Query 008174
Match_columns 575
No_of_seqs 244 out of 974
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 19:54:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008174.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008174hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cr5_A Reproduction 8; UBX dom 99.8 1.9E-21 6.5E-26 171.3 9.8 90 483-575 9-98 (109)
2 2dzk_A UBX domain-containing p 99.8 1.3E-19 4.4E-24 159.9 10.9 85 490-575 6-90 (109)
3 3qx1_A FAS-associated factor 1 99.8 2E-19 7E-24 150.8 10.6 79 494-574 4-82 (84)
4 1wj4_A KIAA0794 protein; UBX d 99.8 7.8E-19 2.7E-23 158.5 10.4 83 491-575 37-119 (124)
5 1s3s_G P47 protein; AAA ATPase 99.6 4E-16 1.4E-20 141.1 9.1 76 495-574 50-126 (127)
6 1v92_A NSFL1 cofactor P47; 3-h 99.1 3E-11 1E-15 90.6 5.0 44 1-45 2-45 (46)
7 2dal_A Protein KIAA0794; FAS a 99.0 1.8E-10 6.2E-15 92.6 5.2 45 4-48 14-58 (62)
8 2dzl_A Protein FAM100B; UBA-li 99.0 1.7E-10 5.8E-15 94.1 4.1 43 4-46 16-58 (66)
9 2dam_A ETEA protein; KIAA0887, 99.0 6.8E-10 2.3E-14 90.7 6.3 43 5-47 18-61 (67)
10 3e21_A HFAF1, FAS-associated f 98.9 3.8E-10 1.3E-14 86.0 3.1 39 5-43 5-44 (45)
11 2kzr_A Ubiquitin thioesterase 98.5 1E-07 3.5E-12 79.5 5.5 74 499-573 2-75 (86)
12 3bq3_A Defective in cullin ned 98.5 7.4E-08 2.5E-12 97.3 4.2 47 1-47 11-57 (270)
13 1ttn_A DC-UBP, dendritic cell- 97.1 0.0016 5.6E-08 56.0 8.4 81 487-573 13-93 (106)
14 2pjh_A Protein NPL4, nuclear p 97.0 0.00054 1.8E-08 57.1 4.7 75 498-575 5-80 (80)
15 1wj7_A Hypothetical protein (R 96.9 0.0011 3.7E-08 58.7 5.9 40 6-45 40-79 (104)
16 1z96_A DNA-damage, UBA-domain 96.9 0.0013 4.3E-08 47.4 5.1 36 6-42 5-40 (40)
17 2dzi_A Ubiquitin-like protein 96.7 0.0085 2.9E-07 47.8 9.3 72 495-572 5-76 (81)
18 4gew_A 5'-tyrosyl-DNA phosphod 96.7 0.00079 2.7E-08 69.1 3.7 40 5-44 45-84 (362)
19 1ndd_A NEDD8, protein (ubiquit 96.7 0.0066 2.3E-07 47.5 8.0 69 499-573 2-70 (76)
20 1wju_A NEDD8 ultimate buster-1 96.7 0.0061 2.1E-07 53.3 8.4 73 494-572 12-88 (100)
21 3mtn_B UBA80, ubcep1, ubiquiti 96.6 0.0073 2.5E-07 48.5 8.1 71 497-573 3-73 (85)
22 3a9j_A Ubiquitin; protein comp 96.5 0.008 2.7E-07 47.1 7.7 69 499-573 2-70 (76)
23 3v6c_B Ubiquitin; structural g 96.5 0.014 4.8E-07 48.4 9.0 72 495-572 15-86 (91)
24 1wh3_A 59 kDa 2'-5'-oligoadeny 96.4 0.014 4.9E-07 47.4 8.9 72 496-573 6-77 (87)
25 2bwf_A Ubiquitin-like protein 96.4 0.011 3.9E-07 46.6 7.6 69 498-573 5-73 (77)
26 1yx5_B Ubiquitin; proteasome, 96.3 0.014 4.7E-07 49.1 8.4 69 499-573 2-70 (98)
27 2hj8_A Interferon-induced 17 k 96.3 0.015 5.2E-07 48.0 8.5 71 497-573 4-74 (88)
28 3dbh_I NEDD8; cell cycle, acti 96.3 0.017 5.9E-07 46.8 8.6 73 494-572 9-81 (88)
29 1wjn_A Tubulin-folding protein 96.3 0.018 6E-07 48.7 8.7 79 495-574 7-91 (97)
30 2wyq_A HHR23A, UV excision rep 96.1 0.028 9.7E-07 45.3 8.9 72 496-573 4-78 (85)
31 3phx_B Ubiquitin-like protein 96.1 0.027 9.3E-07 45.1 8.5 70 497-572 4-73 (79)
32 4hcn_B Polyubiquitin, ubiquiti 96.1 0.017 5.7E-07 48.8 7.5 72 495-572 20-91 (98)
33 3k9o_B Ubiquitin, UBB+1; E2-25 96.0 0.02 6.9E-07 47.5 7.7 70 498-573 2-71 (96)
34 2g3q_A Protein YBL047C; endocy 96.0 0.0096 3.3E-07 43.9 5.0 40 3-43 2-41 (43)
35 4dwf_A HLA-B-associated transc 95.9 0.03 1E-06 46.0 8.4 70 496-572 4-73 (90)
36 1uel_A HHR23B, UV excision rep 95.9 0.034 1.2E-06 46.7 8.9 69 499-573 2-73 (95)
37 1wyw_B Ubiquitin-like protein 95.8 0.021 7.2E-07 48.3 7.2 72 495-572 19-90 (97)
38 1wy8_A NP95-like ring finger p 95.8 0.049 1.7E-06 44.5 9.2 72 495-572 5-78 (89)
39 1j8c_A Ubiquitin-like protein 95.8 0.048 1.6E-06 48.7 9.7 72 495-573 30-101 (125)
40 2uyz_B Small ubiquitin-related 95.8 0.026 8.9E-07 45.2 7.2 70 497-572 3-72 (79)
41 2faz_A Ubiquitin-like containi 95.8 0.029 1E-06 44.6 7.4 70 497-572 2-73 (78)
42 3n3k_B Ubiquitin; hydrolase, p 95.8 0.02 7E-07 46.0 6.5 71 497-573 3-73 (85)
43 2kan_A Uncharacterized protein 95.7 0.051 1.7E-06 45.9 9.1 72 495-572 13-84 (94)
44 1wx8_A Riken cDNA 4931431F19; 95.7 0.037 1.3E-06 46.1 8.2 71 495-572 15-85 (96)
45 1vg5_A RSGI RUH-014, rhomboid 95.6 0.023 7.7E-07 47.2 6.2 43 4-47 28-70 (73)
46 1we6_A Splicing factor, putati 95.6 0.062 2.1E-06 46.4 9.3 72 496-573 26-101 (111)
47 1uh6_A Ubiquitin-like 5; beta- 95.5 0.05 1.7E-06 47.5 8.6 73 495-573 26-98 (100)
48 1wx7_A Ubiquilin 3; ubiquitin- 95.5 0.047 1.6E-06 46.7 8.4 72 495-573 15-86 (106)
49 1sif_A Ubiquitin; hydrophobic 95.5 0.036 1.2E-06 45.9 7.3 70 497-572 9-78 (88)
50 1wia_A Hypothetical ubiquitin- 95.5 0.053 1.8E-06 45.2 8.5 70 495-572 5-74 (95)
51 1veg_A NEDD8 ultimate buster-1 95.5 0.024 8.3E-07 48.2 6.3 44 3-47 27-70 (83)
52 2klc_A Ubiquilin-1; ubiquitin- 95.4 0.053 1.8E-06 46.3 8.3 70 496-572 24-93 (101)
53 3vdz_A Ubiquitin-40S ribosomal 95.4 0.049 1.7E-06 47.3 8.1 71 496-572 34-104 (111)
54 4eew_A Large proline-rich prot 95.4 0.057 1.9E-06 44.1 8.0 70 496-572 16-85 (88)
55 2ojr_A Ubiquitin; lanthide-bin 95.4 0.065 2.2E-06 46.3 8.7 72 496-573 34-105 (111)
56 1oai_A Nuclear RNA export fact 95.3 0.024 8.2E-07 45.2 5.4 39 5-43 7-45 (59)
57 1we7_A SF3A1 protein; structur 95.3 0.054 1.8E-06 47.1 8.1 72 496-573 24-105 (115)
58 2l2d_A OTU domain-containing p 95.2 0.032 1.1E-06 45.6 5.8 38 4-41 16-53 (73)
59 2kk8_A Uncharacterized protein 95.2 0.049 1.7E-06 45.1 7.1 71 496-572 9-80 (84)
60 3m62_B UV excision repair prot 95.2 0.05 1.7E-06 46.8 7.3 69 498-572 2-70 (106)
61 3b08_A Polyubiquitin-C, ubiqui 95.2 0.064 2.2E-06 47.3 8.2 70 497-572 76-145 (152)
62 4fbj_B NEDD8; effector-HOST ta 95.1 0.062 2.1E-06 44.4 7.3 68 499-572 2-69 (88)
63 2dai_A Ubadc1, ubiquitin assoc 95.0 0.066 2.3E-06 45.3 7.5 42 4-46 28-69 (83)
64 1yqb_A Ubiquilin 3; structural 95.0 0.071 2.4E-06 45.5 7.8 71 495-572 20-90 (100)
65 2kd0_A LRR repeats and ubiquit 94.9 0.1 3.5E-06 43.1 8.1 69 497-572 12-80 (85)
66 2dkl_A Trinucleotide repeat co 94.8 0.081 2.8E-06 45.0 7.6 45 5-50 21-65 (85)
67 1wxv_A BAG-family molecular ch 94.8 0.18 6.3E-06 41.6 9.5 72 496-573 6-82 (92)
68 2jp7_A MRNA export factor MEX6 94.8 0.033 1.1E-06 44.2 4.6 40 5-44 6-45 (57)
69 1vek_A UBP14, ubiquitin-specif 94.7 0.1 3.6E-06 44.1 7.9 43 3-46 27-70 (84)
70 1v86_A DNA segment, CHR 7, way 94.7 0.1 3.5E-06 44.0 7.8 70 495-572 15-84 (95)
71 2kdi_A Ubiquitin, vacuolar pro 94.6 0.092 3.1E-06 45.9 7.7 72 496-573 8-79 (114)
72 1wji_A Tudor domain containing 94.6 0.054 1.9E-06 43.5 5.7 42 4-46 8-49 (63)
73 2dak_A Ubiquitin carboxyl-term 94.6 0.052 1.8E-06 43.3 5.5 43 3-46 7-49 (63)
74 1wiv_A UBP14, ubiquitin-specif 94.6 0.083 2.8E-06 43.6 6.8 44 3-47 27-70 (73)
75 3b08_A Polyubiquitin-C, ubiqui 94.5 0.096 3.3E-06 46.2 7.7 69 499-573 2-70 (152)
76 3u30_A Ubiquitin, linear DI-ub 94.5 0.096 3.3E-06 48.1 7.9 72 495-572 18-89 (172)
77 2kjr_A CG11242; UBL, ubiquitin 94.4 0.12 4.1E-06 44.1 7.6 78 495-573 13-93 (95)
78 1ify_A HHR23A, UV excision rep 94.2 0.035 1.2E-06 42.4 3.5 39 4-43 7-45 (49)
79 4a20_A Ubiquitin-like protein 94.2 0.18 6.3E-06 43.3 8.5 72 495-572 17-92 (98)
80 1wgd_A Homocysteine-responsive 94.2 0.21 7.1E-06 41.5 8.5 71 496-572 6-82 (93)
81 1q0v_A Hydrophilic protein; ha 94.1 0.051 1.8E-06 46.1 4.7 55 206-260 11-77 (81)
82 3plu_A Ubiquitin-like modifier 94.1 0.17 5.8E-06 43.8 8.0 72 495-572 19-90 (93)
83 1v5o_A 1700011N24RIK protein; 94.0 0.21 7.3E-06 42.4 8.4 73 496-573 6-82 (102)
84 2l7r_A Ubiquitin-like protein 93.8 0.16 5.3E-06 42.6 7.0 69 496-572 18-86 (93)
85 2crn_A Ubash3A protein; compac 93.8 0.1 3.6E-06 42.0 5.7 43 3-46 7-50 (64)
86 1v2y_A 3300001G02RIK protein; 93.7 0.15 5E-06 44.8 6.9 72 496-572 6-92 (105)
87 1dv0_A DNA repair protein HHR2 93.6 0.028 9.5E-07 42.7 2.0 41 5-46 4-44 (47)
88 3rt3_B Ubiquitin-like protein 93.6 0.19 6.6E-06 45.2 7.9 70 498-572 3-73 (159)
89 3b1l_X E3 ubiquitin-protein li 92.7 0.013 4.3E-07 46.5 0.0 68 499-572 2-69 (76)
90 1x1m_A Ubiquitin-like protein 93.4 0.22 7.4E-06 42.8 7.5 71 496-572 11-96 (107)
91 1wgg_A Ubiquitin carboxyl-term 93.4 0.16 5.4E-06 43.1 6.5 70 495-572 5-75 (96)
92 3rt3_B Ubiquitin-like protein 93.3 0.3 1E-05 43.9 8.6 72 496-573 80-151 (159)
93 2dah_A Ubiquilin-3; UBA domain 93.3 0.13 4.6E-06 40.1 5.4 42 6-48 10-52 (54)
94 2cpw_A CBL-interacting protein 93.0 0.13 4.3E-06 41.4 5.1 42 4-46 18-60 (64)
95 2lxa_A Ubiquitin-like protein 93.0 0.22 7.5E-06 41.9 6.8 70 498-572 2-74 (87)
96 1wz0_A Ubiquitin-like protein 93.0 0.51 1.8E-05 41.1 9.3 72 495-572 22-93 (104)
97 2d07_B Ubiquitin-like protein 92.9 0.37 1.3E-05 40.8 8.0 72 495-572 15-86 (93)
98 2dag_A Ubiquitin carboxyl-term 92.8 0.57 2E-05 38.6 8.8 43 3-46 7-50 (74)
99 3a4r_A Nfatc2-interacting prot 92.6 0.6 2.1E-05 38.2 8.7 72 495-572 5-77 (79)
100 3m63_B Ubiquitin domain-contai 92.6 0.12 3.9E-06 44.3 4.6 69 497-572 28-96 (101)
101 1v5t_A 8430435I17RIK protein; 92.5 0.42 1.4E-05 39.7 7.8 72 496-572 6-79 (90)
102 2gow_A HCG-1 protein, ubiquiti 92.5 0.81 2.8E-05 41.1 10.2 66 495-565 15-88 (125)
103 3q3f_A Ribonuclease/ubiquitin 92.5 0.28 9.5E-06 47.1 7.6 69 498-572 106-174 (189)
104 2io0_B Small ubiquitin-related 92.4 0.55 1.9E-05 39.8 8.5 71 496-572 4-74 (91)
105 2cp9_A EF-TS, EF-TSMT, elongat 92.3 0.16 5.3E-06 41.4 4.7 37 5-41 9-45 (64)
106 1wm3_A Ubiquitin-like protein 92.3 0.51 1.7E-05 37.8 7.8 69 498-572 2-70 (72)
107 1tr8_A Conserved protein (MTH1 92.3 0.16 5.4E-06 44.6 5.1 36 5-40 65-100 (102)
108 2eke_C Ubiquitin-like protein 92.3 0.52 1.8E-05 41.4 8.3 71 495-572 29-99 (106)
109 2kdb_A Homocysteine-responsive 92.2 0.42 1.5E-05 41.1 7.6 72 495-572 21-98 (99)
110 2io1_B Small ubiquitin-related 92.1 0.4 1.4E-05 40.8 7.2 72 495-572 5-76 (94)
111 2k8h_A Small ubiquitin protein 92.1 0.53 1.8E-05 41.5 8.2 72 495-572 24-95 (110)
112 3u30_A Ubiquitin, linear DI-ub 92.0 0.36 1.2E-05 44.2 7.5 70 497-572 96-165 (172)
113 2kj6_A Tubulin folding cofacto 92.0 0.82 2.8E-05 39.2 9.2 79 495-574 12-94 (97)
114 2jy5_A Ubiquilin-1; UBA, alter 91.9 0.26 9E-06 37.9 5.4 37 6-43 13-50 (52)
115 2knz_A Ubiquilin-4; cytoplasm, 91.8 0.29 1E-05 37.8 5.6 39 7-45 13-51 (53)
116 1whc_A RSGI RUH-027, UBA/UBX 3 91.8 0.22 7.5E-06 40.0 4.9 43 3-46 7-50 (64)
117 1wgn_A UBAP1, ubiquitin associ 91.6 0.29 1E-05 39.7 5.4 42 6-48 20-61 (63)
118 3l0w_B Monoubiquitinated proli 91.4 0.58 2E-05 43.6 8.2 69 499-573 2-70 (169)
119 2kc2_A Talin-1, F1; FERM, adhe 91.3 0.61 2.1E-05 42.4 8.0 74 499-573 13-120 (128)
120 1wf9_A NPL4 family protein; be 91.3 0.26 8.8E-06 42.5 5.3 74 498-573 8-92 (107)
121 2dzj_A Synaptic glycoprotein S 91.0 0.72 2.5E-05 38.6 7.7 74 498-575 11-88 (88)
122 2ekk_A UBA domain from E3 ubiq 90.7 0.38 1.3E-05 36.0 5.1 40 3-44 7-46 (47)
123 3ai5_A Yeast enhanced green fl 90.4 0.76 2.6E-05 47.2 8.6 72 495-572 231-302 (307)
124 1oqy_A HHR23A, UV excision rep 90.2 0.54 1.9E-05 49.3 7.5 69 496-570 6-77 (368)
125 1se9_A Ubiquitin family; ubiqu 90.1 1.7 5.7E-05 39.4 9.7 66 495-565 14-87 (126)
126 1v6e_A Cytoskeleton-associated 89.8 0.93 3.2E-05 37.9 7.3 77 497-574 7-86 (95)
127 2daf_A FLJ35834 protein; hypot 89.6 1.2 4.1E-05 40.2 8.2 73 496-574 14-87 (118)
128 2bwb_A Ubiquitin-like protein 89.5 0.65 2.2E-05 35.0 5.5 37 6-43 8-45 (46)
129 3u5e_m 60S ribosomal protein L 89.3 0.07 2.4E-06 47.3 0.0 68 499-572 2-69 (128)
130 1wgh_A Ubiquitin-like 3, HCG-1 89.0 2.4 8.3E-05 37.6 9.7 65 496-565 15-87 (116)
131 2lbc_A Ubiquitin carboxyl-term 88.9 0.7 2.4E-05 41.1 6.2 42 4-46 77-118 (126)
132 1vej_A Riken cDNA 4931431F19; 88.4 0.96 3.3E-05 37.6 6.2 41 6-47 30-71 (74)
133 1wr1_B Ubiquitin-like protein 87.7 1 3.5E-05 35.7 5.7 37 7-44 19-56 (58)
134 4b6w_A Tubulin-specific chaper 86.5 1.8 6.3E-05 36.1 7.0 73 497-573 2-81 (86)
135 1t0y_A Tubulin folding cofacto 86.3 2.7 9.4E-05 36.9 8.4 78 496-574 5-85 (122)
136 3kyd_D Small ubiquitin-related 85.6 2.4 8.2E-05 37.8 7.7 72 495-572 38-109 (115)
137 2daj_A KIAA0977 protein, COBL- 85.6 2.1 7.1E-05 36.9 6.9 66 496-564 9-75 (91)
138 3u5c_f 40S ribosomal protein S 85.4 0.16 5.5E-06 47.0 0.0 68 499-572 2-69 (152)
139 2dzm_A FAS-associated factor 1 82.4 4.6 0.00016 34.8 7.9 70 497-572 9-78 (100)
140 3pge_A SUMO-modified prolifera 82.2 3.7 0.00012 39.9 7.9 71 495-572 27-97 (200)
141 2fnj_B Transcription elongatio 81.6 2.2 7.5E-05 38.2 5.7 67 501-572 4-77 (118)
142 3jyu_A Ubiquitin carboxyl-term 81.1 3.9 0.00013 39.8 7.8 63 510-573 154-218 (231)
143 2cwb_A Chimera of immunoglobul 80.5 2.6 9E-05 37.3 5.7 40 6-45 67-106 (108)
144 4a3p_A Ubiquitin carboxyl-term 80.4 3.9 0.00013 39.4 7.5 70 503-573 134-206 (217)
145 2dna_A Unnamed protein product 80.2 3.5 0.00012 33.7 6.0 41 7-47 21-61 (67)
146 3tix_A Ubiquitin-like protein 79.6 4.1 0.00014 39.9 7.2 71 495-572 55-125 (207)
147 3shq_A UBLCP1; phosphatase, hy 79.4 3.2 0.00011 42.5 6.9 72 496-572 4-76 (320)
148 2al3_A TUG long isoform; TUG U 79.1 5.3 0.00018 34.4 7.0 70 498-573 10-79 (90)
149 4dbg_A Ranbp-type and C3HC4-ty 78.7 5.5 0.00019 34.9 7.2 73 495-572 20-96 (105)
150 2ooa_A E3 ubiquitin-protein li 76.2 4.2 0.00014 31.9 5.0 36 4-40 10-45 (52)
151 4ajy_B Transcription elongatio 75.1 4.5 0.00015 36.3 5.7 59 502-565 5-64 (118)
152 2jxx_A Nfatc2-interacting prot 75.0 15 0.00051 31.6 8.8 71 495-571 23-94 (97)
153 2cp8_A NEXT to BRCA1 gene 1 pr 74.0 5.2 0.00018 31.5 5.1 40 7-46 11-50 (54)
154 1wgl_A TOLL-interacting protei 72.0 7.4 0.00025 30.8 5.7 47 3-49 7-54 (59)
155 2d9s_A CBL E3 ubiquitin protei 70.6 7.7 0.00026 30.5 5.3 37 4-41 8-44 (53)
156 4ae4_A Ubiquitin-associated pr 69.3 6.6 0.00023 35.0 5.4 37 7-44 78-114 (118)
157 1otr_A Protein CUE2; protein-p 55.1 22 0.00076 27.3 5.3 40 7-46 6-46 (49)
158 1aip_C EF-TS, elongation facto 55.0 14 0.00047 35.9 5.1 37 6-42 4-40 (196)
159 1xb2_B EF-TS, elongation facto 51.6 15 0.00052 37.4 5.1 39 4-42 3-41 (291)
160 3ivf_A Talin-1; FERM domain, c 48.2 67 0.0023 32.6 9.3 70 496-565 84-158 (371)
161 4ae4_A Ubiquitin-associated pr 48.1 22 0.00075 31.6 4.9 41 4-45 7-47 (118)
162 2juj_A E3 ubiquitin-protein li 42.7 22 0.00075 28.2 3.5 39 4-43 6-44 (56)
163 1oqy_A HHR23A, UV excision rep 42.4 12 0.00042 39.1 2.8 40 4-44 167-206 (368)
164 2dhy_A CUE domain-containing p 42.1 50 0.0017 26.8 5.8 45 4-48 17-62 (67)
165 1q0v_A Hydrophilic protein; ha 42.0 6.8 0.00023 33.3 0.6 20 232-251 6-25 (81)
166 2xzm_9 RPS31E; ribosome, trans 38.4 6.6 0.00023 37.8 0.0 56 499-559 2-57 (189)
167 3k6g_A Telomeric repeat-bindin 38.0 56 0.0019 29.0 5.8 43 6-49 14-56 (111)
168 1vdl_A Ubiquitin carboxyl-term 34.1 55 0.0019 27.5 4.8 36 6-41 25-61 (80)
169 3qij_A Protein 4.1; cytoskelet 30.5 66 0.0023 31.8 5.8 46 496-541 16-62 (296)
170 2qho_B E3 ubiquitin-protein li 30.5 88 0.003 24.4 5.1 40 7-46 11-51 (53)
171 2l76_A Nfatc2-interacting prot 30.0 1.6E+02 0.0056 25.4 7.4 65 495-565 19-83 (95)
172 3a1q_C Ubiquitin interaction m 29.2 10 0.00034 28.6 -0.3 40 205-250 5-44 (45)
173 2oo9_A E3 ubiquitin-protein li 29.1 85 0.0029 24.0 4.7 36 5-41 4-39 (46)
174 3ivf_A Talin-1; FERM domain, c 28.9 1.7E+02 0.006 29.5 8.7 72 497-571 3-80 (371)
175 3v7o_A Minor nucleoprotein VP3 27.6 13 0.00044 36.9 0.0 71 487-565 13-83 (227)
176 2rr9_C Putative uncharacterize 25.8 9.3 0.00032 28.9 -1.0 39 206-250 3-41 (46)
177 2lbc_A Ubiquitin carboxyl-term 23.9 75 0.0026 27.8 4.3 42 4-46 2-44 (126)
178 3oja_B Anopheles plasmodium-re 23.2 5.8E+02 0.02 26.8 11.8 12 480-491 575-586 (597)
179 2lva_A Ubiquitin carboxyl-term 27.3 19 0.00066 32.8 0.0 35 7-41 20-55 (129)
180 3au4_A Myosin-X; protein-prote 21.5 1.5E+02 0.0051 31.8 6.9 48 496-543 215-264 (555)
181 1h4r_A Merlin; FERM, neurofibr 20.7 1.3E+02 0.0043 29.7 5.7 66 496-563 21-87 (314)
No 1
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=99.85 E-value=1.9e-21 Score=171.31 Aligned_cols=90 Identities=36% Similarity=0.569 Sum_probs=81.7
Q ss_pred HccCCCCCCCCCCCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcC
Q 008174 483 EASLPQEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELG 562 (575)
Q Consensus 483 ~asLP~EP~~~~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElG 562 (575)
...||+||..+..+.|+|+||||||+|++|||+.+++|++||+||++. ++.+..|.|+++||||+|.. |.++||+|+|
T Consensus 9 ~~~lp~EP~~~~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~-d~~~TL~e~g 86 (109)
T 2cr5_A 9 VPDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEV-EGGSSLEDIG 86 (109)
T ss_dssp CCCCCCCCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCC-CSSCBHHHHT
T ss_pred cccCCCCCCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCC-CCCCCHHHcC
Confidence 467999999888899999999999999999999999999999999964 56788999999999999964 6799999999
Q ss_pred CCCCceeEEEeeC
Q 008174 563 LTSKQEALFLELV 575 (575)
Q Consensus 563 L~PsqaaL~VE~I 575 (575)
|+|+ ++|+|+.+
T Consensus 87 L~p~-a~L~Ve~~ 98 (109)
T 2cr5_A 87 ITVD-TVLNVEEK 98 (109)
T ss_dssp CSSC-EEEEEEEC
T ss_pred CCCC-eEEEEEeC
Confidence 9985 99999863
No 2
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=99.80 E-value=1.3e-19 Score=159.93 Aligned_cols=85 Identities=22% Similarity=0.371 Sum_probs=76.3
Q ss_pred CCCCCCCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCcee
Q 008174 490 PAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEA 569 (575)
Q Consensus 490 P~~~~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~Psqaa 569 (575)
|..+..+.|+|+||||||+|++|||+.++||++||+||+++.+.....|.|+++||||+|+.+|.++||+|+||+|+ ++
T Consensus 6 p~~~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~ps-a~ 84 (109)
T 2dzk_A 6 SGRDRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPS-AS 84 (109)
T ss_dssp CCCCCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSE-EE
T ss_pred CCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCc-eE
Confidence 44455678999999999999999999999999999999987666678999999999999998778999999999995 99
Q ss_pred EEEeeC
Q 008174 570 LFLELV 575 (575)
Q Consensus 570 L~VE~I 575 (575)
|+|+.+
T Consensus 85 L~v~~~ 90 (109)
T 2dzk_A 85 VVLLPA 90 (109)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 999864
No 3
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=99.80 E-value=2e-19 Score=150.84 Aligned_cols=79 Identities=39% Similarity=0.622 Sum_probs=72.4
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 494 DENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 494 ~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
.+++|+|+||||||+|++|||+.+++|++||+||++ .+..+..|.|+++||||.|+..|.++||+|+||.| +++|+||
T Consensus 4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p-~a~L~ve 81 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFP-QETLFLE 81 (84)
T ss_dssp CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCS-EEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCC-CCEEEEE
Confidence 357899999999999999999999999999999996 55678899999999999998667899999999998 5999998
Q ss_pred e
Q 008174 574 L 574 (575)
Q Consensus 574 ~ 574 (575)
.
T Consensus 82 ~ 82 (84)
T 3qx1_A 82 A 82 (84)
T ss_dssp E
T ss_pred e
Confidence 5
No 4
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=99.77 E-value=7.8e-19 Score=158.46 Aligned_cols=83 Identities=28% Similarity=0.467 Sum_probs=74.9
Q ss_pred CCCCCCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeE
Q 008174 491 APDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEAL 570 (575)
Q Consensus 491 ~~~~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL 570 (575)
..+..+.|+|+||||||+|++|||+.++||++||+||++. +..+..|.|+++||||+|...|.++||+|+||+| +++|
T Consensus 37 ~d~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~p-sa~L 114 (124)
T 1wj4_A 37 IDVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCP-QETV 114 (124)
T ss_dssp CCCSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCS-SBCC
T ss_pred cCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCC-ceEE
Confidence 3445688999999999999999999999999999999976 6677899999999999998767899999999999 4999
Q ss_pred EEeeC
Q 008174 571 FLELV 575 (575)
Q Consensus 571 ~VE~I 575 (575)
+|+++
T Consensus 115 iv~~~ 119 (124)
T 1wj4_A 115 FVQES 119 (124)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99864
No 5
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=99.64 E-value=4e-16 Score=141.11 Aligned_cols=76 Identities=24% Similarity=0.451 Sum_probs=66.9
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCC-CCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRG-IKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~-~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
.+.|+|+||||||+|+++||+.++||++||+||+++.. .....|.|+++||||.|.+ .++||+|+||.| ++|++.
T Consensus 50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d--~~~TL~eagL~p--savl~k 125 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELAD--ENQTLKEANLLN--AVIVQR 125 (127)
T ss_dssp SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCS--TTCBHHHHTCSS--CEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCC--CCCcHHHCCCcC--ceEEEE
Confidence 56899999999999999999999999999999998643 4567999999999999984 589999999998 466665
Q ss_pred e
Q 008174 574 L 574 (575)
Q Consensus 574 ~ 574 (575)
+
T Consensus 126 ~ 126 (127)
T 1s3s_G 126 L 126 (127)
T ss_dssp E
T ss_pred e
Confidence 4
No 6
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=99.15 E-value=3e-11 Score=90.63 Aligned_cols=44 Identities=32% Similarity=0.471 Sum_probs=40.6
Q ss_pred CCCCcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 008174 1 MVRPNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEG 45 (575)
Q Consensus 1 ma~p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~ 45 (575)
|+. ++++|.+||+|||+++.+|.+||+.|+|||+.||+.||..+
T Consensus 2 M~~-~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 2 AEE-RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp TTH-HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred ccc-HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 454 67899999999999999999999999999999999999764
No 7
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.8e-10 Score=92.59 Aligned_cols=45 Identities=33% Similarity=0.464 Sum_probs=41.3
Q ss_pred CcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcCCCc
Q 008174 4 PNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEGDRN 48 (575)
Q Consensus 4 p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~~~~ 48 (575)
..+++|.+||+|||+++.+|++||+.|+|||+.||+.||...+.+
T Consensus 14 ~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~~~~ 58 (62)
T 2dal_A 14 ALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGGGSG 58 (62)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSCCCC
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCCCCC
Confidence 456889999999999999999999999999999999999887644
No 8
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=1.7e-10 Score=94.13 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=39.7
Q ss_pred CcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 008174 4 PNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEGD 46 (575)
Q Consensus 4 p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~~ 46 (575)
+.++.|.+||+|||+++.+|.+||+.++|||+.||+.||...+
T Consensus 16 ~~q~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~~ 58 (66)
T 2dzl_A 16 RHQVMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQETN 58 (66)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred ccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 4458999999999999999999999999999999999997654
No 9
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=6.8e-10 Score=90.71 Aligned_cols=43 Identities=26% Similarity=0.412 Sum_probs=40.2
Q ss_pred cHHHHHHHHhhhC-CCHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 008174 5 NQEAIDTFISITG-ATESVAVQKLEEHSGDLNAAVNAHFSEGDR 47 (575)
Q Consensus 5 ~~e~I~~F~siTg-as~~~A~q~Le~~~~dL~~Avn~~f~~~~~ 47 (575)
++++|++||+||| +++.+|++||+.|+|||+.||+.||...+.
T Consensus 18 ~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~~ 61 (67)
T 2dam_A 18 QTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEG 61 (67)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 4678999999999 999999999999999999999999998763
No 10
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=98.93 E-value=3.8e-10 Score=86.03 Aligned_cols=39 Identities=28% Similarity=0.372 Sum_probs=35.4
Q ss_pred cHHHHHHHHhhhCCCH-HHHHHHHHHhcCCHHHHHHHHHh
Q 008174 5 NQEAIDTFISITGATE-SVAVQKLEEHSGDLNAAVNAHFS 43 (575)
Q Consensus 5 ~~e~I~~F~siTgas~-~~A~q~Le~~~~dL~~Avn~~f~ 43 (575)
+++.|.+|++|||++. .+|++||+.|+|||+.||+.||-
T Consensus 5 ~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~~ 44 (45)
T 3e21_A 5 REMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVIP 44 (45)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC--
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHcC
Confidence 5789999999999996 99999999999999999999983
No 11
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.50 E-value=1e-07 Score=79.49 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=63.7
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
+|+||+++|+.+...|..++||.+|..+|....+..+..++|...||.|.+...+.++||.++||.+ .++|+|.
T Consensus 2 ~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~-g~~l~v~ 75 (86)
T 2kzr_A 2 RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQS-GDMLIVE 75 (86)
T ss_dssp CEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCT-TCEEECC
T ss_pred EEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCC-CCEEEEE
Confidence 5899999998776559999999999999987777778899999999999886434579999999997 5888885
No 12
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=98.46 E-value=7.4e-08 Score=97.31 Aligned_cols=47 Identities=28% Similarity=0.381 Sum_probs=41.9
Q ss_pred CCCCcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 008174 1 MVRPNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEGDR 47 (575)
Q Consensus 1 ma~p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~~~ 47 (575)
|.+.+.+.|.+||+|||+++.+|.+||+.|+|||+.||++||...+.
T Consensus 11 l~~~~~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~~~~ 57 (270)
T 3bq3_A 11 DASPEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKEIG 57 (270)
T ss_dssp --CHHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHHHCC
T ss_pred hccchHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCccc
Confidence 34567889999999999999999999999999999999999988664
No 13
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.09 E-value=0.0016 Score=56.01 Aligned_cols=81 Identities=16% Similarity=0.333 Sum_probs=61.2
Q ss_pred CCCCCCCCCCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCC
Q 008174 487 PQEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSK 566 (575)
Q Consensus 487 P~EP~~~~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~Ps 566 (575)
++||.........|.||..+|+.+.-.+..++||.+|...|....+..+...+|+ |--+.|.+ ++||.++|+..
T Consensus 13 ~~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi--~~Gk~L~D---~~tL~~ygI~~- 86 (106)
T 1ttn_A 13 IPEPPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWF--FSGRPLTD---KMKFEELKIPK- 86 (106)
T ss_dssp --------CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEE--ETTEECCT---TSHHHHCCCSS-
T ss_pred CCCCCCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEE--ECCEECCC---CCcHHHcCCCC-
Confidence 3566666667799999999999999999999999999999987777778888887 44566643 68999999986
Q ss_pred ceeEEEe
Q 008174 567 QEALFLE 573 (575)
Q Consensus 567 qaaL~VE 573 (575)
..+|+|-
T Consensus 87 g~ti~lv 93 (106)
T 1ttn_A 87 DYVVQVI 93 (106)
T ss_dssp SCEEEEE
T ss_pred CCEEEEE
Confidence 5777663
No 14
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.04 E-value=0.00054 Score=57.08 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=58.7
Q ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCC-cccCCCCcccchhhcCCCCCceeEEEeeC
Q 008174 498 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPR-RAFSDGESALTLNELGLTSKQEALFLELV 575 (575)
Q Consensus 498 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPR-R~ft~eD~skTLeElGL~PsqaaL~VE~I 575 (575)
..|+||-|+|...+. ...++|+.+|++.|....+.....|.|...||. ..+... .+.||+++||.. ...|||+.+
T Consensus 5 m~lRvrs~~G~~Ri~-v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~-~~~~l~~lgl~h-Gd~l~l~~~ 80 (80)
T 2pjh_A 5 IIIRVQSPDGVKRIT-ATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITAS-SSKSLHLLKIKH-GDLLFLFPS 80 (80)
T ss_dssp CCCEEECSSEEEECC-CCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSC-CCCTTTTTCCCT-TCCEEC---
T ss_pred EEEEEECCCCCEEEE-cCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCC-CCCCHHHcCCCC-CCEEEEecC
Confidence 568999999975554 888999999999998666666778889888887 555432 588999999986 689998753
No 15
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.95 E-value=0.0011 Score=58.69 Aligned_cols=40 Identities=30% Similarity=0.521 Sum_probs=37.5
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 008174 6 QEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEG 45 (575)
Q Consensus 6 ~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~ 45 (575)
.+.|...|.+||.|+..|+..|.+++|||+.||+.+|...
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4679999999999999999999999999999999999765
No 16
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=96.91 E-value=0.0013 Score=47.35 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=33.8
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 008174 6 QEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHF 42 (575)
Q Consensus 6 ~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f 42 (575)
.+.|+++|++ |-+...|++.|..++||++.|++.+|
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 5789999999 99999999999999999999999765
No 17
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.74 E-value=0.0085 Score=47.81 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=59.4
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
....+|.||..+|+.+.-.+..++||.+|...|....+..+...+|+ |.-+.+.+ +.||.++|+.+ +.+|+|
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~--~~gk~L~d---~~tL~~~~i~~-g~~i~l 76 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLL--FKGKALAD---GKRLSDYSIGP-NSKLNL 76 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEE--ETTEECCT---TSBGGGGTCCS-SBCCEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE--ECCeECCC---CCcHHHcCCCC-CCEEEE
Confidence 35689999999999888999999999999999987777778888887 44666643 68999999986 466665
No 18
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=96.71 E-value=0.00079 Score=69.08 Aligned_cols=40 Identities=23% Similarity=0.403 Sum_probs=37.1
Q ss_pred cHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhc
Q 008174 5 NQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSE 44 (575)
Q Consensus 5 ~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~ 44 (575)
..++..+|.+|||+.+++|.-||.+++|||+.|||.||..
T Consensus 45 ~~~~~~~f~~~~~~~~~~~~~~l~~~~w~~~~~~~~~~~~ 84 (362)
T 4gew_A 45 DEQKLHEFAIITATDEAFAQSILQDVDWDLKKALDVFYGS 84 (362)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHTTSSSSCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHhCCcHHHHHHHHhhcCchHHHHHHHHcCC
Confidence 3567899999999999999999999999999999999954
No 19
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=96.68 E-value=0.0066 Score=47.53 Aligned_cols=69 Identities=17% Similarity=0.288 Sum_probs=57.0
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
+|.||.++|+.+.-.+..++|+.+|...|....+..+...+|+ |--+.+.+ +.||.++|+.+ +.+|+|-
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~--~~g~~L~d---~~tL~~~~i~~-g~~i~l~ 70 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI--YSGKQMND---EKTAADYKILG-GSVLHLV 70 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCT---TSBGGGGTCCT-TCEEEEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE--ECCEECCC---CCcHHHcCCCC-CCEEEEE
Confidence 6889999999999999999999999999987667778888887 44566643 68999999997 5777653
No 20
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.66 E-value=0.0061 Score=53.26 Aligned_cols=73 Identities=15% Similarity=0.139 Sum_probs=63.0
Q ss_pred CCCceEEEEECCC----CCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCcee
Q 008174 494 DENAVTLLVRMPD----GSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEA 569 (575)
Q Consensus 494 ~~~~vrIqIRLPD----GsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~Psqaa 569 (575)
..+.++|.||+++ |+.+.-.+..++|+.+|-.-|....+..+...+|+ |=-|.|.+ +.||.+.||.+ ++.
T Consensus 12 ~tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI--~~GKiL~D---~~TL~~y~I~~-gst 85 (100)
T 1wju_A 12 TTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIV--INKKQLQL---GKTLEEQGVAH-NVK 85 (100)
T ss_dssp CCCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE--ETTEECCT---TSBHHHHTCCS-SEE
T ss_pred hcceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE--eCCeECCC---CCcHHHcCCCC-CCE
Confidence 3578999999999 77899999999999999999998888888899998 56888864 69999999997 576
Q ss_pred EEE
Q 008174 570 LFL 572 (575)
Q Consensus 570 L~V 572 (575)
|+|
T Consensus 86 i~v 88 (100)
T 1wju_A 86 AMV 88 (100)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
No 21
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=96.61 E-value=0.0073 Score=48.52 Aligned_cols=71 Identities=20% Similarity=0.331 Sum_probs=59.7
Q ss_pred ceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 497 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 497 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
..+|.||.++|+.+.-.+..++||.+|..-|....+..+...+|+ |.-+.+.+ ++||.++|+.+ ..+|+|-
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~--~~g~~L~d---~~tL~~~~i~~-~~~l~l~ 73 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-WSTLFLL 73 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE--ETTEECCT---TSBTGGGTCCT-TCEEEEE
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE--ECCEECCC---CCCHHHcCCCC-CCEEEEE
Confidence 468999999999999999999999999999987777778888888 56677763 68999999987 5777663
No 22
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=96.54 E-value=0.008 Score=47.05 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=56.7
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
+|.||.++|+.+.-.+..++|+.+|...|....+..+...+|+. .-+.+.+ +.||.++|+.+ +.+|+|-
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~--~g~~L~d---~~tL~~~~i~~-g~~i~l~ 70 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLED---GRTLSDYNIQR-ESTLHLV 70 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE--TTEECCT---TCBTGGGTCCT-TCEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE--CCeECCC---CCcHHHcCCCC-CCEEEEE
Confidence 58899999999999999999999999999876677778888874 4566643 68999999997 5777653
No 23
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=96.45 E-value=0.014 Score=48.37 Aligned_cols=72 Identities=18% Similarity=0.301 Sum_probs=59.4
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
.....|.||..+|+.+.-.+..++||.+|...|....+..+...+|+. --+.+.+ +.||.++|+.+ +.+|+|
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~--~Gk~L~D---~~tL~~~gi~~-g~~i~l 86 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLED---GRTLSDYNIQK-ESTLHL 86 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE--TTEECCT---TCBTGGGTCCT-TCEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE--CCeECCC---cCcHHHCCCCC-CCEEEE
Confidence 467899999999999999999999999999999877677777888873 3455553 68999999997 577766
No 24
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.44 E-value=0.014 Score=47.44 Aligned_cols=72 Identities=19% Similarity=0.346 Sum_probs=60.1
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
...+|.||..+|+.+.-.+..++||.+|...|....+..+...+|+ |--+.+.+ +.||.++|+.+ ..+|+|-
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~--~~Gk~L~d---~~tL~~~~i~~-g~~i~l~ 77 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLE--FQGQVLQD---WLGLGIYGIQD-SDTLILS 77 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEE--ETTEECCS---SSBHHHHTCCT-TEEEEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEE--ECCEEccC---CCCHHHCCCCC-CCEEEEE
Confidence 4689999999999999999999999999999988777888888887 44566653 68999999986 5777663
No 25
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=96.36 E-value=0.011 Score=46.64 Aligned_cols=69 Identities=13% Similarity=0.277 Sum_probs=57.3
Q ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 498 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 498 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
.+|.||. +|+.+.-.+..++||.+|...|....+..+...+|+ |.-+.+.+ +.||.++|+.+ +.+|+|-
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~--~~gk~L~d---~~tL~~~~i~~-g~~i~l~ 73 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLI--YSGKILKD---DQTVESYHIQD-GHSVHLV 73 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCT---TSBTGGGTCCT-TCEEEEE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEE--ECCeEcCC---CCCHHHcCCCC-CCEEEEE
Confidence 6788888 999999999999999999999987767778888887 55666653 58999999997 5777764
No 26
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=96.33 E-value=0.014 Score=49.08 Aligned_cols=69 Identities=19% Similarity=0.328 Sum_probs=57.4
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
+|.||.++|+.+.-.+..++||.+|...|....+..+...+|+ |--+.|.+ +.||.++|+.+ +..|+|-
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~--~~Gk~L~D---~~tL~~~gi~~-g~~i~l~ 70 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-ESTLHLV 70 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEE--ETTEECCT---TSBTGGGTCCT-TCEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE--ECCEECCC---CCCHHHcCCCC-CCEEEEE
Confidence 6889999999999999999999999999987777888888887 44566653 68999999997 4777653
No 27
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=96.32 E-value=0.015 Score=48.04 Aligned_cols=71 Identities=20% Similarity=0.379 Sum_probs=59.2
Q ss_pred ceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 497 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 497 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
..+|.||..+|+.+.-.+..++||.+|...|....+..+...+|+ |--+.+.+ ++||.++|+.+ +.+|+|-
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~--~~Gk~L~D---~~tL~~~~I~~-g~~i~l~ 74 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT--FEGKPLED---QLPLGEYGLKP-LSTVFMN 74 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEE--SSSSCCCT---TSBHHHHHCST-TCEEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE--ECCEECCC---CCcHHHcCCCC-CCEEEEE
Confidence 578999999999999999999999999999988778888888888 44566643 68999999986 5777653
No 28
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=96.31 E-value=0.017 Score=46.83 Aligned_cols=73 Identities=15% Similarity=0.250 Sum_probs=59.5
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 494 DENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 494 ~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
......|.||..+|+.+.-.+..++||.+|..-|....+..+...+|+. --+.|.+ +.||.++|+.+ +.+|+|
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~--~G~~L~d---~~tL~~~~i~~-~~~i~l 81 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY--SGKQMND---EKTAADYKILG-GSVLHL 81 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE--TTEECCT---TSBGGGGTCCT-TCEEEE
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE--CCeECCC---CCcHHHcCCCC-CCEEEE
Confidence 3467899999999999999999999999999999876677777778773 3355543 78999999997 577766
No 29
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.26 E-value=0.018 Score=48.69 Aligned_cols=79 Identities=11% Similarity=0.125 Sum_probs=63.6
Q ss_pred CCceEEEEECC---CCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcC---CCCcccCCCCcccchhhcCCCCCce
Q 008174 495 ENAVTLLVRMP---DGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRP---YPRRAFSDGESALTLNELGLTSKQE 568 (575)
Q Consensus 495 ~~~vrIqIRLP---DGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~---FPRR~ft~eD~skTLeElGL~Psqa 568 (575)
.+.++|.|+.| +|..+.++|..+.||..|..-|...-+..+...+|.-. +|......++...||...|+.+ ..
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~-G~ 85 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVEN-GD 85 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCT-TC
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCC-CC
Confidence 46789999875 68889999999999999999998777777888888743 6655554445689999999997 57
Q ss_pred eEEEee
Q 008174 569 ALFLEL 574 (575)
Q Consensus 569 aL~VE~ 574 (575)
.|+|..
T Consensus 86 ~I~V~d 91 (97)
T 1wjn_A 86 CLLVRW 91 (97)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 888764
No 30
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=96.11 E-value=0.028 Score=45.33 Aligned_cols=72 Identities=14% Similarity=0.250 Sum_probs=58.7
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc---CCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVG---RGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~---~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...+|.||..+|+.+.-.+..++||.+|...|... .+..+...+|+ |--+.+.+ +.||.++|+.+ +.+|+|
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi--~~Gk~L~D---~~tL~~~~i~~-g~~i~l 77 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI--YAGKILSD---DVPIRDYRIDE-KNFVVV 77 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEE--ETTEECCT---TSBGGGGCCCT-TSEEEE
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEE--ECCEECcC---CCCHHHcCCCC-CCEEEE
Confidence 45889999999999999999999999999999864 56777888887 44566653 68999999986 577766
Q ss_pred e
Q 008174 573 E 573 (575)
Q Consensus 573 E 573 (575)
-
T Consensus 78 ~ 78 (85)
T 2wyq_A 78 M 78 (85)
T ss_dssp E
T ss_pred E
Confidence 3
No 31
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=96.06 E-value=0.027 Score=45.05 Aligned_cols=70 Identities=20% Similarity=0.380 Sum_probs=58.2
Q ss_pred ceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 497 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 497 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...|.||.++|+.+.-.+..++||.+|...|....+..+...+|+ |--+.+.+ +.||.++|+.+ +.+|+|
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~--~~G~~L~d---~~tL~~~~i~~-~~~l~l 73 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT--FEGKPLED---QLPLGEYGLKP-LSTVFM 73 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE--ETTEECCT---TSBGGGGTCCT-TCEEEE
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEE--ECCEECCC---CCcHHHCCCCC-CCEEEE
Confidence 478999999999998899999999999999987777778888887 34466653 68999999997 577765
No 32
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.017 Score=48.82 Aligned_cols=72 Identities=18% Similarity=0.333 Sum_probs=58.9
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
....+|.||..+|+.+.-.+..++||.+|...|....+..+...+|+ |--+.|.+ ++||.++||.+ ..+|+|
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi--~~Gk~L~D---~~tL~~~~i~~-g~~i~l 91 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-ESTLHL 91 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE--ETTEECCT---TCBSGGGTCCT-TEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE--ECCEECCC---CCcHHHCCCCC-CCEEEE
Confidence 35689999999999999999999999999999987767778888888 45566653 68999999987 577665
No 33
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=96.00 E-value=0.02 Score=47.46 Aligned_cols=70 Identities=19% Similarity=0.331 Sum_probs=57.8
Q ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 498 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 498 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
..|.||..+|+.+.-.+..++||.+|...|....+..+...+|+ |--+.|.+ +.||.++|+.+ +.+|+|-
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~--~~G~~L~d---~~tL~~~~i~~-~~~i~l~ 71 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-ESTLHLV 71 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCT---TSBTGGGTCCT-TCEEEEE
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEE--ECCEECCC---CCcHHHcCCCC-CCEEEEE
Confidence 46889999999999999999999999999987767778888888 55566653 68999999986 5777663
No 34
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.00 E-value=0.0096 Score=43.87 Aligned_cols=40 Identities=33% Similarity=0.394 Sum_probs=37.4
Q ss_pred CCcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHh
Q 008174 3 RPNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFS 43 (575)
Q Consensus 3 ~p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~ 43 (575)
+|+.++|++.|++ |-++..|++.|..++||++.|++-.|.
T Consensus 2 ~p~e~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 2 TPKSLAVEELSGM-GFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp CHHHHHHHHHHTT-TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 6888999999998 999999999999999999999998875
No 35
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=95.94 E-value=0.03 Score=46.01 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=57.6
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...+|.||..+|+.+.-.+..++||.+|...|....+..+...+|+ |=-+.|.+ +.||.++|+ . ..+|+|
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi--~~Gk~L~d---~~tL~~~~i-~-g~~i~l 73 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI--YQGRVLQD---DKKLQEYNV-G-GKVIHL 73 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE--ETTEECCT---TSBGGGGTC-T-TEEEEE
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE--ECCeECCC---CCCHHHcCC-C-CcEEEE
Confidence 5689999999999998899999999999999987667777788887 44566653 789999999 5 466665
No 36
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.93 E-value=0.034 Score=46.66 Aligned_cols=69 Identities=10% Similarity=0.191 Sum_probs=56.5
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc---CCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVG---RGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~---~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
+|.||..+|+.+.-.+..++||.+|...|... .+..+...+|+ |--+.+.+ +.||.++|+.+ +.+|+|-
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi--~~Gk~L~D---~~tL~~ygI~~-g~~i~l~ 73 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLI--YAGKILND---DTALKEYKIDE-KNFVVVM 73 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEE--ETTEECCT---TSBGGGGTCCS-SSEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEE--ECCEECCC---cCcHHHCCCCC-CCEEEEE
Confidence 58899999999999999999999999999865 56778888887 45566653 68999999987 5777653
No 37
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=95.84 E-value=0.021 Score=48.27 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=60.0
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...++|.||..+|+.+.-....++||.+|...|....+..+...+|+ |--+.|.+ +.||.++|+.. ..+|.|
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLi--f~Gk~L~d---~~tl~dy~i~~-g~~I~l 90 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL--FEGQRIAD---NHTPKELGMEE-EDVIEV 90 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE--ETTEECCT---TCCHHHHTCCT-TCEEEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEE--ECCeEcCC---CCCHHHCCCCC-CCEEEE
Confidence 35689999999999999999999999999999987777878888887 45666663 68999999986 466665
No 38
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.81 E-value=0.049 Score=44.48 Aligned_cols=72 Identities=14% Similarity=0.167 Sum_probs=58.2
Q ss_pred CCceEEEEECCCC-CEEEE-EeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 495 ENAVTLLVRMPDG-SRRGR-RFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 495 ~~~vrIqIRLPDG-sRi~R-RF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
.....|.||..+| +.+.- .+..++||.+|...|....+..+...+|+- --+.+.+ +.||.++|+.+ ..+|+|
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~--~gk~L~d---~~tL~~~~i~~-g~~i~l 78 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFY--RGKQLEN---GYTLFDYDVGL-NDIIQL 78 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE--TTEECCS---SSBHHHHTCCT-TCEEEE
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE--CCeECCC---CCCHHHCCCCC-CCEEEE
Confidence 3568999999999 67877 599999999999999877778788888874 3566643 68999999986 466665
No 39
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.79 E-value=0.048 Score=48.65 Aligned_cols=72 Identities=14% Similarity=0.207 Sum_probs=58.7
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
...++|.||.. |+.+.-.+..++||.+|...|....+..+...+|+ |--+.|.+ ++||.++||.+ +.+|+|-
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D---~~tL~dygI~~-gstI~lv 101 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLI--FAGKILKD---QDTLIQHGIHD-GLTVHLV 101 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEE--ETTEEEST---TSCGGGTTCSS-SEEEEEE
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEE--ECCEEcCC---CCCHHHcCCCC-CCEEEEE
Confidence 35688999988 99999999999999999999987667778888887 44566653 68999999986 5777663
No 40
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=95.78 E-value=0.026 Score=45.15 Aligned_cols=70 Identities=19% Similarity=0.269 Sum_probs=58.4
Q ss_pred ceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 497 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 497 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
..+|.||..+|+.+.-....++||.+|...|....+..+...+|+ |--+.|.+ +.||.++|+.. ..+|.|
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~--~~G~~L~d---~~tl~~~~i~~-~~~i~l 72 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL--FEGQRIAD---NHTPKELGMEE-EDVIEV 72 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE--ETTEECCT---TCCHHHHTCCT-TEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEE--ECCEEeCC---CCCHHHcCCCC-CCEEEE
Confidence 468999999999999999999999999999987777778888886 45677764 68999999997 577665
No 41
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=95.76 E-value=0.029 Score=44.64 Aligned_cols=70 Identities=21% Similarity=0.279 Sum_probs=56.5
Q ss_pred ceEEEEECCCCCEE-EEE-eCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 497 AVTLLVRMPDGSRR-GRR-FLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 497 ~vrIqIRLPDGsRi-~RR-F~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...|.||..+|+.+ .-. +..++|+.+|..-|....+..+...+|+ |--+.+.+ +.||.++|+.+ +.+|+|
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~--~~g~~L~d---~~tL~~~~i~~-g~~i~l 73 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLF--YRGKQMED---GHTLFDYEVRL-NDTIQL 73 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCT---TCBTTTTTCCT-TCEEEE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEE--ECCEECCC---CCCHHHcCCCC-CCEEEE
Confidence 46789999999875 677 9999999999999987777778888887 34566643 68999999986 577765
No 42
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=95.76 E-value=0.02 Score=45.98 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=57.7
Q ss_pred ceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 497 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 497 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
..+|.||.++|+.+.-.+..++||.+|...|....+..+...+|+. --+.+.+ +.||.++|+.+ ..+|+|-
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~--~g~~L~d---~~tL~~~~i~~-~~~i~l~ 73 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLED---GRTLSDYNIHN-HSALYLL 73 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE--TBEECCT---TCBTTTTTCCT-TCEEEEE
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE--CCeECCC---CCCHHHCCCCC-CCEEEEE
Confidence 3678999999999999999999999999999877777788888884 3455543 68999999997 5777663
No 43
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=95.73 E-value=0.051 Score=45.90 Aligned_cols=72 Identities=19% Similarity=0.285 Sum_probs=59.3
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...+.|.||.++| .+.-.+..++||.+|...|....+..+...+|+ |.-+.|.+ ..+||.++|+.+ ..+|+|
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D--~~~tL~~ygI~~-gstl~l 84 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLY--YSGIELAD--DYRNLNEYGITE-FSEIVV 84 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEE--ETTEEECC--TTSBHHHHTCCT-TEEEEE
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE--ECCEECCC--CcccHHHCCCCC-CCEEEE
Confidence 3568999999988 788899999999999999998778888888887 56677753 238999999987 577665
No 44
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.73 E-value=0.037 Score=46.14 Aligned_cols=71 Identities=11% Similarity=0.179 Sum_probs=57.7
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...++|.||.. |+.+.-.+..++||.+|...|....+..+...+|+ |--+.|.+ ++||.++|+.+ +.+|+|
T Consensus 15 ~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~--~~Gk~L~D---~~tL~~~gi~~-g~~i~l 85 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLI--FTGKILRD---QDILSQRGILD-GSTVHV 85 (96)
T ss_dssp SCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCE--ETTEECCT---TSCHHHHTCCT-TEEEEC
T ss_pred CCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE--ECCEECCC---cCCHHHCCCCC-CCEEEE
Confidence 45689999998 99999999999999999999987777777777776 44566643 68999999987 577765
No 45
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.58 E-value=0.023 Score=47.24 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=39.1
Q ss_pred CcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 008174 4 PNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEGDR 47 (575)
Q Consensus 4 p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~~~ 47 (575)
+..+.|++.|.+ |-++..|++.|.+++||++.||+..|+..+.
T Consensus 28 ~~ee~I~~L~eM-GF~r~~a~~AL~~~~~nve~Ave~Ll~~~~p 70 (73)
T 1vg5_A 28 ASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILMSQSGP 70 (73)
T ss_dssp CCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHHTCSCS
T ss_pred ccHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 457899999998 8999999999999999999999999987664
No 46
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=95.56 E-value=0.062 Score=46.37 Aligned_cols=72 Identities=24% Similarity=0.230 Sum_probs=59.0
Q ss_pred CceEEEEECC---CCCEEEEEeCC-CCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEE
Q 008174 496 NAVTLLVRMP---DGSRRGRRFLK-SNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALF 571 (575)
Q Consensus 496 ~~vrIqIRLP---DGsRi~RRF~~-SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~ 571 (575)
..++|.||++ +|+.+...+.. ++||.+|..-|....+..+...+|+. --+.+.+ +.||.++|+.+ ..+|+
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~--~Gk~L~D---~~tL~~y~I~~-g~~l~ 99 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG--KAGFLKD---NMSLAHYNVGA-GEILT 99 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC--SSSBCCT---TSBTTTTTCSS-SCEEE
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE--CCEECCC---CCcHHHCCCCC-CCEEE
Confidence 4589999999 89989999998 99999999999987788888888874 3455543 68999999997 57776
Q ss_pred Ee
Q 008174 572 LE 573 (575)
Q Consensus 572 VE 573 (575)
|-
T Consensus 100 l~ 101 (111)
T 1we6_A 100 LS 101 (111)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 47
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.55 E-value=0.05 Score=47.48 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=62.4
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
...+.|-|+...|+.+.-.+..++||.+|..-|....+..+..-+|+ |.-+.|.+ +.||.+.||.. ..+|.|.
T Consensus 26 ~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi--~~Gk~L~D---~~TL~dygI~~-gstlhL~ 98 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLK--KWYTIFKD---HVSLGDYEIHD-GMNLELY 98 (100)
T ss_dssp CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEE--ETTEECCS---SCBHHHHTCCT-TEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEE--ECCEECCC---CCCHHHcCCCC-CCEEEEE
Confidence 45689999999999999999999999999999998778888888887 55888854 69999999997 5777764
No 48
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.54 E-value=0.047 Score=46.66 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=57.9
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
...++|.||..+|+ +.-.+..++||.+|...|....+..+...+|+ |--+.|.+ ++||.++||.. ..+|+|-
T Consensus 15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi--~~Gk~L~D---~~tL~~~gi~~-g~~i~l~ 86 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI--FAGKILKD---PDSLAQCGVRD-GLTVHLV 86 (106)
T ss_dssp SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEE--ETTEECCT---TSCHHHHTCCT-TEEEEEE
T ss_pred CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEE--ECCEECCC---cCcHHHcCCCC-CCEEEEE
Confidence 45689999999885 78899999999999999987667777888887 44566643 68999999986 5777663
No 49
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=95.53 E-value=0.036 Score=45.90 Aligned_cols=70 Identities=20% Similarity=0.363 Sum_probs=57.8
Q ss_pred ceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 497 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 497 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...|.||..+|+.+.-.+..++||.+|..-|....+..+...+|+ |--+.+.+ +.||.++|+.+ +.+|+|
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~--~~Gk~L~D---~~tL~~~gi~~-g~~i~l 78 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-ESTLHL 78 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE--ETTEECCT---TSBSGGGTCCT-TCEEEE
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEE--ECCEECCC---CCcHHHcCCCC-CCEEEE
Confidence 467899999999999999999999999999987777778888887 44666653 68999999987 466665
No 50
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.53 E-value=0.053 Score=45.19 Aligned_cols=70 Identities=16% Similarity=0.244 Sum_probs=56.1
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...++|.||..+|+.+...+..++||.+|...|.... +...+|+ |--+.|.+ .+.||.++|+.. ..+|+|
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi--~~Gk~L~D--~~~tL~~y~i~~-g~~i~l 74 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLI--YQGRLLQD--PARTLSSLNITN-NCVIHC 74 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEE--ETTEECCC--SSCBTTTTTCCT-TEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEE--ECCEEccC--CcCCHHHcCCCC-CCEEEE
Confidence 3568999999999999999999999999999996432 7778887 55666653 248999999987 577766
No 51
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.51 E-value=0.024 Score=48.22 Aligned_cols=44 Identities=25% Similarity=0.405 Sum_probs=40.5
Q ss_pred CCcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 008174 3 RPNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEGDR 47 (575)
Q Consensus 3 ~p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~~~ 47 (575)
.|..+.|++.|.+ |-+...|++.|.+++||++.|++..|+..+.
T Consensus 27 ~~~ee~I~~Lv~M-GF~~~~A~~AL~~t~gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 27 SPSQESINQLVYM-GFDTVVAEAALRVFGGNVQLAAQTLAHHGGS 70 (83)
T ss_dssp CCCHHHHHHHHHH-SCCHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 4568999999999 9999999999999999999999999997763
No 52
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=95.44 E-value=0.053 Score=46.28 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=57.7
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
..++|.||.. |+.+.-.+..++||.+|...|....+..+...+|+ |--+.|.+ ++||.++|+.+ +.+|+|
T Consensus 24 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi--~~Gk~L~D---~~tL~~~gI~~-g~~I~l 93 (101)
T 2klc_A 24 KIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLI--FAGKILKD---QDTLSQHGIHD-GLTVHL 93 (101)
T ss_dssp CCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEE--ETTEEECT---TCCTGGGTCCT-TCEEEE
T ss_pred CeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEE--ECCEECCC---cCcHHHcCCCC-CCEEEE
Confidence 4689999998 88888999999999999999987767778888887 44566653 68999999987 466665
No 53
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=95.39 E-value=0.049 Score=47.25 Aligned_cols=71 Identities=20% Similarity=0.333 Sum_probs=59.2
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
....|.||..+|+.+.-++..++||.+|...|....+..+...+|+ |--+.|.+ ++||.++|+.+ ..+|+|
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D---~~tL~~~gI~~-gs~I~l 104 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-ESTLHL 104 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCT---TSBTTTTTCCT-TCEEEE
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEE--ECCEECCC---CCcHHHCCCCC-CCEEEE
Confidence 3588999999999999999999999999999987777778888888 55566653 68999999986 466665
No 54
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=95.38 E-value=0.057 Score=44.11 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=57.9
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...+|.||..+|+.+.-.+..++|+.+|...|....+..+...+|+ |--+.+.+ +.||.++|+ + +.+|+|
T Consensus 16 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi--~~Gk~L~D---~~tL~~~~i-~-g~~i~l 85 (88)
T 4eew_A 16 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI--YQGRVLQD---DKKLQEYNV-G-GKVIHL 85 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE--ETTEECCT---TSBGGGGTC-T-TEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE--ECCEECCC---CCcHHHcCC-C-CcEEEE
Confidence 5689999999999988899999999999999987767777888887 44466653 789999999 5 567765
No 55
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=95.37 E-value=0.065 Score=46.34 Aligned_cols=72 Identities=19% Similarity=0.281 Sum_probs=59.2
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
...+|.||..+|+.+.-.+..++||.+|..-|....+..+...+|+. --+.|.+ ++||.++|+.+ ..+|+|-
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~--~Gk~L~D---~~tL~~~gI~~-gs~I~l~ 105 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLED---GRTLSDYNIQK-ESTLHLV 105 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE--TTEECCS---SCBTTTTTCCT-TCEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE--CCEECCC---CCcHHHcCCCC-CCEEEEE
Confidence 46899999999999999999999999999999877777788888874 3566643 78999999986 4777663
No 56
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=95.35 E-value=0.024 Score=45.18 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=36.3
Q ss_pred cHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHh
Q 008174 5 NQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFS 43 (575)
Q Consensus 5 ~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~ 43 (575)
.++.|.+|+..||-...=+...|+.++||++.|+..|-.
T Consensus 7 q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 45 (59)
T 1oai_A 7 QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTH 45 (59)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 457799999999999999999999999999999999955
No 57
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=95.31 E-value=0.054 Score=47.11 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=58.7
Q ss_pred CceEEEEECCC----------CCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCC
Q 008174 496 NAVTLLVRMPD----------GSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTS 565 (575)
Q Consensus 496 ~~vrIqIRLPD----------GsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~P 565 (575)
+.++|.|++|+ |+.+.-.+..++||.+|..-|....+..+...+|+. --+.+.+ +.||.++|+.+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~--~Gk~L~D---~~tL~~y~i~~ 98 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY--EGIFIKD---SNSLAYYNMAS 98 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE--TTEEECT---TSBHHHHTCCS
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE--CCEECCC---CCCHHHCCCCC
Confidence 46999999996 678888999999999999999877778788888874 4566643 68999999987
Q ss_pred CceeEEEe
Q 008174 566 KQEALFLE 573 (575)
Q Consensus 566 sqaaL~VE 573 (575)
..+|+|-
T Consensus 99 -g~~i~lv 105 (115)
T 1we7_A 99 -GAVIHLA 105 (115)
T ss_dssp -SCEEEEE
T ss_pred -CCEEEEE
Confidence 4777653
No 58
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=95.23 E-value=0.032 Score=45.64 Aligned_cols=38 Identities=29% Similarity=0.355 Sum_probs=35.5
Q ss_pred CcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHH
Q 008174 4 PNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAH 41 (575)
Q Consensus 4 p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~ 41 (575)
-.+-.+..|+.-||+.+-+|...|+-.+|||..|+++|
T Consensus 16 dmdavls~fvrstgaepgLaRDlleGKnWDl~AAL~D~ 53 (73)
T 2l2d_A 16 DMDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDY 53 (73)
T ss_dssp CHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcchhHHhhccCCccHhHHhhhH
Confidence 34667899999999999999999999999999999999
No 59
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=95.19 E-value=0.049 Score=45.06 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=59.0
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcc-cCCCCcccchhhcCCCCCceeEEE
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRA-FSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~-ft~eD~skTLeElGL~PsqaaL~V 572 (575)
.-.+|.||..+|+.+.-.+..++||.+|..-|....+..+...+|+ |--+. +.+ +.||.++|+.+ ..+|+|
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~lL~D---~~tL~~y~I~~-gs~i~l 80 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLI--VDGIVILRE---DLTVEQCQIVP-TSDIQL 80 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE--ETTEECCCS---SSBHHHHTCCT-TSCEEE
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE--ECCEEecCC---cCCHHHcCCCC-CCEEEE
Confidence 3578999999999999999999999999999987777878888887 44566 543 69999999986 466665
No 60
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.05 Score=46.83 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=56.4
Q ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 498 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 498 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
.+|.||..+|+.+.-.+..++||.+|...|....+..+...+|+ |--+.|.+ +.||.++||.. +.+|+|
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D---~~tL~~~~i~~-g~~i~l 70 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLI--YSGKVLQD---SKTVSECGLKD-GDQVVF 70 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEE--ETTEECCT---TSBTTTTTCCT-TCEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEE--ECCEECCC---cCCHHHcCCCC-CCEEEE
Confidence 46889999999999999999999999999987777777778887 44566653 68999999996 466665
No 61
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=95.16 E-value=0.064 Score=47.30 Aligned_cols=70 Identities=19% Similarity=0.343 Sum_probs=57.8
Q ss_pred ceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 497 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 497 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...|.|+..+|+.+...+..++|+.+|...|....+..+...+|+ |..+.+.+ +.||.++|+.+ +..|+|
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~--~~g~~L~d---~~tL~~~~i~~-~~~i~l 145 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-ESTLHL 145 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCT---TSBTGGGTCCT-TCEEEE
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEE--ECCEECCC---CCCHHHcCCCC-CCEEEE
Confidence 467778888899999999999999999999987767788888988 55677753 68999999986 466665
No 62
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=95.05 E-value=0.062 Score=44.42 Aligned_cols=68 Identities=16% Similarity=0.254 Sum_probs=55.8
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
.|.||..+|+.+.-.+..++||.+|...|....+..+...+|+- =-+.|.+ +.||.++|+.+ ..+|+|
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~--~Gk~L~D---~~tL~~~~i~~-g~~l~l 69 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY--SGKQMND---EKTAADYKILG-GSVLHL 69 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE--TTEECCT---TSBTTTTTCCT-TCEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE--CCeECCC---CCcHHHcCCCC-CCEEEE
Confidence 58899899999999999999999999999876677777888873 3455543 78999999997 467665
No 63
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.04 E-value=0.066 Score=45.32 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=38.9
Q ss_pred CcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 008174 4 PNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEGD 46 (575)
Q Consensus 4 p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~~ 46 (575)
++.+.|++.|++ |-++..|++.|..++||++.|++-.|...+
T Consensus 28 ~~e~~i~~L~~M-GF~~~~a~~AL~~t~~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 28 VDEAALRQLTEM-GFPENRATKALQLNHMSVPQAMEWLIEHAE 69 (83)
T ss_dssp CCHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 678999999997 999999999999999999999999997654
No 64
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=95.01 E-value=0.071 Score=45.47 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=57.6
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...++|.||..+|+ +.-.+..++||.+|...|....+..+...+|+ |--+.|.+ +.||.++|+.. ..+|+|
T Consensus 20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D---~~tL~~ygI~~-gstI~l 90 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI--FAGKILKD---PDSLAQCGVRD-GLTVHL 90 (100)
T ss_dssp TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE--ETTEECCT---TSBHHHHTCCT-TCEEEE
T ss_pred CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEE--ECCEECCC---cCcHHHCCCCC-CCEEEE
Confidence 46789999999996 68899999999999999987667777888887 44566653 68999999986 466665
No 65
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=94.86 E-value=0.1 Score=43.07 Aligned_cols=69 Identities=14% Similarity=0.221 Sum_probs=54.8
Q ss_pred ceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 497 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 497 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
.+.+.+.+ +|+.+.-.+..++||.+|...|....+..+...+|+ |-.+.+.+ ++||.++|+.+ +..|+|
T Consensus 12 ~~~~~~~~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~--~~Gk~L~D---~~tL~~~gi~~-g~~l~l 80 (85)
T 2kd0_A 12 TIKLTVKF-GGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI--FKGKVLVE---TSTLKQSDVGS-GAKLML 80 (85)
T ss_dssp CEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEE--ETTEECCT---TCBTTTTTCCT-TEEEEE
T ss_pred cEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE--ECCeECCC---cCCHHHCCCCC-CCEEEE
Confidence 44555555 898888999999999999999987767778888887 55666643 68999999997 577765
No 66
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.85 E-value=0.081 Score=44.97 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=39.9
Q ss_pred cHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcCCCccc
Q 008174 5 NQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEGDRNTS 50 (575)
Q Consensus 5 ~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~~~~~~ 50 (575)
+.++|+++|.+ |-++..|++.|..++|||+.|++-.|...+....
T Consensus 21 n~~~I~qL~~M-GF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D~D~ 65 (85)
T 2dkl_A 21 MSRLIKQLTDM-GFPREPAEEALKSNNMNLDQAMSALLEKKVDVDK 65 (85)
T ss_dssp HHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHTTSCCSSC
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHHCcCCccc
Confidence 57889999998 9999999999999999999999999987764443
No 67
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.76 E-value=0.18 Score=41.64 Aligned_cols=72 Identities=14% Similarity=0.260 Sum_probs=57.9
Q ss_pred CceEEEEECCCCCEEEEEeCCC-----CcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeE
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKS-----NKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEAL 570 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~S-----DTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL 570 (575)
..++|.|+. .|+.+...|..+ +||.+|..-|....+..+..-+|+ |--+.|.+ .++||.++|+.+ +..|
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~--~~Gk~L~D--~~~~L~~~~i~~-g~~i 79 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLI--FKGKSLKE--METPLSALGIQD-GCRV 79 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEE--ETTEEECC--SSSBHHHHTCCS-SEEE
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEE--ECCeecCC--CcccHHHCCCCC-CCEE
Confidence 568999998 588888899995 999999999987777888888887 45666653 468999999987 4677
Q ss_pred EEe
Q 008174 571 FLE 573 (575)
Q Consensus 571 ~VE 573 (575)
+|-
T Consensus 80 ~l~ 82 (92)
T 1wxv_A 80 MLI 82 (92)
T ss_dssp EEE
T ss_pred EEE
Confidence 663
No 68
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=94.76 E-value=0.033 Score=44.21 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=36.8
Q ss_pred cHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhc
Q 008174 5 NQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSE 44 (575)
Q Consensus 5 ~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~ 44 (575)
.++.|.+|+..||-...=+..+|+.++||++.|+..|-..
T Consensus 6 q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 6 QLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4677999999999999999999999999999999999553
No 69
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=94.70 E-value=0.1 Score=44.09 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=38.7
Q ss_pred CCcHHHHHHHHhhhCCCHHHHHHHHHHhc-CCHHHHHHHHHhcCC
Q 008174 3 RPNQEAIDTFISITGATESVAVQKLEEHS-GDLNAAVNAHFSEGD 46 (575)
Q Consensus 3 ~p~~e~I~~F~siTgas~~~A~q~Le~~~-~dL~~Avn~~f~~~~ 46 (575)
.++.++|++.|++ |-+...|++.|...+ ||++.|++-.|+..+
T Consensus 27 ~~~e~~v~~L~~M-GF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 27 VANEEIVAQLVSM-GFSQLHCQKAAINTSNAGVEEAMNWLLSHMD 70 (84)
T ss_dssp CCCHHHHHHHHHH-TCCHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 4678999999998 999999999999995 899999999998654
No 70
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.65 E-value=0.1 Score=44.00 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=56.5
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...++|.|++ +|+.+.-.+..++||.+|..-|....+..+..-+|+ |.-+.+ . +.||.++||.+ ...|+|
T Consensus 15 ~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~--~~Gk~L-d---d~tL~~~~i~~-g~~i~l 84 (95)
T 1v86_A 15 KELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM--YKGLVP-E---DKTLREIKVTS-GAKIMV 84 (95)
T ss_dssp CCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB--SSSBCC-S---SSBHHHHCCCT-TEEEEE
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE--ECCeeC-C---cCcHHHCCCCC-CCEEEE
Confidence 4568899996 688888999999999999999987777777777777 666766 2 24999999987 466665
No 71
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=94.64 E-value=0.092 Score=45.88 Aligned_cols=72 Identities=17% Similarity=0.299 Sum_probs=59.8
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
+...|.||..+|+.+.-.+..++||.+|..-|....+..+...+|+ |--+.|.+ ++||.++|+.+ +.+|+|-
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi--~~Gk~L~D---~~tL~~ygI~~-gstI~l~ 79 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI--WAGKQLED---GRTLSDYNIQR-ESTLHLV 79 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCT---TCBTTTTTCCS-SCEEEEE
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE--ECCEECCC---CCcHHHCCCCC-CCEEEEE
Confidence 5678999999999999999999999999999987777778888887 34566643 68999999986 5777653
No 72
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.64 E-value=0.054 Score=43.53 Aligned_cols=42 Identities=19% Similarity=0.378 Sum_probs=38.8
Q ss_pred CcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 008174 4 PNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEGD 46 (575)
Q Consensus 4 p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~~ 46 (575)
++.++|++.|++ |-+...|++.|..++||++.|++..|...+
T Consensus 8 ~~~~~I~~L~~M-GF~~~~a~~AL~~~~~nve~A~e~L~~~~~ 49 (63)
T 1wji_A 8 VDEKALKHITEM-GFSKEASRQALMDNGNNLEAALNVLLTSNK 49 (63)
T ss_dssp SCHHHHHHHHTT-TCCHHHHHHHHHHTTSCHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 678899999997 999999999999999999999999998765
No 73
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.62 E-value=0.052 Score=43.27 Aligned_cols=43 Identities=28% Similarity=0.448 Sum_probs=39.2
Q ss_pred CCcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 008174 3 RPNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEGD 46 (575)
Q Consensus 3 ~p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~~ 46 (575)
.|+.+.|++.|++ |-++..|++.|..++||++.|++..|...+
T Consensus 7 ~~~~~~v~~L~~M-GF~~~~a~~AL~~t~~nve~A~e~L~~~~~ 49 (63)
T 2dak_A 7 GPPEDCVTTIVSM-GFSRDQALKALRATNNSLERAVDWIFSHID 49 (63)
T ss_dssp CCCHHHHHHHHHH-TCCHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 5788999999998 999999999999999999999999987544
No 74
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=94.58 E-value=0.083 Score=43.58 Aligned_cols=44 Identities=30% Similarity=0.477 Sum_probs=40.2
Q ss_pred CCcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 008174 3 RPNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEGDR 47 (575)
Q Consensus 3 ~p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~~~ 47 (575)
.++.+.|++.|++ |-++..|++.|..++||++.||+..|+..+.
T Consensus 27 ~~~~~~v~~L~~M-GF~~~~a~~AL~~t~~nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 27 DIDQSSVDTLLSF-GFAEDVARKALKASGGDIEKATDWVFNNSGP 70 (73)
T ss_dssp SSCHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHHSCCS
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 4678999999998 8999999999999999999999999987764
No 75
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=94.54 E-value=0.096 Score=46.17 Aligned_cols=69 Identities=17% Similarity=0.268 Sum_probs=56.4
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
+|.||.++|+.+.-.+..++||.+|..-|....+..+...+|+- .-+.+. .+.||.++|+.+ +..|+|-
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~--~g~~L~---d~~tL~~~~i~~-~~~l~l~ 70 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLE---DGRTLSDYNIQK-ESTLHLV 70 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE--TTEECC---TTSBTGGGTCCT-TCEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEE--CCeECc---CcccHHHhccCC-CCeeEEE
Confidence 57899999999999999999999999999877777777888873 355564 268999999987 4777653
No 76
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=94.53 E-value=0.096 Score=48.11 Aligned_cols=72 Identities=18% Similarity=0.328 Sum_probs=59.1
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
.....|.||..+|+.+.-+...++||.+|...|....+..+...+|+ |--+.+.+ +.||.++||.+ ..+|+|
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~--~~g~~L~d---~~tL~~~~i~~-~~~l~l 89 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-ESTLHL 89 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCT---TCBTGGGTCCT-TCEEEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE--ECCccccc---cCCHhHcCCcc-cceeee
Confidence 45689999999999999999999999999999987777778888887 44566653 78999999987 466665
No 77
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=94.37 E-value=0.12 Score=44.14 Aligned_cols=78 Identities=12% Similarity=0.048 Sum_probs=61.1
Q ss_pred CCceEEEEECCCCC--EEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCccc-CCCCcccchhhcCCCCCceeEE
Q 008174 495 ENAVTLLVRMPDGS--RRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAF-SDGESALTLNELGLTSKQEALF 571 (575)
Q Consensus 495 ~~~vrIqIRLPDGs--Ri~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~f-t~eD~skTLeElGL~PsqaaL~ 571 (575)
.+.++|.|+..+++ .+.++|..++||..|..-|....+..+..-+|+-..+.+.+ ...+.++||.+.|+.+ ...|+
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~-gstih 91 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSD-GLRLH 91 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSS-SCEEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCC-CCEEE
Confidence 46799999988875 79999999999999999998877888888888754433321 1123479999999997 57887
Q ss_pred Ee
Q 008174 572 LE 573 (575)
Q Consensus 572 VE 573 (575)
|.
T Consensus 92 lv 93 (95)
T 2kjr_A 92 VV 93 (95)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 78
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.20 E-value=0.035 Score=42.37 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=35.8
Q ss_pred CcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHh
Q 008174 4 PNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFS 43 (575)
Q Consensus 4 p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~ 43 (575)
+..+.|++.|++ |-++..|++.|.+++||++.|++..|+
T Consensus 7 ~~~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 7 EYETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred cCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 356789999998 899999999999999999999999887
No 79
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=94.20 E-value=0.18 Score=43.33 Aligned_cols=72 Identities=14% Similarity=0.248 Sum_probs=56.1
Q ss_pred CCceEEEEECCCCCEEEE--EeCCCCcHHHHHHHH-HhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCC-CCCceeE
Q 008174 495 ENAVTLLVRMPDGSRRGR--RFLKSNKLQSLFDYI-DVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGL-TSKQEAL 570 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~R--RF~~SDTLqdLydFV-d~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL-~PsqaaL 570 (575)
...++|-||..+|+.+.- .+..++|+.+|...| ....+..+...+|+ |--+.|.+ +.||.++|+ .+ +.+|
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi--~~Gk~L~D---~~tL~dy~I~~~-g~ti 90 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLL--LKGKVLHD---NLFLSDLKVTPA-NSTI 90 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEE--ETTEEECT---TCBGGGSCCBTT-BCEE
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEE--ECCEECcC---cCCHHHcCcCCC-CCEE
Confidence 456899999999987555 567999999999999 66667777888888 45577764 689999999 75 3565
Q ss_pred EE
Q 008174 571 FL 572 (575)
Q Consensus 571 ~V 572 (575)
+|
T Consensus 91 ~l 92 (98)
T 4a20_A 91 TV 92 (98)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 80
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.18 E-value=0.21 Score=41.47 Aligned_cols=71 Identities=21% Similarity=0.216 Sum_probs=56.0
Q ss_pred CceEEEEECCCCC--EEEEEeCCCCcHHHHHHHHHhcC--CCCCcCeEEEcCCCCcccCCCCcccchhhc--CCCCCcee
Q 008174 496 NAVTLLVRMPDGS--RRGRRFLKSNKLQSLFDYIDVGR--GIKAGTYRLVRPYPRRAFSDGESALTLNEL--GLTSKQEA 569 (575)
Q Consensus 496 ~~vrIqIRLPDGs--Ri~RRF~~SDTLqdLydFVd~~~--~~~p~~F~LvT~FPRR~ft~eD~skTLeEl--GL~Psqaa 569 (575)
..++|.||.++|+ .+.-.+..++||.+|..-|.... +..+...+|+ |--+.|.+ +.||.++ ++.+ ..+
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi--~~Gk~L~D---~~tL~~~~~~i~~-~~~ 79 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLI--YSGKLLLD---HQCLRDLLPKQEK-RHV 79 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEE--ETTEECCS---SSCHHHHSCSSSC-SEE
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEE--ECCEECcC---cCCHHHHhcCCCC-CCE
Confidence 4589999999998 44445569999999999998765 6778888888 55677764 5899999 9986 466
Q ss_pred EEE
Q 008174 570 LFL 572 (575)
Q Consensus 570 L~V 572 (575)
|+|
T Consensus 80 i~l 82 (93)
T 1wgd_A 80 LHL 82 (93)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 81
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=94.13 E-value=0.051 Score=46.14 Aligned_cols=55 Identities=42% Similarity=0.462 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhHHHHhhccC--C-CCC---------CCCCCCccchhhhhhhhhhhHHHHHHHHHH
Q 008174 206 EEEMIRAAIEASKQEAENVSG--A-GTE---------HRQPHLEDVDLAHAVSLSLRTAEQEKAQRE 260 (575)
Q Consensus 206 eeemiraaieask~~~~~~~~--~-~~~---------~~~~~~ed~d~a~avslsl~~~~~~~~~~~ 260 (575)
|+|-||-|||.|-+|..+... . .++ ......||+||..||-.||+..|+.|-.+.
T Consensus 11 eDeDLkrAieLSL~Es~~~~~~~~yvp~~~~~~~~~~~~~~edeD~DLKAAIaASLrd~E~qK~~~~ 77 (81)
T 1q0v_A 11 EEELIRKAIELSLKESRNSASSEPIVPVVESKNEVKRQEIEEEEDPDLKAAIQESLREAEEAKLRSE 77 (81)
T ss_dssp HHHHHHHHHHHHHHCCCCCSCCCCCCCCCCCCCCCCCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHhHHHHcCCCCCCCCCCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999765521 1 111 112356788999999999999998876443
No 82
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=94.10 E-value=0.17 Score=43.79 Aligned_cols=72 Identities=14% Similarity=0.231 Sum_probs=61.0
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
+..+.|-|+.+.|+.+.-.+.++|||.+|..-|....+..+..-+|+- --+.|.+ ..||.+.++.. ..+|.+
T Consensus 19 ~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif--~Gk~LkD---~~TL~dY~I~d-gstLhL 90 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK--GGSVLKD---HISLEDYEVHD-QTNLEL 90 (93)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE--TTEECCT---TSBTGGGTCCT-TCEEEE
T ss_pred CceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe--CCEEccC---cCCHHHcCCCC-CCEEEE
Confidence 457999999999999999999999999999999877788888889864 4466664 68999999997 577765
No 83
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.97 E-value=0.21 Score=42.41 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=57.6
Q ss_pred CceEEEEECCCC----CEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEE
Q 008174 496 NAVTLLVRMPDG----SRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALF 571 (575)
Q Consensus 496 ~~vrIqIRLPDG----sRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~ 571 (575)
...+|.||.++| +.+.-.+..++||.+|...|....+..+...+|+. --+.|.+ ..+||.++|+.+ ...|+
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~--~gk~L~D--~~~tL~~ygI~~-g~~l~ 80 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY--MEQLLTD--DHCSLGSYGLKD-GDMVV 80 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEE--TTEEECC--SSSBHHHHTCCT-TEEEE
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEE--CCEECCC--CcccHHHCCCCC-CCEEE
Confidence 457888998765 57778899999999999999987777788888874 3466653 358999999997 57777
Q ss_pred Ee
Q 008174 572 LE 573 (575)
Q Consensus 572 VE 573 (575)
|-
T Consensus 81 l~ 82 (102)
T 1v5o_A 81 LL 82 (102)
T ss_dssp EC
T ss_pred EE
Confidence 64
No 84
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=93.77 E-value=0.16 Score=42.57 Aligned_cols=69 Identities=14% Similarity=0.182 Sum_probs=54.6
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...+|.||. |+.+.-.+..++||.+|...|....+..+...+|+ |--+.+.+ ++||.++|+.+ +.+|.|
T Consensus 18 ~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi--~~Gk~L~D---~~tL~~y~I~~-gstI~l 86 (93)
T 2l7r_A 18 GSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVL--LAGAPLED---EATLGQCGVEA-LTTLEV 86 (93)
T ss_dssp --CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEE--ETTEECCT---TSBHHHHTCCS-SCEEEE
T ss_pred CcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEE--ECCEECCC---CCcHHHCCCCC-CCEEEE
Confidence 346788887 88888899999999999999987777778888887 44566643 68999999986 467665
No 85
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.76 E-value=0.1 Score=41.98 Aligned_cols=43 Identities=9% Similarity=0.179 Sum_probs=38.9
Q ss_pred CCcHHHHHHHHhhhCCCHHHHHHHHHHhcC-CHHHHHHHHHhcCC
Q 008174 3 RPNQEAIDTFISITGATESVAVQKLEEHSG-DLNAAVNAHFSEGD 46 (575)
Q Consensus 3 ~p~~e~I~~F~siTgas~~~A~q~Le~~~~-dL~~Avn~~f~~~~ 46 (575)
+|+.+.|++.|++ |=+...|++.|...++ |++.|+|-.|...+
T Consensus 7 ~~~e~~v~~L~~M-GF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 7 GSSPSLLEPLLAM-GFPVHTALKALAATGRKTAEEALAWLHDHCN 50 (64)
T ss_dssp CCSCSSHHHHHHT-SCCHHHHHHHHHHHTSCCHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 6788899999996 9999999999999976 99999999998765
No 86
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.67 E-value=0.15 Score=44.76 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=57.6
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCC---------------cCeEEEcCCCCcccCCCCcccchhh
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKA---------------GTYRLVRPYPRRAFSDGESALTLNE 560 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p---------------~~F~LvT~FPRR~ft~eD~skTLeE 560 (575)
...+|-|+.-+|+.+.-....++||.+|-.-|....+..+ ..|+|+ |.-+.|.+ .++||.+
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li--~~Gk~L~d--D~~tL~d 81 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT--SAGEKLTE--DRKKLRD 81 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEE--SSSCEECC--SSSBHHH
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEE--eCCcCccC--CcCCHHH
Confidence 4589999999999999999999999999999875433222 468998 78888763 3799999
Q ss_pred cCCCCCceeEEE
Q 008174 561 LGLTSKQEALFL 572 (575)
Q Consensus 561 lGL~PsqaaL~V 572 (575)
.||.+ ...|++
T Consensus 82 ygI~~-g~~l~l 92 (105)
T 1v2y_A 82 YGIRN-RDEVSF 92 (105)
T ss_dssp HTCCS-SEEEEE
T ss_pred cCCCC-CCEEEE
Confidence 99997 466654
No 87
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=93.62 E-value=0.028 Score=42.71 Aligned_cols=41 Identities=27% Similarity=0.294 Sum_probs=37.5
Q ss_pred cHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 008174 5 NQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEGD 46 (575)
Q Consensus 5 ~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~~ 46 (575)
..++|++.+++ |-++..|++.|..++||++.|+|-.|+..+
T Consensus 4 e~eaI~rL~~m-GF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~ 44 (47)
T 1dv0_A 4 EKEAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLSQNF 44 (47)
T ss_dssp CHHHHTTTTTT-TCCHHHHHHHHTTTTSCHHHHHHHTTSCCC
T ss_pred hHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCcC
Confidence 46789999999 999999999999999999999999997654
No 88
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=93.62 E-value=0.19 Score=45.21 Aligned_cols=70 Identities=23% Similarity=0.208 Sum_probs=57.6
Q ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCC-CCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 498 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPY-PRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 498 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~F-PRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
..|.||..+|+.+.-.+..++||.+|-.-|....+..+..-+|+. | ..+.+. .+.||.+.|+.+ +.+|+|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~-~~~g~~L~---d~~tL~~y~i~~-~~~l~l 73 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAV-HPSGVALQ---DRVPLASQGLGP-GSTVLL 73 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEE-ETTCCBCC---TTSCGGGGTCCT-TCEEEE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEE-cCCCCCCC---CCCCHHHcCCCC-CCEEEE
Confidence 468899889999999999999999999999877778787888874 5 456664 378999999997 466665
No 89
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=92.68 E-value=0.013 Score=46.46 Aligned_cols=68 Identities=15% Similarity=0.283 Sum_probs=53.4
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
.|.||.++|+.+.-.+..++|+.+|...|....+..+...+|+ |--+.+.+ +.||.++|+.+ +.+|+|
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~--~~gk~L~d---~~tL~~~~i~~-g~~i~l 69 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVI--FAGKELPN---HLTVQNCDLEQ-QSIVHI 69 (76)
Confidence 4778899999888899999999999999986666667777775 44555543 68999999986 466654
No 90
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.42 E-value=0.22 Score=42.80 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=56.3
Q ss_pred CceEEEEECCCC---CEEEEEeCC---------CCcHHHHHHHHHhcC--CCCCcC-eEEEcCCCCcccCCCCcccchhh
Q 008174 496 NAVTLLVRMPDG---SRRGRRFLK---------SNKLQSLFDYIDVGR--GIKAGT-YRLVRPYPRRAFSDGESALTLNE 560 (575)
Q Consensus 496 ~~vrIqIRLPDG---sRi~RRF~~---------SDTLqdLydFVd~~~--~~~p~~-F~LvT~FPRR~ft~eD~skTLeE 560 (575)
..++|.||..+| +.+.-.|.. ++||.+|...|.... +..+.. .+|+ |--+.|.+ +.||.+
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi--~~Gk~L~D---~~tL~~ 85 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLI--YCGRKLKD---DQTLDF 85 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEE--ETTEECCT---TCBHHH
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEE--ECCeECCC---CCcHHH
Confidence 457899999999 777778766 599999999998776 777778 8887 55666653 689999
Q ss_pred cCCCCCceeEEE
Q 008174 561 LGLTSKQEALFL 572 (575)
Q Consensus 561 lGL~PsqaaL~V 572 (575)
+|+.+ ..+|+|
T Consensus 86 y~i~~-g~~i~l 96 (107)
T 1x1m_A 86 YGIQP-GSTVHV 96 (107)
T ss_dssp HTCCT-TCEEEE
T ss_pred cCCCC-CCEEEE
Confidence 99987 466665
No 91
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.36 E-value=0.16 Score=43.07 Aligned_cols=70 Identities=6% Similarity=0.132 Sum_probs=56.6
Q ss_pred CCceEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 495 ENAVTLLVRMPDGSRR-GRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi-~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...++|.||+ .|+.+ .-.+..++||.+|..-|....+..+..-+|+ |..+.|.+ + ||.++||.+ ...|+|
T Consensus 5 ~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi--~~Gk~L~D---~-tL~~~~I~~-g~~i~l 75 (96)
T 1wgg_A 5 SSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVM--VKGGTLKD---D-DWGNIKMKN-GMTVLM 75 (96)
T ss_dssp CCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCE--ETTEECCS---S-CCCSCCCCS-SCEEEC
T ss_pred CcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE--ECCcCCCC---C-CHHHCCCCC-CCEEEE
Confidence 3568888996 68778 4789999999999999998778888888887 77777753 4 999999997 466654
No 92
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=93.29 E-value=0.3 Score=43.90 Aligned_cols=72 Identities=19% Similarity=0.378 Sum_probs=58.1
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
+...|.||..+|+.+.-.+..++|+.+|..-|....+..+...+|+ |--+.+.+ +.||.+.|+.+ ..+|+|-
T Consensus 80 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~d---~~tL~~y~i~~-g~~l~l~ 151 (159)
T 3rt3_B 80 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT--FEGKPLED---QLPLGEYGLKP-LSTVFMN 151 (159)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE--ETTEECCT---TSBGGGGTCCT-TCEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEE--ECCeecCC---CCCHHHcCCCC-CCEEEEE
Confidence 3456777888999998899999999999999987777888889987 44466653 68999999997 4777653
No 93
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.25 E-value=0.13 Score=40.07 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=35.8
Q ss_pred HHHHHHHHhhhCCCHH-HHHHHHHHhcCCHHHHHHHHHhcCCCc
Q 008174 6 QEAIDTFISITGATES-VAVQKLEEHSGDLNAAVNAHFSEGDRN 48 (575)
Q Consensus 6 ~e~I~~F~siTgas~~-~A~q~Le~~~~dL~~Avn~~f~~~~~~ 48 (575)
.+.|++.+.+ |-+.. .+++.|.+++||++.||+..|+..+.+
T Consensus 10 ~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~~ 52 (54)
T 2dah_A 10 QVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQSSGPS 52 (54)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcC
Confidence 4689999999 77554 569999999999999999999887743
No 94
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.05 E-value=0.13 Score=41.42 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=38.6
Q ss_pred CcHHHHHHHHhhhCCCHHHHHHHHHHhcC-CHHHHHHHHHhcCC
Q 008174 4 PNQEAIDTFISITGATESVAVQKLEEHSG-DLNAAVNAHFSEGD 46 (575)
Q Consensus 4 p~~e~I~~F~siTgas~~~A~q~Le~~~~-dL~~Avn~~f~~~~ 46 (575)
|+.+.|++.|++ |-++..|++.|..++| |++.|++-.|...+
T Consensus 18 ~~e~~i~~L~~M-GF~~~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 18 KHGSALDVLLSM-GFPRARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp SCCCHHHHHHHH-TCCHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred CCHHHHHHHHHc-CCCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 667889999997 9999999999999999 99999999998765
No 95
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=93.03 E-value=0.22 Score=41.93 Aligned_cols=70 Identities=14% Similarity=0.250 Sum_probs=55.9
Q ss_pred eEEEEECCCCCEEEEE--eCCCCcHHHHHHHH-HhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 498 VTLLVRMPDGSRRGRR--FLKSNKLQSLFDYI-DVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 498 vrIqIRLPDGsRi~RR--F~~SDTLqdLydFV-d~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
..|-||..+|+.+.-. +..++|+.+|..-| ....+..+...+|+ |--|.|.+ +.||.++++.+.+++|.|
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi--~~Gk~L~D---~~tL~~y~I~~~~stl~v 74 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLL--LKGKVLHD---NLFLSDLKVTPANSTITV 74 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEE--ETTEECCT---TCBHHHHCCCGGGCEEEE
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEE--ECCEECcC---cCCHHHcCCCCCCCEEEE
Confidence 4688999999877665 56999999999999 76667888889998 56677764 689999999422567765
No 96
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.99 E-value=0.51 Score=41.06 Aligned_cols=72 Identities=15% Similarity=0.235 Sum_probs=56.7
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...++|.|+..+|+.+..+...+++|..|++.+....+..+..++|+ |=-+.|.. +.|..++++.. ..+|.|
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~--FdG~~l~~---~~Tp~dl~med-gD~Idv 93 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR--FDGQPINE---TDTPAQLEMED-EDTIDV 93 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEE--SSSSBCCT---TSCTTTTTCCT-TEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE--ECCEEcCC---CCCHHHcCCCC-CCEEEE
Confidence 45789999999999999999999999999998866667777777776 33444443 68999999986 466654
No 97
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=92.86 E-value=0.37 Score=40.82 Aligned_cols=72 Identities=15% Similarity=0.235 Sum_probs=57.1
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...++|.|+..+|+.+..+...+++|..|++.+....+..+..++|+ |=-+.+.. +.|..++++.. ..+|.|
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~--fdG~~l~~---~~Tp~dl~med-gD~Idv 86 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR--FDGQPINE---TDTPAQLEMED-EDTIDV 86 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEE--ETTEECCT---TCCTTTTTCCT-TEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEE--ECCEEcCC---CCCHHHcCCCC-CCEEEE
Confidence 45789999999999999999999999999998876667777777776 33444543 68999999996 466554
No 98
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.79 E-value=0.57 Score=38.62 Aligned_cols=43 Identities=16% Similarity=0.143 Sum_probs=39.0
Q ss_pred CCcHHHHHHHHhhhCCCHHHHHHHHHHhcC-CHHHHHHHHHhcCC
Q 008174 3 RPNQEAIDTFISITGATESVAVQKLEEHSG-DLNAAVNAHFSEGD 46 (575)
Q Consensus 3 ~p~~e~I~~F~siTgas~~~A~q~Le~~~~-dL~~Avn~~f~~~~ 46 (575)
.++.+.|++.|++ |-++..|++.|..++| |++.|++-.|...+
T Consensus 7 ~~~e~~v~~L~~M-GF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 7 GLDESVIIQLVEM-GFPMDACRKAVYYTGNSGAEAAMNWVMSHMD 50 (74)
T ss_dssp SSCHHHHHHHHHH-SCCHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 4788999999997 9999999999999995 89999999997654
No 99
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=92.61 E-value=0.6 Score=38.24 Aligned_cols=72 Identities=14% Similarity=0.177 Sum_probs=56.6
Q ss_pred CCceEEEEECCCCC-EEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 495 ENAVTLLVRMPDGS-RRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 495 ~~~vrIqIRLPDGs-Ri~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...++|.|+..+|+ .+..+...+++|..|++......+..+..++|+ |=-+.+.. +.|.+++++.. ..+|.|
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~--fdG~~l~~---~~Tp~~l~med-gD~Idv 77 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFF--FDGTKLSG---KELPADLGLES-GDLIEV 77 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEE--ETTEECCS---CCCHHHHTCCT-TCEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE--ECCEEcCC---CCCHHHcCCCC-CCEEEE
Confidence 35689999999996 899999999999999998876667777777776 33444443 68999999986 466654
No 100
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.61 E-value=0.12 Score=44.32 Aligned_cols=69 Identities=13% Similarity=0.291 Sum_probs=55.1
Q ss_pred ceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 497 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 497 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
.++|.||. +|+.+.-.+..++||.+|...|....+..+...+|+ |--+.|.+ +.||.++|+.+ +.+|+|
T Consensus 28 ~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D---~~tL~~~gI~~-g~tI~l 96 (101)
T 3m63_B 28 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLI--YSGKILKD---DQTVESYHIQD-GHSVHL 96 (101)
T ss_dssp -CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEE--ETTEECCT---TSBTTTTTCCT-TEEEEE
T ss_pred EEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEE--ECCEECCC---cCcHHHCCCCC-CCEEEE
Confidence 46788887 898888899999999999999987667777777777 34466653 78999999997 577765
No 101
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=92.53 E-value=0.42 Score=39.71 Aligned_cols=72 Identities=11% Similarity=0.276 Sum_probs=56.3
Q ss_pred CceEEEEECCCCCEEEE-EeCCCCcHHHHHHHHHhcCCCCCcCeEEEcC-CCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 496 NAVTLLVRMPDGSRRGR-RFLKSNKLQSLFDYIDVGRGIKAGTYRLVRP-YPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~R-RF~~SDTLqdLydFVd~~~~~~p~~F~LvT~-FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
..++|.||. +|+.+.- .+..++||.+|..-|....+..+..-+|+-. |--+.+.+ +.||.++||.+ ...|+|
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D---~~~L~~~~i~~-g~~l~l 79 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEN---DVKLGALKLKP-NTKIMM 79 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCT---TSBHHHHTCCT-TEEEEE
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCC---CCCHHHcCCCC-CCEEEE
Confidence 457788887 7887776 7788999999999999887888888899844 43455543 68999999997 466665
No 102
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=92.53 E-value=0.81 Score=41.13 Aligned_cols=66 Identities=17% Similarity=0.232 Sum_probs=52.4
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcC------CC--CCcCeEEEcCCCCcccCCCCcccchhhcCCCC
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGR------GI--KAGTYRLVRPYPRRAFSDGESALTLNELGLTS 565 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~------~~--~p~~F~LvT~FPRR~ft~eD~skTLeElGL~P 565 (575)
...+.|.||+.+|+++.-.|..++||.+|..-|.... +. .+...+|+ |=-|.|.+ +.||.+.++..
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLI--y~GK~LeD---~~TL~~y~I~~ 88 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI--YQGRFLHG---NVTLGALKLPF 88 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEE--SSSSEEES---SCBTGGGCCCT
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEE--ECCcCCCC---CCcHHHcCCCC
Confidence 4569999999999999999999999999999998522 22 24566776 55567764 68999999974
No 103
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=92.53 E-value=0.28 Score=47.07 Aligned_cols=69 Identities=19% Similarity=0.322 Sum_probs=58.4
Q ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 498 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 498 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
..|.||..+|+.+.-.+..++||.+|..-|....+..+...+|+ |--+.|.+ +.||.++|+.+ ..+|+|
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi--~~Gk~L~D---~~tL~dygI~~-gstI~L 174 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-ESTLHL 174 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE--ETTEECCT---TCBGGGGTCCT-TCEEEE
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEE--ECCEECCC---CCCHHHCCCCC-CCEEEE
Confidence 68899999999999999999999999999987767777788887 56677663 68999999987 577766
No 104
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=92.44 E-value=0.55 Score=39.85 Aligned_cols=71 Identities=15% Similarity=0.234 Sum_probs=57.0
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
..++|.|+..+|+.+..+..++++|..|++......+..+..++|+ |--+.+.. +.|.+++++.. ..+|-|
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~--FdG~~l~~---~~Tp~dl~med-gD~Idv 74 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR--FDGQPINE---TDTPAQLEMED-EDTIDV 74 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEE--ETTEECCT---TCCTTTTTCCT-TEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE--ECCEEcCC---CCCHHHcCCCC-CCEEEE
Confidence 4689999999999999999999999999998876777777888877 33444543 68999999986 465544
No 105
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=92.35 E-value=0.16 Score=41.39 Aligned_cols=37 Identities=24% Similarity=0.163 Sum_probs=34.5
Q ss_pred cHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHH
Q 008174 5 NQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAH 41 (575)
Q Consensus 5 ~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~ 41 (575)
+.+.|......||++-..+...|++++|||++||...
T Consensus 9 t~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~L 45 (64)
T 2cp9_A 9 SKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWL 45 (64)
T ss_dssp CCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4688999999999999999999999999999999865
No 106
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=92.30 E-value=0.51 Score=37.81 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=55.0
Q ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 498 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 498 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
++|.|+..+|+.+..+...+++|..|++......+..+..++|+ |--+.+.. +.|.+++++.. ..++-|
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~--fdG~~l~~---~~Tp~~l~med-gD~Idv 70 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR--FDGQPINE---TDTPAQLEMED-EDTIDV 70 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEE--ETTEECCT---TCCTTTTTCCT-TEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEE--ECCEEcCC---CCCHHHcCCCC-CCEEEE
Confidence 67899999999999999999999999998876667777777776 33444543 68999999986 466654
No 107
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=92.28 E-value=0.16 Score=44.64 Aligned_cols=36 Identities=31% Similarity=0.478 Sum_probs=32.6
Q ss_pred cHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHH
Q 008174 5 NQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNA 40 (575)
Q Consensus 5 ~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~ 40 (575)
+.+-|+-.|+=||+|...|.+.|++|+|||-.||-.
T Consensus 65 ~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~ 100 (102)
T 1tr8_A 65 PEDDIELVMNQTGASREDATRALQETGGDLAEAIMR 100 (102)
T ss_dssp CHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 457799999999999999999999999999999853
No 108
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=92.26 E-value=0.52 Score=41.37 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=55.7
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...++|.|+. +|+.+..+...+++|+.|++......+..+..++|+ |=-+.+.. +.|.+++++.. ..+|-|
T Consensus 29 ~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~--FdG~rl~~---~~Tp~dl~med-gD~Idv 99 (106)
T 2eke_C 29 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL--YDGIRIQA---DQTPEDLDMED-NDIIEA 99 (106)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE--ETTEECCT---TCCTTTTTCCT-TEEEEE
T ss_pred CCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEE--ECCeEcCC---CCCHHHcCCCC-CCEEEE
Confidence 4568899999 999999999999999999998876667777788877 33344443 68999999986 465544
No 109
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=92.17 E-value=0.42 Score=41.07 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=53.8
Q ss_pred CCceEEEEECCCCC--EEEEEeCCCCcHHHHHHHHHhc-CCCC-CcCeEEEcCCCCcccCCCCcccchhhc--CCCCCce
Q 008174 495 ENAVTLLVRMPDGS--RRGRRFLKSNKLQSLFDYIDVG-RGIK-AGTYRLVRPYPRRAFSDGESALTLNEL--GLTSKQE 568 (575)
Q Consensus 495 ~~~vrIqIRLPDGs--Ri~RRF~~SDTLqdLydFVd~~-~~~~-p~~F~LvT~FPRR~ft~eD~skTLeEl--GL~Psqa 568 (575)
...+.|.||.++|+ .+.-....++||.+|..-|... .+.. +...+|+ |--|.|.+ +.||.++ ++.+ ..
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLI--y~Gk~L~D---~~tL~~y~~~I~~-~~ 94 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLV--YSGRLLPD---HLQLKDILRKQDE-YH 94 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEE--ETTEEECT---TSBTHHHHTTTCS-EE
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEE--ECCEECCC---CCCHHHHhcCCCC-CC
Confidence 35689999999998 4555669999999999999853 3333 3778887 55677764 6899999 9986 46
Q ss_pred eEEE
Q 008174 569 ALFL 572 (575)
Q Consensus 569 aL~V 572 (575)
+|.|
T Consensus 95 tihL 98 (99)
T 2kdb_A 95 MVHL 98 (99)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6654
No 110
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=92.08 E-value=0.4 Score=40.80 Aligned_cols=72 Identities=15% Similarity=0.235 Sum_probs=57.2
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...++|.|+..+|+.+..+..++++|..|++.+....+..+..++|+ |=-+.+.. +.|++++++.. ..+|.|
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~--FdG~~l~~---~~Tp~dl~med-gD~Idv 76 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR--FDGQPINE---TDTPAQLEMED-EDTIDV 76 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE--ETTEECCT---TCCTTTTTCCT-TCEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEE--ECCEEcCC---CCCHHHcCCCC-CCEEEE
Confidence 35689999999999999999999999999998876677777888876 44455553 68999999986 466554
No 111
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=92.05 E-value=0.53 Score=41.51 Aligned_cols=72 Identities=21% Similarity=0.284 Sum_probs=57.0
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...++|.|+..+|+.+..+...+++|..|++......+..+..++|+ |=-+.+.. +.|..++++.. ..+|-|
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfi--FdG~~L~~---~~Tp~dl~mED-gD~Idv 95 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFL--FDGTPIDE---TKTPEELGMED-DDVIDA 95 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEE--SSSCBCCS---SSHHHHHHCSS-EEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE--ECCEEcCC---CCCHHHcCCCC-CCEEEE
Confidence 45689999999999999999999999999998876667777788877 44444543 68999999986 455544
No 112
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=92.03 E-value=0.36 Score=44.20 Aligned_cols=70 Identities=19% Similarity=0.343 Sum_probs=56.1
Q ss_pred ceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 497 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 497 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...|.||..+|+.+.-++..++||.+|..-|....+..+...+|+ |-.+.+.+ +.||.+.|+.+ ..+|+|
T Consensus 96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~D---~~tL~~y~i~~-g~tl~l 165 (172)
T 3u30_A 96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-ESTLHL 165 (172)
T ss_dssp CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE--ETTEECCT---TSBSGGGTCCT-TCEEEE
T ss_pred cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEE--ECCccCCC---CCcHHHhCCCC-CCEEEE
Confidence 455667777888888899999999999999987767888888887 44566643 78999999997 577776
No 113
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=92.01 E-value=0.82 Score=39.17 Aligned_cols=79 Identities=10% Similarity=0.024 Sum_probs=60.5
Q ss_pred CCceEEEEECCCCC--EEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcC--CCCcccCCCCcccchhhcCCCCCceeE
Q 008174 495 ENAVTLLVRMPDGS--RRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRP--YPRRAFSDGESALTLNELGLTSKQEAL 570 (575)
Q Consensus 495 ~~~vrIqIRLPDGs--Ri~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~--FPRR~ft~eD~skTLeElGL~PsqaaL 570 (575)
.+.++|.|...+.+ .+.++|..++||..|..-|+...+..+..-+|+-. -++......+.++||.+.|+.+ ...|
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~-g~~I 90 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFD-GFRL 90 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCS-CCEE
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCC-CCEE
Confidence 46789999987764 69999999999999999999877888888888742 1333222224579999999997 5777
Q ss_pred EEee
Q 008174 571 FLEL 574 (575)
Q Consensus 571 ~VE~ 574 (575)
+|-.
T Consensus 91 hlvd 94 (97)
T 2kj6_A 91 HIID 94 (97)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7753
No 114
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=91.92 E-value=0.26 Score=37.94 Aligned_cols=37 Identities=24% Similarity=0.459 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhCC-CHHHHHHHHHHhcCCHHHHHHHHHh
Q 008174 6 QEAIDTFISITGA-TESVAVQKLEEHSGDLNAAVNAHFS 43 (575)
Q Consensus 6 ~e~I~~F~siTga-s~~~A~q~Le~~~~dL~~Avn~~f~ 43 (575)
.+.|++.+++ |- +...|++.|.+++||++.||+..|+
T Consensus 13 ~~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 13 QQQLEQLSAM-GFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4689999998 66 9999999999999999999998875
No 115
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=91.83 E-value=0.29 Score=37.76 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=34.3
Q ss_pred HHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 008174 7 EAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEG 45 (575)
Q Consensus 7 e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~ 45 (575)
+.|++.+++-=.+...|++.|.+++||++.||+..|+.+
T Consensus 13 ~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 13 QQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 459999999544999999999999999999999998754
No 116
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=91.76 E-value=0.22 Score=39.97 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=38.4
Q ss_pred CCcHHHHHHHHhhhCCCHHHHHHHHHHh-cCCHHHHHHHHHhcCC
Q 008174 3 RPNQEAIDTFISITGATESVAVQKLEEH-SGDLNAAVNAHFSEGD 46 (575)
Q Consensus 3 ~p~~e~I~~F~siTgas~~~A~q~Le~~-~~dL~~Avn~~f~~~~ 46 (575)
.++.+.|++.|++ |-+...|++.|..+ +||++.|++-.|...+
T Consensus 7 ~~~~~~v~~L~~M-GF~~~~a~~AL~~t~~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 7 GAELTALESLIEM-GFPRGRAEKALALTGNQGIEAAMDWLMEHED 50 (64)
T ss_dssp CCCCCHHHHHHTT-TCCHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHhcCCCHHHHHHHHHhCCC
Confidence 3567899999997 99999999999999 6999999999997654
No 117
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.55 E-value=0.29 Score=39.69 Aligned_cols=42 Identities=7% Similarity=0.352 Sum_probs=37.7
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcCCCc
Q 008174 6 QEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEGDRN 48 (575)
Q Consensus 6 ~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~~~~ 48 (575)
.++|.+.+++ |=+...|.+.|++.++||+.|++-.|+..|.+
T Consensus 20 ~e~V~~LvsM-GFs~~qA~kALKat~~NvErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 20 RQCVETVVNM-GYSYECVLRAMKKKGENIEQILDYLFAHSGPS 61 (63)
T ss_dssp HHHHHHHHHH-HCCHHHHHHHHHHHCSCHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence 4678888876 79999999999999999999999999998864
No 118
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=91.41 E-value=0.58 Score=43.61 Aligned_cols=69 Identities=19% Similarity=0.292 Sum_probs=56.6
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
.|.||..+|+.+.-.+..++|+.+|..-|....+..+...+|+- =-+.|.+ +.||.++|+.+ +.+|+|-
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~--~Gk~L~D---~~tL~~y~I~~-gstI~Lv 70 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF--AGKQLED---GRTLSDYNIQK-ESTLHLV 70 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEE--TTEECCT---TSBGGGGTCCT-TCEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEE--CCccccC---cCcHHHcCCCC-CCEEEEE
Confidence 57899999999999999999999999999877777788888873 3455543 78999999987 5777653
No 119
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=91.31 E-value=0.61 Score=42.45 Aligned_cols=74 Identities=27% Similarity=0.367 Sum_probs=55.6
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCC-CcCeEEEcCCC---------------------------CcccC
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIK-AGTYRLVRPYP---------------------------RRAFS 550 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~-p~~F~LvT~FP---------------------------RR~ft 550 (575)
.|.||||||+....+-..+.++..+...|....+.. ...|.|+...| +..|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 599999999999999999999999999886544433 35689986544 22222
Q ss_pred C------CCcccchhhcCCCCCceeEEEe
Q 008174 551 D------GESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 551 ~------eD~skTLeElGL~PsqaaL~VE 573 (575)
. .|.+.||.|.|+.. ..+|++.
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e-~~tllLR 120 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEE-HETLLLR 120 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCT-TSEEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCC-CCEEEEE
Confidence 1 14589999999997 5888775
No 120
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=91.30 E-value=0.26 Score=42.48 Aligned_cols=74 Identities=22% Similarity=0.235 Sum_probs=53.0
Q ss_pred eEEEEECCCCCEEEEEeC-CCCcHHHHHHHHHhcCCCCCcCeEEE-cCC------CCc--ccC-CCCcccchhhcCCCCC
Q 008174 498 VTLLVRMPDGSRRGRRFL-KSNKLQSLFDYIDVGRGIKAGTYRLV-RPY------PRR--AFS-DGESALTLNELGLTSK 566 (575)
Q Consensus 498 vrIqIRLPDGsRi~RRF~-~SDTLqdLydFVd~~~~~~p~~F~Lv-T~F------PRR--~ft-~eD~skTLeElGL~Ps 566 (575)
..|+||.++|+. .-... .++||.+|..-|....+..+...+|+ ... |.. .+. ..+.++||.++||.+
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~- 85 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH- 85 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT-
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC-
Confidence 679999999975 33567 88999999999987767777777774 222 111 231 023479999999997
Q ss_pred ceeEEEe
Q 008174 567 QEALFLE 573 (575)
Q Consensus 567 qaaL~VE 573 (575)
..+|+|.
T Consensus 86 G~~L~l~ 92 (107)
T 1wf9_A 86 GSMVYLA 92 (107)
T ss_dssp TCEEECC
T ss_pred CCEEEEE
Confidence 5888875
No 121
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.05 E-value=0.72 Score=38.56 Aligned_cols=74 Identities=7% Similarity=0.036 Sum_probs=57.5
Q ss_pred eEEEEECCCCCEEE--E-EeCCCCcHHHHHHHHHh-cCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 498 VTLLVRMPDGSRRG--R-RFLKSNKLQSLFDYIDV-GRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 498 vrIqIRLPDGsRi~--R-RF~~SDTLqdLydFVd~-~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
..|-|+...|+... - .+..++||.+|..-|.. ..++.+..-+|+-.+=.+.|.+ +.||.+.|+.+ .++|+|.
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D---~~tL~~y~i~~-~stl~~K 86 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKD---EDVLQKLPVGT-TATLYFR 86 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCT---TCBTTTSSCCS-EEEEEEC
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCC---CCCHHHcCCCC-CCEEEEE
Confidence 67888888887753 4 78899999999999986 3567777778875554566643 68999999997 6888886
Q ss_pred eC
Q 008174 574 LV 575 (575)
Q Consensus 574 ~I 575 (575)
.+
T Consensus 87 DL 88 (88)
T 2dzj_A 87 DL 88 (88)
T ss_dssp CC
T ss_pred eC
Confidence 53
No 122
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.72 E-value=0.38 Score=35.98 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=35.7
Q ss_pred CCcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhc
Q 008174 3 RPNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSE 44 (575)
Q Consensus 3 ~p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~ 44 (575)
.++.+.|++.|++ |-++..|++.|..++ |++.|++-.|..
T Consensus 7 ~~~~~~v~~L~~M-GF~~~~a~~AL~~~~-n~e~A~~~L~~h 46 (47)
T 2ekk_A 7 GVNQQQLQQLMDM-GFTREHAMEALLNTS-TMEQATEYLLTH 46 (47)
T ss_dssp SSCHHHHHHHHHH-HCCHHHHHHHHHHSC-SHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHcC-CHHHHHHHHHcC
Confidence 4678999999997 999999999999996 999999988753
No 123
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=90.38 E-value=0.76 Score=47.21 Aligned_cols=72 Identities=18% Similarity=0.337 Sum_probs=59.7
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
....+|.||..+|+.+.-.+..++||.+|..-|....+..+..-+|+ |.-+.|.+ ++||.++|+.+ ..+|+|
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi--~~Gk~L~D---~~TLsdygI~~-gstL~L 302 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-ESTLHL 302 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE--ETTEECCT---TSBTGGGTCCT-TCEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE--eCCeecCC---CCCHHHcCCCC-CCEEEE
Confidence 35689999999999999999999999999999987777778888887 44666653 68999999986 466665
No 124
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=90.20 E-value=0.54 Score=49.29 Aligned_cols=69 Identities=16% Similarity=0.284 Sum_probs=56.3
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh---cCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeE
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDV---GRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEAL 570 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~---~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL 570 (575)
...+|.||..+|+.+.-.+..++||.+|...|.. ..++.+...+|+ |--|.|.+ ++||.++||... ..|
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLi--y~GK~L~D---~~tL~dygI~~g-stI 77 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI--YAGKILSD---DVPIRDYRIDEK-NFV 77 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEE--SSSSEECS---SSBTTTTCCCTT-SCE
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEE--ECCeecCC---cCCHHHcCCCCC-CEE
Confidence 4578999999999998899999999999999986 344667788887 66787764 689999999963 544
No 125
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=90.07 E-value=1.7 Score=39.38 Aligned_cols=66 Identities=14% Similarity=0.217 Sum_probs=50.4
Q ss_pred CCceEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHhcC-----CCCC--cCeEEEcCCCCcccCCCCcccchhhcCCCC
Q 008174 495 ENAVTLLVRMPDGSRR-GRRFLKSNKLQSLFDYIDVGR-----GIKA--GTYRLVRPYPRRAFSDGESALTLNELGLTS 565 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi-~RRF~~SDTLqdLydFVd~~~-----~~~p--~~F~LvT~FPRR~ft~eD~skTLeElGL~P 565 (575)
.+.+.|.||+.+|+.+ .-.|.+++||.+|-.-|.... +..+ ..-+|+ |=-|.|.+ +.||.+.++..
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLI--y~GK~LeD---~~TLsdy~I~~ 87 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLI--SAGKVLEN---SKTVKDYRSPV 87 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEE--ETTEECCT---TSBGGGGSCCT
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEE--ECCeECcC---CCcHHHcCCCc
Confidence 3679999999999988 589999999999999995432 2222 355665 45566654 79999999985
No 126
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=89.77 E-value=0.93 Score=37.92 Aligned_cols=77 Identities=12% Similarity=0.092 Sum_probs=57.8
Q ss_pred ceEEEEECCCCC-EEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCC-Cccc-CCCCcccchhhcCCCCCceeEEEe
Q 008174 497 AVTLLVRMPDGS-RRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYP-RRAF-SDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 497 ~vrIqIRLPDGs-Ri~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FP-RR~f-t~eD~skTLeElGL~PsqaaL~VE 573 (575)
.++|.|+..++. .+.++|..++||.+|..-|....+..+..-+|+-.-+ .+.+ ...+.++||.+.|+.+ ...|+|.
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~-g~~l~v~ 85 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDD-GCRIHVI 85 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCT-TCEEEEB
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCC-CCEEEEE
Confidence 488888876553 6899999999999999999988888888888875432 2321 1113479999999997 5788875
Q ss_pred e
Q 008174 574 L 574 (575)
Q Consensus 574 ~ 574 (575)
.
T Consensus 86 d 86 (95)
T 1v6e_A 86 D 86 (95)
T ss_dssp C
T ss_pred E
Confidence 3
No 127
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.61 E-value=1.2 Score=40.18 Aligned_cols=73 Identities=23% Similarity=0.270 Sum_probs=59.6
Q ss_pred CceEEEEE-CCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEee
Q 008174 496 NAVTLLVR-MPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLEL 574 (575)
Q Consensus 496 ~~vrIqIR-LPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE~ 574 (575)
..++|.|. .|+|.++.--|..+.++.+|-+-+....+.....-+|+ |--|.|.+ +.||.++|+.+ +.+++|..
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLI--y~GKiLKD---~eTL~~~gIk~-g~TIhLvi 87 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIR--YSGKILKN---NETLVQHGVKP-QEIVQVEI 87 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEE--ETTEEECS---SCCHHHHSCCS-SCEEEEEE
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEE--ECCeEcCC---cchHHHcCCCC-CCEEEEEE
Confidence 45788888 78899999999999999999999987666666667766 55778875 67999999998 68888763
No 128
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=89.52 E-value=0.65 Score=35.03 Aligned_cols=37 Identities=14% Similarity=0.286 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhC-CCHHHHHHHHHHhcCCHHHHHHHHHh
Q 008174 6 QEAIDTFISITG-ATESVAVQKLEEHSGDLNAAVNAHFS 43 (575)
Q Consensus 6 ~e~I~~F~siTg-as~~~A~q~Le~~~~dL~~Avn~~f~ 43 (575)
.+.|++.+++ | .....+++.|.+.+||++.||+..|+
T Consensus 8 ~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 8 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 4678999998 6 46777899999999999999998875
No 129
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=89.32 E-value=0.07 Score=47.33 Aligned_cols=68 Identities=19% Similarity=0.346 Sum_probs=0.0
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
.|.||..+|+.+.-.+..++||.+|..-|....+..+...+|+ |--+.|.+ +.||.++|+.+ ..+|+|
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D---~~tL~~~~I~~-gsti~l 69 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-ESTLHL 69 (128)
T ss_dssp --------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEE--ECCEECCC---CCchhhhccCC-CCEEEE
Confidence 4678889999988899999999999999987666767777776 55566653 78999999986 466654
No 130
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=88.99 E-value=2.4 Score=37.61 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=51.9
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcC------CC--CCcCeEEEcCCCCcccCCCCcccchhhcCCCC
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGR------GI--KAGTYRLVRPYPRRAFSDGESALTLNELGLTS 565 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~------~~--~p~~F~LvT~FPRR~ft~eD~skTLeElGL~P 565 (575)
..+.|.||+.+|+.+.-.|..++||.+|-.-|.... +. .+...+|+ |=-|.|.+ +.||.+++|..
T Consensus 15 ~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLI--y~GK~LeD---~~TL~~y~I~~ 87 (116)
T 1wgh_A 15 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI--YQGRFLHG---NVTLGALKLPF 87 (116)
T ss_dssp SSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEE--ETTEEECS---SCBTTTTTCCS
T ss_pred CeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEE--ECCcCCCC---CCcHHHcCCCC
Confidence 568999999999999999999999999999998621 22 35667776 45567764 68999999863
No 131
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=88.87 E-value=0.7 Score=41.06 Aligned_cols=42 Identities=26% Similarity=0.426 Sum_probs=38.6
Q ss_pred CcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 008174 4 PNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEGD 46 (575)
Q Consensus 4 p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~~ 46 (575)
|..+.|++.|++ |-+...|++.|..++||++.|++-.|+..+
T Consensus 77 ~~e~~v~~L~~M-GF~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 77 PPEEIVAIITSM-GFQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CCHHHHHHHHHH-TSCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred cCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 778899999997 999999999999999999999999987554
No 132
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=88.41 E-value=0.96 Score=37.62 Aligned_cols=41 Identities=20% Similarity=0.400 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhCC-CHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 008174 6 QEAIDTFISITGA-TESVAVQKLEEHSGDLNAAVNAHFSEGDR 47 (575)
Q Consensus 6 ~e~I~~F~siTga-s~~~A~q~Le~~~~dL~~Avn~~f~~~~~ 47 (575)
.+.|++.+.+ |- ....+++.|.+.+||++.||+..|...+.
T Consensus 30 e~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~ 71 (74)
T 1vej_A 30 QQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLGASGP 71 (74)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 4689999999 64 68888999999999999999999986654
No 133
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=87.71 E-value=1 Score=35.69 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=32.5
Q ss_pred HHHHHHHhhhC-CCHHHHHHHHHHhcCCHHHHHHHHHhc
Q 008174 7 EAIDTFISITG-ATESVAVQKLEEHSGDLNAAVNAHFSE 44 (575)
Q Consensus 7 e~I~~F~siTg-as~~~A~q~Le~~~~dL~~Avn~~f~~ 44 (575)
+.|++.+++ | .....+++.|.+.+||++.||+..|+.
T Consensus 19 ~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 19 HQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 579999999 6 468888999999999999999998863
No 134
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=86.51 E-value=1.8 Score=36.06 Aligned_cols=73 Identities=7% Similarity=0.002 Sum_probs=53.4
Q ss_pred ceEEEEECC--CCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcC-----CCCcccCCCCcccchhhcCCCCCcee
Q 008174 497 AVTLLVRMP--DGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRP-----YPRRAFSDGESALTLNELGLTSKQEA 569 (575)
Q Consensus 497 ~vrIqIRLP--DGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~-----FPRR~ft~eD~skTLeElGL~Psqaa 569 (575)
+|+|.|.-. .+....+||..++||..|..-|....+..+..-+|+-. |.-+.+ +.+.||.+.|+.+ ..+
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l---~d~~tL~~Y~i~~-g~~ 77 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNM---ANDKQLGYYQCRD-EFV 77 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSC---CTTSBGGGGTCCT-TCE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEc---CCCCCHHHCCCCC-CCE
Confidence 456666632 33447899999999999999999877888888888732 222332 3479999999996 578
Q ss_pred EEEe
Q 008174 570 LFLE 573 (575)
Q Consensus 570 L~VE 573 (575)
|+|-
T Consensus 78 ihlv 81 (86)
T 4b6w_A 78 IHVV 81 (86)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8664
No 135
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=86.28 E-value=2.7 Score=36.88 Aligned_cols=78 Identities=12% Similarity=0.087 Sum_probs=58.2
Q ss_pred CceEEEEECCCCC-EEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCC--CCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 496 NAVTLLVRMPDGS-RRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPY--PRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 496 ~~vrIqIRLPDGs-Ri~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~F--PRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
..++|.|+..++. .+.++|..++||.+|..-|....+..+..-+|+-.= ++......+.++||.+.||.+ ...|+|
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~-g~~ihv 83 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRD-GYRIHA 83 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCS-SEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCC-CCEEEE
Confidence 4688888876664 689999999999999999988778888888887421 222111123479999999997 588887
Q ss_pred ee
Q 008174 573 EL 574 (575)
Q Consensus 573 E~ 574 (575)
-.
T Consensus 84 vd 85 (122)
T 1t0y_A 84 VD 85 (122)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 136
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=85.65 E-value=2.4 Score=37.83 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=56.1
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...++|.|+-.+|+.+.-+...+++|..|++......+.....++|+- =-+.|.. +.|.++|++.. +.+|-|
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlF--DG~rI~~---~~TP~dL~MED-gD~IdV 109 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF--EGQRIAD---NHTPKELGMEE-EDVIEV 109 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEE--TTEECCT---TCCTTTTTCCT-TCEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEE--CCeECCC---CCCHHHcCCCC-CCEEEE
Confidence 367899999999999999999999999999988666677778888773 3444443 68999999986 455433
No 137
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.60 E-value=2.1 Score=36.95 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=56.2
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCC-CCcccCCCCcccchhhcCCC
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPY-PRRAFSDGESALTLNELGLT 564 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~F-PRR~ft~eD~skTLeElGL~ 564 (575)
.++||+|.++--.+.+-|-.+.-+|++|+.-|-..-.+.+..|.|...+ +...| |.++||.|+||.
T Consensus 9 ~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~L---dLskSLndlgir 75 (91)
T 2daj_A 9 KTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPL---DLTKSLNDLGLR 75 (91)
T ss_dssp SCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBC---CTTSCHHHHTCS
T ss_pred cEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCccc---chhcchhhhhhh
Confidence 6799999999988899999999999999999966667889999999755 44444 468999999996
No 138
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=85.44 E-value=0.16 Score=47.00 Aligned_cols=68 Identities=19% Similarity=0.346 Sum_probs=0.0
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
.|.||..+|+.+.-.+..++||.+|..-|....+..+...+|+ |--+.|.+ +.||.++||.+ +.+|+|
T Consensus 2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D---~~tL~dygI~~-gstL~L 69 (152)
T 3u5c_f 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQK-ESTLHL 69 (152)
T ss_dssp --------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE--ECCEEccc---cCcHHHcCCCC-CCEEEE
Confidence 4778889999888889999999999999987666667777776 55566653 68999999986 466654
No 139
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.36 E-value=4.6 Score=34.81 Aligned_cols=70 Identities=10% Similarity=0.137 Sum_probs=53.1
Q ss_pred ceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 497 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 497 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...+.+++ +|+.+.-.+..++|+.+|..-|....+..+..=+|+ .||...+. .+.||.+++|.+ ..+|+|
T Consensus 9 m~~~~vk~-~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi-~~~~gkL~---D~~tLs~~~I~~-gstL~l 78 (100)
T 2dzm_A 9 MLDFRVEY-RDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLK-GWKTGDVE---DSTVLKSLHLPK-NNSLYV 78 (100)
T ss_dssp EEEEEEEC-SSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEE-CCSSSCCC---TTSBHHHHCCCS-EEEEEE
T ss_pred eEEEEEEe-CCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEE-ccCCCCCC---CcCCHHHcCCCC-CCEEEE
Confidence 46677777 777888889999999999999987777777766674 34433343 278999999996 577765
No 140
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=82.18 E-value=3.7 Score=39.85 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=55.6
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...++|.|+. +|+.+.-+...+++|..|+.......+.....++|+ |=-+.+.. +.|.++|++.. +.+|-|
T Consensus 27 ~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~--FdG~rI~~---~~TP~dL~MEd-gD~Idv 97 (200)
T 3pge_A 27 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL--YDGIRIQA---DQTPEDLDMED-NDIIEA 97 (200)
T ss_dssp CCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEE--ETTEECCT---TCCTTTTTCCT-TEEEEE
T ss_pred CCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEE--ECCEEcCC---CCCHHHcCCCC-CCEEEE
Confidence 4679999986 999999999999999999988766667777888877 34444553 68999999986 455433
No 141
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=81.60 E-value=2.2 Score=38.21 Aligned_cols=67 Identities=18% Similarity=0.080 Sum_probs=52.0
Q ss_pred EEECCCCC-EEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCC------CceeEEE
Q 008174 501 LVRMPDGS-RRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTS------KQEALFL 572 (575)
Q Consensus 501 qIRLPDGs-Ri~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~P------sqaaL~V 572 (575)
.||.-.|+ .+.-....++||.+|..-|....+..+...+|+ |-.+.+.+ ++||.+.||.. ..++|.+
T Consensus 4 fl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi--~~Gk~LeD---~~TLsdy~I~~~~a~~q~~stL~L 77 (118)
T 2fnj_B 4 FLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLY--KDDQLLDD---GKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp EEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCT---TSBHHHHTCCTTTSBTTBCEEEEE
T ss_pred EEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEE--ECCeECCC---CCCHHHcCcccccccCCCCCEEEE
Confidence 34443465 477789999999999999988778888999998 66777753 79999999993 2366665
No 142
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=81.05 E-value=3.9 Score=39.81 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=48.2
Q ss_pred EEEEeCCCCcHHHHHHHHHhcCCCCCc-CeEEEcCCCCcccC-CCCcccchhhcCCCCCceeEEEe
Q 008174 510 RGRRFLKSNKLQSLFDYIDVGRGIKAG-TYRLVRPYPRRAFS-DGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 510 i~RRF~~SDTLqdLydFVd~~~~~~p~-~F~LvT~FPRR~ft-~eD~skTLeElGL~PsqaaL~VE 573 (575)
+..+|.+.+|+++|+..|....+.... +++|-.-+-...+. ..+.++||.|++|.. +-.|+||
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~-~Q~illE 218 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQ-GQVLVIE 218 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCT-TEEEEEE
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCC-CCEEEEE
Confidence 568999999999999999876666665 79998755443332 234579999999997 5677776
No 143
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=80.49 E-value=2.6 Score=37.34 Aligned_cols=40 Identities=20% Similarity=0.416 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 008174 6 QEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEG 45 (575)
Q Consensus 6 ~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~ 45 (575)
.+.|++.+.+=-..+..+++.|.+.+||++.||+..|+.+
T Consensus 67 ~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 67 QPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 5688999888767889999999999999999999999764
No 144
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=80.40 E-value=3.9 Score=39.36 Aligned_cols=70 Identities=21% Similarity=0.246 Sum_probs=50.7
Q ss_pred ECCCC-CEEEEEeCCCCcHHHHHHHHHhcCCCCCc-CeEEEcCCCCcccC-CCCcccchhhcCCCCCceeEEEe
Q 008174 503 RMPDG-SRRGRRFLKSNKLQSLFDYIDVGRGIKAG-TYRLVRPYPRRAFS-DGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 503 RLPDG-sRi~RRF~~SDTLqdLydFVd~~~~~~p~-~F~LvT~FPRR~ft-~eD~skTLeElGL~PsqaaL~VE 573 (575)
++.+. ..+..+|.+.+|+++|+..|....+.... +++|-.-|....+. ..+.++||.+++|.. +-.|+||
T Consensus 134 ~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~-~Q~illE 206 (217)
T 4a3p_A 134 ENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQ-GQVLVIE 206 (217)
T ss_dssp ETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCT-TCEEEEE
T ss_pred ecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCC-CCEEEEE
Confidence 44443 34778999999999999999876666554 78888755444333 234579999999997 4667776
No 145
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=80.18 E-value=3.5 Score=33.70 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=35.7
Q ss_pred HHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 008174 7 EAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEGDR 47 (575)
Q Consensus 7 e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~~~ 47 (575)
+.|++.+++=-......++.|.+.+||++.||+..|+..+.
T Consensus 21 ~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~ 61 (67)
T 2dna_A 21 KEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGF 61 (67)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 37888888866777777999999999999999999998774
No 146
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=79.63 E-value=4.1 Score=39.88 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=54.3
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
...++|.|+. +|+.+.-+...+++|..|++......+..+..++|+ |=-+.|.. +.|.+++++.. ..+|-|
T Consensus 55 ~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFL--FDGqRI~~---ddTPeDLdMED-GDtIDV 125 (207)
T 3tix_A 55 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFL--YDGIEIQA---DQTPEDLDMED-NDIIEA 125 (207)
T ss_dssp CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEE--ETTEECCS---SCCTTTTTCCT-TEEEEE
T ss_pred CCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEE--ECCeecCC---CCCHHHcCCCC-CCEEEE
Confidence 4678999985 999999999999999999998866677777776665 33344443 68999999986 455543
No 147
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=79.43 E-value=3.2 Score=42.48 Aligned_cols=72 Identities=15% Similarity=0.263 Sum_probs=57.5
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcC-CCCcccCCCCcccchhhcCCCCCceeEEE
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRP-YPRRAFSDGESALTLNELGLTSKQEALFL 572 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~-FPRR~ft~eD~skTLeElGL~PsqaaL~V 572 (575)
..++|.|+. +|+.+.-.+..++|+.+|..-|....+..+..-+|+-. |.-+.+.+ +.||.++||.+ +..|+|
T Consensus 4 ~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D---~~~L~~~~ik~-g~~l~L 76 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAAD---NVKISALELKP-NFKLMM 76 (320)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCT---TSBTTSSCCC---CEEEE
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCc---cccHHHcCCCC-CCEEEE
Confidence 468899997 79889999999999999999998777888888888843 55566654 68999999997 466654
No 148
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=79.06 E-value=5.3 Score=34.42 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=58.4
Q ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEEEe
Q 008174 498 VTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALFLE 573 (575)
Q Consensus 498 vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~VE 573 (575)
-.|.|..|||.|.+-+..++.+|.+|..=+-...++.+..|.|. |-++.+. .+..+.=.||.+ ++.|-+.
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lk--h~~k~lD---LSlpfRlsgLpn-nAkLELv 79 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLK--FQRTVLD---LSLQWRFANLPN-NAKLEMV 79 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEE--ETTEEES---SSCBHHHHCCCS-SCEEEEE
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEE--eCCEecc---ccceeEecCCCC-CCEEEEE
Confidence 37889999999999999999999999887766778889999998 4467664 488999999987 6877654
No 149
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=78.66 E-value=5.5 Score=34.93 Aligned_cols=73 Identities=18% Similarity=0.158 Sum_probs=53.9
Q ss_pred CCceEEEEECCC--C--CEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeE
Q 008174 495 ENAVTLLVRMPD--G--SRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEAL 570 (575)
Q Consensus 495 ~~~vrIqIRLPD--G--sRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL 570 (575)
.+.++++|.+-| + ..+.-.+.+++||.+|..-|....++.+..-+|+ |-.+.+. .+.||.+.|+.-....|
T Consensus 20 ~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli--~ggkll~---D~~TL~~ygI~~~G~t~ 94 (105)
T 4dbg_A 20 TQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWV--IGQRLAR---DQETLHSHGVRQNGDSA 94 (105)
T ss_dssp CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE--ETTEEEC---TTCBTGGGTCCSTTCEE
T ss_pred CCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEe--ccCeEcc---CcCcHHHcCCCCCCCEE
Confidence 345666666544 3 5788899999999999999987778888887877 5666433 37999999994224666
Q ss_pred EE
Q 008174 571 FL 572 (575)
Q Consensus 571 ~V 572 (575)
++
T Consensus 95 hL 96 (105)
T 4dbg_A 95 YL 96 (105)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 150
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=76.16 E-value=4.2 Score=31.89 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=31.6
Q ss_pred CcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHH
Q 008174 4 PNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNA 40 (575)
Q Consensus 4 p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~ 40 (575)
|-.+.|.+.|++ |-|...|+|.|...+||++-|.|=
T Consensus 10 ~~~~~Ia~Lm~m-GFsr~~ai~AL~~a~nnve~Aani 45 (52)
T 2ooa_A 10 NVDAKIAKLMGE-GYAFEEVKRALEIAQNNVEVARSI 45 (52)
T ss_dssp -CHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred ChHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHH
Confidence 345889999996 999999999999999999999874
No 151
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=75.10 E-value=4.5 Score=36.31 Aligned_cols=59 Identities=19% Similarity=0.081 Sum_probs=46.9
Q ss_pred EECCCCC-EEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCC
Q 008174 502 VRMPDGS-RRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTS 565 (575)
Q Consensus 502 IRLPDGs-Ri~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~P 565 (575)
||+-.|+ .+.-....++||.+|..-|....+..+..-+|+ |--+.+.+ ++||.++||..
T Consensus 5 l~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI--~~Gk~LeD---~kTL~dy~I~~ 64 (118)
T 4ajy_B 5 LMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY--KDDQLLDD---GKTLGECGFTS 64 (118)
T ss_dssp EEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCT---TSBTTTTTCCG
T ss_pred EEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEE--eCCeECCC---cCCHHHcCCCc
Confidence 3444455 677788999999999999987778888888888 55677653 79999999985
No 152
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=74.95 E-value=15 Score=31.62 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=53.1
Q ss_pred CCceEEEEECCCCC-EEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCCCceeEE
Q 008174 495 ENAVTLLVRMPDGS-RRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTSKQEALF 571 (575)
Q Consensus 495 ~~~vrIqIRLPDGs-Ri~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~PsqaaL~ 571 (575)
...++|.|+-.+|+ .+..+...+++|+.|++......+.....++|+- =-..+.. +.|.++|++.. +..+-
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F--DG~rI~~---~~TP~dLdMED-gD~ID 94 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF--DGTKLSG---RELPADLGMES-GDLIE 94 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE--TTEECCS---CSCHHHHTCCT-TEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE--CCEEcCC---CCCHHHcCCCC-CCEEE
Confidence 46789999999995 7889999999999999887656666666777663 2333433 68999999986 34443
No 153
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=73.96 E-value=5.2 Score=31.54 Aligned_cols=40 Identities=8% Similarity=0.144 Sum_probs=34.4
Q ss_pred HHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 008174 7 EAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEGD 46 (575)
Q Consensus 7 e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~~ 46 (575)
..+.++..+==.....-++.|.+|+|||+.||++-+.-++
T Consensus 11 ~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~ 50 (54)
T 2cp8_A 11 ALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSG 50 (54)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSS
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccC
Confidence 3567777777779999999999999999999999987665
No 154
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=72.03 E-value=7.4 Score=30.82 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=38.9
Q ss_pred CCcHHHHHHHHhh-hCCCHHHHHHHHHHhcCCHHHHHHHHHhcCCCcc
Q 008174 3 RPNQEAIDTFISI-TGATESVAVQKLEEHSGDLNAAVNAHFSEGDRNT 49 (575)
Q Consensus 3 ~p~~e~I~~F~si-Tgas~~~A~q~Le~~~~dL~~Avn~~f~~~~~~~ 49 (575)
.+..+.|+++..+ =+-+..+....|++|+||++.||+..+.-.+.+.
T Consensus 7 ~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~ 54 (59)
T 1wgl_A 7 GCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPS 54 (59)
T ss_dssp SSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCC
T ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCC
Confidence 4566777777654 6889999999999999999999999998777544
No 155
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=70.57 E-value=7.7 Score=30.54 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=32.5
Q ss_pred CcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHH
Q 008174 4 PNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAH 41 (575)
Q Consensus 4 p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~ 41 (575)
|-...|.+.|++ |-+...|+|.|...+||++.|.|--
T Consensus 8 ~~e~~I~~L~~l-GF~r~~ai~AL~~a~nnve~Aa~iL 44 (53)
T 2d9s_A 8 QLSSEIERLMSQ-GYSYQDIQKALVIAHNNIEMAKNIL 44 (53)
T ss_dssp CSHHHHHHHHHH-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred chHHHHHHHHHc-CCCHHHHHHHHHHhcCCHHHHHHHH
Confidence 445679999996 9999999999999999999998754
No 156
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=69.27 E-value=6.6 Score=35.01 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=32.8
Q ss_pred HHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhc
Q 008174 7 EAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSE 44 (575)
Q Consensus 7 e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~ 44 (575)
+.|.+|+++ |=+...|...|.+|++|++.||+-.|+-
T Consensus 78 ~~v~~L~eM-GF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 78 QLMSKFKEM-GFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 568888886 7899999999999999999999988864
No 157
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=55.12 E-value=22 Score=27.25 Aligned_cols=40 Identities=18% Similarity=0.320 Sum_probs=32.3
Q ss_pred HHHHHHHhh-hCCCHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 008174 7 EAIDTFISI-TGATESVAVQKLEEHSGDLNAAVNAHFSEGD 46 (575)
Q Consensus 7 e~I~~F~si-Tgas~~~A~q~Le~~~~dL~~Avn~~f~~~~ 46 (575)
+.++..+.+ =..+..++..-|++++||++.||+......+
T Consensus 6 ~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~ 46 (49)
T 1otr_A 6 SKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEND 46 (49)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 344444444 7889999999999999999999999887654
No 158
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=54.97 E-value=14 Score=35.94 Aligned_cols=37 Identities=27% Similarity=0.156 Sum_probs=33.8
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 008174 6 QEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHF 42 (575)
Q Consensus 6 ~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f 42 (575)
...|.+....||+.--.....|.+++||++.|++--=
T Consensus 4 a~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~LR 40 (196)
T 1aip_C 4 MELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLR 40 (196)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5789999999999999999999999999999998653
No 159
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=51.61 E-value=15 Score=37.40 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=35.1
Q ss_pred CcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 008174 4 PNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHF 42 (575)
Q Consensus 4 p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f 42 (575)
.+...|.+....||+.--...+.|.+++||++.|++---
T Consensus 3 ~ta~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR 41 (291)
T 1xb2_B 3 SSKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLH 41 (291)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 356789999999999999999999999999999998664
No 160
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=48.18 E-value=67 Score=32.59 Aligned_cols=70 Identities=24% Similarity=0.273 Sum_probs=48.4
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCC-CCcCeEEEcCCCC----cccCCCCcccchhhcCCCC
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGI-KAGTYRLVRPYPR----RAFSDGESALTLNELGLTS 565 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~-~p~~F~LvT~FPR----R~ft~eD~skTLeElGL~P 565 (575)
....|.|.||||+...-.+..+.+.++|++-|....+. ....|.|...-+- ....-.+.+++|.+.+..+
T Consensus 84 ~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~ 158 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEE 158 (371)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCT
T ss_pred ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCC
Confidence 34778899999999999999999999999999655554 3557888765441 1222224567777766543
No 161
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=48.12 E-value=22 Score=31.63 Aligned_cols=41 Identities=10% Similarity=0.410 Sum_probs=36.6
Q ss_pred CcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 008174 4 PNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEG 45 (575)
Q Consensus 4 p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~ 45 (575)
+++++|++++++ |=+...+.+.|.++|+|.+.|+|-.|+-.
T Consensus 7 ~e~~~v~~l~~M-GFp~~~~~kAl~~~g~~~e~amewL~~h~ 47 (118)
T 4ae4_A 7 SERQCVETVVNM-GYSYECVLRAMKAAGANIEQILDYLFAHG 47 (118)
T ss_dssp HHHHHHHHHHHT-TCCHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHCcCHHHHHHHHHHhc
Confidence 467889999886 99999999999999999999999998764
No 162
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=42.69 E-value=22 Score=28.24 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=33.9
Q ss_pred CcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHh
Q 008174 4 PNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFS 43 (575)
Q Consensus 4 p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~ 43 (575)
|..+.|.+.|++ |=|..-|+|.|.-.++|+|-|.|-...
T Consensus 6 p~e~~Ia~L~sm-Gfsr~da~~AL~ia~Ndv~~AtNiLlE 44 (56)
T 2juj_A 6 QLSSEIENLMSQ-GYSYQDIQKALVIAQNNIEMAKNILRE 44 (56)
T ss_dssp HHHHHHHHHHTT-TCCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CChHHHHHHHHc-CCCHHHHHHHHHHhcccHHHHHHHHHH
Confidence 456789999996 999999999999999999999886543
No 163
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=42.37 E-value=12 Score=39.10 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=36.3
Q ss_pred CcHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhc
Q 008174 4 PNQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSE 44 (575)
Q Consensus 4 p~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~ 44 (575)
+..++|++.|++ |-++..+++.|...+||++.||+..|+.
T Consensus 167 ~~~~~i~~l~~M-Gf~~~~~~~AL~a~~nn~~~A~e~L~~g 206 (368)
T 1oqy_A 167 EYETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLTG 206 (368)
T ss_dssp THHHHHHHHHTT-TCCSHHHHHHHHHSCSSTTHHHHTTTTS
T ss_pred chHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 467889999998 8999999999999999999999999864
No 164
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.08 E-value=50 Score=26.78 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=36.3
Q ss_pred CcHHHHHHHHhh-hCCCHHHHHHHHHHhcCCHHHHHHHHHhcCCCc
Q 008174 4 PNQEAIDTFISI-TGATESVAVQKLEEHSGDLNAAVNAHFSEGDRN 48 (575)
Q Consensus 4 p~~e~I~~F~si-Tgas~~~A~q~Le~~~~dL~~Avn~~f~~~~~~ 48 (575)
|..++++++.++ =.-+..+...-|++++||++.||+..+.-.+.+
T Consensus 17 ~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~ 62 (67)
T 2dhy_A 17 EFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLES 62 (67)
T ss_dssp CSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCC
Confidence 556777777664 578899999999999999999999998755433
No 165
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=42.03 E-value=6.8 Score=33.26 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=17.0
Q ss_pred CCCCCccchhhhhhhhhhhH
Q 008174 232 RQPHLEDVDLAHAVSLSLRT 251 (575)
Q Consensus 232 ~~~~~ed~d~a~avslsl~~ 251 (575)
+....+|+||.+||-|||+.
T Consensus 6 ~~~~~eDeDLkrAieLSL~E 25 (81)
T 1q0v_A 6 STPEDEEELIRKAIELSLKE 25 (81)
T ss_dssp CCCSSHHHHHHHHHHHHHHC
T ss_pred ccccCchHHHHHHHHHhHHH
Confidence 45567899999999999975
No 166
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=38.45 E-value=6.6 Score=37.77 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=0.0
Q ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchh
Q 008174 499 TLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLN 559 (575)
Q Consensus 499 rIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLe 559 (575)
.|-||..+|+.+.-....++||.+|...|....+..+...+|+ |--+.|.+ +.||.
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLI--f~GK~LeD---~~TLs 57 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLV--NNGFIAPN---TELVT 57 (189)
T ss_dssp -------------------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEE--ecCeECCC---CCccc
Confidence 4678989999988899999999999999987767777788887 55566653 46776
No 167
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=38.03 E-value=56 Score=29.01 Aligned_cols=43 Identities=23% Similarity=0.330 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcCCCcc
Q 008174 6 QEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAHFSEGDRNT 49 (575)
Q Consensus 6 ~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~~~~~ 49 (575)
-+.|..+|+=|+-+-..-+|.|-+++|||++ .-.|+.++.++.
T Consensus 14 ~~~i~~lMeef~~DL~sVTqAlLK~SGel~a-t~~fL~~~~r~d 56 (111)
T 3k6g_A 14 IKIIRQLMEKFNLDLSTVTQAFLKNSGELEA-TSAFLASGQRAD 56 (111)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHH-HHHHHHHSSCTT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHccccHHH-HHHHHhCCCcCC
Confidence 4789999999999999999999999999954 456766665443
No 168
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.14 E-value=55 Score=27.55 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhCCC-HHHHHHHHHHhcCCHHHHHHHH
Q 008174 6 QEAIDTFISITGAT-ESVAVQKLEEHSGDLNAAVNAH 41 (575)
Q Consensus 6 ~e~I~~F~siTgas-~~~A~q~Le~~~~dL~~Avn~~ 41 (575)
+-.+++.-.|||.- ...-.+.|+..+|||.+||-=.
T Consensus 25 q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~L 61 (80)
T 1vdl_A 25 QTFLNQLREITGINDAQILQQALKDSNGNLELAVAFL 61 (80)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHH
Confidence 34789999999985 5666789999999999999644
No 169
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=30.53 E-value=66 Score=31.84 Aligned_cols=46 Identities=15% Similarity=-0.003 Sum_probs=37.1
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCC-CcCeEEE
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIK-AGTYRLV 541 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~-p~~F~Lv 541 (575)
..+.+.|.|+||+.+.-.+.++.|.++|++-|....++. ..-|.|.
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~ 62 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLA 62 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEE
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEE
Confidence 467899999999999999999999999999997655543 3456665
No 170
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=30.46 E-value=88 Score=24.40 Aligned_cols=40 Identities=33% Similarity=0.429 Sum_probs=30.9
Q ss_pred HHHHHHH-hhhCCCHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 008174 7 EAIDTFI-SITGATESVAVQKLEEHSGDLNAAVNAHFSEGD 46 (575)
Q Consensus 7 e~I~~F~-siTgas~~~A~q~Le~~~~dL~~Avn~~f~~~~ 46 (575)
++|.+-. -+-|-|..+-++-|.+.+.|+|.|||..++--|
T Consensus 11 ~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRDd 51 (53)
T 2qho_B 11 ELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRDD 51 (53)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC---
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhcccc
Confidence 4555543 357999999999999999999999999876544
No 171
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=29.97 E-value=1.6e+02 Score=25.41 Aligned_cols=65 Identities=20% Similarity=0.184 Sum_probs=48.3
Q ss_pred CCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCC
Q 008174 495 ENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTS 565 (575)
Q Consensus 495 ~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~P 565 (575)
...++|.|| -+|..+.-+-..+++|+.|++-.....+..+...+++ |--..+.. +.|-++||+..
T Consensus 19 ~~~IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFl--fDG~rI~~---~~TP~~L~meD 83 (95)
T 2l76_A 19 PRLFPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLL--FGETELSP---TATPRTLKLGV 83 (95)
T ss_dssp CCCEEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEE--ETTEECCT---TSCHHHHTCCS
T ss_pred CCeEEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEE--ECCcCCCC---CCCHhHcCCCC
Confidence 345999999 5888999999999999999987654556777777665 33333443 57888888875
No 172
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=29.22 E-value=10 Score=28.57 Aligned_cols=40 Identities=38% Similarity=0.386 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhHHHHhhccCCCCCCCCCCCccchhhhhhhhhhh
Q 008174 205 IEEEMIRAAIEASKQEAENVSGAGTEHRQPHLEDVDLAHAVSLSLR 250 (575)
Q Consensus 205 ieeemiraaieask~~~~~~~~~~~~~~~~~~ed~d~a~avslsl~ 250 (575)
-||||+--|...|.+|+...++ ++..||.-|-+||.-||.
T Consensus 5 tEEEq~ALA~rmSeQEA~~vn~------~eE~EdellrKAIaESLn 44 (45)
T 3a1q_C 5 SEEEQFALALKMSEQEAREVNN------QEEKEEELLRKAIAESLN 44 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhHHHHHHhhh------HHHHHHHHHHHHHHHHhc
Confidence 3899999999999998876633 233455556777765553
No 173
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=29.14 E-value=85 Score=24.04 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=31.5
Q ss_pred cHHHHHHHHhhhCCCHHHHHHHHHHhcCCHHHHHHHH
Q 008174 5 NQEAIDTFISITGATESVAVQKLEEHSGDLNAAVNAH 41 (575)
Q Consensus 5 ~~e~I~~F~siTgas~~~A~q~Le~~~~dL~~Avn~~ 41 (575)
-...|.+.|+. |=|..-|+|.|--.++|++.|.|--
T Consensus 4 ~e~~I~~L~s~-Gf~~~~~~rAL~ia~Nnie~A~nIL 39 (46)
T 2oo9_A 4 LSSEIENLMSQ-GYSYQDIQKALVIAQNNIEMAKNIL 39 (46)
T ss_dssp HHHHHHHHHHT-TBCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hHHHHHHHHHc-CCCHHHHHHHHHHhhccHHHHHHHH
Confidence 35678999885 8999999999999999999998854
No 174
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=28.91 E-value=1.7e+02 Score=29.49 Aligned_cols=72 Identities=14% Similarity=0.117 Sum_probs=53.8
Q ss_pred ceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCC----CCCcCeEEEc--CCCCcccCCCCcccchhhcCCCCCceeE
Q 008174 497 AVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRG----IKAGTYRLVR--PYPRRAFSDGESALTLNELGLTSKQEAL 570 (575)
Q Consensus 497 ~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~----~~p~~F~LvT--~FPRR~ft~eD~skTLeElGL~PsqaaL 570 (575)
...|.|+++ +...+-+|.++.+|.++...|..... .....|.|.- ..|++-.-. +..+||...|+.+ +..|
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl-~~~~~l~~y~~~~-~~~l 79 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWL-EAGKALDYYMLRN-GDTM 79 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEEC-CTTSBGGGGTCCT-TCEE
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEec-cCCCCHHHhCCCC-Ccee
Confidence 467889998 77788899999999999999854322 2467899886 457775544 3467999999986 3555
Q ss_pred E
Q 008174 571 F 571 (575)
Q Consensus 571 ~ 571 (575)
.
T Consensus 80 ~ 80 (371)
T 3ivf_A 80 E 80 (371)
T ss_dssp E
T ss_pred e
Confidence 4
No 175
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=27.58 E-value=13 Score=36.89 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=0.0
Q ss_pred CCCCCCCCCCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCcCeEEEcCCCCcccCCCCcccchhhcCCCC
Q 008174 487 PQEPAPDDENAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIKAGTYRLVRPYPRRAFSDGESALTLNELGLTS 565 (575)
Q Consensus 487 P~EP~~~~~~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~p~~F~LvT~FPRR~ft~eD~skTLeElGL~P 565 (575)
.|+|.+ ...++|.| -.+|+.+.-+...+++|..|++......+..+..++|+ |--+.+.. +.|.+++++..
T Consensus 13 ~~~~~p--~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFL--FDGqRI~d---ddTPadL~MED 83 (227)
T 3v7o_A 13 KPEVKP--ETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL--YDGIRIQA---DQTPEDLDMED 83 (227)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CCCCCC--CCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEE--ECCEecCC---CCCHHHcCCCC
Confidence 344443 35678888 55999999999999999999998755556666666665 43444443 67888888875
No 176
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=25.77 E-value=9.3 Score=28.86 Aligned_cols=39 Identities=38% Similarity=0.405 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhHHHHhhccCCCCCCCCCCCccchhhhhhhhhhh
Q 008174 206 EEEMIRAAIEASKQEAENVSGAGTEHRQPHLEDVDLAHAVSLSLR 250 (575)
Q Consensus 206 eeemiraaieask~~~~~~~~~~~~~~~~~~ed~d~a~avslsl~ 250 (575)
||||+--|+..|.+|+.+.++ +...||.-|-+||--||.
T Consensus 3 EEEq~ALA~kmSeQEA~~vn~------~eE~E~~llrKAIaESLn 41 (46)
T 2rr9_C 3 EEEQFALALKMSEQEAREVNS------QEEEEEELLRKAIAESLN 41 (46)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHhhh------HHHHHHHHHHHHHHHHHH
Confidence 688888888888888877632 233445456666655553
No 177
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=23.95 E-value=75 Score=27.83 Aligned_cols=42 Identities=7% Similarity=0.008 Sum_probs=36.3
Q ss_pred CcHHHHHHHHhhhCCCHHHHHHHHHHhcC-CHHHHHHHHHhcCC
Q 008174 4 PNQEAIDTFISITGATESVAVQKLEEHSG-DLNAAVNAHFSEGD 46 (575)
Q Consensus 4 p~~e~I~~F~siTgas~~~A~q~Le~~~~-dL~~Avn~~f~~~~ 46 (575)
++.+.+++.|+ =|=++..|...|..+++ |++.|++-.+...+
T Consensus 2 ~d~~~l~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~ 44 (126)
T 2lbc_A 2 IDESSVMQLAE-MGFPLEACRKAVYFTGNMGAEVAFNWIIVHME 44 (126)
T ss_dssp CCTHHHHHHHT-TSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHHhcc
Confidence 56688899988 59999999999999976 89999999887654
No 178
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.22 E-value=5.8e+02 Score=26.85 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=3.5
Q ss_pred HHHHccCCCCCC
Q 008174 480 AAKEASLPQEPA 491 (575)
Q Consensus 480 ~~K~asLP~EP~ 491 (575)
+.+...+..-|+
T Consensus 575 ~~l~~~~~~~~~ 586 (597)
T 3oja_B 575 KQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHTTC----
T ss_pred HHHHHHhcCCCc
Confidence 333345554443
No 179
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=27.33 E-value=19 Score=32.80 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=30.6
Q ss_pred HHHHHHHhhhCCC-HHHHHHHHHHhcCCHHHHHHHH
Q 008174 7 EAIDTFISITGAT-ESVAVQKLEEHSGDLNAAVNAH 41 (575)
Q Consensus 7 e~I~~F~siTgas-~~~A~q~Le~~~~dL~~Avn~~ 41 (575)
-.+++.-.|||-- ...-.+.|+..+|||.+||-=+
T Consensus 20 ~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~L 55 (129)
T 2lva_A 20 MLLNQLREITGIQDPSFLHEALKASNGDITQAVSLL 55 (129)
Confidence 4789999999998 7777889999999999999655
No 180
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=21.51 E-value=1.5e+02 Score=31.78 Aligned_cols=48 Identities=10% Similarity=0.083 Sum_probs=39.8
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCC--CcCeEEEcC
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIK--AGTYRLVRP 543 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~--p~~F~LvT~ 543 (575)
..+.+.|.|+||+.+.-.+..+.+.++|++-|....+.. ...|.|...
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~ 264 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEY 264 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEE
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEE
Confidence 457899999999999999999999999999997666664 346888753
No 181
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=20.74 E-value=1.3e+02 Score=29.68 Aligned_cols=66 Identities=12% Similarity=0.037 Sum_probs=46.2
Q ss_pred CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCC-CcCeEEEcCCCCcccCCCCcccchhhcCC
Q 008174 496 NAVTLLVRMPDGSRRGRRFLKSNKLQSLFDYIDVGRGIK-AGTYRLVRPYPRRAFSDGESALTLNELGL 563 (575)
Q Consensus 496 ~~vrIqIRLPDGsRi~RRF~~SDTLqdLydFVd~~~~~~-p~~F~LvT~FPRR~ft~eD~skTLeElGL 563 (575)
..+.+.|.|+|| .+.-.+.++.+.++|++-|....+.. ..-|.|.-. .+....-.+.+++|.+.+.
T Consensus 21 ~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~-~~~~~~wL~~~~~i~~q~~ 87 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKKVLDHDV 87 (314)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEE-ETTEEEECCTTSBGGGSSC
T ss_pred CeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEE-eCCcCeeCCCccCHHHcCC
Confidence 458899999999 68889999999999999986544443 456777644 3322222245677777654
Done!