHHHhCCHhHeEeccCCCC
Confidence 33 1121 12222221 100 00 0 00 11111222555667777888888888888766
Q ss_pred HHHHHhccCC--CCcEEEEcCcHHHHHHhcccCCcEE
Q 008172 484 MASLLSRNRP--NPPIFAFTNDDSTRMALNLQWGVIP 518 (575)
Q Consensus 484 TAr~VSr~RP--~~PIiAvT~~~~~aR~L~L~~GV~P 518 (575)
.+.. -||. .-|= .-..++..++-.||+-+
T Consensus 209 l~P~--p~rGkrNeP~----~v~~v~~~iAelk~~~~ 239 (256)
T COG0084 209 LAPV--PYRGKRNEPA----YVRHVAEKLAELKGISA 239 (256)
T ss_pred CCCc--CCCCCCCCch----HHHHHHHHHHHHhCCCH
Confidence 5543 1222 1111 11256666666666543
No 496
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=31.71 E-value=4.7e+02 Score=28.01 Aligned_cols=102 Identities=16% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCCCceEEeee------cCHHHHhcHHHHHhc----CCEEEEeCCCCCCCCC------CCChHHHHHHH
Q 008172 293 VRHLKKYVSGKSSRSIKVLAKI------ENLESLQKFEEIVEA----SDGIMVARGDLGVDIP------LEQIPTVQEII 356 (575)
Q Consensus 293 v~~ir~~l~~~~~~~i~IIaKI------Et~~av~nldeI~~~----sDgImIaRGDLg~e~~------~e~v~~~Qk~I 356 (575)
++...+.+.... .+..|++-| .+..+.+..-+.++. +|++=+. +++| .-..+....++
T Consensus 121 ~~~~l~~i~~~~-~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElN-----lScPn~~~~~~~~~~~~~~~i 194 (335)
T TIGR01036 121 ADVLVERLKRAR-YKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVN-----VSSPNTPGLRDLQYKAELRDL 194 (335)
T ss_pred HHHHHHHHhhcc-CCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEE-----ccCCCCCCcccccCHHHHHHH
Q ss_pred HHHHHHcC--------CCEEEehhhHHhhhcCCCCChhhHhhHHH-HHHcccceEEeccCc
Q 008172 357 IHVCRQLN--------KPVIVASQLLESMVEYPTPTRAEVADVSE-AVRQYADALMLSGES 408 (575)
Q Consensus 357 i~~c~~~g--------KPvivaTq~LeSM~~~p~PtrAEv~Dv~n-av~~G~D~vmLs~ET 408 (575)
++++++.- +|+++ .-.|.-+..++.+++. +...|+|++.+.+-+
T Consensus 195 ~~~V~~~~~~~~~~~~~Pv~v--------KLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~ 247 (335)
T TIGR01036 195 LTAVKQEQDGLRRVHRVPVLV--------KIAPDLTESDLEDIADSLVELGIDGVIATNTT 247 (335)
T ss_pred HHHHHHHHHhhhhccCCceEE--------EeCCCCCHHHHHHHHHHHHHhCCcEEEEECCC
No 497
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=31.64 E-value=3.2e+02 Score=25.39 Aligned_cols=44 Identities=27% Similarity=0.364 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHH---------HHHHHHHHHhh
Q 008172 99 PACCSMEDLEKLAMGGMNVARLNMCHNTREWHL---------DVIRKIKQLNH 142 (575)
Q Consensus 99 Pas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~---------~~i~~ir~~~~ 142 (575)
+...+.+.+++|.++|.+.+.+++-|++.+.+. ++++.++.+.+
T Consensus 95 ~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 147 (216)
T smart00729 95 PGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLRE 147 (216)
T ss_pred cccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 456689999999999999888888888876553 45556665543
No 498
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=31.61 E-value=4.5e+02 Score=28.38 Aligned_cols=127 Identities=20% Similarity=0.126 Sum_probs=70.6
Q ss_pred ChhhHhhHHHHHHcccceEEeccCcC-------CCCCHHHHHHHHHHHHHHHhhhhhhhhhHHhhhcccccCCCCCCchh
Q 008172 384 TRAEVADVSEAVRQYADALMLSGESA-------IGPFGQKAVSVLQMASSRMELWSREENRQSALCGQRQLGESLHDRIA 456 (575)
Q Consensus 384 trAEv~Dv~nav~~G~D~vmLs~ETa-------~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (575)
.|+-..|+-.++..|+|.+.+..-++ .|+=+.++++.+...++.|.+.-... .+ ..++ .. ...
T Consensus 71 ~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v----~~-~~ed----~~-r~~ 140 (365)
T TIGR02660 71 CRARDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFV----SV-GGED----AS-RAD 140 (365)
T ss_pred cCCCHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEE----EE-eecC----CC-CCC
Confidence 34456678888889999998875444 46667778887777766554321100 01 0111 11 112
Q ss_pred hHHHHHHHHHHHhcCCcEEEEEcCChh-----HHHHHhccCCC--CcEEEEcCcH---HHHHHh-cccCCcEEEE
Q 008172 457 EQICNCAVDMANNLGVDAIFVYTKHGH-----MASLLSRNRPN--PPIFAFTNDD---STRMAL-NLQWGVIPVL 520 (575)
Q Consensus 457 ~~ia~~av~~a~~~~AkaIVVfT~SG~-----TAr~VSr~RP~--~PIiAvT~~~---~~aR~L-~L~~GV~Pvl 520 (575)
.......++.+.+.+++.|.+-...|. .+.++.+.|.. +||=.-++|. .+|..| .+..|+.-+.
T Consensus 141 ~~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~ANalaA~~aGa~~vd 215 (365)
T TIGR02660 141 PDFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAVDLPLEMHAHNDLGMATANTLAAVRAGATHVN 215 (365)
T ss_pred HHHHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhCCCEEE
Confidence 334445556677789998777777776 44455555433 4554445443 344444 3455554443
No 499
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=31.57 E-value=1.2e+02 Score=32.11 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=44.8
Q ss_pred eEEEecCCCCCCHHHHHHHHHcCCcEEEeeCCCCCHHHHHHHHHHHHHHhhhcCCce
Q 008172 92 KMVCTIGPACCSMEDLEKLAMGGMNVARLNMCHNTREWHLDVIRKIKQLNHEKLFCI 148 (575)
Q Consensus 92 kIi~TiGPas~~~e~l~~li~~G~~v~RlN~SHg~~e~~~~~i~~ir~~~~~~~~~i 148 (575)
.+..=+ --+ +.+.+++.++.|.+..=+..||.+.++..+.-+.+++.....|.++
T Consensus 79 PV~lHL-DH~-~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~v 133 (293)
T PRK07315 79 PVAIHL-DHG-HYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISV 133 (293)
T ss_pred cEEEEC-CCC-CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 344444 334 6899999999999999999999999999988888888888776554
No 500
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=31.55 E-value=2.9e+02 Score=28.44 Aligned_cols=87 Identities=11% Similarity=0.111 Sum_probs=57.1
Q ss_pred HHHHHhccCCCCceEEeeecCHHHHhcHHHHHhc--CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCEEEehhh
Q 008172 296 LKKYVSGKSSRSIKVLAKIENLESLQKFEEIVEA--SDGIMVARGDLGVDIPLEQIPTVQEIIIHVCRQLNKPVIVASQL 373 (575)
Q Consensus 296 ir~~l~~~~~~~i~IIaKIEt~~av~nldeI~~~--sDgImIaRGDLg~e~~~e~v~~~Qk~Ii~~c~~~gKPvivaTq~ 373 (575)
+|+.+.. |..-...+..+-++.. -||+.. .|.++|. +|=+.-++..+ ..++++|+..|.+.++
T Consensus 10 lk~~l~~-g~~~~g~~~~~~sp~~----~e~~a~~G~D~v~iD-----~EHg~~~~~~~-~~~i~a~~~~g~~~lV---- 74 (256)
T PRK10558 10 FKAALAA-KQVQIGCWSALANPIT----TEVLGLAGFDWLVLD-----GEHAPNDVSTF-IPQLMALKGSASAPVV---- 74 (256)
T ss_pred HHHHHHc-CCceEEEEEcCCCcHH----HHHHHhcCCCEEEEc-----cccCCCCHHHH-HHHHHHHhhcCCCcEE----
Confidence 4555543 2122456666666653 455555 6999995 34444555555 4688899999999997
Q ss_pred HHhhhcCCCCChhhHhhHHHHHHcccceEEec
Q 008172 374 LESMVEYPTPTRAEVADVSEAVRQYADALMLS 405 (575)
Q Consensus 374 LeSM~~~p~PtrAEv~Dv~nav~~G~D~vmLs 405 (575)
.-|.+ +-..+.+++..|+++||+.
T Consensus 75 -----Rvp~~---~~~~i~r~LD~Ga~giivP 98 (256)
T PRK10558 75 -----RVPTN---EPVIIKRLLDIGFYNFLIP 98 (256)
T ss_pred -----ECCCC---CHHHHHHHhCCCCCeeeec
Confidence 22333 4456778888999999995
Done!