Query 008174
Match_columns 575
No_of_seqs 244 out of 974
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 20:25:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1363 Predicted regulator of 100.0 5.7E-41 1.2E-45 359.3 22.5 444 30-575 2-460 (460)
2 cd01773 Faf1_like1_UBX Faf1 ik 99.8 1.9E-20 4.1E-25 160.1 10.4 79 494-574 2-80 (82)
3 cd01771 Faf1_UBX Faf1 UBX doma 99.8 1.8E-20 3.9E-25 159.0 10.1 78 495-574 2-79 (80)
4 cd01774 Faf1_like2_UBX Faf1 ik 99.8 1.2E-19 2.7E-24 155.5 10.2 79 495-575 2-85 (85)
5 cd01772 SAKS1_UBX SAKS1-like U 99.8 3.5E-19 7.7E-24 150.0 9.7 78 495-574 2-79 (79)
6 smart00166 UBX Domain present 99.8 3.8E-19 8.3E-24 149.1 9.9 78 496-574 3-80 (80)
7 cd01767 UBX UBX (ubiquitin reg 99.8 3.9E-18 8.5E-23 141.9 10.0 75 497-574 2-76 (77)
8 PF00789 UBX: UBX domain; Int 99.8 2.6E-18 5.5E-23 143.6 8.4 79 494-574 3-82 (82)
9 cd01770 p47_UBX p47-like ubiqu 99.7 7.3E-17 1.6E-21 136.6 10.1 75 496-574 3-78 (79)
10 KOG2689 Predicted ubiquitin re 99.7 1.8E-15 4E-20 152.9 16.6 80 495-575 208-287 (290)
11 KOG2507 Ubiquitin regulatory p 99.5 2.1E-14 4.5E-19 152.1 10.9 78 496-573 313-390 (506)
12 KOG1364 Predicted ubiquitin re 99.4 4E-12 8.6E-17 132.6 16.5 75 496-571 276-351 (356)
13 PF14555 UBA_4: UBA-like domai 99.3 4.5E-12 9.7E-17 95.9 5.7 42 6-47 1-42 (43)
14 KOG2086 Protein tyrosine phosp 99.0 7.5E-10 1.6E-14 117.1 6.5 76 486-566 297-373 (380)
15 cd01806 Nedd8 Nebb8-like ubiq 97.0 0.0035 7.6E-08 51.0 7.8 69 499-573 2-70 (76)
16 PF11543 UN_NPL4: Nuclear pore 96.6 0.0036 7.9E-08 53.7 5.4 76 497-575 4-80 (80)
17 cd01792 ISG15_repeat1 ISG15 ub 96.4 0.016 3.5E-07 48.8 7.8 71 498-572 3-73 (80)
18 cd01807 GDX_N ubiquitin-like d 96.4 0.013 2.8E-07 48.4 7.1 68 499-572 2-69 (74)
19 PTZ00044 ubiquitin; Provisiona 96.4 0.014 3E-07 48.0 7.1 68 499-572 2-69 (76)
20 cd01791 Ubl5 UBL5 ubiquitin-li 96.3 0.022 4.8E-07 47.9 8.3 69 498-572 2-70 (73)
21 cd01809 Scythe_N Ubiquitin-lik 96.3 0.017 3.6E-07 46.5 6.9 69 498-572 1-69 (72)
22 cd01803 Ubiquitin Ubiquitin. U 96.1 0.026 5.6E-07 45.9 7.2 69 499-573 2-70 (76)
23 cd01794 DC_UbP_C dendritic cel 96.1 0.02 4.4E-07 47.5 6.5 67 500-572 1-67 (70)
24 PF03943 TAP_C: TAP C-terminal 96.1 0.005 1.1E-07 48.8 2.7 41 6-46 1-41 (51)
25 cd01798 parkin_N amino-termina 95.8 0.031 6.8E-07 45.6 6.5 67 500-572 1-67 (70)
26 cd01804 midnolin_N Ubiquitin-l 95.7 0.047 1E-06 46.0 7.5 68 498-572 2-69 (78)
27 cd01805 RAD23_N Ubiquitin-like 95.6 0.062 1.3E-06 44.2 7.7 68 499-572 2-71 (77)
28 cd01812 BAG1_N Ubiquitin-like 95.5 0.056 1.2E-06 43.6 7.0 69 498-573 1-69 (71)
29 PF00627 UBA: UBA/TS-N domain; 95.4 0.032 6.8E-07 40.9 4.8 35 5-40 2-36 (37)
30 cd01763 Sumo Small ubiquitin-r 95.4 0.13 2.7E-06 44.3 9.1 73 494-572 8-80 (87)
31 cd01810 ISG15_repeat2 ISG15 ub 95.4 0.056 1.2E-06 44.7 6.6 68 500-573 1-68 (74)
32 PF00240 ubiquitin: Ubiquitin 95.1 0.068 1.5E-06 42.9 6.1 64 503-572 1-64 (69)
33 cd01808 hPLIC_N Ubiquitin-like 95.0 0.1 2.2E-06 42.8 7.0 68 498-572 1-68 (71)
34 cd01796 DDI1_N DNA damage indu 94.5 0.13 2.7E-06 42.6 6.4 69 500-573 1-70 (71)
35 cd01802 AN1_N ubiquitin-like d 94.5 0.2 4.3E-06 44.9 8.1 72 496-573 26-97 (103)
36 cd00194 UBA Ubiquitin Associat 94.3 0.12 2.6E-06 37.5 5.1 36 6-42 2-37 (38)
37 smart00804 TAP_C C-terminal do 94.1 0.11 2.3E-06 43.2 5.1 40 5-44 12-51 (63)
38 smart00165 UBA Ubiquitin assoc 94.0 0.12 2.6E-06 37.3 4.8 36 6-42 2-37 (37)
39 PRK06369 nac nascent polypepti 92.8 0.17 3.6E-06 46.8 4.7 38 4-41 75-112 (115)
40 TIGR00264 alpha-NAC-related pr 92.7 0.18 3.8E-06 46.7 4.7 36 5-40 78-113 (116)
41 cd01814 NTGP5 Ubiquitin-like N 92.7 0.26 5.5E-06 45.5 5.7 62 496-562 3-72 (113)
42 TIGR00601 rad23 UV excision re 92.6 0.34 7.5E-06 52.6 7.5 68 499-572 2-72 (378)
43 smart00213 UBQ Ubiquitin homol 92.5 0.38 8.2E-06 37.3 5.8 61 499-565 2-62 (64)
44 cd01769 UBL Ubiquitin-like dom 92.1 0.58 1.3E-05 36.7 6.5 66 502-573 2-67 (69)
45 cd01797 NIRF_N amino-terminal 92.0 0.67 1.4E-05 39.3 7.1 69 499-573 2-72 (78)
46 cd01813 UBP_N UBP ubiquitin pr 91.9 0.69 1.5E-05 38.9 7.0 70 498-572 1-71 (74)
47 COG1308 EGD2 Transcription fac 91.5 0.31 6.7E-06 45.5 4.8 37 4-40 83-119 (122)
48 cd01793 Fubi Fubi ubiquitin-li 91.0 1.1 2.3E-05 37.1 7.2 66 499-572 2-67 (74)
49 PF11976 Rad60-SLD: Ubiquitin- 90.8 0.82 1.8E-05 37.1 6.2 69 498-572 1-70 (72)
50 cd00196 UBQ Ubiquitin-like pro 90.4 1 2.3E-05 32.1 5.9 65 502-572 2-66 (69)
51 PF13881 Rad60-SLD_2: Ubiquiti 90.2 1.6 3.5E-05 39.9 8.1 64 497-565 2-73 (111)
52 KOG2086 Protein tyrosine phosp 89.4 0.13 2.9E-06 55.6 0.7 41 6-46 5-45 (380)
53 PF14560 Ubiquitin_2: Ubiquiti 88.1 2.4 5.2E-05 36.2 7.4 76 498-574 2-82 (87)
54 cd01800 SF3a120_C Ubiquitin-li 87.2 1.6 3.6E-05 36.3 5.7 61 506-572 6-66 (76)
55 cd01799 Hoil1_N Ubiquitin-like 87.0 3.2 7E-05 35.1 7.4 67 503-574 8-74 (75)
56 PF14836 Ubiquitin_3: Ubiquiti 81.2 4.4 9.5E-05 36.0 5.9 63 509-573 15-78 (88)
57 PF02809 UIM: Ubiquitin intera 79.6 1.7 3.7E-05 28.0 2.1 16 205-220 2-17 (18)
58 KOG1144 Translation initiation 78.2 8.8 0.00019 45.6 8.7 22 415-436 223-244 (1064)
59 cd01790 Herp_N Homocysteine-re 77.5 11 0.00023 32.8 7.1 60 498-562 2-65 (79)
60 KOG1029 Endocytic adaptor prot 77.1 16 0.00035 43.5 10.3 29 9-47 19-47 (1118)
61 KOG1029 Endocytic adaptor prot 76.5 14 0.0003 44.1 9.6 10 95-104 104-113 (1118)
62 PF08817 YukD: WXG100 protein 75.2 7.3 0.00016 32.8 5.4 71 497-572 2-78 (79)
63 smart00726 UIM Ubiquitin-inter 73.6 3.1 6.8E-05 29.1 2.3 19 206-224 2-20 (26)
64 cd01789 Alp11_N Ubiquitin-like 71.7 27 0.00058 30.0 8.1 75 498-574 2-80 (84)
65 PTZ00266 NIMA-related protein 71.3 26 0.00056 43.1 10.6 15 357-371 423-437 (1021)
66 smart00726 UIM Ubiquitin-inter 70.5 2.1 4.5E-05 30.0 0.9 19 237-255 2-20 (26)
67 KOG3654 Uncharacterized CH dom 67.9 23 0.00051 40.4 8.6 78 396-477 371-452 (708)
68 KOG0163 Myosin class VI heavy 65.6 30 0.00065 41.4 9.1 13 154-166 398-410 (1259)
69 PLN02560 enoyl-CoA reductase 65.1 29 0.00063 37.0 8.4 74 499-575 2-83 (308)
70 PF02845 CUE: CUE domain; Int 64.9 22 0.00048 26.6 5.5 38 6-43 2-40 (42)
71 KOG3077 Uncharacterized conser 64.2 2.5 5.4E-05 44.1 0.3 42 5-46 8-49 (260)
72 COG3122 Uncharacterized protei 64.1 44 0.00096 33.7 8.8 26 499-524 128-153 (215)
73 KOG2412 Nuclear-export-signal 64.1 45 0.00097 38.5 9.9 12 415-426 185-196 (591)
74 KOG0163 Myosin class VI heavy 62.1 37 0.00081 40.7 9.1 11 518-528 1070-1080(1259)
75 PF09379 FERM_N: FERM N-termin 60.9 19 0.0004 29.6 4.9 63 502-564 1-65 (80)
76 KOG1363 Predicted regulator of 60.0 43 0.00092 37.8 8.9 23 8-30 3-25 (460)
77 cd01815 BMSC_UbP_N Ubiquitin-l 59.8 20 0.00043 31.0 4.9 52 515-572 18-72 (75)
78 PRK09377 tsf elongation factor 58.9 17 0.00036 38.6 5.3 43 1-43 1-43 (290)
79 cd01801 Tsc13_N Ubiquitin-like 58.5 36 0.00078 28.4 6.3 57 515-575 20-77 (77)
80 COG5100 NPL4 Nuclear pore prot 58.2 26 0.00057 39.1 6.7 71 499-574 2-78 (571)
81 smart00546 CUE Domain that may 57.5 18 0.00039 27.1 3.9 37 7-43 4-41 (43)
82 TIGR00116 tsf translation elon 55.7 20 0.00043 38.0 5.2 38 4-41 3-40 (290)
83 PRK12332 tsf elongation factor 54.7 20 0.00044 35.9 4.9 39 5-43 4-42 (198)
84 cd01795 USP48_C USP ubiquitin- 54.4 26 0.00056 32.3 5.0 55 513-572 20-74 (107)
85 CHL00098 tsf elongation factor 54.1 21 0.00045 36.0 4.8 37 6-42 2-38 (200)
86 KOG1144 Translation initiation 53.4 45 0.00098 40.1 7.9 11 415-425 217-227 (1064)
87 KOG4364 Chromatin assembly fac 51.4 90 0.0019 37.0 9.7 15 558-573 456-470 (811)
88 COG0264 Tsf Translation elonga 51.1 27 0.00058 37.3 5.3 41 1-41 1-41 (296)
89 smart00295 B41 Band 4.1 homolo 50.4 1.1E+02 0.0025 28.7 9.0 68 497-564 3-72 (207)
90 PF06098 Radial_spoke_3: Radia 48.9 1.6E+02 0.0034 31.5 10.5 28 416-443 141-168 (291)
91 KOG2412 Nuclear-export-signal 47.8 1.5E+02 0.0031 34.5 10.5 16 368-383 117-132 (591)
92 PF15236 CCDC66: Coiled-coil d 47.6 2.9E+02 0.0062 27.2 12.4 28 412-439 42-69 (157)
93 PF13904 DUF4207: Domain of un 46.5 1.3E+02 0.0029 31.2 9.5 23 506-528 169-191 (264)
94 PF02196 RBD: Raf-like Ras-bin 45.7 52 0.0011 27.6 5.3 55 499-553 2-56 (71)
95 KOG3054 Uncharacterized conser 45.6 1.7E+02 0.0037 31.1 9.8 11 474-484 172-182 (299)
96 PF07946 DUF1682: Protein of u 45.3 77 0.0017 33.7 7.7 26 414-439 256-281 (321)
97 KOG3054 Uncharacterized conser 43.1 1.4E+02 0.0031 31.6 8.8 9 520-528 202-210 (299)
98 PTZ00121 MAEBL; Provisional 42.4 1.4E+02 0.0029 38.7 9.8 25 415-439 1116-1140(2084)
99 PF11470 TUG-UBL1: GLUT4 regul 41.2 80 0.0017 26.5 5.6 62 504-571 3-64 (65)
100 PRK00247 putative inner membra 41.1 2.3E+02 0.005 31.9 10.8 22 409-430 281-302 (429)
101 KOG0011 Nucleotide excision re 40.5 71 0.0015 34.8 6.5 63 499-566 2-66 (340)
102 KOG3878 Protein involved in ma 39.6 80 0.0017 34.7 6.7 33 415-449 125-157 (469)
103 PLN03086 PRLI-interacting fact 39.6 1.9E+02 0.0041 33.7 10.0 26 415-440 7-32 (567)
104 PLN02316 synthase/transferase 38.0 1.8E+02 0.0039 36.2 10.1 22 409-430 238-259 (1036)
105 PF06972 DUF1296: Protein of u 37.2 96 0.0021 26.1 5.3 37 7-43 7-44 (60)
106 KOG4661 Hsp27-ERE-TATA-binding 37.2 1.3E+02 0.0028 35.3 8.1 16 308-323 549-564 (940)
107 KOG2756 Predicted Mg2+-depende 37.0 27 0.00058 37.4 2.7 37 8-44 28-64 (349)
108 PRK05441 murQ N-acetylmuramic 35.8 45 0.00098 35.1 4.2 37 8-44 238-274 (299)
109 cd01760 RBD Ubiquitin-like dom 34.7 1E+02 0.0022 26.3 5.4 45 500-544 2-46 (72)
110 KOG0010 Ubiquitin-like protein 34.3 92 0.002 35.5 6.4 70 496-572 14-83 (493)
111 TIGR00274 N-acetylmuramic acid 31.1 60 0.0013 34.2 4.2 36 8-43 233-268 (291)
112 KOG2891 Surface glycoprotein [ 30.6 2.4E+02 0.0051 30.6 8.3 21 21-41 6-26 (445)
113 KOG2072 Translation initiation 30.0 4.4E+02 0.0095 32.4 11.1 29 416-444 562-594 (988)
114 PTZ00121 MAEBL; Provisional 29.9 3.1E+02 0.0067 35.7 10.1 11 92-102 760-772 (2084)
115 PF07946 DUF1682: Protein of u 29.8 1.3E+02 0.0029 31.9 6.6 16 91-107 92-107 (321)
116 cd01777 SNX27_RA Ubiquitin dom 29.5 1E+02 0.0022 27.6 4.6 36 498-533 2-37 (87)
117 PLN03086 PRLI-interacting fact 28.5 1.8E+02 0.0039 33.9 7.6 17 512-528 144-160 (567)
118 COG3064 TolA Membrane protein 27.5 5.4E+02 0.012 28.4 10.4 8 359-366 63-70 (387)
119 PRK12570 N-acetylmuramic acid- 27.3 74 0.0016 33.6 4.1 36 8-43 234-269 (296)
120 PF04221 RelB: RelB antitoxin; 27.2 74 0.0016 27.3 3.4 27 20-46 13-39 (83)
121 KOG1071 Mitochondrial translat 26.5 98 0.0021 33.7 4.8 34 6-39 47-80 (340)
122 PLN02316 synthase/transferase 25.1 2.3E+02 0.0049 35.4 8.0 15 237-251 109-123 (1036)
123 COG4942 Membrane-bound metallo 24.9 6.7E+02 0.015 28.4 10.9 22 499-521 296-318 (420)
124 KOG2072 Translation initiation 24.6 5.4E+02 0.012 31.7 10.5 7 65-71 342-348 (988)
125 PF11547 E3_UbLigase_EDD: E3 u 23.7 1.9E+02 0.0041 23.6 4.7 40 7-46 11-51 (53)
126 COG1422 Predicted membrane pro 22.9 2.9E+02 0.0064 28.2 7.1 14 429-442 63-76 (201)
127 smart00455 RBD Raf-like Ras-bi 22.3 3E+02 0.0066 23.1 6.1 43 500-542 2-44 (70)
128 COG2103 Predicted sugar phosph 21.2 1.1E+02 0.0025 32.6 4.0 35 8-42 236-270 (298)
129 cd01818 TIAM1_RBD Ubiquitin do 20.4 1.9E+02 0.0042 25.4 4.6 40 502-541 4-43 (77)
130 KOG2891 Surface glycoprotein [ 20.3 8.2E+02 0.018 26.7 10.0 6 210-215 178-183 (445)
No 1
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-41 Score=359.33 Aligned_cols=444 Identities=28% Similarity=0.320 Sum_probs=309.0
Q ss_pred hcCCHHHHHHHHHhcCCCcccccccCCCCCCCCCCCccCCCCCCCCCCCCCCccccccccCCCCCCCCCccccccccCCC
Q 008174 30 HSGDLNAAVNAHFSEGDRNTSLNATHQSSVPAPQTDFMDIDDPIESVPREPPLSFLSGSRTLNPFSLLDPSSRRRFFDGA 109 (575)
Q Consensus 30 ~~~dL~~Avn~~f~~~~~~~~~~~~~~~~~~~p~~d~m~~ddp~~~~~~~~~~~~~~~~~~~~pf~lldp~~~~~~f~~~ 109 (575)
++|||+.|++.++...+-.... .......+.|.++++.+..- +.++. -.-.-+||.++||.|..+++++.
T Consensus 2 ~~~d~~~~i~~~~~~~~~~~~e----~~~~~~~~~~~~~~~~~~~~-~~~~~-----r~~~~~~~~~vd~~~~~r~~~~~ 71 (460)
T KOG1363|consen 2 ANWDLVEAIEGVLPQEDGALSE----EPMGEPGQNDDEDANQEAPP-PLRPR-----RTIFADPFPVVDPDFNYRDDNVD 71 (460)
T ss_pred ccHhHHHHHhhcccccCccccc----ccccCCCccccccccCCCCC-ccCCc-----ccccCCccccccchhcccccCCC
Confidence 6899999999998887755544 22222334554555533321 12222 11112799999999988888843
Q ss_pred CCCCCCCCCCCCCCcccccceeecCCCCC---CCCCCcccccccccccCCCCCCcceeecCCCC-CCCCC-cc-------
Q 008174 110 SDFMSREPHVTHPREVREIPIEVRDGGDP---SGHAPTIEDVTESANTHGPDNRGTAIIDEVDE-DIPAP-PA------- 177 (575)
Q Consensus 110 ~~~~~~~p~vshprevr~ipie~kd~~~~---s~~~p~iedvt~~~~~~gp~~~gtv~~d~~~~-~~~~~-~~------- 177 (575)
.. +|+++|.|+++++.+++.|++++.. +...++++||+.+.+.++| .++.+++|+..+ ++.++ .+
T Consensus 72 ~~--~~~~~v~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~s~p~~~~~~~f~ 148 (460)
T KOG1363|consen 72 VS--PRPNTVGESKEIRSNEGGVPSSNGLLGGWSDNRTTEDVLSLALSLLP-LQSIVGGDPSSGDNIVSTPQGDSRETFV 148 (460)
T ss_pred cc--cCCCcccccceeeccCCCccccccccccccccccccccchhhhhcCc-hhhccccCCCCCCccccCCcchHHHHHH
Confidence 33 8999999999999999999999888 7778899999999999999 999999988754 55555 33
Q ss_pred -cccccCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHhHHHHhhccCCCCCCCCCCCccchhhhhhhhhhhHHHHHH
Q 008174 178 -AQSTLRNDGRSSPTAPAFDNLADYSNDIEEEMIRAAIEASKQEAENVSGAGTEHRQPHLEDVDLAHAVSLSLRTAEQEK 256 (575)
Q Consensus 178 -~~~~~~~~~~~~p~~~~~~~~~~~~ndieeemiraaieask~~~~~~~~~~~~~~~~~~ed~d~a~avslsl~~~~~~~ 256 (575)
..++.+... +|.+.-|+ |--|+-||++++...- ..+.- ..|.
T Consensus 149 ~~f~~ry~~~-----------~p~F~~d~---l~~a~~~A~~~~~~~~-~~l~~--~~~~-------------------- 191 (460)
T KOG1363|consen 149 DNFGDRYGSE-----------LPSFYTDV---LRNAFLEAFDRESEAR-KLLAI--YLHD-------------------- 191 (460)
T ss_pred HHHHHhcCCC-----------CCccchhH---HHHHHHHHHhhhhhhh-eeeEE--ecCC--------------------
Confidence 111111111 23333332 3446677777762211 11000 0000
Q ss_pred HHHHhcCccCccccCCCCCccccccccccCCCccCCCCCCccccccccccCccccccccccCCCCCCCccccccccCCCC
Q 008174 257 AQRELGGDVGASVAGASKPSEMELGKVATSNGRLEGGSLSIQEETEDVEEQPLVRHRSIHTSSGSGESDKEVGVTEVSSP 336 (575)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~pl~r~r~r~~~~~~~~~~~~~~~~~~~p~ 336 (575)
+ ....++.+....+..+...+...+++|+.++ .++.++++-........ ++.
T Consensus 192 ------------------------~-~~~~~~~F~~~iL~~e~v~~~l~~~~llw~~-dvt~~e~~~~~~~~~~r--~~~ 243 (460)
T KOG1363|consen 192 ------------------------D-KSDDTNVFCGQILCNEAVVDYLRENFLLWGW-DVTESENLLVFNSLLNR--SIS 243 (460)
T ss_pred ------------------------C-CcccHHHHHHhhhhhHHHHHHHhhceeeecc-cccCchhhHHHHHHhhc--ccc
Confidence 0 1122333555556677777778899999999 66666666655555555 222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhHHHHHHHHHhCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCccH
Q 008174 337 PSPGQPDVSNQPQHNGNAFPSDEWGGISSEEHDEAVMLEAAMFGGIPESGYR-FPYAPHQYMQPEGSYPRRVPRPPSPSL 415 (575)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~f~~~ewggi~s~e~dea~mleaa~~g~~p~~~~~-~~~~~~~~~~~~~~~~~~i~R~~~~~l 415 (575)
+... +.+... +++.| |..|++|+++.++|++|+.++|+|++.+..+- .++..+.. ..+.|...+..
T Consensus 244 ~~~~---~~~~~~-~~~~f-P~~~iv~~~~~~~Ell~~l~g~~~~~e~~~~~~~~~~~~~~--------~~q~~~~~~~e 310 (460)
T KOG1363|consen 244 SPAA---VTNKAS-KSERF-PLVRIVIGSRSPEELLRYLQGVTGVDEEMTLLLVAFEEEER--------RLQMRRSEQDE 310 (460)
T ss_pred hhhh---hhcchh-hcccC-chhhhhhcCCCHHHHHHHHHhcCCchHHHHHHHhhhhhhhH--------HHhhcccchhH
Confidence 1111 112333 67887 99999999999999999999999999885543 33322222 12556777777
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCC
Q 008174 416 EAQRLIREQ-QDDEYLASLQADREKAEARRLMEEEARNAALAEERRKEEETRRKMEEQQEYERQLAAKEASLPQEPAPDD 494 (575)
Q Consensus 416 e~~R~LREE-QDeAY~eSLraDrEK~e~Rr~EEE~aRkaaeEeeRrkEEE~~rk~ee~eeler~l~~K~asLP~EP~~~~ 494 (575)
.++|+++++ ||.+|++||++|+.|+.++. ++++++.++++| +.++++++..+++.|+..+||+||++..
T Consensus 311 r~~r~~~~~eQd~eyq~sle~Dr~r~~e~e---~~~e~~r~e~er-------~~~~ee~e~~R~~l~~es~lp~EP~a~~ 380 (460)
T KOG1363|consen 311 REARLALEQEQDDEYQASLEADRVREAEAE---QAAEEFRLEKER-------KEEEEERETARQLLALESSLPPEPSASE 380 (460)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HhhHHHHHhhhh-------hhHHHHHHHHHHHHhhhccCCCCCCcCc
Confidence 777776665 59999999999999921111 111111112222 2223456777889999999999998888
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEee
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLEL 574 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE~ 574 (575)
.++++|+||||+|.|+.|||.+++++++||+||+++ +..+..|.|+++|||+.|......+||+++||+|+|++||||.
T Consensus 381 ~~~~~l~iR~P~G~r~~RrF~~s~~~q~l~~~v~~~-~~~~~e~~~~~~fPr~~~~~~~~~~sl~~~~l~p~qe~lflE~ 459 (460)
T KOG1363|consen 381 EEAITVAIRLPSGTRLERRFLKSDKLQILYDYVDSN-GFHPEEYSLNTSFPRRPLGDYEHSSSLQDIGLTPRQETLFLEE 459 (460)
T ss_pred ccceeeEEECCCCCeeeeeeecccchhHHHHHHHhc-cCCchhhccccCCCcccccccccccccccCCcccccceeeeec
Confidence 899999999999999999999999999999999865 5788999999999999999888899999999999889999997
Q ss_pred C
Q 008174 575 V 575 (575)
Q Consensus 575 I 575 (575)
+
T Consensus 460 ~ 460 (460)
T KOG1363|consen 460 I 460 (460)
T ss_pred C
Confidence 5
No 2
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.83 E-value=1.9e-20 Score=160.11 Aligned_cols=79 Identities=29% Similarity=0.524 Sum_probs=73.9
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 494 DENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 494 ~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
+.+.|+|+||||||+|+.|||..+++|++||+||.+ .++.+..|+|+|+||||+|+.+|.++||+|+||+| +++||||
T Consensus 2 ~~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P-~~~LfVq 79 (82)
T cd01773 2 NGPKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCP-QETVFVQ 79 (82)
T ss_pred CCCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCC-CcEEEEe
Confidence 357899999999999999999999999999999986 67788999999999999999988999999999999 5999998
Q ss_pred e
Q 008174 574 L 574 (575)
Q Consensus 574 ~ 574 (575)
.
T Consensus 80 ~ 80 (82)
T cd01773 80 E 80 (82)
T ss_pred c
Confidence 4
No 3
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.83 E-value=1.8e-20 Score=159.00 Aligned_cols=78 Identities=37% Similarity=0.592 Sum_probs=72.1
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEee
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLEL 574 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE~ 574 (575)
+++|+|+||||||+|++|||+.+++|++||+||++ .++.+.+|+|+|+||||+|+..|.++||+|+||+| +++||||.
T Consensus 2 ~~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~-~~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p-~~~L~Vee 79 (80)
T cd01771 2 EPISKLRVRTPSGDFLERRFLGDTPLQVLLNFVAS-KGYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYP-QETLILEE 79 (80)
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCC-CcEEEEEc
Confidence 46899999999999999999999999999999985 47778899999999999998777889999999998 59999984
No 4
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.81 E-value=1.2e-19 Score=155.51 Aligned_cols=79 Identities=28% Similarity=0.552 Sum_probs=71.8
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCC-----CCcccchhhcCCCCCcee
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSD-----GESALTLNELGLTSKQEA 569 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~-----eD~skTLeElGL~Psqaa 569 (575)
+++|+|+||||||+|++|||+.++||++||+||. +.+..+.+|.|+++||||+|+. .+.++||+|+||+| +++
T Consensus 2 ~~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~-~~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~-s~~ 79 (85)
T cd01774 2 PDTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLF-SLKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSN-SEV 79 (85)
T ss_pred CceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHH-hCCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCC-ccE
Confidence 4789999999999999999999999999999997 4567789999999999999984 46789999999998 599
Q ss_pred EEEeeC
Q 008174 570 LFLELV 575 (575)
Q Consensus 570 L~VE~I 575 (575)
|+|+.+
T Consensus 80 L~V~d~ 85 (85)
T cd01774 80 LFVQDL 85 (85)
T ss_pred EEEecC
Confidence 999964
No 5
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.79 E-value=3.5e-19 Score=149.98 Aligned_cols=78 Identities=22% Similarity=0.501 Sum_probs=70.9
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEee
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLEL 574 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE~ 574 (575)
.+.|+|+||||||++++++|+.+++|++||+||+++. .....|.|+|+||||.|+.+|.++||+|+||+|+ ++|+||+
T Consensus 2 ~~~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~-~~~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Ps-a~L~v~~ 79 (79)
T cd01772 2 YTETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNT-GNGGPFTLMTPFPRKVFTEDDMEKPLQELGLVPS-AVLIVTK 79 (79)
T ss_pred CcEEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcC-CCCCCEEEEeCCCCeECCcccccCCHHHCCCCCc-eEEEEeC
Confidence 3579999999999999999999999999999998654 3358899999999999998888999999999995 9999985
No 6
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=99.79 E-value=3.8e-19 Score=149.12 Aligned_cols=78 Identities=33% Similarity=0.608 Sum_probs=71.9
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEee
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLEL 574 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE~ 574 (575)
+.|+|+||||||+|++|+|+.++||++||+||..+.+.....|.|+++||||.|+..|.++||.|+||+| +++|+|++
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p-~~~l~v~~ 80 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLP-SSTLVLEP 80 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCC-ceEEEEeC
Confidence 6799999999999999999999999999999976666667799999999999999877789999999998 59999984
No 7
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=99.76 E-value=3.9e-18 Score=141.90 Aligned_cols=75 Identities=33% Similarity=0.636 Sum_probs=67.2
Q ss_pred ceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEee
Q 008174 497 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLEL 574 (575)
Q Consensus 497 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE~ 574 (575)
+|+|+||||||++++|+|+.+++|++||+||+++. .....|.|+++||||.|...+.++||+|+||.| ++++|+.
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~-~~~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~--s~~~~~~ 76 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNG-PPAEPFTLMTSFPRRVLTDLDYELTLQEAGLVN--EVVFQRL 76 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcC-CCCCCEEEEeCCCCccCCCCCccCcHHHcCCcc--ceEEEEe
Confidence 69999999999999999999999999999998654 347899999999999999867899999999997 5777664
No 8
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=99.75 E-value=2.6e-18 Score=143.56 Aligned_cols=79 Identities=37% Similarity=0.668 Sum_probs=69.7
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcC-eEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 494 DENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGT-YRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 494 ~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~-F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
..+.|+|+||||||++++|+|.+++||++||+||+......... |.|+++|||+.|...+ ++||+|+||.| +++|+|
T Consensus 3 ~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~-~~tl~e~~l~p-~~~l~v 80 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDED-SKTLEEAGLLP-SATLIV 80 (82)
T ss_dssp TSSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTT-TSBTCCCTTSS-CEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccc-cccHHHhcCCC-CeEEEE
Confidence 35789999999999999999999999999999998755444444 9999999999999876 89999999998 599999
Q ss_pred ee
Q 008174 573 EL 574 (575)
Q Consensus 573 E~ 574 (575)
++
T Consensus 81 ~~ 82 (82)
T PF00789_consen 81 EK 82 (82)
T ss_dssp E-
T ss_pred EC
Confidence 85
No 9
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.70 E-value=7.3e-17 Score=136.56 Aligned_cols=75 Identities=27% Similarity=0.492 Sum_probs=65.2
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCC-CCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEee
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRG-IKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLEL 574 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~-~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE~ 574 (575)
+.|+|+||||||+|++|||+.++||++||+||.++.. .....|.|+++||+|.|... ++||+|+||.+ ++|++.+
T Consensus 3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~--~~Tl~eagL~~--s~v~q~~ 78 (79)
T cd01770 3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDE--SLTLKEANLLN--AVIVQRL 78 (79)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCC--CCcHHHCCCcC--cEEEEEe
Confidence 5799999999999999999999999999999997543 34579999999999999963 89999999997 4666554
No 10
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.8e-15 Score=152.91 Aligned_cols=80 Identities=26% Similarity=0.472 Sum_probs=75.3
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEee
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLEL 574 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE~ 574 (575)
.+.|+||||||||+.+...|++..+|..|..||+.+.+.....|.|.|+|||++|+.+|+.++|++|||.|+ ++|++++
T Consensus 208 ys~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Ps-a~lil~~ 286 (290)
T KOG2689|consen 208 YSQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPS-AVLILEP 286 (290)
T ss_pred ccceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccc-hheeccc
Confidence 478999999999999999999999999999999988888888999999999999999999999999999997 9999875
Q ss_pred C
Q 008174 575 V 575 (575)
Q Consensus 575 I 575 (575)
+
T Consensus 287 ~ 287 (290)
T KOG2689|consen 287 L 287 (290)
T ss_pred c
Confidence 3
No 11
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=99.54 E-value=2.1e-14 Score=152.10 Aligned_cols=78 Identities=35% Similarity=0.589 Sum_probs=72.4
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
+.|+|+||||||+.++..|..++.|..|.+||........+.|.|.++||||.|+.+|.++||.||.|.|++++|+|.
T Consensus 313 d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlp 390 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLP 390 (506)
T ss_pred ceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEe
Confidence 679999999999999999999999999999999777788899999999999999999999999999999986666654
No 12
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=4e-12 Score=132.57 Aligned_cols=75 Identities=32% Similarity=0.534 Sum_probs=64.6
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEE
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVG-RGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALF 571 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~-~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~ 571 (575)
.+|+|+||||||+|.+|||.++++++.||.|+..+ .+.....|+|++.||++.....+.+.||+++||.|+ ++|+
T Consensus 276 vvt~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS-~~~~ 351 (356)
T KOG1364|consen 276 VVTSIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANS-ETLL 351 (356)
T ss_pred ceeEEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcc-cccc
Confidence 46779999999999999999999999999999753 345577899999999887776678999999999985 5544
No 13
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=99.29 E-value=4.5e-12 Score=95.87 Aligned_cols=42 Identities=55% Similarity=0.754 Sum_probs=37.1
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 008174 6 QEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEGDR 47 (575)
Q Consensus 6 ~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~~~ 47 (575)
++.|.+||+|||+++.+|++||+.|+|||+.||+.||..++.
T Consensus 1 ~e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~~~~~~ 42 (43)
T PF14555_consen 1 DEKIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYFDDGEA 42 (43)
T ss_dssp HHHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHHHSS-S
T ss_pred CHHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 478999999999999999999999999999999999998764
No 14
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=98.96 E-value=7.5e-10 Score=117.09 Aligned_cols=76 Identities=28% Similarity=0.503 Sum_probs=65.3
Q ss_pred CCCCCCCCCCCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCC-CCcCeEEEcCCCCcccCCCCcccchhhcCCC
Q 008174 486 LPQEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGI-KAGTYRLVRPYPRRAFSDGESALTLNELGLT 564 (575)
Q Consensus 486 LP~EP~~~~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~-~p~~F~LvT~FPRR~ft~eD~skTLeElGL~ 564 (575)
|+-.|. ...+.|||||.||+|++-+|+.++||.+||.||+..+.. ....|.|+++||.|.|.+ .++||+++||.
T Consensus 297 l~~d~~---~PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D--~sqTle~AgL~ 371 (380)
T KOG2086|consen 297 LVIDPA---EPTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSD--DSQTLEEAGLL 371 (380)
T ss_pred cccCCC---CCcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCC--cchhHHhccch
Confidence 444443 467999999999999999999999999999999977653 345799999999999996 58999999999
Q ss_pred CC
Q 008174 565 SK 566 (575)
Q Consensus 565 Ps 566 (575)
++
T Consensus 372 Ns 373 (380)
T KOG2086|consen 372 NS 373 (380)
T ss_pred hh
Confidence 74
No 15
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=97.00 E-value=0.0035 Score=51.00 Aligned_cols=69 Identities=19% Similarity=0.298 Sum_probs=59.0
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
+|.||..+|+.+..++..++|+.+|...|....+..+...+|+ |-.+.+.+ ++||.++|+.+ +.+|+|-
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~--~~g~~L~d---~~tl~~~~i~~-g~~i~l~ 70 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI--YSGKQMND---DKTAADYKLEG-GSVLHLV 70 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEE--ECCeEccC---CCCHHHcCCCC-CCEEEEE
Confidence 6889999999999999999999999999987777888888998 66777764 68999999997 5777653
No 16
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=96.64 E-value=0.0036 Score=53.67 Aligned_cols=76 Identities=25% Similarity=0.339 Sum_probs=44.3
Q ss_pred ceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCc-ccCCCCcccchhhcCCCCCceeEEEeeC
Q 008174 497 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRR-AFSDGESALTLNELGLTSKQEALFLELV 575 (575)
Q Consensus 497 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR-~ft~eD~skTLeElGL~PsqaaL~VE~I 575 (575)
..-|+||-+||...+ ....++|+.+||+.|....+.....|.|......+ .+.. +..+||.++||.. ...|||..+
T Consensus 4 ~milRvrS~dG~~Ri-e~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s-~~~~tl~~lglkH-GdmlyL~~~ 80 (80)
T PF11543_consen 4 SMILRVRSKDGMKRI-EVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKS-SDSKTLSSLGLKH-GDMLYLKPM 80 (80)
T ss_dssp --EEEEE-SSEEEEE-EE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS--TT-CCCCT---T-T-EEE----
T ss_pred cEEEEEECCCCCEEE-EcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCccccc-CCcCCHHHcCCCC-ccEEEEecC
Confidence 467999999997444 58899999999999987777777789998765544 3432 4589999999997 689998653
No 17
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=96.41 E-value=0.016 Score=48.80 Aligned_cols=71 Identities=24% Similarity=0.229 Sum_probs=59.2
Q ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 498 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 498 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
..|.||..+|+.+...+..++|+.+|.+-|....+.....++|...|..+.+.+ +.||.++|+.+ +.+|+|
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D---~~tL~~~gi~~-gs~l~l 73 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQD---GVPLVSQGLGP-GSTVLL 73 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCC---CCCHHHcCCCC-CCEEEE
Confidence 578999999999999999999999999999866677788889965676677664 57999999987 567755
No 18
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=96.39 E-value=0.013 Score=48.38 Aligned_cols=68 Identities=16% Similarity=0.273 Sum_probs=58.5
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
+|.||..+|+.+.-....++|+.+|..-|....+..+..++|+ |=-+.+.+ +.||.++|+.+ +.+|+|
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~--~~G~~L~d---~~~L~~~~i~~-~~~l~l 69 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLL--FKGKALAD---DKRLSDYSIGP-NAKLNL 69 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE--ECCEECCC---CCCHHHCCCCC-CCEEEE
Confidence 6889999999998999999999999999987777888889998 66777764 58999999997 577765
No 19
>PTZ00044 ubiquitin; Provisional
Probab=96.36 E-value=0.014 Score=47.99 Aligned_cols=68 Identities=21% Similarity=0.405 Sum_probs=58.6
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
.|-||..+|+.+.-++..++||.+|..-|....+..+...+|+ |--+.+.+ +.||.+.++.+ +..|.|
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~--~~g~~L~d---~~~l~~~~i~~-~~~i~l 69 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLI--YSGKQMSD---DLKLSDYKVVP-GSTIHM 69 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE--ECCEEccC---CCcHHHcCCCC-CCEEEE
Confidence 5789999999999999999999999999988777888889998 77777763 67899999997 477665
No 20
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=96.34 E-value=0.022 Score=47.86 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=58.6
Q ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 498 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 498 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
++|.||-..|+.+...+..++|+.+|..-|....++.+..-+|+ |.-+.|.+ ++||.+.||.+ +.++++
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi--~~Gk~L~D---~~tL~~ygi~~-~stv~l 70 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLK--KWYTIFKD---HISLGDYEIHD-GMNLEL 70 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE--eCCcCCCC---CCCHHHcCCCC-CCEEEE
Confidence 57899998999999999999999999999987667778888887 66777664 57999999997 477775
No 21
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=96.27 E-value=0.017 Score=46.55 Aligned_cols=69 Identities=22% Similarity=0.287 Sum_probs=56.3
Q ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 498 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 498 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
++|.||.++|+.+...+..++|+.+|...|....+..+...+|+ |..+.+.+ +.||.+.|+.+ +..|+|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~--~~g~~L~d---~~~L~~~~i~~-~~~l~l 69 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLI--YSGRVLKD---DETLSEYKVED-GHTIHL 69 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE--ECCEECCC---cCcHHHCCCCC-CCEEEE
Confidence 47899999999999999999999999999987666667777887 44666553 68999999997 466665
No 22
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=96.08 E-value=0.026 Score=45.91 Aligned_cols=69 Identities=19% Similarity=0.328 Sum_probs=57.3
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
.|.||..+|+.+.-.+..++||.+|...|....+..+...+|+ |.-+.+.+ +.||.++|+.+ ..+|.|-
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~--~~g~~L~d---~~~L~~~~i~~-~~~i~l~ 70 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-ESTLHLV 70 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEE--ECCEECCC---CCcHHHcCCCC-CCEEEEE
Confidence 5889999999999999999999999999987667777788887 66777664 58999999987 4666653
No 23
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=96.06 E-value=0.02 Score=47.55 Aligned_cols=67 Identities=15% Similarity=0.253 Sum_probs=57.0
Q ss_pred EEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 500 LLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 500 IqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
|.||+.+|+.+.-.+..++|+.+|...|....+..+...+|+ |--+.+.+ +.||.++|+.+ ..+++|
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li--~~G~~L~D---~~~l~~~~i~~-~~tv~~ 67 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWF--FSGKLLTD---KTRLQETKIQK-DYVVQV 67 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE--ECCeECCC---CCCHHHcCCCC-CCEEEE
Confidence 468999999999999999999999999987777777888887 66777764 69999999995 577765
No 24
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=96.05 E-value=0.005 Score=48.83 Aligned_cols=41 Identities=24% Similarity=0.213 Sum_probs=35.5
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 008174 6 QEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEGD 46 (575)
Q Consensus 6 ~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~~ 46 (575)
++.|.+|+..||-...=+.++|+.++||++.|+..|.....
T Consensus 1 q~mv~~~s~~Tgmn~~~s~~CL~~n~Wd~~~A~~~F~~l~~ 41 (51)
T PF03943_consen 1 QEMVQQFSQQTGMNLEWSQKCLEENNWDYERALQNFEELKA 41 (51)
T ss_dssp HHHHHHHHHHCSS-CCHHHHHHHHTTT-CCHHHHHHHHCCC
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999965543
No 25
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=95.78 E-value=0.031 Score=45.57 Aligned_cols=67 Identities=16% Similarity=0.296 Sum_probs=56.9
Q ss_pred EEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 500 LLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 500 IqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
|-||+++|..+.-.+..++|+.+|...|....+.....++|+ |=-+.|.+ +.||.++|+.+ +.+|+|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li--~~G~~L~d---~~~l~~~~i~~-~stl~l 67 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVI--FAGKELRN---TTTIQECDLGQ-QSILHA 67 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEE--ECCeECCC---CCcHHHcCCCC-CCEEEE
Confidence 458999999999999999999999999987777778888887 66777754 69999999997 577766
No 26
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=95.73 E-value=0.047 Score=46.04 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=56.2
Q ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 498 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 498 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
.+|.||..+|+.+.-.+..++|+.+|..-|....++.+...+|+ |..+.+.+ + ||.++|+.+ +.+|+|
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~--~~Gk~L~d---~-~L~~~gi~~-~~~i~l 69 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALL--HRETRLSS---G-KLQDLGLGD-GSKLTL 69 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEE--ECCcCCCC---C-cHHHcCCCC-CCEEEE
Confidence 47899999999999999999999999999976666777778887 66777653 4 899999997 466665
No 27
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=95.61 E-value=0.062 Score=44.16 Aligned_cols=68 Identities=13% Similarity=0.235 Sum_probs=55.4
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCC--CCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGI--KAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~--~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
+|.||..+|+.+.-.+..++|+.+|...|....+. .+...+|+ |..+.|.+ +.||.++|+.. +..|+|
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~--~~G~~L~d---~~~L~~~~i~~-~~~i~~ 71 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLI--YSGKILKD---DTTLEEYKIDE-KDFVVV 71 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEE--ECCEEccC---CCCHHHcCCCC-CCEEEE
Confidence 57899999999999999999999999999866565 66777777 66777764 58999999986 465654
No 28
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=95.52 E-value=0.056 Score=43.56 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=55.1
Q ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 498 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 498 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
++|.||.. |+....++..++||.+|..-|....+..+...+|+- -.+.+.+ +.||.++|+.+ +..|+|-
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~--~g~~l~d---~~~L~~~~i~~-g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIF--KGKERDD---AETLDMSGVKD-GSKVMLL 69 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEee--CCcccCc---cCcHHHcCCCC-CCEEEEe
Confidence 47889985 888889999999999999999876677788888874 3455542 68999999987 5777763
No 29
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=95.45 E-value=0.032 Score=40.90 Aligned_cols=35 Identities=20% Similarity=0.422 Sum_probs=31.5
Q ss_pred cHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHH
Q 008174 5 NQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNA 40 (575)
Q Consensus 5 ~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~ 40 (575)
+.+.|++.|.+ |-+...|.+.|..++||++.||+-
T Consensus 2 ~~~~v~~L~~m-Gf~~~~~~~AL~~~~~nve~A~~~ 36 (37)
T PF00627_consen 2 DEEKVQQLMEM-GFSREQAREALRACNGNVERAVDW 36 (37)
T ss_dssp HHHHHHHHHHH-TS-HHHHHHHHHHTTTSHHHHHHH
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHh
Confidence 46889999999 999999999999999999999973
No 30
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=95.39 E-value=0.13 Score=44.30 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=60.0
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 494 DENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 494 ~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
....++|.|+.++|+.+.-+...+++|+.|++.+....+..+..++|+-. -+.+.. +.|+.++|+.. ..++.|
T Consensus 8 ~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~--G~~L~~---~~T~~~l~m~d-~d~I~v 80 (87)
T cd01763 8 ISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFD--GQRIRD---NQTPDDLGMED-GDEIEV 80 (87)
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEEC--CeECCC---CCCHHHcCCCC-CCEEEE
Confidence 35679999999999999999999999999999998777888888888743 444443 68999999997 466655
No 31
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=95.36 E-value=0.056 Score=44.75 Aligned_cols=68 Identities=21% Similarity=0.344 Sum_probs=57.3
Q ss_pred EEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 500 LLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 500 IqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
|-||.++|+.+.-....++||.+|..-|....+.....++|+ |=-+.|.+ +.||.+.|+.+ +.+|+|-
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~G~~L~D---~~tL~~~~i~~-~~tl~l~ 68 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLS--FEGRPMED---EHPLGEYGLKP-GCTVFMN 68 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE--ECCEECCC---CCCHHHcCCCC-CCEEEEE
Confidence 468999999999999999999999999987777778889997 56777764 58999999997 5777664
No 32
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=95.06 E-value=0.068 Score=42.94 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=54.5
Q ss_pred ECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 503 RMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 503 RLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
|..+|+.+.-.+..++||.+|...|....+..+...+|+ |--+.+. .+.||.++|+.+ +++++|
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~--~~G~~L~---d~~tL~~~~i~~-~~~I~l 64 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLI--YNGKELD---DDKTLSDYGIKD-GSTIHL 64 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEE--ETTEEES---TTSBTGGGTTST-TEEEEE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceee--eeeeccc---CcCcHHHcCCCC-CCEEEE
Confidence 567999999999999999999999988777888899988 4567774 379999999997 577765
No 33
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=94.98 E-value=0.1 Score=42.80 Aligned_cols=68 Identities=10% Similarity=0.212 Sum_probs=54.8
Q ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 498 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 498 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
++|-||.++|+ ..-.+..++|+.+|..-|....+.....++|+ |..+.+.+ +.||.++|+.+ +.+|+|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li--~~Gk~L~d---~~tL~~~~i~~-~stl~l 68 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLI--FAGKILKD---TDTLTQHNIKD-GLTVHL 68 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEE--ECCeEcCC---CCcHHHcCCCC-CCEEEE
Confidence 36889999996 46788899999999999976666667788885 67777764 57999999997 577776
No 34
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=94.49 E-value=0.13 Score=42.60 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=56.7
Q ss_pred EEEECC-CCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 500 LLVRMP-DGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 500 IqIRLP-DGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
|-||++ +|+.+.-....+.||.+|...|....+......+|+ |=-|.+.+ ...+|.++|+.+ +.+|+|-
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li--~~Gk~L~D--~~~~L~~~gi~~-~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLI--YNGRELVD--NKRLLALYGVKD-GDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEE--ECCeEccC--CcccHHHcCCCC-CCEEEEe
Confidence 457999 999899999999999999999987777878888887 55677753 357999999997 5777763
No 35
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=94.47 E-value=0.2 Score=44.87 Aligned_cols=72 Identities=18% Similarity=0.222 Sum_probs=61.2
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
+...|-||..+|+.+.-....++||.+|...|....+.....++|+ |=-+.+.+ +.||.+.+|.+ +.+|.|-
T Consensus 26 ~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi--~~Gk~L~D---~~tL~dy~I~~-~stL~l~ 97 (103)
T cd01802 26 DTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLI--WNNMELED---EYCLNDYNISE-GCTLKLV 97 (103)
T ss_pred CCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE--ECCEECCC---CCcHHHcCCCC-CCEEEEE
Confidence 4688999999999999999999999999999987777778889998 56777764 58999999997 5777764
No 36
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=94.25 E-value=0.12 Score=37.52 Aligned_cols=36 Identities=17% Similarity=0.342 Sum_probs=32.7
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 008174 6 QEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHF 42 (575)
Q Consensus 6 ~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f 42 (575)
.+.|++.+++ |-++..|.+.|+.++||++.|++..|
T Consensus 2 ~~~v~~L~~m-Gf~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 2 EEKLEQLLEM-GFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 4688999985 99999999999999999999998776
No 37
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=94.09 E-value=0.11 Score=43.23 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=36.6
Q ss_pred cHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhc
Q 008174 5 NQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSE 44 (575)
Q Consensus 5 ~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~ 44 (575)
.++.|..|+..||-...=+...|+.++||++.|+..|-.-
T Consensus 12 q~~~v~~~~~~Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~l 51 (63)
T smart00804 12 QQEMVQAFSAQTGMNAEYSQMCLEDNNWDYERALKNFTEL 51 (63)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3677999999999999999999999999999999999553
No 38
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=94.03 E-value=0.12 Score=37.31 Aligned_cols=36 Identities=22% Similarity=0.442 Sum_probs=32.3
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 008174 6 QEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHF 42 (575)
Q Consensus 6 ~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f 42 (575)
.+.|++++++ |-++..|.+.|+.++||++.|++-.|
T Consensus 2 ~~~v~~L~~m-Gf~~~~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 2 EEKIDQLLEM-GFSREEALKALRAANGNVERAAEYLL 37 (37)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence 4678899888 99999999999999999999998654
No 39
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=92.78 E-value=0.17 Score=46.78 Aligned_cols=38 Identities=34% Similarity=0.397 Sum_probs=34.2
Q ss_pred CcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHH
Q 008174 4 PNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAH 41 (575)
Q Consensus 4 p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~ 41 (575)
...+-|+-.|+=||+|...|...|++++|||-+||-..
T Consensus 75 i~~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~L 112 (115)
T PRK06369 75 IPEEDIELVAEQTGVSEEEARKALEEANGDLAEAILKL 112 (115)
T ss_pred CCHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHH
Confidence 35678999999999999999999999999999999743
No 40
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=92.70 E-value=0.18 Score=46.71 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=33.0
Q ss_pred cHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHH
Q 008174 5 NQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNA 40 (575)
Q Consensus 5 ~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~ 40 (575)
+.+-|+-.|+=||+|...|...|++++|||.+||-.
T Consensus 78 ~~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~~ 113 (116)
T TIGR00264 78 TEDDIELVMKQCNVSKEEARRALEECGGDLAEAIMK 113 (116)
T ss_pred CHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHH
Confidence 567899999999999999999999999999999863
No 41
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=92.65 E-value=0.26 Score=45.49 Aligned_cols=62 Identities=15% Similarity=0.233 Sum_probs=47.8
Q ss_pred CceEEEEECCCCCE-EEEEeCCCCcHHHHHHHHHhcCC-------CCCcCeEEEcCCCCcccCCCCcccchhhcC
Q 008174 496 NAVTLLVRMPDGSR-RGRRFLKSNKLQSLFDYIDVGRG-------IKAGTYRLVRPYPRRAFSDGESALTLNELG 562 (575)
Q Consensus 496 ~~vrIqIRLPDGsR-i~RRF~~SDTLqdLydFVd~~~~-------~~p~~F~LvT~FPRR~ft~eD~skTLeElG 562 (575)
+.+.|.|||+||+- --.+|..++|+.+|..-|....+ +....-+|+ |--|+|.+ ++||.+++
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLI--ysGKiLeD---~~TL~d~~ 72 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLI--SAGKILEN---SKTVGECR 72 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEE--eCCeecCC---CCcHHHhC
Confidence 56899999999975 45789999999999999976553 223445665 55677764 69999999
No 42
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.55 E-value=0.34 Score=52.59 Aligned_cols=68 Identities=16% Similarity=0.287 Sum_probs=56.3
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCC---CCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRG---IKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~---~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
+|.||..+|+.+.-.+..++||.+|...|....+ +.....+|+ |--|+|.+ ++||.++||.. +.+|+|
T Consensus 2 kItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLI--y~GkiL~D---d~tL~dy~I~e-~~~Ivv 72 (378)
T TIGR00601 2 TLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLI--YSGKILSD---DKTVREYKIKE-KDFVVV 72 (378)
T ss_pred EEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEE--ECCEECCC---CCcHHHcCCCC-CCEEEE
Confidence 6889999999999999999999999999986655 667788887 66888764 58999999986 355554
No 43
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=92.54 E-value=0.38 Score=37.28 Aligned_cols=61 Identities=21% Similarity=0.241 Sum_probs=48.9
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCC
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTS 565 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~P 565 (575)
+|.||.++ +.+..++..+.|+.+|..-|....+..+...+|+. -.+.+.+ +.||.++|+.+
T Consensus 2 ~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~--~g~~L~d---~~tL~~~~i~~ 62 (64)
T smart00213 2 ELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIY--KGKVLED---DRTLADYNIQD 62 (64)
T ss_pred EEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE--CCEECCC---CCCHHHcCCcC
Confidence 68899998 57888999999999999999866666666777874 3555553 58999999975
No 44
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=92.12 E-value=0.58 Score=36.66 Aligned_cols=66 Identities=20% Similarity=0.310 Sum_probs=50.9
Q ss_pred EECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 502 VRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 502 IRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
||..+|..+...+..+.|+.+|...|....+..+....|+ |-.+.+. .+.||.++|+.+ +..|+|-
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~--~~g~~l~---d~~~l~~~~v~~-~~~i~v~ 67 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLI--YAGKILK---DDKTLSDYGIQD-GSTLHLV 67 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE--ECCcCCC---CcCCHHHCCCCC-CCEEEEE
Confidence 5777899999999999999999999986666666677774 3345554 368999999997 4666653
No 45
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=92.04 E-value=0.67 Score=39.31 Aligned_cols=69 Identities=22% Similarity=0.263 Sum_probs=54.8
Q ss_pred EEEEECCCCCE-EEE-EeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 499 TLLVRMPDGSR-RGR-RFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 499 rIqIRLPDGsR-i~R-RF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
.|-||..+|+. +.- -...++|+.+|...|....+..+...+|+ |=-|.|.+ +.||.+.|+.+ +.+|+|-
T Consensus 2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi--~~Gk~L~D---~~tL~~y~i~~-~~~i~l~ 72 (78)
T cd01797 2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLF--YRGKQMED---GHTLFDYNVGL-NDIIQLL 72 (78)
T ss_pred EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEE--eCCEECCC---CCCHHHcCCCC-CCEEEEE
Confidence 57899999986 333 35678999999999987777778889998 55777764 68999999997 4777663
No 46
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=91.91 E-value=0.69 Score=38.86 Aligned_cols=70 Identities=14% Similarity=0.277 Sum_probs=54.6
Q ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcC-CCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 498 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRP-YPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 498 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~-FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
++|.|++ +|+.+.-.+..++|+.+|..-|....+..+..-+|+-. |=.+.+. .+.||.++|+.+. ..|+|
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~---D~~~L~~~~i~~g-~~i~l 71 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAE---DDVKISALKLKPN-TKIMM 71 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCC---CCcCHHHcCCCCC-CEEEE
Confidence 4688888 88888889999999999999998877788888999852 2233333 2799999999974 55554
No 47
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=91.47 E-value=0.31 Score=45.47 Aligned_cols=37 Identities=30% Similarity=0.453 Sum_probs=33.1
Q ss_pred CcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHH
Q 008174 4 PNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNA 40 (575)
Q Consensus 4 p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~ 40 (575)
.+.+-|.=.|+-||+|...|+..|+++||||.+||-.
T Consensus 83 i~eeDIkLV~eQa~VsreeA~kAL~e~~GDlaeAIm~ 119 (122)
T COG1308 83 ISEEDIKLVMEQAGVSREEAIKALEEAGGDLAEAIMK 119 (122)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 4566788899999999999999999999999999854
No 48
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=91.02 E-value=1.1 Score=37.10 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=52.9
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
.|-||. ++.+.-.+..++||.+|..-|....+..+...+|+ |=-+.+.+ +.||.++|+.+ +++|+|
T Consensus 2 qi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li--~~Gk~L~D---~~tL~~~~i~~-~~tl~l 67 (74)
T cd01793 2 QLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLL--LAGVPLED---DATLGQCGVEE-LCTLEV 67 (74)
T ss_pred EEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEE--ECCeECCC---CCCHHHcCCCC-CCEEEE
Confidence 466776 46778889999999999999987777777888887 55666664 69999999997 577766
No 49
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=90.79 E-value=0.82 Score=37.13 Aligned_cols=69 Identities=19% Similarity=0.339 Sum_probs=52.7
Q ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCC-cCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 498 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKA-GTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 498 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p-~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
++|.|+..+|+.+.-+-..++++..|++......+... ..++|. |=-+.+. .+.|++++||.. +..+-|
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~--fdG~~L~---~~~T~~~~~ied-~d~Idv 70 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLI--FDGKRLD---PNDTPEDLGIED-GDTIDV 70 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEE--ETTEEE----TTSCHHHHT-ST-TEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEE--ECCEEcC---CCCCHHHCCCCC-CCEEEE
Confidence 47899999999999999999999999998876666666 778876 3344444 368999999996 465544
No 50
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=90.39 E-value=1 Score=32.13 Aligned_cols=65 Identities=22% Similarity=0.251 Sum_probs=47.9
Q ss_pred EECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 502 VRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 502 IRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
|++++|.....++..+.|+.+|+.+|....+..+..|.|+...+...- ..++.+.++... ..+.|
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~-~~i~~ 66 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPD-----SLTLEDYGLQDG-DELVL 66 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCC-----CCcHHHcCCCCC-CEEEE
Confidence 677799999999999999999999998666667888999887665421 234456666652 44444
No 51
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=90.18 E-value=1.6 Score=39.89 Aligned_cols=64 Identities=27% Similarity=0.282 Sum_probs=44.7
Q ss_pred ceEEEEECCCCC-EEEEEeCCCCcHHHHHHHHHhcCCC-------CCcCeEEEcCCCCcccCCCCcccchhhcCCCC
Q 008174 497 AVTLLVRMPDGS-RRGRRFLKSNKLQSLFDYIDVGRGI-------KAGTYRLVRPYPRRAFSDGESALTLNELGLTS 565 (575)
Q Consensus 497 ~vrIqIRLPDGs-Ri~RRF~~SDTLqdLydFVd~~~~~-------~p~~F~LvT~FPRR~ft~eD~skTLeElGL~P 565 (575)
.++|.|||.||+ +..-+|..++|+.+|..+|-..... .+...+|+. =-|.|.+ +.||.++++..
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~--~GriL~d---~~tL~~~~~~~ 73 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIY--AGRILED---NKTLSDCRLPS 73 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEE--TTEEE-S---SSBTGGGT--T
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEe--CCeecCC---cCcHHHhCCCC
Confidence 589999999999 8999999999999999999753311 133566763 2345553 78999998764
No 52
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=89.37 E-value=0.13 Score=55.61 Aligned_cols=41 Identities=27% Similarity=0.238 Sum_probs=36.9
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 008174 6 QEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEGD 46 (575)
Q Consensus 6 ~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~~ 46 (575)
.+.|.+||.+||.|+..|.+||+.++||++.|..-++.++-
T Consensus 5 ~~~ls~f~~~t~~se~~~~~~l~s~~~d~~~a~~~~~~~~~ 45 (380)
T KOG2086|consen 5 LDSLSEFRAVTGPSESRARFYLESIYWDREAAHRSELEAFA 45 (380)
T ss_pred hhHHHHHhccCCCCccccccccccCCCchhhhhhhhccccc
Confidence 37899999999999999999999999999999988866543
No 53
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=88.10 E-value=2.4 Score=36.17 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=56.3
Q ss_pred eEEEEECCCCC--EEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcC---CCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 498 VTLLVRMPDGS--RRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRP---YPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 498 vrIqIRLPDGs--Ri~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~---FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
++|.|..++-+ ...+||..+.||.+|..-|....|..+...+|.-- -+.......+..++|...|+.. ...|+|
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~d-g~~i~V 80 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKD-GMRIHV 80 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-ST-TEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCC-CCEEEE
Confidence 67788877664 89999999999999999999877888888777642 1222223345689999999997 578887
Q ss_pred ee
Q 008174 573 EL 574 (575)
Q Consensus 573 E~ 574 (575)
..
T Consensus 81 ~D 82 (87)
T PF14560_consen 81 VD 82 (87)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 54
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=87.16 E-value=1.6 Score=36.33 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=49.3
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 506 DGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 506 DGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
+|+.+.-.+..++||.+|..-|....+..+...+|+ |--+.+.+ +.||.++|+.+ ...|+|
T Consensus 6 ~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~--~~G~~L~d---~~tL~~~~i~~-g~~l~v 66 (76)
T cd01800 6 NGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQ--YEGIFIKD---SNSLAYYNLAN-GTIIHL 66 (76)
T ss_pred CCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE--ECCEEcCC---CCcHHHcCCCC-CCEEEE
Confidence 788888999999999999999987777778888887 33455543 58999999997 467765
No 55
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=86.95 E-value=3.2 Score=35.09 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=52.0
Q ss_pred ECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEee
Q 008174 503 RMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLEL 574 (575)
Q Consensus 503 RLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE~ 574 (575)
+...|+.+.-.|.+++||.+|...|....+..+...+| |--+.+. +...||.++|+.+...+|+|-.
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL---~~G~~L~--dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW---VIGQRLA--RDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE---EcCCeeC--CCcCCHHHcCCCCCCCEEEEEe
Confidence 45678888899999999999999998777777788888 4344443 2468999999995457887754
No 56
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=81.16 E-value=4.4 Score=36.03 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=40.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCC-CCcccchhhcCCCCCceeEEEe
Q 008174 509 RRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSD-GESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 509 Ri~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~-eD~skTLeElGL~PsqaaL~VE 573 (575)
.+.+.|.+.|||..|...+...... ...-+|-.-|=.-.+.. .+..+||+|+||... -+|++|
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~g-Q~vliE 78 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDG-QVVLIE 78 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TT-EEEEEE
T ss_pred HhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCC-CEEEEE
Confidence 6899999999999999998755444 55667765443222221 135789999999985 566666
No 57
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=79.62 E-value=1.7 Score=28.01 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhHHH
Q 008174 205 IEEEMIRAAIEASKQE 220 (575)
Q Consensus 205 ieeemiraaieask~~ 220 (575)
-|+++++.||+.|.++
T Consensus 2 ~Ed~~L~~Al~~S~~e 17 (18)
T PF02809_consen 2 DEDEDLQRALEMSLEE 17 (18)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhhcc
Confidence 4677777777777765
No 58
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=78.21 E-value=8.8 Score=45.64 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008174 415 LEAQRLIREQQDDEYLASLQAD 436 (575)
Q Consensus 415 le~~R~LREEQDeAY~eSLraD 436 (575)
|...+..+++|.++-.+-|+.+
T Consensus 223 La~~qe~eE~qkreeEE~~r~e 244 (1064)
T KOG1144|consen 223 LAKRQEEEERQKREEEERLRRE 244 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443
No 59
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=77.45 E-value=11 Score=32.78 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=46.7
Q ss_pred eEEEEECCCCCE--EEEEeCCCCcHHHHHHHHHhcCC--CCCcCeEEEcCCCCcccCCCCcccchhhcC
Q 008174 498 VTLLVRMPDGSR--RGRRFLKSNKLQSLFDYIDVGRG--IKAGTYRLVRPYPRRAFSDGESALTLNELG 562 (575)
Q Consensus 498 vrIqIRLPDGsR--i~RRF~~SDTLqdLydFVd~~~~--~~p~~F~LvT~FPRR~ft~eD~skTLeElG 562 (575)
++|.||.|+|++ +.-.+..++|+.+|..-|....+ ..+..-+|+ |--|+|.+ +.||.+.+
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLI--y~GKiLkD---~~tL~~~~ 65 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLI--YSGKLLPD---HLKLRDVL 65 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEE--EcCeeccc---hhhHHHHh
Confidence 689999999998 55556899999999999975443 234667777 66778864 58999985
No 60
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.05 E-value=16 Score=43.54 Aligned_cols=29 Identities=14% Similarity=0.041 Sum_probs=16.5
Q ss_pred HHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 008174 9 IDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEGDR 47 (575)
Q Consensus 9 I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~~~ 47 (575)
-.+|-++++..-.+ +=..|-|.||-++=.
T Consensus 19 ~~qF~~Lkp~~gfi----------tg~qArnfflqS~LP 47 (1118)
T KOG1029|consen 19 DAQFGQLKPGQGFI----------TGDQARNFFLQSGLP 47 (1118)
T ss_pred HHHHhccCCCCCcc----------chHhhhhhHHhcCCC
Confidence 45677777665543 223566777665553
No 61
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.49 E-value=14 Score=44.06 Aligned_cols=10 Identities=10% Similarity=-0.220 Sum_probs=6.9
Q ss_pred CCCCcccccc
Q 008174 95 SLLDPSSRRR 104 (575)
Q Consensus 95 ~lldp~~~~~ 104 (575)
+++-|+|+++
T Consensus 104 p~~~p~fg~G 113 (1118)
T KOG1029|consen 104 PSTWPGFGMG 113 (1118)
T ss_pred CCCCCccCCC
Confidence 4567788775
No 62
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=75.16 E-value=7.3 Score=32.82 Aligned_cols=71 Identities=18% Similarity=0.242 Sum_probs=46.2
Q ss_pred ceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCC---CC---cCeEEEcCCCCcccCCCCcccchhhcCCCCCceeE
Q 008174 497 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGI---KA---GTYRLVRPYPRRAFSDGESALTLNELGLTSKQEAL 570 (575)
Q Consensus 497 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~---~p---~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL 570 (575)
.|+|-|..++|+++--....+-++..|..-|-...+. .. ..|.|.+ -..+.|.. +.||.++|+.. ...|
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~-~~g~~L~~---~~tL~~~gV~d-Gd~L 76 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLAR-AGGRPLDP---DQTLADAGVRD-GDVL 76 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG--GGTEEEET---TSBCGGGT--T-T-EE
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEe-cCCcccCC---cCcHhHcCCCC-CCEE
Confidence 5899999988899999999999999988887543322 11 2477773 34445554 79999999997 5777
Q ss_pred EE
Q 008174 571 FL 572 (575)
Q Consensus 571 ~V 572 (575)
++
T Consensus 77 ~L 78 (79)
T PF08817_consen 77 VL 78 (79)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 63
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=73.63 E-value=3.1 Score=29.10 Aligned_cols=19 Identities=47% Similarity=0.525 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhHHHHhhc
Q 008174 206 EEEMIRAAIEASKQEAENV 224 (575)
Q Consensus 206 eeemiraaieask~~~~~~ 224 (575)
|+|||+.||+.|.++.+..
T Consensus 2 EDe~Lq~Ai~lSl~e~e~~ 20 (26)
T smart00726 2 EDEDLQLALELSLQEAEES 20 (26)
T ss_pred hHHHHHHHHHHhHHHhhhc
Confidence 5677777777777776544
No 64
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=71.67 E-value=27 Score=29.97 Aligned_cols=75 Identities=11% Similarity=0.101 Sum_probs=53.0
Q ss_pred eEEEEECCC-CCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCc---ccCCCCcccchhhcCCCCCceeEEEe
Q 008174 498 VTLLVRMPD-GSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRR---AFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 498 vrIqIRLPD-GsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR---~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
++|.|..+. .....|||..+.||..|..=+...-+..+..-+|.- |..+ +-..++..++|...|+.+ ...|+|.
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l-~~~~~~~~~~l~~d~~~L~~y~~~d-g~~IhVv 79 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQL-FDGDDKLVSKLDDDDALLGSYPVDD-GCRIHVI 79 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEE-EcCCCCeEeecCCCccEeeeccCCC-CCEEEEE
Confidence 456666543 446899999999999999988766677777777742 3322 112334588999999997 5777775
Q ss_pred e
Q 008174 574 L 574 (575)
Q Consensus 574 ~ 574 (575)
.
T Consensus 80 D 80 (84)
T cd01789 80 D 80 (84)
T ss_pred e
Confidence 4
No 65
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=71.27 E-value=26 Score=43.09 Aligned_cols=15 Identities=27% Similarity=0.632 Sum_probs=9.0
Q ss_pred CCCCCCCChhhhhHH
Q 008174 357 SDEWGGISSEEHDEA 371 (575)
Q Consensus 357 ~~ewggi~s~e~dea 371 (575)
.+.|||--++|.-|.
T Consensus 423 ~g~~g~r~eke~~ER 437 (1021)
T PTZ00266 423 NGHYGGRVDKDHAER 437 (1021)
T ss_pred cCccccccchhHHHH
Confidence 556777766655333
No 66
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=70.53 E-value=2.1 Score=29.97 Aligned_cols=19 Identities=53% Similarity=0.648 Sum_probs=17.1
Q ss_pred ccchhhhhhhhhhhHHHHH
Q 008174 237 EDVDLAHAVSLSLRTAEQE 255 (575)
Q Consensus 237 ed~d~a~avslsl~~~~~~ 255 (575)
||++|++||.||+.+++..
T Consensus 2 EDe~Lq~Ai~lSl~e~e~~ 20 (26)
T smart00726 2 EDEDLQLALELSLQEAEES 20 (26)
T ss_pred hHHHHHHHHHHhHHHhhhc
Confidence 7889999999999998865
No 67
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=67.91 E-value=23 Score=40.38 Aligned_cols=78 Identities=29% Similarity=0.259 Sum_probs=39.0
Q ss_pred CCCCCCCCCCCCCCCCCccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008174 396 YMQPEGSYPRRVPRPPSPSLEAQ----RLIREQQDDEYLASLQADREKAEARRLMEEEARNAALAEERRKEEETRRKMEE 471 (575)
Q Consensus 396 ~~~~~~~~~~~i~R~~~~~le~~----R~LREEQDeAY~eSLraDrEK~e~Rr~EEE~aRkaaeEeeRrkEEE~~rk~ee 471 (575)
+.-|.+.||-- .++++-+++ -+|-.||.++-++-++..+.-.+.....+|++|++++ +...+++|..++...
T Consensus 371 qkvg~gfffkd---eqkaedema~kraallekqqrraeear~rkqqleae~e~kreearrkaee-er~~keee~arrefi 446 (708)
T KOG3654|consen 371 QKVGLGFFFKD---EQKAEDEMAQKRAALLEKQQRRAEEARRRKQQLEAEKEQKREEARRKAEE-ERAPKEEEVARREFI 446 (708)
T ss_pred cccceeeeecc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-hhcchhhhhhHHHHH
Confidence 33445555543 334443332 2466677777777777666554433333444444444 333455555555444
Q ss_pred HHHHHH
Q 008174 472 QQEYER 477 (575)
Q Consensus 472 ~eeler 477 (575)
+++.++
T Consensus 447 rqey~r 452 (708)
T KOG3654|consen 447 RQEYER 452 (708)
T ss_pred HHHHHH
Confidence 444443
No 68
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=65.62 E-value=30 Score=41.42 Aligned_cols=13 Identities=31% Similarity=0.184 Sum_probs=8.6
Q ss_pred cCCCCCCcceeec
Q 008174 154 THGPDNRGTAIID 166 (575)
Q Consensus 154 ~~gp~~~gtv~~d 166 (575)
+-+=.+.||||..
T Consensus 398 tt~GG~kGTvIrV 410 (1259)
T KOG0163|consen 398 TTKGGFKGTVIRV 410 (1259)
T ss_pred hccCCccceEEEe
Confidence 4455677888764
No 69
>PLN02560 enoyl-CoA reductase
Probab=65.09 E-value=29 Score=36.96 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=50.9
Q ss_pred EEEEECCCCCEE---EEEeCCCCcHHHHHHHHHhcCC-CCCcCeEEEcC----CCCcccCCCCcccchhhcCCCCCceeE
Q 008174 499 TLLVRMPDGSRR---GRRFLKSNKLQSLFDYIDVGRG-IKAGTYRLVRP----YPRRAFSDGESALTLNELGLTSKQEAL 570 (575)
Q Consensus 499 rIqIRLPDGsRi---~RRF~~SDTLqdLydFVd~~~~-~~p~~F~LvT~----FPRR~ft~eD~skTLeElGL~PsqaaL 570 (575)
+|.|+..+|+.+ .-....+.|+.+|..-|....+ ..+..-+|.-. =|+...- +.++||.+.|+.. +++|
T Consensus 2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L--~d~ktL~d~gv~~-gstL 78 (308)
T PLN02560 2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVL--DDSKSLKDYGLGD-GGTV 78 (308)
T ss_pred EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCcccc--CCCCCHHhcCCCC-CceE
Confidence 477788889876 4578899999999999975433 24555666532 1232222 2367999999986 5789
Q ss_pred EEeeC
Q 008174 571 FLELV 575 (575)
Q Consensus 571 ~VE~I 575 (575)
+|.++
T Consensus 79 y~kDL 83 (308)
T PLN02560 79 VFKDL 83 (308)
T ss_pred EEEeC
Confidence 88754
No 70
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=64.87 E-value=22 Score=26.64 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=29.4
Q ss_pred HHHHHHHHhhh-CCCHHHHHHHHHHhcCCHHHHHHHHHh
Q 008174 6 QEAIDTFISIT-GATESVAVQKLEEHSGDLNAAVNAHFS 43 (575)
Q Consensus 6 ~e~I~~F~siT-gas~~~A~q~Le~~~~dL~~Avn~~f~ 43 (575)
++.|++..++- .-+..+-...|++|+||++.||++.+.
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 45566666654 567888888999999999999999864
No 71
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.22 E-value=2.5 Score=44.13 Aligned_cols=42 Identities=17% Similarity=0.311 Sum_probs=36.7
Q ss_pred cHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 008174 5 NQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEGD 46 (575)
Q Consensus 5 ~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~~ 46 (575)
..+.+++||++|.+++++++++|..++|+++.|.+.+|..+.
T Consensus 8 ~~d~~~~~~~~~~~~~~~s~~~~~~~dw~~~~~~~~s~~~~~ 49 (260)
T KOG3077|consen 8 QKDKFEQFMSFTASRKKTSLSCLAACDWNLKYAFNDSYYTNP 49 (260)
T ss_pred HHHHHHhhcccccccchhhhhhhcccccccchhcccchhcch
Confidence 457899999999999999999999999999999777764443
No 72
>COG3122 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.12 E-value=44 Score=33.69 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=20.0
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHH
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLF 524 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLy 524 (575)
.|.+-|+||..+.|-|-...+...|.
T Consensus 128 Di~~nF~d~~kIKrI~V~~l~~~~L~ 153 (215)
T COG3122 128 DIGFNFTDGNKIKRIYVDKLTQAQLI 153 (215)
T ss_pred cceeeccCCCEeEEEEecHHHHHHHh
Confidence 47899999998888877766665543
No 73
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=64.07 E-value=45 Score=38.46 Aligned_cols=12 Identities=33% Similarity=0.415 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 008174 415 LEAQRLIREQQD 426 (575)
Q Consensus 415 le~~R~LREEQD 426 (575)
+++++++-+.+|
T Consensus 185 ~e~Q~qv~qsl~ 196 (591)
T KOG2412|consen 185 LEEQNQVLQSLD 196 (591)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 74
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=62.06 E-value=37 Score=40.66 Aligned_cols=11 Identities=36% Similarity=0.287 Sum_probs=6.0
Q ss_pred CcHHHHHHHHH
Q 008174 518 NKLQSLFDYID 528 (575)
Q Consensus 518 DTLqdLydFVd 528 (575)
.+-.+|+|-|.
T Consensus 1070 wkyaeLRDtIN 1080 (1259)
T KOG0163|consen 1070 WKYAELRDTIN 1080 (1259)
T ss_pred ccHHHHHHhhc
Confidence 45555665553
No 75
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=60.87 E-value=19 Score=29.64 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=43.8
Q ss_pred EECCCCCEEEEEeCCCCcHHHHHHHHHhcCCC-CCcCeEEEc-CCCCcccCCCCcccchhhcCCC
Q 008174 502 VRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGI-KAGTYRLVR-PYPRRAFSDGESALTLNELGLT 564 (575)
Q Consensus 502 IRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~-~p~~F~LvT-~FPRR~ft~eD~skTLeElGL~ 564 (575)
|+|+||+.+.-....+.+.++|++.|....+. ...-|.|.- .-......-.+.+++|.+..-.
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 78999999999999999999999999765444 355677775 1111111112457888877655
No 76
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=59.95 E-value=43 Score=37.82 Aligned_cols=23 Identities=22% Similarity=0.075 Sum_probs=12.0
Q ss_pred HHHHHHhhhCCCHHHHHHHHHHh
Q 008174 8 AIDTFISITGATESVAVQKLEEH 30 (575)
Q Consensus 8 ~I~~F~siTgas~~~A~q~Le~~ 30 (575)
.++.|+.|+|....+..-..+.+
T Consensus 3 ~~d~~~~i~~~~~~~~~~~~e~~ 25 (460)
T KOG1363|consen 3 NWDLVEAIEGVLPQEDGALSEEP 25 (460)
T ss_pred cHhHHHHHhhcccccCccccccc
Confidence 34556666655555544444444
No 77
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=59.75 E-value=20 Score=31.00 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=40.4
Q ss_pred CCCCcHHHHHHHHHhcC--CC-CCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 515 LKSNKLQSLFDYIDVGR--GI-KAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 515 ~~SDTLqdLydFVd~~~--~~-~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
..++|+.+|..-|.... +. .+..++|+ |=-|.+.+ +.||.+.|+.+ +++|++
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLI--y~GKiL~D---~~TL~dygI~~-gstlhL 72 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLI--HCGRKLKD---DQTLDFYGIQS-GSTIHI 72 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEE--eCCcCCCC---CCcHHHcCCCC-CCEEEE
Confidence 56899999999997653 23 36778998 77777764 68999999997 466665
No 78
>PRK09377 tsf elongation factor Ts; Provisional
Probab=58.89 E-value=17 Score=38.57 Aligned_cols=43 Identities=21% Similarity=0.194 Sum_probs=37.5
Q ss_pred CCCCcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHh
Q 008174 1 MVRPNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFS 43 (575)
Q Consensus 1 ma~p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~ 43 (575)
|..=+.++|.+....||+.--...+.|++++||++.|++--=.
T Consensus 1 m~~is~~~IK~LR~~Tgagm~dCKkAL~e~~gD~ekAi~~Lrk 43 (290)
T PRK09377 1 MAAITAALVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRK 43 (290)
T ss_pred CCccCHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4444678999999999999999999999999999999987643
No 79
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=58.48 E-value=36 Score=28.44 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=41.6
Q ss_pred CCCCcHHHHHHHHHhcC-CCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEeeC
Q 008174 515 LKSNKLQSLFDYIDVGR-GIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLELV 575 (575)
Q Consensus 515 ~~SDTLqdLydFVd~~~-~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE~I 575 (575)
..+.|+.+|+..|.... .+.+...+|.-.+..+.|.. +.||.+.|+.. +.+|+|-.+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d---~~tL~~~gv~~-g~~lyvKDL 77 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKD---DDTLVDLGVGA-GATLYVRDL 77 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCC---cccHhhcCCCC-CCEEEEeeC
Confidence 46689999999996432 23456667776677777764 56899999986 578888653
No 80
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=58.24 E-value=26 Score=39.07 Aligned_cols=71 Identities=23% Similarity=0.317 Sum_probs=52.1
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHH----HHHHHHhcCCCCCcCeEEEcCCCCc--ccCCCCcccchhhcCCCCCceeEEE
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQS----LFDYIDVGRGIKAGTYRLVRPYPRR--AFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqd----LydFVd~~~~~~p~~F~LvT~FPRR--~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
-++||-++|.+.. .|..+|+|.. |..|++ .++.+.+|.+.+.---+ .|+. ..++|+.+|||.. .-+|+|
T Consensus 2 i~rfRsk~G~~Rv-e~qe~d~lg~l~~kll~~~~--~n~~~e~~svc~~p~~qG~~~s~-l~dqt~~dlGL~h-GqmLyl 76 (571)
T COG5100 2 IFRFRSKEGQRRV-EVQESDVLGMLSPKLLAFFE--VNYSPEQISVCSAPDGQGEIFSL-LKDQTPDDLGLRH-GQMLYL 76 (571)
T ss_pred eEEEecCCCceee-eccccchhhhhhHHHHhhhc--cCCCccceEEEeCCCCCceeeec-ccccChhhhcccc-CcEEEE
Confidence 3789999997544 7899999874 555554 34778899998754322 3454 5689999999998 578888
Q ss_pred ee
Q 008174 573 EL 574 (575)
Q Consensus 573 E~ 574 (575)
+.
T Consensus 77 ~y 78 (571)
T COG5100 77 EY 78 (571)
T ss_pred Ee
Confidence 74
No 81
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=57.52 E-value=18 Score=27.11 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=28.3
Q ss_pred HHHHHHHhh-hCCCHHHHHHHHHHhcCCHHHHHHHHHh
Q 008174 7 EAIDTFISI-TGATESVAVQKLEEHSGDLNAAVNAHFS 43 (575)
Q Consensus 7 e~I~~F~si-Tgas~~~A~q~Le~~~~dL~~Avn~~f~ 43 (575)
+.|.+...+ =..+..++..-|++|+||++.||+..+.
T Consensus 4 ~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 4 EALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 344444332 5678889999999999999999999864
No 82
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=55.70 E-value=20 Score=38.02 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=35.0
Q ss_pred CcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHH
Q 008174 4 PNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAH 41 (575)
Q Consensus 4 p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~ 41 (575)
=+.++|.+....||+.--...+.|++++||++.|++--
T Consensus 3 isa~~IK~LRe~Tgagm~dCKkAL~e~~gDiekAi~~L 40 (290)
T TIGR00116 3 ITAQLVKELRERTGAGMMDCKKALTEANGDFEKAIKNL 40 (290)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 35688999999999999999999999999999999866
No 83
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=54.71 E-value=20 Score=35.92 Aligned_cols=39 Identities=23% Similarity=0.252 Sum_probs=35.4
Q ss_pred cHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHh
Q 008174 5 NQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFS 43 (575)
Q Consensus 5 ~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~ 43 (575)
+.++|.+....||++-....+.|.+++||++.|++--=.
T Consensus 4 ~a~~ik~LR~~tga~~~~ck~AL~~~~gd~~~A~~~lr~ 42 (198)
T PRK12332 4 TAKLVKELREKTGAGMMDCKKALEEANGDMEKAIEWLRE 42 (198)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 468899999999999999999999999999999987643
No 84
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=54.35 E-value=26 Score=32.31 Aligned_cols=55 Identities=18% Similarity=0.174 Sum_probs=43.2
Q ss_pred EeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 513 RFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 513 RF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
.-.+++||.+|..-|....+..+..=+|+.. -+.|. |.+.||.++||.+ .+.|++
T Consensus 20 ~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d--G~~L~--DDsrTLssyGv~s-gSvl~L 74 (107)
T cd01795 20 LVSANQTLKELKIQIMHAFSVAPFDQNLSID--GKILS--DDCATLGTLGVIP-ESVILL 74 (107)
T ss_pred EeCccccHHHHHHHHHHHhcCCcccceeeec--Cceec--cCCccHHhcCCCC-CCEEEE
Confidence 3678899999999998776777777788876 33555 4689999999997 477766
No 85
>CHL00098 tsf elongation factor Ts
Probab=54.06 E-value=21 Score=35.97 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=33.7
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 008174 6 QEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHF 42 (575)
Q Consensus 6 ~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f 42 (575)
.++|.+....||++--...+.|.+++||++.|++--=
T Consensus 2 a~~ik~LR~~Tgag~~dck~AL~e~~gd~~~A~~~Lr 38 (200)
T CHL00098 2 AELVKELRDKTGAGMMDCKKALQEANGDFEKALESLR 38 (200)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4789999999999999999999999999999997653
No 86
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=53.44 E-value=45 Score=40.10 Aligned_cols=11 Identities=18% Similarity=0.202 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 008174 415 LEAQRLIREQQ 425 (575)
Q Consensus 415 le~~R~LREEQ 425 (575)
...++.|-..|
T Consensus 217 ~~~qe~La~~q 227 (1064)
T KOG1144|consen 217 RAMQEALAKRQ 227 (1064)
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 87
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=51.41 E-value=90 Score=37.00 Aligned_cols=15 Identities=13% Similarity=0.100 Sum_probs=8.3
Q ss_pred hhhcCCCCCceeEEEe
Q 008174 558 LNELGLTSKQEALFLE 573 (575)
Q Consensus 558 LeElGL~PsqaaL~VE 573 (575)
...+.+..+ ++++|+
T Consensus 456 ~~~adf~~s-a~kpve 470 (811)
T KOG4364|consen 456 CEEADFDGS-ACKPVE 470 (811)
T ss_pred ceecccccc-cceeec
Confidence 345556654 566654
No 88
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=51.08 E-value=27 Score=37.34 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=37.6
Q ss_pred CCCCcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHH
Q 008174 1 MVRPNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAH 41 (575)
Q Consensus 1 ma~p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~ 41 (575)
|+.=+...|......|||.--...+.|++++||++.||+--
T Consensus 1 m~~ita~~VKeLRe~TgAGMmdCKkAL~E~~Gd~EkAie~L 41 (296)
T COG0264 1 MAEITAALVKELREKTGAGMMDCKKALEEANGDIEKAIEWL 41 (296)
T ss_pred CCcccHHHHHHHHHHhCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 66667889999999999999999999999999999999865
No 89
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=50.44 E-value=1.1e+02 Score=28.75 Aligned_cols=68 Identities=19% Similarity=0.157 Sum_probs=46.5
Q ss_pred ceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCC-CcCeEEEcCCCCccc-CCCCcccchhhcCCC
Q 008174 497 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIK-AGTYRLVRPYPRRAF-SDGESALTLNELGLT 564 (575)
Q Consensus 497 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~-p~~F~LvT~FPRR~f-t~eD~skTLeElGL~ 564 (575)
.+.|.|.|+||+.+.-++..+.++++|.+-|....+.. ..-|.|...-+.... ...+...+|.+....
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 46899999999999999999999999999997555543 345777643332211 111345666666543
No 90
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=48.93 E-value=1.6e+02 Score=31.54 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008174 416 EAQRLIREQQDDEYLASLQADREKAEAR 443 (575)
Q Consensus 416 e~~R~LREEQDeAY~eSLraDrEK~e~R 443 (575)
..++-|.|=.+++=++.|++.+..-+++
T Consensus 141 tlEQAl~EV~EEeEL~~lr~~q~~fe~~ 168 (291)
T PF06098_consen 141 TLEQALMEVMEEEELAALRRQQRAFEEL 168 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667767777777777777664433
No 91
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=47.77 E-value=1.5e+02 Score=34.54 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=6.9
Q ss_pred hhHHHHHHHHHhCCCC
Q 008174 368 HDEAVMLEAAMFGGIP 383 (575)
Q Consensus 368 ~dea~mleaa~~g~~p 383 (575)
|....||-.-+.-+++
T Consensus 117 ~e~~~~l~~L~~~~~~ 132 (591)
T KOG2412|consen 117 HENEQDLNKLGLKESA 132 (591)
T ss_pred cchhhhHHHHHHhhcc
Confidence 4444444444444443
No 92
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=47.64 E-value=2.9e+02 Score=27.23 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=20.0
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008174 412 SPSLEAQRLIREQQDDEYLASLQADREK 439 (575)
Q Consensus 412 ~~~le~~R~LREEQDeAY~eSLraDrEK 439 (575)
.+..-..|..|.+...+|+..+.+-.+-
T Consensus 42 Dpa~~eEre~rR~kq~E~q~ai~~QieE 69 (157)
T PF15236_consen 42 DPAQIEERERRRQKQLEHQRAIKQQIEE 69 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556778888889999988876543
No 93
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=46.54 E-value=1.3e+02 Score=31.18 Aligned_cols=23 Identities=9% Similarity=0.153 Sum_probs=16.6
Q ss_pred CCCEEEEEeCCCCcHHHHHHHHH
Q 008174 506 DGSRRGRRFLKSNKLQSLFDYID 528 (575)
Q Consensus 506 DGsRi~RRF~~SDTLqdLydFVd 528 (575)
.+.+..+.......-..|-.|..
T Consensus 169 ~~~~~~~~~~~e~a~~~~q~W~~ 191 (264)
T PF13904_consen 169 QAAKPEREVSQEEAKQRYQEWER 191 (264)
T ss_pred cccccccccCHHHHHHHHHHHHH
Confidence 55667777777776677888874
No 94
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=45.68 E-value=52 Score=27.62 Aligned_cols=55 Identities=13% Similarity=0.153 Sum_probs=40.3
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCC
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGE 553 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD 553 (575)
.+.|=||||++..=.-.+..||+++..-+-..+++.+..+.+...-.++.+..+.
T Consensus 2 ~~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~ 56 (71)
T PF02196_consen 2 TCRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQ 56 (71)
T ss_dssp EEEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTS
T ss_pred eEEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCC
Confidence 4678899999999999999999999988877778888887777544666665443
No 95
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.59 E-value=1.7e+02 Score=31.05 Aligned_cols=11 Identities=45% Similarity=0.371 Sum_probs=7.4
Q ss_pred HHHHHHHHHHc
Q 008174 474 EYERQLAAKEA 484 (575)
Q Consensus 474 eler~l~~K~a 484 (575)
+-+.+++||.+
T Consensus 172 eheEylkmKaa 182 (299)
T KOG3054|consen 172 EHEEYLKMKAA 182 (299)
T ss_pred HHHHHHHHHhh
Confidence 45677888764
No 96
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=45.26 E-value=77 Score=33.70 Aligned_cols=26 Identities=15% Similarity=0.372 Sum_probs=15.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008174 414 SLEAQRLIREQQDDEYLASLQADREK 439 (575)
Q Consensus 414 ~le~~R~LREEQDeAY~eSLraDrEK 439 (575)
.+.-...+|++..+++.+...+.+..
T Consensus 256 ~~~K~~k~R~~~~~~~~K~~~~~r~E 281 (321)
T PF07946_consen 256 AKKKAKKNREEEEEKILKEAHQERQE 281 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777655544433
No 97
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.10 E-value=1.4e+02 Score=31.61 Aligned_cols=9 Identities=33% Similarity=0.796 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q 008174 520 LQSLFDYID 528 (575)
Q Consensus 520 LqdLydFVd 528 (575)
|.+..+||.
T Consensus 202 l~eFv~YIk 210 (299)
T KOG3054|consen 202 LSEFVEYIK 210 (299)
T ss_pred HHHHHHHHH
Confidence 444555554
No 98
>PTZ00121 MAEBL; Provisional
Probab=42.43 E-value=1.4e+02 Score=38.68 Aligned_cols=25 Identities=4% Similarity=0.050 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008174 415 LEAQRLIREQQDDEYLASLQADREK 439 (575)
Q Consensus 415 le~~R~LREEQDeAY~eSLraDrEK 439 (575)
+..+-..|.+|-+.-.+.-++|..|
T Consensus 1116 ~~ee~~~r~e~arr~eeARrae~~R 1140 (2084)
T PTZ00121 1116 KAEEAKKKAEDARKAEEARKAEDAR 1140 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3334445555555555555555444
No 99
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=41.24 E-value=80 Score=26.48 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=39.2
Q ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEE
Q 008174 504 MPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALF 571 (575)
Q Consensus 504 LPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~ 571 (575)
.++|.|..-+..++.+|.+|..=+-.+.++.+..|.|... ++.+. .+.++.=+||.+ ++.|-
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~--~k~ld---lslp~R~snL~n-~akLe 64 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHN--NKPLD---LSLPFRLSNLPN-NAKLE 64 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEET--TEEES---SS-BHHHH---S-S-EEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEEC--CEEec---cccceeecCCCC-CCEEe
Confidence 3789999999999999999999886677888889999853 46554 588999999987 57664
No 100
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=41.09 E-value=2.3e+02 Score=31.92 Aligned_cols=22 Identities=14% Similarity=-0.000 Sum_probs=11.3
Q ss_pred CCCCccHHHHHHHHHHHHHHHH
Q 008174 409 RPPSPSLEAQRLIREQQDDEYL 430 (575)
Q Consensus 409 R~~~~~le~~R~LREEQDeAY~ 430 (575)
.........+|..+.+.+.+-.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~ 302 (429)
T PRK00247 281 DEFKEHHAEQRAQYREKQKEKK 302 (429)
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666555554433
No 101
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=40.52 E-value=71 Score=34.79 Aligned_cols=63 Identities=17% Similarity=0.251 Sum_probs=50.4
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCC--CCCcCeEEEcCCCCcccCCCCcccchhhcCCCCC
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRG--IKAGTYRLVRPYPRRAFSDGESALTLNELGLTSK 566 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~--~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~Ps 566 (575)
+|-||.-.|.++.-++.+++||..|+.=|....+ +....-+|+ |=.|+|.+ ++|+.+.++.-+
T Consensus 2 ~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLI--y~GkiL~D---~~tv~Eykv~E~ 66 (340)
T KOG0011|consen 2 KLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLI--YSGKILKD---ETTVGEYKVKEK 66 (340)
T ss_pred eeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheee--ecceeccC---CcchhhhccccC
Confidence 5789999999999999999999999999987665 323333454 66777775 799999999853
No 102
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.61 E-value=80 Score=34.66 Aligned_cols=33 Identities=30% Similarity=0.352 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008174 415 LEAQRLIREQQDDEYLASLQADREKAEARRLMEEE 449 (575)
Q Consensus 415 le~~R~LREEQDeAY~eSLraDrEK~e~Rr~EEE~ 449 (575)
+.+.+..++++..+ +.|+.-++|++++++++.+
T Consensus 125 ia~~k~~kde~lkE--~e~r~~ee~~e~~~lQe~~ 157 (469)
T KOG3878|consen 125 IAAVKQDKDETLKE--KELRLMEEKKEARELQENA 157 (469)
T ss_pred HHHhhhhhhhHHHH--HHHHHHHhhhcchhHHHHH
Confidence 34445555555552 3344444444444444433
No 103
>PLN03086 PRLI-interacting factor K; Provisional
Probab=39.56 E-value=1.9e+02 Score=33.75 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008174 415 LEAQRLIREQQDDEYLASLQADREKA 440 (575)
Q Consensus 415 le~~R~LREEQDeAY~eSLraDrEK~ 440 (575)
+.++.+.|||-++.-++-|++++||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (567)
T PLN03086 7 RAREKLEREQRERKQRAKLKLERERK 32 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777764
No 104
>PLN02316 synthase/transferase
Probab=37.97 E-value=1.8e+02 Score=36.24 Aligned_cols=22 Identities=9% Similarity=0.037 Sum_probs=13.5
Q ss_pred CCCCccHHHHHHHHHHHHHHHH
Q 008174 409 RPPSPSLEAQRLIREQQDDEYL 430 (575)
Q Consensus 409 R~~~~~le~~R~LREEQDeAY~ 430 (575)
.......+.+..|++++-+++.
T Consensus 238 ~~~~~~~~~~~~l~ee~~~e~~ 259 (1036)
T PLN02316 238 EGGMDEHSFEDFLLEEKRRELE 259 (1036)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 3445566666777777666664
No 105
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=37.23 E-value=96 Score=26.09 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=33.4
Q ss_pred HHHHHHHhhhCC-CHHHHHHHHHHhcCCHHHHHHHHHh
Q 008174 7 EAIDTFISITGA-TESVAVQKLEEHSGDLNAAVNAHFS 43 (575)
Q Consensus 7 e~I~~F~siTga-s~~~A~q~Le~~~~dL~~Avn~~f~ 43 (575)
..|+..-.|||+ |+..--.-|.+++.|-|+|++-..+
T Consensus 7 k~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 7 KTVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 568888899999 9999999999999999999998754
No 106
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=37.16 E-value=1.3e+02 Score=35.33 Aligned_cols=16 Identities=44% Similarity=0.387 Sum_probs=9.4
Q ss_pred ccccccccccCCCCCC
Q 008174 308 PLVRHRSIHTSSGSGE 323 (575)
Q Consensus 308 pl~r~r~r~~~~~~~~ 323 (575)
|=-.+|+|-+-+|+..
T Consensus 549 pGpsnRsR~tksgsRG 564 (940)
T KOG4661|consen 549 PGPSNRSRSTKSGSRG 564 (940)
T ss_pred CCccccccccccCCCc
Confidence 3335666666666654
No 107
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=36.95 E-value=27 Score=37.36 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=33.9
Q ss_pred HHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhc
Q 008174 8 AIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSE 44 (575)
Q Consensus 8 ~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~ 44 (575)
..-.|-.||.+.++.|...|..++|++..|++.||+.
T Consensus 28 ll~efa~~~s~dea~aq~~l~~~dw~~~ral~~~~~s 64 (349)
T KOG2756|consen 28 LCVEFASVASCDAAVAQCFLAENDWEMERALNSYFEP 64 (349)
T ss_pred HHHHHHHhhhhHHHhHHHHhhcchhHHHHHHHhhcCc
Confidence 4557889999999999999999999999999999983
No 108
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=35.79 E-value=45 Score=35.11 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=30.8
Q ss_pred HHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhc
Q 008174 8 AIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSE 44 (575)
Q Consensus 8 ~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~ 44 (575)
++.-.|.+||++...|.+.|++.+|++--||--....
T Consensus 238 a~~i~~~~~~~~~~~a~~~l~~~~~~vk~a~~~~~~~ 274 (299)
T PRK05441 238 AVRIVMEATGVSREEAEAALEAADGSVKLAIVMILTG 274 (299)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHhCCCcHHHHHHHHhC
Confidence 3445789999999999999999999999998765443
No 109
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=34.70 E-value=1e+02 Score=26.27 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=37.9
Q ss_pred EEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCC
Q 008174 500 LLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPY 544 (575)
Q Consensus 500 IqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~F 544 (575)
+.|=||||++..=.-.+..||.++..=+-..+++.+..|.|....
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 456799999999999999999999988877788888888777543
No 110
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=34.32 E-value=92 Score=35.55 Aligned_cols=70 Identities=19% Similarity=0.317 Sum_probs=51.8
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
..++|.||.|+. +..-.-..+.+|+.+..-|....+..++.-+|+ |=-|+|.+ ..||...||.. ..+++|
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLI--faGrILKD---~dTL~~~gI~D-g~TvHL 83 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLI--YAGRILKD---DDTLKQYGIQD-GHTVHL 83 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeee--ecCccccC---hhhHHHcCCCC-CcEEEE
Confidence 468999999999 566666778899999888865434444444554 88888884 68999999997 455554
No 111
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=31.06 E-value=60 Score=34.18 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=29.6
Q ss_pred HHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHh
Q 008174 8 AIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFS 43 (575)
Q Consensus 8 ~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~ 43 (575)
++.-.+.+||+|..+|.++|++.+|++--||=-...
T Consensus 233 a~~i~~~~~~~~~~~a~~~l~~~~~~vk~Ai~~~~~ 268 (291)
T TIGR00274 233 AVRIVRQATDCNKELAEQTLLAADQNVKLAIVMILS 268 (291)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHhCCCcHHHHHHHHh
Confidence 345578889999999999999999999888865543
No 112
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=30.56 E-value=2.4e+02 Score=30.56 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=9.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 008174 21 SVAVQKLEEHSGDLNAAVNAH 41 (575)
Q Consensus 21 ~~A~q~Le~~~~dL~~Avn~~ 41 (575)
++|..||-.-.-|++.|---|
T Consensus 6 ~tald~lgseaedf~kaq~ly 26 (445)
T KOG2891|consen 6 ATALDDLGSEAEDFCKAQGLY 26 (445)
T ss_pred hhHHhhhhhHHHhhhhhccee
Confidence 345555543334455554434
No 113
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=30.04 E-value=4.4e+02 Score=32.42 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=18.8
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 008174 416 EAQRLIREQ----QDDEYLASLQADREKAEARR 444 (575)
Q Consensus 416 e~~R~LREE----QDeAY~eSLraDrEK~e~Rr 444 (575)
+-.|.|..+ -..+|++.++..++++++.+
T Consensus 562 E~krilaRk~liE~rKe~~E~~~~~re~Eea~~ 594 (988)
T KOG2072|consen 562 EHKRILARKSLIEKRKEDLEKQNVEREAEEAQE 594 (988)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 444444443 46678888888888866543
No 114
>PTZ00121 MAEBL; Provisional
Probab=29.92 E-value=3.1e+02 Score=35.74 Aligned_cols=11 Identities=73% Similarity=1.374 Sum_probs=5.4
Q ss_pred CCCCC--CCcccc
Q 008174 92 NPFSL--LDPSSR 102 (575)
Q Consensus 92 ~pf~l--ldp~~~ 102 (575)
+||++ +||.-+
T Consensus 760 ~~~~~k~~d~~tr 772 (2084)
T PTZ00121 760 NPFSMKELDPKNR 772 (2084)
T ss_pred Cccchhhcccccc
Confidence 45555 555443
No 115
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=29.84 E-value=1.3e+02 Score=31.90 Aligned_cols=16 Identities=31% Similarity=0.177 Sum_probs=10.4
Q ss_pred CCCCCCCCccccccccC
Q 008174 91 LNPFSLLDPSSRRRFFD 107 (575)
Q Consensus 91 ~~pf~lldp~~~~~~f~ 107 (575)
.|||++| =+|..++|.
T Consensus 92 qdl~~~l-~~~i~~~~~ 107 (321)
T PF07946_consen 92 QDLFSWL-FEFILPFFF 107 (321)
T ss_pred cCHHHHH-HHHHHhhcc
Confidence 4888888 555555544
No 116
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=29.51 E-value=1e+02 Score=27.63 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=31.6
Q ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCC
Q 008174 498 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGI 533 (575)
Q Consensus 498 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~ 533 (575)
+.|.|=||||+++.-+-.++++-.+||.-+....+.
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L 37 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGM 37 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCC
Confidence 578999999999999999999999999998655554
No 117
>PLN03086 PRLI-interacting factor K; Provisional
Probab=28.47 E-value=1.8e+02 Score=33.87 Aligned_cols=17 Identities=12% Similarity=-0.085 Sum_probs=8.0
Q ss_pred EEeCCCCcHHHHHHHHH
Q 008174 512 RRFLKSNKLQSLFDYID 528 (575)
Q Consensus 512 RRF~~SDTLqdLydFVd 528 (575)
+-|.+..-.-.|=.||.
T Consensus 144 lEF~A~EG~v~lP~wm~ 160 (567)
T PLN03086 144 LEFTAEEGSVGLPPHVW 160 (567)
T ss_pred EEEEcCCCeEEcCHHHH
Confidence 44555444444444444
No 118
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=27.48 E-value=5.4e+02 Score=28.38 Aligned_cols=8 Identities=38% Similarity=0.812 Sum_probs=3.9
Q ss_pred CCCCCChh
Q 008174 359 EWGGISSE 366 (575)
Q Consensus 359 ewggi~s~ 366 (575)
+||-|-+.
T Consensus 63 q~~r~q~Q 70 (387)
T COG3064 63 QYGRIQSQ 70 (387)
T ss_pred HHHHHHHH
Confidence 45555443
No 119
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=27.35 E-value=74 Score=33.58 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=29.9
Q ss_pred HHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHh
Q 008174 8 AIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFS 43 (575)
Q Consensus 8 ~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~ 43 (575)
++.-.+.+||++...|.+.|++.+|++--||--...
T Consensus 234 a~~i~~~~~~~~~~~a~~~l~~~~~~vk~ai~~~~~ 269 (296)
T PRK12570 234 AVRIVMQATGCSEDEAKELLKESDNDVKLAILMILT 269 (296)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHhCCccHHHHHHHHh
Confidence 345578889999999999999999999999875543
No 120
>PF04221 RelB: RelB antitoxin; InterPro: IPR007337 Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes [, ]. RelB stably binds RelE, presumably deactivating it.; PDB: 2KC8_B 2K29_A.
Probab=27.17 E-value=74 Score=27.28 Aligned_cols=27 Identities=26% Similarity=0.156 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 008174 20 ESVAVQKLEEHSGDLNAAVNAHFSEGD 46 (575)
Q Consensus 20 ~~~A~q~Le~~~~dL~~Avn~~f~~~~ 46 (575)
...|...|+++|.++..|||-||...-
T Consensus 13 K~~a~~il~~~Glt~s~ai~~fl~qiv 39 (83)
T PF04221_consen 13 KEEAEAILEELGLTLSDAINMFLKQIV 39 (83)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 457899999999999999999998654
No 121
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=26.52 E-value=98 Score=33.72 Aligned_cols=34 Identities=29% Similarity=0.322 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHH
Q 008174 6 QEAIDTFISITGATESVAVQKLEEHSGDLNAAVN 39 (575)
Q Consensus 6 ~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn 39 (575)
..+|.+..+=||+|-.--.+.|+++||||..|..
T Consensus 47 ~allk~LR~kTgas~~ncKkALee~~gDl~~A~~ 80 (340)
T KOG1071|consen 47 KALLKKLREKTGASMVNCKKALEECGGDLVLAEE 80 (340)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhCCcHHHHHH
Confidence 5789999999999999999999999999988764
No 122
>PLN02316 synthase/transferase
Probab=25.11 E-value=2.3e+02 Score=35.39 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=8.6
Q ss_pred ccchhhhhhhhhhhH
Q 008174 237 EDVDLAHAVSLSLRT 251 (575)
Q Consensus 237 ed~d~a~avslsl~~ 251 (575)
+|+.|.+-+.|+++.
T Consensus 109 ~~~~~~~~~~~~~~~ 123 (1036)
T PLN02316 109 DDDSLDRKLKLEREN 123 (1036)
T ss_pred chHHHHHHhhhhHHH
Confidence 455566666666553
No 123
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=24.94 E-value=6.7e+02 Score=28.40 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=14.4
Q ss_pred EEEEECC-CCCEEEEEeCCCCcHH
Q 008174 499 TLLVRMP-DGSRRGRRFLKSNKLQ 521 (575)
Q Consensus 499 rIqIRLP-DGsRi~RRF~~SDTLq 521 (575)
+-++.+| +| ++.|||-..+.-.
T Consensus 296 ~G~l~~PV~G-~il~rFG~~~~gg 318 (420)
T COG4942 296 RGQLAWPVTG-RILRRFGQADGGG 318 (420)
T ss_pred cCCcCCCCCC-cHHHHhcccCCCC
Confidence 3455566 55 6888998776655
No 124
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=24.59 E-value=5.4e+02 Score=31.71 Aligned_cols=7 Identities=29% Similarity=0.871 Sum_probs=4.6
Q ss_pred CccCCCC
Q 008174 65 DFMDIDD 71 (575)
Q Consensus 65 d~m~~dd 71 (575)
-+|||++
T Consensus 342 r~~e~e~ 348 (988)
T KOG2072|consen 342 RLIEIED 348 (988)
T ss_pred ccccccc
Confidence 3677775
No 125
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=23.69 E-value=1.9e+02 Score=23.62 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=30.1
Q ss_pred HHHHHHHh-hhCCCHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 008174 7 EAIDTFIS-ITGATESVAVQKLEEHSGDLNAAVNAHFSEGD 46 (575)
Q Consensus 7 e~I~~F~s-iTgas~~~A~q~Le~~~~dL~~Avn~~f~~~~ 46 (575)
++|.+-.. +-|-|..+-++-|.+.+.|+|.|||..++-.|
T Consensus 11 dlI~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRDd 51 (53)
T PF11547_consen 11 DLINQAQVVLQGKSRNVIIRELQRTNLDVNLAVNNLLSRDD 51 (53)
T ss_dssp HHHHHHHHHSTTS-HHHHHHHHHHTTT-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhcccHHHHHHHHhcccc
Confidence 45655543 57999999999999999999999999876443
No 126
>COG1422 Predicted membrane protein [Function unknown]
Probab=22.88 E-value=2.9e+02 Score=28.24 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHH
Q 008174 429 YLASLQADREKAEA 442 (575)
Q Consensus 429 Y~eSLraDrEK~e~ 442 (575)
+...+-.|+||-++
T Consensus 63 i~~~~liD~ekm~~ 76 (201)
T COG1422 63 ILQKLLIDQEKMKE 76 (201)
T ss_pred HHHHHhccHHHHHH
Confidence 45566778888543
No 127
>smart00455 RBD Raf-like Ras-binding domain.
Probab=22.34 E-value=3e+02 Score=23.09 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=36.7
Q ss_pred EEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEc
Q 008174 500 LLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVR 542 (575)
Q Consensus 500 IqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT 542 (575)
+.+=||||++..=.-.+..||.++..=+-..+++.+..+.|..
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~ 44 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRL 44 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence 3566999999999999999999998888777888888887775
No 128
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=21.23 E-value=1.1e+02 Score=32.64 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=25.3
Q ss_pred HHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 008174 8 AIDTFISITGATESVAVQKLEEHSGDLNAAVNAHF 42 (575)
Q Consensus 8 ~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f 42 (575)
++.=.|.+||++...|.++|++.++++--||=-..
T Consensus 236 a~RIv~~aT~~~~~~A~~~L~~~~~~vK~AIvm~~ 270 (298)
T COG2103 236 AVRIVMEATGCSAEEAEALLEEAGGNVKLAIVMLL 270 (298)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCccHhHHHHHH
Confidence 34556777888888888888888888777765443
No 129
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=20.39 E-value=1.9e+02 Score=25.41 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=32.7
Q ss_pred EECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEE
Q 008174 502 VRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLV 541 (575)
Q Consensus 502 IRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~Lv 541 (575)
|-||||.+..-...++.|+.+|..-+-..+++.|..|-|-
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lr 43 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLR 43 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeE
Confidence 5699999999999999999999998866667776665443
No 130
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=20.28 E-value=8.2e+02 Score=26.66 Aligned_cols=6 Identities=50% Similarity=0.783 Sum_probs=2.3
Q ss_pred HHHHHH
Q 008174 210 IRAAIE 215 (575)
Q Consensus 210 iraaie 215 (575)
+|-|.|
T Consensus 178 lr~a~e 183 (445)
T KOG2891|consen 178 LRKAFE 183 (445)
T ss_pred HHHHHH
Confidence 333333
Done!