Query 008173
Match_columns 575
No_of_seqs 114 out of 270
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 20:24:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2233 Alpha-N-acetylglucosam 100.0 2E-169 4E-174 1321.6 44.7 530 1-568 134-666 (666)
2 PF05089 NAGLU: Alpha-N-acetyl 100.0 9E-110 2E-114 858.0 16.7 258 1-265 75-332 (333)
3 PF12972 NAGLU_C: Alpha-N-acet 100.0 3.2E-80 7E-85 630.3 22.7 267 271-566 1-267 (267)
4 PF02449 Glyco_hydro_42: Beta- 93.8 0.075 1.6E-06 57.1 4.8 93 21-119 47-140 (374)
5 PF00150 Cellulase: Cellulase 92.1 1.2 2.6E-05 44.7 10.5 134 15-184 56-200 (281)
6 PF12891 Glyco_hydro_44: Glyco 80.9 1.7 3.7E-05 44.6 3.8 120 23-147 26-175 (239)
7 cd06593 GH31_xylosidase_YicI Y 79.7 22 0.00048 37.1 11.9 108 24-144 69-198 (308)
8 PF13812 PPR_3: Pentatricopept 66.8 3.5 7.7E-05 27.8 1.4 20 18-37 15-34 (34)
9 PF01229 Glyco_hydro_39: Glyco 60.6 13 0.00028 41.7 5.2 104 24-146 87-198 (486)
10 cd06592 GH31_glucosidase_KIAA1 56.2 72 0.0016 33.5 9.6 82 24-117 73-166 (303)
11 PF02065 Melibiase: Melibiase; 51.5 41 0.00089 37.1 7.1 121 24-152 107-235 (394)
12 cd04257 AAK_AK-HSDH AAK_AK-HSD 47.4 12 0.00025 39.5 2.0 68 23-114 169-236 (294)
13 PF05119 Terminase_4: Phage te 45.5 24 0.00051 30.4 3.3 31 8-38 55-85 (100)
14 PRK00035 hemH ferrochelatase; 43.8 3.6E+02 0.0079 28.5 12.6 154 8-181 69-269 (333)
15 cd06565 GH20_GcnA-like Glycosy 43.4 2.5E+02 0.0054 29.5 11.2 206 8-244 54-275 (301)
16 COG1422 Predicted membrane pro 43.1 74 0.0016 32.0 6.7 65 385-449 65-130 (201)
17 cd06594 GH31_glucosidase_YihQ 42.2 1.4E+02 0.0031 31.6 9.3 105 24-143 74-204 (317)
18 PRK15014 6-phospho-beta-glucos 39.6 62 0.0013 36.5 6.3 71 20-117 109-179 (477)
19 PF03705 CheR_N: CheR methyltr 37.2 27 0.00058 27.0 2.2 20 18-37 24-43 (57)
20 cd06388 PBP1_iGluR_AMPA_GluR4 33.9 1.2E+02 0.0026 32.6 7.2 93 21-140 189-287 (371)
21 cd03198 GST_C_CLIC GST_C famil 33.4 1.1E+02 0.0025 28.5 6.1 43 397-439 5-47 (134)
22 cd06394 PBP1_iGluR_Kainate_KA1 32.4 93 0.002 33.2 6.0 67 21-102 197-268 (333)
23 PF10629 DUF2475: Protein of u 31.8 21 0.00046 30.0 0.8 12 38-49 4-15 (71)
24 PF12876 Cellulase-like: Sugar 29.6 78 0.0017 26.9 4.0 53 99-152 2-64 (88)
25 TIGR00676 fadh2 5,10-methylene 28.9 58 0.0012 33.8 3.6 76 25-111 174-258 (272)
26 TIGR03356 BGL beta-galactosida 28.0 3.4E+02 0.0073 30.2 9.6 103 15-145 88-210 (427)
27 PF13410 GST_C_2: Glutathione 27.0 95 0.0021 24.3 3.9 28 418-446 3-30 (69)
28 TIGR00825 EIIBC-GUT PTS system 26.8 13 0.00028 39.2 -1.5 42 5-47 10-58 (331)
29 cd06599 GH31_glycosidase_Aec37 26.5 4.3E+02 0.0093 27.9 9.7 83 23-117 75-169 (317)
30 cd06389 PBP1_iGluR_AMPA_GluR2 26.4 2.3E+02 0.0051 30.3 7.9 59 21-94 187-250 (370)
31 PF02836 Glyco_hydro_2_C: Glyc 24.6 3.2E+02 0.0069 28.2 8.3 106 22-145 37-152 (298)
32 cd03309 CmuC_like CmuC_like. P 24.3 3.5E+02 0.0077 28.9 8.6 115 5-135 177-320 (321)
33 cd06597 GH31_transferase_CtsY 23.5 5.9E+02 0.013 27.3 10.2 85 24-119 88-190 (340)
34 COG5005 Mu-like prophage prote 22.9 24 0.00051 33.1 -0.5 42 175-216 62-105 (140)
35 TIGR00756 PPR pentatricopeptid 22.4 58 0.0012 21.3 1.5 19 19-37 15-33 (35)
36 COG0276 HemH Protoheme ferro-l 21.9 1E+03 0.022 25.7 13.8 159 9-182 69-265 (320)
37 PF08858 IDEAL: IDEAL domain; 21.8 3.3E+02 0.0071 19.9 5.8 29 398-426 9-37 (37)
38 cd06380 PBP1_iGluR_AMPA N-term 20.5 3.4E+02 0.0073 28.7 7.6 17 21-37 194-210 (382)
No 1
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-169 Score=1321.61 Aligned_cols=530 Identities=45% Similarity=0.861 Sum_probs=514.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCCCCCCCchhhHhhCCCCceeccCCCCCCCCCCcccccccc
Q 008173 1 MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLL 80 (575)
Q Consensus 1 MgNi~gwgGPLp~~wi~~q~~LQ~kIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gf~~~~~~~~~~~L 80 (575)
||||++||||||++|+..|.-||||||+|||+||||||||+|+||||.+++++||++++++++.|+.|. ++|||.++|
T Consensus 134 MGNl~awgGpLs~aw~~~ql~LqkrIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~--s~~~C~l~v 211 (666)
T KOG2233|consen 134 MGNLHAWGGPLSPAWMLNQLLLQKRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFT--SRYSCMLLV 211 (666)
T ss_pred hcCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCC--cceeeeEEc
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 699999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCCCcccccCCCCCCCCCCCChhHHHHHHHHHHHHHhccCCCceEEEecccCCCCCCC
Q 008173 81 DATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFW 160 (575)
Q Consensus 81 dP~DplF~~i~~~F~~~q~~~yG~~~h~Y~~DpFnE~~pp~~d~~~L~~~~~~v~~am~~~dP~AvWvmQgW~F~~~~fW 160 (575)
.|+||||.+||.+|+++|+|+||.++|+|+||||||+.||+++|+|+++.+.+||+||+++||+||||||||+|.+|+||
T Consensus 212 ~P~dplF~eIgs~Flr~~~kefG~~tniy~~DpFNE~~Pp~sepey~~staaAiyesm~kvdknaVWllQgWlF~~d~FW 291 (666)
T KOG2233|consen 212 SPFDPLFQEIGSTFLRHQIKEFGGVTNIYSADPFNEILPPESEPEYVKSTAAAIYESMKKVDKNAVWLLQGWLFTYDPFW 291 (666)
T ss_pred cCCcchHHHHHHHHHHHHHHHhCCcccccccCcccccCCCCCChHHHHHHHHHHHHHHhccCcceEEeeecceeecCCCC
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHhhhCCCCCCEEEEecCCCcccccccccCCCCCCceeeeccCCCCccccccchhhhhcChHHhhhCCCCceEEe
Q 008173 161 RPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMVGV 240 (575)
Q Consensus 161 ~~~~~~a~L~~Vp~~~mliLDL~~E~~p~W~~~~~f~G~pwIWc~L~NFGGn~gl~G~l~~i~~~~~~a~~~~~~~m~Gi 240 (575)
++.++||||++||.||||||||++|..|+|++|.+|+|||||||||||||||.+|+|.++.|+.||..|+..+||+|||+
T Consensus 292 ~~~~ikafL~avP~GrllVLDLyaEv~P~~~~Tasf~GqpfIWCmLHNFGGn~~lfGal~~InsG~e~Ar~~~nStlVGt 371 (666)
T KOG2233|consen 292 PPWQIKAFLSAVPRGRLLVLDLYAEVVPAWQMTASFQGQPFIWCMLHNFGGNRELFGALQKINSGPELARMKPNSTLVGT 371 (666)
T ss_pred ChHHHHHHHhcCCcCcEEEEehhhhhhhHHHhhhhhcCCceeEEEeeccCCcHhhhhhHHHhccCHHHHhcCCCCceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCccccccChhHHHHHHhhcCCCCCCCHHHHHHHHhhcccCCCChHHHHHHHHHHhcccCCCCCCCCCC-CcceeccCC
Q 008173 241 GMSMEGIEQNPVVYDLMSEMAFQHEKVDVKAWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKN-RDVIVAFPD 319 (575)
Q Consensus 241 G~tpEGi~~NpvvYel~~d~aW~~~~id~~~W~~~Ya~rRYG~~~~~~~~AW~iL~~tvY~~~~~~~~~~-~~~~~~~P~ 319 (575)
||+||||+||||||+||.|++|+++++|++.|+++|+.+|||+.++.+++||.+|.+|||||+++...++ ...+.+||+
T Consensus 372 Gm~~EgI~QN~VvYsf~~e~~wsde~ldl~~Wlksys~sRY~~~~~~~eaaW~lL~~tvYn~~~~~~~~~~~~~l~rRp~ 451 (666)
T KOG2233|consen 372 GMSMEGIDQNYVVYSFMIERGWSDEPLDLNNWLKSYSESRYGVDFKVAEAAWTLLAGTVYNCPGKWATRGFSYFLYRRPS 451 (666)
T ss_pred ccCccccccchhhHHHHHHhccCCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHhhhhcCCCcccccCCCceeeEeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998776665 666777776
Q ss_pred CCCCcccccccccccCCCCccccccccccCCCCCCCCCcCCHHHHHHHHHHHHhccccCCCC-CcccchHHHHHHHHHHH
Q 008173 320 VDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSAS-NTYRYDLIDLTRQALAK 398 (575)
Q Consensus 320 l~p~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~Yd~~~l~~A~~lll~~~~~l~~~-~~y~yDLvDvtRQvL~n 398 (575)
++ .++.+||+.+++..||++||.+.+.+..+ ++|||||||+|||+|+.
T Consensus 452 f~-------------------------------~k~~~Wyn~sev~~a~rllL~a~~~l~~e~~~fr~DlvDltRq~lqe 500 (666)
T KOG2233|consen 452 FQ-------------------------------RKTEYWYNVSEVFSAWRLLLTALVHLLGEHPLFRYDLVDLTRQMLQE 500 (666)
T ss_pred cc-------------------------------CCceeeecHHHHHHHHHHHHhhhhhhccCchhhHhHHHHHHHHHHHH
Confidence 54 14679999999999999999988777666 99999999999999999
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHhhCCCHHHHHHHHHHhhhcccccCC
Q 008173 399 YANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMWFD 478 (575)
Q Consensus 399 ~~~~~~~~~~~Ay~~kd~~~~~~~~~~~l~li~dlD~LL~t~~~flLg~Wl~~Ar~~g~~~~ek~~yE~NAR~~IT~WG~ 478 (575)
.++++|.++.+||..||...+.+.|.++++|+.|||.+|+++.+||||.||++||+.|.+.+|++.||.|||+|||+|||
T Consensus 501 lanq~y~e~~sAflkkd~~sl~~~~~~llelf~dle~~lasd~nfLlg~WleqAk~~A~n~~er~~fe~nar~qlT~Wgp 580 (666)
T KOG2233|consen 501 LANQAYLEARSAFLKKDKQSLGALSEKLLELFQDLESYLASDDNFLLGQWLEQAKSAAPNSEERQVFEVNARDQLTVWGP 580 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHhhCCChhhhhhccccccceEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCcccccccccchhhhhhHHHHHHHHHHHHHHHhcCCCCChHHHHHHH-HHHhhhhhcCCCcCCCCCCCcHHH
Q 008173 479 NTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREW-IKLTNDWQNGRNVYPVESNGDALI 557 (575)
Q Consensus 479 ~~~~~~~~L~DYA~k~W~GL~~dyY~pRW~~f~~~l~~~l~~~~~f~~~~~~~~~-~~~E~~W~~~~~~y~~~p~gd~~~ 557 (575)
. |+|+|||||+||||++|||.|||++|++.+.+++..++||+.++|..+| ..+|.+++.++.+||++|.||+++
T Consensus 581 ~-----gqilDYA~kqwaGLvsdYY~pRwrlf~e~il~slhd~~pFn~t~f~~~v~~~~e~~fs~s~~vYPv~p~Gdt~~ 655 (666)
T KOG2233|consen 581 T-----GQILDYANKQWAGLVSDYYGPRWRLFLEWILESLHDGKPFNHTEFSISVFRDVERPFSISNIVYPVKPKGDTLA 655 (666)
T ss_pred C-----cchhhHHHHHHHHhhhhcccHHHHHHHHHHHHHHhcCCCccccchhhHHHHhhhccccccccccccCCCccHHH
Confidence 5 5899999999999999999999999999999999999999999999998 599999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 008173 558 TSQWLYNKYLQ 568 (575)
Q Consensus 558 ~a~~l~~ky~~ 568 (575)
+++.|+.||++
T Consensus 656 is~~if~ky~P 666 (666)
T KOG2233|consen 656 ISRHIFSKYFP 666 (666)
T ss_pred HHHHHHHhcCC
Confidence 99999999963
No 2
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=100.00 E-value=9.2e-110 Score=857.98 Aligned_cols=258 Identities=59% Similarity=1.153 Sum_probs=188.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCCCCCCCchhhHhhCCCCceeccCCCCCCCCCCcccccccc
Q 008173 1 MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLL 80 (575)
Q Consensus 1 MgNi~gwgGPLp~~wi~~q~~LQ~kIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gf~~~~~~~~~~~L 80 (575)
||||+|||||||++||++|++||||||+|||||||+||||||+||||++|++++|+|+|+++++|++| |||++|
T Consensus 75 MgNl~gwgGPLp~~w~~~q~~Lq~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f------~~~~~L 148 (333)
T PF05089_consen 75 MGNLQGWGGPLPQSWIDQQAELQKKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGF------CRPYFL 148 (333)
T ss_dssp TTS--STT----TTHHHHHHHHHHHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTE------E--EEE
T ss_pred hCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCC------CCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999996 479999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCCCcccccCCCCCCCCCCCChhHHHHHHHHHHHHHhccCCCceEEEecccCCCCCCC
Q 008173 81 DATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFW 160 (575)
Q Consensus 81 dP~DplF~~i~~~F~~~q~~~yG~~~h~Y~~DpFnE~~pp~~d~~~L~~~~~~v~~am~~~dP~AvWvmQgW~F~~~~fW 160 (575)
||+||||++||++||++|+|+|| ++|||++|||||++||+++++||+++|++||++|+++||+||||||||||++++||
T Consensus 149 ~P~dplF~~i~~~F~~~q~~~yG-~~~~Y~~D~FnE~~p~~~~~~~l~~~s~~v~~am~~~dp~AvWvmQgWlF~~~~fW 227 (333)
T PF05089_consen 149 DPTDPLFAEIAKLFYEEQIKLYG-TDHIYAADPFNEGGPPSGDPEYLANVSKAVYKAMQAADPDAVWVMQGWLFYYDPFW 227 (333)
T ss_dssp -SS--HHHHHHHHHHHHHHHHH----SEEE--TTTTS---TTS---HHHHHHHHHHHHHHH-TT-EEEEEE--------B
T ss_pred CCCCchHHHHHHHHHHHHHHhcC-CCceeCCCccCCCCCCCCchHHHHHHHHHHHHHHHhhCCCcEEEEccccccccccc
Confidence 99999999999999999999999 78999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHhhhCCCCCCEEEEecCCCcccccccccCCCCCCceeeeccCCCCccccccchhhhhcChHHhhhCCCCceEEe
Q 008173 161 RPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMVGV 240 (575)
Q Consensus 161 ~~~~~~a~L~~Vp~~~mliLDL~~E~~p~W~~~~~f~G~pwIWc~L~NFGGn~gl~G~l~~i~~~~~~a~~~~~~~m~Gi 240 (575)
++++++|||++||+||||||||+||..|+|+++++|+|||||||||||||||+||+|+++.|++++.+|+++++++|+||
T Consensus 228 ~~~~~~a~L~~Vp~~~mliLDL~se~~p~w~~~~~f~G~pwIwc~L~NFGG~~gl~G~~~~i~~~~~~a~~~~~~~m~G~ 307 (333)
T PF05089_consen 228 TPNPIKALLSGVPKGRMLILDLFSERFPQWKRTESFYGKPWIWCMLHNFGGNTGLYGNLENIASGPIEARASPNSNMVGI 307 (333)
T ss_dssp TTBS-HHHHTT-SGGGEEEEETTTTTS---HHHHCTT---EEEEE---STT--SS---HHHHHHHHHHHHHT--S-EEEE
T ss_pred CcchHHHHHcCCCCCCeEEEEccccccchhccccccccchhhhhcccCCCCCCCCcccHHHHHhhHHHHHHhcCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred eeCccccccChhHHHHHHhhcCCCC
Q 008173 241 GMSMEGIEQNPVVYDLMSEMAFQHE 265 (575)
Q Consensus 241 G~tpEGi~~NpvvYel~~d~aW~~~ 265 (575)
|+|||||||||||||||+|++|+++
T Consensus 308 G~tpEgi~~NpvvYeL~~e~aW~~~ 332 (333)
T PF05089_consen 308 GLTPEGIEQNPVVYELMLEMAWRKD 332 (333)
T ss_dssp EE--S-S-S-HHHHHHHHHGGG-SS
T ss_pred EecccccccCHHHHHHHHHhcccCC
Confidence 9999999999999999999999975
No 3
>PF12972 NAGLU_C: Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain; InterPro: IPR024732 Alpha-N-acetylglucosaminidase is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB, or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This C-terminal domain has an all alpha helical fold [].; PDB: 2VC9_A 2VCC_A 2VCB_A 2VCA_A 4A4A_A.
Probab=100.00 E-value=3.2e-80 Score=630.28 Aligned_cols=267 Identities=41% Similarity=0.823 Sum_probs=204.6
Q ss_pred HHHHHHhhcccCCCChHHHHHHHHHHhcccCCCCCCCCCCCcceeccCCCCCCcccccccccccCCCCccccccccccCC
Q 008173 271 AWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSETS 350 (575)
Q Consensus 271 ~W~~~Ya~rRYG~~~~~~~~AW~iL~~tvY~~~~~~~~~~~~~~~~~P~l~p~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 350 (575)
+||++|++||||+.++++.+||++|++|||++++...+++++++++||+++.. ..+
T Consensus 1 ~Wi~~Y~~rRYG~~~~~~~~AW~iL~~tvY~~~~~~~~~~~si~~~rPsl~~~------------------------~~~ 56 (267)
T PF12972_consen 1 EWIKDYATRRYGKYDPEAREAWQILLRTVYNNTGGQYGRGESIFCARPSLNGN------------------------SAS 56 (267)
T ss_dssp HHHHHHHHHHHT---HHHHHHHHHHHHTTTS---S---SS--GGGS-S-SS---------------------------SS
T ss_pred ChHHHHHHccCCCCCHHHHHHHHHHHhhhCCCCCCCCCCCcCceeeCCCCCcc------------------------ccc
Confidence 69999999999999999999999999999999877777778999999988643 345
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHhccccCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Q 008173 351 SYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELV 430 (575)
Q Consensus 351 ~~~~~~~~Yd~~~l~~A~~lll~~~~~l~~~~~y~yDLvDvtRQvL~n~~~~~~~~~~~Ay~~kd~~~~~~~~~~~l~li 430 (575)
+|+++.++|||.+|++||++||+++++|+++++|||||||||||||+|+|+.+|.++++||+++|.+.|++.+++||+||
T Consensus 57 ~~~~~~~~Yd~~~l~~A~~~ll~a~~~l~~~~~yryDlvDvtRQvL~n~~~~~~~~~~~ay~~~d~~~~~~~~~~~l~ll 136 (267)
T PF12972_consen 57 TWGPPGIWYDPADLEKAWRLLLKAADELKDSETYRYDLVDVTRQVLSNYADELYQQLVDAYNSKDIEAFKALSARFLELL 136 (267)
T ss_dssp TT------S-HHHHHHHHHHHHHCHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhHHhcCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCChHHHHHHHHhhCCCHHHHHHHHHHhhhcccccCCCCCcCCCCCcccccccccchhhhhhHHHHHHH
Q 008173 431 EDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIY 510 (575)
Q Consensus 431 ~dlD~LL~t~~~flLg~Wl~~Ar~~g~~~~ek~~yE~NAR~~IT~WG~~~~~~~~~L~DYA~k~W~GL~~dyY~pRW~~f 510 (575)
+|||.||+||++|+||+||++||++|.|++||++||+|||+|||+|||+ |+|+|||||+|+|||+|||+|||++|
T Consensus 137 ~dlD~lL~t~~~f~Lg~Wi~~Ar~~g~~~~e~~~yE~NAR~qIT~Wg~~-----g~l~DYA~k~W~GL~~dyY~pRW~~f 211 (267)
T PF12972_consen 137 DDLDRLLATNPEFLLGKWIEDARAWGTTPEEKDLYEYNARNQITLWGPS-----GELHDYANKQWSGLVSDYYLPRWQMF 211 (267)
T ss_dssp HHHHHHHTT-GGGBHHHHHHHHHHSSTT--HHHHHHHHHHHHTTTSHTT-----TS-TTTT----BTHHHHTHHHHHHHH
T ss_pred HHHHHHHCcCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccCCC-----CCcccchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 48999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHhhhhhcCCCcCCCCCCCcHHHHHHHHHHHH
Q 008173 511 FKYMIESLESGDGFRLKDWRREWIKLTNDWQNGRNVYPVESNGDALITSQWLYNKY 566 (575)
Q Consensus 511 ~~~l~~~l~~~~~f~~~~~~~~~~~~E~~W~~~~~~y~~~p~gd~~~~a~~l~~ky 566 (575)
|++|.++++++++|+.++|+.+++++|++|+++++.||++|+||++.+|++||+||
T Consensus 212 ~~~l~~~l~~~~~~d~~~~~~~~~~~E~~W~~~~~~y~~~~~gd~~~~a~~l~~ky 267 (267)
T PF12972_consen 212 FDYLRAALENGRPFDQTAFRRKLFAWEEKWVNSTKVYPTEPTGDPVEVARRLYQKY 267 (267)
T ss_dssp HHHHHHHHTT-S------H----HHHHHHHHTTS----SS-----HHHHHHH----
T ss_pred HHHHHHHHHhCCCCCHHHHhHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999998
No 4
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=93.77 E-value=0.075 Score=57.12 Aligned_cols=93 Identities=18% Similarity=0.221 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHcCCeeccCCCCCCCchhhHhhCCCCceecc-CCCCCCCCCCccccccccCCCChHHHHHHHHHHHHHH
Q 008173 21 VLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQL-GNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQL 99 (575)
Q Consensus 21 ~LQ~kIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~-~~W~gf~~~~~~~~~~~LdP~DplF~~i~~~F~~~q~ 99 (575)
..-.++|+++++.||+.||--+.+..|.-+.+++|++..+.. |...++.. ....++.+|.|.+..+.|++++.
T Consensus 47 ~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~~~~g~------~~~~~~~~p~yr~~~~~~~~~l~ 120 (374)
T PF02449_consen 47 SWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRRRGFGS------RQHYCPNSPAYREYARRFIRALA 120 (374)
T ss_dssp HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSBEECCC------STT-HCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCcCccCC------ccccchhHHHHHHHHHHHHHHHH
Confidence 345678999999999999988888899999999999876443 33322221 12357899999999999999999
Q ss_pred HHhCCCCcccccCCCCCCCC
Q 008173 100 KEYGRTSHIYNCDTFDENTP 119 (575)
Q Consensus 100 ~~yG~~~h~Y~~DpFnE~~p 119 (575)
+.|++.-++.+.+..||.+-
T Consensus 121 ~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 121 ERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp HHHTTTTTEEEEEECCSTTC
T ss_pred hhccccceEEEEEeccccCc
Confidence 99997777899999999765
No 5
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=92.14 E-value=1.2 Score=44.66 Aligned_cols=134 Identities=13% Similarity=0.148 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeccCCCCCCCchhhHhhCCCCceeccCCCCCCCCCCccccccccCCCChHHHHHHHHH
Q 008173 15 WLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAF 94 (575)
Q Consensus 15 wi~~q~~LQ~kIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gf~~~~~~~~~~~LdP~DplF~~i~~~F 94 (575)
.-+...+-=++||+..++.||..||--... +.|+.-. -..+..+-...--+.|
T Consensus 56 ~~~~~~~~ld~~v~~a~~~gi~vild~h~~------------------~~w~~~~---------~~~~~~~~~~~~~~~~ 108 (281)
T PF00150_consen 56 YDETYLARLDRIVDAAQAYGIYVILDLHNA------------------PGWANGG---------DGYGNNDTAQAWFKSF 108 (281)
T ss_dssp BTHHHHHHHHHHHHHHHHTT-EEEEEEEES------------------TTCSSST---------STTTTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCCeEEEEeccC------------------ccccccc---------cccccchhhHHHHHhh
Confidence 334555555899999999999998732222 3463211 1122222233333347
Q ss_pred HHHHHHHhCCCCcccccCCCCCCCCCCCC-------hhHHHHHHHHHHHHHhccCCCceEEEec--ccCCCCCCCCchhH
Q 008173 95 IEQQLKEYGRTSHIYNCDTFDENTPPVDS-------PEYISSLGAAIYSGMQSGDSDAVWLMQG--WLFSYDPFWRPPQM 165 (575)
Q Consensus 95 ~~~q~~~yG~~~h~Y~~DpFnE~~pp~~d-------~~~L~~~~~~v~~am~~~dP~AvWvmQg--W~F~~~~fW~~~~~ 165 (575)
.+...+.|.+...+.+.|++||-.....+ +..+....++++++|+++||+..=++.| |. ....
T Consensus 109 ~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~~~~~--------~~~~ 180 (281)
T PF00150_consen 109 WRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGGGGWG--------ADPD 180 (281)
T ss_dssp HHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEEHHHH--------TBHH
T ss_pred hhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCCCccc--------cccc
Confidence 77888889435578899999998765332 3567889999999999999995545555 52 2222
Q ss_pred HHhhhCCCC--CCEEEEecCC
Q 008173 166 KALLNSVPL--GKLVVLDLFA 184 (575)
Q Consensus 166 ~a~L~~Vp~--~~mliLDL~~ 184 (575)
.+... .|. +..+|++...
T Consensus 181 ~~~~~-~P~~~~~~~~~~~H~ 200 (281)
T PF00150_consen 181 GAAAD-NPNDADNNDVYSFHF 200 (281)
T ss_dssp HHHHH-STTTTTTSEEEEEEE
T ss_pred hhhhc-CcccccCceeEEeeE
Confidence 22233 663 5677777643
No 6
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=80.86 E-value=1.7 Score=44.58 Aligned_cols=120 Identities=18% Similarity=0.230 Sum_probs=69.4
Q ss_pred HHHHHHHHHHcCCeec--cCCCCCCCchhh-----HhhCCCCceeccCCCC--------CCCCCCccccccccCCCChHH
Q 008173 23 QKKILVRIYELGMNPV--LPAFSGNVPAAL-----QNVFPSAKITQLGNWF--------SVKSDPRWCCTYLLDATDPLF 87 (575)
Q Consensus 23 Q~kIl~RmreLGM~PV--LPgF~G~VP~~~-----~~~~P~a~i~~~~~W~--------gf~~~~~~~~~~~LdP~DplF 87 (575)
-.+.+++-++-|+.++ || -.|.|++.= ..-||.++.-+|..|. |...... .+.-++|+.+.=
T Consensus 26 ~~~f~~~~~~~ga~~m~T~p-m~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~--~~~~~~P~~~~~ 102 (239)
T PF12891_consen 26 ADTFIDQNLAAGAYSMMTLP-MIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKT--ALTSNDPDTPDN 102 (239)
T ss_dssp HHHHHHHHHHTT-EEEEEE---SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSS--S--SSSGGSSSS
T ss_pred HHHHHHHhhhcCcceeEeec-ccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCC--CCCCCCCCCCcc
Confidence 3466777778899888 45 378888876 7889999988876553 1110000 122344542222
Q ss_pred HHHHHHHHHHHHHHhCCC-----CcccccCCCCCCC----------CCCCChhHHHHHHHHHHHHHhccCCCceE
Q 008173 88 IEIGRAFIEQQLKEYGRT-----SHIYNCDTFDENT----------PPVDSPEYISSLGAAIYSGMQSGDSDAVW 147 (575)
Q Consensus 88 ~~i~~~F~~~q~~~yG~~-----~h~Y~~DpFnE~~----------pp~~d~~~L~~~~~~v~~am~~~dP~AvW 147 (575)
......|+..+++.||+. -+||++| ||.. |-.-..+-|.+-.-++=++++++||.|.=
T Consensus 103 ~~y~~ewV~~l~~~~g~a~~~~gvk~y~lD--NEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v 175 (239)
T PF12891_consen 103 PVYMDEWVNYLVNKYGNASTNGGVKYYSLD--NEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKV 175 (239)
T ss_dssp EEEHHHHHHHHHHHH--TTSTTS--EEEES--S-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEE
T ss_pred HhHHHHHHHHHHHHHhccccCCCceEEEec--CchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeE
Confidence 234567888899999964 2899999 8864 22223345666677777899999999863
No 7
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=79.70 E-value=22 Score=37.15 Aligned_cols=108 Identities=19% Similarity=0.307 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCCeecc---CCCCCCCchhhHhh--------CCCCceeccCCCCCCCCCCccccccccCCCChHHHHHHH
Q 008173 24 KKILVRIYELGMNPVL---PAFSGNVPAALQNV--------FPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGR 92 (575)
Q Consensus 24 ~kIl~RmreLGM~PVL---PgF~G~VP~~~~~~--------~P~a~i~~~~~W~gf~~~~~~~~~~~LdP~DplF~~i~~ 92 (575)
++++++++++||+.|+ |...-- .+.+++. .++-+......|.+- ..++|.+.|--.+-=+
T Consensus 69 ~~~i~~l~~~G~~~~~~~~P~i~~~-~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~--------~~~~Dftnp~a~~w~~ 139 (308)
T cd06593 69 EGMLSRLKEKGFKVCLWINPYIAQK-SPLFKEAAEKGYLVKKPDGSVWQWDLWQPG--------MGIIDFTNPDACKWYK 139 (308)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCCC-chhHHHHHHCCeEEECCCCCeeeecccCCC--------cccccCCCHHHHHHHH
Confidence 6899999999999977 543211 1123322 122233333345442 3588999887664333
Q ss_pred HHHHHHHHHhCCCCcccccCCCCCCCCCCCC-----------hhHHHHHHHHHHHHHhccCCC
Q 008173 93 AFIEQQLKEYGRTSHIYNCDTFDENTPPVDS-----------PEYISSLGAAIYSGMQSGDSD 144 (575)
Q Consensus 93 ~F~~~q~~~yG~~~h~Y~~DpFnE~~pp~~d-----------~~~L~~~~~~v~~am~~~dP~ 144 (575)
.-++++.+ +| . ..+-.| |+|..|.... ..|--..++++|+++++..++
T Consensus 140 ~~~~~~~~-~G-i-d~~~~D-~~e~~p~~~~~~~g~~~~~~hn~y~~~~~~~~~~~~~~~~~~ 198 (308)
T cd06593 140 DKLKPLLD-MG-V-DCFKTD-FGERIPTDVVYYDGSDGEKMHNYYALLYNKAVYEATKEVKGE 198 (308)
T ss_pred HHHHHHHH-hC-C-cEEecC-CCCCCCccccccCCCCcceeeeHHHHHHHHHHHHHHHHhcCC
Confidence 33333222 56 3 567777 6776554321 124455788889988887775
No 8
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=66.78 E-value=3.5 Score=27.82 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHcCCee
Q 008173 18 QQLVLQKKILVRIYELGMNP 37 (575)
Q Consensus 18 ~q~~LQ~kIl~RmreLGM~P 37 (575)
++.+...++++.|++.|++|
T Consensus 15 g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 15 GDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CCHHHHHHHHHHHHHhCCCC
Confidence 35677899999999999998
No 9
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=60.56 E-value=13 Score=41.70 Aligned_cols=104 Identities=20% Similarity=0.315 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCeeccCCCCCCCchhhHhhCCCCceeccCCCCCCCCCCccccccccCCCC-hHHHHHHHHHHHHHHHHh
Q 008173 24 KKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATD-PLFIEIGRAFIEQQLKEY 102 (575)
Q Consensus 24 ~kIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gf~~~~~~~~~~~LdP~D-plF~~i~~~F~~~q~~~y 102 (575)
-+|++-+.+.||+|.+- -|+-|.++..... ..-.|.+ .+-.|.| ..+..+-+.|.++.++.|
T Consensus 87 D~i~D~l~~~g~~P~ve--l~f~p~~~~~~~~-----~~~~~~~----------~~~pp~~~~~W~~lv~~~~~h~~~RY 149 (486)
T PF01229_consen 87 DQILDFLLENGLKPFVE--LGFMPMALASGYQ-----TVFWYKG----------NISPPKDYEKWRDLVRAFARHYIDRY 149 (486)
T ss_dssp HHHHHHHHHCT-EEEEE--E-SB-GGGBSS-------EETTTTE----------E-S-BS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEE--EEechhhhcCCCC-----ccccccC----------CcCCcccHHHHHHHHHHHHHHHHhhc
Confidence 47999999999999664 3778887754211 1112322 2345655 778999999999999999
Q ss_pred CCCCcc--cccCCCCCCCCCC-C---C-hhHHHHHHHHHHHHHhccCCCce
Q 008173 103 GRTSHI--YNCDTFDENTPPV-D---S-PEYISSLGAAIYSGMQSGDSDAV 146 (575)
Q Consensus 103 G~~~h~--Y~~DpFnE~~pp~-~---d-~~~L~~~~~~v~~am~~~dP~Av 146 (575)
|. ..+ ......||-.-.. + . .+|+ ++-++++++++++||.+.
T Consensus 150 G~-~ev~~W~fEiWNEPd~~~f~~~~~~~ey~-~ly~~~~~~iK~~~p~~~ 198 (486)
T PF01229_consen 150 GI-EEVSTWYFEIWNEPDLKDFWWDGTPEEYF-ELYDATARAIKAVDPELK 198 (486)
T ss_dssp HH-HHHTTSEEEESS-TTSTTTSGGG-HHHHH-HHHHHHHHHHHHH-TTSE
T ss_pred CC-ccccceeEEeCcCCCcccccCCCCHHHHH-HHHHHHHHHHHHhCCCCc
Confidence 93 222 1235578854321 1 1 2455 577899999999999986
No 10
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=56.21 E-value=72 Score=33.52 Aligned_cols=82 Identities=18% Similarity=0.337 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCeecc---CCCCCCCchhhHhhC-CCCcee-------ccCC-CCCCCCCCccccccccCCCChHHHHHH
Q 008173 24 KKILVRIYELGMNPVL---PAFSGNVPAALQNVF-PSAKIT-------QLGN-WFSVKSDPRWCCTYLLDATDPLFIEIG 91 (575)
Q Consensus 24 ~kIl~RmreLGM~PVL---PgF~G~VP~~~~~~~-P~a~i~-------~~~~-W~gf~~~~~~~~~~~LdP~DplF~~i~ 91 (575)
+++++++++.||++|+ |.+. .-.+.+++.. .+.=|. -.+. |.+ .+.+||.++|.-.+.=
T Consensus 73 ~~mi~~l~~~G~k~~l~i~P~i~-~~s~~~~e~~~~g~~vk~~~g~~~~~~~~w~g--------~~~~~Dftnp~a~~w~ 143 (303)
T cd06592 73 KGMIDQLHDLGFRVTLWVHPFIN-TDSENFREAVEKGYLVSEPSGDIPALTRWWNG--------TAAVLDFTNPEAVDWF 143 (303)
T ss_pred HHHHHHHHHCCCeEEEEECCeeC-CCCHHHHhhhhCCeEEECCCCCCCcccceecC--------CcceEeCCCHHHHHHH
Confidence 6788999999999998 7543 2233454411 111111 1122 333 1568999999866555
Q ss_pred HHHHHHHHHHhCCCCcccccCCCCCC
Q 008173 92 RAFIEQQLKEYGRTSHIYNCDTFDEN 117 (575)
Q Consensus 92 ~~F~~~q~~~yG~~~h~Y~~DpFnE~ 117 (575)
..-+++.....| . ..+-+| |+|.
T Consensus 144 ~~~~~~~~~~~G-v-dg~w~D-~~E~ 166 (303)
T cd06592 144 LSRLKSLQEKYG-I-DSFKFD-AGEA 166 (303)
T ss_pred HHHHHHHHHHhC-C-cEEEeC-CCCc
Confidence 555555555568 3 677888 7885
No 11
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=51.48 E-value=41 Score=37.07 Aligned_cols=121 Identities=18% Similarity=0.136 Sum_probs=68.8
Q ss_pred HHHHHHHHHcCCeeccCCCCCCCch--hhHhhCCCCceeccCCCCCCCCCCccccccccCCCChHHHHHHHHHHHHHHHH
Q 008173 24 KKILVRIYELGMNPVLPAFSGNVPA--ALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKE 101 (575)
Q Consensus 24 ~kIl~RmreLGM~PVLPgF~G~VP~--~~~~~~P~a~i~~~~~W~gf~~~~~~~~~~~LdP~DplF~~i~~~F~~~q~~~ 101 (575)
+-+.++.+++||+|=|=-=..+|-. .+.+.+|+--+.. +.-..... ..-++||++.|--.+--...+..+.+.
T Consensus 107 ~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~-~~~~~~~~----r~~~vLD~~~pev~~~l~~~i~~ll~~ 181 (394)
T PF02065_consen 107 KPLADYIHSLGMKFGLWFEPEMVSPDSDLYREHPDWVLRD-PGRPPTLG----RNQYVLDLSNPEVRDYLFEVIDRLLRE 181 (394)
T ss_dssp HHHHHHHHHTT-EEEEEEETTEEESSSCHCCSSBGGBTCC-TTSE-ECB----TTBEEB-TTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEEeccccccchhHHHHhCccceeec-CCCCCcCc----ccceEEcCCCHHHHHHHHHHHHHHHHh
Confidence 4567788999999976533333322 2555566543321 21111111 124689999997666666666666678
Q ss_pred hCCCCcccccCCCCCCCCCCCCh---h---HHHHHHHHHHHHHhccCCCceEEEecc
Q 008173 102 YGRTSHIYNCDTFDENTPPVDSP---E---YISSLGAAIYSGMQSGDSDAVWLMQGW 152 (575)
Q Consensus 102 yG~~~h~Y~~DpFnE~~pp~~d~---~---~L~~~~~~v~~am~~~dP~AvWvmQgW 152 (575)
+| . .|...|--..+..+.+.. . |...+ -.+++.|++..|+-++-.=+|
T Consensus 182 ~g-i-dYiK~D~n~~~~~~~~~~~~~~~~~~~~~~-y~l~~~L~~~~P~v~iE~Css 235 (394)
T PF02065_consen 182 WG-I-DYIKWDFNRDITEAGSPSLPEGYHRYVLGL-YRLLDRLRARFPDVLIENCSS 235 (394)
T ss_dssp TT---SEEEEE-TS-TTS-SSTTS-GHHHHHHHHH-HHHHHHHHHHTTTSEEEE-BT
T ss_pred cC-C-CEEEeccccCCCCCCCCCchHHHHHHHHHH-HHHHHHHHHhCCCcEEEeccC
Confidence 99 3 799988654443332221 1 22222 357889999999999987776
No 12
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=47.40 E-value=12 Score=39.53 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCCeeccCCCCCCCchhhHhhCCCCceeccCCCCCCCCCCccccccccCCCChHHHHHHHHHHHHHHHHh
Q 008173 23 QKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEY 102 (575)
Q Consensus 23 Q~kIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gf~~~~~~~~~~~LdP~DplF~~i~~~F~~~q~~~y 102 (575)
.++|.+.+++.|..||.|||.|-=+ +-.++.+| -+| .|-+..-+|..+=-.....+
T Consensus 169 ~~~l~~~~~~~~~v~Vv~Gfig~~~--------~G~~ttlG-RGG---------------SD~~A~~lA~~l~a~~l~i~ 224 (294)
T cd04257 169 KERIKAWFSSNGKVIVVTGFIASNP--------QGETTTLG-RNG---------------SDYSAAILAALLDADQVEIW 224 (294)
T ss_pred HHHHHHHHhcCCCEEEecCcccCCC--------CCCEEECC-CCc---------------hHHHHHHHHHHhCCCEEEEE
Confidence 3444455555699999999988322 33345555 222 24455666665544445567
Q ss_pred CCCCcccccCCC
Q 008173 103 GRTSHIYNCDTF 114 (575)
Q Consensus 103 G~~~h~Y~~DpF 114 (575)
-+++.+|.+||=
T Consensus 225 tdVdGvyt~DP~ 236 (294)
T cd04257 225 TDVDGVYSADPR 236 (294)
T ss_pred eCCCccCCCCCC
Confidence 777889999993
No 13
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=45.52 E-value=24 Score=30.43 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=28.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCeec
Q 008173 8 GGPLPQSWLDQQLVLQKKILVRIYELGMNPV 38 (575)
Q Consensus 8 gGPLp~~wi~~q~~LQ~kIl~RmreLGM~PV 38 (575)
|++.+.-++..+.+..++|.+-.++||++|.
T Consensus 55 G~~~~nP~~~~~~~~~~~~~~l~~~lGLtP~ 85 (100)
T PF05119_consen 55 GNPKKNPAVSILNKAMKQMRSLASELGLTPA 85 (100)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 4688888999999999999999999999994
No 14
>PRK00035 hemH ferrochelatase; Reviewed
Probab=43.76 E-value=3.6e+02 Score=28.52 Aligned_cols=154 Identities=19% Similarity=0.228 Sum_probs=79.1
Q ss_pred CCCCCHHHHHHHHHHHHHH-----------------------HHHHHHcCC-----eeccCCCCCCC----chhhHhh--
Q 008173 8 GGPLPQSWLDQQLVLQKKI-----------------------LVRIYELGM-----NPVLPAFSGNV----PAALQNV-- 53 (575)
Q Consensus 8 gGPLp~~wi~~q~~LQ~kI-----------------------l~RmreLGM-----~PVLPgF~G~V----P~~~~~~-- 53 (575)
|.||.....++...||++. |++|++=|. -|..|-|+.++ +..+.+.
T Consensus 69 gSPl~~~t~~q~~~L~~~l~~~~~~~~V~~am~y~~P~i~eal~~l~~~G~~~IivlPL~p~~s~~t~gs~~~~i~~~~~ 148 (333)
T PRK00035 69 GSPLNVITRRQAEALQAELAARGPDLPVYLGMRYWNPSIEEALEALKADGVDRIVVLPLYPQYSYSTTASYFEDLARALA 148 (333)
T ss_pred CChhHHHHHHHHHHHHHHHhccCCCceEEEeecCCCCCHHHHHHHHHhcCCCEEEEEECCCccccccHHHHHHHHHHHHH
Confidence 6799888888888888764 345665564 36667666444 4444322
Q ss_pred -CC-CCceeccCCCCCCCCCCccccccccCCCChHHHHHHHHHHHHHHHHhCCC-CcccccCCCCCC---CCCCCChhH-
Q 008173 54 -FP-SAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRT-SHIYNCDTFDEN---TPPVDSPEY- 126 (575)
Q Consensus 54 -~P-~a~i~~~~~W~gf~~~~~~~~~~~LdP~DplF~~i~~~F~~~q~~~yG~~-~h~Y~~DpFnE~---~pp~~d~~~- 126 (575)
++ ..+|.- .+++. .+|.|-+.-..-+++..+.++.. .+.--+=.+|=. ....+|+ |
T Consensus 149 ~~~~~~~i~~-------------i~~~~---~~p~~i~~l~~~I~~~~~~~~~~~~~~~llfs~HG~P~~~~~~gd~-Y~ 211 (333)
T PRK00035 149 KLRLQPEIRF-------------IRSYY---DHPGYIEALAESIREALAKHGEDPEPDRLLFSAHGLPQRYIDKGDP-YQ 211 (333)
T ss_pred hcCCCCcEEE-------------eCCcc---CCHHHHHHHHHHHHHHHHhcCcccCCcEEEEecCCCchHHhhcCCC-hH
Confidence 22 111111 11222 45666665555555555555521 011122223310 0011233 4
Q ss_pred --HHHHHHHHHHHHhccCCCceEEEecccCCCCC-CCCchhHHHhhhCCCC---CCEEEEe
Q 008173 127 --ISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDP-FWRPPQMKALLNSVPL---GKLVVLD 181 (575)
Q Consensus 127 --L~~~~~~v~~am~~~dP~AvWvmQgW~F~~~~-fW~~~~~~a~L~~Vp~---~~mliLD 181 (575)
+.+.++.|.+.+.- +..-| ..+|+-...+ =|+.|.+...|..+.+ .+++|+=
T Consensus 212 ~~~~~t~~~l~~~l~~--~~~~~-~~~fqs~~g~~~Wl~P~~~~~l~~l~~~g~k~V~v~P 269 (333)
T PRK00035 212 QQCEETARLLAEALGL--PDEDY-DLTYQSRFGPEPWLEPYTDDTLEELAEKGVKKVVVVP 269 (333)
T ss_pred HHHHHHHHHHHHHhCC--CCCCe-EEEeeCCCCCCccCCCCHHHHHHHHHHcCCCeEEEEC
Confidence 44456666666542 12223 4577633333 5999999999988875 3677643
No 15
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=43.37 E-value=2.5e+02 Score=29.55 Aligned_cols=206 Identities=13% Similarity=0.024 Sum_probs=107.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCeec-cCCCCCCCchhhHhhCCCCceeccCCCCCCCCCCccccccccCCCChH
Q 008173 8 GGPLPQSWLDQQLVLQKKILVRIYELGMNPV-LPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPL 86 (575)
Q Consensus 8 gGPLp~~wi~~q~~LQ~kIl~RmreLGM~PV-LPgF~G~VP~~~~~~~P~a~i~~~~~W~gf~~~~~~~~~~~LdP~Dpl 86 (575)
+|+++++=+ +.|++.-+++||+-| .--..||.=..++ +|. ......+.. .+..|+|.+|-
T Consensus 54 ~~~yT~~ei-------~ei~~yA~~~gI~vIPeid~pGH~~~~l~--~~~--~~~l~~~~~--------~~~~l~~~~~~ 114 (301)
T cd06565 54 RGAYTKEEI-------REIDDYAAELGIEVIPLIQTLGHLEFILK--HPE--FRHLREVDD--------PPQTLCPGEPK 114 (301)
T ss_pred CCCcCHHHH-------HHHHHHHHHcCCEEEecCCCHHHHHHHHh--Ccc--cccccccCC--------CCCccCCCChh
Confidence 566665443 568999999999866 3334688766554 342 222222221 13569999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccccCCCCCCCCCC--------CChhHHHHHHHHHHHHHhccCCCceEEEecccCCCCC
Q 008173 87 FIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPPV--------DSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDP 158 (575)
Q Consensus 87 F~~i~~~F~~~q~~~yG~~~h~Y~~DpFnE~~pp~--------~d~~~L~~~~~~v~~am~~~dP~AvWvmQgW~F~~~~ 158 (575)
=-++-+..++|..++|...-=.-++|=+++.+... +..+-....-+.|.+-+++..+ -++.|- |-
T Consensus 115 t~~fi~~li~ev~~~f~s~~~HIG~DE~~~~g~~~~~~~~~~~~~~~l~~~~~~~v~~~v~~~g~----~~~~W~---D~ 187 (301)
T cd06565 115 TYDFIEEMIRQVLELHPSKYIHIGMDEAYDLGRGRSLRKHGNLGRGELYLEHLKKVLKIIKKRGP----KPMMWD---DM 187 (301)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEECCCcccccCCCHHHHHhcCCCHHHHHHHHHHHHHHHHHHcCC----EEEEEh---HH
Confidence 99999999999999997321125778776543211 1111123334456666677766 356671 11
Q ss_pred CCCchhHHHhhhCCCCCCEEEEecCCCcc-ccc----ccccCCCCCCceee-eccCCCCccccccchhhhhcChHHhhhC
Q 008173 159 FWRPPQMKALLNSVPLGKLVVLDLFAEVK-PIW----STSKQFYGVPYIWC-MLHNFAGNIEMYGILDSIAFGPVEARTS 232 (575)
Q Consensus 159 fW~~~~~~a~L~~Vp~~~mliLDL~~E~~-p~W----~~~~~f~G~pwIWc-~L~NFGGn~gl~G~l~~i~~~~~~a~~~ 232 (575)
+..-+.....+..+|++ +|+-.|.-.. ... .+.-.-.|.+++-| -.++|.|-+ ++++.-..+...+...
T Consensus 188 ~~~~~~~~~~~~~l~~~--v~~~~W~y~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~---~~~~~~~~n~~~~~~~ 262 (301)
T cd06565 188 LRKLSIEPEALSGLPKL--VTPVVWDYYADLDEHDRPIGLWKKYGSVFAVAWGASAWKGAT---PPNDKHLENIKSWLKA 262 (301)
T ss_pred hcCCCCChHHHhCCCCC--eEEEEecCcCCcchhhHhHHHHHHhCCCceEeeeechhccCC---CCHHHHHHHHHHHHHH
Confidence 11100012345677876 3333333211 111 11111245555444 555665554 4443333333333322
Q ss_pred C-CCceEEeeeCc
Q 008173 233 E-NTTMVGVGMSM 244 (575)
Q Consensus 233 ~-~~~m~GiG~tp 244 (575)
. .....|+=+|.
T Consensus 263 ~~~~~~~G~~~T~ 275 (301)
T cd06565 263 AKKNGVQGILLTG 275 (301)
T ss_pred HHHCCCCEEEEEe
Confidence 1 23466766664
No 16
>COG1422 Predicted membrane protein [Function unknown]
Probab=43.05 E-value=74 Score=32.02 Aligned_cols=65 Identities=22% Similarity=0.198 Sum_probs=52.2
Q ss_pred cchHHHH-HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHH
Q 008173 385 RYDLIDL-TRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWL 449 (575)
Q Consensus 385 ~yDLvDv-tRQvL~n~~~~~~~~~~~Ay~~kd~~~~~~~~~~~l~li~dlD~LL~t~~~flLg~Wl 449 (575)
++=+||- .-+-+.+.++++..++.+|++++|..+++++-++=.++.+|+-+|+.-+-.=++=.|+
T Consensus 65 ~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qfkPM~~~~v 130 (201)
T COG1422 65 QKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQFKPMLYISV 130 (201)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3445553 3467889999999999999999999999999999999999999988766554444444
No 17
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=42.24 E-value=1.4e+02 Score=31.57 Aligned_cols=105 Identities=15% Similarity=0.184 Sum_probs=59.2
Q ss_pred HHHHHHHHHcCCeecc---CCCCCCCchhhHhh--------CCCCceeccCCCCCCCCCCccccccccCCCChHHHHHHH
Q 008173 24 KKILVRIYELGMNPVL---PAFSGNVPAALQNV--------FPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGR 92 (575)
Q Consensus 24 ~kIl~RmreLGM~PVL---PgF~G~VP~~~~~~--------~P~a~i~~~~~W~gf~~~~~~~~~~~LdP~DplF~~i~~ 92 (575)
+++++.+++.|++.|+ |++.--.+.-+++. .++-+......|.+. +.++|.++|. |+
T Consensus 74 ~~mi~~Lh~~G~~~~~~i~P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~--------~~~~Dftnp~----a~ 141 (317)
T cd06594 74 DELIEELKARGIRVLTYINPYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFD--------CGVLDLTNPA----AR 141 (317)
T ss_pred HHHHHHHHHCCCEEEEEecCceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCC--------ceeeecCCHH----HH
Confidence 6889999999999875 44432122212322 111112222335443 3589999988 44
Q ss_pred HHHHHHHH----HhCCCCcccccCCCCCCCCCCC------C-----hhHHHHHHHHHHHHHhccCC
Q 008173 93 AFIEQQLK----EYGRTSHIYNCDTFDENTPPVD------S-----PEYISSLGAAIYSGMQSGDS 143 (575)
Q Consensus 93 ~F~~~q~~----~yG~~~h~Y~~DpFnE~~pp~~------d-----~~~L~~~~~~v~~am~~~dP 143 (575)
.++.++.+ ..| . ..+-.| |+|..|+.. + ..|--..++++|++++++.|
T Consensus 142 ~ww~~~~~~~~~~~G-v-dg~w~D-~~E~~p~d~~~~~g~~~~~~hN~y~~~~~~~~~~~~~~~~~ 204 (317)
T cd06594 142 DWFKQVIKEMLLDLG-L-SGWMAD-FGEYLPFDAVLHSGEDAATMHNRYPELWAKLNREAVEEAGK 204 (317)
T ss_pred HHHHHHHHHHhhhcC-C-cEEEec-CCCCCCCcceecCCCCHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 44433333 246 3 455667 788766532 1 12455678888888887754
No 18
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=39.60 E-value=62 Score=36.53 Aligned_cols=71 Identities=17% Similarity=0.421 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHcCCeeccCCCCCCCchhhHhhCCCCceeccCCCCCCCCCCccccccccCCCChHHHHHHHHHHHHHH
Q 008173 20 LVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQL 99 (575)
Q Consensus 20 ~~LQ~kIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gf~~~~~~~~~~~LdP~DplF~~i~~~F~~~q~ 99 (575)
.+-=+++++.+++.||+|++==|-=-.|..|.++| |.|.+ +.++ ..|.+.|+ ..-
T Consensus 109 l~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~y--------GGW~n---------~~~~----~~F~~Ya~----~~f 163 (477)
T PRK15014 109 LKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQY--------GSWTN---------RKVV----DFFVRFAE----VVF 163 (477)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhc--------CCCCC---------hHHH----HHHHHHHH----HHH
Confidence 34447999999999999998776667888887655 44633 1111 34555444 445
Q ss_pred HHhCCCCcccccCCCCCC
Q 008173 100 KEYGRTSHIYNCDTFDEN 117 (575)
Q Consensus 100 ~~yG~~~h~Y~~DpFnE~ 117 (575)
+.||+.-+++. +|||.
T Consensus 164 ~~fgdrVk~Wi--T~NEp 179 (477)
T PRK15014 164 ERYKHKVKYWM--TFNEI 179 (477)
T ss_pred HHhcCcCCEEE--EecCc
Confidence 67886555555 88884
No 19
>PF03705 CheR_N: CheR methyltransferase, all-alpha domain; InterPro: IPR022641 CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the N-terminal domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF01739 from PFAM. Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region [].; PDB: 1AF7_A 1BC5_A.
Probab=37.17 E-value=27 Score=27.01 Aligned_cols=20 Identities=20% Similarity=0.529 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHcCCee
Q 008173 18 QQLVLQKKILVRIYELGMNP 37 (575)
Q Consensus 18 ~q~~LQ~kIl~RmreLGM~P 37 (575)
++.-|++||..||+++|+.-
T Consensus 24 K~~~l~rRl~~rm~~~~~~~ 43 (57)
T PF03705_consen 24 KRSLLERRLARRMRALGLPS 43 (57)
T ss_dssp GHHHHHHHHHHHHHHHT---
T ss_pred hHHHHHHHHHHHHHHcCCCC
Confidence 46789999999999999864
No 20
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=33.87 E-value=1.2e+02 Score=32.62 Aligned_cols=93 Identities=16% Similarity=0.283 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHcCCee-----ccCCCCCCCchhhHh-hCCCCceeccCCCCCCCCCCccccccccCCCChHHHHHHHHH
Q 008173 21 VLQKKILVRIYELGMNP-----VLPAFSGNVPAALQN-VFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAF 94 (575)
Q Consensus 21 ~LQ~kIl~RmreLGM~P-----VLPgF~G~VP~~~~~-~~P~a~i~~~~~W~gf~~~~~~~~~~~LdP~DplF~~i~~~F 94 (575)
+....||+..+++||.. ||-+. |+--..+.+ ++-.++|+. | .+++|.+|.+.++-..|
T Consensus 189 ~~~~~il~qa~~~gm~~~~y~~il~~~-~~~~~~l~~~~~g~~nitg------~---------~~~~~~~~~v~~~~~~~ 252 (371)
T cd06388 189 ERLQNILEQIVSVGKHVKGYHYIIANL-GFKDISLERFMHGGANVTG------F---------QLVDFNTPMVTKLMQRW 252 (371)
T ss_pred HHHHHHHHHHHhcCccccceEEEEccC-ccccccHHHHhccCCceEE------E---------EeecCCChhHHHHHHHH
Confidence 34578999999999986 66443 443334433 244444432 2 24688888888777777
Q ss_pred HHHHHHHhCCCCcccccCCCCCCCCCCCChhHHHHHHHHHHHHHhc
Q 008173 95 IEQQLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQS 140 (575)
Q Consensus 95 ~~~q~~~yG~~~h~Y~~DpFnE~~pp~~d~~~L~~~~~~v~~am~~ 140 (575)
-+..++.| ++.+ .+|.....+.-++...+.++|++
T Consensus 253 ~~~~~~~~------~~~~-----~~~~~~aAl~YDaV~l~a~A~~~ 287 (371)
T cd06388 253 KKLDQREY------PGSE-----SPPKYTSALTYDGVLVMAEAFRN 287 (371)
T ss_pred HhcCcccc------CCCC-----CCccchHHHHHHHHHHHHHHHHH
Confidence 55444444 1222 13444444555555555566654
No 21
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=33.44 E-value=1.1e+02 Score=28.53 Aligned_cols=43 Identities=12% Similarity=0.200 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcc
Q 008173 397 AKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLAC 439 (575)
Q Consensus 397 ~n~~~~~~~~~~~Ay~~kd~~~~~~~~~~~l~li~dlD~LL~t 439 (575)
...+..+|.++..=.++++.+.-+...+++++-+.-||..|+.
T Consensus 5 ~~~~~~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~ 47 (134)
T cd03198 5 NTAGEDIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNS 47 (134)
T ss_pred hhhHHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHcc
Confidence 3466788999988888888888888899999999999999986
No 22
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=32.41 E-value=93 Score=33.23 Aligned_cols=67 Identities=16% Similarity=0.245 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCCeeccCCCC--CCCch--hhHh-hCCCCceeccCCCCCCCCCCccccccccCCCChHHHHHHHHHH
Q 008173 21 VLQKKILVRIYELGMNPVLPAFS--GNVPA--ALQN-VFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFI 95 (575)
Q Consensus 21 ~LQ~kIl~RmreLGM~PVLPgF~--G~VP~--~~~~-~~P~a~i~~~~~W~gf~~~~~~~~~~~LdP~DplF~~i~~~F~ 95 (575)
+...+|++.++++||..-.-+|- |.-.. .|.+ .+|.++|+. |. +.||++|...++-+.|-
T Consensus 197 ~~a~~il~qa~~lGm~~~~y~~i~T~l~~~~~~L~~~~~~~~niTg------F~---------l~d~~~~~v~~f~~~~~ 261 (333)
T cd06394 197 SMSHTILLKASELGMTSAFYKYILTTMDFPLLRLDSIVDDRSNILG------FS---------MFNQSHAFYQEFIRSLN 261 (333)
T ss_pred HHHHHHHHHHHHcCCCCCceEEEEecCCcccccHHHhhcCCcceEE------EE---------eecCCcHHHHHHHHHHH
Confidence 45678999999999987776666 66666 4433 355555433 42 58999999988888777
Q ss_pred HHHHHHh
Q 008173 96 EQQLKEY 102 (575)
Q Consensus 96 ~~q~~~y 102 (575)
+...+.+
T Consensus 262 ~~~~~~~ 268 (333)
T cd06394 262 QSWRENC 268 (333)
T ss_pred Hhhhhhc
Confidence 6655443
No 23
>PF10629 DUF2475: Protein of unknown function (DUF2475); InterPro: IPR018902 This entry represents both UPF0573 and UPF0605 families. Both these families of proteins have no known function.
Probab=31.77 E-value=21 Score=29.97 Aligned_cols=12 Identities=33% Similarity=0.933 Sum_probs=10.1
Q ss_pred ccCCCCCCCchh
Q 008173 38 VLPAFSGNVPAA 49 (575)
Q Consensus 38 VLPgF~G~VP~~ 49 (575)
.+|||+||||..
T Consensus 4 ~iPgY~G~vP~~ 15 (71)
T PF10629_consen 4 MIPGYTGYVPGY 15 (71)
T ss_pred CCCCccCcCCcc
Confidence 379999999984
No 24
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=29.56 E-value=78 Score=26.93 Aligned_cols=53 Identities=13% Similarity=0.232 Sum_probs=34.8
Q ss_pred HHHhCCCCcccccCCCCC-CCCCC-------C--ChhHHHHHHHHHHHHHhccCCCceEEEecc
Q 008173 99 LKEYGRTSHIYNCDTFDE-NTPPV-------D--SPEYISSLGAAIYSGMQSGDSDAVWLMQGW 152 (575)
Q Consensus 99 ~~~yG~~~h~Y~~DpFnE-~~pp~-------~--d~~~L~~~~~~v~~am~~~dP~AvWvmQgW 152 (575)
.+.||....+=.-|.+|| -.+.. . ..+.+...-+.+.+.|+++||..- |.-|.
T Consensus 2 v~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~p-vt~g~ 64 (88)
T PF12876_consen 2 VTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQP-VTSGF 64 (88)
T ss_dssp HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS--EE--B
T ss_pred chhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCc-EEeec
Confidence 356888888999999999 33111 1 235677788899999999999887 55554
No 25
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=28.92 E-value=58 Score=33.76 Aligned_cols=76 Identities=20% Similarity=0.280 Sum_probs=40.9
Q ss_pred HHHHHHHHcCCe-eccCCCCCCCchh-hHhhCCCCceeccCCCCCCCCCCccccccccC-CCCh-----HHHHHHHHHHH
Q 008173 25 KILVRIYELGMN-PVLPAFSGNVPAA-LQNVFPSAKITQLGNWFSVKSDPRWCCTYLLD-ATDP-----LFIEIGRAFIE 96 (575)
Q Consensus 25 kIl~RmreLGM~-PVLPgF~G~VP~~-~~~~~P~a~i~~~~~W~gf~~~~~~~~~~~Ld-P~Dp-----lF~~i~~~F~~ 96 (575)
+.++++|+.|++ ||+||+.+..-.. +.+ + ..|+|..=+..+. --+-. ..|+ .--+++...++
T Consensus 174 ~~~~~~~~~gi~~PIi~Gi~p~~s~k~~~~-~--------~~~~Gv~vP~~~~-~~l~~~~~~~~~~~~~gi~~~~~~~~ 243 (272)
T TIGR00676 174 RFVDRCRAAGIDVPIIPGIMPITNFKQLLR-F--------AERCGAEIPAWLV-KRLEKYDDDPEEVRAVGIEYATDQCE 243 (272)
T ss_pred HHHHHHHHcCCCCCEecccCCcCCHHHHHH-H--------HhccCCCCCHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 457889999876 8888888776655 222 2 1265654221111 11222 2332 45556666666
Q ss_pred HHHHHhCC-CCccccc
Q 008173 97 QQLKEYGR-TSHIYNC 111 (575)
Q Consensus 97 ~q~~~yG~-~~h~Y~~ 111 (575)
+..+ .|- --|+|++
T Consensus 244 ~l~~-~g~~GiHl~t~ 258 (272)
T TIGR00676 244 DLIA-EGVPGIHFYTL 258 (272)
T ss_pred HHHH-CCCCEEEEcCC
Confidence 6654 341 1388874
No 26
>TIGR03356 BGL beta-galactosidase.
Probab=28.01 E-value=3.4e+02 Score=30.16 Aligned_cols=103 Identities=16% Similarity=0.265 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeccCCCCCCCchhhHhhCCCCceeccCCCCCCCCCCccccccccCCCChHHHHHHHHH
Q 008173 15 WLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAF 94 (575)
Q Consensus 15 wi~~q~~LQ~kIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gf~~~~~~~~~~~LdP~DplF~~i~~~F 94 (575)
+-++..+-=+++|+.+++.||+||+==+-=-+|..|.++ |.|.+ +.+. ..|.+.++..
T Consensus 88 ~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~---------gGw~~---------~~~~----~~f~~ya~~~ 145 (427)
T TIGR03356 88 VNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR---------GGWLN---------RDTA----EWFAEYAAVV 145 (427)
T ss_pred cCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc---------CCCCC---------hHHH----HHHHHHHHHH
Confidence 334445556799999999999999766555577776541 33422 1111 4666666665
Q ss_pred HHHHHHHhCCCCcccccCCCCCCC------------CCCCC-h-------hHHHHHHHHHHHHHhccCCCc
Q 008173 95 IEQQLKEYGRTSHIYNCDTFDENT------------PPVDS-P-------EYISSLGAAIYSGMQSGDSDA 145 (575)
Q Consensus 95 ~~~q~~~yG~~~h~Y~~DpFnE~~------------pp~~d-~-------~~L~~~~~~v~~am~~~dP~A 145 (575)
. +.||+.-.++ =+|||.. ||... . ..+-.+..++++.+++.+|++
T Consensus 146 ~----~~~~d~v~~w--~t~NEp~~~~~~~y~~G~~~P~~~~~~~~~~~~hnll~Aha~A~~~~~~~~~~~ 210 (427)
T TIGR03356 146 A----ERLGDRVKHW--ITLNEPWCSAFLGYGLGVHAPGLRDLRAALQAAHHLLLAHGLAVQALRANGPGA 210 (427)
T ss_pred H----HHhCCcCCEE--EEecCcceecccchhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5 6788644556 4899953 44211 1 123344556678888888864
No 27
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=27.00 E-value=95 Score=24.29 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCChH
Q 008173 418 GVFQLSRRFLELVEDMDGLLACHDGFLLG 446 (575)
Q Consensus 418 ~~~~~~~~~l~li~dlD~LL~t~~~flLg 446 (575)
..++.-+++.+.++.+|.+|+.++ |++|
T Consensus 3 ~~~~~~~~~~~~l~~le~~L~~~~-fl~G 30 (69)
T PF13410_consen 3 AVERARAQLEAALDALEDHLADGP-FLFG 30 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSS-BTTB
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCC-CCCC
Confidence 456777889999999999999998 7776
No 28
>TIGR00825 EIIBC-GUT PTS system, glucitol/sorbitol-specific, IIBC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria.E. coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIBC component.
Probab=26.80 E-value=13 Score=39.24 Aligned_cols=42 Identities=29% Similarity=0.616 Sum_probs=30.3
Q ss_pred CCCCCCCCHHHHHHHHHH------HHHHHHHHHHc-CCeeccCCCCCCCc
Q 008173 5 HGWGGPLPQSWLDQQLVL------QKKILVRIYEL-GMNPVLPAFSGNVP 47 (575)
Q Consensus 5 ~gwgGPLp~~wi~~q~~L------Q~kIl~RmreL-GM~PVLPgF~G~VP 47 (575)
.||||||--.=-++++-+ -+-|.+|+.|| ||++| -||--.||
T Consensus 10 gGwGGPL~i~pt~~KKivyiTGG~~p~i~~kiaeLTG~eaV-dGFk~~~p 58 (331)
T TIGR00825 10 GGWGGPLTVKPTEGKKIVYITAGTEPAIVDKLVNLTGWKAV-DGFKTGEP 58 (331)
T ss_pred CCcCCCEEEecCCCeEEEEEcCCCCCHHHHHHHHhhCCeec-ccccCCCC
Confidence 479999854333333111 45688999999 99987 78988898
No 29
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.49 E-value=4.3e+02 Score=27.91 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCCeecc---CCCCCCCchhhHhhCCCC--------ceeccC-CCCCCCCCCccccccccCCCChHHHHH
Q 008173 23 QKKILVRIYELGMNPVL---PAFSGNVPAALQNVFPSA--------KITQLG-NWFSVKSDPRWCCTYLLDATDPLFIEI 90 (575)
Q Consensus 23 Q~kIl~RmreLGM~PVL---PgF~G~VP~~~~~~~P~a--------~i~~~~-~W~gf~~~~~~~~~~~LdP~DplF~~i 90 (575)
=+++++++++.|++-|+ |.....-| .+++.-..- +....+ .|.|. ..++|-+.|-..+.
T Consensus 75 p~~mi~~L~~~g~k~~~~i~P~i~~~~~-~y~e~~~~g~~v~~~~g~~~~~~~~w~g~--------~~~~Dftnp~a~~w 145 (317)
T cd06599 75 PAAFVAKFHERGIRLAPNIKPGLLQDHP-RYKELKEAGAFIKPPDGREPSIGQFWGGV--------GSFVDFTNPEGREW 145 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeCCcccCCCH-HHHHHHHCCcEEEcCCCCCcceecccCCC--------eEeecCCChHHHHH
Confidence 45889999999999886 44432222 233322111 111112 24442 35799999875544
Q ss_pred HHHHHHHHHHHhCCCCcccccCCCCCC
Q 008173 91 GRAFIEQQLKEYGRTSHIYNCDTFDEN 117 (575)
Q Consensus 91 ~~~F~~~q~~~yG~~~h~Y~~DpFnE~ 117 (575)
=..-++++....| . ..+-+| ++|.
T Consensus 146 w~~~~~~~~~~~G-v-dg~w~D-~~E~ 169 (317)
T cd06599 146 WKEGVKEALLDLG-I-DSTWND-NNEY 169 (317)
T ss_pred HHHHHHHHHhcCC-C-cEEEec-CCCC
Confidence 3333333333346 3 566666 5664
No 30
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=26.45 E-value=2.3e+02 Score=30.28 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCCeec----cCCCCCCCchhhHh-hCCCCceeccCCCCCCCCCCccccccccCCCChHHHHHHHHH
Q 008173 21 VLQKKILVRIYELGMNPV----LPAFSGNVPAALQN-VFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAF 94 (575)
Q Consensus 21 ~LQ~kIl~RmreLGM~PV----LPgF~G~VP~~~~~-~~P~a~i~~~~~W~gf~~~~~~~~~~~LdP~DplF~~i~~~F 94 (575)
+.-..|++.++++||++- +-+-.|+--..|.+ ++..++|+ || .+.+|.+|...++-+.|
T Consensus 187 ~~~~~il~qa~~~gm~~~~y~~il~~~~~~~~~l~~~~~~~~nit------g~---------~~~~~~~~~v~~f~~~~ 250 (370)
T cd06389 187 DKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLSKIQFGGANVS------GF---------QIVDYDDPLVSKFIQRW 250 (370)
T ss_pred HHHHHHHHHHHHhCccccceEEEEccCCccccchhhhccCCcceE------EE---------EEecCCCchHHHHHHHH
Confidence 345689999999999976 22333554334532 24555543 23 25788888876666655
No 31
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=24.64 E-value=3.2e+02 Score=28.24 Aligned_cols=106 Identities=16% Similarity=0.196 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHcCCeeccCCCCCCCchh-----hHhhCCCCceeccC-----CCCCCCCCCccccccccCCCChHHHHHH
Q 008173 22 LQKKILVRIYELGMNPVLPAFSGNVPAA-----LQNVFPSAKITQLG-----NWFSVKSDPRWCCTYLLDATDPLFIEIG 91 (575)
Q Consensus 22 LQ~kIl~RmreLGM~PVLPgF~G~VP~~-----~~~~~P~a~i~~~~-----~W~gf~~~~~~~~~~~LdP~DplF~~i~ 91 (575)
..++=+..|+++|+.-|=- .|.|.. +.+++-=.-+.+.. .|..+. ..-....||.|.+..
T Consensus 37 ~~~~d~~l~k~~G~N~iR~---~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 106 (298)
T PF02836_consen 37 AMERDLELMKEMGFNAIRT---HHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFG-------NCNYDADDPEFRENA 106 (298)
T ss_dssp HHHHHHHHHHHTT-SEEEE---TTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTS-------CTSCTTTSGGHHHHH
T ss_pred HHHHHHHHHHhcCcceEEc---ccccCcHHHHHHHhhcCCEEEEeccccccCccccCC-------ccccCCCCHHHHHHH
Confidence 4445567899999998864 333432 34444222222322 232221 012466899999999
Q ss_pred HHHHHHHHHHhCCCCcccccCCCCCCCCCCCChhHHHHHHHHHHHHHhccCCCc
Q 008173 92 RAFIEQQLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDA 145 (575)
Q Consensus 92 ~~F~~~q~~~yG~~~h~Y~~DpFnE~~pp~~d~~~L~~~~~~v~~am~~~dP~A 145 (575)
..=++++.+.+-+.-.+-.=-.+||+ ......+.+++.+++.||.-
T Consensus 107 ~~~~~~~v~~~~NHPSIi~W~~gNE~--------~~~~~~~~l~~~~k~~DptR 152 (298)
T PF02836_consen 107 EQELREMVRRDRNHPSIIMWSLGNES--------DYREFLKELYDLVKKLDPTR 152 (298)
T ss_dssp HHHHHHHHHHHTT-TTEEEEEEEESS--------HHHHHHHHHHHHHHHH-TTS
T ss_pred HHHHHHHHHcCcCcCchheeecCccC--------ccccchhHHHHHHHhcCCCC
Confidence 99999999988855456666677999 23455678889999999975
No 32
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=24.29 E-value=3.5e+02 Score=28.86 Aligned_cols=115 Identities=15% Similarity=0.125 Sum_probs=58.5
Q ss_pred CCCCCC----CCHHHHHHH-HHHHHHHHHHHHHcCCeeccCCCCCCC-----------------------chhhHhhCCC
Q 008173 5 HGWGGP----LPQSWLDQQ-LVLQKKILVRIYELGMNPVLPAFSGNV-----------------------PAALQNVFPS 56 (575)
Q Consensus 5 ~gwgGP----Lp~~wi~~q-~~LQ~kIl~RmreLGM~PVLPgF~G~V-----------------------P~~~~~~~P~ 56 (575)
+.|+|= ||.+.+++= .---|||++..++.|-.||.-=.+|.. +..+++++++
T Consensus 177 Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~piilH~cG~~~~~l~~~~e~g~dvl~~d~~~~dl~eak~~~g~ 256 (321)
T cd03309 177 DDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSALIVHHSCGAAASLVPSMAEMGVDSWNVVMTANNTAELRRLLGD 256 (321)
T ss_pred CCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCceEEEeCCCcHHHHHHHHHcCCCEEEecCCCCCHHHHHHHhCC
Confidence 457765 777777543 234577777777774344444445543 1123344432
Q ss_pred CceeccCCCCCCCCCCccccccccCCCChHHHHHHHHHHHHHHHHhCC-CCcccccCCCCCCCCCCCChhHHHHHHHHHH
Q 008173 57 AKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGR-TSHIYNCDTFDENTPPVDSPEYISSLGAAIY 135 (575)
Q Consensus 57 a~i~~~~~W~gf~~~~~~~~~~~LdP~DplF~~i~~~F~~~q~~~yG~-~~h~Y~~DpFnE~~pp~~d~~~L~~~~~~v~ 135 (575)
+++=+| ++. |.+|..... .+.-+...++..+.+|. ..+++.-+ .+. |.+..|+.+..+++.++
T Consensus 257 -k~~l~G---NlD-------p~~L~~~~t--~E~i~~~v~~~l~~~g~~~~fIf~~~--~~~-~~~~~~~~~~~~~~~~~ 320 (321)
T cd03309 257 -KVVLAG---AID-------DVALDTATW--PEEDARGVAKAAAECAPIHPFISAPT--AGL-PFSIFPEVLRRVSAFLD 320 (321)
T ss_pred -CeEEEc---CCC-------hHHhcCCCC--HHHHHHHHHHHHHHhCCCCCEEeCcc--CCC-CcccCHHHHHHHHHhhc
Confidence 122222 222 223332221 35556667777777774 34454443 444 22334667777776654
No 33
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=23.51 E-value=5.9e+02 Score=27.30 Aligned_cols=85 Identities=22% Similarity=0.287 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCeecc---CCCC-CCCch---------hhHhh----CCCCceecc-CCCCCCCCCCccccccccCCCCh
Q 008173 24 KKILVRIYELGMNPVL---PAFS-GNVPA---------ALQNV----FPSAKITQL-GNWFSVKSDPRWCCTYLLDATDP 85 (575)
Q Consensus 24 ~kIl~RmreLGM~PVL---PgF~-G~VP~---------~~~~~----~P~a~i~~~-~~W~gf~~~~~~~~~~~LdP~Dp 85 (575)
++.++++.+.|++-+| |... +..|. +.++- .++-+.... +.|.|- +.++|-++|
T Consensus 88 ~~mi~~Lh~~G~kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~--------~~~~Dftnp 159 (340)
T cd06597 88 KGMIDELHEQGVKVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPD--------SLMLDFTNP 159 (340)
T ss_pred HHHHHHHHHCCCEEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCC--------ceeecCCCH
Confidence 6889999999999875 6553 21111 11110 011111111 346442 468999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccccCCCCCCCC
Q 008173 86 LFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTP 119 (575)
Q Consensus 86 lF~~i~~~F~~~q~~~yG~~~h~Y~~DpFnE~~p 119 (575)
.-.+-=+.-++.+.+.+| . .-+-+| ++|..+
T Consensus 160 ~a~~Ww~~~~~~~~~~~G-i-dg~w~D-~~E~~~ 190 (340)
T cd06597 160 EAAQWWMEKRRYLVDELG-I-DGFKTD-GGEHVW 190 (340)
T ss_pred HHHHHHHHHHHHHHHhcC-C-cEEEec-CCCccC
Confidence 855532222232333467 4 566677 778653
No 34
>COG5005 Mu-like prophage protein gpG [General function prediction only]
Probab=22.94 E-value=24 Score=33.11 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=29.7
Q ss_pred CCEEEE--ecCCCcccccccccCCCCCCceeeeccCCCCccccc
Q 008173 175 GKLVVL--DLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMY 216 (575)
Q Consensus 175 ~~mliL--DL~~E~~p~W~~~~~f~G~pwIWc~L~NFGGn~gl~ 216 (575)
|+.|.+ +|..-.++.+...-+--|+.=-+..+|||||.+|+-
T Consensus 62 Gk~L~~~GrL~~sltt~y~n~~AlvGtne~YaaiHqfGG~~gr~ 105 (140)
T COG5005 62 GKILQDSGRLAGSLTTDYGNNTALVGTNEEYAAIHQFGGKTGRP 105 (140)
T ss_pred CCceeecchhhhcccccCCCceeeecccchhHHHHHhcCcCCCC
Confidence 455544 233334666666667788888899999999999953
No 35
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=22.45 E-value=58 Score=21.33 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHcCCee
Q 008173 19 QLVLQKKILVRIYELGMNP 37 (575)
Q Consensus 19 q~~LQ~kIl~RmreLGM~P 37 (575)
+.+-..+++++|++.|+.|
T Consensus 15 ~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 15 RVEEALELFKEMLERGIEP 33 (35)
T ss_pred CHHHHHHHHHHHHHcCCCC
Confidence 4556789999999999887
No 36
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=21.88 E-value=1e+03 Score=25.70 Aligned_cols=159 Identities=18% Similarity=0.249 Sum_probs=92.1
Q ss_pred CCCCHHHHHHHHHHHHH---------------------HHHHHHHcCC-----eeccCCCCCCCchh-hHhhCCCCceec
Q 008173 9 GPLPQSWLDQQLVLQKK---------------------ILVRIYELGM-----NPVLPAFSGNVPAA-LQNVFPSAKITQ 61 (575)
Q Consensus 9 GPLp~~wi~~q~~LQ~k---------------------Il~RmreLGM-----~PVLPgF~G~VP~~-~~~~~P~a~i~~ 61 (575)
.||-.---.++.+|+++ .++.|++-|. -|..|=|+-.+=.+ +++.. .| +..
T Consensus 69 sPL~~~T~~q~~~L~~~L~~~~~~V~~amry~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~-~a-l~~ 146 (320)
T COG0276 69 SPLNVITRAQAAALEERLDLPDFKVYLAMRYGPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELA-RA-LKE 146 (320)
T ss_pred CccHHHHHHHHHHHHHHhCCCCccEEEeecCCCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHH-HH-HHh
Confidence 48866666667778876 5789999998 46677777766643 22111 11 111
Q ss_pred cCCCCCCCCCCccccccccC--CCChHHHHHHHHHHHHHHHHhCCCCcccccCCCCCCC---CCCCChhHHHHHH---HH
Q 008173 62 LGNWFSVKSDPRWCCTYLLD--ATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENT---PPVDSPEYISSLG---AA 133 (575)
Q Consensus 62 ~~~W~gf~~~~~~~~~~~Ld--P~DplF~~i~~~F~~~q~~~yG~~~h~Y~~DpFnE~~---pp~~d~~~L~~~~---~~ 133 (575)
.+.+-.+ .+++ +++|+|-+.=..=+++-.+.+| -++..-+=.||=.- --.+|| |..++- +.
T Consensus 147 ~~~~~~i---------~~I~~~~~~p~yI~a~a~~I~~~~~~~~-~~~~~llfSaHglP~~~~~~GDp-Y~~q~~~t~~l 215 (320)
T COG0276 147 LRGQPKI---------STIPDYYDEPLYIEALADSIREKLAKHP-RDDDVLLFSAHGLPKRYIDEGDP-YPQQCQETTRL 215 (320)
T ss_pred cCCCCce---------EEecCccCChHHHHHHHHHHHHHHHhcC-CCCeEEEEecCCCchhhhhcCCc-hHHHHHHHHHH
Confidence 1111111 1233 3788888887777888778887 34555555566220 001233 555544 44
Q ss_pred HHHHHhccCCCceEEEecccCCCCCCCCchhHHHhhhCCCCC---CEEEEec
Q 008173 134 IYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLG---KLVVLDL 182 (575)
Q Consensus 134 v~~am~~~dP~AvWvmQgW~F~~~~fW~~~~~~a~L~~Vp~~---~mliLDL 182 (575)
|-+.+.--.++-+..-|+ -|..-+ |-.|.+...|..+++. +++|.=.
T Consensus 216 i~e~lg~~~~~~~~~~QS-~~G~~~-WL~P~t~~~l~~L~~~g~k~iiv~pi 265 (320)
T COG0276 216 IAEALGLPEEEYDLTFQS-RFGPEP-WLQPYTDDLLEELGEKGVKKIIVVPI 265 (320)
T ss_pred HHHHcCCCchheeEEeec-CCCCCC-CCCCCHHHHHHHHHhcCCCeEEEECC
Confidence 444444334455555566 444433 9888889999888864 7887643
No 37
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=21.83 E-value=3.3e+02 Score=19.92 Aligned_cols=29 Identities=24% Similarity=0.212 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 008173 398 KYANELFLNIIEAYQLNDAHGVFQLSRRF 426 (575)
Q Consensus 398 n~~~~~~~~~~~Ay~~kd~~~~~~~~~~~ 426 (575)
..-..++.+|-.|-..+|.+.|.+++.++
T Consensus 9 ~~~~~L~~~ID~ALd~~D~e~F~~Ls~eL 37 (37)
T PF08858_consen 9 FRKEQLLELIDEALDNRDKEWFYELSEEL 37 (37)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Confidence 34457889999999999999999998764
No 38
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=20.54 E-value=3.4e+02 Score=28.66 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHcCCee
Q 008173 21 VLQKKILVRIYELGMNP 37 (575)
Q Consensus 21 ~LQ~kIl~RmreLGM~P 37 (575)
+-..+|++.++++||.+
T Consensus 194 ~~~~~i~~qa~~~gm~~ 210 (382)
T cd06380 194 ERLNKILEQIVDVGKNR 210 (382)
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 44578999999999995
Done!