Query 008175
Match_columns 575
No_of_seqs 240 out of 1736
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 20:26:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008175.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008175hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03080 Probable beta-xylosid 100.0 7E-120 1E-124 1023.8 56.4 566 6-574 8-584 (779)
2 PRK15098 beta-D-glucoside gluc 100.0 3E-101 6E-106 875.0 51.2 496 46-574 31-595 (765)
3 COG1472 BglX Beta-glucosidase- 100.0 1E-65 2.3E-70 540.8 24.1 311 77-432 56-372 (397)
4 PF00933 Glyco_hydro_3: Glycos 100.0 8.2E-62 1.8E-66 498.9 19.0 265 61-353 1-299 (299)
5 PRK05337 beta-hexosaminidase; 100.0 2.6E-50 5.6E-55 416.5 21.7 243 80-357 54-309 (337)
6 PF01915 Glyco_hydro_3_C: Glyc 99.9 1.6E-27 3.5E-32 235.7 12.9 172 394-574 1-184 (227)
7 COG0486 ThdF Predicted GTPase 85.1 30 0.00065 37.5 15.2 96 243-357 60-171 (454)
8 COG1160 Predicted GTPases [Gen 65.2 17 0.00037 39.3 6.8 47 469-528 75-121 (444)
9 PRK00286 xseA exodeoxyribonucl 52.2 88 0.0019 34.0 9.9 49 465-523 178-228 (438)
10 TIGR01759 MalateDH-SF1 malate 50.6 14 0.0003 38.6 3.2 57 473-535 75-135 (323)
11 PRK13533 7-cyano-7-deazaguanin 49.5 21 0.00044 39.5 4.4 47 275-322 75-121 (487)
12 PRK06096 molybdenum transport 48.4 1.4E+02 0.0031 30.5 10.0 31 179-210 106-136 (284)
13 TIGR01756 LDH_protist lactate 46.9 15 0.00032 38.2 2.7 57 473-535 56-116 (313)
14 PF06858 NOG1: Nucleolar GTP-b 44.9 72 0.0016 24.4 5.3 24 504-527 31-55 (58)
15 cd00938 HisRS_RNA HisRS_RNA bi 44.9 55 0.0012 23.6 4.4 30 329-358 13-42 (45)
16 TIGR00237 xseA exodeoxyribonuc 43.8 1.6E+02 0.0035 32.0 10.2 48 466-523 173-223 (432)
17 COG0039 Mdh Malate/lactate deh 43.3 22 0.00047 36.9 3.2 58 473-535 65-124 (313)
18 TIGR01334 modD putative molybd 42.9 2E+02 0.0043 29.4 10.0 31 179-210 105-135 (277)
19 cd01857 HSR1_MMR1 HSR1/MMR1. 41.0 57 0.0012 29.1 5.3 18 469-486 3-20 (141)
20 PRK05442 malate dehydrogenase; 40.3 19 0.00042 37.6 2.3 57 473-535 76-136 (326)
21 PLN00135 malate dehydrogenase 40.0 26 0.00056 36.3 3.2 57 473-535 54-114 (309)
22 TIGR01757 Malate-DH_plant mala 37.7 20 0.00043 38.4 2.0 57 473-535 116-176 (387)
23 PF00056 Ldh_1_N: lactate/mala 37.3 10 0.00022 34.4 -0.3 54 474-534 66-123 (141)
24 cd01338 MDH_choloroplast_like 37.3 29 0.00063 36.2 3.1 57 473-535 74-134 (322)
25 cd00704 MDH Malate dehydrogena 37.2 30 0.00066 36.1 3.2 56 473-534 72-131 (323)
26 PF07172 GRP: Glycine rich pro 36.7 31 0.00067 29.1 2.6 19 1-19 1-22 (95)
27 COG1159 Era GTPase [General fu 36.4 1.7E+02 0.0037 30.1 8.2 46 469-527 77-122 (298)
28 PF00009 GTP_EFTU: Elongation 35.2 1.6E+02 0.0035 27.5 7.7 51 465-528 81-131 (188)
29 cd00300 LDH_like L-lactate deh 34.3 30 0.00064 35.7 2.6 58 473-535 62-121 (300)
30 PF10662 PduV-EutP: Ethanolami 34.2 3.5E+02 0.0075 24.7 9.1 80 468-564 54-141 (143)
31 PF02421 FeoB_N: Ferrous iron 33.5 1.1E+02 0.0023 28.4 5.9 38 475-527 76-113 (156)
32 PRK05086 malate dehydrogenase; 33.0 34 0.00075 35.4 2.8 56 473-534 65-123 (312)
33 PLN00112 malate dehydrogenase 31.3 29 0.00063 37.8 2.0 57 473-535 172-232 (444)
34 TIGR01772 MDH_euk_gproteo mala 30.9 52 0.0011 34.2 3.7 55 473-534 63-121 (312)
35 PRK13534 7-cyano-7-deazaguanin 30.5 75 0.0016 36.5 5.1 47 275-322 74-120 (639)
36 cd01337 MDH_glyoxysomal_mitoch 30.1 44 0.00095 34.7 3.0 55 473-534 64-122 (310)
37 cd01336 MDH_cytoplasmic_cytoso 29.5 46 0.00099 34.8 3.0 57 473-535 74-134 (325)
38 PF09851 SHOCT: Short C-termin 29.5 1.1E+02 0.0023 20.0 3.7 25 327-351 6-30 (31)
39 PF02601 Exonuc_VII_L: Exonucl 29.3 2.7E+02 0.0059 28.6 8.9 49 465-523 57-111 (319)
40 PLN02602 lactate dehydrogenase 29.3 43 0.00093 35.4 2.8 55 474-535 102-160 (350)
41 TIGR02836 spore_IV_A stage IV 28.7 2.2E+02 0.0047 31.1 7.8 52 476-533 143-194 (492)
42 COG2003 RadC DNA repair protei 27.4 49 0.0011 32.5 2.6 99 175-292 105-210 (224)
43 PF01926 MMR_HSR1: 50S ribosom 27.2 1.3E+02 0.0028 25.4 5.1 46 468-527 70-115 (116)
44 COG1182 AcpD Acyl carrier prot 26.7 2.1E+02 0.0046 27.6 6.7 54 469-533 79-147 (202)
45 TIGR01763 MalateDH_bact malate 26.4 49 0.0011 34.2 2.6 54 475-535 67-124 (305)
46 PF03808 Glyco_tran_WecB: Glyc 26.4 2.8E+02 0.0061 25.8 7.6 50 466-534 88-139 (172)
47 COG0157 NadC Nicotinate-nucleo 26.2 70 0.0015 32.5 3.5 111 179-335 109-228 (280)
48 PF10087 DUF2325: Uncharacteri 26.1 1.8E+02 0.0038 24.2 5.6 40 471-525 42-81 (97)
49 TIGR01771 L-LDH-NAD L-lactate 25.8 47 0.001 34.2 2.3 55 473-534 60-118 (299)
50 PRK13556 azoreductase; Provisi 25.5 2.2E+02 0.0048 27.3 6.9 54 468-532 80-148 (208)
51 PF03032 Brevenin: Brevenin/es 25.5 33 0.00071 24.9 0.8 16 3-18 6-21 (46)
52 TIGR01758 MDH_euk_cyt malate d 25.4 58 0.0012 34.0 2.9 57 473-535 71-131 (324)
53 cd05294 LDH-like_MDH_nadp A la 24.9 70 0.0015 33.1 3.4 56 474-534 69-126 (309)
54 PF09373 PMBR: Pseudomurein-bi 23.8 1E+02 0.0023 20.4 2.9 26 335-360 2-27 (33)
55 cd05290 LDH_3 A subgroup of L- 23.4 51 0.0011 34.1 2.1 58 473-535 64-125 (307)
56 CHL00139 rpl18 ribosomal prote 23.1 1.7E+02 0.0037 25.4 4.9 24 119-142 54-77 (109)
57 PRK01008 queuine tRNA-ribosylt 22.6 1.4E+02 0.003 31.9 5.1 75 275-356 76-186 (372)
58 cd05291 HicDH_like L-2-hydroxy 21.9 67 0.0015 33.1 2.6 55 474-535 65-123 (306)
59 PRK13555 azoreductase; Provisi 21.9 2.6E+02 0.0056 27.1 6.5 54 468-532 80-148 (208)
60 cd06557 KPHMT-like Ketopantoat 21.7 4.9E+02 0.011 26.1 8.6 28 309-336 96-127 (254)
61 cd01858 NGP_1 NGP-1. Autoanti 21.2 1.7E+02 0.0037 26.4 5.0 14 473-486 4-17 (157)
62 KOG4005 Transcription factor X 20.9 1.7E+02 0.0037 28.8 4.8 20 48-67 52-71 (292)
63 PRK05848 nicotinate-nucleotide 20.5 7.3E+02 0.016 25.2 9.6 29 179-210 103-131 (273)
64 PRK00066 ldh L-lactate dehydro 20.5 72 0.0016 33.1 2.5 55 473-534 69-127 (315)
No 1
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=6.6e-120 Score=1023.81 Aligned_cols=566 Identities=52% Similarity=0.987 Sum_probs=506.7
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhcCCHHHHHHHhhCCCCCCCCCCCCchh
Q 008175 6 AFFFLGLILLSASSSGLAAREPFACDPKDATTRTLPFCQVSLPIPQRVNDLIGRLSLQEKVKLLISGAAAVPRLGIKGYE 85 (575)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~mTleEkv~ql~~~~~~~~~~gip~~~ 85 (575)
++.++++.+.+++...+.++++.+|.+ ...+.+||||++++.++|+++||++||+|||++||.....+++|+|||.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~c~~--~~~~~~~~~~~~~~~~~r~~~Ll~~mTleEKv~~l~~~~~~vpRlGIP~~~ 85 (779)
T PLN03080 8 LFLLLFLLALGATFKAADAHPQFPCKP--PTFSAYPFCNASLPIPARARSLVSLLTLDEKIAQLSNTAAGVPRLGIPPYE 85 (779)
T ss_pred HHHHHHHHhcchhcccccCCCCcCCCC--ccccCCCccCCCCCHHHHHHHHHHhcCHHHHHHHhcCCCCCCCcCCCCccc
Confidence 344455555555555566677888973 567779999999999999999999999999999998888899999999999
Q ss_pred hhhcccccccccCCCcccC-CCCCCcccccchhhhhccCCHHHHHHHHHHHHHHHHHhhcCCCCcceEeccccccCCCCC
Q 008175 86 WWSEALHGVSNVGPGTKFG-GDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLTYWSPNVNIFRDPR 164 (575)
Q Consensus 86 ~~~~~~~g~~~~g~~~~~~-~~~~~~t~fP~~~~l~at~d~~l~~~~g~~~g~E~~a~~~~g~~Gi~~~aPv~di~~~p~ 164 (575)
|++|++||++..++|+++. +.+.++|.||.++++|||||+++++++|+++|+|+|+++|.+..|+++|+|++||+|||+
T Consensus 86 ~~~d~~hGv~~~~~g~~~~~g~~~~aT~FP~~i~laAt~d~~L~~~~g~~ig~E~ra~g~~~~~G~~~~aP~vdi~rdPr 165 (779)
T PLN03080 86 WWSESLHGLADNGPGVSFNSGPVSAATSFPQVILSAASFNRSLWRAIGSAIAVEARAMYNAGQAGLTFWAPNINIFRDPR 165 (779)
T ss_pred eecccccccccCCCccccccCCCCCceECchHHhhhhcCCHHHHHHHHHHHHHHHHhhccccccCcceeecccccccCCC
Confidence 9999999998888887774 445679999999999999999999999999999999997665557888999999999999
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHHHhcCC---------CCccceEEeecccccccCCCCCCCCcccccccCCHHHHHhh
Q 008175 165 WGRGQETPGEDPVLSGKYAASYVRGLQGSD---------GDRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDT 235 (575)
Q Consensus 165 ~gr~~rsfgeDp~~v~~~a~a~v~G~q~~~---------g~~~~v~a~~KHFpg~g~~~~~~~~~~~~~~~~~~~~l~e~ 235 (575)
|||++|||||||+++++|+.|||+|+|+.+ .++.+|++|+||||||+++.+++..|...++.+++++|+|+
T Consensus 166 wGR~~EtfGEDP~lv~~~a~a~V~GlQ~~~~~~~~~~~~~~~~~V~a~~KHF~g~~~e~~~~~~r~~~~~~v~~~~L~e~ 245 (779)
T PLN03080 166 WGRGQETPGEDPAVASAYSVEFVKGFQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQDMEDT 245 (779)
T ss_pred cCccccCcCCCHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEECCeeeCCCccccCCccccCccCccCHHHHHhh
Confidence 999999999999999999999999999841 12345999999999999987777778888889999999999
Q ss_pred cCHHHHHHHHcCCcceeeecccccCCcccccCHHHHHHHhhhhcCCCcEEecCcchhhhcccCccccCCHHHHHHHHHHc
Q 008175 236 FDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRA 315 (575)
Q Consensus 236 ~l~pF~~ai~~g~~~~vM~sy~~~~g~pa~~s~~~l~~~LR~~~gf~G~visD~~~m~~~~~~~~~~~~~~~a~~~a~~A 315 (575)
||+||+.+|++|.+++||||||++||+|+|.|+++|+. ||+||||+|+|||||++|..+...+++..+.++++++|++|
T Consensus 246 yl~PF~~ai~~g~~~~VM~sYn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~~~~~~~~~~~~~~ea~~~Al~A 324 (779)
T PLN03080 246 YQPPFKSCIQEGKASCLMCSYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVATIFEYQTYTKSPEDAVADVLKA 324 (779)
T ss_pred hhHHHHHHHHhcCCeEEEeCCcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHHHhhhcccccCCHHHHHHHHHHc
Confidence 99999999999987799999999999999999999986 99999999999999999999987777777889999999999
Q ss_pred CCCCCCCcchhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHhCeE
Q 008175 316 GLDLDCGPFLGLHTESAVQRGLLSEIDINNALVNTLTVQMRLGMFDGEPSSQPYGHLGPKDVCTPDHQELALEAARQGIV 395 (575)
Q Consensus 316 G~D~~l~~~~~~~l~~av~~g~i~~~~id~av~ril~~k~~~gl~~~~~~~~~~~~~~~~~~~~~~h~~la~e~a~~siv 395 (575)
|+||+|...+...+.+||++|++++++||+||+|||++|+++|+|++++...+|.+.....+.+++|+++++|+|++|||
T Consensus 325 G~Dl~~~~~~~~~l~~av~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~~~~v~~~~h~~lA~eaA~~siV 404 (779)
T PLN03080 325 GMDINCGSYMLRHTQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIV 404 (779)
T ss_pred CCCcccCchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCcccccccccccccCCHHHHHHHHHHHHhCEE
Confidence 99999987777899999999999999999999999999999999995443334555445678899999999999999999
Q ss_pred EeecCCCCCCCCCCCCceEEEECcCCCccccccCccccCCCccCCHHHHHHhhh-ceeeecCCCccCCCChhHHHHHHHH
Q 008175 396 LLKNQGPSLPLSHIRHRTVAVIGPNSDVTVTMIGNYAGIACGYTTPLQGIGRYA-RTIHQQGCKDVACADDQLFGAAIDA 474 (575)
Q Consensus 396 LLKN~~~~LPL~~~~~~kI~viG~~a~~~~~~~g~~~g~~~~~~t~~~~l~~~~-~~~~~~g~~~~~~~~~~~~~~a~~~ 474 (575)
||||++++|||++.+.+||+|+||+++....++|+|++.+++..+++++|+++. .+.|..||....|.+...+++++++
T Consensus 405 LLKN~~~~LPL~~~~~~~IaViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~y~~g~~~~~~~~~~~~~~A~~~ 484 (779)
T PLN03080 405 LLKNDKKFLPLNKSEVSSLAIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAI 484 (779)
T ss_pred EEecCCCCCCCCCCCCCEEEEECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcceeccCccccccCchhhHHHHHHH
Confidence 999999999999765679999999999888778889888888899999999875 5778888865555556678899999
Q ss_pred hhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEecCCceeccccccCCCccEEEEccCCCh
Q 008175 475 SRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGPIDVAFAKNDPRIAAIIWAGYPGQ 554 (575)
Q Consensus 475 a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q~~li~~v~~~~~~pvIvVl~~g~P~~l~~~~~~~~v~ail~~~~~g~ 554 (575)
+++||++||++|.+...++|+.||.++.||..|.+||++|++++++|||||+++|+|++++|+.+.++|+||||+||||+
T Consensus 485 A~~aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv~l~~~~~~~~v~AIl~~~ypGq 564 (779)
T PLN03080 485 AKRADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGYPGE 564 (779)
T ss_pred hccCCEEEEEeCCCccccccCCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCceeeccchhccCCCCeEEEccCCcc
Confidence 99999999999998888999999999999999999999999767779999999999999999876678999999999999
Q ss_pred hHHHHHHHHHhcCCCCCccC
Q 008175 555 AGGTAIADILFGTSNPGLIM 574 (575)
Q Consensus 555 ~~g~AladvL~G~~nPsGkL 574 (575)
++|+|+||||||++||||||
T Consensus 565 egG~AiAdvLfG~vnPsGkL 584 (779)
T PLN03080 565 VGGQALAEIIFGDYNPGGRL 584 (779)
T ss_pred cchhhhHHHHcCCCCCCCcC
Confidence 99999999999999999998
No 2
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=2.9e-101 Score=875.03 Aligned_cols=496 Identities=30% Similarity=0.496 Sum_probs=422.7
Q ss_pred CCChHHHHHHHHhcCCHHHHHHHhhCCCCC--------------------------------------CCCCCCCchhhh
Q 008175 46 SLPIPQRVNDLIGRLSLQEKVKLLISGAAA--------------------------------------VPRLGIKGYEWW 87 (575)
Q Consensus 46 ~~~~~~~v~~ll~~mTleEkv~ql~~~~~~--------------------------------------~~~~gip~~~~~ 87 (575)
+.+.++|++++|++||+|||+|||++.... .+|+|||.+ +.
T Consensus 31 ~~~~~~~v~~ll~~MtleEKvgQl~~~~~~~~~~~~~~~~~i~~~~vGgv~n~~~~~~~~~lq~~~~~~~~~giP~l-i~ 109 (765)
T PRK15098 31 PEARDAFVTDLLKKMTLDEKIGQLRLISVGPDNPKEAIREMIKAGQVGAIFNTVTRQDIRAMQDQVMQLSRLKIPLF-FA 109 (765)
T ss_pred CcCHHHHHHHHHHcCCHHHHHhhhcccccCCCCchHHHHHHHHhCCcceEEcCcCHHHHHHHHHHHhhCCCCCCCee-EE
Confidence 347899999999999999999999974210 245566665 34
Q ss_pred hcccccccccCCCcccCCCCCCcccccchhhhhccCCHHHHHHHHHHHHHHHHHhhcCCCCcceE-eccccccCCCCCCC
Q 008175 88 SEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLTY-WSPNVNIFRDPRWG 166 (575)
Q Consensus 88 ~~~~~g~~~~g~~~~~~~~~~~~t~fP~~~~l~at~d~~l~~~~g~~~g~E~~a~~~~g~~Gi~~-~aPv~di~~~p~~g 166 (575)
.|+++| ..|.||+++++|||||+++++++|+++|+|+|++ |+|+ |+|++||+|||+||
T Consensus 110 ~D~e~G---------------~~t~fP~~~~laat~d~~l~~~~g~~~a~E~ra~------Gin~~laPv~Dv~r~p~~g 168 (765)
T PRK15098 110 YDVVHG---------------QRTVFPISLGLASSWDLDAVATVGRVSAYEAADD------GLNMTWAPMVDISRDPRWG 168 (765)
T ss_pred EeCCCC---------------ccccCChHHHHHHcCCHHHHHHHHHHHHHHHHHc------CCCEEeeCcccccCCCCcc
Confidence 454444 2588999999999999999999999999999999 9999 99999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHhcCCC-CccceEEeecccccccCCCCCCCCcccccccCCHHHHHhhcCHHHHHHHH
Q 008175 167 RGQETPGEDPVLSGKYAASYVRGLQGSDG-DRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVM 245 (575)
Q Consensus 167 r~~rsfgeDp~~v~~~a~a~v~G~q~~~g-~~~~v~a~~KHFpg~g~~~~~~~~~~~~~~~~~~~~l~e~~l~pF~~ai~ 245 (575)
|++|||||||++|++|+.|||+|+|+++. +..+|++|+|||||||..+. +|+...+.+++++|++.||+||+.+|+
T Consensus 169 r~~rsfgeDP~lv~~~~~a~v~GlQ~~~~~~~~gV~a~~KHFpG~g~~~~---~~~~~~~~~~~~~l~e~~l~PF~~ai~ 245 (765)
T PRK15098 169 RASEGFGEDTYLTSIMGKTMVKAMQGKSPADRYSVMTSVKHFALYGAVEG---GRDYNTVDMSPQRMFNDYLPPYKAGLD 245 (765)
T ss_pred ccccCcCCCHHHHHHHHHHHHHHHcCCCCCCCCCEEEECcEEeCCCCccc---CccCccCcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998620 22349999999999995432 233345678999999999999999999
Q ss_pred cCCcceeeecccccCCcccccCHHHHHHHhhhhcCCCcEEecCcchhhhcccCccccCCHHHHHHHHHHcCCCCCCCcc-
Q 008175 246 EGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCGPF- 324 (575)
Q Consensus 246 ~g~~~~vM~sy~~~~g~pa~~s~~~l~~~LR~~~gf~G~visD~~~m~~~~~~~~~~~~~~~a~~~a~~AG~D~~l~~~- 324 (575)
+|. ++|||||+.+||+|+|+|+++|+++||+||||+|+|||||++|..+.. |++..+..+++++|++||+||+|.+.
T Consensus 246 ag~-~~VM~sy~~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~a~~~l~~-~~~~~~~~ea~~~Al~AG~Dl~m~~~~ 323 (765)
T PRK15098 246 AGS-GGVMVALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIKELIK-HGVAADPEDAVRLALKSGIDMSMSDEY 323 (765)
T ss_pred hCC-CEEEecccCcCCEeccCCHHHHHHHHHHhcCCCcEEEecchhHHHHHh-cccCCCHHHHHHHHHHcCCCcccCchh
Confidence 885 599999999999999999999999999999999999999999998864 66666889999999999999998754
Q ss_pred hhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCC--CCC-CCCCCCCChhHHHHHHHHHHhCeEEeecCC
Q 008175 325 LGLHTESAVQRGLLSEIDINNALVNTLTVQMRLGMFDGEPSSQP--YGH-LGPKDVCTPDHQELALEAARQGIVLLKNQG 401 (575)
Q Consensus 325 ~~~~l~~av~~g~i~~~~id~av~ril~~k~~~gl~~~~~~~~~--~~~-~~~~~~~~~~h~~la~e~a~~sivLLKN~~ 401 (575)
+.+.+.+++++|.+++++||+||+|||++|+++|+|+ +|+... ... .....+.+++|++++++++++|||||||++
T Consensus 324 ~~~~l~~av~~G~i~~~~id~av~RIL~~k~~~glf~-~p~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~sivLLKN~~ 402 (765)
T PRK15098 324 YSKYLPGLVKSGKVTMAELDDAVRHVLNVKYDMGLFN-DPYSHLGPKESDPVDTNAESRLHRKEAREVARESLVLLKNRL 402 (765)
T ss_pred HHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHhCCCC-CCccccccccccccccccCCHHHHHHHHHHHHhcEEEEecCC
Confidence 3457999999999999999999999999999999998 442100 000 011234578999999999999999999999
Q ss_pred CCCCCCCCCCceEEEECcCCCccccccCccc--cCCCccCCHHHHHHhhh----ceeeecCCCccC--------------
Q 008175 402 PSLPLSHIRHRTVAVIGPNSDVTVTMIGNYA--GIACGYTTPLQGIGRYA----RTIHQQGCKDVA-------------- 461 (575)
Q Consensus 402 ~~LPL~~~~~~kI~viG~~a~~~~~~~g~~~--g~~~~~~t~~~~l~~~~----~~~~~~g~~~~~-------------- 461 (575)
++|||+++ +||+|+|+.++......|+|+ +.+++.+|++++|+++. .+.|..||....
T Consensus 403 ~~LPL~~~--~~IaviG~~a~~~~~~~G~~s~~~~~~~~vt~~~gl~~~~~~~~~v~y~~G~~~~~~~~~~~~~~~~~~~ 480 (765)
T PRK15098 403 ETLPLKKS--GTIAVVGPLADSQRDVMGSWSAAGVADQSVTVLQGIKNAVGDKAKVLYAKGANVTDDKGIIDFLNQYEEA 480 (765)
T ss_pred CCCCCCCC--CEEEEECCCcccccccCCCccccCccCCCCCHHHHHHHhhcCCceEEEecccccccCcccchhhhccccc
Confidence 99999854 599999999988765666664 45667899999999864 577888874211
Q ss_pred -----CCChhHHHHHHHHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEecCCceeccc
Q 008175 462 -----CADDQLFGAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGPIDVAF 536 (575)
Q Consensus 462 -----~~~~~~~~~a~~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q~~li~~v~~~~~~pvIvVl~~g~P~~l~~ 536 (575)
.+.+..+++++++++++|++||++|.+...++|+.||.++.||+.|.+||+++++ .++|||||+++|+||++.|
T Consensus 481 ~~~~~~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~~-~~~~vVvVl~~g~P~~l~~ 559 (765)
T PRK15098 481 VKVDPRSPQAMIDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKA-TGKPLVLVLMNGRPLALVK 559 (765)
T ss_pred cccccccchhhHHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHHHHHHHH-hCcCEEEEEeCCceeeccc
Confidence 0123467889999999999999999988889999999999999999999999986 4679999999999999998
Q ss_pred cccCCCccEEEEccCCChhHHHHHHHHHhcCCCCCccC
Q 008175 537 AKNDPRIAAIIWAGYPGQAGGTAIADILFGTSNPGLIM 574 (575)
Q Consensus 537 ~~~~~~v~ail~~~~~g~~~g~AladvL~G~~nPsGkL 574 (575)
+. ++++|||++|+||+++|+|+|+||||++||||||
T Consensus 560 ~~--~~v~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkL 595 (765)
T PRK15098 560 ED--QQADAILETWFAGTEGGNAIADVLFGDYNPSGKL 595 (765)
T ss_pred hh--hcCCeEEeecCCchhhhHHHHHHHcCCCCCCCCC
Confidence 74 5899999999999999999999999999999998
No 3
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-65 Score=540.83 Aligned_cols=311 Identities=32% Similarity=0.531 Sum_probs=263.2
Q ss_pred CCCCCCchhhhhcccccccccCCCcccCCCCCCcccccchhhhhccCCHHHHHHHHHHHHHHHHHhhcCCCCcceE-ecc
Q 008175 77 PRLGIKGYEWWSEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLTY-WSP 155 (575)
Q Consensus 77 ~~~gip~~~~~~~~~~g~~~~g~~~~~~~~~~~~t~fP~~~~l~at~d~~l~~~~g~~~g~E~~a~~~~g~~Gi~~-~aP 155 (575)
+|+++|.+ ...|+++|. .+....++|.||+++++|++||+++++++|+.+|+|+|++ |||+ |||
T Consensus 56 ~r~~ipll-i~~D~egG~--------v~r~~~~~t~fP~~~alaa~~~~~la~~~g~~~A~Elra~------Gin~~fAP 120 (397)
T COG1472 56 ARLGIPLL-IAIDQEGGR--------VQRLREGFTVFPAALALAATWDPELARKVGRVIAKELRAL------GINLDFAP 120 (397)
T ss_pred hccCCCeE-EEEecCCCe--------eeeccCCCCcCChhhhhhhcCCHHHHHHHHHHHHHHHHHc------CCCccccc
Confidence 46778877 344555443 2222125899999999999999999999999999999999 9999 999
Q ss_pred ccccCCCCCCCccCCC-CCCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccCCCCCCCCcccccccCCHHHHHh
Q 008175 156 NVNIFRDPRWGRGQET-PGEDPVLSGKYAASYVRGLQGSDGDRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIED 234 (575)
Q Consensus 156 v~di~~~p~~gr~~rs-fgeDp~~v~~~a~a~v~G~q~~~g~~~~v~a~~KHFpg~g~~~~~~~~~~~~~~~~~~~~l~e 234 (575)
|+||.|||+|||.+++ |||||++|+.|+.|||+|||+. | |++|+|||||||..+.+ ++...+.++++.|+|
T Consensus 121 vlDv~~~p~~~ri~ersfgeDP~lv~~l~~a~i~Glq~~-g----v~at~KHFpGhG~~~~d---sh~~~~~v~~~~L~e 192 (397)
T COG1472 121 VLDVARDPRWGRIGERSFGEDPELVALLAAAFIKGLQGA-G----VAATIKHFPGHGAVEGD---SHYGLLPIDPRALRE 192 (397)
T ss_pred eeecccCCCcCccccccCCCCHHHHHHHHHHHHHHHhhC-C----ceeeeccccCCCCCcCC---cccccCCCChHHHHH
Confidence 9999999999976665 9999999999999999999999 9 99999999999865422 222225689999999
Q ss_pred hcCHHHHHHHHcCC--cceeeecccccCCcccccCHHHHHHHhhhhcCCCcEEecCcchhhhcccCccccCCHHHHHHHH
Q 008175 235 TFDVPFRMCVMEGK--VASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADA 312 (575)
Q Consensus 235 ~~l~pF~~ai~~g~--~~~vM~sy~~~~g~pa~~s~~~l~~~LR~~~gf~G~visD~~~m~~~~~~~~~~~~~~~a~~~a 312 (575)
.|+.||+.+++.+. +.++|++|+.+|+.|||+|+++|+++||++|||+|+|||||++|.++...+ .+..+++.++
T Consensus 193 ~~~~~f~~~~~~~~~~~mtahv~y~~id~~Pat~s~~ll~diLR~~~GF~G~ViSD~~~m~~~~~~~---g~~~d~~~~a 269 (397)
T COG1472 193 LYLPPFQPAIALGDDAAMTAHVAYPKIDGTPATLSRKLLTDILRDEWGFDGVVISDDLSMKAIAAAH---GSAADRAEAA 269 (397)
T ss_pred hhccchHHHHHhccccceEEeeeccCCCCCcccCCHHHHHHHHHhccCCCeEEEeecchhHHHHHhc---cCHHHHHHHH
Confidence 99999999999995 568889999999999999999999999999999999999999999877533 3567888889
Q ss_pred HHcCCCCCCCcc-hh-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHH
Q 008175 313 IRAGLDLDCGPF-LG-LHTESAVQRGLLSEIDINNALVNTLTVQMRLGMFDGEPSSQPYGHLGPKDVCTPDHQELALEAA 390 (575)
Q Consensus 313 ~~AG~D~~l~~~-~~-~~l~~av~~g~i~~~~id~av~ril~~k~~~gl~~~~~~~~~~~~~~~~~~~~~~h~~la~e~a 390 (575)
++|||||+|... .. ..+..+...+ +++++++++++|||++|+++|+|+ +|+ .+ +|++++++++
T Consensus 270 l~AG~Di~l~~~~~~~~~~~~~~~~~-~~~~~i~~~v~Ril~~k~~~~~f~-~~~----~~---------~~~~~a~~~~ 334 (397)
T COG1472 270 LKAGVDIVLVCNELYEAYLVVLELVG-LSEARLDDAVRRILRVKFKLGLFE-NPY----SS---------EHRALAREAA 334 (397)
T ss_pred HhcCCCEEecCCchhHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhcccc-CCC----ch---------hhHHHHHHHH
Confidence 999999998532 33 3333333444 999999999999999999999999 442 21 8999999999
Q ss_pred HhCeEEeecCCCCCCCCCCCCceEEEECcCCCccccccCccc
Q 008175 391 RQGIVLLKNQGPSLPLSHIRHRTVAVIGPNSDVTVTMIGNYA 432 (575)
Q Consensus 391 ~~sivLLKN~~~~LPL~~~~~~kI~viG~~a~~~~~~~g~~~ 432 (575)
++|+|||||+..+||++ ++.++|+++||+++.. . |+|+
T Consensus 335 ~~~~~ll~n~~~~~p~~-~~~~~i~v~g~~~~~~-~--g~~~ 372 (397)
T COG1472 335 RESIVLLKNDGGLLPLK-KSAKRIAVIGPYADDG-D--GGWS 372 (397)
T ss_pred HHHHHHHHhccCCCccc-cccCceEEEccccccC-C--CCee
Confidence 99999999999999999 5567999999999887 5 5555
No 4
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=100.00 E-value=8.2e-62 Score=498.93 Aligned_cols=265 Identities=32% Similarity=0.526 Sum_probs=212.8
Q ss_pred CHHHHHHHhhCC----------------------------CCCCCCCCCCchhhhhcccccccccCCCcccCCCCCCccc
Q 008175 61 SLQEKVKLLISG----------------------------AAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGDFPGATS 112 (575)
Q Consensus 61 TleEkv~ql~~~----------------------------~~~~~~~gip~~~~~~~~~~g~~~~g~~~~~~~~~~~~t~ 112 (575)
|+|||||||++. ....+++|+|.+ +..|+++|+... .+ .+.|.
T Consensus 1 TleeKigQl~~~~~~~i~~~~vGgv~~~~~~~~~~~~~~~~~~~~~~~iP~~-i~~D~egG~~~~-----~~---~~~t~ 71 (299)
T PF00933_consen 1 TLEEKIGQLFMELKELIKEYHVGGVILPEQLKQLTQSLQAISEQSRLGIPLL-IAIDQEGGIVQR-----LG---GGFTA 71 (299)
T ss_dssp -HHHHHHHTEEHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHCCGCGTCT-E-EEEEETTSTTTS-----TT---TTS--
T ss_pred CHHHHHHHHHHHHHHHHhcCCccEEEcHHHHHHHHHHHHHHhhccccCCCeE-EEEcCCCceEec-----CC---CcCcc
Confidence 899999999941 013568999987 456777775321 11 13699
Q ss_pred ccchhhhhccCCHHHHHHHHHHHHHHHHHhhcCCCCcceE-eccccccCCCCCCCccCCCCCCChHHHHHHHHHHHHHHh
Q 008175 113 FPQVITTASSFNATLWEAIGRVVSDEARAMYNGGTAGLTY-WSPNVNIFRDPRWGRGQETPGEDPVLSGKYAASYVRGLQ 191 (575)
Q Consensus 113 fP~~~~l~at~d~~l~~~~g~~~g~E~~a~~~~g~~Gi~~-~aPv~di~~~p~~gr~~rsfgeDp~~v~~~a~a~v~G~q 191 (575)
||+++++|+|||+++++++|+.+|+|++++ |||+ ||||+||.++|+|||+.|||||||++|++|+.|||+|+|
T Consensus 72 ~P~~~~l~at~d~~~a~~~g~~~a~el~~~------Gin~~~aPv~Dv~~~p~~~~~~rsfgeDp~~v~~~~~a~v~G~q 145 (299)
T PF00933_consen 72 FPSPMALAATWDPELAYEVGRIIARELRAL------GINVNFAPVVDVNRNPRWGRGERSFGEDPDLVAEMARAFVRGLQ 145 (299)
T ss_dssp -S-HHHHHHHTCHHHHHHHHHHHHHHHHHT------T-SEEEEEB----SSTTSTTGGGSS-SSHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHHHh------hhccccccceeeeeeccccccccccchhHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999 9999 999999999999999999999999999999999999999
Q ss_pred cCCCCccceEEeeccccccc-CCCCCCCCcccccccCCHHHHHhhcCHHHHHHHHcCCcceeeecccccCCcccccCHHH
Q 008175 192 GSDGDRLKVAASCKHFTAYD-LDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNI 270 (575)
Q Consensus 192 ~~~g~~~~v~a~~KHFpg~g-~~~~~~~~~~~~~~~~~~~~l~e~~l~pF~~ai~~g~~~~vM~sy~~~~g~pa~~s~~~ 270 (575)
+. | |++|+||||||+ .++|.+.+ ...++.++|++.||+||+.+|+++.+.+||+||+.+|++|+|+|+++
T Consensus 146 ~~-g----v~~~~KHFpG~~~~d~~~~~~----~~~~~~~~l~~~~l~pF~~~i~~ag~~~VM~sy~~id~~pas~s~~~ 216 (299)
T PF00933_consen 146 GA-G----VAATAKHFPGHGAQDSHRDLP----SVDVSERELREIDLPPFRAAIKDAGADAVMTSYPAIDGTPASLSPKI 216 (299)
T ss_dssp CT-T----SEEEEEEETTGGCSCTTTTTE----EEE--HHHHHHTTSHHHHHHHHHTT-SEEEE-STCCTTEEGGG-HHH
T ss_pred cc-c----ccccccccccccccccccccc----eecCCcccccchhcccchhcccccccceeeeeccccCCccchhhhcc
Confidence 99 9 999999999974 55555443 34579999999999999999944445699999999999999999999
Q ss_pred HHHHhhhhcCCCcEEecCcchhhhcccCccccCCHHHHHHHHHHcCCCCCCCcc----hhHHHHHHHHcCCCCHHHHHHH
Q 008175 271 LKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCGPF----LGLHTESAVQRGLLSEIDINNA 346 (575)
Q Consensus 271 l~~~LR~~~gf~G~visD~~~m~~~~~~~~~~~~~~~a~~~a~~AG~D~~l~~~----~~~~l~~av~~g~i~~~~id~a 346 (575)
|+++||++|||+|+|||||++|+++... .+..+++++|++||+||+|.+. ..+.|.++|++|.++++|||+|
T Consensus 217 l~~lLR~~lgf~G~viSD~~~m~~~~~~----~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~~~~ld~a 292 (299)
T PF00933_consen 217 LTDLLRNELGFDGVVISDDLEMGALSSN----YSIEEAAVRALNAGCDMLLVCNDPDDDIDALVEAVESGRISEERLDEA 292 (299)
T ss_dssp HCCCCCCCS---SEEEESTTTSHHHHCC----TTHHHHHHHHHHHT-SBEESSSSHHHHHHHHHHHHHTTSSGHHHHHHH
T ss_pred chhhCcCcccCCCeEecccchHHHHHhc----cccchHHHHHHhCccCeeCCCCchhHHHHHHHHHHHcCCCCHHHHHHH
Confidence 9999999999999999999999999763 3478999999999999998743 2489999999999999999999
Q ss_pred HHHHHHH
Q 008175 347 LVNTLTV 353 (575)
Q Consensus 347 v~ril~~ 353 (575)
|+|||++
T Consensus 293 v~RIl~~ 299 (299)
T PF00933_consen 293 VRRILRL 299 (299)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9999985
No 5
>PRK05337 beta-hexosaminidase; Provisional
Probab=100.00 E-value=2.6e-50 Score=416.46 Aligned_cols=243 Identities=20% Similarity=0.200 Sum_probs=199.6
Q ss_pred CCCchhhhhcccccccccCCCcccCCCCCCcccccchhhhhccCC------HHHHHHHHHHHHHHHHHhhcCCCCcceE-
Q 008175 80 GIKGYEWWSEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFN------ATLWEAIGRVVSDEARAMYNGGTAGLTY- 152 (575)
Q Consensus 80 gip~~~~~~~~~~g~~~~g~~~~~~~~~~~~t~fP~~~~l~at~d------~~l~~~~g~~~g~E~~a~~~~g~~Gi~~- 152 (575)
++|.+ +..|+++| .++....++|.||+++++|+||| +++++++|+++|+|+|++ |||+
T Consensus 54 ~~pll-i~iD~EgG--------~v~rl~~~~t~~P~~~~laat~d~~~~~~~~la~~~g~~~a~Elra~------Gin~~ 118 (337)
T PRK05337 54 RPPLL-IAVDQEGG--------RVQRFREGFTRLPAMQSFGALWDRDPLEALKLAEEAGWLMAAELRAC------GIDLS 118 (337)
T ss_pred CCCCE-EEEecCCC--------EeeecCCCCCCCCCHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHh------CCCcc
Confidence 46776 44455555 33222346899999999999999 899999999999999999 9999
Q ss_pred eccccccCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccCCCCCCCCcccccccCCHHHH
Q 008175 153 WSPNVNIFRDPRWGRGQETPGEDPVLSGKYAASYVRGLQGSDGDRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDI 232 (575)
Q Consensus 153 ~aPv~di~~~p~~gr~~rsfgeDp~~v~~~a~a~v~G~q~~~g~~~~v~a~~KHFpg~g~~~~~~~~~~~~~~~~~~~~l 232 (575)
|+||+||.+++.| ++.|+|||||++|++|+.||++|+|+. | |++|+|||||||.+..+.+.... ....+.++|
T Consensus 119 ~aPvlDv~~~~~~-ig~RsfgeDp~lv~~~a~a~i~Glq~~-g----v~~~~KHFpG~G~~~~dsh~~~~-~~~~~~~el 191 (337)
T PRK05337 119 FAPVLDLDGISAV-IGDRAFHRDPQVVAALASAFIDGMHAA-G----MAATGKHFPGHGAVEADSHVETP-VDERPLEEI 191 (337)
T ss_pred ccCccCCCCCCCe-eeccCCCCCHHHHHHHHHHHHHHHHHC-C----CEEEecccCCCCCCcCCCCCCCC-CCCCCHHHH
Confidence 9999999854333 668999999999999999999999999 9 99999999999975433332222 123467899
Q ss_pred HhhcCHHHHHHHHcCCcceeeec---ccccCCcccccCHHHHHHHhhhhcCCCcEEecCcchhhhcccCccccCCHHHHH
Q 008175 233 EDTFDVPFRMCVMEGKVASVMCS---YNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAA 309 (575)
Q Consensus 233 ~e~~l~pF~~ai~~g~~~~vM~s---y~~~~g~pa~~s~~~l~~~LR~~~gf~G~visD~~~m~~~~~~~~~~~~~~~a~ 309 (575)
++.||+||+.+|++| +.+||+| |+.+|+.|||+|+++|+++||+||||+|+|||||++|.++.. ..+..+++
T Consensus 192 ~~~~l~PF~~ai~~g-~~~vM~aHv~y~~id~~Pa~~S~~~l~~lLR~elGF~G~ViSD~l~m~a~~~----~~~~~~~~ 266 (337)
T PRK05337 192 RAEDMAPFRALIAAG-LDAVMPAHVIYPQVDPRPAGFSRYWLQDILRQELGFDGVIFSDDLSMEGAAV----AGDYAERA 266 (337)
T ss_pred HhhhHHHHHHHHhcC-CCEEEeCceeccCCCCCCCcCCHHHHHHHHHHhcCCCEEEEecchhhhhhhh----cCCHHHHH
Confidence 999999999999998 5699999 788899999999999999999999999999999999987542 34788999
Q ss_pred HHHHHcCCCCCCCcc---hhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 008175 310 ADAIRAGLDLDCGPF---LGLHTESAVQRGLLSEIDINNALVNTLTVQMRL 357 (575)
Q Consensus 310 ~~a~~AG~D~~l~~~---~~~~l~~av~~g~i~~~~id~av~ril~~k~~~ 357 (575)
++|++|||||+|... ....+.+++.+ +.+.+|+++++.+.
T Consensus 267 ~~al~AG~Dl~l~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~ 309 (337)
T PRK05337 267 QAALDAGCDMVLVCNNRDGAVSVLDNLSP--------PISAERLTRLYGRG 309 (337)
T ss_pred HHHHHcCCCEEeeCCCHHHHHHHHHHHHh--------hccHHHHHHHhccc
Confidence 999999999987643 33556666644 77788898888663
No 6
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=99.95 E-value=1.6e-27 Score=235.71 Aligned_cols=172 Identities=40% Similarity=0.558 Sum_probs=128.1
Q ss_pred eEEeecCCCCCCCCCCCCceEEEECcCCCccccccCccc-cCCCccCCHHHHHHhhhc---eeeecCCCccCCCChhHHH
Q 008175 394 IVLLKNQGPSLPLSHIRHRTVAVIGPNSDVTVTMIGNYA-GIACGYTTPLQGIGRYAR---TIHQQGCKDVACADDQLFG 469 (575)
Q Consensus 394 ivLLKN~~~~LPL~~~~~~kI~viG~~a~~~~~~~g~~~-g~~~~~~t~~~~l~~~~~---~~~~~g~~~~~~~~~~~~~ 469 (575)
||||||++++|||++++. ||+|+|+.+......++++. ..+.+..+++++++++.. +.+..++. ...+...++
T Consensus 1 ivLLKN~~~~LPL~~~~~-~v~viG~~~~~~~~~g~g~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~ 77 (227)
T PF01915_consen 1 IVLLKNEGNLLPLKPDKK-KVAVIGPNADNPVAQGGGSGNVNPGYGVTPLDALKQRFGNAGVVVPEGGD--AVDDDEGID 77 (227)
T ss_dssp -EEEEEGCG--SB-TTST-EEEEESTTTTSHHHCHBSTTSSTCSTHBHHHHHHHHHHHTTSEEEECCCC--CCCCCSCHH
T ss_pred CEEEEeCCCCCCCCCCCC-EEEEEcCccccccccCCcccccCccccccHHhhhccccCCCceEEeeecc--ccccccchH
Confidence 799999999999998743 99999999998766555544 345567899999998762 22222111 112456678
Q ss_pred HHHHHhhcCCEEEEEecCCCcccccc--------CCCCCCCCChhHHHHHHHHHhhCCCCEEEEEecCCceeccccccCC
Q 008175 470 AAIDASRQADATILVMGLDQSIEAEA--------LDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGPIDVAFAKNDP 541 (575)
Q Consensus 470 ~a~~~a~~aD~vIv~vg~~~~~~~eg--------~Dr~~l~L~~~q~~li~~v~~~~~~pvIvVl~~g~P~~l~~~~~~~ 541 (575)
++++.++++|++||+++ +.++|| .||.++.|++.|.+||+++++.+ +|+|||++.++||++.++. +
T Consensus 78 ~~~~~~~~aD~vIv~~~---~~~~e~~~~~~~~~~~~~~~~l~~~q~~li~~v~~~~-~~~Ivvv~~~~P~~l~~~~--~ 151 (227)
T PF01915_consen 78 EAVAAAKEADVVIVFVG---RPSGEGNDNNTEGESDRSDLALPANQQELIKAVAAAG-KKVIVVVNSGNPYDLDPWE--D 151 (227)
T ss_dssp HHHHHHHCSSEEEEEEE---TTSBCCCSS-EETTGSCSSTBCCCHHHHHHHHHHHHH-SCEEEEEE-SSGGCGHCCH--H
T ss_pred HHHHHhhcCCEEEEecc---ccccccccccccccCCcccccchhhHHHHHHHHHHhc-CCeEEEEecCCccccHHHH--h
Confidence 88999999999999998 223444 58999999999999999999754 6799999999999997664 4
Q ss_pred CccEEEEccCCChhHHHHHHHHHhcCCCCCccC
Q 008175 542 RIAAIIWAGYPGQAGGTAIADILFGTSNPGLIM 574 (575)
Q Consensus 542 ~v~ail~~~~~g~~~g~AladvL~G~~nPsGkL 574 (575)
+++|||++|++|+++++|++|||||++||||||
T Consensus 152 ~~~Ail~~~~~g~~~~~A~advL~G~~~PsGkL 184 (227)
T PF01915_consen 152 NVDAILAAYYPGQEGGEAIADVLFGDVNPSGKL 184 (227)
T ss_dssp C-SEEEEEES-GSBHHHHHHHHHTTSS---B--
T ss_pred hhceEeeccccchHHHHHHHHHHcCCCCCCCCc
Confidence 899999999999999999999999999999998
No 7
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=85.08 E-value=30 Score=37.53 Aligned_cols=96 Identities=20% Similarity=0.183 Sum_probs=56.7
Q ss_pred HHHcCCcceeeecccccCC-----cccccCHHHHHHHhhhhcCCCcEEecCcchhhhcccCccccCCHHHHHHHHHHcC-
Q 008175 243 CVMEGKVASVMCSYNQVNG-----VPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAG- 316 (575)
Q Consensus 243 ai~~g~~~~vM~sy~~~~g-----~pa~~s~~~l~~~LR~~~gf~G~visD~~~m~~~~~~~~~~~~~~~a~~~a~~AG- 316 (575)
.|+++.+ .+|.+.+++.| ..++-++.+++.+|+-=+.. |.-+... .|=..+|+..|
T Consensus 60 ~iDe~lv-l~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~-GaR~Aep----------------GEFs~RAFLNgK 121 (454)
T COG0486 60 IIDEVLV-LYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKL-GARLAEP----------------GEFSKRAFLNGK 121 (454)
T ss_pred EeeeeeE-EEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHc-CCeecCC----------------CcchHHHHhcCC
Confidence 3455655 78888777765 46777888887777654432 2222222 23335666666
Q ss_pred CCCCCC--------cchhHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHh
Q 008175 317 LDLDCG--------PFLGLHTESAVQ--RGLLSEIDINNALVNTLTVQMRL 357 (575)
Q Consensus 317 ~D~~l~--------~~~~~~l~~av~--~g~i~~~~id~av~ril~~k~~~ 357 (575)
.|+.-. .........|++ +|.+ ..++++-.++++.+....
T Consensus 122 ~DLtqAEai~dLI~A~te~a~r~A~~~l~G~l-s~~i~~lr~~li~~~a~v 171 (454)
T COG0486 122 LDLTQAEAIADLIDAKTEQAARIALRQLQGAL-SQLINELREALLELLAQV 171 (454)
T ss_pred ccHHHHHHHHHHHhCCCHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHh
Confidence 554311 112234455555 4666 457888888888887665
No 8
>COG1160 Predicted GTPases [General function prediction only]
Probab=65.22 E-value=17 Score=39.29 Aligned_cols=47 Identities=28% Similarity=0.327 Sum_probs=34.3
Q ss_pred HHHHHHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEec
Q 008175 469 GAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMS 528 (575)
Q Consensus 469 ~~a~~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q~~li~~v~~~~~~pvIvVl~~ 528 (575)
+++..++++||++|+++... + .+++...++.+.|. ..+||+|+|+|-
T Consensus 75 ~Qa~~Ai~eADvilfvVD~~-----~-------Git~~D~~ia~~Lr-~~~kpviLvvNK 121 (444)
T COG1160 75 EQALIAIEEADVILFVVDGR-----E-------GITPADEEIAKILR-RSKKPVILVVNK 121 (444)
T ss_pred HHHHHHHHhCCEEEEEEeCC-----C-------CCCHHHHHHHHHHH-hcCCCEEEEEEc
Confidence 44556779999999999521 2 25666777777776 467999999983
No 9
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=52.19 E-value=88 Score=34.02 Aligned_cols=49 Identities=20% Similarity=0.231 Sum_probs=28.9
Q ss_pred hhHHHHHHHHhhc--CCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHhhCCCCEE
Q 008175 465 DQLFGAAIDASRQ--ADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTI 523 (575)
Q Consensus 465 ~~~~~~a~~~a~~--aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q~~li~~v~~~~~~pvI 523 (575)
...+.++++.+.. .|++|++=|-. ...||. +=++..+++++++ ++.|||
T Consensus 178 ~~~i~~al~~~~~~~~Dviii~RGGG--------S~eDL~-~Fn~e~v~~ai~~-~~~Pvi 228 (438)
T PRK00286 178 AASIVAAIERANARGEDVLIVARGGG--------SLEDLW-AFNDEAVARAIAA-SRIPVI 228 (438)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecCCC--------CHHHhh-ccCcHHHHHHHHc-CCCCEE
Confidence 3455556655544 58887764422 222331 2246789999985 788965
No 10
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=50.64 E-value=14 Score=38.60 Aligned_cols=57 Identities=21% Similarity=0.367 Sum_probs=34.4
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCChh----HHHHHHHHHhhCCCCEEEEEecCCceecc
Q 008175 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGR----QQELVSKVSMASKGPTILVLMSGGPIDVA 535 (575)
Q Consensus 473 ~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~----q~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (575)
+..+++|++|++.|... .+|.+|.++ -.. -+++++.+.+.+++..|+++. +||+|+.
T Consensus 75 ~~~~daDvVVitAG~~~---k~g~tR~dl--l~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~ 135 (323)
T TIGR01759 75 EAFKDVDAALLVGAFPR---KPGMERADL--LSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANTN 135 (323)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHHH
Confidence 46789999999998542 345555432 112 244555666654434555555 5899873
No 11
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=49.49 E-value=21 Score=39.49 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=35.6
Q ss_pred hhhhcCCCcEEecCcchhhhcccCccccCCHHHHHHHHHHcCCCCCCC
Q 008175 275 IRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCG 322 (575)
Q Consensus 275 LR~~~gf~G~visD~~~m~~~~~~~~~~~~~~~a~~~a~~AG~D~~l~ 322 (575)
|++=+||+|.|+||.++-+.+.- .....++++.+.---.-|.|+.|.
T Consensus 75 lh~f~~w~g~ilTDSGgfQv~s~-g~~~ltpe~~i~~Q~~iGsDI~~~ 121 (487)
T PRK13533 75 LHKLLGFDGPIMTDSGSYQLLVY-GDVEVTNEEILEFQRKIGSDIGVP 121 (487)
T ss_pred HHHHhCCCCCeEeccCCcEEEEc-CCccCCHHHHHHHHHHhCCCEEeE
Confidence 56678999999999998775442 223467888777777789999874
No 12
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=48.36 E-value=1.4e+02 Score=30.47 Aligned_cols=31 Identities=16% Similarity=0.099 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhcCCCCccceEEeecccccc
Q 008175 179 SGKYAASYVRGLQGSDGDRLKVAASCKHFTAY 210 (575)
Q Consensus 179 v~~~a~a~v~G~q~~~g~~~~v~a~~KHFpg~ 210 (575)
++.+++.||+-+++. +...+|++|=|.+||.
T Consensus 106 IAT~T~~~V~~~~~~-~~~~~I~~TRKT~Pg~ 136 (284)
T PRK06096 106 VSDYLAQMLALLRER-YPDGNIACTRKAIPGT 136 (284)
T ss_pred HHHHHHHHHHHHHhh-CCCcEEEecCcCCCch
Confidence 688899999999875 4456799999999995
No 13
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=46.93 E-value=15 Score=38.18 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=32.2
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEecCCceecc
Q 008175 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDVA 535 (575)
Q Consensus 473 ~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q----~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (575)
+..+++|++|++.|.. + .+|.+|.++ -... +++.+++.+..++..++++ .+||.|+.
T Consensus 56 ~~~~daDiVVitaG~~-~--k~g~tR~dl--l~~N~~I~~~i~~~i~~~a~~~~iviv-vtNPvDv~ 116 (313)
T TIGR01756 56 EAFKDIDCAFLVASVP-L--KPGEVRADL--LTKNTPIFKATGEALSEYAKPTVKVLV-IGNPVNTN 116 (313)
T ss_pred HHhCCCCEEEECCCCC-C--CcCCCHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEE-eCCchHHH
Confidence 3578999999998854 2 245555332 1222 3444555554333244444 46899873
No 14
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=44.90 E-value=72 Score=24.35 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=18.4
Q ss_pred ChhHHHHHHHHHhhC-CCCEEEEEe
Q 008175 504 PGRQQELVSKVSMAS-KGPTILVLM 527 (575)
Q Consensus 504 ~~~q~~li~~v~~~~-~~pvIvVl~ 527 (575)
-++|..|.+++.... ++|+|+|++
T Consensus 31 ie~Q~~L~~~ik~~F~~~P~i~V~n 55 (58)
T PF06858_consen 31 IEEQLSLFKEIKPLFPNKPVIVVLN 55 (58)
T ss_dssp HHHHHHHHHHHHHHTTTS-EEEEE-
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 358999999998777 789988876
No 15
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=44.86 E-value=55 Score=23.57 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=25.0
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhC
Q 008175 329 TESAVQRGLLSEIDINNALVNTLTVQMRLG 358 (575)
Q Consensus 329 l~~av~~g~i~~~~id~av~ril~~k~~~g 358 (575)
.+..++...-+.+.|+..|..+|.+|..+|
T Consensus 13 ~VRkLKa~KA~k~~i~~eV~~LL~LKaqlg 42 (45)
T cd00938 13 LVRKLKAEKASKEQIAEEVAKLLELKAQLG 42 (45)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHhC
Confidence 344456677889999999999999999987
No 16
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=43.81 E-value=1.6e+02 Score=31.99 Aligned_cols=48 Identities=21% Similarity=0.215 Sum_probs=27.7
Q ss_pred hHHHHHHHHhhc---CCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHhhCCCCEE
Q 008175 466 QLFGAAIDASRQ---ADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTI 523 (575)
Q Consensus 466 ~~~~~a~~~a~~---aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q~~li~~v~~~~~~pvI 523 (575)
..+..+++.+.. .|++||+=|-. ...|| .+-++..++++++. ++.|||
T Consensus 173 ~~i~~al~~~~~~~~~dviii~RGGG--------s~eDL-~~Fn~e~~~rai~~-~~~Pvi 223 (432)
T TIGR00237 173 QSIVESIELANTKNECDVLIVGRGGG--------SLEDL-WSFNDEKVARAIFL-SKIPII 223 (432)
T ss_pred HHHHHHHHHhhcCCCCCEEEEecCCC--------CHHHh-hhcCcHHHHHHHHc-CCCCEE
Confidence 445555544433 68887765422 22233 12356779999985 788965
No 17
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=43.32 E-value=22 Score=36.86 Aligned_cols=58 Identities=16% Similarity=0.381 Sum_probs=34.6
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCC-C-ChhHHHHHHHHHhhCCCCEEEEEecCCceecc
Q 008175 473 DASRQADATILVMGLDQSIEAEALDRAGLL-L-PGRQQELVSKVSMASKGPTILVLMSGGPIDVA 535 (575)
Q Consensus 473 ~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~-L-~~~q~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (575)
+..+++|+||++.|.+. ++|.+|.+|- - -.=.+++.+++.+.+++ .++++. +||+|+.
T Consensus 65 ~~~~~aDiVvitAG~pr---KpGmtR~DLl~~Na~I~~~i~~~i~~~~~d-~ivlVv-tNPvD~~ 124 (313)
T COG0039 65 EDLKGADIVVITAGVPR---KPGMTRLDLLEKNAKIVKDIAKAIAKYAPD-AIVLVV-TNPVDIL 124 (313)
T ss_pred hhhcCCCEEEEeCCCCC---CCCCCHHHHHHhhHHHHHHHHHHHHhhCCC-eEEEEe-cCcHHHH
Confidence 45689999999998543 4555664431 0 01134555666665554 444444 5899874
No 18
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=42.87 E-value=2e+02 Score=29.37 Aligned_cols=31 Identities=16% Similarity=0.050 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCCCCccceEEeecccccc
Q 008175 179 SGKYAASYVRGLQGSDGDRLKVAASCKHFTAY 210 (575)
Q Consensus 179 v~~~a~a~v~G~q~~~g~~~~v~a~~KHFpg~ 210 (575)
++.++..||+-+.+. +...+|++|-|.+||.
T Consensus 105 IAT~T~~~V~~~~~~-~~~~~I~~TRKT~Pg~ 135 (277)
T TIGR01334 105 VATYTHKMVTLAKKI-SPMAVVACTRKAIPLT 135 (277)
T ss_pred HHHHHHHHHHHHHhc-CCCCEEEecCCCCCCh
Confidence 788899999999875 4456799999999984
No 19
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=41.05 E-value=57 Score=29.12 Aligned_cols=18 Identities=6% Similarity=0.147 Sum_probs=13.7
Q ss_pred HHHHHHhhcCCEEEEEec
Q 008175 469 GAAIDASRQADATILVMG 486 (575)
Q Consensus 469 ~~a~~~a~~aD~vIv~vg 486 (575)
.++.+.++.+|++++++.
T Consensus 3 ~~~~~~i~~aD~vl~ViD 20 (141)
T cd01857 3 RQLWRVVERSDIVVQIVD 20 (141)
T ss_pred HHHHHHHhhCCEEEEEEE
Confidence 456667788999888875
No 20
>PRK05442 malate dehydrogenase; Provisional
Probab=40.27 E-value=19 Score=37.56 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=32.2
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEecCCceecc
Q 008175 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDVA 535 (575)
Q Consensus 473 ~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q----~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (575)
+..++||++|++.|.. + .+|.+|.++ -... +++.+.+.+..+...++++. +||+|+.
T Consensus 76 ~~~~daDiVVitaG~~-~--k~g~tR~dl--l~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~ 136 (326)
T PRK05442 76 VAFKDADVALLVGARP-R--GPGMERKDL--LEANGAIFTAQGKALNEVAARDVKVLVV-GNPANTN 136 (326)
T ss_pred HHhCCCCEEEEeCCCC-C--CCCCcHHHH--HHHHHHHHHHHHHHHHHhCCCCeEEEEe-CCchHHH
Confidence 4678999999988853 2 345555432 2222 33444555533233444444 5899873
No 21
>PLN00135 malate dehydrogenase
Probab=40.02 E-value=26 Score=36.32 Aligned_cols=57 Identities=12% Similarity=0.324 Sum_probs=33.0
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEecCCceecc
Q 008175 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDVA 535 (575)
Q Consensus 473 ~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q----~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (575)
+..++||+||++.|... .+|.+|.++ -... +++++.+.+..+...++++. +||+|+.
T Consensus 54 ~~~~daDiVVitAG~~~---k~g~sR~dl--l~~N~~I~~~i~~~i~~~~~p~aivivv-sNPvDv~ 114 (309)
T PLN00135 54 EACKGVNIAVMVGGFPR---KEGMERKDV--MSKNVSIYKSQASALEKHAAPDCKVLVV-ANPANTN 114 (309)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHHhcCCCeEEEEe-CCcHHHH
Confidence 46789999999998642 244455332 1122 34455666532334555544 5899873
No 22
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=37.74 E-value=20 Score=38.36 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=31.5
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHH----HHHHHHhhCCCCEEEEEecCCceecc
Q 008175 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQE----LVSKVSMASKGPTILVLMSGGPIDVA 535 (575)
Q Consensus 473 ~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q~~----li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (575)
+..+++|++|++.|.. + .+|.+|.++ -....+ +.+.+.+..++..|+++ .+||.|+.
T Consensus 116 ~~~kdaDIVVitAG~p-r--kpg~tR~dl--l~~N~~I~k~i~~~I~~~a~~~~iviV-VsNPvDv~ 176 (387)
T TIGR01757 116 EVFEDADWALLIGAKP-R--GPGMERADL--LDINGQIFADQGKALNAVASKNCKVLV-VGNPCNTN 176 (387)
T ss_pred HHhCCCCEEEECCCCC-C--CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCCCeEEEE-cCCcHHHH
Confidence 4678999999988854 2 344455332 222223 33444442323444444 46999873
No 23
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=37.33 E-value=10 Score=34.40 Aligned_cols=54 Identities=22% Similarity=0.466 Sum_probs=30.0
Q ss_pred HhhcCCEEEEEecCCCccccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEecCCceec
Q 008175 474 ASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDV 534 (575)
Q Consensus 474 ~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q----~~li~~v~~~~~~pvIvVl~~g~P~~l 534 (575)
..+++|++|++.|... .+|.+|.++ -... +++.+.+.+.+++. ++++. +||.|+
T Consensus 66 ~~~~aDivvitag~~~---~~g~sR~~l--l~~N~~i~~~~~~~i~~~~p~~-~vivv-tNPvd~ 123 (141)
T PF00056_consen 66 ALKDADIVVITAGVPR---KPGMSRLDL--LEANAKIVKEIAKKIAKYAPDA-IVIVV-TNPVDV 123 (141)
T ss_dssp GGTTESEEEETTSTSS---STTSSHHHH--HHHHHHHHHHHHHHHHHHSTTS-EEEE--SSSHHH
T ss_pred ccccccEEEEeccccc---cccccHHHH--HHHhHhHHHHHHHHHHHhCCcc-EEEEe-CCcHHH
Confidence 5678999998887542 344444332 1223 33444555555554 43444 589986
No 24
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=37.32 E-value=29 Score=36.20 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=32.7
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEecCCceecc
Q 008175 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDVA 535 (575)
Q Consensus 473 ~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q----~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (575)
+..+++|++|++.|... .+|.+|.++ -... +++.+.+.+.++...|+++. +||+|+.
T Consensus 74 ~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~ 134 (322)
T cd01338 74 VAFKDADWALLVGAKPR---GPGMERADL--LKANGKIFTAQGKALNDVASRDVKVLVV-GNPCNTN 134 (322)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEEe-cCcHHHH
Confidence 46789999999988542 245555432 2222 33444555544224554444 6899873
No 25
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=37.17 E-value=30 Score=36.05 Aligned_cols=56 Identities=21% Similarity=0.373 Sum_probs=32.4
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEecCCceec
Q 008175 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDV 534 (575)
Q Consensus 473 ~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q----~~li~~v~~~~~~pvIvVl~~g~P~~l 534 (575)
+..+++|+||++.|.+ + .+|.+|.++ -... +++.+++.+.++...|+++. +||+|+
T Consensus 72 ~~~~~aDiVVitAG~~-~--~~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 131 (323)
T cd00704 72 EAFKDVDVAILVGAFP-R--KPGMERADL--LRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANT 131 (323)
T ss_pred HHhCCCCEEEEeCCCC-C--CcCCcHHHH--HHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHH
Confidence 4678999999998854 2 244455332 1222 34455566543234554544 689986
No 26
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=36.74 E-value=31 Score=29.13 Aligned_cols=19 Identities=37% Similarity=0.443 Sum_probs=8.2
Q ss_pred Cccc---hHHHHHHHHHHhhhc
Q 008175 1 MAST---IAFFFLGLILLSASS 19 (575)
Q Consensus 1 ~~~~---~~~~~~~~~~~~~~~ 19 (575)
|+|= |+++||+++|++++.
T Consensus 1 MaSK~~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSE 22 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhh
Confidence 5653 333334444444443
No 27
>COG1159 Era GTPase [General function prediction only]
Probab=36.43 E-value=1.7e+02 Score=30.05 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=30.0
Q ss_pred HHHHHHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEe
Q 008175 469 GAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLM 527 (575)
Q Consensus 469 ~~a~~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q~~li~~v~~~~~~pvIvVl~ 527 (575)
..+.+..+++|++++++-... .+......+++.+.+ .+.|+|+++|
T Consensus 77 ~~a~~sl~dvDlilfvvd~~~------------~~~~~d~~il~~lk~-~~~pvil~iN 122 (298)
T COG1159 77 KAARSALKDVDLILFVVDADE------------GWGPGDEFILEQLKK-TKTPVILVVN 122 (298)
T ss_pred HHHHHHhccCcEEEEEEeccc------------cCCccHHHHHHHHhh-cCCCeEEEEE
Confidence 445567789999999985321 122345566666664 4568888887
No 28
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=35.22 E-value=1.6e+02 Score=27.50 Aligned_cols=51 Identities=25% Similarity=0.356 Sum_probs=32.5
Q ss_pred hhHHHHHHHHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEec
Q 008175 465 DQLFGAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMS 528 (575)
Q Consensus 465 ~~~~~~a~~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q~~li~~v~~~~~~pvIvVl~~ 528 (575)
.+...+....+..+|.+|+++... +| +.....+.++.+.. .+.|+|+|+|-
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~-----~g-------~~~~~~~~l~~~~~-~~~p~ivvlNK 131 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDAN-----DG-------IQPQTEEHLKILRE-LGIPIIVVLNK 131 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETT-----TB-------STHHHHHHHHHHHH-TT-SEEEEEET
T ss_pred cceeecccceecccccceeeeecc-----cc-------cccccccccccccc-cccceEEeeee
Confidence 344556666788999999999632 11 33445566666654 67888888873
No 29
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=34.27 E-value=30 Score=35.65 Aligned_cols=58 Identities=14% Similarity=0.291 Sum_probs=33.0
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCC--hhHHHHHHHHHhhCCCCEEEEEecCCceecc
Q 008175 473 DASRQADATILVMGLDQSIEAEALDRAGLLLP--GRQQELVSKVSMASKGPTILVLMSGGPIDVA 535 (575)
Q Consensus 473 ~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~--~~q~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (575)
+..++||++|++.|... .+|.+|.++-.. +--+++.+.+.+.++ ..+++ +.+||.++.
T Consensus 62 ~~l~~aDiVIitag~p~---~~~~~R~~l~~~n~~i~~~~~~~i~~~~p-~~~vi-v~sNP~d~~ 121 (300)
T cd00300 62 ADAADADIVVITAGAPR---KPGETRLDLINRNAPILRSVITNLKKYGP-DAIIL-VVSNPVDIL 121 (300)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE-EccChHHHH
Confidence 36789999999998653 245555432110 012444555655443 34444 446899873
No 30
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=34.16 E-value=3.5e+02 Score=24.69 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=41.2
Q ss_pred HHHHHHHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEecC-Cc---eec----ccccc
Q 008175 468 FGAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSG-GP---IDV----AFAKN 539 (575)
Q Consensus 468 ~~~a~~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q~~li~~v~~~~~~pvIvVl~~g-~P---~~l----~~~~~ 539 (575)
.......+.+||+++++...... .-.+|++ .+...++|||=|+.-- -| -++ .|+.
T Consensus 54 y~aLi~ta~dad~V~ll~dat~~---------~~~~pP~-------fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~- 116 (143)
T PF10662_consen 54 YHALIVTAQDADVVLLLQDATEP---------RSVFPPG-------FASMFNKPVIGVITKIDLPSDDANIERAKKWLK- 116 (143)
T ss_pred HHHHHHHHhhCCEEEEEecCCCC---------CccCCch-------hhcccCCCEEEEEECccCccchhhHHHHHHHHH-
Confidence 34455677899999998853321 1112331 2223456777776521 11 111 1222
Q ss_pred CCCccEEEEccCCChhHHHHHHHHH
Q 008175 540 DPRIAAIIWAGYPGQAGGTAIADIL 564 (575)
Q Consensus 540 ~~~v~ail~~~~~g~~~g~AladvL 564 (575)
.-.++-|..+.....+|-+.+.+.|
T Consensus 117 ~aG~~~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 117 NAGVKEIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred HcCCCCeEEEECCCCcCHHHHHHHH
Confidence 1245556666666666667666655
No 31
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=33.52 E-value=1.1e+02 Score=28.38 Aligned_cols=38 Identities=26% Similarity=0.289 Sum_probs=26.5
Q ss_pred hhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEe
Q 008175 475 SRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLM 527 (575)
Q Consensus 475 a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q~~li~~v~~~~~~pvIvVl~ 527 (575)
..+.|++|+++-.. + + +....|..++.+ .++|+|+|+|
T Consensus 76 ~~~~D~ii~VvDa~-----------~--l-~r~l~l~~ql~e-~g~P~vvvlN 113 (156)
T PF02421_consen 76 SEKPDLIIVVVDAT-----------N--L-ERNLYLTLQLLE-LGIPVVVVLN 113 (156)
T ss_dssp HTSSSEEEEEEEGG-----------G--H-HHHHHHHHHHHH-TTSSEEEEEE
T ss_pred hcCCCEEEEECCCC-----------C--H-HHHHHHHHHHHH-cCCCEEEEEe
Confidence 36789999998421 1 1 244567777775 6899999987
No 32
>PRK05086 malate dehydrogenase; Provisional
Probab=32.99 E-value=34 Score=35.43 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=31.8
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCCh---hHHHHHHHHHhhCCCCEEEEEecCCceec
Q 008175 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPG---RQQELVSKVSMASKGPTILVLMSGGPIDV 534 (575)
Q Consensus 473 ~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~---~q~~li~~v~~~~~~pvIvVl~~g~P~~l 534 (575)
+..+++|+||++.|... .++.+|.++ |.. --.++++++.+.+.+ .+++ +.+||.|+
T Consensus 65 ~~l~~~DiVIitaG~~~---~~~~~R~dl-l~~N~~i~~~ii~~i~~~~~~-~ivi-vvsNP~D~ 123 (312)
T PRK05086 65 PALEGADVVLISAGVAR---KPGMDRSDL-FNVNAGIVKNLVEKVAKTCPK-ACIG-IITNPVNT 123 (312)
T ss_pred HHcCCCCEEEEcCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHhCCC-eEEE-EccCchHH
Confidence 45578999999998642 233344332 111 234566667665444 4434 44689974
No 33
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=31.25 E-value=29 Score=37.82 Aligned_cols=57 Identities=14% Similarity=0.230 Sum_probs=31.9
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEecCCceecc
Q 008175 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDVA 535 (575)
Q Consensus 473 ~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q----~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (575)
+..+++|++|++.|.. + ++|.+|.++ -... +++.+++.+..+...++++ .+||.|+.
T Consensus 172 e~~kdaDiVVitAG~p-r--kpG~tR~dL--l~~N~~I~k~i~~~I~~~a~p~~ivIV-VsNPvDv~ 232 (444)
T PLN00112 172 EVFQDAEWALLIGAKP-R--GPGMERADL--LDINGQIFAEQGKALNEVASRNVKVIV-VGNPCNTN 232 (444)
T ss_pred HHhCcCCEEEECCCCC-C--CCCCCHHHH--HHHHHHHHHHHHHHHHHhcCCCeEEEE-cCCcHHHH
Confidence 4578999999988854 2 345566432 1222 3334455541233455444 46899873
No 34
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=30.85 E-value=52 Score=34.17 Aligned_cols=55 Identities=18% Similarity=0.386 Sum_probs=31.8
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEecCCceec
Q 008175 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDV 534 (575)
Q Consensus 473 ~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q----~~li~~v~~~~~~pvIvVl~~g~P~~l 534 (575)
+..+++|++|++.|... .+|.+|.++ -... +++.+.+.+.+++ .++++ .+||.|+
T Consensus 63 ~~~~daDivvitaG~~~---~~g~~R~dl--l~~N~~I~~~i~~~i~~~~p~-~iiiv-vsNPvDv 121 (312)
T TIGR01772 63 NALKGADVVVIPAGVPR---KPGMTRDDL--FNVNAGIVKDLVAAVAESCPK-AMILV-ITNPVNS 121 (312)
T ss_pred HHcCCCCEEEEeCCCCC---CCCccHHHH--HHHhHHHHHHHHHHHHHhCCC-eEEEE-ecCchhh
Confidence 46789999999998542 245555433 2222 3334455554443 45444 4689984
No 35
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=30.45 E-value=75 Score=36.46 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=35.3
Q ss_pred hhhhcCCCcEEecCcchhhhcccCccccCCHHHHHHHHHHcCCCCCCC
Q 008175 275 IRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCG 322 (575)
Q Consensus 275 LR~~~gf~G~visD~~~m~~~~~~~~~~~~~~~a~~~a~~AG~D~~l~ 322 (575)
|.+=+||+|.|+||.++-+.+.- .....++++.+.---.-|.|+.|.
T Consensus 74 lH~f~~w~g~ilTDSGgfQv~s~-g~~~~tpe~~i~~Q~~iGsDI~~~ 120 (639)
T PRK13534 74 IHSLIGFDGPIMTDSGSFQLSVY-GDVEVTNREIIEFQEKIGVDIGTI 120 (639)
T ss_pred hHHHhCCCCCeEecCCceeeeec-CccccCHHHHHHHHHHhCCCEEEE
Confidence 55668999999999999875542 223467877777667789999874
No 36
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=30.10 E-value=44 Score=34.66 Aligned_cols=55 Identities=18% Similarity=0.384 Sum_probs=31.8
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEecCCceec
Q 008175 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDV 534 (575)
Q Consensus 473 ~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q----~~li~~v~~~~~~pvIvVl~~g~P~~l 534 (575)
+..+++|++|++.|... .+|.+|.++ -... +++++.+.+.+++ .++++ .+||.|+
T Consensus 64 ~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~p~-a~viv-vtNPvDv 122 (310)
T cd01337 64 KALKGADVVVIPAGVPR---KPGMTRDDL--FNINAGIVRDLATAVAKACPK-ALILI-ISNPVNS 122 (310)
T ss_pred HhcCCCCEEEEeCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCC-eEEEE-ccCchhh
Confidence 46789999999998642 234445332 2222 3344455554443 44444 4689987
No 37
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=29.49 E-value=46 Score=34.75 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=31.4
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEecCCceecc
Q 008175 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDVA 535 (575)
Q Consensus 473 ~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q----~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (575)
+..+++|+||++.|... .++.+|.++ -... +++.+.+.+..+...|+++. +||+|+.
T Consensus 74 ~~l~~aDiVI~tAG~~~---~~~~~R~~l--~~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~ 134 (325)
T cd01336 74 EAFKDVDVAILVGAMPR---KEGMERKDL--LKANVKIFKEQGEALDKYAKKNVKVLVV-GNPANTN 134 (325)
T ss_pred HHhCCCCEEEEeCCcCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCCCeEEEEe-cCcHHHH
Confidence 45679999999988542 233344221 1122 34445555543334555555 5899873
No 38
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=29.45 E-value=1.1e+02 Score=20.03 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=22.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHH
Q 008175 327 LHTESAVQRGLLSEIDINNALVNTL 351 (575)
Q Consensus 327 ~~l~~av~~g~i~~~~id~av~ril 351 (575)
..+.+...+|.||++..++.-++||
T Consensus 6 ~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 5678889999999999999888886
No 39
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=29.32 E-value=2.7e+02 Score=28.64 Aligned_cols=49 Identities=18% Similarity=0.189 Sum_probs=28.5
Q ss_pred hhHHHHHHHHhh------cCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHhhCCCCEE
Q 008175 465 DQLFGAAIDASR------QADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTI 523 (575)
Q Consensus 465 ~~~~~~a~~~a~------~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q~~li~~v~~~~~~pvI 523 (575)
...+-++++.+. ..|++|++=|- +...+|. +-++..++++++. ++.|||
T Consensus 57 ~~~I~~al~~~~~~~~~~~~Dviii~RGG--------Gs~eDL~-~FN~e~varai~~-~~~Pvi 111 (319)
T PF02601_consen 57 AASIVSALRKANEMGQADDFDVIIIIRGG--------GSIEDLW-AFNDEEVARAIAA-SPIPVI 111 (319)
T ss_pred HHHHHHHHHHHHhccccccccEEEEecCC--------CChHHhc-ccChHHHHHHHHh-CCCCEE
Confidence 445555555543 36777665442 2222331 2257789999985 788965
No 40
>PLN02602 lactate dehydrogenase
Probab=29.31 E-value=43 Score=35.37 Aligned_cols=55 Identities=25% Similarity=0.427 Sum_probs=32.0
Q ss_pred HhhcCCEEEEEecCCCccccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEecCCceecc
Q 008175 474 ASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDVA 535 (575)
Q Consensus 474 ~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q----~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (575)
..++||+||++.|... .+|.+|.++ -... +++.+.+.+.+++ .++++. +||.++.
T Consensus 102 ~~~daDiVVitAG~~~---k~g~tR~dl--l~~N~~I~~~i~~~I~~~~p~-~ivivv-tNPvdv~ 160 (350)
T PLN02602 102 VTAGSDLCIVTAGARQ---IPGESRLNL--LQRNVALFRKIIPELAKYSPD-TILLIV-SNPVDVL 160 (350)
T ss_pred HhCCCCEEEECCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHHHCCC-eEEEEe-cCchHHH
Confidence 4689999999988543 245555432 2222 2444555554444 554544 5899873
No 41
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=28.70 E-value=2.2e+02 Score=31.09 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=35.2
Q ss_pred hcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEecCCcee
Q 008175 476 RQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGPID 533 (575)
Q Consensus 476 ~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q~~li~~v~~~~~~pvIvVl~~g~P~~ 533 (575)
+.+|..||++...+ . -+-.|.+ ..+.+.++++++.+ .+||+|+|+|+..|+.
T Consensus 143 dhstIgivVtTDgs-i--~dI~Re~--y~~aEe~~i~eLk~-~~kPfiivlN~~dp~~ 194 (492)
T TIGR02836 143 EHSTIGVVVTTDGT-I--TDIPRED--YVEAEERVIEELKE-LNKPFIILLNSTHPYH 194 (492)
T ss_pred hcCcEEEEEEcCCC-c--ccccccc--chHHHHHHHHHHHh-cCCCEEEEEECcCCCC
Confidence 38899988873211 0 0112323 34567889999976 6799999999999883
No 42
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=27.39 E-value=49 Score=32.46 Aligned_cols=99 Identities=15% Similarity=0.228 Sum_probs=64.9
Q ss_pred ChHHHHHHHHHHHHHHhcCC------CCccceEEeecccccccCCCCCCCCcccccccCCHHHHHhhcCHHHHHHHHcCC
Q 008175 175 DPVLSGKYAASYVRGLQGSD------GDRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEGK 248 (575)
Q Consensus 175 Dp~~v~~~a~a~v~G~q~~~------g~~~~v~a~~KHFpg~g~~~~~~~~~~~~~~~~~~~~l~e~~l~pF~~ai~~g~ 248 (575)
+|..+.++-.+...+.+... ..+++++..---|-|. . ++ +.+.+++ -|+.+++...
T Consensus 105 sp~~~~~~l~~~l~~~~~E~f~vL~Ld~qnrlI~~e~lf~GT----i---~~----s~V~PRE-------I~k~Al~~nA 166 (224)
T COG2003 105 SPEAVAEYLRAELGGEEREHFVVLYLDSQNRLIATETLFIGT----L---NV----SEVHPRE-------IFKEALKYNA 166 (224)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHhcCcCceecceeEEeee----c---cc----ceecHHH-------HHHHHHHhcc
Confidence 78888888888887776651 0233455443334331 0 00 1123333 3778888876
Q ss_pred cceeeecccccCCccc-ccCHHHHHHHhhhhcCCCcEEecCcchh
Q 008175 249 VASVMCSYNQVNGVPT-CADPNILKRTIRGEWRLNGYIVSDCDSV 292 (575)
Q Consensus 249 ~~~vM~sy~~~~g~pa-~~s~~~l~~~LR~~~gf~G~visD~~~m 292 (575)
. +||++||...|.|. +.....+|.-|.+-.++-|+.+=|-.-+
T Consensus 167 a-avIlaHNHPSGd~~PS~aD~~iT~rl~~a~~ll~I~vLDHiIi 210 (224)
T COG2003 167 A-AVILAHNHPSGDPTPSRADILITERLKEAGKLLGIRLLDHIII 210 (224)
T ss_pred h-hhheeccCCCCCCCcCHHHHHHHHHHHHHHHhcCceeeeeEEe
Confidence 5 99999999988654 4455678889999999999888887543
No 43
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=27.20 E-value=1.3e+02 Score=25.45 Aligned_cols=46 Identities=20% Similarity=0.354 Sum_probs=30.9
Q ss_pred HHHHHHHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEe
Q 008175 468 FGAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLM 527 (575)
Q Consensus 468 ~~~a~~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q~~li~~v~~~~~~pvIvVl~ 527 (575)
+....+....+|++|+++.... .+.....++++.+. .++|+|+|++
T Consensus 70 ~~~~~~~~~~~d~ii~vv~~~~------------~~~~~~~~~~~~l~--~~~~~i~v~N 115 (116)
T PF01926_consen 70 IRKFLEQISKSDLIIYVVDASN------------PITEDDKNILRELK--NKKPIILVLN 115 (116)
T ss_dssp HHHHHHHHCTESEEEEEEETTS------------HSHHHHHHHHHHHH--TTSEEEEEEE
T ss_pred HHHHHHHHHHCCEEEEEEECCC------------CCCHHHHHHHHHHh--cCCCEEEEEc
Confidence 3445666688999999985221 12245677878884 5688888876
No 44
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=26.73 E-value=2.1e+02 Score=27.64 Aligned_cols=54 Identities=11% Similarity=0.260 Sum_probs=36.8
Q ss_pred HHHHHHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHhhC---------------CCCEEEEEecCCcee
Q 008175 469 GAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMAS---------------KGPTILVLMSGGPID 533 (575)
Q Consensus 469 ~~a~~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q~~li~~v~~~~---------------~~pvIvVl~~g~P~~ 533 (575)
++.+++...||.+|+..- .-|+.+|..-+..|+.++.+. +|+++++...|++|.
T Consensus 79 d~l~~ef~aAD~vVi~~P-----------M~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~ 147 (202)
T COG1182 79 DKLLEEFLAADKVVIAAP-----------MYNFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYS 147 (202)
T ss_pred HHHHHHHHhcCeEEEEec-----------ccccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCC
Confidence 445566778998887653 136888998899999887531 255666666666664
No 45
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=26.40 E-value=49 Score=34.16 Aligned_cols=54 Identities=20% Similarity=0.438 Sum_probs=30.0
Q ss_pred hhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHH----HHHHhhCCCCEEEEEecCCceecc
Q 008175 475 SRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELV----SKVSMASKGPTILVLMSGGPIDVA 535 (575)
Q Consensus 475 a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q~~li----~~v~~~~~~pvIvVl~~g~P~~l~ 535 (575)
.+++|++|+++|.... +|.+|.+ |-....+++ +++.+.+++ .++++. .||.|+.
T Consensus 67 ~~~aDiVIitag~p~~---~~~sR~~--l~~~N~~iv~~i~~~I~~~~p~-~~iIv~-tNP~di~ 124 (305)
T TIGR01763 67 TANSDIVVITAGLPRK---PGMSRED--LLSMNAGIVREVTGRIMEHSPN-PIIVVV-SNPLDAM 124 (305)
T ss_pred hCCCCEEEEcCCCCCC---cCCCHHH--HHHHHHHHHHHHHHHHHHHCCC-eEEEEe-cCcHHHH
Confidence 5789999999996532 2333322 222333344 445554443 444444 5899873
No 46
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=26.40 E-value=2.8e+02 Score=25.82 Aligned_cols=50 Identities=16% Similarity=0.259 Sum_probs=30.1
Q ss_pred hHHHHHHHHh--hcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEecCCceec
Q 008175 466 QLFGAAIDAS--RQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGPIDV 534 (575)
Q Consensus 466 ~~~~~a~~~a--~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q~~li~~v~~~~~~pvIvVl~~g~P~~l 534 (575)
+..++.++.. .++|+++|.+|. +.|+.++.......+.+ | ++..|..++.
T Consensus 88 ~~~~~i~~~I~~~~pdiv~vglG~-----------------PkQE~~~~~~~~~l~~~-v-~i~vG~~~d~ 139 (172)
T PF03808_consen 88 EEEEAIINRINASGPDIVFVGLGA-----------------PKQERWIARHRQRLPAG-V-IIGVGGAFDF 139 (172)
T ss_pred hhHHHHHHHHHHcCCCEEEEECCC-----------------CHHHHHHHHHHHHCCCC-E-EEEECchhhh
Confidence 3334444443 566888777763 25888888887666555 3 3344656654
No 47
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=26.21 E-value=70 Score=32.46 Aligned_cols=111 Identities=20% Similarity=0.218 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCCCccceEEeecccccccCCCCCCCCcccccccCCHHHHHhhcCHHHHHHHHcC--------Ccc
Q 008175 179 SGKYAASYVRGLQGSDGDRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFDVPFRMCVMEG--------KVA 250 (575)
Q Consensus 179 v~~~a~a~v~G~q~~~g~~~~v~a~~KHFpg~g~~~~~~~~~~~~~~~~~~~~l~e~~l~pF~~ai~~g--------~~~ 250 (575)
++.+.+.||+-+.+. + .+|++|=|--||- +-++. .||..| ..+
T Consensus 109 IAT~T~~~V~~~~~~-~--~~i~~TRKT~Pgl-------------------R~leK-------yAV~~GGG~nHR~gLsD 159 (280)
T COG0157 109 IATATARMVEALRGT-N--VRIADTRKTTPGL-------------------RLLEK-------YAVRAGGGDNHRFGLSD 159 (280)
T ss_pred HHHHHHHHHHHhhcc-C--cEEEeccCCCccH-------------------HHHHH-------HHHHhcCCccccCCCcc
Confidence 678888888888887 3 4577777777773 11111 133332 234
Q ss_pred eeeecccccCCcccccCHHHHHHHhhhhcCCCcEEecCcchhhhcccCccccCCHHHHHHHHHHcCCCCCCCcch-hHHH
Q 008175 251 SVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCGPFL-GLHT 329 (575)
Q Consensus 251 ~vM~sy~~~~g~pa~~s~~~l~~~LR~~~gf~G~visD~~~m~~~~~~~~~~~~~~~a~~~a~~AG~D~~l~~~~-~~~l 329 (575)
+||.--|.+.-.. +. ...+ .-+|...+|.=-|- ...+.-+-+.+|++||.|++|.+.+ .+.+
T Consensus 160 avliKDNHia~~g-~i-~~Av-~~aR~~~~~~~kIE--------------VEvesle~~~eAl~agaDiImLDNm~~e~~ 222 (280)
T COG0157 160 AVLIKDNHIAAAG-SI-TEAV-RRARAAAPFTKKIE--------------VEVESLEEAEEALEAGADIIMLDNMSPEEL 222 (280)
T ss_pred eEEehhhHHHHhc-cH-HHHH-HHHHHhCCCCceEE--------------EEcCCHHHHHHHHHcCCCEEEecCCCHHHH
Confidence 6666533332111 11 2233 34576777743111 0112234568899999999987654 4566
Q ss_pred HHHHHc
Q 008175 330 ESAVQR 335 (575)
Q Consensus 330 ~~av~~ 335 (575)
+++++.
T Consensus 223 ~~av~~ 228 (280)
T COG0157 223 KEAVKL 228 (280)
T ss_pred HHHHHH
Confidence 666653
No 48
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.11 E-value=1.8e+02 Score=24.25 Aligned_cols=40 Identities=18% Similarity=0.072 Sum_probs=28.0
Q ss_pred HHHHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEE
Q 008175 471 AIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILV 525 (575)
Q Consensus 471 a~~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q~~li~~v~~~~~~pvIvV 525 (575)
.....+++|+||++++.-+. .-...+++.++..++|++.+
T Consensus 42 l~~~i~~aD~VIv~t~~vsH---------------~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYVSH---------------NAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHhcCCCCEEEEEeCCcCh---------------HHHHHHHHHHHHcCCcEEEE
Confidence 44567899999999873321 23457778888888997644
No 49
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=25.85 E-value=47 Score=34.24 Aligned_cols=55 Identities=24% Similarity=0.433 Sum_probs=32.0
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEecCCceec
Q 008175 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDV 534 (575)
Q Consensus 473 ~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q----~~li~~v~~~~~~pvIvVl~~g~P~~l 534 (575)
+..++||++|++.|... .+|.+|.++ -... +++.+.+.+.++ ..+++ +.+||.++
T Consensus 60 ~~~~daDivVitag~~r---k~g~~R~dl--l~~N~~i~~~~~~~i~~~~p-~~~vi-vvsNP~d~ 118 (299)
T TIGR01771 60 SDCKDADLVVITAGAPQ---KPGETRLEL--VGRNVRIMKSIVPEVVKSGF-DGIFL-VATNPVDI 118 (299)
T ss_pred HHHCCCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCC-CeEEE-EeCCHHHH
Confidence 45789999999988542 245566432 2222 334455655433 35544 44689876
No 50
>PRK13556 azoreductase; Provisional
Probab=25.54 E-value=2.2e+02 Score=27.28 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=35.3
Q ss_pred HHHHHHHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHhh---------------CCCCEEEEEecCCce
Q 008175 468 FGAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMA---------------SKGPTILVLMSGGPI 532 (575)
Q Consensus 468 ~~~a~~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q~~li~~v~~~---------------~~~pvIvVl~~g~P~ 532 (575)
.++..+..+.||.+|++.=. -++.+|..=+.+|+.+... .+||++++..+|+++
T Consensus 80 ~~~~~~~l~~AD~iVi~~P~-----------yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~ 148 (208)
T PRK13556 80 ADKYLNQFLEADKVVFAFPL-----------WNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVY 148 (208)
T ss_pred HHHHHHHHHHCCEEEEeccc-----------cccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCC
Confidence 34556678899998886521 1455777777778777632 256777777766665
No 51
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=25.48 E-value=33 Score=24.86 Aligned_cols=16 Identities=50% Similarity=0.725 Sum_probs=11.6
Q ss_pred cchHHHHHHHHHHhhh
Q 008175 3 STIAFFFLGLILLSAS 18 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (575)
|++++|||++|+++..
T Consensus 6 sllLlfflG~ISlSlC 21 (46)
T PF03032_consen 6 SLLLLFFLGTISLSLC 21 (46)
T ss_pred HHHHHHHHHHcccchH
Confidence 6788888887766544
No 52
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=25.38 E-value=58 Score=34.01 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=31.9
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEecCCceecc
Q 008175 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDVA 535 (575)
Q Consensus 473 ~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q----~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (575)
+..+++|++|++.|... . ++.+|.+ +-... +++.+++.+.+++..|+++. +||+|+.
T Consensus 71 ~~~~~aDiVVitAG~~~-~--~~~tr~~--ll~~N~~i~k~i~~~i~~~~~~~~iiivv-sNPvDv~ 131 (324)
T TIGR01758 71 VAFTDVDVAILVGAFPR-K--EGMERRD--LLSKNVKIFKEQGRALDKLAKKDCKVLVV-GNPANTN 131 (324)
T ss_pred HHhCCCCEEEEcCCCCC-C--CCCcHHH--HHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHHH
Confidence 46789999999888542 2 3334422 22222 33445555542234565554 5899873
No 53
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=24.88 E-value=70 Score=33.07 Aligned_cols=56 Identities=18% Similarity=0.324 Sum_probs=30.0
Q ss_pred HhhcCCEEEEEecCCCccccccCCCCCCC-CC-hhHHHHHHHHHhhCCCCEEEEEecCCceec
Q 008175 474 ASRQADATILVMGLDQSIEAEALDRAGLL-LP-GRQQELVSKVSMASKGPTILVLMSGGPIDV 534 (575)
Q Consensus 474 ~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~-L~-~~q~~li~~v~~~~~~pvIvVl~~g~P~~l 534 (575)
..+++|++|+++|... .++.+|.++- -. .--++.++.+.+.+++ .++++. +||+++
T Consensus 69 ~l~~aDiViitag~p~---~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~-~~viv~-~npvd~ 126 (309)
T cd05294 69 DVAGSDIVIITAGVPR---KEGMSRLDLAKKNAKIVKKYAKQIAEFAPD-TKILVV-TNPVDV 126 (309)
T ss_pred HhCCCCEEEEecCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEe-CCchHH
Confidence 4789999999998653 2444443220 00 0123344445554444 444444 589876
No 54
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=23.78 E-value=1e+02 Score=20.39 Aligned_cols=26 Identities=12% Similarity=0.064 Sum_probs=22.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCC
Q 008175 335 RGLLSEIDINNALVNTLTVQMRLGMF 360 (575)
Q Consensus 335 ~g~i~~~~id~av~ril~~k~~~gl~ 360 (575)
.|.|+.+.+-+++.|+.+.+.+.|-.
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ngRl 27 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESNGRL 27 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCC
Confidence 47899999999999999999988754
No 55
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=23.43 E-value=51 Score=34.09 Aligned_cols=58 Identities=19% Similarity=0.344 Sum_probs=31.3
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHH----HHHHHHhhCCCCEEEEEecCCceecc
Q 008175 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQE----LVSKVSMASKGPTILVLMSGGPIDVA 535 (575)
Q Consensus 473 ~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q~~----li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (575)
+..++||++|++.|.. +. +|.+|.-++|-....+ +++.+.+.+++ .|+++ .+||.|+.
T Consensus 64 ~~~~~aDivvitaG~~-~k--pg~tr~R~dll~~N~~I~~~i~~~i~~~~p~-~i~iv-vsNPvDv~ 125 (307)
T cd05290 64 DDCADADIIVITAGPS-ID--PGNTDDRLDLAQTNAKIIREIMGNITKVTKE-AVIIL-ITNPLDIA 125 (307)
T ss_pred HHhCCCCEEEECCCCC-CC--CCCCchHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEE-ecCcHHHH
Confidence 4678999999998854 22 3333201222233333 34455554443 44444 46899873
No 56
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=23.10 E-value=1.7e+02 Score=25.38 Aligned_cols=24 Identities=8% Similarity=0.119 Sum_probs=21.4
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHh
Q 008175 119 TASSFNATLWEAIGRVVSDEARAM 142 (575)
Q Consensus 119 l~at~d~~l~~~~g~~~g~E~~a~ 142 (575)
++.+.|.+.++.+|..+|+.+...
T Consensus 54 ~~~~~n~~aA~~vG~lla~ra~~~ 77 (109)
T CHL00139 54 LSSTSTCDASKLVGQKLAKKSLKK 77 (109)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHC
Confidence 456779999999999999999998
No 57
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=22.64 E-value=1.4e+02 Score=31.91 Aligned_cols=75 Identities=12% Similarity=0.019 Sum_probs=42.6
Q ss_pred hhhhcCCCcEEecCcchhhhcccC------------------------------------ccccCCHHHHHHHHHHcCCC
Q 008175 275 IRGEWRLNGYIVSDCDSVGVYYDT------------------------------------QHFTSTPEEAAADAIRAGLD 318 (575)
Q Consensus 275 LR~~~gf~G~visD~~~m~~~~~~------------------------------------~~~~~~~~~a~~~a~~AG~D 318 (575)
|.+=+||+|-|+||.+.-+...-. .....++++...---.-|.|
T Consensus 76 lH~fm~w~gpilTDSGgfQv~SL~~~~v~~~~~~~~~~~~~~~~~~i~e~Gv~F~s~~dG~~~~ltPe~~i~~Q~~iGsD 155 (372)
T PRK01008 76 LHQFIGRNAPIITDSGGFQIFSLAYGSVAEEIKSCGKKKGGSSILKITDEGVWFKSYRDGRKLFLSPEISVQAQKDLGAD 155 (372)
T ss_pred HHHHhCCCCcccccCcceeEEEeccccchhhhccccccccccccceecCCCeEEecCCCCCceeeCHHHHHHHHHHHCCC
Confidence 445679999999998765532100 01114666666666667999
Q ss_pred CCCCcchhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 008175 319 LDCGPFLGLHTESAVQRGLLSEIDINNALVNTLTVQMR 356 (575)
Q Consensus 319 ~~l~~~~~~~l~~av~~g~i~~~~id~av~ril~~k~~ 356 (575)
++|.-.. .-.-..+.+++.+|+.|-++.-.+
T Consensus 156 I~m~LDe-------~~~~~~~~~~~~~sv~rT~rW~~r 186 (372)
T PRK01008 156 IIIPLDE-------LLPFHADPTYFLQSCQRTYVWEKR 186 (372)
T ss_pred EEEEccc-------cCCCCCCHHHHHHHHHHHHHHHHH
Confidence 8864110 000124556667777666665433
No 58
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=21.95 E-value=67 Score=33.08 Aligned_cols=55 Identities=22% Similarity=0.411 Sum_probs=31.2
Q ss_pred HhhcCCEEEEEecCCCccccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEecCCceecc
Q 008175 474 ASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDVA 535 (575)
Q Consensus 474 ~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q----~~li~~v~~~~~~pvIvVl~~g~P~~l~ 535 (575)
..+++|++|++.|... .+|.+|.++ -... +++.+.+.+.+++ .++++ .+||.++.
T Consensus 65 ~l~~aDIVIitag~~~---~~g~~R~dl--l~~N~~i~~~~~~~i~~~~~~-~~viv-vsNP~d~~ 123 (306)
T cd05291 65 DCKDADIVVITAGAPQ---KPGETRLDL--LEKNAKIMKSIVPKIKASGFD-GIFLV-ASNPVDVI 123 (306)
T ss_pred HhCCCCEEEEccCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCC-eEEEE-ecChHHHH
Confidence 4579999999998542 245555332 2222 3334455554443 44444 46899873
No 59
>PRK13555 azoreductase; Provisional
Probab=21.87 E-value=2.6e+02 Score=27.08 Aligned_cols=54 Identities=15% Similarity=0.197 Sum_probs=32.9
Q ss_pred HHHHHHHhhcCCEEEEEecCCCccccccCCCCCCCCChhHHHHHHHHHhh---------------CCCCEEEEEecCCce
Q 008175 468 FGAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMA---------------SKGPTILVLMSGGPI 532 (575)
Q Consensus 468 ~~~a~~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q~~li~~v~~~---------------~~~pvIvVl~~g~P~ 532 (575)
.++..+..+.||.+|++.=. + ++.+|..=+..|+.+... .+||++++..+|+||
T Consensus 80 ~~~~~~~~~~AD~lvi~~P~--~---------n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~ 148 (208)
T PRK13555 80 VDQYLNQFLEADKVVFAFPL--W---------NFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDY 148 (208)
T ss_pred HHHHHHHHHHcCEEEEEcCc--c---------cccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCC
Confidence 34556677899988776521 1 344566666666655431 257777777767765
No 60
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=21.67 E-value=4.9e+02 Score=26.13 Aligned_cols=28 Identities=25% Similarity=0.184 Sum_probs=15.1
Q ss_pred HHHHHH-cCCCCCCC---cchhHHHHHHHHcC
Q 008175 309 AADAIR-AGLDLDCG---PFLGLHTESAVQRG 336 (575)
Q Consensus 309 ~~~a~~-AG~D~~l~---~~~~~~l~~av~~g 336 (575)
+++.++ +|++.+-+ .+..+.+..+++.|
T Consensus 96 a~r~~~~aGa~aVkiEd~~~~~~~I~al~~ag 127 (254)
T cd06557 96 AARLMKEAGADAVKLEGGAEVAETIRALVDAG 127 (254)
T ss_pred HHHHHHHhCCeEEEEcCcHHHHHHHHHHHHcC
Confidence 555666 77776643 22344555555544
No 61
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=21.24 E-value=1.7e+02 Score=26.40 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=10.6
Q ss_pred HHhhcCCEEEEEec
Q 008175 473 DASRQADATILVMG 486 (575)
Q Consensus 473 ~~a~~aD~vIv~vg 486 (575)
+..+++|++++++-
T Consensus 4 ~~l~~aD~il~VvD 17 (157)
T cd01858 4 KVIDSSDVVIQVLD 17 (157)
T ss_pred HhhhhCCEEEEEEE
Confidence 35678898888884
No 62
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=20.89 E-value=1.7e+02 Score=28.79 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=16.9
Q ss_pred ChHHHHHHHHhcCCHHHHHH
Q 008175 48 PIPQRVNDLIGRLSLQEKVK 67 (575)
Q Consensus 48 ~~~~~v~~ll~~mTleEkv~ 67 (575)
+..+|-+.-|..||.|||+.
T Consensus 52 s~~~rKr~RL~HLS~EEK~~ 71 (292)
T KOG4005|consen 52 SQPKRKRRRLDHLSWEEKVQ 71 (292)
T ss_pred cchHHHHHhhcccCHHHHHH
Confidence 45677888999999999984
No 63
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.49 E-value=7.3e+02 Score=25.22 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhcCCCCccceEEeecccccc
Q 008175 179 SGKYAASYVRGLQGSDGDRLKVAASCKHFTAY 210 (575)
Q Consensus 179 v~~~a~a~v~G~q~~~g~~~~v~a~~KHFpg~ 210 (575)
++.++..|++-+.+. +..|+.|=|.+||.
T Consensus 103 IAT~t~~~v~~~~~~---~~~i~~TRKt~Pg~ 131 (273)
T PRK05848 103 IATLTSRYVEALESH---KVKLLDTRKTRPLL 131 (273)
T ss_pred HHHHHHHHHHHhcCC---CeEEEecCCCCcch
Confidence 677788888877653 24588899999985
No 64
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=20.47 E-value=72 Score=33.09 Aligned_cols=55 Identities=20% Similarity=0.398 Sum_probs=31.2
Q ss_pred HHhhcCCEEEEEecCCCccccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEecCCceec
Q 008175 473 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDV 534 (575)
Q Consensus 473 ~~a~~aD~vIv~vg~~~~~~~eg~Dr~~l~L~~~q----~~li~~v~~~~~~pvIvVl~~g~P~~l 534 (575)
+..++||++|++.|... .+|.+|.++ -... +++++.+.+.+.+ .+++ +.+||.++
T Consensus 69 ~~~~~adivIitag~~~---k~g~~R~dl--l~~N~~i~~~i~~~i~~~~~~-~~vi-vvsNP~d~ 127 (315)
T PRK00066 69 SDCKDADLVVITAGAPQ---KPGETRLDL--VEKNLKIFKSIVGEVMASGFD-GIFL-VASNPVDI 127 (315)
T ss_pred HHhCCCCEEEEecCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCC-eEEE-EccCcHHH
Confidence 35689999999988542 245555332 2222 3334455554443 4444 44689976
Done!