BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008175
(575 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 154/589 (26%), Positives = 262/589 (44%), Gaps = 120/589 (20%)
Query: 51 QRVNDLIGRLSLQEKVKLLI---------------SGAAA----VPRLGIKGYEWWSEAL 91
++VN+++ +L+L+EKVKL++ +GAA VPR+G+ + ++
Sbjct: 2 EKVNEILSQLTLEEKVKLVVGVGLPGLFGNPHSRVAGAAGETHPVPRVGLPAF-VLADGP 60
Query: 92 HGVSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLT 151
G+ + P + + T+FP I AS++N L E +G+ + +E R G L
Sbjct: 61 AGL-RINPTRENDENTYYTTAFPVEIMLASTWNRELLEEVGKAMGEEVREY---GVDVLL 116
Query: 152 YWSPNVNIFRDPRWGRGQETPGEDPVLSGKYAASYVRGLQGSDGDRLKVAASCKHFTAYD 211
+P +NI R+P GR E EDPVLSG+ A+S+V+G+Q S G V A KHF A
Sbjct: 117 --APAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQ-SQG----VGACIKHFVA-- 167
Query: 212 LDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNIL 271
N +R + VS++ + + + F + V + K SVM +YN++NG + +L
Sbjct: 168 --NNQETNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLL 225
Query: 272 KRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDC-GPFLGLHTE 330
K+ +R EW G+++SD + P + ++AG DL G ++TE
Sbjct: 226 KKVLREEWGFEGFVMSDW----------YAGDNP----VEQLKAGNDLIMPGKAYQVNTE 271
Query: 331 ---------SAVQRGLLSEIDINNALVNTLTVQMRLGMFDGEPSSQPYGHLGPKDVCTPD 381
A++ G LSE ++ + N L V + PS + Y + D+
Sbjct: 272 RRDEIEEIMEALKEGKLSEEVLDECVRNILKVLVNA------PSFKNYRYSNKPDL--EK 323
Query: 382 HQELALEAARQGIVLLKNQGPSLPLSHIRHRTVAVIGPNSDVTVTMIGNYAGIACGYTTP 441
H ++A EA +G+VLL+N+ +LPLS + +A+ G T+ G G T P
Sbjct: 324 HAKVAYEAGAEGVVLLRNE-EALPLSE--NSKIALFGTGQIETIK-----GGTGSGDTHP 375
Query: 442 ------LQGIGRYARTIHQQGCKDVACADDQL------------FGAAI----------- 472
L+GI ++ K ++ +G I
Sbjct: 376 RYAISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSE 435
Query: 473 ----DASRQADATILVMGLDQSIEAEALDRA----GLLLPGRQQELVSKVS--MASKGPT 522
+++ D ++V+ I E DR L + +L+ VS +G
Sbjct: 436 KEIHKLAKKNDVAVIVIS---RISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKK 492
Query: 523 ILVLMS-GGPIDVAFAKNDPRIAAIIWAGYPGQAGGTAIADILFGTSNP 570
++VL++ G P++V ++ ++W GQ G +AD+L G NP
Sbjct: 493 VIVLLNIGSPVEVVSWRDLVDGILLVWQA--GQETGRIVADVLTGRINP 539
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 112/421 (26%), Positives = 192/421 (45%), Gaps = 74/421 (17%)
Query: 52 RVNDLIGRLSLQEKVKLL----------ISGAAAVPRLGIKGYEWWSEALHGVSNVGPGT 101
R +L+ +++L EK+ + + VPRLGI ++ +G+ VG
Sbjct: 53 RAAELVAQMTLDEKISFVHWALDPDRQNVGYLPGVPRLGIPELRA-ADGPNGIRLVGQT- 110
Query: 102 KFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLTYWSPNVNIFR 161
AT+ P + AS+F+ T+ ++ G+V+ + RA+ G P +N R
Sbjct: 111 --------ATALPAPVALASTFDDTMADSYGKVMGRDGRALNQDMVLG-----PMMNNIR 157
Query: 162 DPRWGRGQETPGEDPVLSGKYAASYVRGLQGSDGDRLKVAASCKHFTAYDLDNWNGVDRF 221
P GR ET EDP++S + A + ++G+QG+ + + KHF A + +N +RF
Sbjct: 158 VPHGGRNYETFSEDPLVSSRTAVAQIKGIQGAG-----LMTTAKHFAANNQEN----NRF 208
Query: 222 HFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRL 281
NA V +Q + + + P + AS MC+YN +NG P+C + +L +R +W
Sbjct: 209 SVNANVDEQTLRE-IEFPAFEASSKAGAASFMCAYNGLNGKPSCGNDELLNNVLRTQWGF 267
Query: 282 NGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCG----------------PFL 325
G+++SD + +TP DAI GLD + G F
Sbjct: 268 QGWVMSD------------WLATP---GTDAITKGLDQEMGVELPGDVPKGEPSPPAKFF 312
Query: 326 GLHTESAVQRGLLSEIDINNALVNTLTVQMRLGMFDGEPSSQPYGHLGPKDVCTPDHQEL 385
G ++AV G + E + + + + G+ P+ +P +D Q +
Sbjct: 313 GEALKTAVLNGTVPEAAVTRSAERIVGQMEKFGLLLATPAPRPE-----RDKA--GAQAV 365
Query: 386 ALEAARQGIVLLKNQGPSLPLSHIRHRTVAVIGPNS-DVTVTMIGNYAGIACGYTTPLQG 444
+ + A G VLL+N+G +LPL+ +++AVIGP + D VT +G+ + PL
Sbjct: 366 SRKVAENGAVLLRNEGQALPLAGDAGKSIAVIGPTAVDPKVTGLGSAHVVPDSAAAPLDT 425
Query: 445 I 445
I
Sbjct: 426 I 426
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 472 IDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGP 531
+ ++R+A T +V D E +DR L LPG Q +L+S V+ A+ TI+VL +G
Sbjct: 560 VKSARKAR-TAVVFAYDDGTEG--VDRPNLSLPGTQDKLISAVADANPN-TIVVLNTGSS 615
Query: 532 IDVAFAKNDPRIAAIIWAGYPGQAGGTAIADILFGTSNP 570
+ + + R +W YPGQAG A A +L+G NP
Sbjct: 616 VLMPWLSKT-RAVLDMW--YPGQAGAEATAALLYGDVNP 651
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 135 bits (340), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 153/589 (25%), Positives = 262/589 (44%), Gaps = 120/589 (20%)
Query: 51 QRVNDLIGRLSLQEKVKLLI---------------SGAAA----VPRLGIKGYEWWSEAL 91
++VN+++ +L+L+EKVKL++ +GAA VPR+G+ + ++
Sbjct: 2 EKVNEILSQLTLEEKVKLVVGVGLPGLFGNPHSRVAGAAGETHPVPRVGLPAF-VLADGP 60
Query: 92 HGVSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLT 151
G+ + P + + T+FP I AS++N L E +G+ + +E R G L
Sbjct: 61 AGL-RINPTRENDENTYYTTAFPVEIMLASTWNRELLEEVGKAMGEEVREY---GVDVLL 116
Query: 152 YWSPNVNIFRDPRWGRGQETPGEDPVLSGKYAASYVRGLQGSDGDRLKVAASCKHFTAYD 211
+P +NI R+P GR E EDPVLSG+ A+S+V+G+Q S G V A KHF A
Sbjct: 117 --APAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQ-SQG----VGACIKHFVA-- 167
Query: 212 LDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNIL 271
N +R + VS++ + + + F + V + K SVM +YN++NG + +L
Sbjct: 168 --NNQETNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLL 225
Query: 272 KRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDC-GPFLGLHTE 330
K+ +R EW G+++S +Y + + ++AG DL G ++TE
Sbjct: 226 KKVLREEWGFEGFVMS------AWYAGDN--------PVEQLKAGNDLIMPGKAYQVNTE 271
Query: 331 ---------SAVQRGLLSEIDINNALVNTLTVQMRLGMFDGEPSSQPYGHLGPKDVCTPD 381
A++ G LSE ++ + N L V + PS + Y + D+
Sbjct: 272 RRDEIEEIMEALKEGKLSEEVLDECVRNILKVLVNA------PSFKNYRYSNKPDL--EK 323
Query: 382 HQELALEAARQGIVLLKNQGPSLPLSHIRHRTVAVIGPNSDVTVTMIGNYAGIACGYTTP 441
H ++A EA +G+VLL+N+ +LPLS + +A+ G T+ G G T P
Sbjct: 324 HAKVAYEAGAEGVVLLRNE-EALPLSE--NSKIALFGTGQIETIK-----GGTGSGDTHP 375
Query: 442 ------LQGIGRYARTIHQQGCKDVACADDQL------------FGAAI----------- 472
L+GI ++ K ++ +G I
Sbjct: 376 RYAISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSE 435
Query: 473 ----DASRQADATILVMGLDQSIEAEALDRA----GLLLPGRQQELVSKVS--MASKGPT 522
+++ D ++V+ I E DR L + +L+ VS +G
Sbjct: 436 KEIHKLAKKNDVAVIVIS---RISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKK 492
Query: 523 ILVLMS-GGPIDVAFAKNDPRIAAIIWAGYPGQAGGTAIADILFGTSNP 570
++VL++ G P++V ++ ++W GQ G +AD+L G NP
Sbjct: 493 VIVLLNIGSPVEVVSWRDLVDGILLVWQA--GQETGRIVADVLTGRINP 539
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 110/347 (31%), Positives = 171/347 (49%), Gaps = 39/347 (11%)
Query: 86 WWSEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNG 145
W ++A+HG SNV GAT FP I ++ + L + IG+ + E A
Sbjct: 107 WGTDAMHGHSNV----------YGATLFPHNIGLGAARDTDLIKRIGQATAKEVAA---- 152
Query: 146 GTAGLTY-WSPNVNIFRDPRWGRGQETPGEDPVLSGKYAASYVRGLQGSDG-DRLKVA-- 201
G+ + ++P V + RD RWGR E+ EDP L +YA V G+QG G D LK +
Sbjct: 153 --TGIEWSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQGDVGADFLKGSNR 210
Query: 202 -ASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVN 260
A+ KHF D GVDR N + ++ + D + + +G V SVM S+N N
Sbjct: 211 IATAKHFVG-DGGTERGVDRG--NTLIDEKGLRDIHSAGYFSAINQG-VQSVMASFNSWN 266
Query: 261 GVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPE-EAAADAIRAGLDL 319
G D ++L ++ + +G++VSD ++ F + E A AI AG+D+
Sbjct: 267 GKRVHGDKHLLTDVLKNQLGFDGFVVSD-------WNAHKFVEGCDLEQCAQAINAGVDV 319
Query: 320 DCGP--FLGLH--TESAVQRGLLSEIDINNALVNTLTVQMRLGMF-DGEPSSQPYGHLGP 374
P F + T V+ G+++E IN+A+ L ++R G+F +PS++P P
Sbjct: 320 IMVPEHFEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKSKPSARPESQ-HP 378
Query: 375 KDVCTPDHQELALEAARQGIVLLKNQGPSLPLSHIRHRTVAVIGPNS 421
+ + +H+ LA EA R+ +VLLKN LP+ VA G N+
Sbjct: 379 QWLGAAEHRTLAREAVRKSLVLLKNNESILPIKASSRILVAGKGANA 425
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 110/347 (31%), Positives = 171/347 (49%), Gaps = 39/347 (11%)
Query: 86 WWSEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNG 145
W ++A+HG SNV GAT FP I ++ + L + IG+ + E A
Sbjct: 107 WGTDAMHGHSNV----------YGATLFPHNIGLGAARDTDLIKRIGQATAKEVAA---- 152
Query: 146 GTAGLTY-WSPNVNIFRDPRWGRGQETPGEDPVLSGKYAASYVRGLQGSDG-DRLKVA-- 201
G+ + ++P V + RD RWGR E+ EDP L +YA V G+QG G D LK +
Sbjct: 153 --TGIEWSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQGDVGADFLKGSNR 210
Query: 202 -ASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVN 260
A+ KHF D GVDR N + ++ + D + + +G V SVM S+N N
Sbjct: 211 IATAKHFVG-DGGTERGVDRG--NTLIDEKGLRDIHSAGYFSAINQG-VQSVMASFNSWN 266
Query: 261 GVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPE-EAAADAIRAGLDL 319
G D ++L ++ + +G++VSD ++ F + E A AI AG+D+
Sbjct: 267 GKRVHGDKHLLTDVLKNQLGFDGFVVSD-------WNAHKFVEGCDLEQCAQAINAGVDV 319
Query: 320 DCGP--FLGLH--TESAVQRGLLSEIDINNALVNTLTVQMRLGMF-DGEPSSQPYGHLGP 374
P F + T V+ G+++E IN+A+ L ++R G+F +PS++P P
Sbjct: 320 IMVPEHFEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKSKPSARPESQ-HP 378
Query: 375 KDVCTPDHQELALEAARQGIVLLKNQGPSLPLSHIRHRTVAVIGPNS 421
+ + +H+ LA EA R+ +VLLKN LP+ VA G N+
Sbjct: 379 QWLGAAEHRTLAREAVRKSLVLLKNNESILPIKASSRILVAGKGANA 425
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 119/412 (28%), Positives = 180/412 (43%), Gaps = 65/412 (15%)
Query: 53 VNDLIGRLSLQEKVKLLIS----GAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGDFP 108
V L+ L+ EK+ LL + + RLGI S+ +G+ GTKF F
Sbjct: 6 VEQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVRV-SDGPNGIR----GTKF---FD 57
Query: 109 GATS--FPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWG 166
G S FP AS+F+ L E G++++ E+ A G P N+ R P G
Sbjct: 58 GVPSGCFPNGTGLASTFDRDLLETAGKLMAKESIAKNAAVILG-----PTTNMQRGPLGG 112
Query: 167 RGQETPGEDPVLSGKYAASYVRGLQGSDGDRLKVAASCKHFTAYDLDNWNGVDRFHFNAK 226
RG E+ EDP L+G +S V+G+QG +AA+ KHF DL++ RF N+
Sbjct: 113 RGFESFSEDPYLAGMATSSVVKGMQGEG-----IAATVKHFVCNDLED----QRFSSNSI 163
Query: 227 VSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIV 286
VS++ + + + PFR+ V +M +YN+VNG +L +R EW+ +G ++
Sbjct: 164 VSERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKKLLIDILRDEWKWDGMLM 223
Query: 287 SDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCGPFLGLHTESAVQRGLLSEIDINNA 346
SD G Y A AI+ GLD++ T + V L S I
Sbjct: 224 SDW--FGTY------------TTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTE 269
Query: 347 LVNTLTVQM------------RLGMFDGEPSSQPYGHLGPKDVCTPDHQELALEAARQGI 394
V+ Q+ + G+ + P S T + +L + A I
Sbjct: 270 DVDDRVRQVLKMIKFVVDNLEKTGIVENGPESTSNN--------TKETSDLLRKIAADSI 321
Query: 395 VLLKNQGPSLPLSHIRHRTVAVIGPNSDVTVTMIGNYAGIACGY-TTPLQGI 445
VLLKN+ LPL + + VIGPN+ + G A + Y +P +GI
Sbjct: 322 VLLKNKNNILPLK--KEDNIIVIGPNAKAKTSSGGGSASMNSYYVVSPYEGI 371
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 461 ACADDQLFGAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKG 520
A DD+ A + + + D +L++GL+ E E DR + LP R ELV V A+
Sbjct: 557 AIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPN 616
Query: 521 PTILVLMSGGPIDVAFAKNDPRIAAIIWAGYPGQAGGTAIADILFGTSNP 570
T++V SG P++ + ++ A++ A Y G G AIAD+L+G P
Sbjct: 617 -TVIVNQSGTPVEFPWLED---ANALVQAWYGGNELGNAIADVLYGDVVP 662
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 157/587 (26%), Positives = 246/587 (41%), Gaps = 106/587 (18%)
Query: 48 PIPQRVNDLIGRLSLQEKVKL---------------------LISGAAAVPRLGIKGYEW 86
P+ RV DL+GR++L EK+ L+SG +VPR G EW
Sbjct: 11 PVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKGATAKEW 70
Query: 87 WSEALHGVSNVGPGTKFG-------------GDFPGATSFPQVITTASSFNATLWEAIGR 133
+ + G T+ G + GAT FP + ++ + L + IG
Sbjct: 71 -QDMVDGFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDPYLVKRIGE 129
Query: 134 VVSDEARAMYNGGTAGLTY-WSPNVNIFRDPRWGRGQETPGED-----------PVLSGK 181
+ E RA G+ Y ++P + + RDPRWGR E+ ED P L G
Sbjct: 130 ATALEVRA------TGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGLQGD 183
Query: 182 YAASYVRGLQGSDGDRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFR 241
+ G+ G + KVAA KHF + VD + N + ++ +P
Sbjct: 184 VPKDFTSGMPFVAG-KNKVAACAKHFVG----DGGTVDGINENNTIINREGLMNIHMPAY 238
Query: 242 MCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHF 301
M+ V++VM SY+ NGV A+ +++ ++ + G+++SD + G+ T
Sbjct: 239 KNAMDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWE--GIDRITTPA 296
Query: 302 TSTPEEAAADAIRAGLDLDCGP-----FLGLHTESAVQRGLLSEIDINNALVNTLTVQMR 356
S + +I AGLD+ P F+ + T V G++ I++A+ L V+
Sbjct: 297 GSDYSYSVKASILAGLDMIMVPNKYQQFISILT-GHVNGGVIPMSRIDDAVTRILRVKFT 355
Query: 357 LGMFDGEPSSQPYGHLGPKDVCTPDHQELALEAARQGIVLLKN-----QGPSLPLSHIRH 411
+G+F+ P + P + + +H++LA EAAR+ +VLLKN P LPL +
Sbjct: 356 MGLFE-NPYADP---AMAEQLGKQEHRDLAREAARKSLVLLKNGKTSTDAPLLPLPK-KA 410
Query: 412 RTVAVIGPNSDVTVTMIGNYAGIAC-GYTTPLQG-IGRYARTIHQQGCKDVACADDQ--- 466
+ V G ++D G C G+T QG GR T+ + V A D
Sbjct: 411 PKILVAGSHAD--------NLGYQCGGWTIEWQGDTGR--TTVGTTILEAVKAAVDPSTV 460
Query: 467 -LFGAAIDA----SRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGP 521
+F DA S I+ +G E + D L +P V V +
Sbjct: 461 VVFAENPDAEFVKSGGFSYAIVAVGEHPYTETKG-DNLNLTIPEPGLSTVQAVCGGVRCA 519
Query: 522 TILVLMSGGPIDVA--FAKNDPRIAAIIWAGYPGQAGGTAIADILFG 566
T+L+ SG P+ V A +D +AA W PG G + D LFG
Sbjct: 520 TVLI--SGRPVVVQPLLAASDALVAA--W--LPGSE-GQGVTDALFG 559
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 157/587 (26%), Positives = 246/587 (41%), Gaps = 106/587 (18%)
Query: 48 PIPQRVNDLIGRLSLQEKVKL---------------------LISGAAAVPRLGIKGYEW 86
P+ RV DL+GR++L EK+ L+SG +VPR G EW
Sbjct: 11 PVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKGATAKEW 70
Query: 87 WSEALHGVSNVGPGTKFG-------------GDFPGATSFPQVITTASSFNATLWEAIGR 133
+ + G T+ G + GAT FP + ++ + L + IG
Sbjct: 71 -QDMVDGFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDPYLVKRIGE 129
Query: 134 VVSDEARAMYNGGTAGLTY-WSPNVNIFRDPRWGRGQETPGED-----------PVLSGK 181
+ E RA G+ Y ++P + + RDPRWGR E+ ED P L G
Sbjct: 130 ATALEVRA------TGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGLQGD 183
Query: 182 YAASYVRGLQGSDGDRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFR 241
+ G+ G + KVAA KHF + VD + N + ++ +P
Sbjct: 184 VPKDFTSGMPFVAG-KNKVAACAKHFVG----DGGTVDGINENNTIINREGLMNIHMPAY 238
Query: 242 MCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHF 301
M+ V++VM SY+ NGV A+ +++ ++ + G+++SD + G+ T
Sbjct: 239 KNAMDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWE--GIDRITTPA 296
Query: 302 TSTPEEAAADAIRAGLDLDCGP-----FLGLHTESAVQRGLLSEIDINNALVNTLTVQMR 356
S + +I AGLD+ P F+ + T V G++ I++A+ L V+
Sbjct: 297 GSDYSYSVKASILAGLDMIMVPNKYQQFISILT-GHVNGGVIPMSRIDDAVTRILRVKFT 355
Query: 357 LGMFDGEPSSQPYGHLGPKDVCTPDHQELALEAARQGIVLLKN-----QGPSLPLSHIRH 411
+G+F+ P + P + + +H++LA EAAR+ +VLLKN P LPL +
Sbjct: 356 MGLFE-NPYADP---AMAEQLGKQEHRDLAREAARKSLVLLKNGKTSTDAPLLPLPK-KA 410
Query: 412 RTVAVIGPNSDVTVTMIGNYAGIAC-GYTTPLQG-IGRYARTIHQQGCKDVACADDQ--- 466
+ V G ++D G C G+T QG GR T+ + V A D
Sbjct: 411 PKILVAGSHAD--------NLGYQCGGWTIEWQGDTGR--TTVGTTILEAVKAAVDPSTV 460
Query: 467 -LFGAAIDA----SRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGP 521
+F DA S I+ +G E + D L +P V V +
Sbjct: 461 VVFAENPDAEFVKSGGFSYAIVAVGEHPYTETKG-DNLNLTIPEPGLSTVQAVCGGVRCA 519
Query: 522 TILVLMSGGPIDVA--FAKNDPRIAAIIWAGYPGQAGGTAIADILFG 566
T+L+ SG P+ V A +D +AA W PG G + D LFG
Sbjct: 520 TVLI--SGRPVVVQPLLAASDALVAA--W--LPGSE-GQGVTDALFG 559
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 118/412 (28%), Positives = 174/412 (42%), Gaps = 65/412 (15%)
Query: 53 VNDLIGRLSLQEKVKLLIS----GAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGDFP 108
V L+ L+ EK+ LL + + RLGI S+ +G+ GTKF F
Sbjct: 6 VEQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVRV-SDGPNGIR----GTKF---FD 57
Query: 109 GATS--FPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWG 166
G S FP AS+F+ L E G++ + E+ A G P N R P G
Sbjct: 58 GVPSGCFPNGTGLASTFDRDLLETAGKLXAKESIAKNAAVILG-----PTTNXQRGPLGG 112
Query: 167 RGQETPGEDPVLSGKYAASYVRGLQGSDGDRLKVAASCKHFTAYDLDNWNGVDRFHFNAK 226
RG E+ EDP L+G +S V+G QG +AA+ KHF DL++ RF N+
Sbjct: 113 RGFESFSEDPYLAGXATSSVVKGXQGEG-----IAATVKHFVCNDLED----QRFSSNSI 163
Query: 227 VSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIV 286
VS++ + + + PFR+ V + +YN+VNG +L +R EW+ +G +
Sbjct: 164 VSERALREIYLEPFRLAVKHANPVCIXTAYNKVNGEHCSQSKKLLIDILRDEWKWDGXLX 223
Query: 287 SDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCGPFLGLHTESAVQRGLLSEIDINNA 346
SD G Y A AI+ GLD++ T + V L S I
Sbjct: 224 SDW--FGTY------------TTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTE 269
Query: 347 LVNTLTVQM------------RLGMFDGEPSSQPYGHLGPKDVCTPDHQELALEAARQGI 394
V+ Q+ + G+ + P S T + +L + A I
Sbjct: 270 DVDDRVRQVLKXIKFVVDNLEKTGIVENGPESTSNN--------TKETSDLLRKIAADSI 321
Query: 395 VLLKNQGPSLPLSHIRHRTVAVIGPNSDVTVTMIGNYAGIACGY-TTPLQGI 445
VLLKN+ LPL + + VIGPN+ + G A Y +P +GI
Sbjct: 322 VLLKNKNNILPLK--KEDNIIVIGPNAKAKTSSGGGSASXNSYYVVSPYEGI 371
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 461 ACADDQLFGAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKG 520
A DD+ A + + + D +L++GL+ E E DR LP R ELV V A+
Sbjct: 557 AIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENXDLPKRTNELVRAVLKANPN 616
Query: 521 PTILVLMSGGPIDVAFAKNDPRIAAIIWAGYPGQAGGTAIADILFGTSNP 570
T++V SG P++ + ++ A++ A Y G G AIAD+L+G P
Sbjct: 617 -TVIVNQSGTPVEFPWLED---ANALVQAWYGGNELGNAIADVLYGDVVP 662
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution.
pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution
Length = 713
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 124/497 (24%), Positives = 207/497 (41%), Gaps = 78/497 (15%)
Query: 109 GATSFPQVITTASSFNATLWEAIGRVVSDEARA----MYNGGTAGLTYWSPNVNIFRDPR 164
G+T+F + AS+++ L G+ + +E +A + G AG + + P+
Sbjct: 71 GSTAFTPGVQAASTWDVNLIRERGQFIGEEVKASGIHVILGPVAGP--------LGKTPQ 122
Query: 165 WGRGQETPGEDPVLSGKYAASYVRGLQGSDGDRLKVAASCKHFTAYDLDNWNGVDRFHFN 224
GR E G DP L+G + G+Q + V A+ KH+ + N ++R +
Sbjct: 123 GGRNWEGFGVDPYLTGIAMGQTINGIQ-----SVGVQATAKHY----ILNEQELNRETIS 173
Query: 225 AKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGY 284
+ + + + + PF V + VASVMCSYN+VN C D L+ ++ + GY
Sbjct: 174 SNPDDRTLHELYTWPFADAV-QANVASVMCSYNKVNTTWACEDQYTLQTVLKDQLGFPGY 232
Query: 285 IVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCGPFL-GLHTESAVQRGLLSEIDI 343
+++D ++ QH T + D G D + L G +AV + +
Sbjct: 233 VMTD-------WNAQHTTVQSANSGLDMSMPGTDFNGNNRLWGPALTNAVNSNQVPTSRV 285
Query: 344 NNALVNTLTVQMRLGMFDGEPSSQPYGHLGPKDVCTPDHQELALEAARQGIVLLKNQGPS 403
++ + L G Y +H+ AR GIVLLKN
Sbjct: 286 DDMVTRILAAWYLTGQ-----DQAGYPSFNISRNVQGNHKTNVRAIARDGIVLLKNDANI 340
Query: 404 LPLSHIRHRTVAVIGPNSDVTVTMIGNYA----------------GIACG--------YT 439
LPL + ++AV+G + +IGN+A G+ G +
Sbjct: 341 LPLK--KPASIAVVG-----SAAIIGNHARNSPSCNDKGCDDGALGMGWGSGAVNYPYFV 393
Query: 440 TPLQGIGRYARTIHQQGCK-DVACADDQLFGAAIDASRQADATILVMGLDQ-----SIEA 493
P I A + QG + ++ D+ GA+ A+R D I+ + D ++E
Sbjct: 394 APYDAINTRASS---QGTQVTLSNTDNTSSGAS--AARGKDVAIVFITADSGEGYITVEG 448
Query: 494 EALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGPIDVAFAKNDPRIAAIIWAGYPG 553
A DR L LV V+ A+ I+V+ S G I + P++ A++WAG P
Sbjct: 449 NAGDRNNLDPWHNGNALVQAVAGANSN-VIVVVHSVGAIILEQILALPQVKAVVWAGLPS 507
Query: 554 QAGGTAIADILFGTSNP 570
Q G A+ D+L+G +P
Sbjct: 508 QESGNALVDVLWGDVSP 524
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
Length = 714
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 124/497 (24%), Positives = 207/497 (41%), Gaps = 78/497 (15%)
Query: 109 GATSFPQVITTASSFNATLWEAIGRVVSDEARA----MYNGGTAGLTYWSPNVNIFRDPR 164
G+T+F + AS+++ L G+ + +E +A + G AG + + P+
Sbjct: 72 GSTAFTPGVQAASTWDVNLIRERGQFIGEEVKASGIHVILGPVAGP--------LGKTPQ 123
Query: 165 WGRGQETPGEDPVLSGKYAASYVRGLQGSDGDRLKVAASCKHFTAYDLDNWNGVDRFHFN 224
GR E G DP L+G + G+Q + V A+ KH+ + N ++R +
Sbjct: 124 GGRNWEGFGVDPYLTGIAMGQTINGIQ-----SVGVQATAKHY----ILNEQELNRETIS 174
Query: 225 AKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGY 284
+ + + + + PF V + VASVMCSYN+VN C D L+ ++ + GY
Sbjct: 175 SNPDDRTLHELYTWPFADAV-QANVASVMCSYNKVNTTWACEDQYTLQTVLKDQLGFPGY 233
Query: 285 IVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCGPFL-GLHTESAVQRGLLSEIDI 343
+++D ++ QH T + D G D + L G +AV + +
Sbjct: 234 VMTD-------WNAQHTTVQSANSGLDMSMPGTDFNGNNRLWGPALTNAVNSNQVPTSRV 286
Query: 344 NNALVNTLTVQMRLGMFDGEPSSQPYGHLGPKDVCTPDHQELALEAARQGIVLLKNQGPS 403
++ + L G Y +H+ AR GIVLLKN
Sbjct: 287 DDMVTRILAAWYLTGQ-----DQAGYPSFNISRNVQGNHKTNVRAIARDGIVLLKNDANI 341
Query: 404 LPLSHIRHRTVAVIGPNSDVTVTMIGNYA----------------GIACG--------YT 439
LPL + ++AV+G + +IGN+A G+ G +
Sbjct: 342 LPLK--KPASIAVVG-----SAAIIGNHARNSPSCNDKGCDDGALGMGWGSGAVNYPYFV 394
Query: 440 TPLQGIGRYARTIHQQGCK-DVACADDQLFGAAIDASRQADATILVMGLDQ-----SIEA 493
P I A + QG + ++ D+ GA+ A+R D I+ + D ++E
Sbjct: 395 APYDAINTRASS---QGTQVTLSNTDNTSSGAS--AARGKDVAIVFITADSGEGYITVEG 449
Query: 494 EALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGPIDVAFAKNDPRIAAIIWAGYPG 553
A DR L LV V+ A+ I+V+ S G I + P++ A++WAG P
Sbjct: 450 NAGDRNNLDPWHNGNALVQAVAGANSN-VIVVVHSVGAIILEQILALPQVKAVVWAGLPS 508
Query: 554 QAGGTAIADILFGTSNP 570
Q G A+ D+L+G +P
Sbjct: 509 QESGNALVDVLWGDVSP 525
>pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3BMX|B Chain B, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3NVD|A Chain A, Structure Of Ybbd In Complex With Pugnac
pdb|3NVD|B Chain B, Structure Of Ybbd In Complex With Pugnac
Length = 642
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/370 (21%), Positives = 149/370 (40%), Gaps = 66/370 (17%)
Query: 94 VSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGL-TY 152
V+ +G GT +FPG + + +++ G ++ E A+ G+ T
Sbjct: 129 VTRLGEGT----NFPGNMALGAARSRINAYQT------GSIIGKELSAL------GINTD 172
Query: 153 WSPNVNIFRDP-RWGRGQETPGEDPVLSGKYAASYVRGLQGSDGDRLKVAASCKHFTAY- 210
+SP V+I +P G + + L+ + ++GLQ D +A++ KHF +
Sbjct: 173 FSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQRQD-----IASALKHFPGHG 227
Query: 211 --DLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNG------- 261
D+D+ G+ ++ + + PF+ + G VM ++ Q
Sbjct: 228 DTDVDSHYGLPLVSH----GQERLREVELYPFQKAIDAG-ADMVMTAHVQFPAFDDTTYK 282
Query: 262 ---------VPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADA 312
VP ++ +R E NG IV+D ++ D HF EEA A
Sbjct: 283 SKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTDALNMKAIAD--HFGQ--EEAVVMA 338
Query: 313 IRAGLDLDCGP--FLGLHTE-----------SAVQRGLLSEIDINNALVNTLTVQMRLGM 359
++AG+D+ P L E AV+ G + E INN++ ++++++ GM
Sbjct: 339 VKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKRGM 398
Query: 360 FDGEPSSQPYGHLGPKDVCTPDHQELALEA--ARQGIVLLKNQGPSLPLSHIRHRTVAVI 417
+ S + Q L E A + + +LKN+ +LP + + ++
Sbjct: 399 YPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRILIV 458
Query: 418 GPNSDVTVTM 427
P + T ++
Sbjct: 459 APYEEQTASI 468
>pdb|4GYJ|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYJ|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYK|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
pdb|4GYK|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
Length = 648
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 79/370 (21%), Positives = 152/370 (41%), Gaps = 66/370 (17%)
Query: 94 VSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGL-TY 152
V+ +G GT +FPG + + +++ G ++ E A+ G+ T
Sbjct: 133 VTRLGEGT----NFPGNMALGAARSRINAYQT------GSIIGKELSAL------GINTD 176
Query: 153 WSPNVNIFRDP-RWGRGQETPGEDPVLSGKYAASYVRGLQGSDGDRLKVAASCKHFTAY- 210
+SP V+I +P G + + L+ + ++GLQ D +A++ KHF +
Sbjct: 177 FSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQRQD-----IASALKHFPGHG 231
Query: 211 --DLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQ---------- 258
D+D+ G+ ++ + + PF+ + G VM ++ Q
Sbjct: 232 DTDVDSHYGLPLVSH----GQERLREVELYPFQKAIDAG-ADMVMTAHVQFPAFDDTTYK 286
Query: 259 --VNG----VPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADA 312
++G VP ++ +R E NG IV++ ++ D HF EEA A
Sbjct: 287 SKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTNALNMKAIAD--HFGQ--EEAVVMA 342
Query: 313 IRAGLDLDCGP--FLGLHTE-----------SAVQRGLLSEIDINNALVNTLTVQMRLGM 359
++AG+D+ P L E AV+ G + E INN++ ++++++ GM
Sbjct: 343 VKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKRGM 402
Query: 360 FDGEPSSQPYGHLGPKDVCTPDHQELALEA--ARQGIVLLKNQGPSLPLSHIRHRTVAVI 417
+ S + Q L E A + + +LKN+ +LP + + ++
Sbjct: 403 YPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRILIV 462
Query: 418 GPNSDVTVTM 427
P + T ++
Sbjct: 463 APYEEQTASI 472
>pdb|3LK6|A Chain A, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|B Chain B, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|C Chain C, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|D Chain D, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
Length = 616
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 79/370 (21%), Positives = 152/370 (41%), Gaps = 66/370 (17%)
Query: 94 VSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGL-TY 152
V+ +G GT +FPG + + +++ G ++ E A+ G+ T
Sbjct: 103 VTRLGEGT----NFPGNMALGAARSRINAYQT------GSIIGKELSAL------GINTD 146
Query: 153 WSPNVNIFRDP-RWGRGQETPGEDPVLSGKYAASYVRGLQGSDGDRLKVAASCKHFTAY- 210
+SP V+I +P G + + L+ + ++GLQ D +A++ KHF +
Sbjct: 147 FSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQRQD-----IASALKHFPGHG 201
Query: 211 --DLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQ---------- 258
D+D+ G+ ++ + + PF+ + G VM ++ Q
Sbjct: 202 DTDVDSHYGLPLVSH----GQERLREVELYPFQKAIDAG-ADMVMTAHVQFPAFDDTTYK 256
Query: 259 --VNG----VPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADA 312
++G VP ++ +R E NG IV++ ++ D HF EEA A
Sbjct: 257 SKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTNALNMKAIAD--HFGQ--EEAVVMA 312
Query: 313 IRAGLDLDCGP--FLGLHTE-----------SAVQRGLLSEIDINNALVNTLTVQMRLGM 359
++AG+D+ P L E AV+ G + E INN++ ++++++ GM
Sbjct: 313 VKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKRGM 372
Query: 360 FDGEPSSQPYGHLGPKDVCTPDHQELALEA--ARQGIVLLKNQGPSLPLSHIRHRTVAVI 417
+ S + Q L E A + + +LKN+ +LP + + ++
Sbjct: 373 YPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRILIV 432
Query: 418 GPNSDVTVTM 427
P + T ++
Sbjct: 433 APYEEQTASI 442
>pdb|3TEV|A Chain A, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
pdb|3TEV|B Chain B, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
Length = 351
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 197 RLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIE-DTFDV-PFRMCVMEG-KVASVM 253
R VA KHF + + D +VSK E D ++ PFR + E + +
Sbjct: 170 REGVAPCAKHFPGHGDTHQ---DSHLALPRVSKSRAELDAGELAPFRALLPETPAIXTAH 226
Query: 254 CSYNQVNGV-PTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADA 312
Y+ ++ P P IL +R EW +G IV+ DS G ++ EAA A
Sbjct: 227 IVYDALDAEHPATLSPRILTGLLREEWGYDGVIVT--DSXGXQAIDANYGRG--EAAVRA 282
Query: 313 IRAGLDL 319
+RAG DL
Sbjct: 283 LRAGADL 289
>pdb|2ZKR|RR Chain r, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 184
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 249 VASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEA 308
V S++ + QVN P + +RT R R+N Y+ S C + + + PEE
Sbjct: 109 VDSLVIEHIQVNKAP-----KMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEE 163
Query: 309 AA 310
A
Sbjct: 164 VA 165
>pdb|2HVQ|A Chain A, Structure Of Adenylated Full-length T4 Rna Ligase 2
Length = 335
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 338 LSEIDINNALVNTLTVQMRLGMFDGEPSSQPYGHLGPKD---VCTPDHQELALEAARQGI 394
LSE D N LV L + L + S G +GPKD V Q++ E +R+GI
Sbjct: 248 LSEAD--NKLVGILACYVTLNRVNNVISK--IGEIGPKDFGKVMGLTVQDILEETSREGI 303
Query: 395 VLLKNQGPSLPLSHIRHRTVAVIGP 419
L + PSL + V+ P
Sbjct: 304 TLTQADNPSLIKKELVKMVQDVLRP 328
>pdb|2HVR|A Chain A, Structure Of T4 Rna Ligase 2 With Nicked 5'-Adenylated
Nucleic Acid Duplex Containing A 3'-Deoxyribonucleotide
At The Nick
pdb|2HVR|B Chain B, Structure Of T4 Rna Ligase 2 With Nicked 5'-Adenylated
Nucleic Acid Duplex Containing A 3'-Deoxyribonucleotide
At The Nick
pdb|2HVS|A Chain A, Structure Of T4 Rna Ligase 2 With Nicked 5'-Adenylated
Nucleic Acid Duplex Containing A 2'-Deoxyribonucleotide
At The Nick
pdb|2HVS|B Chain B, Structure Of T4 Rna Ligase 2 With Nicked 5'-Adenylated
Nucleic Acid Duplex Containing A 2'-Deoxyribonucleotide
At The Nick
Length = 335
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 338 LSEIDINNALVNTLTVQMRLGMFDGEPSSQPYGHLGPKD---VCTPDHQELALEAARQGI 394
LSE D N LV L + L + S G +GPKD V Q++ E +R+GI
Sbjct: 248 LSEAD--NKLVGILACYVTLNRVNNVISK--IGEIGPKDFGKVMGLTVQDILEETSREGI 303
Query: 395 VLLKNQGPSLPLSHIRHRTVAVIGP 419
L + PSL + V+ P
Sbjct: 304 TLTQADNPSLIKKELVKMVQDVLRP 328
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 64 EKVKLLISGAAAVPRLGIKGYEWWSEALHGVSNVGPGTKF 103
EK +++++G A+ +G ++W + G + +GP T+F
Sbjct: 5 EKKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRF 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,351,651
Number of Sequences: 62578
Number of extensions: 735484
Number of successful extensions: 1666
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1592
Number of HSP's gapped (non-prelim): 33
length of query: 575
length of database: 14,973,337
effective HSP length: 104
effective length of query: 471
effective length of database: 8,465,225
effective search space: 3987120975
effective search space used: 3987120975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)