Query 008176
Match_columns 575
No_of_seqs 359 out of 3289
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 20:27:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008176.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008176hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0745 Putative ATP-dependent 100.0 5.3E-54 1.1E-58 449.8 26.3 362 209-574 80-476 (564)
2 COG1219 ClpX ATP-dependent pro 100.0 9.3E-53 2E-57 427.6 21.0 289 263-574 47-335 (408)
3 PRK05342 clpX ATP-dependent pr 100.0 2E-40 4.4E-45 356.5 25.4 288 265-574 59-346 (412)
4 TIGR00382 clpX endopeptidase C 100.0 3.1E-39 6.7E-44 346.6 24.7 289 264-574 64-352 (413)
5 TIGR00390 hslU ATP-dependent p 100.0 3.9E-33 8.5E-38 297.4 19.0 232 266-574 1-367 (441)
6 PRK05201 hslU ATP-dependent pr 100.0 1.3E-32 2.9E-37 293.5 18.5 232 266-574 4-369 (443)
7 COG1220 HslU ATP-dependent pro 100.0 1.3E-29 2.8E-34 260.4 18.5 233 265-574 3-370 (444)
8 COG1222 RPT1 ATP-dependent 26S 99.9 6.4E-26 1.4E-30 235.2 12.3 219 278-556 152-372 (406)
9 COG0542 clpA ATP-binding subun 99.9 1.2E-24 2.5E-29 246.4 17.2 241 254-574 464-722 (786)
10 KOG0738 AAA+-type ATPase [Post 99.9 2.7E-23 5.9E-28 217.1 19.0 226 278-565 213-441 (491)
11 PRK11034 clpA ATP-dependent Cl 99.9 1.4E-22 2.9E-27 232.6 18.0 238 254-574 431-683 (758)
12 KOG0733 Nuclear AAA ATPase (VC 99.9 1.8E-22 3.9E-27 219.8 13.3 221 278-558 512-735 (802)
13 KOG0730 AAA+-type ATPase [Post 99.9 2E-22 4.4E-27 221.7 12.9 170 278-494 435-606 (693)
14 KOG0734 AAA+-type ATPase conta 99.9 5E-22 1.1E-26 213.6 13.2 210 274-551 302-516 (752)
15 TIGR02639 ClpA ATP-dependent C 99.9 1.7E-21 3.7E-26 224.1 18.4 237 255-574 428-679 (731)
16 KOG0736 Peroxisome assembly fa 99.9 7.3E-22 1.6E-26 219.4 13.6 221 278-559 673-898 (953)
17 CHL00095 clpC Clp protease ATP 99.9 4.7E-21 1E-25 222.9 21.0 250 254-574 482-749 (821)
18 COG1223 Predicted ATPase (AAA+ 99.9 1.2E-21 2.7E-26 196.1 11.9 167 278-494 122-288 (368)
19 KOG0739 AAA+-type ATPase [Post 99.9 5.2E-21 1.1E-25 194.6 14.5 166 278-493 134-302 (439)
20 KOG0727 26S proteasome regulat 99.8 1.1E-20 2.4E-25 188.7 13.1 173 278-496 156-332 (408)
21 KOG0733 Nuclear AAA ATPase (VC 99.8 8E-21 1.7E-25 207.1 12.2 186 278-514 191-378 (802)
22 KOG0731 AAA+-type ATPase conta 99.8 1.1E-20 2.4E-25 213.0 12.8 171 278-494 312-486 (774)
23 TIGR03345 VI_ClpV1 type VI sec 99.8 1.2E-19 2.7E-24 211.2 18.1 240 255-574 540-798 (852)
24 COG0465 HflB ATP-dependent Zn 99.8 9.6E-20 2.1E-24 202.1 11.9 171 278-494 151-324 (596)
25 KOG0728 26S proteasome regulat 99.8 8.8E-20 1.9E-24 182.1 9.1 170 278-494 148-322 (404)
26 PF07724 AAA_2: AAA domain (Cd 99.8 7.3E-20 1.6E-24 175.8 7.7 165 330-534 3-171 (171)
27 TIGR03346 chaperone_ClpB ATP-d 99.8 4.5E-18 9.9E-23 198.7 20.2 237 255-574 539-793 (852)
28 KOG0729 26S proteasome regulat 99.8 6.6E-19 1.4E-23 177.1 9.0 174 277-494 177-352 (435)
29 TIGR01241 FtsH_fam ATP-depende 99.8 4.6E-18 1E-22 187.7 16.5 173 274-494 53-229 (495)
30 COG0464 SpoVK ATPases of the A 99.8 8.1E-18 1.7E-22 185.4 17.2 222 278-560 243-466 (494)
31 PF05496 RuvB_N: Holliday junc 99.8 4.5E-18 9.7E-23 169.1 13.6 168 274-550 22-189 (233)
32 PRK10865 protein disaggregatio 99.8 1.7E-17 3.7E-22 193.8 19.3 238 254-574 541-796 (857)
33 CHL00181 cbbX CbbX; Provisiona 99.8 1.1E-17 2.4E-22 172.9 15.6 192 265-554 11-210 (287)
34 TIGR01243 CDC48 AAA family ATP 99.8 8.5E-18 1.8E-22 193.7 16.2 216 278-558 454-674 (733)
35 KOG0735 AAA+-type ATPase [Post 99.7 1.1E-17 2.3E-22 185.2 15.0 223 278-568 668-894 (952)
36 KOG0726 26S proteasome regulat 99.7 2E-18 4.4E-23 175.3 8.6 171 278-494 186-360 (440)
37 PTZ00454 26S protease regulato 99.7 1.2E-17 2.6E-22 179.9 14.9 173 275-494 144-320 (398)
38 KOG0737 AAA+-type ATPase [Post 99.7 2.4E-17 5.1E-22 172.4 16.2 235 264-561 80-316 (386)
39 TIGR02880 cbbX_cfxQ probable R 99.7 4.1E-17 8.9E-22 168.4 17.1 194 264-555 9-210 (284)
40 KOG0652 26S proteasome regulat 99.7 4.6E-18 9.9E-23 170.7 9.6 170 278-494 172-346 (424)
41 TIGR02881 spore_V_K stage V sp 99.7 7.3E-17 1.6E-21 164.0 17.9 183 272-553 2-191 (261)
42 PRK03992 proteasome-activating 99.7 2.9E-17 6.3E-22 176.5 14.9 171 278-494 132-306 (389)
43 PLN00020 ribulose bisphosphate 99.7 5.4E-17 1.2E-21 171.3 16.1 151 330-494 148-302 (413)
44 CHL00195 ycf46 Ycf46; Provisio 99.7 6.2E-17 1.3E-21 178.2 16.1 166 278-494 229-396 (489)
45 KOG2004 Mitochondrial ATP-depe 99.7 6.7E-17 1.5E-21 179.2 15.8 213 254-529 390-612 (906)
46 PTZ00361 26 proteosome regulat 99.7 9.5E-17 2.1E-21 174.6 15.6 171 278-494 184-358 (438)
47 TIGR03689 pup_AAA proteasome A 99.7 4.6E-17 9.9E-22 179.6 13.2 176 274-494 180-369 (512)
48 COG0466 Lon ATP-dependent Lon 99.7 1.1E-16 2.4E-21 178.3 15.6 209 254-525 302-520 (782)
49 KOG1051 Chaperone HSP104 and r 99.7 3.7E-16 8E-21 179.8 18.1 239 252-559 533-790 (898)
50 TIGR00763 lon ATP-dependent pr 99.7 4.9E-16 1.1E-20 180.2 19.2 167 254-470 299-473 (775)
51 COG2255 RuvB Holliday junction 99.7 4.5E-16 9.7E-21 158.3 14.7 168 274-550 24-191 (332)
52 CHL00176 ftsH cell division pr 99.7 3.7E-16 8E-21 177.0 14.7 172 278-494 184-357 (638)
53 PRK10787 DNA-binding ATP-depen 99.7 2.3E-15 5.1E-20 174.2 20.1 216 254-574 301-524 (784)
54 PRK10733 hflB ATP-dependent me 99.7 6.8E-16 1.5E-20 175.6 14.6 182 267-494 143-326 (644)
55 TIGR01242 26Sp45 26S proteasom 99.7 6.1E-16 1.3E-20 164.5 12.8 168 278-494 123-297 (364)
56 KOG0740 AAA+-type ATPase [Post 99.6 8E-16 1.7E-20 165.3 13.2 169 277-494 153-324 (428)
57 KOG0651 26S proteasome regulat 99.6 1.8E-15 3.8E-20 155.3 9.6 173 278-494 133-307 (388)
58 COG2256 MGS1 ATPase related to 99.6 4.4E-15 9.6E-20 157.0 12.0 82 331-435 49-130 (436)
59 COG0714 MoxR-like ATPases [Gen 99.6 1.6E-14 3.5E-19 151.7 11.7 176 267-493 14-194 (329)
60 PF00004 AAA: ATPase family as 99.6 1.2E-14 2.7E-19 129.8 8.9 129 333-488 1-131 (132)
61 CHL00206 ycf2 Ycf2; Provisiona 99.6 1.4E-14 3E-19 174.3 12.0 136 329-494 1629-1808(2281)
62 KOG0732 AAA+-type ATPase conta 99.5 1E-14 2.2E-19 169.1 9.7 173 274-494 263-442 (1080)
63 KOG0741 AAA+-type ATPase [Post 99.5 7.7E-15 1.7E-19 158.6 7.7 142 331-494 257-405 (744)
64 TIGR01243 CDC48 AAA family ATP 99.5 4.8E-14 1E-18 162.8 14.6 171 274-494 176-350 (733)
65 KOG0744 AAA+-type ATPase [Post 99.5 3.6E-13 7.9E-18 139.1 13.3 129 330-480 177-318 (423)
66 PF00158 Sigma54_activat: Sigm 99.5 2.6E-13 5.7E-18 130.1 11.1 145 279-486 1-159 (168)
67 COG3604 FhlA Transcriptional r 99.5 1.4E-13 2.9E-18 149.0 9.1 158 278-491 224-388 (550)
68 PF07726 AAA_3: ATPase family 99.5 1.2E-14 2.6E-19 133.3 0.7 112 332-470 1-113 (131)
69 KOG0730 AAA+-type ATPase [Post 99.5 2.8E-13 6.1E-18 150.2 11.4 170 277-494 184-355 (693)
70 TIGR00635 ruvB Holliday juncti 99.4 2E-12 4.4E-17 133.4 16.4 107 275-437 3-109 (305)
71 TIGR02640 gas_vesic_GvpN gas v 99.4 1.2E-12 2.6E-17 133.6 14.4 144 331-493 22-190 (262)
72 TIGR02639 ClpA ATP-dependent C 99.4 5.3E-13 1.2E-17 154.1 13.1 118 274-434 180-308 (731)
73 PRK00080 ruvB Holliday junctio 99.4 2.4E-12 5.1E-17 135.2 15.8 156 279-493 27-183 (328)
74 PF01078 Mg_chelatase: Magnesi 99.4 4.2E-13 9E-18 132.4 9.4 182 278-544 4-206 (206)
75 TIGR01650 PD_CobS cobaltochela 99.4 4.6E-13 9.9E-18 140.5 10.3 115 331-460 65-186 (327)
76 COG2204 AtoC Response regulato 99.4 4.9E-13 1.1E-17 145.6 10.2 163 275-493 139-308 (464)
77 COG3829 RocR Transcriptional r 99.4 1.1E-12 2.3E-17 143.5 11.1 159 278-492 246-412 (560)
78 PRK07003 DNA polymerase III su 99.4 2.8E-12 6E-17 145.9 13.9 105 278-435 17-145 (830)
79 KOG0742 AAA+-type ATPase [Post 99.4 3.1E-12 6.6E-17 135.4 13.0 183 331-550 385-571 (630)
80 PRK13342 recombination factor 99.4 4E-12 8.7E-17 137.7 14.0 82 331-435 37-118 (413)
81 TIGR03345 VI_ClpV1 type VI sec 99.4 3.9E-12 8.5E-17 148.9 13.6 166 273-550 184-360 (852)
82 PF07728 AAA_5: AAA domain (dy 99.4 4.6E-13 1E-17 122.5 4.5 124 332-471 1-125 (139)
83 KOG0989 Replication factor C, 99.4 1.2E-11 2.7E-16 127.3 15.2 160 278-517 37-205 (346)
84 PRK14956 DNA polymerase III su 99.4 4.4E-12 9.5E-17 139.0 12.6 105 278-435 19-147 (484)
85 PRK13531 regulatory ATPase Rav 99.3 6.7E-12 1.5E-16 137.5 13.1 123 268-440 11-138 (498)
86 PLN03025 replication factor C 99.3 5.3E-12 1.1E-16 132.2 11.6 105 279-434 15-124 (319)
87 PRK12323 DNA polymerase III su 99.3 7.3E-12 1.6E-16 140.9 13.4 140 278-493 17-186 (700)
88 KOG0991 Replication factor C, 99.3 2.3E-12 5.1E-17 128.3 7.8 157 278-517 28-189 (333)
89 PRK14962 DNA polymerase III su 99.3 1.4E-11 3.1E-16 135.7 14.3 104 278-434 15-142 (472)
90 TIGR02974 phageshock_pspF psp 99.3 8.5E-12 1.8E-16 131.6 11.6 149 279-483 1-156 (329)
91 PRK14949 DNA polymerase III su 99.3 1.5E-11 3.3E-16 142.1 14.5 105 278-435 17-145 (944)
92 PRK07994 DNA polymerase III su 99.3 1.5E-11 3.4E-16 139.3 14.3 105 278-435 17-145 (647)
93 PRK07764 DNA polymerase III su 99.3 1.1E-11 2.5E-16 144.0 13.2 105 278-435 16-146 (824)
94 KOG2028 ATPase related to the 99.3 1.2E-11 2.6E-16 129.6 11.6 81 331-434 163-247 (554)
95 CHL00081 chlI Mg-protoporyphyr 99.3 1E-11 2.3E-16 131.8 11.2 135 278-471 18-198 (350)
96 PRK13407 bchI magnesium chelat 99.3 1E-11 2.2E-16 131.3 10.7 140 278-471 9-182 (334)
97 PRK10865 protein disaggregatio 99.3 1.8E-11 3.9E-16 143.6 13.8 119 273-434 175-304 (857)
98 CHL00095 clpC Clp protease ATP 99.3 2.2E-11 4.7E-16 142.5 14.1 117 274-434 177-304 (821)
99 PRK11034 clpA ATP-dependent Cl 99.3 1.7E-11 3.7E-16 141.6 13.0 119 273-434 183-312 (758)
100 PRK14960 DNA polymerase III su 99.3 2.1E-11 4.5E-16 137.5 13.2 105 278-435 16-144 (702)
101 TIGR02902 spore_lonB ATP-depen 99.3 2.6E-11 5.6E-16 135.5 13.7 117 278-440 66-206 (531)
102 PRK13341 recombination factor 99.3 4.5E-11 9.7E-16 137.6 14.5 81 331-434 53-134 (725)
103 PRK14961 DNA polymerase III su 99.3 5.8E-11 1.3E-15 126.7 14.0 105 278-435 17-145 (363)
104 PRK14958 DNA polymerase III su 99.3 4.8E-11 1E-15 132.7 13.8 105 278-435 17-145 (509)
105 TIGR02030 BchI-ChlI magnesium 99.2 2.7E-11 5.9E-16 128.2 10.5 139 278-470 5-184 (337)
106 PRK07940 DNA polymerase III su 99.2 4.4E-11 9.5E-16 129.1 12.1 153 278-495 6-181 (394)
107 COG1221 PspF Transcriptional r 99.2 5.5E-11 1.2E-15 127.8 12.1 144 277-477 78-230 (403)
108 PRK14952 DNA polymerase III su 99.2 6.4E-11 1.4E-15 133.3 12.8 139 278-493 14-180 (584)
109 PRK14951 DNA polymerase III su 99.2 6.9E-11 1.5E-15 133.7 12.9 107 275-435 15-150 (618)
110 TIGR03346 chaperone_ClpB ATP-d 99.2 7.6E-11 1.6E-15 138.5 13.4 100 274-410 171-281 (852)
111 KOG0743 AAA+-type ATPase [Post 99.2 1.1E-10 2.4E-15 125.6 13.3 133 331-494 236-374 (457)
112 TIGR01817 nifA Nif-specific re 99.2 5.5E-11 1.2E-15 132.8 11.5 150 278-483 197-353 (534)
113 PRK06645 DNA polymerase III su 99.2 1.3E-10 2.7E-15 129.1 14.1 105 278-435 22-154 (507)
114 PRK14964 DNA polymerase III su 99.2 2.2E-10 4.8E-15 126.5 15.9 107 275-435 12-142 (491)
115 TIGR02442 Cob-chelat-sub cobal 99.2 6.4E-11 1.4E-15 135.0 12.0 137 278-469 5-178 (633)
116 PRK15424 propionate catabolism 99.2 1.4E-10 3.1E-15 129.4 14.5 148 279-486 221-388 (538)
117 PRK14957 DNA polymerase III su 99.2 1.2E-10 2.6E-15 130.1 13.9 105 278-435 17-145 (546)
118 PRK14959 DNA polymerase III su 99.2 1.1E-10 2.4E-15 131.6 13.3 105 278-435 17-145 (624)
119 PRK11608 pspF phage shock prot 99.2 2.3E-10 5E-15 120.5 15.0 148 278-481 7-161 (326)
120 PHA02244 ATPase-like protein 99.2 4.3E-10 9.2E-15 119.8 16.0 111 331-469 120-230 (383)
121 PRK05022 anaerobic nitric oxid 99.2 1.7E-10 3.7E-15 128.4 13.3 153 278-486 188-347 (509)
122 TIGR00368 Mg chelatase-related 99.1 1.5E-10 3.3E-15 128.3 11.3 184 278-546 193-397 (499)
123 PRK14963 DNA polymerase III su 99.1 3.5E-10 7.6E-15 125.7 14.2 107 275-435 13-142 (504)
124 TIGR02329 propionate_PrpR prop 99.1 4.1E-10 8.9E-15 125.7 14.7 147 279-485 214-372 (526)
125 PHA02544 44 clamp loader, smal 99.1 5.6E-10 1.2E-14 115.9 14.8 142 278-494 22-164 (316)
126 smart00350 MCM minichromosome 99.1 1.4E-10 3.1E-15 129.0 10.6 158 270-470 196-353 (509)
127 COG0606 Predicted ATPase with 99.1 7.8E-11 1.7E-15 127.7 8.1 183 278-545 180-384 (490)
128 PRK14969 DNA polymerase III su 99.1 3.4E-10 7.4E-15 126.5 13.1 105 278-435 17-145 (527)
129 PRK08691 DNA polymerase III su 99.1 4.2E-10 9.1E-15 127.9 13.3 105 278-435 17-145 (709)
130 PRK14965 DNA polymerase III su 99.1 5.3E-10 1.1E-14 126.2 13.9 140 278-493 17-181 (576)
131 PRK05563 DNA polymerase III su 99.1 5.7E-10 1.2E-14 125.5 13.5 105 278-435 17-145 (559)
132 PRK07133 DNA polymerase III su 99.1 6.6E-10 1.4E-14 127.1 13.9 110 278-435 19-144 (725)
133 TIGR02903 spore_lon_C ATP-depe 99.1 6.5E-10 1.4E-14 126.4 13.8 117 278-440 155-296 (615)
134 PRK14955 DNA polymerase III su 99.1 1.1E-09 2.3E-14 118.5 14.4 113 278-435 17-153 (397)
135 PRK04195 replication factor C 99.1 1E-09 2.2E-14 121.4 14.4 112 279-434 16-127 (482)
136 COG0542 clpA ATP-binding subun 99.1 1.3E-09 2.9E-14 124.9 15.6 186 267-571 161-357 (786)
137 PRK05896 DNA polymerase III su 99.1 7.7E-10 1.7E-14 124.4 13.2 140 278-493 17-181 (605)
138 COG2812 DnaX DNA polymerase II 99.1 3.9E-10 8.4E-15 124.7 10.0 192 278-550 17-242 (515)
139 PRK10820 DNA-binding transcrip 99.1 2.4E-09 5.3E-14 119.5 16.2 154 278-487 205-365 (520)
140 TIGR02397 dnaX_nterm DNA polym 99.1 1.4E-09 3E-14 114.3 13.2 105 278-435 15-143 (355)
141 PRK11388 DNA-binding transcrip 99.1 1.3E-09 2.8E-14 124.3 13.9 153 278-489 326-485 (638)
142 PRK14948 DNA polymerase III su 99.1 1.3E-09 2.8E-14 123.9 13.9 112 278-435 17-147 (620)
143 PRK15429 formate hydrogenlyase 99.0 1.4E-09 3.1E-14 125.0 13.9 152 278-485 377-535 (686)
144 PRK06305 DNA polymerase III su 99.0 2.8E-09 6E-14 117.1 15.5 107 275-435 16-147 (451)
145 PRK09111 DNA polymerase III su 99.0 1.6E-09 3.5E-14 122.6 13.7 110 278-435 25-158 (598)
146 PRK08451 DNA polymerase III su 99.0 1.6E-09 3.5E-14 120.8 13.4 107 275-435 13-143 (535)
147 PRK12402 replication factor C 99.0 3E-09 6.6E-14 110.7 14.0 110 279-434 17-150 (337)
148 PRK06647 DNA polymerase III su 99.0 4.9E-09 1.1E-13 118.0 15.7 105 278-435 17-145 (563)
149 PRK14953 DNA polymerase III su 99.0 5.7E-09 1.2E-13 115.6 15.5 105 278-435 17-145 (486)
150 PRK14954 DNA polymerase III su 99.0 5.8E-09 1.2E-13 118.4 15.8 113 278-435 17-153 (620)
151 PTZ00111 DNA replication licen 99.0 2.6E-09 5.7E-14 124.1 13.0 160 271-470 444-610 (915)
152 PRK14970 DNA polymerase III su 99.0 6.1E-09 1.3E-13 110.9 14.2 112 275-435 16-134 (367)
153 PRK14950 DNA polymerase III su 99.0 7.4E-09 1.6E-13 117.2 15.2 105 278-435 17-146 (585)
154 cd00009 AAA The AAA+ (ATPases 99.0 5.8E-09 1.3E-13 92.6 11.3 87 331-434 20-109 (151)
155 COG1239 ChlI Mg-chelatase subu 99.0 4.3E-09 9.2E-14 112.9 11.8 142 275-470 15-197 (423)
156 PF05673 DUF815: Protein of un 98.9 1.8E-08 3.9E-13 102.0 15.3 176 278-553 28-207 (249)
157 smart00763 AAA_PrkA PrkA AAA d 98.9 5.6E-09 1.2E-13 111.1 11.0 78 393-494 234-319 (361)
158 COG0470 HolB ATPase involved i 98.9 8.2E-09 1.8E-13 106.5 11.8 120 332-492 26-170 (325)
159 TIGR02928 orc1/cdc6 family rep 98.9 1.1E-08 2.5E-13 107.9 13.1 62 278-367 16-86 (365)
160 PRK14971 DNA polymerase III su 98.9 1.5E-08 3.2E-13 115.3 14.7 105 278-435 18-147 (614)
161 PRK00411 cdc6 cell division co 98.9 2.5E-08 5.5E-13 106.5 15.6 61 278-366 31-96 (394)
162 PRK09862 putative ATP-dependen 98.9 6.7E-09 1.5E-13 115.3 11.1 165 331-546 211-394 (506)
163 PRK09112 DNA polymerase III su 98.9 1.9E-08 4E-13 107.4 14.1 48 278-356 24-71 (351)
164 PRK00440 rfc replication facto 98.9 1.4E-08 3.1E-13 104.7 12.2 107 275-434 16-127 (319)
165 TIGR02031 BchD-ChlD magnesium 98.9 5.2E-09 1.1E-13 118.5 9.5 117 331-470 17-137 (589)
166 PRK07471 DNA polymerase III su 98.9 2.7E-08 6E-13 106.6 14.5 46 278-354 20-65 (365)
167 TIGR03420 DnaA_homol_Hda DnaA 98.9 1.7E-08 3.8E-13 99.3 11.6 76 331-434 39-117 (226)
168 COG3283 TyrR Transcriptional r 98.8 1.1E-08 2.4E-13 107.5 10.1 128 330-490 227-363 (511)
169 PRK10923 glnG nitrogen regulat 98.8 2.6E-08 5.5E-13 109.1 13.4 126 331-482 162-294 (469)
170 PRK05564 DNA polymerase III su 98.8 4.1E-08 8.8E-13 102.6 14.2 107 278-435 5-119 (313)
171 TIGR02915 PEP_resp_reg putativ 98.8 1.8E-08 4E-13 109.4 11.5 127 331-483 163-296 (445)
172 PRK08084 DNA replication initi 98.8 2.8E-08 6.2E-13 100.0 12.0 64 331-410 46-112 (235)
173 KOG1969 DNA replication checkp 98.8 2.2E-08 4.9E-13 112.7 12.2 194 279-494 273-472 (877)
174 TIGR00764 lon_rel lon-related 98.8 3E-08 6.4E-13 112.8 12.5 50 274-357 15-64 (608)
175 PRK11331 5-methylcytosine-spec 98.8 6.1E-08 1.3E-12 105.9 14.0 132 331-481 195-350 (459)
176 PTZ00112 origin recognition co 98.8 7.7E-08 1.7E-12 111.0 15.1 114 277-434 755-894 (1164)
177 COG1224 TIP49 DNA helicase TIP 98.8 6.6E-08 1.4E-12 101.8 13.1 63 278-367 40-104 (450)
178 PF13177 DNA_pol3_delta2: DNA 98.8 3.6E-08 7.8E-13 93.9 10.3 130 281-481 1-154 (162)
179 smart00382 AAA ATPases associa 98.8 2.9E-08 6.2E-13 86.9 8.8 76 331-410 3-93 (148)
180 TIGR00678 holB DNA polymerase 98.8 6.3E-08 1.4E-12 93.5 12.0 84 331-435 15-122 (188)
181 PF14532 Sigma54_activ_2: Sigm 98.8 2.6E-09 5.6E-14 98.5 2.2 91 280-434 1-94 (138)
182 TIGR01818 ntrC nitrogen regula 98.8 3.1E-08 6.7E-13 108.1 11.0 126 331-482 158-290 (463)
183 PRK08058 DNA polymerase III su 98.8 7E-08 1.5E-12 101.9 13.2 148 279-494 7-173 (329)
184 PF06068 TIP49: TIP49 C-termin 98.8 2.9E-08 6.4E-13 105.4 10.3 63 278-367 25-89 (398)
185 PRK07399 DNA polymerase III su 98.8 8.3E-08 1.8E-12 101.0 13.4 46 278-354 5-50 (314)
186 PRK08903 DnaA regulatory inact 98.7 6.7E-08 1.5E-12 95.9 11.7 70 331-434 43-115 (227)
187 PRK11361 acetoacetate metaboli 98.7 3.9E-08 8.4E-13 107.0 10.6 130 331-486 167-303 (457)
188 PRK15115 response regulator Gl 98.7 9.4E-08 2E-12 103.9 12.8 132 331-488 158-296 (444)
189 PRK08727 hypothetical protein; 98.7 9.8E-08 2.1E-12 96.0 11.3 75 332-434 43-120 (233)
190 COG3284 AcoR Transcriptional a 98.7 2.5E-08 5.3E-13 111.3 7.2 138 328-492 334-478 (606)
191 PRK06893 DNA replication initi 98.7 1.5E-07 3.2E-12 94.4 11.9 76 331-434 40-118 (229)
192 PRK00149 dnaA chromosomal repl 98.7 1.2E-07 2.5E-12 104.2 11.5 85 331-434 149-238 (450)
193 TIGR00362 DnaA chromosomal rep 98.7 1.7E-07 3.7E-12 101.4 12.6 85 331-434 137-226 (405)
194 PRK14086 dnaA chromosomal repl 98.7 5.1E-07 1.1E-11 102.1 16.2 84 332-434 316-404 (617)
195 KOG2170 ATPase of the AAA+ sup 98.6 5.5E-07 1.2E-11 93.2 14.8 211 267-553 72-300 (344)
196 KOG0735 AAA+-type ATPase [Post 98.6 9.6E-08 2.1E-12 107.4 9.9 144 327-494 428-577 (952)
197 PRK13765 ATP-dependent proteas 98.6 1.9E-07 4.1E-12 106.5 12.0 47 275-355 29-75 (637)
198 COG5271 MDN1 AAA ATPase contai 98.6 7E-08 1.5E-12 114.6 8.2 154 331-551 1544-1701(4600)
199 PRK05707 DNA polymerase III su 98.6 3.7E-07 8.1E-12 96.6 13.1 122 331-494 23-169 (328)
200 PF00493 MCM: MCM2/3/5 family 98.6 3.2E-08 6.9E-13 104.7 5.0 156 271-469 18-173 (331)
201 PF00308 Bac_DnaA: Bacterial d 98.6 3.2E-07 6.9E-12 91.7 11.7 82 331-434 35-124 (219)
202 KOG0478 DNA replication licens 98.6 2.1E-07 4.6E-12 104.3 10.6 153 271-469 423-578 (804)
203 COG1474 CDC6 Cdc6-related prot 98.6 6.5E-07 1.4E-11 96.1 14.0 62 279-368 19-85 (366)
204 PRK13406 bchD magnesium chelat 98.5 1.8E-07 3.8E-12 105.9 8.7 99 331-444 26-128 (584)
205 COG1241 MCM2 Predicted ATPase 98.5 3.7E-07 8E-12 104.1 10.4 156 271-469 280-435 (682)
206 PRK05642 DNA replication initi 98.5 4.1E-07 8.9E-12 91.6 9.6 76 331-434 46-124 (234)
207 PRK14088 dnaA chromosomal repl 98.5 8.3E-07 1.8E-11 97.4 12.3 86 331-434 131-221 (440)
208 PRK10365 transcriptional regul 98.5 7.3E-07 1.6E-11 96.5 10.8 130 330-485 162-298 (441)
209 PRK06871 DNA polymerase III su 98.4 4.1E-06 9E-11 88.6 14.9 120 331-493 25-169 (325)
210 COG2607 Predicted ATPase (AAA+ 98.4 5E-06 1.1E-10 84.0 14.6 172 278-550 61-236 (287)
211 KOG0480 DNA replication licens 98.4 1E-06 2.3E-11 98.2 10.4 141 271-446 339-479 (764)
212 PRK04132 replication factor C 98.4 1E-06 2.2E-11 103.1 10.5 122 326-492 560-691 (846)
213 KOG0736 Peroxisome assembly fa 98.4 9.8E-07 2.1E-11 100.2 9.9 135 331-494 432-567 (953)
214 PRK12422 chromosomal replicati 98.4 1E-06 2.2E-11 97.0 9.9 85 331-434 142-229 (445)
215 KOG1942 DNA helicase, TBP-inte 98.4 6E-06 1.3E-10 85.4 14.5 61 278-365 39-101 (456)
216 PRK08769 DNA polymerase III su 98.4 4.1E-06 8.9E-11 88.4 13.7 122 331-493 27-175 (319)
217 PRK06620 hypothetical protein; 98.4 3.5E-06 7.7E-11 83.9 12.0 26 331-356 45-70 (214)
218 PRK12377 putative replication 98.4 1.1E-06 2.4E-11 89.6 8.5 83 331-435 102-191 (248)
219 PRK14087 dnaA chromosomal repl 98.3 2.9E-06 6.4E-11 93.4 11.8 87 331-434 142-233 (450)
220 COG4650 RtcR Sigma54-dependent 98.3 1.1E-06 2.3E-11 90.9 7.4 127 331-483 209-345 (531)
221 PRK06964 DNA polymerase III su 98.3 3.4E-06 7.4E-11 89.8 11.1 64 394-494 131-195 (342)
222 KOG0990 Replication factor C, 98.3 2.4E-06 5.2E-11 89.2 8.6 86 331-435 63-157 (360)
223 COG5271 MDN1 AAA ATPase contai 98.3 1.4E-06 3E-11 104.2 7.2 123 331-468 889-1015(4600)
224 PRK06090 DNA polymerase III su 98.2 1.8E-05 3.8E-10 83.7 14.6 122 331-494 26-171 (319)
225 TIGR00602 rad24 checkpoint pro 98.2 4.3E-06 9.4E-11 95.4 10.6 54 278-359 85-139 (637)
226 PRK07993 DNA polymerase III su 98.2 1E-05 2.2E-10 85.9 12.9 122 331-494 25-171 (334)
227 TIGR03015 pepcterm_ATPase puta 98.2 2.3E-05 5.1E-10 79.1 14.8 25 331-355 44-68 (269)
228 KOG0741 AAA+-type ATPase [Post 98.2 7.9E-06 1.7E-10 89.9 11.6 92 331-434 539-633 (744)
229 KOG0058 Peptide exporter, ABC 98.2 3.2E-06 7E-11 96.0 8.7 139 317-471 480-682 (716)
230 PRK08116 hypothetical protein; 98.2 3.2E-06 6.9E-11 87.1 7.9 86 331-435 115-206 (268)
231 PRK08699 DNA polymerase III su 98.2 1.4E-05 3E-10 84.7 12.0 125 331-494 22-176 (325)
232 PF13401 AAA_22: AAA domain; P 98.2 3E-06 6.4E-11 76.0 5.8 37 331-367 5-49 (131)
233 PRK06526 transposase; Provisio 98.1 1.9E-06 4.1E-11 88.2 4.0 89 327-434 95-186 (254)
234 KOG0477 DNA replication licens 98.1 4E-06 8.6E-11 93.4 6.6 155 271-469 443-598 (854)
235 PF06309 Torsin: Torsin; Inte 98.1 6.6E-06 1.4E-10 75.7 7.0 63 266-354 14-77 (127)
236 PF13173 AAA_14: AAA domain 98.1 1.1E-05 2.4E-10 73.3 8.3 70 331-408 3-74 (128)
237 PRK09087 hypothetical protein; 98.1 1.1E-05 2.3E-10 81.2 8.8 28 331-358 45-72 (226)
238 PRK07952 DNA replication prote 98.1 8.5E-06 1.9E-10 83.0 7.8 86 331-435 100-190 (244)
239 PRK08181 transposase; Validate 98.0 4.1E-06 8.9E-11 86.5 4.7 86 330-434 106-194 (269)
240 KOG0482 DNA replication licens 98.0 5.5E-06 1.2E-10 90.6 5.6 140 269-447 334-477 (721)
241 PRK09183 transposase/IS protei 98.0 6E-06 1.3E-10 84.6 5.0 94 323-434 95-191 (259)
242 PF01637 Arch_ATPase: Archaeal 98.0 3.7E-05 7.9E-10 74.7 10.1 24 331-354 21-44 (234)
243 KOG0481 DNA replication licens 98.0 7.9E-06 1.7E-10 89.5 5.1 141 271-446 325-465 (729)
244 PRK06835 DNA replication prote 97.9 2.4E-05 5.3E-10 83.0 8.0 86 331-435 184-274 (329)
245 KOG2227 Pre-initiation complex 97.9 0.0001 2.3E-09 80.4 12.0 173 277-555 150-340 (529)
246 COG1116 TauB ABC-type nitrate/ 97.9 4.1E-05 8.8E-10 77.8 7.9 37 318-354 16-53 (248)
247 PF01695 IstB_IS21: IstB-like 97.8 2.1E-05 4.6E-10 76.2 4.9 82 331-434 48-135 (178)
248 KOG0055 Multidrug/pheromone ex 97.8 8.5E-05 1.8E-09 89.1 10.3 137 316-468 1001-1201(1228)
249 COG1484 DnaC DNA replication p 97.8 6.8E-05 1.5E-09 76.8 8.2 72 330-410 105-182 (254)
250 PF00910 RNA_helicase: RNA hel 97.8 8.9E-05 1.9E-09 65.7 7.9 23 333-355 1-23 (107)
251 PRK06921 hypothetical protein; 97.8 5.1E-05 1.1E-09 78.2 6.8 35 331-365 118-156 (266)
252 KOG2680 DNA helicase TIP49, TB 97.7 0.00021 4.6E-09 74.4 11.1 62 278-366 41-104 (454)
253 KOG0056 Heavy metal exporter H 97.7 0.00013 2.9E-09 80.0 10.0 138 316-469 549-750 (790)
254 PRK05917 DNA polymerase III su 97.7 8.2E-05 1.8E-09 77.6 8.2 86 331-435 20-121 (290)
255 KOG1514 Origin recognition com 97.7 0.00019 4.1E-09 81.6 11.5 110 332-476 424-557 (767)
256 PRK07276 DNA polymerase III su 97.7 0.00033 7.2E-09 73.2 12.4 120 331-489 25-162 (290)
257 PF12775 AAA_7: P-loop contain 97.7 9.3E-05 2E-09 76.5 8.2 139 331-494 34-184 (272)
258 COG2274 SunT ABC-type bacterio 97.7 6.9E-05 1.5E-09 86.8 7.6 38 317-354 485-523 (709)
259 COG0464 SpoVK ATPases of the A 97.7 0.00011 2.4E-09 81.5 8.7 134 330-493 18-153 (494)
260 PF05729 NACHT: NACHT domain 97.7 0.00087 1.9E-08 61.7 13.1 23 332-354 2-24 (166)
261 KOG2035 Replication factor C, 97.7 0.00029 6.2E-09 72.8 10.5 90 331-435 35-153 (351)
262 KOG0055 Multidrug/pheromone ex 97.6 0.00014 3.1E-09 87.2 9.4 51 317-367 365-418 (1228)
263 COG0593 DnaA ATPase involved i 97.6 0.00034 7.4E-09 76.1 11.5 71 331-410 114-190 (408)
264 KOG0479 DNA replication licens 97.6 0.00024 5.3E-09 79.1 10.1 194 271-553 295-497 (818)
265 PF03215 Rad17: Rad17 cell cyc 97.6 0.00024 5.2E-09 79.8 10.3 32 331-362 46-77 (519)
266 PF12774 AAA_6: Hydrolytic ATP 97.6 0.00013 2.9E-09 73.8 7.3 66 332-410 34-99 (231)
267 PRK08939 primosomal protein Dn 97.6 0.00019 4.2E-09 75.4 8.4 36 331-366 157-195 (306)
268 PRK05818 DNA polymerase III su 97.6 0.00053 1.2E-08 70.5 11.3 121 330-490 7-147 (261)
269 COG1125 OpuBA ABC-type proline 97.6 0.00037 8E-09 71.4 9.8 49 317-365 13-64 (309)
270 cd01120 RecA-like_NTPases RecA 97.6 0.00033 7.1E-09 63.9 8.4 33 333-365 2-37 (165)
271 COG4608 AppF ABC-type oligopep 97.5 0.00022 4.7E-09 73.4 7.6 37 319-355 27-64 (268)
272 PRK07132 DNA polymerase III su 97.5 0.0014 3E-08 68.8 13.7 83 331-435 19-116 (299)
273 KOG1808 AAA ATPase containing 97.5 0.00013 2.9E-09 90.4 6.7 123 331-467 441-566 (1856)
274 PF13207 AAA_17: AAA domain; P 97.5 0.00012 2.6E-09 65.0 4.0 30 333-362 2-31 (121)
275 COG1132 MdlB ABC-type multidru 97.4 0.00037 8.1E-09 78.6 8.4 40 317-356 341-381 (567)
276 PF05621 TniB: Bacterial TniB 97.4 0.0014 3E-08 68.8 11.8 72 268-365 25-105 (302)
277 PRK11174 cysteine/glutathione 97.4 0.00024 5.1E-09 80.4 6.6 37 318-354 363-400 (588)
278 TIGR02868 CydC thiol reductant 97.4 0.00032 6.9E-09 78.4 7.1 37 318-354 348-385 (529)
279 KOG3347 Predicted nucleotide k 97.3 0.0034 7.4E-08 59.7 11.6 31 331-361 8-38 (176)
280 cd01128 rho_factor Transcripti 97.2 0.00073 1.6E-08 69.2 7.5 26 331-356 17-42 (249)
281 PRK00131 aroK shikimate kinase 97.2 0.00035 7.7E-09 65.4 4.6 31 330-360 4-34 (175)
282 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.00045 9.7E-09 64.4 4.8 36 319-354 14-50 (144)
283 TIGR03375 type_I_sec_LssB type 97.2 0.0008 1.7E-08 77.8 7.7 37 318-354 478-515 (694)
284 KOG1051 Chaperone HSP104 and r 97.2 0.0036 7.8E-08 73.8 13.0 76 331-410 209-295 (898)
285 COG4525 TauB ABC-type taurine 97.1 0.002 4.2E-08 64.0 8.9 36 319-354 19-55 (259)
286 TIGR01618 phage_P_loop phage n 97.1 0.0023 5E-08 64.5 9.4 22 330-351 12-33 (220)
287 PLN03130 ABC transporter C fam 97.1 0.0011 2.3E-08 83.6 8.6 37 318-354 1252-1289(1622)
288 PRK08118 topology modulation p 97.1 0.00045 9.7E-09 66.2 4.0 32 332-363 3-34 (167)
289 PLN03232 ABC transporter C fam 97.1 0.0011 2.5E-08 83.0 8.5 37 318-354 1249-1286(1495)
290 PTZ00265 multidrug resistance 97.1 0.0011 2.3E-08 82.9 7.9 38 319-356 1182-1220(1466)
291 COG5265 ATM1 ABC-type transpor 97.1 0.0028 6.1E-08 68.9 10.0 138 316-469 274-475 (497)
292 PRK13947 shikimate kinase; Pro 97.1 0.00059 1.3E-08 64.4 4.3 31 332-362 3-33 (171)
293 PRK09376 rho transcription ter 97.1 0.0012 2.7E-08 71.6 7.2 83 330-412 169-273 (416)
294 PRK15455 PrkA family serine pr 97.1 0.00084 1.8E-08 75.8 6.1 60 278-363 77-137 (644)
295 PHA00729 NTP-binding motif con 97.1 0.00077 1.7E-08 68.1 5.3 25 331-355 18-42 (226)
296 TIGR01193 bacteriocin_ABC ABC- 97.0 0.0015 3.2E-08 75.8 8.3 38 317-354 486-524 (708)
297 PRK03839 putative kinase; Prov 97.0 0.00064 1.4E-08 65.1 4.1 31 332-362 2-32 (180)
298 PRK10536 hypothetical protein; 97.0 0.0056 1.2E-07 63.1 11.1 23 331-353 75-97 (262)
299 PF13604 AAA_30: AAA domain; P 97.0 0.0077 1.7E-07 59.1 11.7 89 331-434 19-118 (196)
300 TIGR03796 NHPM_micro_ABC1 NHPM 97.0 0.0015 3.3E-08 75.6 7.7 37 318-354 492-529 (710)
301 TIGR00957 MRP_assoc_pro multi 97.0 0.0018 3.9E-08 81.4 8.6 38 318-355 1299-1337(1522)
302 cd00464 SK Shikimate kinase (S 97.0 0.00084 1.8E-08 61.8 4.4 31 332-362 1-31 (154)
303 PRK11176 lipid transporter ATP 97.0 0.0023 5.1E-08 72.2 8.8 37 318-354 356-393 (582)
304 COG1120 FepC ABC-type cobalami 97.0 0.0007 1.5E-08 69.6 4.1 39 317-355 14-53 (258)
305 TIGR01846 type_I_sec_HlyB type 96.9 0.0025 5.5E-08 73.8 8.9 37 318-354 470-507 (694)
306 TIGR00767 rho transcription te 96.9 0.0021 4.5E-08 70.0 7.6 33 323-355 160-193 (415)
307 TIGR03797 NHPM_micro_ABC2 NHPM 96.9 0.0019 4.2E-08 74.6 8.0 38 317-354 465-503 (686)
308 COG4618 ArpD ABC-type protease 96.9 0.0018 4E-08 71.6 7.2 102 265-368 289-402 (580)
309 KOG0054 Multidrug resistance-a 96.9 0.0034 7.4E-08 77.1 10.2 138 315-468 1150-1350(1381)
310 COG1134 TagH ABC-type polysacc 96.9 0.0023 5E-08 65.1 7.3 40 316-355 38-78 (249)
311 PRK00625 shikimate kinase; Pro 96.9 0.00091 2E-08 64.7 4.3 31 332-362 2-32 (173)
312 PRK13657 cyclic beta-1,2-gluca 96.9 0.0019 4.1E-08 73.2 7.5 37 318-354 348-385 (588)
313 PHA02774 E1; Provisional 96.9 0.0033 7.1E-08 71.1 9.0 76 331-440 435-511 (613)
314 COG3854 SpoIIIAA ncharacterize 96.9 0.0045 9.8E-08 62.8 9.1 77 331-408 138-231 (308)
315 PF03266 NTPase_1: NTPase; In 96.9 0.0016 3.4E-08 62.8 5.7 23 332-354 1-23 (168)
316 COG1124 DppF ABC-type dipeptid 96.9 0.00067 1.5E-08 68.9 3.1 36 319-354 21-57 (252)
317 COG1126 GlnQ ABC-type polar am 96.9 0.00068 1.5E-08 68.0 3.0 48 317-364 14-64 (240)
318 PRK07261 topology modulation p 96.9 0.0017 3.7E-08 62.3 5.7 34 332-365 2-35 (171)
319 PF13671 AAA_33: AAA domain; P 96.9 0.00072 1.6E-08 61.5 2.9 25 333-357 2-26 (143)
320 COG4988 CydD ABC-type transpor 96.8 0.0036 7.9E-08 70.3 8.7 37 319-355 335-372 (559)
321 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.0019 4.1E-08 60.4 5.7 37 319-355 13-50 (157)
322 PRK06217 hypothetical protein; 96.8 0.0012 2.5E-08 63.8 4.3 31 332-362 3-33 (183)
323 TIGR00958 3a01208 Conjugate Tr 96.8 0.0022 4.9E-08 74.6 7.4 37 318-354 494-531 (711)
324 PRK11160 cysteine/glutathione 96.8 0.0026 5.5E-08 72.2 7.7 37 318-354 353-390 (574)
325 PRK14532 adenylate kinase; Pro 96.8 0.0011 2.4E-08 63.8 4.1 29 332-360 2-30 (188)
326 PRK14530 adenylate kinase; Pro 96.8 0.0013 2.8E-08 65.1 4.5 29 331-359 4-32 (215)
327 COG3842 PotA ABC-type spermidi 96.8 0.00078 1.7E-08 72.1 3.0 38 317-354 17-55 (352)
328 PRK10790 putative multidrug tr 96.8 0.0031 6.8E-08 71.5 8.0 48 318-365 354-404 (592)
329 cd03284 ABC_MutS1 MutS1 homolo 96.8 0.0039 8.4E-08 62.3 7.7 33 320-352 20-52 (216)
330 PRK13949 shikimate kinase; Pro 96.8 0.0013 2.8E-08 63.2 4.0 31 332-362 3-33 (169)
331 PRK13948 shikimate kinase; Pro 96.8 0.0016 3.5E-08 63.6 4.7 35 328-362 8-42 (182)
332 KOG0057 Mitochondrial Fe/S clu 96.8 0.0043 9.3E-08 69.3 8.4 53 315-367 362-416 (591)
333 PHA02624 large T antigen; Prov 96.7 0.012 2.7E-07 66.9 12.1 128 331-488 432-560 (647)
334 TIGR02857 CydD thiol reductant 96.7 0.0023 5E-08 71.5 6.3 36 319-354 336-372 (529)
335 cd03222 ABC_RNaseL_inhibitor T 96.7 0.0021 4.5E-08 62.5 5.2 34 320-354 15-49 (177)
336 PTZ00243 ABC transporter; Prov 96.7 0.0029 6.2E-08 79.7 7.7 37 318-354 1323-1360(1560)
337 TIGR01359 UMP_CMP_kin_fam UMP- 96.7 0.0015 3.3E-08 62.3 4.2 31 333-365 2-32 (183)
338 COG1618 Predicted nucleotide k 96.7 0.0043 9.3E-08 59.8 6.8 24 331-354 6-29 (179)
339 PF12780 AAA_8: P-loop contain 96.7 0.0043 9.3E-08 64.2 7.5 68 330-404 31-98 (268)
340 PRK10789 putative multidrug tr 96.7 0.0046 9.9E-08 70.1 8.2 37 318-354 328-365 (569)
341 PF13191 AAA_16: AAA ATPase do 96.7 0.0014 3.1E-08 61.8 3.5 59 279-366 2-63 (185)
342 cd02020 CMPK Cytidine monophos 96.7 0.0018 4E-08 58.9 4.0 30 333-362 2-31 (147)
343 PRK14531 adenylate kinase; Pro 96.7 0.002 4.3E-08 62.3 4.4 30 331-360 3-32 (183)
344 cd01124 KaiC KaiC is a circadi 96.7 0.0045 9.9E-08 58.8 6.9 32 333-364 2-36 (187)
345 PRK05057 aroK shikimate kinase 96.7 0.0021 4.6E-08 61.8 4.6 33 331-363 5-37 (172)
346 COG3839 MalK ABC-type sugar tr 96.6 0.0012 2.6E-08 70.4 3.1 35 320-354 18-53 (338)
347 TIGR01166 cbiO cobalt transpor 96.6 0.0012 2.6E-08 63.8 2.8 37 318-354 5-42 (190)
348 PRK04296 thymidine kinase; Pro 96.6 0.0061 1.3E-07 59.5 7.8 30 332-361 4-36 (190)
349 cd01428 ADK Adenylate kinase ( 96.6 0.0019 4.1E-08 61.9 4.1 28 333-360 2-29 (194)
350 COG0703 AroK Shikimate kinase 96.6 0.0017 3.7E-08 63.0 3.8 32 331-362 3-34 (172)
351 cd02021 GntK Gluconate kinase 96.6 0.0019 4E-08 59.8 3.9 27 333-359 2-28 (150)
352 PF03969 AFG1_ATPase: AFG1-lik 96.6 0.0018 4E-08 69.7 4.4 27 329-355 61-87 (362)
353 TIGR01313 therm_gnt_kin carboh 96.6 0.0017 3.6E-08 61.0 3.6 27 333-359 1-27 (163)
354 TIGR02315 ABC_phnC phosphonate 96.6 0.0013 2.8E-08 65.8 3.0 37 318-354 15-52 (243)
355 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.6 0.0011 2.3E-08 65.4 2.3 36 319-354 18-54 (218)
356 cd02027 APSK Adenosine 5'-phos 96.6 0.0063 1.4E-07 57.1 7.3 34 333-366 2-38 (149)
357 cd03225 ABC_cobalt_CbiO_domain 96.6 0.0013 2.8E-08 64.4 2.6 36 319-354 15-51 (211)
358 TIGR02688 conserved hypothetic 96.6 0.0043 9.4E-08 68.0 6.8 81 330-438 209-293 (449)
359 PF00005 ABC_tran: ABC transpo 96.6 0.00077 1.7E-08 61.1 0.8 34 321-354 1-35 (137)
360 COG0396 sufC Cysteine desulfur 96.6 0.0047 1E-07 62.5 6.4 39 318-356 17-56 (251)
361 TIGR01271 CFTR_protein cystic 96.6 0.0059 1.3E-07 76.7 8.7 38 317-354 1231-1269(1490)
362 PF01583 APS_kinase: Adenylyls 96.5 0.0056 1.2E-07 58.6 6.6 38 331-368 3-43 (156)
363 TIGR02204 MsbA_rel ABC transpo 96.5 0.0067 1.4E-07 68.4 8.3 36 319-354 354-390 (576)
364 TIGR02673 FtsE cell division A 96.5 0.0015 3.2E-08 64.2 2.6 36 319-354 16-52 (214)
365 cd00227 CPT Chloramphenicol (C 96.5 0.0023 4.9E-08 61.3 3.8 34 331-364 3-36 (175)
366 PRK03731 aroL shikimate kinase 96.5 0.0029 6.3E-08 59.9 4.5 32 331-362 3-34 (171)
367 cd03258 ABC_MetN_methionine_tr 96.5 0.0015 3.2E-08 65.1 2.6 36 319-354 19-55 (233)
368 TIGR02203 MsbA_lipidA lipid A 96.5 0.0076 1.7E-07 67.8 8.6 37 318-354 345-382 (571)
369 cd03256 ABC_PhnC_transporter A 96.5 0.0015 3.2E-08 65.3 2.5 36 319-354 15-51 (241)
370 PRK13946 shikimate kinase; Pro 96.5 0.0026 5.7E-08 61.5 4.1 32 331-362 11-42 (184)
371 COG0529 CysC Adenylylsulfate k 96.5 0.0074 1.6E-07 58.9 7.1 38 331-368 24-64 (197)
372 cd03280 ABC_MutS2 MutS2 homolo 96.5 0.0064 1.4E-07 59.5 6.9 31 321-351 17-49 (200)
373 cd03260 ABC_PstB_phosphate_tra 96.5 0.0018 3.9E-08 64.2 3.0 36 319-354 14-50 (227)
374 TIGR03608 L_ocin_972_ABC putat 96.5 0.0016 3.4E-08 63.5 2.5 36 319-354 12-48 (206)
375 PRK15177 Vi polysaccharide exp 96.5 0.0015 3.3E-08 64.7 2.4 35 320-354 2-37 (213)
376 TIGR01360 aden_kin_iso1 adenyl 96.5 0.0029 6.3E-08 60.2 4.3 28 332-359 5-32 (188)
377 cd01131 PilT Pilus retraction 96.5 0.0063 1.4E-07 59.8 6.7 25 331-355 2-26 (198)
378 TIGR00960 3a0501s02 Type II (G 96.5 0.0015 3.2E-08 64.3 2.2 36 319-354 17-53 (216)
379 cd03282 ABC_MSH4_euk MutS4 hom 96.5 0.0069 1.5E-07 60.1 6.9 35 319-353 17-52 (204)
380 cd03261 ABC_Org_Solvent_Resist 96.5 0.0015 3.2E-08 65.3 2.2 36 319-354 14-50 (235)
381 cd03269 ABC_putative_ATPase Th 96.5 0.0014 3.1E-08 64.1 2.1 36 319-354 14-50 (210)
382 cd03262 ABC_HisP_GlnQ_permease 96.5 0.0018 3.9E-08 63.4 2.7 36 319-354 14-50 (213)
383 cd03259 ABC_Carb_Solutes_like 96.4 0.0018 3.9E-08 63.6 2.7 36 319-354 14-50 (213)
384 cd03292 ABC_FtsE_transporter F 96.4 0.0016 3.5E-08 63.8 2.4 36 319-354 15-51 (214)
385 COG4178 ABC-type uncharacteriz 96.4 0.016 3.4E-07 66.1 10.5 36 319-354 407-443 (604)
386 cd03229 ABC_Class3 This class 96.4 0.0016 3.4E-08 62.5 2.2 36 319-354 14-50 (178)
387 cd03301 ABC_MalK_N The N-termi 96.4 0.0018 3.9E-08 63.5 2.6 36 319-354 14-50 (213)
388 cd03263 ABC_subfamily_A The AB 96.4 0.0018 3.9E-08 63.8 2.5 36 319-354 16-52 (220)
389 cd03226 ABC_cobalt_CbiO_domain 96.4 0.0017 3.8E-08 63.4 2.4 36 319-354 14-50 (205)
390 PRK06762 hypothetical protein; 96.4 0.0032 7E-08 59.3 4.1 37 331-367 3-39 (166)
391 PF10923 DUF2791: P-loop Domai 96.4 0.14 3.1E-06 56.2 17.3 105 395-550 239-343 (416)
392 cd03235 ABC_Metallic_Cations A 96.4 0.0017 3.6E-08 63.8 2.2 36 319-354 13-49 (213)
393 PRK14974 cell division protein 96.4 0.021 4.7E-07 61.0 10.6 34 331-364 141-177 (336)
394 COG1117 PstB ABC-type phosphat 96.4 0.0028 6E-08 63.7 3.6 38 317-354 19-57 (253)
395 KOG2543 Origin recognition com 96.4 0.05 1.1E-06 58.8 13.1 63 274-365 3-65 (438)
396 cd03293 ABC_NrtD_SsuB_transpor 96.4 0.0018 3.9E-08 64.0 2.2 36 319-354 18-54 (220)
397 cd03228 ABCC_MRP_Like The MRP 96.4 0.0024 5.1E-08 60.9 2.9 36 319-354 16-52 (171)
398 PF07693 KAP_NTPase: KAP famil 96.4 0.027 5.8E-07 58.5 11.1 27 331-357 21-47 (325)
399 TIGR01192 chvA glucan exporter 96.4 0.0074 1.6E-07 68.7 7.4 36 319-354 349-385 (585)
400 cd03264 ABC_drug_resistance_li 96.4 0.0019 4.2E-08 63.3 2.4 36 319-354 14-49 (211)
401 PRK10247 putative ABC transpor 96.4 0.0022 4.7E-08 63.9 2.8 36 319-354 21-57 (225)
402 cd03219 ABC_Mj1267_LivG_branch 96.4 0.0019 4.1E-08 64.3 2.3 36 319-354 14-50 (236)
403 cd03218 ABC_YhbG The ABC trans 96.4 0.0022 4.7E-08 63.8 2.7 36 319-354 14-50 (232)
404 PRK14247 phosphate ABC transpo 96.3 0.0023 4.9E-08 64.5 2.8 36 319-354 17-53 (250)
405 PRK00771 signal recognition pa 96.3 0.029 6.3E-07 62.0 11.7 37 330-366 95-134 (437)
406 PTZ00088 adenylate kinase 1; P 96.3 0.0038 8.3E-08 63.1 4.4 30 331-360 7-36 (229)
407 cd03296 ABC_CysA_sulfate_impor 96.3 0.002 4.3E-08 64.6 2.4 36 319-354 16-52 (239)
408 TIGR03410 urea_trans_UrtE urea 96.3 0.002 4.3E-08 64.0 2.4 36 319-354 14-50 (230)
409 cd03257 ABC_NikE_OppD_transpor 96.3 0.0022 4.8E-08 63.4 2.7 36 319-354 19-55 (228)
410 TIGR02211 LolD_lipo_ex lipopro 96.3 0.002 4.2E-08 63.6 2.3 36 319-354 19-55 (221)
411 cd03224 ABC_TM1139_LivF_branch 96.3 0.0019 4E-08 63.7 2.1 36 319-354 14-50 (222)
412 PF13238 AAA_18: AAA domain; P 96.3 0.003 6.5E-08 55.9 3.2 22 333-354 1-22 (129)
413 cd03238 ABC_UvrA The excision 96.3 0.0026 5.6E-08 61.7 3.0 34 319-352 9-43 (176)
414 COG4175 ProV ABC-type proline/ 96.3 0.0071 1.5E-07 63.9 6.3 35 320-354 43-78 (386)
415 PF05272 VirE: Virulence-assoc 96.3 0.011 2.5E-07 58.4 7.5 98 332-471 54-151 (198)
416 cd03247 ABCC_cytochrome_bd The 96.3 0.0023 5.1E-08 61.3 2.6 36 319-354 16-52 (178)
417 PRK11629 lolD lipoprotein tran 96.3 0.002 4.4E-08 64.2 2.2 36 319-354 23-59 (233)
418 PRK11264 putative amino-acid A 96.3 0.0025 5.4E-08 64.2 2.8 36 319-354 17-53 (250)
419 PRK02496 adk adenylate kinase; 96.3 0.0039 8.5E-08 59.9 4.1 28 332-359 3-30 (184)
420 PRK14528 adenylate kinase; Pro 96.3 0.0042 9E-08 60.4 4.3 29 332-360 3-31 (186)
421 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.3 0.0025 5.5E-08 63.6 2.8 36 319-354 17-53 (238)
422 cd03245 ABCC_bacteriocin_expor 96.3 0.0026 5.7E-08 62.7 2.9 36 319-354 18-54 (220)
423 PRK08154 anaerobic benzoate ca 96.3 0.0062 1.4E-07 64.0 5.8 32 331-362 134-165 (309)
424 PRK10584 putative ABC transpor 96.3 0.0023 5E-08 63.5 2.5 35 320-354 25-60 (228)
425 PRK11022 dppD dipeptide transp 96.3 0.0021 4.5E-08 68.1 2.3 37 319-355 21-58 (326)
426 cd03265 ABC_DrrA DrrA is the A 96.3 0.0024 5.3E-08 63.1 2.6 36 319-354 14-50 (220)
427 cd00820 PEPCK_HprK Phosphoenol 96.3 0.0026 5.6E-08 57.2 2.5 33 319-351 3-36 (107)
428 TIGR02770 nickel_nikD nickel i 96.3 0.0028 6E-08 63.2 3.0 35 321-355 2-37 (230)
429 cd03251 ABCC_MsbA MsbA is an e 96.3 0.0026 5.7E-08 63.2 2.8 36 319-354 16-52 (234)
430 TIGR01978 sufC FeS assembly AT 96.3 0.0029 6.3E-08 63.2 3.1 36 319-354 14-50 (243)
431 COG1102 Cmk Cytidylate kinase 96.3 0.0039 8.5E-08 60.0 3.8 37 520-556 137-173 (179)
432 PRK14722 flhF flagellar biosyn 96.3 0.031 6.6E-07 60.6 11.0 24 331-354 138-161 (374)
433 KOG1968 Replication factor C, 96.3 0.0057 1.2E-07 72.5 5.9 76 332-409 359-442 (871)
434 TIGR03864 PQQ_ABC_ATP ABC tran 96.3 0.0023 4.9E-08 64.0 2.3 36 319-354 15-51 (236)
435 PRK11124 artP arginine transpo 96.3 0.0024 5.2E-08 64.0 2.4 36 319-354 16-52 (242)
436 cd03234 ABCG_White The White s 96.2 0.0031 6.7E-08 62.7 3.1 38 318-355 20-58 (226)
437 PRK14267 phosphate ABC transpo 96.2 0.0028 6E-08 64.0 2.7 36 319-354 18-54 (253)
438 PRK14273 phosphate ABC transpo 96.2 0.0031 6.6E-08 63.8 3.1 37 319-355 21-58 (254)
439 PRK14256 phosphate ABC transpo 96.2 0.0029 6.4E-08 63.9 2.9 36 319-354 18-54 (252)
440 cd03244 ABCC_MRP_domain2 Domai 96.2 0.0031 6.6E-08 62.2 3.0 36 319-354 18-54 (221)
441 PRK10908 cell division protein 96.2 0.0025 5.4E-08 63.1 2.3 36 319-354 16-52 (222)
442 cd03254 ABCC_Glucan_exporter_l 96.2 0.003 6.4E-08 62.7 2.8 36 319-354 17-53 (229)
443 PRK13538 cytochrome c biogenes 96.2 0.0027 5.8E-08 62.2 2.5 36 319-354 15-51 (204)
444 cd03250 ABCC_MRP_domain1 Domai 96.2 0.003 6.4E-08 61.7 2.7 36 319-354 19-55 (204)
445 cd03266 ABC_NatA_sodium_export 96.2 0.0027 5.8E-08 62.5 2.5 36 319-354 19-55 (218)
446 PRK11248 tauB taurine transpor 96.2 0.0025 5.5E-08 64.9 2.3 36 319-354 15-51 (255)
447 cd03246 ABCC_Protease_Secretio 96.2 0.0033 7.2E-08 60.0 3.0 36 319-354 16-52 (173)
448 PF13245 AAA_19: Part of AAA d 96.2 0.0078 1.7E-07 50.6 4.9 24 331-354 11-35 (76)
449 PRK14242 phosphate transporter 96.2 0.0033 7.2E-08 63.4 3.2 36 319-354 20-56 (253)
450 cd03223 ABCD_peroxisomal_ALDP 96.2 0.0031 6.6E-08 60.1 2.7 36 319-354 15-51 (166)
451 cd03230 ABC_DR_subfamily_A Thi 96.2 0.0026 5.7E-08 60.7 2.3 36 319-354 14-50 (173)
452 TIGR03005 ectoine_ehuA ectoine 96.2 0.0025 5.4E-08 64.4 2.2 36 319-354 14-50 (252)
453 PRK10744 pstB phosphate transp 96.2 0.003 6.5E-08 64.3 2.8 36 319-354 27-63 (260)
454 TIGR01526 nadR_NMN_Atrans nico 96.2 0.0084 1.8E-07 63.6 6.2 35 331-365 163-197 (325)
455 PRK14253 phosphate ABC transpo 96.2 0.0037 8E-08 63.0 3.4 37 319-355 17-54 (249)
456 cd03252 ABCC_Hemolysin The ABC 96.2 0.003 6.5E-08 63.0 2.7 36 319-354 16-52 (237)
457 cd03215 ABC_Carb_Monos_II This 96.2 0.0028 6E-08 61.0 2.4 35 320-354 15-50 (182)
458 PRK09493 glnQ glutamine ABC tr 96.2 0.0028 6E-08 63.5 2.4 36 319-354 15-51 (240)
459 cd03268 ABC_BcrA_bacitracin_re 96.2 0.0028 6E-08 62.0 2.4 36 319-354 14-50 (208)
460 TIGR02324 CP_lyasePhnL phospho 96.2 0.0029 6.3E-08 62.6 2.5 36 319-354 22-58 (224)
461 COG0563 Adk Adenylate kinase a 96.2 0.0052 1.1E-07 59.8 4.1 27 332-358 2-28 (178)
462 smart00534 MUTSac ATPase domai 96.2 0.011 2.5E-07 57.2 6.5 19 333-351 2-20 (185)
463 PRK14274 phosphate ABC transpo 96.2 0.0034 7.4E-08 63.7 3.0 37 319-355 26-63 (259)
464 cd03295 ABC_OpuCA_Osmoprotecti 96.2 0.0029 6.2E-08 63.6 2.4 36 319-354 15-51 (242)
465 TIGR00972 3a0107s01c2 phosphat 96.1 0.0032 7E-08 63.4 2.7 36 319-354 15-51 (247)
466 TIGR01351 adk adenylate kinase 96.1 0.0051 1.1E-07 60.6 4.1 28 333-360 2-29 (210)
467 COG1136 SalX ABC-type antimicr 96.1 0.0039 8.5E-08 63.0 3.2 48 318-365 18-68 (226)
468 PRK13539 cytochrome c biogenes 96.1 0.003 6.6E-08 62.0 2.4 36 319-354 16-52 (207)
469 cd03290 ABCC_SUR1_N The SUR do 96.1 0.0034 7.4E-08 61.9 2.8 37 318-354 14-51 (218)
470 PRK13540 cytochrome c biogenes 96.1 0.0031 6.6E-08 61.6 2.4 36 319-354 15-51 (200)
471 PRK12608 transcription termina 96.1 0.013 2.8E-07 63.4 7.3 24 331-354 134-157 (380)
472 COG1121 ZnuC ABC-type Mn/Zn tr 96.1 0.0032 7E-08 64.6 2.6 36 319-354 18-54 (254)
473 TIGR03574 selen_PSTK L-seryl-t 96.1 0.012 2.6E-07 59.5 6.7 34 333-366 2-38 (249)
474 TIGR01189 ccmA heme ABC export 96.1 0.003 6.5E-08 61.5 2.2 36 319-354 14-50 (198)
475 TIGR01188 drrA daunorubicin re 96.1 0.0029 6.3E-08 66.0 2.3 36 319-354 7-43 (302)
476 TIGR02237 recomb_radB DNA repa 96.1 0.012 2.7E-07 57.4 6.5 34 332-365 14-50 (209)
477 cd03369 ABCC_NFT1 Domain 2 of 96.1 0.0042 9.1E-08 60.8 3.2 36 319-354 22-58 (207)
478 TIGR01425 SRP54_euk signal rec 96.1 0.06 1.3E-06 59.4 12.4 36 331-366 101-139 (429)
479 TIGR01184 ntrCD nitrate transp 96.1 0.0037 7.9E-08 62.5 2.8 34 321-354 1-35 (230)
480 cd03232 ABC_PDR_domain2 The pl 96.1 0.0037 8E-08 60.8 2.8 35 319-353 21-56 (192)
481 cd03253 ABCC_ATM1_transporter 96.1 0.0035 7.6E-08 62.4 2.7 36 319-354 15-51 (236)
482 cd03248 ABCC_TAP TAP, the Tran 96.1 0.004 8.6E-08 61.7 3.1 36 319-354 28-64 (226)
483 PRK14262 phosphate ABC transpo 96.1 0.0034 7.5E-08 63.2 2.6 36 319-354 17-53 (250)
484 PRK14248 phosphate ABC transpo 96.1 0.0039 8.5E-08 63.7 3.1 37 318-354 34-71 (268)
485 cd03214 ABC_Iron-Siderophores_ 96.1 0.0033 7.2E-08 60.4 2.4 36 319-354 13-49 (180)
486 PRK14250 phosphate ABC transpo 96.1 0.0032 7E-08 63.3 2.4 36 319-354 17-53 (241)
487 PRK10895 lipopolysaccharide AB 96.1 0.0031 6.6E-08 63.2 2.2 36 319-354 17-53 (241)
488 cd03233 ABC_PDR_domain1 The pl 96.1 0.0032 6.9E-08 61.8 2.3 38 318-355 20-58 (202)
489 PRK00279 adk adenylate kinase; 96.1 0.0061 1.3E-07 60.3 4.3 29 332-360 2-30 (215)
490 PRK13645 cbiO cobalt transport 96.1 0.0032 7E-08 65.1 2.4 36 319-354 25-61 (289)
491 PRK06547 hypothetical protein; 96.1 0.006 1.3E-07 59.0 4.1 30 331-360 16-45 (172)
492 PRK14240 phosphate transporter 96.1 0.0038 8.2E-08 62.9 2.9 36 319-354 17-53 (250)
493 PRK11247 ssuB aliphatic sulfon 96.1 0.0033 7.1E-08 64.3 2.4 36 319-354 26-62 (257)
494 cd03216 ABC_Carb_Monos_I This 96.1 0.0031 6.8E-08 59.8 2.1 36 319-354 14-50 (163)
495 PRK13648 cbiO cobalt transport 96.1 0.0035 7.6E-08 64.1 2.6 36 319-354 23-59 (269)
496 TIGR02323 CP_lyasePhnK phospho 96.1 0.0033 7.2E-08 63.4 2.4 36 319-354 17-53 (253)
497 PRK13649 cbiO cobalt transport 96.1 0.0033 7.1E-08 64.7 2.4 36 319-354 21-57 (280)
498 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.1 0.003 6.6E-08 62.9 2.0 37 318-354 35-72 (224)
499 PRK14241 phosphate transporter 96.1 0.0037 7.9E-08 63.5 2.7 36 319-354 18-54 (258)
500 PRK14237 phosphate transporter 96.1 0.0038 8.3E-08 63.9 2.8 36 319-354 34-70 (267)
No 1
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-54 Score=449.85 Aligned_cols=362 Identities=60% Similarity=0.896 Sum_probs=299.3
Q ss_pred cccCCCCCCCCCCCCCcceeecCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHhhhcccccChHHHHH
Q 008176 209 TSSYGDPPEVWQPPGDGIAVRVNG-QGPNLVRGGGSGSGFGSGSKDGCWGGSNLGNKFPTPKEICKGLDKFVIGQERAKK 287 (575)
Q Consensus 209 ~~s~~~p~~~~~~~g~g~~vr~~~-~~~~~~~gg~g~~~~g~~~~~~~~~~~~~~~~~~t~~el~~~Ld~~VvGqd~ak~ 287 (575)
-+|..++++.|.+ ++++..++-. +--......+. ..+.. ....|.+..-....++|++++++||++||||+.||+
T Consensus 80 ~~s~~~~~~t~~~-s~~f~~~k~~~sfv~~~~~~~~--~~~~~-~p~~~~gg~~~k~~P~PkeI~~~Ldk~VVGQe~AKK 155 (564)
T KOG0745|consen 80 CTSQCTPLETFVS-SQGFILCKCNKSFVVLYEADGA--KPGKL-SPSNRDGGFQLKPPPTPKEICEYLDKFVVGQEKAKK 155 (564)
T ss_pred ccccCCchhhccC-CCCeEEeeccchhhhhhhcccC--CCCCC-CccccccccccCCCCChHHHHHHhhhheechhhhhh
Confidence 4566788888855 5666555211 11111111111 11111 112222333334789999999999999999999999
Q ss_pred HHHHHHHhhhhhHhh--hhhcccccCCCCCC------------------------CCCCCCCC--cccccCccEEEEcCC
Q 008176 288 VLSVAVYNHYMRIYN--ESSQKRSAGESSSC------------------------TTDGVDDD--TVELEKSNILLMGPT 339 (575)
Q Consensus 288 ~L~~al~~~~~r~~~--~~~~~~~~~~~~~~------------------------~~~~l~~i--~v~i~~~~VLL~GPp 339 (575)
.|..+||+||+|+++ ..+++..++.+... -.++++.. ++++.+.+|||.||+
T Consensus 156 vLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~~~ld~~~~dv~LeKSNvLllGPt 235 (564)
T KOG0745|consen 156 VLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIAKALDEDDEDVELEKSNVLLLGPT 235 (564)
T ss_pred eeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchhcccccccccceeeecccEEEECCC
Confidence 999999999999999 33333322221110 12344444 788999999999999
Q ss_pred CCChHHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCC
Q 008176 340 GSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRD 419 (575)
Q Consensus 340 GTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~ 419 (575)
|+|||.||+.||+.++.||...||+.++++||+|++++..+.+++..|.+++++++.+||||||+|++..+....+...|
T Consensus 236 GsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RD 315 (564)
T KOG0745|consen 236 GSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTSRD 315 (564)
T ss_pred CCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888888899
Q ss_pred cchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchh----hhh
Q 008176 420 VSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVR----ANM 495 (575)
Q Consensus 420 ~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~----e~~ 495 (575)
.++|+||++||+++||+.|+||+++.+++.+++.++|||+||+|||.|+|.+||+.+.+|+.+..+||+.|.. .++
T Consensus 316 VsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~~~ 395 (564)
T KOG0745|consen 316 VSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRANM 395 (564)
T ss_pred ccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCCCccchhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999944 444
Q ss_pred cc-CCCChHH-HHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHhhCCCeEEe
Q 008176 496 RA-GGVTDAV-VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVSASV 573 (575)
Q Consensus 496 ~~-~~l~~~~-~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~~~~~~~~~~i~l~~ 573 (575)
.. ....... ...++++.++..||+++|+.|||++||+++++|..|++++|++|++|+.|+|++||+++|++++++|+|
T Consensus 396 ~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L~f 475 (564)
T KOG0745|consen 396 ATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVELHF 475 (564)
T ss_pred ccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHhccCCeeEEe
Confidence 33 2333333 345699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 008176 574 S 574 (575)
Q Consensus 574 ~ 574 (575)
|
T Consensus 476 T 476 (564)
T KOG0745|consen 476 T 476 (564)
T ss_pred c
Confidence 7
No 2
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-53 Score=427.63 Aligned_cols=289 Identities=62% Similarity=1.000 Sum_probs=271.1
Q ss_pred CCCCChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCC
Q 008176 263 NKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSG 342 (575)
Q Consensus 263 ~~~~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTG 342 (575)
...++|+++++.||++||||++||+.|..+|+|||+|+..... ..++++.+.++||+||+|||
T Consensus 47 ~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~-----------------~~dvEL~KSNILLiGPTGsG 109 (408)
T COG1219 47 SELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKED-----------------NDDVELSKSNILLIGPTGSG 109 (408)
T ss_pred ccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCC-----------------CCceeeeeccEEEECCCCCc
Confidence 3689999999999999999999999999999999999876532 12477888999999999999
Q ss_pred hHHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcch
Q 008176 343 KTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (575)
Q Consensus 343 KTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~ 422 (575)
||.||+.+|+.++.||...|++.++++||+|+++++.+.+++..++++++.+..|||||||||+++.+.+..++..|.++
T Consensus 110 KTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSG 189 (408)
T COG1219 110 KTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSG 189 (408)
T ss_pred HHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred HHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhhccCCCCh
Q 008176 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (575)
Q Consensus 423 e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~~~~~l~~ 502 (575)
|+||++||++|||+..+||.+|.++|++.+.+.+||+|++|||+|+|..+++.+..|.....|||+...... ..
T Consensus 190 EGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~------~~ 263 (408)
T COG1219 190 EGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSK------SK 263 (408)
T ss_pred hHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccch------hh
Confidence 999999999999999999999999999999999999999999999999999999999999999999886542 12
Q ss_pred HHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHhhCCCeEEeC
Q 008176 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVSASVS 574 (575)
Q Consensus 503 ~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~~~~~~~~~~i~l~~~ 574 (575)
......+++.++++||+++|+.|||++|++.+..+++|++++|.+||.++.|++.|||.++|++.|++|+|+
T Consensus 264 ~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~ 335 (408)
T COG1219 264 KKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFT 335 (408)
T ss_pred hhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEc
Confidence 234578999999999999999999999999999999999999999999999999999999999999999997
No 3
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=100.00 E-value=2e-40 Score=356.55 Aligned_cols=288 Identities=63% Similarity=1.001 Sum_probs=252.7
Q ss_pred CCChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChH
Q 008176 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (575)
Q Consensus 265 ~~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKT 344 (575)
.++|+++.+.|+++|+||++||+.|..++++||+++....... ..+..+.+++||+||||||||
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~----------------~~~~~~~~~iLl~Gp~GtGKT 122 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKD----------------DDVELQKSNILLIGPTGSGKT 122 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccc----------------cccccCCceEEEEcCCCCCHH
Confidence 7899999999999999999999999999999999875432210 123345689999999999999
Q ss_pred HHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHH
Q 008176 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (575)
Q Consensus 345 tLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~ 424 (575)
++|+++|+.++.+|+.++++.+.+.+|+|++.+..+..++..+.+.+..+.++||||||||++..++...+...|.++++
T Consensus 123 ~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~ 202 (412)
T PRK05342 123 LLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEG 202 (412)
T ss_pred HHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHH
Confidence 99999999999999999999998889999988888877777666666677899999999999998766566678899999
Q ss_pred HHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhhccCCCChHH
Q 008176 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (575)
Q Consensus 425 vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~ 504 (575)
+|++||++|||..+.+|+.+.+.+++.+.++|+|+|++|||+|+|..+++.+.+|.....+||....... ....
T Consensus 203 vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~------~~~~ 276 (412)
T PRK05342 203 VQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSK------KEKR 276 (412)
T ss_pred HHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccc------cccc
Confidence 9999999999999999999999999999999999999999999999999999998888899997543211 0011
Q ss_pred HHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHhhCCCeEEeC
Q 008176 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVSASVS 574 (575)
Q Consensus 505 ~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~~~~~~~~~~i~l~~~ 574 (575)
....+++.+..+|+.++||.|||++|++.++.|++|+++++.+|+.++++.++++|++.+..+||+|+|+
T Consensus 277 ~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t 346 (412)
T PRK05342 277 TEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFT 346 (412)
T ss_pred hhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEC
Confidence 1367788899999999999999999999999999999999999999999999999999999999999997
No 4
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=100.00 E-value=3.1e-39 Score=346.56 Aligned_cols=289 Identities=63% Similarity=0.988 Sum_probs=250.4
Q ss_pred CCCChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCCh
Q 008176 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (575)
Q Consensus 264 ~~~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGK 343 (575)
+.++|.++++.|+++|+||++||+.+..++++||+++....... ++..+...++++||+|||||||
T Consensus 64 ~~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~--------------~~~~~~~~~~~iLL~GP~GsGK 129 (413)
T TIGR00382 64 YLPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKK--------------SDNGVELSKSNILLIGPTGSGK 129 (413)
T ss_pred CCCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccc--------------cccccccCCceEEEECCCCcCH
Confidence 36799999999999999999999999999999999875421000 0012344568999999999999
Q ss_pred HHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchH
Q 008176 344 TLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (575)
Q Consensus 344 TtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e 423 (575)
|++|+++|+.++.+|..++++.+.+.+|+|++.+..+...+..+.+.+..+.++||||||||++++++...+.+.+.+++
T Consensus 130 T~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~ 209 (413)
T TIGR00382 130 TLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGE 209 (413)
T ss_pred HHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccch
Confidence 99999999999999999999998888999998777788877776666777889999999999999987767778899999
Q ss_pred HHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhhccCCCChH
Q 008176 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (575)
Q Consensus 424 ~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~~~~~l~~~ 503 (575)
.+|++||++|||..+++|..+.+.++....++|+|+|++|||+|+|..+++.+.+|.....+||....... .
T Consensus 210 ~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~--------~ 281 (413)
T TIGR00382 210 GVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKK--------S 281 (413)
T ss_pred hHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhcccccccccccc--------c
Confidence 99999999999999999988989999999999999999999999999999999887777789997543211 1
Q ss_pred HHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHhhCCCeEEeC
Q 008176 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVSASVS 574 (575)
Q Consensus 504 ~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~~~~~~~~~~i~l~~~ 574 (575)
.....+++.+..+|+.++||.|||++|++.++.|++|+++++.+|+.++++.+.++|++.+..+||+|+||
T Consensus 282 ~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t 352 (413)
T TIGR00382 282 KEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFE 352 (413)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEC
Confidence 11246677788899999999999999999999999999999999999999999999999999999999997
No 5
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=100.00 E-value=3.9e-33 Score=297.41 Aligned_cols=232 Identities=46% Similarity=0.721 Sum_probs=195.1
Q ss_pred CChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHH
Q 008176 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (575)
Q Consensus 266 ~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTt 345 (575)
.+|+++.+.|+++|+||++||+.+..++++||+|...... ..-++.++++||+||||||||+
T Consensus 1 ltP~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~------------------~~~e~~p~~ILLiGppG~GKT~ 62 (441)
T TIGR00390 1 MTPREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEE------------------LKDEVTPKNILMIGPTGVGKTE 62 (441)
T ss_pred CCHHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccc------------------cccccCCceEEEECCCCCCHHH
Confidence 3799999999999999999999999999999997532211 1113456899999999999999
Q ss_pred HHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhc---------------------------------hh---
Q 008176 346 LAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVS---------------------------------DY--- 389 (575)
Q Consensus 346 LAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a---------------------------------~~--- 389 (575)
+|+++|+.++.+|+.++++.+.+.+|+|.+.+..++.++..+ ..
T Consensus 63 lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~ 142 (441)
T TIGR00390 63 IARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQ 142 (441)
T ss_pred HHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 999999999999999999998877899977667666665544 00
Q ss_pred ------------------------------h-------------------------------------------------
Q 008176 390 ------------------------------N------------------------------------------------- 390 (575)
Q Consensus 390 ------------------------------~------------------------------------------------- 390 (575)
.
T Consensus 143 ~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~ 222 (441)
T TIGR00390 143 TEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKA 222 (441)
T ss_pred cccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHH
Confidence 0
Q ss_pred --------------------HHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCC
Q 008176 391 --------------------VAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPR 450 (575)
Q Consensus 391 --------------------l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~ 450 (575)
-.....|||||||||++..+. .+.+.|.++++||+.||.+|||.+|++.
T Consensus 223 l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~--~~~~~DvS~eGVQ~~LLkilEGt~v~~k--------- 291 (441)
T TIGR00390 223 LIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKG--ESSGADVSREGVQRDLLPIVEGSTVNTK--------- 291 (441)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccC--CCCCCCCCccchhccccccccCceeeec---------
Confidence 012578999999999999764 3457899999999999999999998861
Q ss_pred CCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhhcchhhhhcCCCCccccc
Q 008176 451 GDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGR 530 (575)
Q Consensus 451 ~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~R 530 (575)
...++|+|++|||+|+|... .++| +.|||++|
T Consensus 292 --~~~v~T~~ILFI~~GAF~~~-----------------------------------------kp~D-----lIPEl~GR 323 (441)
T TIGR00390 292 --YGMVKTDHILFIAAGAFQLA-----------------------------------------KPSD-----LIPELQGR 323 (441)
T ss_pred --ceeEECCceeEEecCCcCCC-----------------------------------------Chhh-----ccHHHhCc
Confidence 24799999999999998531 1233 57999999
Q ss_pred cceEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHhhCCCeEEeC
Q 008176 531 FPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVSASVS 574 (575)
Q Consensus 531 f~~ii~~~~LsedeL~eIl~e~l~~L~k~~~~~~~~~~i~l~~~ 574 (575)
||+++.+++|++++|++||+++.|+|++||+++|+..||+|+||
T Consensus 324 ~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ft 367 (441)
T TIGR00390 324 FPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFS 367 (441)
T ss_pred cceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEe
Confidence 99999999999999999999999999999999999999999997
No 6
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=100.00 E-value=1.3e-32 Score=293.49 Aligned_cols=232 Identities=45% Similarity=0.729 Sum_probs=195.0
Q ss_pred CChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHH
Q 008176 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (575)
Q Consensus 266 ~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTt 345 (575)
.+|+++.+.|+++|+||++||+.+..++++||+|...... ...+..++++||+||||||||+
T Consensus 4 ~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~------------------~~~e~~~~~ILliGp~G~GKT~ 65 (443)
T PRK05201 4 LTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEE------------------LRDEVTPKNILMIGPTGVGKTE 65 (443)
T ss_pred CCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcc------------------cccccCCceEEEECCCCCCHHH
Confidence 4899999999999999999999999999999986422111 1122345899999999999999
Q ss_pred HHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhc--------------------------------------
Q 008176 346 LAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVS-------------------------------------- 387 (575)
Q Consensus 346 LAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a-------------------------------------- 387 (575)
+|++||+.++.+|+.++++.+.+.+|+|.+.+..++.++..+
T Consensus 66 LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~ 145 (443)
T PRK05201 66 IARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGE 145 (443)
T ss_pred HHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccc
Confidence 999999999999999999999988999987777777666555
Q ss_pred ---------------------------------h--h-----h-------------------------------------
Q 008176 388 ---------------------------------D--Y-----N------------------------------------- 390 (575)
Q Consensus 388 ---------------------------------~--~-----~------------------------------------- 390 (575)
. . .
T Consensus 146 ~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l 225 (443)
T PRK05201 146 EEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKIL 225 (443)
T ss_pred cccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHH
Confidence 0 0 0
Q ss_pred ------------------HH-hhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCC
Q 008176 391 ------------------VA-AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRG 451 (575)
Q Consensus 391 ------------------l~-~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~ 451 (575)
+. +...|||||||||++..+.+. .+.|.++++||+.||.+|||.+|++
T Consensus 226 ~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~----------- 292 (443)
T PRK05201 226 IEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVST----------- 292 (443)
T ss_pred HHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCC--CCCCCCccchhcccccccccceeee-----------
Confidence 11 237899999999999976432 4789999999999999999999886
Q ss_pred CcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhhcchhhhhcCCCCcccccc
Q 008176 452 DNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF 531 (575)
Q Consensus 452 ~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf 531 (575)
....++|+||+|||+|+|.. ..++| +.|||++||
T Consensus 293 k~~~i~T~~ILFI~~GAF~~-----------------------------------------~kp~D-----lIPEl~GR~ 326 (443)
T PRK05201 293 KYGMVKTDHILFIASGAFHV-----------------------------------------SKPSD-----LIPELQGRF 326 (443)
T ss_pred cceeEECCceeEEecCCcCC-----------------------------------------CChhh-----ccHHHhCcc
Confidence 12479999999999999852 01233 569999999
Q ss_pred ceEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHhhCCCeEEeC
Q 008176 532 PVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVSASVS 574 (575)
Q Consensus 532 ~~ii~~~~LsedeL~eIl~e~l~~L~k~~~~~~~~~~i~l~~~ 574 (575)
|+++.+++|++++|++||+++.|++++||+++|.+.||+|+||
T Consensus 327 Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ft 369 (443)
T PRK05201 327 PIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFT 369 (443)
T ss_pred ceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEc
Confidence 9999999999999999999999999999999999999999997
No 7
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-29 Score=260.41 Aligned_cols=233 Identities=45% Similarity=0.719 Sum_probs=196.9
Q ss_pred CCChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChH
Q 008176 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (575)
Q Consensus 265 ~~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKT 344 (575)
..+|+++..+||++||||++||+.+..++.|+|.|..-... +.-++.|.++|.+||+|+|||
T Consensus 3 ~~tPreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~------------------lr~EV~PKNILMIGpTGVGKT 64 (444)
T COG1220 3 EMTPREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEE------------------LRDEVTPKNILMIGPTGVGKT 64 (444)
T ss_pred CCCHHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHH------------------HhhccCccceEEECCCCCcHH
Confidence 35899999999999999999999999999999987433222 233466789999999999999
Q ss_pred HHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhH---------------------------------
Q 008176 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNV--------------------------------- 391 (575)
Q Consensus 345 tLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l--------------------------------- 391 (575)
.+||.||+..+.||+.+.++-+++.||+|.++++.++++.+.+-..+
T Consensus 65 EIARRLAkl~~aPFiKVEATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g 144 (444)
T COG1220 65 EIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWG 144 (444)
T ss_pred HHHHHHHHHhCCCeEEEEeeeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 99999999999999999999999999999999888887655321000
Q ss_pred --------------------------------------------------------------------------------
Q 008176 392 -------------------------------------------------------------------------------- 391 (575)
Q Consensus 392 -------------------------------------------------------------------------------- 391 (575)
T Consensus 145 ~~~~~~~~~~~r~~~rkkLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~ 224 (444)
T COG1220 145 QSENKQESSATREKFRKKLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKK 224 (444)
T ss_pred cCcccccchHHHHHHHHHHHcCCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHH
Confidence
Q ss_pred ----------------------HhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCC
Q 008176 392 ----------------------AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHP 449 (575)
Q Consensus 392 ----------------------~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~ 449 (575)
.+.+.|||||||||+++.+.. .++++.++++||..||-++||.+|+. +.+
T Consensus 225 ~L~~eea~KLid~e~i~~eAi~~aE~~GIvFIDEIDKIa~~~~--~g~~dvSREGVQRDlLPlvEGstV~T------KyG 296 (444)
T COG1220 225 LLIEEEADKLIDQEEIKQEAIDAAEQNGIVFIDEIDKIAKRGG--SGGPDVSREGVQRDLLPLVEGSTVST------KYG 296 (444)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHhcCeEEEehhhHHHhcCC--CCCCCcchhhhcccccccccCceeec------ccc
Confidence 234689999999999987633 33449999999999999999988874 222
Q ss_pred CCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhhcchhhhhcCCCCcccc
Q 008176 450 RGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVG 529 (575)
Q Consensus 450 ~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~ 529 (575)
.+.|.+++||++|+|.- . .++| +.||+.+
T Consensus 297 -----~VkTdHILFIasGAFh~----------------s-------------------------KPSD-----LiPELQG 325 (444)
T COG1220 297 -----PVKTDHILFIASGAFHV----------------A-------------------------KPSD-----LIPELQG 325 (444)
T ss_pred -----ccccceEEEEecCceec----------------C-------------------------Chhh-----cChhhcC
Confidence 57899999999999731 1 2344 6799999
Q ss_pred ccceEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHhhCCCeEEeC
Q 008176 530 RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVSASVS 574 (575)
Q Consensus 530 Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~~~~~~~~~~i~l~~~ 574 (575)
|||+.+++..|+.+|+++||+++.++|.+||..+|+..|++|+|+
T Consensus 326 RfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~Ft 370 (444)
T COG1220 326 RFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFT 370 (444)
T ss_pred CCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEec
Confidence 999999999999999999999999999999999999999999997
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.4e-26 Score=235.25 Aligned_cols=219 Identities=21% Similarity=0.293 Sum_probs=159.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|-|.++.+++|+++|..+.+. |+-+..+.+.+ +.+||||||||||||+||||+|+..+..
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~------------------PElF~~~GI~P-PKGVLLYGPPGTGKTLLAkAVA~~T~At 212 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKN------------------PELFEELGIDP-PKGVLLYGPPGTGKTLLAKAVANQTDAT 212 (406)
T ss_pred hccCHHHHHHHHHHHhcccccC------------------HHHHHHcCCCC-CCceEeeCCCCCcHHHHHHHHHhccCce
Confidence 5899999999999999855442 23333333333 3689999999999999999999999999
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCe
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~ 437 (575)
|+++.++++. ..|+|++ .+.++++|..|+. ..|+||||||||++..+|.+.+.++|.+.+++.-.||..|||+.
T Consensus 213 FIrvvgSElV-qKYiGEG-aRlVRelF~lAre----kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 213 FIRVVGSELV-QKYIGEG-ARLVRELFELARE----KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred EEEeccHHHH-HHHhccc-hHHHHHHHHHHhh----cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 9999999999 4699999 8999999999874 68999999999999999988777776543334444455556531
Q ss_pred ecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHH-HHHhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhhcc
Q 008176 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEK-TISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (575)
Q Consensus 438 v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~-~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l~~ 515 (575)
...|+-+|++||..| ||. +++.+|+|+.|+|+.|+.+. ..+++.....
T Consensus 287 -------------------~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~g-----------R~~Il~IHtr 336 (406)
T COG1222 287 -------------------PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEG-----------RAEILKIHTR 336 (406)
T ss_pred -------------------CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHH-----------HHHHHHHHhh
Confidence 245788899999998 444 45677999999999999876 2333333222
Q ss_pred hhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHHH
Q 008176 516 SDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNAL 556 (575)
Q Consensus 516 ~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L 556 (575)
.--....+.=+.+.+. -+.++-.|+..|+.|+----
T Consensus 337 kM~l~~dvd~e~la~~-----~~g~sGAdlkaictEAGm~A 372 (406)
T COG1222 337 KMNLADDVDLELLARL-----TEGFSGADLKAICTEAGMFA 372 (406)
T ss_pred hccCccCcCHHHHHHh-----cCCCchHHHHHHHHHHhHHH
Confidence 1111111222223322 35678888888887765433
No 9
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-24 Score=246.41 Aligned_cols=241 Identities=22% Similarity=0.362 Sum_probs=180.5
Q ss_pred CCCCCCCCCCCC----CChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCccccc
Q 008176 254 GCWGGSNLGNKF----PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (575)
Q Consensus 254 ~~~~~~~~~~~~----~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~ 329 (575)
.+|+++|+.... .....+++.|.+.|+||++|++.+..+|.. ..+|...+++|
T Consensus 464 ~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrr------------aRaGL~dp~rP----------- 520 (786)
T COG0542 464 ARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRR------------ARAGLGDPNRP----------- 520 (786)
T ss_pred HHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHH------------HhcCCCCCCCC-----------
Confidence 469999988543 344458899999999999999999999962 23444444443
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHhC---CCEEEeccccccc-----------cccccchhhhHHHHHhhhchhhHHhhc
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQ 395 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l~---~~fv~v~~s~l~~-----------sg~vGe~~~~~l~~lf~~a~~~l~~~~ 395 (575)
-+..||.||+|+|||.||++||..+. ..++++|++++.+ +||||++....+++..... .
T Consensus 521 igsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~-------P 593 (786)
T COG0542 521 IGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRK-------P 593 (786)
T ss_pred ceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcC-------C
Confidence 26788999999999999999999995 7899999999764 7899998778887776653 4
Q ss_pred cCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHH
Q 008176 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (575)
Q Consensus 396 ~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~ 475 (575)
.+||++|||++.+++ |.+.||++||.+.+ .+.. ...++.+|.++|+|+|... +..
T Consensus 594 ySViLlDEIEKAHpd--------------V~nilLQVlDdGrL--------TD~~--Gr~VdFrNtiIImTSN~Gs-~~i 648 (786)
T COG0542 594 YSVILLDEIEKAHPD--------------VFNLLLQVLDDGRL--------TDGQ--GRTVDFRNTIIIMTSNAGS-EEI 648 (786)
T ss_pred CeEEEechhhhcCHH--------------HHHHHHHHhcCCee--------ecCC--CCEEecceeEEEEecccch-HHH
Confidence 679999999999998 99999999994333 2333 3589999999999999643 111
Q ss_pred HHhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHH
Q 008176 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (575)
Q Consensus 476 i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~ 555 (575)
... ..+...+ ......+.+++.+.+ .|.|||++|++.+|.|++|+.+++.+|+...
T Consensus 649 ~~~-----~~~~~~~----------~~~~~~~~v~~~l~~------~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~--- 704 (786)
T COG0542 649 LRD-----ADGDDFA----------DKEALKEAVMEELKK------HFRPEFLNRIDEIIPFNPLSKEVLERIVDLQ--- 704 (786)
T ss_pred Hhh-----ccccccc----------hhhhHHHHHHHHHHh------hCCHHHHhhcccEEeccCCCHHHHHHHHHHH---
Confidence 111 0000001 111223333343333 4899999999999999999999999999844
Q ss_pred HHHHHHHHHhhCCCeEEeC
Q 008176 556 LGKQYRKMFQMNGVSASVS 574 (575)
Q Consensus 556 L~k~~~~~~~~~~i~l~~~ 574 (575)
+++..+.+..++|+|+++
T Consensus 705 -L~~l~~~L~~~~i~l~~s 722 (786)
T COG0542 705 -LNRLAKRLAERGITLELS 722 (786)
T ss_pred -HHHHHHHHHhCCceEEEC
Confidence 455566677999999986
No 10
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.7e-23 Score=217.08 Aligned_cols=226 Identities=23% Similarity=0.351 Sum_probs=169.5
Q ss_pred cccChHHHHHHHHHHHHhh--hhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 278 FVIGQERAKKVLSVAVYNH--YMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~--~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
+|.|.++||+.|.++|..+ +..++...+++| .+||++||||||||+||+|+|.+++
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW----------------------kgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW----------------------KGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhccccc----------------------ceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 5899999999999999754 567888888887 6899999999999999999999999
Q ss_pred CCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 356 ~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
..|+.|+.+.++ +.|.|++ +++++-+|+.|++ ..|++|||||||.++.+|+. .+.++.++++.+.||..|||
T Consensus 271 tTFFNVSsstlt-SKwRGeS-EKlvRlLFemARf----yAPStIFiDEIDslcs~RG~--s~EHEaSRRvKsELLvQmDG 342 (491)
T KOG0738|consen 271 TTFFNVSSSTLT-SKWRGES-EKLVRLLFEMARF----YAPSTIFIDEIDSLCSQRGG--SSEHEASRRVKSELLVQMDG 342 (491)
T ss_pred CeEEEechhhhh-hhhccch-HHHHHHHHHHHHH----hCCceeehhhHHHHHhcCCC--ccchhHHHHHHHHHHHHhhc
Confidence 999999999998 7899998 9999999999986 68999999999999998764 46778888899999999997
Q ss_pred CeecccCCCcccCCCCCcceecCCCEEEEecCCCc-ChHHHHHhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhhc
Q 008176 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV-DIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (575)
Q Consensus 436 ~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~-dL~~~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l~ 514 (575)
-.-.. -..+-|.++++||++ |||++++ ||+.+.|..++|+.+. +++.....+..+.
T Consensus 343 ~~~t~---------------e~~k~VmVLAATN~PWdiDEAlr-RRlEKRIyIPLP~~~~-------R~~Li~~~l~~~~ 399 (491)
T KOG0738|consen 343 VQGTL---------------ENSKVVMVLAATNFPWDIDEALR-RRLEKRIYIPLPDAEA-------RSALIKILLRSVE 399 (491)
T ss_pred ccccc---------------ccceeEEEEeccCCCcchHHHHH-HHHhhheeeeCCCHHH-------HHHHHHHhhcccc
Confidence 32110 012336778899999 5888885 5667888899998775 2222222222222
Q ss_pred chhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHh
Q 008176 515 SSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (575)
Q Consensus 515 ~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~~~~~~~ 565 (575)
..+ +-.+.- ..-..+.++-+|+.-+++++.-..++++...+.
T Consensus 400 ~~~-------~~~~~~--lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~ 441 (491)
T KOG0738|consen 400 LDD-------PVNLED--LAERSEGYSGADITNVCREASMMAMRRKIAGLT 441 (491)
T ss_pred CCC-------CccHHH--HHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCC
Confidence 111 100111 111246688888888887776555555544433
No 11
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.89 E-value=1.4e-22 Score=232.56 Aligned_cols=238 Identities=21% Similarity=0.299 Sum_probs=170.7
Q ss_pred CCCCCCCCCCCC----CChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCccccc
Q 008176 254 GCWGGSNLGNKF----PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (575)
Q Consensus 254 ~~~~~~~~~~~~----~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~ 329 (575)
..|+++|..... .....+++.|.+.|+||+++++.|..++...+..+.. ++ -+
T Consensus 431 ~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~------------~~-----------kp 487 (758)
T PRK11034 431 ARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGH------------EH-----------KP 487 (758)
T ss_pred HHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccC------------CC-----------CC
Confidence 368888776532 2345688999999999999999999999633321111 10 12
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccc-----------cccccchhhhHHHHHhhhchhhHHhhccCe
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQGI 398 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~-----------sg~vGe~~~~~l~~lf~~a~~~l~~~~~~I 398 (575)
.+++||+||||||||++|+++|+.++.+++.++|+++.+ .+|+|......+.+.+. ....+|
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~-------~~p~sV 560 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVI-------KHPHAV 560 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHH-------hCCCcE
Confidence 357899999999999999999999999999999988643 35666543334444332 235689
Q ss_pred EeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHh
Q 008176 399 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISE 478 (575)
Q Consensus 399 LfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~ 478 (575)
|||||||+++++ +++.|+++||++.+.- .. ...++.+|++||+|+|.. .+...
T Consensus 561 lllDEieka~~~--------------v~~~LLq~ld~G~ltd--------~~--g~~vd~rn~iiI~TsN~g-~~~~~-- 613 (758)
T PRK11034 561 LLLDEIEKAHPD--------------VFNLLLQVMDNGTLTD--------NN--GRKADFRNVVLVMTTNAG-VRETE-- 613 (758)
T ss_pred EEeccHhhhhHH--------------HHHHHHHHHhcCeeec--------CC--CceecCCCcEEEEeCCcC-HHHHh--
Confidence 999999999987 9999999999554431 11 235788999999999843 33322
Q ss_pred hhcccCCCCCCchhhhhccCCCChHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHHHHH
Q 008176 479 RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGK 558 (575)
Q Consensus 479 rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k 558 (575)
...+||...+.. ....+.+ +..|.|||++|++.++.|.+|+.+++.+|+. ..++
T Consensus 614 ---~~~~g~~~~~~~-------------~~~~~~~------~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~----~~l~ 667 (758)
T PRK11034 614 ---RKSIGLIHQDNS-------------TDAMEEI------KKIFTPEFRNRLDNIIWFDHLSTDVIHQVVD----KFIV 667 (758)
T ss_pred ---hcccCcccchhh-------------HHHHHHH------HHhcCHHHHccCCEEEEcCCCCHHHHHHHHH----HHHH
Confidence 234666432110 1112222 2348999999999999999999999999997 5556
Q ss_pred HHHHHHhhCCCeEEeC
Q 008176 559 QYRKMFQMNGVSASVS 574 (575)
Q Consensus 559 ~~~~~~~~~~i~l~~~ 574 (575)
++.+.+..+|++|+++
T Consensus 668 ~~~~~l~~~~i~l~~~ 683 (758)
T PRK11034 668 ELQAQLDQKGVSLEVS 683 (758)
T ss_pred HHHHHHHHCCCCceEC
Confidence 6677788999999987
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.8e-22 Score=219.76 Aligned_cols=221 Identities=21% Similarity=0.308 Sum_probs=163.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|-|+++++.+|..+|..+.++ ++.++.+.+.. +.+|||+||||||||.||||+|++.+..
T Consensus 512 dIGaL~~vR~eL~~aI~~PiK~------------------pd~~k~lGi~~-PsGvLL~GPPGCGKTLlAKAVANEag~N 572 (802)
T KOG0733|consen 512 DIGALEEVRLELNMAILAPIKR------------------PDLFKALGIDA-PSGVLLCGPPGCGKTLLAKAVANEAGAN 572 (802)
T ss_pred hcccHHHHHHHHHHHHhhhccC------------------HHHHHHhCCCC-CCceEEeCCCCccHHHHHHHHhhhccCc
Confidence 5788999999999999855443 22223333333 4789999999999999999999999999
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCe
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~ 437 (575)
|+.+.+.++. ..|||++ ++.++.+|.+|+. ..|||||+||+|++.+.|++.. ...+.++.|+||..|||.
T Consensus 573 FisVKGPELl-NkYVGES-ErAVR~vFqRAR~----saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl- 642 (802)
T KOG0733|consen 573 FISVKGPELL-NKYVGES-ERAVRQVFQRARA----SAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGL- 642 (802)
T ss_pred eEeecCHHHH-HHHhhhH-HHHHHHHHHHhhc----CCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhccc-
Confidence 9999999988 5699998 9999999999884 6899999999999999987643 445567999999999972
Q ss_pred ecccCCCcccCCCCCcceecCCCEEEEecCCCcCh-HH-HHHhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhhcc
Q 008176 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EK-TISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (575)
Q Consensus 438 v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL-~~-~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l~~ 515 (575)
-+-.++.+|++||.+|+ |. .++.+|+|..+..+.|+.++ ...+++.+.+
T Consensus 643 ------------------~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e-----------R~~ILK~~tk 693 (802)
T KOG0733|consen 643 ------------------EERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE-----------RVAILKTITK 693 (802)
T ss_pred ------------------ccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH-----------HHHHHHHHhc
Confidence 13445888999999994 44 45677999999988888776 2334444333
Q ss_pred hhhhhcCCCCcc-ccccceEEEcCCCCHHHHHHHHhhhHHHHHH
Q 008176 516 SDLIAYGLIPEF-VGRFPVLVSLLALTENQLVQVLTEPKNALGK 558 (575)
Q Consensus 516 ~dl~~~gl~Pef-i~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k 558 (575)
. .+--+.++. +.-+...-..+.+|-.||..+++++.-.-++
T Consensus 694 n--~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~ 735 (802)
T KOG0733|consen 694 N--TKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALR 735 (802)
T ss_pred c--CCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHH
Confidence 1 000111111 2222333445679999999998876644444
No 13
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2e-22 Score=221.74 Aligned_cols=170 Identities=26% Similarity=0.344 Sum_probs=137.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|-|++++|+.|+++|....+. ++.+....++ ++++|||+||||||||++||++|++++.+
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~------------------pe~F~r~Gi~-ppkGVLlyGPPGC~KT~lAkalAne~~~n 495 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKH------------------PEKFARFGIS-PPKGVLLYGPPGCGKTLLAKALANEAGMN 495 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhc------------------hHHHHHhcCC-CCceEEEECCCCcchHHHHHHHhhhhcCC
Confidence 4788999999999999743331 1111112222 24789999999999999999999999999
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCe
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~ 437 (575)
|+.+.+.++. +.|+|++ ++.+++.|..|+. ..|+|||+||||++..+|+. +.+ .-.+++.++||..|||.
T Consensus 496 FlsvkgpEL~-sk~vGeS-Er~ir~iF~kAR~----~aP~IiFfDEiDsi~~~R~g-~~~--~v~~RVlsqLLtEmDG~- 565 (693)
T KOG0730|consen 496 FLSVKGPELF-SKYVGES-ERAIREVFRKARQ----VAPCIIFFDEIDALAGSRGG-SSS--GVTDRVLSQLLTEMDGL- 565 (693)
T ss_pred eeeccCHHHH-HHhcCch-HHHHHHHHHHHhh----cCCeEEehhhHHhHhhccCC-Ccc--chHHHHHHHHHHHcccc-
Confidence 9999999988 6799998 9999999999874 57899999999999999872 222 33456999999999972
Q ss_pred ecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHH-HHhhhcccCCCCCCchhhh
Q 008176 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKT-ISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 438 v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~-i~~rr~~~~IgF~~p~~e~ 494 (575)
...+++++|++||.++ +|.+ ++.+|+|+.|.+++|+.+.
T Consensus 566 ------------------e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~a 606 (693)
T KOG0730|consen 566 ------------------EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEA 606 (693)
T ss_pred ------------------cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHH
Confidence 2347899999999998 5554 4457999999999999875
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5e-22 Score=213.62 Aligned_cols=210 Identities=22% Similarity=0.383 Sum_probs=158.6
Q ss_pred hhcccccChHHHHHHHHHHHHhhhhh---HhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHYMR---IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~~r---~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraL 350 (575)
.++ +|.|.|+||++|.+.|. |.+ .+....-+ + +.+|||+||||||||+||||+
T Consensus 302 ~F~-dVkG~DEAK~ELeEiVe--fLkdP~kftrLGGK--------------------L-PKGVLLvGPPGTGKTlLARAv 357 (752)
T KOG0734|consen 302 TFE-DVKGVDEAKQELEEIVE--FLKDPTKFTRLGGK--------------------L-PKGVLLVGPPGTGKTLLARAV 357 (752)
T ss_pred ccc-cccChHHHHHHHHHHHH--HhcCcHHhhhccCc--------------------C-CCceEEeCCCCCchhHHHHHh
Confidence 345 48999999999999995 221 12222211 1 368999999999999999999
Q ss_pred HHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHH
Q 008176 351 ARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (575)
Q Consensus 351 A~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL 430 (575)
|.+.+.||+...++++.+. |||.+ .+.++++|..|+ +..||||||||||++..+|..... + .-....|+||
T Consensus 358 AGEA~VPFF~~sGSEFdEm-~VGvG-ArRVRdLF~aAk----~~APcIIFIDEiDavG~kR~~~~~--~-y~kqTlNQLL 428 (752)
T KOG0734|consen 358 AGEAGVPFFYASGSEFDEM-FVGVG-ARRVRDLFAAAK----ARAPCIIFIDEIDAVGGKRNPSDQ--H-YAKQTLNQLL 428 (752)
T ss_pred hcccCCCeEeccccchhhh-hhccc-HHHHHHHHHHHH----hcCCeEEEEechhhhcccCCccHH--H-HHHHHHHHHH
Confidence 9999999999999999865 99998 889999999886 368999999999999998764322 1 3344889999
Q ss_pred HHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHH-HHhhhcccCCCCCCchhhhhccCCCChHHHHHH
Q 008176 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKT-ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSS 508 (575)
Q Consensus 431 ~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~-i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ 508 (575)
..|||+.- ...|++|+++|+++ ||++ ++.+|||+.|..+.|+-.- +.++...
T Consensus 429 vEmDGF~q-------------------NeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~G-------R~eIL~~ 482 (752)
T KOG0734|consen 429 VEMDGFKQ-------------------NEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRG-------RTEILKL 482 (752)
T ss_pred HHhcCcCc-------------------CCceEEEeccCChhhhhHHhcCCCccceeEecCCCCccc-------HHHHHHH
Confidence 99998532 23588999999998 7765 4677999999999998765 4556666
Q ss_pred HHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhh
Q 008176 509 LMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (575)
Q Consensus 509 ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e 551 (575)
++..+... ..++|..|.|=. ..++-.||..++.+
T Consensus 483 yl~ki~~~----~~VD~~iiARGT-----~GFsGAdLaNlVNq 516 (752)
T KOG0734|consen 483 YLSKIPLD----EDVDPKIIARGT-----PGFSGADLANLVNQ 516 (752)
T ss_pred HHhcCCcc----cCCCHhHhccCC-----CCCchHHHHHHHHH
Confidence 66555432 236677777632 34666677666554
No 15
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.87 E-value=1.7e-21 Score=224.08 Aligned_cols=237 Identities=21% Similarity=0.324 Sum_probs=168.3
Q ss_pred CCCCCCCCC----CCCChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccC
Q 008176 255 CWGGSNLGN----KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (575)
Q Consensus 255 ~~~~~~~~~----~~~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~ 330 (575)
.|++.|... +.....++++.|++.|+||+++++.+..++..... |...+.. +.
T Consensus 428 ~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~------------g~~~~~~-----------p~ 484 (731)
T TIGR02639 428 KMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRA------------GLGNPNK-----------PV 484 (731)
T ss_pred HHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhc------------CCCCCCC-----------Cc
Confidence 377777643 23456678999999999999999999998862211 1111110 12
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccc-----------cccccchhhhHHHHHhhhchhhHHhhccCeE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQGIV 399 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~-----------sg~vGe~~~~~l~~lf~~a~~~l~~~~~~IL 399 (575)
+++||+||||||||++|+++|+.++.++++++++++.+ .+|+|.+....+.+.+.. ...+||
T Consensus 485 ~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~-------~p~~Vv 557 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRK-------HPHCVL 557 (731)
T ss_pred eeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHh-------CCCeEE
Confidence 56889999999999999999999999999999988643 457776544445444332 356899
Q ss_pred eehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhh
Q 008176 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 479 (575)
Q Consensus 400 fIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~r 479 (575)
+|||||+++++ +++.|+++||++.+. +. ....++.+|.+||+|+|... +..
T Consensus 558 llDEieka~~~--------------~~~~Ll~~ld~g~~~--------d~--~g~~vd~~~~iii~Tsn~g~-~~~---- 608 (731)
T TIGR02639 558 LLDEIEKAHPD--------------IYNILLQVMDYATLT--------DN--NGRKADFRNVILIMTSNAGA-SEM---- 608 (731)
T ss_pred EEechhhcCHH--------------HHHHHHHhhccCeee--------cC--CCcccCCCCCEEEECCCcch-hhh----
Confidence 99999999987 999999999965442 11 12367899999999999642 111
Q ss_pred hcccCCCCCCchhhhhccCCCChHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHHHHHH
Q 008176 480 RQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQ 559 (575)
Q Consensus 480 r~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~ 559 (575)
....++|.... ..+.+...+ +..|.|+|++|++.++.|.+|+.+++.+|+...+ ++
T Consensus 609 -~~~~~~f~~~~-------------~~~~~~~~~------~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L----~~ 664 (731)
T TIGR02639 609 -SKPPIGFGSEN-------------VESKSDKAI------KKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFV----DE 664 (731)
T ss_pred -hhccCCcchhh-------------hHHHHHHHH------HhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHH----HH
Confidence 12235554211 011222222 2348899999999999999999999999998444 44
Q ss_pred HHHHHhhCCCeEEeC
Q 008176 560 YRKMFQMNGVSASVS 574 (575)
Q Consensus 560 ~~~~~~~~~i~l~~~ 574 (575)
+.+.+..+|++|+++
T Consensus 665 l~~~l~~~~~~l~i~ 679 (731)
T TIGR02639 665 LSKQLNEKNIKLELT 679 (731)
T ss_pred HHHHHHhCCCeEEeC
Confidence 566677889999886
No 16
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=7.3e-22 Score=219.42 Aligned_cols=221 Identities=23% Similarity=0.303 Sum_probs=163.3
Q ss_pred cccChHHHHHHHHHHHHhhhh--hHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
+|-|.+++|.+|.+.|..+.+ .++....++ +.++||+||||||||.+|||+|.++.
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrk----------------------RSGILLYGPPGTGKTLlAKAVATEcs 730 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRK----------------------RSGILLYGPPGTGKTLLAKAVATECS 730 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccc----------------------cceeEEECCCCCchHHHHHHHHhhce
Confidence 489999999999999975433 333322221 37899999999999999999999999
Q ss_pred CCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 356 ~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
..|+.+.+.++.. .|+|++ +..+|+.|++|+. +.|||||+||+|.+++.|+..+.++..+++ +.++||..|||
T Consensus 731 L~FlSVKGPELLN-MYVGqS-E~NVR~VFerAR~----A~PCVIFFDELDSlAP~RG~sGDSGGVMDR-VVSQLLAELDg 803 (953)
T KOG0736|consen 731 LNFLSVKGPELLN-MYVGQS-EENVREVFERARS----AAPCVIFFDELDSLAPNRGRSGDSGGVMDR-VVSQLLAELDG 803 (953)
T ss_pred eeEEeecCHHHHH-HHhcch-HHHHHHHHHHhhc----cCCeEEEeccccccCccCCCCCCccccHHH-HHHHHHHHhhc
Confidence 9999999999885 499998 8899999999884 799999999999999999988888888776 99999999996
Q ss_pred CeecccCCCcccCCCCCcceecCCCEEEEecCCCcCh-HH-HHHhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhh
Q 008176 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EK-TISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (575)
Q Consensus 436 ~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL-~~-~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l 513 (575)
-.- -.++.+.+|.+||.+|| |. +++.+|||+-+..+.++..+ ....+++.+
T Consensus 804 ls~-----------------~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~e----------sk~~vL~Al 856 (953)
T KOG0736|consen 804 LSD-----------------SSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAE----------SKLRVLEAL 856 (953)
T ss_pred ccC-----------------CCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHH----------HHHHHHHHH
Confidence 211 04567889999999995 33 55677999988777665443 234444444
Q ss_pred cchhhhhcCCC-CccccccceEEEcCCCCHHHHHHHHhhhHHHHHHH
Q 008176 514 ESSDLIAYGLI-PEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQ 559 (575)
Q Consensus 514 ~~~dl~~~gl~-Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~ 559 (575)
...--..-+++ -+..++.+ ..+|-.|+..++.++.-+-+++
T Consensus 857 TrkFkLdedVdL~eiAk~cp-----~~~TGADlYsLCSdA~l~AikR 898 (953)
T KOG0736|consen 857 TRKFKLDEDVDLVEIAKKCP-----PNMTGADLYSLCSDAMLAAIKR 898 (953)
T ss_pred HHHccCCCCcCHHHHHhhCC-----cCCchhHHHHHHHHHHHHHHHH
Confidence 42211100111 22333332 4678888888887655444343
No 17
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.87 E-value=4.7e-21 Score=222.87 Aligned_cols=250 Identities=24% Similarity=0.347 Sum_probs=171.9
Q ss_pred CCCCCCCCCCCC----CChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCccccc
Q 008176 254 GCWGGSNLGNKF----PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (575)
Q Consensus 254 ~~~~~~~~~~~~----~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~ 329 (575)
..|+|+|+.... .....+++.|.+.|+||++|++.|..++...+..+.. ++. +
T Consensus 482 ~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~------------~~~-----------p 538 (821)
T CHL00095 482 SAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKN------------PNR-----------P 538 (821)
T ss_pred HHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccC------------CCC-----------C
Confidence 368888877633 2345689999999999999999999999643332211 111 1
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHh---CCCEEEecccccc-----------ccccccchhhhHHHHHhhhchhhHHhhc
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT-----------QAGYVGEDVESILYKLLTVSDYNVAAAQ 395 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~-----------~sg~vGe~~~~~l~~lf~~a~~~l~~~~ 395 (575)
.+.+||+||+|||||++|++||+.+ ..++++++++++. +.||+|.+....+.+.... ..
T Consensus 539 ~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~-------~p 611 (821)
T CHL00095 539 IASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRK-------KP 611 (821)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHh-------CC
Confidence 2467899999999999999999987 3578899988753 2457776544445444332 34
Q ss_pred cCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHH
Q 008176 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (575)
Q Consensus 396 ~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~ 475 (575)
.+||+|||+|++++. +++.|+++||++.+. +.. ...++.+|.+||+|+|... +.
T Consensus 612 ~~VvllDeieka~~~--------------v~~~Llq~le~g~~~--------d~~--g~~v~~~~~i~I~Tsn~g~--~~ 665 (821)
T CHL00095 612 YTVVLFDEIEKAHPD--------------IFNLLLQILDDGRLT--------DSK--GRTIDFKNTLIIMTSNLGS--KV 665 (821)
T ss_pred CeEEEECChhhCCHH--------------HHHHHHHHhccCcee--------cCC--CcEEecCceEEEEeCCcch--HH
Confidence 589999999999988 999999999954432 112 2478899999999999753 22
Q ss_pred HHhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHH
Q 008176 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (575)
Q Consensus 476 i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~ 555 (575)
+.. ....+||....... .......+.+.+. +++.+ .|.|||++|++.++.|.+|+.+++.+|+...++.
T Consensus 666 i~~--~~~~~gf~~~~~~~-------~~~~~~~~~~~~~-~~~~~-~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 666 IET--NSGGLGFELSENQL-------SEKQYKRLSNLVN-EELKQ-FFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred HHh--hccccCCccccccc-------ccccHHHHHHHHH-HHHHH-hcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 221 12456776432110 0001122222222 22233 3899999999999999999999999999855555
Q ss_pred HHHHHHHHHhhCCCeEEeC
Q 008176 556 LGKQYRKMFQMNGVSASVS 574 (575)
Q Consensus 556 L~k~~~~~~~~~~i~l~~~ 574 (575)
+ .+.+..+||+|+++
T Consensus 735 l----~~rl~~~~i~l~~~ 749 (821)
T CHL00095 735 L----FKRLNEQGIQLEVT 749 (821)
T ss_pred H----HHHHHHCCcEEEEC
Confidence 4 44457789999987
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.86 E-value=1.2e-21 Score=196.14 Aligned_cols=167 Identities=29% Similarity=0.424 Sum_probs=134.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+||||++||+.-+.++. |.+--...+ .| .+.+|||+||||||||++|+++|++.+.|
T Consensus 122 dViGqEeAK~kcrli~~--yLenPe~Fg-~W--------------------APknVLFyGppGTGKTm~Akalane~kvp 178 (368)
T COG1223 122 DVIGQEEAKRKCRLIME--YLENPERFG-DW--------------------APKNVLFYGPPGTGKTMMAKALANEAKVP 178 (368)
T ss_pred hhhchHHHHHHHHHHHH--HhhChHHhc-cc--------------------CcceeEEECCCCccHHHHHHHHhcccCCc
Confidence 58999999998766553 332111111 12 24899999999999999999999999999
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCe
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~ 437 (575)
++.+.++++.. .++|++ .+.++++++.|+. ..|||+||||+|++.-+|....+.+|.+ ++.|+||..|||.
T Consensus 179 ~l~vkat~liG-ehVGdg-ar~Ihely~rA~~----~aPcivFiDE~DAiaLdRryQelRGDVs--EiVNALLTelDgi- 249 (368)
T COG1223 179 LLLVKATELIG-EHVGDG-ARRIHELYERARK----AAPCIVFIDELDAIALDRRYQELRGDVS--EIVNALLTELDGI- 249 (368)
T ss_pred eEEechHHHHH-HHhhhH-HHHHHHHHHHHHh----cCCeEEEehhhhhhhhhhhHHHhcccHH--HHHHHHHHhccCc-
Confidence 99999999874 599998 7888999998863 6899999999999999998777777765 3899999999962
Q ss_pred ecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhh
Q 008176 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 438 v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~ 494 (575)
.....++.||+||.+++-+..-+.||...|+|.+|+.++
T Consensus 250 ------------------~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eE 288 (368)
T COG1223 250 ------------------KENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEE 288 (368)
T ss_pred ------------------ccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHH
Confidence 123448889999999865555567899999999998876
No 19
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=5.2e-21 Score=194.57 Aligned_cols=166 Identities=25% Similarity=0.420 Sum_probs=139.7
Q ss_pred cccChHHHHHHHHHHHHhh--hhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 278 FVIGQERAKKVLSVAVYNH--YMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~--~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
+|.|.+.||+.|.++|..+ +..++...|.+| +++||+|||||||+.||+|+|.+.+
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw----------------------rgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW----------------------RGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcc----------------------eeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 4899999999999999754 456777777766 6899999999999999999999999
Q ss_pred CCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 356 ~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
..|+.++.+++. +.|+|++ ++.+..+|+.++. ..|+||||||||.++..|+. +..+..+++...||..|.|
T Consensus 192 STFFSvSSSDLv-SKWmGES-EkLVknLFemARe----~kPSIIFiDEiDslcg~r~e---nEseasRRIKTEfLVQMqG 262 (439)
T KOG0739|consen 192 STFFSVSSSDLV-SKWMGES-EKLVKNLFEMARE----NKPSIIFIDEIDSLCGSRSE---NESEASRRIKTEFLVQMQG 262 (439)
T ss_pred CceEEeehHHHH-HHHhccH-HHHHHHHHHHHHh----cCCcEEEeehhhhhccCCCC---CchHHHHHHHHHHHHhhhc
Confidence 999999999999 7899998 9999999999875 68999999999999987653 2334456699999999996
Q ss_pred CeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHhhhcccCCCCCCchhh
Q 008176 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRA 493 (575)
Q Consensus 436 ~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~rr~~~~IgF~~p~~e 493 (575)
. --+...++++.++|.+- |+.++ +|||.+.|..++|+..
T Consensus 263 V------------------G~d~~gvLVLgATNiPw~LDsAI-RRRFekRIYIPLPe~~ 302 (439)
T KOG0739|consen 263 V------------------GNDNDGVLVLGATNIPWVLDSAI-RRRFEKRIYIPLPEAH 302 (439)
T ss_pred c------------------ccCCCceEEEecCCCchhHHHHH-HHHhhcceeccCCcHH
Confidence 1 12556688899999887 55565 5789999999999765
No 20
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.1e-20 Score=188.68 Aligned_cols=173 Identities=24% Similarity=0.388 Sum_probs=140.6
Q ss_pred cccChHHHHHHHHHHHHhhhh--hHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
+|-|.+-.|+++++++..+.. .++..... . ++++|||+||||||||+||+++|+...
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigi--------------------d-pprgvllygppg~gktml~kava~~t~ 214 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGI--------------------D-PPRGVLLYGPPGTGKTMLAKAVANHTT 214 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCC--------------------C-CCcceEEeCCCCCcHHHHHHHHhhccc
Confidence 589999999999999975432 23333332 1 347899999999999999999999999
Q ss_pred CCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 356 ~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
..|+++.++++. ..|.|++ -+.+++.|..++. +.|+||||||||++..+|-+...+.|....++.-.||..|||
T Consensus 215 a~firvvgsefv-qkylgeg-prmvrdvfrlake----napsiifideidaiatkrfdaqtgadrevqril~ellnqmdg 288 (408)
T KOG0727|consen 215 AAFIRVVGSEFV-QKYLGEG-PRMVRDVFRLAKE----NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDG 288 (408)
T ss_pred hheeeeccHHHH-HHHhccC-cHHHHHHHHHHhc----cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccC
Confidence 999999999998 4699998 6789999998864 589999999999999999998888887666666667777776
Q ss_pred CeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHH-HHHhhhcccCCCCCCchhhhhc
Q 008176 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEK-TISERRQDSSIGFGAPVRANMR 496 (575)
Q Consensus 436 ~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~-~i~~rr~~~~IgF~~p~~e~~~ 496 (575)
+. .+.|+-+|+++|..| ++. +++.+|.++.|+|+.|++.+-+
T Consensus 289 fd-------------------q~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkr 332 (408)
T KOG0727|consen 289 FD-------------------QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 332 (408)
T ss_pred cC-------------------cccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhh
Confidence 42 356788888888887 555 4567799999999999987633
No 21
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=8e-21 Score=207.06 Aligned_cols=186 Identities=24% Similarity=0.365 Sum_probs=144.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|-|.+....+|.+.+. |.+ .++++..+.+.+ +++|||+||||||||+||+++|++++.|
T Consensus 191 diGG~d~~~~el~~li~-~i~------------------~Pe~~~~lGv~P-prGvLlHGPPGCGKT~lA~AiAgel~vP 250 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELII-HIK------------------HPEVFSSLGVRP-PRGVLLHGPPGCGKTSLANAIAGELGVP 250 (802)
T ss_pred hccChHHHHHHHHHHHH-Hhc------------------CchhHhhcCCCC-CCceeeeCCCCccHHHHHHHHhhhcCCc
Confidence 37999999999999885 222 234444444444 4789999999999999999999999999
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCe
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~ 437 (575)
|+.++++++. +|+.|++ ++.++++|+.|.. ..|||+||||||++.++|+.. +.+. .+++..+||..||+-.
T Consensus 251 f~~isApeiv-SGvSGES-EkkiRelF~~A~~----~aPcivFiDeIDAI~pkRe~a--qreM-ErRiVaQLlt~mD~l~ 321 (802)
T KOG0733|consen 251 FLSISAPEIV-SGVSGES-EKKIRELFDQAKS----NAPCIVFIDEIDAITPKREEA--QREM-ERRIVAQLLTSMDELS 321 (802)
T ss_pred eEeecchhhh-cccCccc-HHHHHHHHHHHhc----cCCeEEEeecccccccchhhH--HHHH-HHHHHHHHHHhhhccc
Confidence 9999999999 8999998 8899999999864 689999999999999998752 3344 4459999999999521
Q ss_pred ecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHh-hhcccCCCCCCchhhhhccCCCChHHHHHHHHhhhc
Q 008176 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (575)
Q Consensus 438 v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~-rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l~ 514 (575)
.. ......+++|++||.+| +|.++++ +||++.|....|++.. +++++..+.+.+.
T Consensus 322 ~~---------------~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~a-------R~~IL~~~~~~lr 378 (802)
T KOG0733|consen 322 NE---------------KTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETA-------REEILRIICRGLR 378 (802)
T ss_pred cc---------------ccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHH-------HHHHHHHHHhhCC
Confidence 10 01245589999999998 6666653 4899999999998765 4555555555444
No 22
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.1e-20 Score=213.03 Aligned_cols=171 Identities=26% Similarity=0.378 Sum_probs=138.1
Q ss_pred cccChHHHHHHHHHHHH-hhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCC
Q 008176 278 FVIGQERAKKVLSVAVY-NHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~-~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~ 356 (575)
+|.|.++||++|.+.|. ..-...|..... .+ ++++||+||||||||+||||+|.+.+.
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGA--------------------Ki-PkGvLL~GPPGTGKTLLAKAiAGEAgV 370 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGA--------------------KI-PKGVLLVGPPGTGKTLLAKAIAGEAGV 370 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCC--------------------cC-cCceEEECCCCCcHHHHHHHHhcccCC
Confidence 59999999999999995 111112222222 23 378999999999999999999999999
Q ss_pred CEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhh-hcccCCCcchHHHHHHHHHHhhC
Q 008176 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE-SLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 357 ~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~-~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
||+.++++++.+. ++|.. ...++++|..++. ..|||+||||||.+...|. ....+++.+++...|+||..|||
T Consensus 371 PF~svSGSEFvE~-~~g~~-asrvr~lf~~ar~----~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg 444 (774)
T KOG0731|consen 371 PFFSVSGSEFVEM-FVGVG-ASRVRDLFPLARK----NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG 444 (774)
T ss_pred ceeeechHHHHHH-hcccc-hHHHHHHHHHhhc----cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC
Confidence 9999999999954 77777 7889999998874 5899999999999999984 33456777788899999999997
Q ss_pred CeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHH-HHHhhhcccCCCCCCchhhh
Q 008176 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEK-TISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 436 ~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~-~i~~rr~~~~IgF~~p~~e~ 494 (575)
+. .+++++++++||.+| +|. +++.+|||+.|..+.|+...
T Consensus 445 f~-------------------~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~ 486 (774)
T KOG0731|consen 445 FE-------------------TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKG 486 (774)
T ss_pred Cc-------------------CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhh
Confidence 42 236699999999999 444 44567999999999998765
No 23
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.82 E-value=1.2e-19 Score=211.21 Aligned_cols=240 Identities=20% Similarity=0.331 Sum_probs=165.9
Q ss_pred CCCCCCCCCCC----CChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccC
Q 008176 255 CWGGSNLGNKF----PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (575)
Q Consensus 255 ~~~~~~~~~~~----~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~ 330 (575)
.|+|+|+.... ....++++.|.+.|+||+++++.+..++..... |...+.. +.
T Consensus 540 ~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~------------gl~~~~~-----------p~ 596 (852)
T TIGR03345 540 DWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARA------------GLEDPRK-----------PL 596 (852)
T ss_pred HHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhc------------CCCCCCC-----------Cc
Confidence 58898887533 345568899999999999999999999962221 1111111 12
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccc-----------cccccchhhhHHHHHhhhchhhHHhhcc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQ 396 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~-----------sg~vGe~~~~~l~~lf~~a~~~l~~~~~ 396 (575)
+.+||.||||||||.+|+++|+.+ ...++.++++++.+ .||+|.+....+.+.+.. ...
T Consensus 597 ~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~-------~p~ 669 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRR-------KPY 669 (852)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHh-------CCC
Confidence 457899999999999999999988 45788999887542 467877644555544433 467
Q ss_pred CeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHH
Q 008176 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (575)
Q Consensus 397 ~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i 476 (575)
+||+||||+++++. +++.|+++|+.+.+. +.. ...++++|.+||+|+|... +.+.
T Consensus 670 svvllDEieka~~~--------------v~~~Llq~ld~g~l~--------d~~--Gr~vd~~n~iiI~TSNlg~-~~~~ 724 (852)
T TIGR03345 670 SVVLLDEVEKAHPD--------------VLELFYQVFDKGVME--------DGE--GREIDFKNTVILLTSNAGS-DLIM 724 (852)
T ss_pred cEEEEechhhcCHH--------------HHHHHHHHhhcceee--------cCC--CcEEeccccEEEEeCCCch-HHHH
Confidence 89999999999887 999999999954332 222 2478999999999999643 2222
Q ss_pred HhhhcccCCCCC-CchhhhhccCCCChHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHH
Q 008176 477 SERRQDSSIGFG-APVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (575)
Q Consensus 477 ~~rr~~~~IgF~-~p~~e~~~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~ 555 (575)
. ... ++. .+. .....+.+.+.+.. .|.|+|++|++ ++.|.+|+.+++.+|+...++.
T Consensus 725 ~-~~~----~~~~~~~----------~~~~~~~~~~~~~~------~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 725 A-LCA----DPETAPD----------PEALLEALRPELLK------VFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred H-hcc----CcccCcc----------hHHHHHHHHHHHHH------hccHHHhccee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 1 111 110 010 11122233333322 38899999997 8999999999999999977766
Q ss_pred HHHHHHHHHhhCCCeEEeC
Q 008176 556 LGKQYRKMFQMNGVSASVS 574 (575)
Q Consensus 556 L~k~~~~~~~~~~i~l~~~ 574 (575)
+.+++. ..+|++++++
T Consensus 783 l~~rl~---~~~gi~l~i~ 798 (852)
T TIGR03345 783 IARRLK---ENHGAELVYS 798 (852)
T ss_pred HHHHHH---HhcCceEEEC
Confidence 655432 2348988886
No 24
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=9.6e-20 Score=202.13 Aligned_cols=171 Identities=26% Similarity=0.350 Sum_probs=139.2
Q ss_pred cccChHHHHHHHHHHHH-hhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCC
Q 008176 278 FVIGQERAKKVLSVAVY-NHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~-~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~ 356 (575)
+|.|.+++|+.+.+.|. ......+.....+ + +.++||+||||||||+|||++|.+.+.
T Consensus 151 DVAG~dEakeel~EiVdfLk~p~ky~~lGak--------------------i-PkGvlLvGpPGTGKTLLAkAvAgEA~V 209 (596)
T COG0465 151 DVAGVDEAKEELSELVDFLKNPKKYQALGAK--------------------I-PKGVLLVGPPGTGKTLLAKAVAGEAGV 209 (596)
T ss_pred hhcCcHHHHHHHHHHHHHHhCchhhHhcccc--------------------c-ccceeEecCCCCCcHHHHHHHhcccCC
Confidence 58999999999999995 1111112222211 2 368999999999999999999999999
Q ss_pred CEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCC
Q 008176 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (575)
Q Consensus 357 ~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~ 436 (575)
||+.++++++.+. |+|.+ .+.+|++|..+.. ..|||+||||||++...|..+-++++..+|.+.++||..|||+
T Consensus 210 PFf~iSGS~FVem-fVGvG-AsRVRdLF~qAkk----~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF 283 (596)
T COG0465 210 PFFSISGSDFVEM-FVGVG-ASRVRDLFEQAKK----NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 283 (596)
T ss_pred Cceeccchhhhhh-hcCCC-cHHHHHHHHHhhc----cCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccC
Confidence 9999999999865 89988 7889999998863 5789999999999999998776778888889999999999974
Q ss_pred eecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHH-HHHhhhcccCCCCCCchhhh
Q 008176 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEK-TISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 437 ~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~-~i~~rr~~~~IgF~~p~~e~ 494 (575)
. ..+.+++|++||++| +|. +++.+|||+.|-.+.|+-..
T Consensus 284 ~-------------------~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~g 324 (596)
T COG0465 284 G-------------------GNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKG 324 (596)
T ss_pred C-------------------CCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhh
Confidence 2 224588899999998 544 55677999999999998654
No 25
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=8.8e-20 Score=182.09 Aligned_cols=170 Identities=25% Similarity=0.412 Sum_probs=136.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
.|-|.++.++.+.+.+..+.+ .++.++.+.+.- +.++||+||||||||.||+++|....+.
T Consensus 148 MiGgLd~QIkeIkEVIeLPvK------------------HPELF~aLGIaQ-PKGvlLygppgtGktLlaraVahht~c~ 208 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVK------------------HPELFEALGIAQ-PKGVLLYGPPGTGKTLLARAVAHHTDCT 208 (404)
T ss_pred HhccHHHHHHHHHHHHhcccc------------------CHHHHHhcCCCC-CcceEEecCCCCchhHHHHHHHhhcceE
Confidence 578899999999999974433 223333333333 3689999999999999999999999999
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhh---
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE--- 434 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LE--- 434 (575)
|++++++++. ..|+|++ .+.++++|.+++. ..|+|||.||||.+...|...+.++|.. +|.++|+++.
T Consensus 209 firvsgselv-qk~igeg-srmvrelfvmare----hapsiifmdeidsigs~r~e~~~ggdse---vqrtmlellnqld 279 (404)
T KOG0728|consen 209 FIRVSGSELV-QKYIGEG-SRMVRELFVMARE----HAPSIIFMDEIDSIGSSRVESGSGGDSE---VQRTMLELLNQLD 279 (404)
T ss_pred EEEechHHHH-HHHhhhh-HHHHHHHHHHHHh----cCCceEeeecccccccccccCCCCccHH---HHHHHHHHHHhcc
Confidence 9999999998 4699998 8999999999874 6899999999999999998877776654 6766666654
Q ss_pred CCeecccCCCcccCCCCCcceecCCCEEEEecCCCcCh-HH-HHHhhhcccCCCCCCchhhh
Q 008176 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EK-TISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 435 g~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL-~~-~i~~rr~~~~IgF~~p~~e~ 494 (575)
|+ -.++|+-+|+++|..|+ +. +++.+|.|+.|+|+.|+++.
T Consensus 280 gf-------------------eatknikvimatnridild~allrpgridrkiefp~p~e~a 322 (404)
T KOG0728|consen 280 GF-------------------EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEA 322 (404)
T ss_pred cc-------------------ccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHH
Confidence 42 25788999999999984 44 34566999999999998764
No 26
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.80 E-value=7.3e-20 Score=175.78 Aligned_cols=165 Identities=41% Similarity=0.606 Sum_probs=118.3
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHhCC----CEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHh
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYVNV----PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l~~----~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID 405 (575)
..++||.||+|||||.+|+++|+.+.. +++.++++++.. +++....+..+...+...+.....+||||||||
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~----~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEid 78 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE----GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEID 78 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS----HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc----cchHHhhhhhhhhcccceeeccchhhhhhHHHh
Confidence 368999999999999999999999985 899999999875 233334444555555444555677899999999
Q ss_pred hhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCC
Q 008176 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (575)
Q Consensus 406 ~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~I 485 (575)
++++. .+.+.+.+++.+|+.||++||++.+. ..++ ..++++|++||||+|+.........+..
T Consensus 79 Ka~~~---~~~~~~v~~~~V~~~LL~~le~g~~~--------d~~g--~~vd~~n~ifI~Tsn~~~~~~~~~~~~~---- 141 (171)
T PF07724_consen 79 KAHPS---NSGGADVSGEGVQNSLLQLLEGGTLT--------DSYG--RTVDTSNIIFIMTSNFGAEEIIDASRSG---- 141 (171)
T ss_dssp GCSHT---TTTCSHHHHHHHHHHHHHHHHHSEEE--------ETTC--CEEEGTTEEEEEEESSSTHHHHHCHHHC----
T ss_pred hcccc---ccccchhhHHHHHHHHHHHhccccee--------cccc--eEEEeCCceEEEecccccchhhhhhccc----
Confidence 99986 45677888888999999999976664 1222 5899999999999999875433322111
Q ss_pred CCCCchhhhhccCCCChHHHHHHHHhhhcchhhhhcCCCCccccccceE
Q 008176 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVL 534 (575)
Q Consensus 486 gF~~p~~e~~~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~i 534 (575)
. . . .........++.++++.|||++|++.+
T Consensus 142 --~-~----------~------~~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 142 --E-A----------I------EQEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp --T-C----------C------HHHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred --c-c----------c------HHHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 0 0 0 011111234567788999999999874
No 27
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.78 E-value=4.5e-18 Score=198.72 Aligned_cols=237 Identities=24% Similarity=0.364 Sum_probs=161.0
Q ss_pred CCCCCCCCCCC----CChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccC
Q 008176 255 CWGGSNLGNKF----PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (575)
Q Consensus 255 ~~~~~~~~~~~----~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~ 330 (575)
.|+|+|+.... .....+++.|.+.|+||+.+++.+..++..... |...++. +.
T Consensus 539 ~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~------------gl~~~~~-----------p~ 595 (852)
T TIGR03346 539 RWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRA------------GLSDPNR-----------PI 595 (852)
T ss_pred HhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhc------------cCCCCCC-----------CC
Confidence 57888776532 344557888999999999999999999962221 1111111 12
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccc-----------cccccchhhhHHHHHhhhchhhHHhhcc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQ 396 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~-----------sg~vGe~~~~~l~~lf~~a~~~l~~~~~ 396 (575)
+.+||.||+|||||++|++||+.+ +.+++.++++++.. .+|+|......+.+.+.. ...
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~-------~p~ 668 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRR-------KPY 668 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHc-------CCC
Confidence 568899999999999999999887 46899999987532 345555433344433322 345
Q ss_pred CeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHH
Q 008176 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (575)
Q Consensus 397 ~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i 476 (575)
+||+||||+++++. +++.|+++||.+.+. . .....++.+|.+||+|+|... +...
T Consensus 669 ~vlllDeieka~~~--------------v~~~Ll~~l~~g~l~--------d--~~g~~vd~rn~iiI~TSn~g~-~~~~ 723 (852)
T TIGR03346 669 SVVLFDEVEKAHPD--------------VFNVLLQVLDDGRLT--------D--GQGRTVDFRNTVIIMTSNLGS-QFIQ 723 (852)
T ss_pred cEEEEeccccCCHH--------------HHHHHHHHHhcCcee--------c--CCCeEEecCCcEEEEeCCcch-HhHh
Confidence 79999999999988 999999999954332 1 123578899999999999643 1111
Q ss_pred HhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHHH
Q 008176 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNAL 556 (575)
Q Consensus 477 ~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L 556 (575)
.. . ... ...+....+++.+. ..|.|+|++|++.++.|.+++.+++.+|+...++.+
T Consensus 724 ~~--~------~~~----------~~~~~~~~~~~~~~------~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l 779 (852)
T TIGR03346 724 EL--A------GGD----------DYEEMREAVMEVLR------AHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRL 779 (852)
T ss_pred hh--c------ccc----------cHHHHHHHHHHHHH------hhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHH
Confidence 10 0 000 01111222222222 348999999999999999999999999998555544
Q ss_pred HHHHHHHHhhCCCeEEeC
Q 008176 557 GKQYRKMFQMNGVSASVS 574 (575)
Q Consensus 557 ~k~~~~~~~~~~i~l~~~ 574 (575)
.+.+..+|+.++++
T Consensus 780 ----~~~l~~~~~~l~i~ 793 (852)
T TIGR03346 780 ----RKRLAERKITLELS 793 (852)
T ss_pred ----HHHHHHCCCeecCC
Confidence 44456678887775
No 28
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.6e-19 Score=177.10 Aligned_cols=174 Identities=22% Similarity=0.338 Sum_probs=134.0
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCC
Q 008176 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (575)
Q Consensus 277 ~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~ 356 (575)
.+|-|..+.++.|++.+..+... ++-+-.+.+. ++.+|||+||||||||.+|+++|+..+.
T Consensus 177 ~dvggckeqieklrevve~pll~------------------perfv~lgid-ppkgvllygppgtgktl~aravanrtda 237 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLH------------------PERFVNLGID-PPKGVLLYGPPGTGKTLCARAVANRTDA 237 (435)
T ss_pred ccccchHHHHHHHHHHHhccccC------------------HHHHhhcCCC-CCCceEEeCCCCCchhHHHHHHhcccCc
Confidence 35899999999999999744331 1111111222 2468999999999999999999999999
Q ss_pred CEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCC
Q 008176 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (575)
Q Consensus 357 ~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~ 436 (575)
-|+++-++++. ..|+|++ .+.++++|++++. ...||||+||||++...|-+.+.++|. ++|.++|+++..-
T Consensus 238 cfirvigselv-qkyvgeg-armvrelf~mart----kkaciiffdeidaiggarfddg~ggdn---evqrtmleli~ql 308 (435)
T KOG0729|consen 238 CFIRVIGSELV-QKYVGEG-ARMVRELFEMART----KKACIIFFDEIDAIGGARFDDGAGGDN---EVQRTMLELINQL 308 (435)
T ss_pred eEEeehhHHHH-HHHhhhh-HHHHHHHHHHhcc----cceEEEEeeccccccCccccCCCCCcH---HHHHHHHHHHHhc
Confidence 99999999998 4699998 8999999999874 567999999999999998877666664 3788877776510
Q ss_pred eecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHH-HHHhhhcccCCCCCCchhhh
Q 008176 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEK-TISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 437 ~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~-~i~~rr~~~~IgF~~p~~e~ 494 (575)
..+++ ..|+-+++++|.++ ++. +++.+|.++.++|.+|+-+.
T Consensus 309 --------dgfdp--------rgnikvlmatnrpdtldpallrpgrldrkvef~lpdleg 352 (435)
T KOG0729|consen 309 --------DGFDP--------RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEG 352 (435)
T ss_pred --------cCCCC--------CCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccc
Confidence 01222 34677788888887 555 45677999999999998774
No 29
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.77 E-value=4.6e-18 Score=187.70 Aligned_cols=173 Identities=23% Similarity=0.324 Sum_probs=128.3
Q ss_pred hhcccccChHHHHHHHHHHHHhhhhh--HhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLA 351 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~~r--~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA 351 (575)
.+++ |+|++++|+.+.+++.. ++. .+.... .. .+.++||+||||||||++|+++|
T Consensus 53 ~~~d-i~g~~~~k~~l~~~~~~-l~~~~~~~~~g--------------------~~-~~~giLL~GppGtGKT~la~alA 109 (495)
T TIGR01241 53 TFKD-VAGIDEAKEELMEIVDF-LKNPSKFTKLG--------------------AK-IPKGVLLVGPPGTGKTLLAKAVA 109 (495)
T ss_pred CHHH-hCCHHHHHHHHHHHHHH-HHCHHHHHhcC--------------------CC-CCCcEEEECCCCCCHHHHHHHHH
Confidence 3444 79999999999987752 111 111111 11 23679999999999999999999
Q ss_pred HHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHH
Q 008176 352 RYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (575)
Q Consensus 352 ~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~ 431 (575)
+.++.+++.++++++. ..++|+. .+.++..|..+.. ..++||||||||.+..++.....+.+...+.+.+.||.
T Consensus 110 ~~~~~~~~~i~~~~~~-~~~~g~~-~~~l~~~f~~a~~----~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~ 183 (495)
T TIGR01241 110 GEAGVPFFSISGSDFV-EMFVGVG-ASRVRDLFEQAKK----NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLV 183 (495)
T ss_pred HHcCCCeeeccHHHHH-HHHhccc-HHHHHHHHHHHHh----cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHh
Confidence 9999999999998876 3477776 6677888877642 57899999999999988765433334455568889999
Q ss_pred HhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHh-hhcccCCCCCCchhhh
Q 008176 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (575)
Q Consensus 432 ~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~-rr~~~~IgF~~p~~e~ 494 (575)
.||+. ....++++|+++|.++ ++.++.+ .||+..|.++.|+.+.
T Consensus 184 ~~d~~-------------------~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~ 229 (495)
T TIGR01241 184 EMDGF-------------------GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKG 229 (495)
T ss_pred hhccc-------------------cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHH
Confidence 99852 1234578888888876 6666654 5899999999998765
No 30
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=8.1e-18 Score=185.40 Aligned_cols=222 Identities=23% Similarity=0.262 Sum_probs=154.1
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
++.|.+.+|+.+.+++....++...... ..+. ++.++||+||||||||++|+++|..++.+
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~------------------~~~~-~~~giLl~GpPGtGKT~lAkava~~~~~~ 303 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRK------------------LGLR-PPKGVLLYGPPGTGKTLLAKAVALESRSR 303 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHh------------------cCCC-CCCeeEEECCCCCCHHHHHHHHHhhCCCe
Confidence 3788999999999999755443221110 0000 23589999999999999999999999999
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCe
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~ 437 (575)
|+.++++++. +.|+|+. ++.+++.|..++ ...+|||||||+|++...|... .+.+.+++.+.||..|+|
T Consensus 304 fi~v~~~~l~-sk~vGes-ek~ir~~F~~A~----~~~p~iiFiDEiDs~~~~r~~~---~~~~~~r~~~~lL~~~d~-- 372 (494)
T COG0464 304 FISVKGSELL-SKWVGES-EKNIRELFEKAR----KLAPSIIFIDEIDSLASGRGPS---EDGSGRRVVGQLLTELDG-- 372 (494)
T ss_pred EEEeeCHHHh-ccccchH-HHHHHHHHHHHH----cCCCcEEEEEchhhhhccCCCC---CchHHHHHHHHHHHHhcC--
Confidence 9999999888 6799998 899999999886 3689999999999999987542 222335699999999985
Q ss_pred ecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHh-hhcccCCCCCCchhhhhccCCCChHHHHHHHHhhhcc
Q 008176 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (575)
Q Consensus 438 v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~-rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l~~ 515 (575)
+-..+++++|+++|.++ +++++.+ +||+..+.++.|+.+. +.++..........
T Consensus 373 -----------------~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~-------r~~i~~~~~~~~~~ 428 (494)
T COG0464 373 -----------------IEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE-------RLEIFKIHLRDKKP 428 (494)
T ss_pred -----------------CCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH-------HHHHHHHHhcccCC
Confidence 12355688899999998 5544432 4999999999999876 22222222221111
Q ss_pred hhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHHHHHHH
Q 008176 516 SDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQY 560 (575)
Q Consensus 516 ~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~~ 560 (575)
. +.. .+.-+.+.+ .-+.++..|+..+++++.....++.
T Consensus 429 ~-~~~-~~~~~~l~~-----~t~~~sgadi~~i~~ea~~~~~~~~ 466 (494)
T COG0464 429 P-LAE-DVDLEELAE-----ITEGYSGADIAALVREAALEALREA 466 (494)
T ss_pred c-chh-hhhHHHHHH-----HhcCCCHHHHHHHHHHHHHHHHHHh
Confidence 0 000 011111111 1234888999999987766554443
No 31
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.76 E-value=4.5e-18 Score=169.12 Aligned_cols=168 Identities=29% Similarity=0.470 Sum_probs=104.9
Q ss_pred hhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
.|++ ++||++.+..+..++.....+ .+ .-.|+||+||||+||||||+.||+.
T Consensus 22 ~L~e-fiGQ~~l~~~l~i~i~aa~~r------------------~~---------~l~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 22 SLDE-FIGQEHLKGNLKILIRAAKKR------------------GE---------ALDHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp SCCC-S-S-HHHHHHHHHHHHHHHCT------------------TS------------EEEEESSTTSSHHHHHHHHHHH
T ss_pred CHHH-ccCcHHHHhhhHHHHHHHHhc------------------CC---------CcceEEEECCCccchhHHHHHHHhc
Confidence 4555 799999999988777421110 00 1268999999999999999999999
Q ss_pred hCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHh
Q 008176 354 VNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (575)
Q Consensus 354 l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~L 433 (575)
++.++...++..+... + + +...+.. ...+.|||||||+++.+. +|+.|+..|
T Consensus 74 ~~~~~~~~sg~~i~k~---~-d----l~~il~~------l~~~~ILFIDEIHRlnk~--------------~qe~Llpam 125 (233)
T PF05496_consen 74 LGVNFKITSGPAIEKA---G-D----LAAILTN------LKEGDILFIDEIHRLNKA--------------QQEILLPAM 125 (233)
T ss_dssp CT--EEEEECCC--SC---H-H----HHHHHHT--------TT-EEEECTCCC--HH--------------HHHHHHHHH
T ss_pred cCCCeEeccchhhhhH---H-H----HHHHHHh------cCCCcEEEEechhhccHH--------------HHHHHHHHh
Confidence 9999988887654421 1 1 1122211 135679999999999988 999999999
Q ss_pred hCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhh
Q 008176 434 EGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (575)
Q Consensus 434 Eg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l 513 (575)
|.+.+.+-- | .....+.+.++-.+..+|.+|+...
T Consensus 126 Ed~~idiii-G--~g~~ar~~~~~l~~FTligATTr~g------------------------------------------ 160 (233)
T PF05496_consen 126 EDGKIDIII-G--KGPNARSIRINLPPFTLIGATTRAG------------------------------------------ 160 (233)
T ss_dssp HCSEEEEEB-S--SSSS-BEEEEE----EEEEEESSGC------------------------------------------
T ss_pred ccCeEEEEe-c--cccccceeeccCCCceEeeeecccc------------------------------------------
Confidence 977664310 1 1122344566777777787776322
Q ss_pred cchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHh
Q 008176 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLT 550 (575)
Q Consensus 514 ~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~ 550 (575)
-+.+.+.+||..+..++.|+.+||.+|++
T Consensus 161 --------~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~ 189 (233)
T PF05496_consen 161 --------LLSSPLRDRFGIVLRLEFYSEEELAKIVK 189 (233)
T ss_dssp --------CTSHCCCTTSSEEEE----THHHHHHHHH
T ss_pred --------ccchhHHhhcceecchhcCCHHHHHHHHH
Confidence 15678999999999999999999999986
No 32
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.76 E-value=1.7e-17 Score=193.75 Aligned_cols=238 Identities=25% Similarity=0.394 Sum_probs=158.9
Q ss_pred CCCCCCCCCCCCC----ChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCccccc
Q 008176 254 GCWGGSNLGNKFP----TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (575)
Q Consensus 254 ~~~~~~~~~~~~~----t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~ 329 (575)
..|+|+|+..... ....+++.|.+.|+||+.+++.|...+..... |...+.. +
T Consensus 541 ~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~------------gl~~~~~-----------p 597 (857)
T PRK10865 541 ARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRA------------GLSDPNR-----------P 597 (857)
T ss_pred HHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHh------------cccCCCC-----------C
Confidence 3689999876433 34558899999999999999999999962211 1111111 1
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccc-----------cccccchhhhHHHHHhhhchhhHHhhc
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQ 395 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~-----------sg~vGe~~~~~l~~lf~~a~~~l~~~~ 395 (575)
.+.+||+||+|||||++|++||+.+ +.+++.++++++.. .+|+|......+.+... ...
T Consensus 598 ~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~-------~~p 670 (857)
T PRK10865 598 IGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVR-------RRP 670 (857)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHH-------hCC
Confidence 2468899999999999999999887 45789999887542 23445432223333222 134
Q ss_pred cCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHH
Q 008176 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (575)
Q Consensus 396 ~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~ 475 (575)
.+||+|||++++++. +++.|+++||.+.+. . .....++.+|.++|+|+|... + .
T Consensus 671 ~~vLllDEieka~~~--------------v~~~Ll~ile~g~l~--------d--~~gr~vd~rn~iiI~TSN~g~-~-~ 724 (857)
T PRK10865 671 YSVILLDEVEKAHPD--------------VFNILLQVLDDGRLT--------D--GQGRTVDFRNTVVIMTSNLGS-D-L 724 (857)
T ss_pred CCeEEEeehhhCCHH--------------HHHHHHHHHhhCcee--------c--CCceEEeecccEEEEeCCcch-H-H
Confidence 589999999999887 999999999843332 1 123467889999999999642 1 1
Q ss_pred HHhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHH
Q 008176 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (575)
Q Consensus 476 i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~ 555 (575)
+.+ + |+.. ......+.++.. .+..|.|+|++|++.++.|.+++.+++.+|+...++.
T Consensus 725 ~~~-~------~~~~----------~~~~~~~~~~~~------~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 725 IQE-R------FGEL----------DYAHMKELVLGV------VSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred HHH-h------cccc----------chHHHHHHHHHH------HcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 111 1 1111 011111222222 2334899999999999999999999999999865555
Q ss_pred HHHHHHHHHhhCCCeEEeC
Q 008176 556 LGKQYRKMFQMNGVSASVS 574 (575)
Q Consensus 556 L~k~~~~~~~~~~i~l~~~ 574 (575)
+. +.+...|+.++++
T Consensus 782 l~----~rl~~~gi~l~is 796 (857)
T PRK10865 782 LY----KRLEERGYEIHIS 796 (857)
T ss_pred HH----HHHHhCCCcCcCC
Confidence 43 3345567776654
No 33
>CHL00181 cbbX CbbX; Provisional
Probab=99.75 E-value=1.1e-17 Score=172.93 Aligned_cols=192 Identities=21% Similarity=0.276 Sum_probs=130.9
Q ss_pred CCChHHHHhhhcccccChHHHHHHHHHHHHhh-hhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCCh
Q 008176 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNH-YMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (575)
Q Consensus 265 ~~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~-~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGK 343 (575)
....+++.+.|++.++|++.+|++|.+++... +.+.+.. .|...+ -+..|+||+|||||||
T Consensus 11 ~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~------~g~~~~------------~~~~~ill~G~pGtGK 72 (287)
T CHL00181 11 KTQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKN------LGLTSS------------NPGLHMSFTGSPGTGK 72 (287)
T ss_pred ccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH------cCCCCC------------CCCceEEEECCCCCCH
Confidence 34567899999988999999999999887531 1111111 111111 1235799999999999
Q ss_pred HHHHHHHHHHh-------CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhccc
Q 008176 344 TLLAKTLARYV-------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (575)
Q Consensus 344 TtLAraLA~~l-------~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~ 416 (575)
|++|+++|+.+ ..+++.++++++. ..|+|+. .....+.+.. +.++||||||++.+...+.
T Consensus 73 T~lAr~la~~~~~~g~~~~~~~~~v~~~~l~-~~~~g~~-~~~~~~~l~~-------a~ggVLfIDE~~~l~~~~~---- 139 (287)
T CHL00181 73 TTVALKMADILYKLGYIKKGHLLTVTRDDLV-GQYIGHT-APKTKEVLKK-------AMGGVLFIDEAYYLYKPDN---- 139 (287)
T ss_pred HHHHHHHHHHHHHcCCCCCCceEEecHHHHH-HHHhccc-hHHHHHHHHH-------ccCCEEEEEccchhccCCC----
Confidence 99999999875 2368888888776 4577875 3334444443 3578999999999864321
Q ss_pred CCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhhc
Q 008176 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (575)
Q Consensus 417 ~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~~ 496 (575)
..+.+ ..+++.|+++||. ...++++|++++...++...
T Consensus 140 ~~~~~-~e~~~~L~~~me~---------------------~~~~~~vI~ag~~~~~~~~~-------------------- 177 (287)
T CHL00181 140 ERDYG-SEAIEILLQVMEN---------------------QRDDLVVIFAGYKDRMDKFY-------------------- 177 (287)
T ss_pred ccchH-HHHHHHHHHHHhc---------------------CCCCEEEEEeCCcHHHHHHH--------------------
Confidence 12233 3489999999983 12457788887643222111
Q ss_pred cCCCChHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHH
Q 008176 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKN 554 (575)
Q Consensus 497 ~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~ 554 (575)
...|++.+||+..+.|++++.+++.+|+...+.
T Consensus 178 -------------------------~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 178 -------------------------ESNPGLSSRIANHVDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred -------------------------hcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHH
Confidence 145888899999999999999999988874443
No 34
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.75 E-value=8.5e-18 Score=193.69 Aligned_cols=216 Identities=21% Similarity=0.289 Sum_probs=151.1
Q ss_pred cccChHHHHHHHHHHHHhhhh--hHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
+|.|++.+|+.|.+.+....+ ..+.... +. .+.++||+||||||||++|+++|+.++
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g--------------------~~-~~~giLL~GppGtGKT~lakalA~e~~ 512 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMG--------------------IR-PPKGVLLFGPPGTGKTLLAKAVATESG 512 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcC--------------------CC-CCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 489999999999999874332 2222211 11 236799999999999999999999999
Q ss_pred CCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 356 ~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+|+.++++++. ..|+|++ ++.++.+|..+.. ..++||||||||.+.+.|.... .....+++.++||..|||
T Consensus 513 ~~fi~v~~~~l~-~~~vGes-e~~i~~~f~~A~~----~~p~iifiDEid~l~~~r~~~~--~~~~~~~~~~~lL~~ldg 584 (733)
T TIGR01243 513 ANFIAVRGPEIL-SKWVGES-EKAIREIFRKARQ----AAPAIIFFDEIDAIAPARGARF--DTSVTDRIVNQLLTEMDG 584 (733)
T ss_pred CCEEEEehHHHh-hcccCcH-HHHHHHHHHHHHh----cCCEEEEEEChhhhhccCCCCC--CccHHHHHHHHHHHHhhc
Confidence 999999999987 5699998 7888999988753 5789999999999998764321 122335588999999995
Q ss_pred CeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHh-hhcccCCCCCCchhhhhccCCCChHHHHHHHHhhh
Q 008176 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (575)
Q Consensus 436 ~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~-rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l 513 (575)
. ....++++|+|||.++ ++.++.+ +||+..|.++.|+.+.. .++.......+
T Consensus 585 ~-------------------~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R-------~~i~~~~~~~~ 638 (733)
T TIGR01243 585 I-------------------QELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEAR-------KEIFKIHTRSM 638 (733)
T ss_pred c-------------------cCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHH-------HHHHHHHhcCC
Confidence 1 1345788999999887 6666654 69999999999987751 22222111111
Q ss_pred cchhhhhcCCCCc-cccccceEEEcCCCCHHHHHHHHhhhHHHHHH
Q 008176 514 ESSDLIAYGLIPE-FVGRFPVLVSLLALTENQLVQVLTEPKNALGK 558 (575)
Q Consensus 514 ~~~dl~~~gl~Pe-fi~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k 558 (575)
. +.+. .+..+. -..+.++-.|+..++.++....++
T Consensus 639 ~--------~~~~~~l~~la--~~t~g~sgadi~~~~~~A~~~a~~ 674 (733)
T TIGR01243 639 P--------LAEDVDLEELA--EMTEGYTGADIEAVCREAAMAALR 674 (733)
T ss_pred C--------CCccCCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHH
Confidence 1 1111 011111 113468888998888876654444
No 35
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.1e-17 Score=185.20 Aligned_cols=223 Identities=22% Similarity=0.311 Sum_probs=158.4
Q ss_pred cccChHHHHHHHHHHHHhh--hhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 278 FVIGQERAKKVLSVAVYNH--YMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~--~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
+|.|..++|+.|.+.+.++ |..++.....+ . +.++||+||||||||.||.++|..++
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr--------------------~-~~giLLyGppGcGKT~la~a~a~~~~ 726 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLR--------------------L-RTGILLYGPPGCGKTLLASAIASNSN 726 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcc--------------------c-ccceEEECCCCCcHHHHHHHHHhhCC
Confidence 4899999999999999743 44455444332 2 36899999999999999999999999
Q ss_pred CCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 356 ~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
..|+.+.+.++. ..|+|.+ ++.++++|.+|. +++|||||+||+|.++++|+..+.|-. +++.|+||..|||
T Consensus 727 ~~fisvKGPElL-~KyIGaS-Eq~vR~lF~rA~----~a~PCiLFFDEfdSiAPkRGhDsTGVT---DRVVNQlLTelDG 797 (952)
T KOG0735|consen 727 LRFISVKGPELL-SKYIGAS-EQNVRDLFERAQ----SAKPCILFFDEFDSIAPKRGHDSTGVT---DRVVNQLLTELDG 797 (952)
T ss_pred eeEEEecCHHHH-HHHhccc-HHHHHHHHHHhh----ccCCeEEEeccccccCcccCCCCCCch---HHHHHHHHHhhcc
Confidence 999999999988 6799998 899999999986 478999999999999999876543332 4599999999997
Q ss_pred CeecccCCCcccCCCCCcceecCCCEEEEecCCCcCh-HH-HHHhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhh
Q 008176 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EK-TISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (575)
Q Consensus 436 ~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL-~~-~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l 513 (575)
-.. .+.+.++++|..+|| |. +++.+|+|+-+.-+.|+..+ +=++.+.+...+
T Consensus 798 ~Eg-------------------l~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~e-------Rl~il~~ls~s~ 851 (952)
T KOG0735|consen 798 AEG-------------------LDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPE-------RLEILQVLSNSL 851 (952)
T ss_pred ccc-------------------cceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHH-------HHHHHHHHhhcc
Confidence 321 234666777777774 44 45667999999999998765 112233333222
Q ss_pred cchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHhhCC
Q 008176 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNG 568 (575)
Q Consensus 514 ~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~~~~~~~~~~ 568 (575)
...+ ..+ +..+ ...-..++-.||..++.. +-+....+++...+
T Consensus 852 ~~~~----~vd---l~~~--a~~T~g~tgADlq~ll~~---A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 852 LKDT----DVD---LECL--AQKTDGFTGADLQSLLYN---AQLAAVHEILKRED 894 (952)
T ss_pred CCcc----ccc---hHHH--hhhcCCCchhhHHHHHHH---HHHHHHHHHHHhcC
Confidence 2211 011 1111 123456888899888873 44444455555444
No 36
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2e-18 Score=175.35 Aligned_cols=171 Identities=26% Similarity=0.390 Sum_probs=131.3
Q ss_pred cccChHHHHHHHHHHHHhhh--hhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 278 FVIGQERAKKVLSVAVYNHY--MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~--~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
+|-|.+..++++.+.+..+. ..+|..-..+ . +.+|+|+|+||||||.||+|+|+...
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGik--------------------p-PKGVIlyG~PGTGKTLLAKAVANqTS 244 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIK--------------------P-PKGVILYGEPGTGKTLLAKAVANQTS 244 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCC--------------------C-CCeeEEeCCCCCchhHHHHHHhcccc
Confidence 48999999999999997432 2334333332 2 36899999999999999999999999
Q ss_pred CCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 356 ~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
..|+++-++++. ..|.|++ -+.++++|..|+. ..|+|+||||||++..+|-+.++++. +++|.++|+++..
T Consensus 245 ATFlRvvGseLi-QkylGdG-pklvRqlF~vA~e----~apSIvFiDEIdAiGtKRyds~Sgge---rEiQrtmLELLNQ 315 (440)
T KOG0726|consen 245 ATFLRVVGSELI-QKYLGDG-PKLVRELFRVAEE----HAPSIVFIDEIDAIGTKRYDSNSGGE---REIQRTMLELLNQ 315 (440)
T ss_pred hhhhhhhhHHHH-HHHhccc-hHHHHHHHHHHHh----cCCceEEeehhhhhccccccCCCccH---HHHHHHHHHHHHh
Confidence 999999999998 4699998 7899999998864 68999999999999999887665554 3378887777651
Q ss_pred CeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHH-HHHhhhcccCCCCCCchhhh
Q 008176 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEK-TISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 436 ~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~-~i~~rr~~~~IgF~~p~~e~ 494 (575)
-..++.++ ++-+|+++|..+ ++. +++.+|.|+.|+|+.|+...
T Consensus 316 --------ldGFdsrg--------DvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~T 360 (440)
T KOG0726|consen 316 --------LDGFDSRG--------DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 360 (440)
T ss_pred --------ccCccccC--------CeEEEEecccccccCHhhcCCCccccccccCCCchhh
Confidence 00122222 255566666554 655 56788999999999998865
No 37
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.75 E-value=1.2e-17 Score=179.91 Aligned_cols=173 Identities=24% Similarity=0.397 Sum_probs=126.5
Q ss_pred hcccccChHHHHHHHHHHHHhhhhh--HhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHH
Q 008176 275 LDKFVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 275 Ld~~VvGqd~ak~~L~~al~~~~~r--~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~ 352 (575)
+++ |.|++.+|+.|.+.+..+..+ .+.... +. ++.++||+||||||||++|+++|+
T Consensus 144 ~~d-igGl~~~k~~l~~~v~~pl~~~~~~~~~G--------------------l~-~pkgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 144 YSD-IGGLDIQKQEIREAVELPLTCPELYEQIG--------------------ID-PPRGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred HHH-cCCHHHHHHHHHHHHHHHhcCHHHHHhcC--------------------CC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 444 899999999999999754432 222221 11 247899999999999999999999
Q ss_pred HhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHH
Q 008176 353 YVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (575)
Q Consensus 353 ~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~ 432 (575)
.++.+++.+.++++. ..|+|+. ...+++.|..+.. ..|+||||||+|.+..+|.+...+.+....++...|+..
T Consensus 202 ~l~~~fi~i~~s~l~-~k~~ge~-~~~lr~lf~~A~~----~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ 275 (398)
T PTZ00454 202 HTTATFIRVVGSEFV-QKYLGEG-PRMVRDVFRLARE----NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQ 275 (398)
T ss_pred hcCCCEEEEehHHHH-HHhcchh-HHHHHHHHHHHHh----cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHH
Confidence 999999999988876 4588886 6677888876542 578999999999998876544333333333455566666
Q ss_pred hhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHH-hhhcccCCCCCCchhhh
Q 008176 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 433 LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~-~rr~~~~IgF~~p~~e~ 494 (575)
|++. -...++.+|+++|.++ ++.++. .+|++..|.|+.|+.+.
T Consensus 276 ld~~-------------------~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~ 320 (398)
T PTZ00454 276 MDGF-------------------DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 320 (398)
T ss_pred hhcc-------------------CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHH
Confidence 6641 1134577888888776 666554 46999999999998775
No 38
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.4e-17 Score=172.40 Aligned_cols=235 Identities=19% Similarity=0.300 Sum_probs=162.3
Q ss_pred CCCChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCCh
Q 008176 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (575)
Q Consensus 264 ~~~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGK 343 (575)
....|.++...+++ |-|.+.+|+++.+.|..+.++ ++.+....+..++.++||+|||||||
T Consensus 80 ~~v~p~~I~v~f~D-IggLe~v~~~L~e~VilPlr~------------------pelF~~g~Ll~p~kGiLL~GPpG~GK 140 (386)
T KOG0737|consen 80 DVVPPSEIGVSFDD-IGGLEEVKDALQELVILPLRR------------------PELFAKGKLLRPPKGILLYGPPGTGK 140 (386)
T ss_pred cccchhhceeehhh-ccchHHHHHHHHHHHhhcccc------------------hhhhcccccccCCccceecCCCCchH
Confidence 45577777778887 799999999999999744332 11122222333568999999999999
Q ss_pred HHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchH
Q 008176 344 TLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (575)
Q Consensus 344 TtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e 423 (575)
|.+|+++|++.+..|+-+.++.++ ..|.|++ ++.++.+|..+. +-.|+||||||+|.+...|. .+.++.-.
T Consensus 141 TmlAKA~Akeaga~fInv~~s~lt-~KWfgE~-eKlv~AvFslAs----Kl~P~iIFIDEvds~L~~R~---s~dHEa~a 211 (386)
T KOG0737|consen 141 TMLAKAIAKEAGANFINVSVSNLT-SKWFGEA-QKLVKAVFSLAS----KLQPSIIFIDEVDSFLGQRR---STDHEATA 211 (386)
T ss_pred HHHHHHHHHHcCCCcceeeccccc-hhhHHHH-HHHHHHHHhhhh----hcCcceeehhhHHHHHhhcc---cchHHHHH
Confidence 999999999999999999999999 4799998 888888888775 35899999999999998872 23343334
Q ss_pred HHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCc-ChHHHHHhhhcccCCCCCCchhhhhccCCCCh
Q 008176 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV-DIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (575)
Q Consensus 424 ~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~-dL~~~i~~rr~~~~IgF~~p~~e~~~~~~l~~ 502 (575)
.+.+.+...-||.... +...++++++||.+ |+++++.+| +.+.+..+.|+.++ +
T Consensus 212 ~mK~eFM~~WDGl~s~-----------------~~~rVlVlgATNRP~DlDeAiiRR-~p~rf~V~lP~~~q-------R 266 (386)
T KOG0737|consen 212 MMKNEFMALWDGLSSK-----------------DSERVLVLGATNRPFDLDEAIIRR-LPRRFHVGLPDAEQ-------R 266 (386)
T ss_pred HHHHHHHHHhccccCC-----------------CCceEEEEeCCCCCccHHHHHHHh-CcceeeeCCCchhh-------H
Confidence 4667777777763221 22247888888877 599998755 45666667776655 3
Q ss_pred HHHHHHHHhhhcchhhhhcCCCCcc-ccccceEEEcCCCCHHHHHHHHhhhHHHHHHHHH
Q 008176 503 AVVTSSLMETVESSDLIAYGLIPEF-VGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561 (575)
Q Consensus 503 ~~~~~~ll~~l~~~dl~~~gl~Pef-i~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~~~ 561 (575)
++++.-+++.-.. .+.+ +..+. -.-+.||-.||.+.+..+.-...+.+-
T Consensus 267 ~kILkviLk~e~~--------e~~vD~~~iA--~~t~GySGSDLkelC~~Aa~~~ire~~ 316 (386)
T KOG0737|consen 267 RKILKVILKKEKL--------EDDVDLDEIA--QMTEGYSGSDLKELCRLAALRPIRELL 316 (386)
T ss_pred HHHHHHHhccccc--------CcccCHHHHH--HhcCCCcHHHHHHHHHHHhHhHHHHHH
Confidence 3444444332221 1111 11111 123569999999988866555555443
No 39
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.74 E-value=4.1e-17 Score=168.41 Aligned_cols=194 Identities=21% Similarity=0.288 Sum_probs=133.0
Q ss_pred CCCChHHHHhhhcccccChHHHHHHHHHHHHhh-hhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCC
Q 008176 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNH-YMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSG 342 (575)
Q Consensus 264 ~~~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~-~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTG 342 (575)
+....+++.+.|++.++|++++|+.|.+++... +.+.+.. .|. ....+..+++|+||||||
T Consensus 9 ~~~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~------~g~------------~~~~~~~~vll~G~pGTG 70 (284)
T TIGR02880 9 EASGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQR------LGL------------ASAAPTLHMSFTGNPGTG 70 (284)
T ss_pred hhccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH------hCC------------CcCCCCceEEEEcCCCCC
Confidence 345678899999988999999999999887632 1111111 111 111123589999999999
Q ss_pred hHHHHHHHHHHhC-------CCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcc
Q 008176 343 KTLLAKTLARYVN-------VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (575)
Q Consensus 343 KTtLAraLA~~l~-------~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~ 415 (575)
||++|+++|+.+. .+++.++++++.. .|+|+. ...+.+.++. +.++||||||++.+...+.
T Consensus 71 KT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~-~~~g~~-~~~~~~~~~~-------a~~gvL~iDEi~~L~~~~~--- 138 (284)
T TIGR02880 71 KTTVALRMAQILHRLGYVRKGHLVSVTRDDLVG-QYIGHT-APKTKEILKR-------AMGGVLFIDEAYYLYRPDN--- 138 (284)
T ss_pred HHHHHHHHHHHHHHcCCcccceEEEecHHHHhH-hhcccc-hHHHHHHHHH-------ccCcEEEEechhhhccCCC---
Confidence 9999999998762 3688899888763 578876 3444555444 3568999999999854321
Q ss_pred cCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhh
Q 008176 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (575)
Q Consensus 416 ~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~ 495 (575)
..+. +..+++.|++.|+.. ..++++|++++...++...
T Consensus 139 -~~~~-~~~~~~~Ll~~le~~---------------------~~~~~vI~a~~~~~~~~~~------------------- 176 (284)
T TIGR02880 139 -ERDY-GQEAIEILLQVMENQ---------------------RDDLVVILAGYKDRMDSFF------------------- 176 (284)
T ss_pred -ccch-HHHHHHHHHHHHhcC---------------------CCCEEEEEeCCcHHHHHHH-------------------
Confidence 1122 234899999999831 2457778887643221111
Q ss_pred ccCCCChHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHH
Q 008176 496 RAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (575)
Q Consensus 496 ~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~ 555 (575)
.+.|+|.+||+..+.|++|+.+|+.+|+...+..
T Consensus 177 --------------------------~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 177 --------------------------ESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred --------------------------hhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 1458889999999999999999999888754443
No 40
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.6e-18 Score=170.68 Aligned_cols=170 Identities=24% Similarity=0.388 Sum_probs=129.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|-|.+..+++|.+++..+..+ ++-++++.+.+ +.++|++||||||||.+||+.|...+..
T Consensus 172 DiGGldkQIqELvEAiVLpmth------------------~ekF~~lgi~p-PKGvLmYGPPGTGKTlmARAcAaqT~aT 232 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTH------------------KEKFENLGIRP-PKGVLMYGPPGTGKTLMARACAAQTNAT 232 (424)
T ss_pred ccccHHHHHHHHHHHhcccccc------------------HHHHHhcCCCC-CCceEeeCCCCCcHHHHHHHHHHhccch
Confidence 4899999999999999643321 11122222222 3689999999999999999999999999
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhh---
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE--- 434 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LE--- 434 (575)
|..+.+..+.+. |+|.+ .+.+++.|..+.. ..|+||||||+|++..+|.+..-.+| +++|.++|+++.
T Consensus 233 FLKLAgPQLVQM-fIGdG-AkLVRDAFaLAKE----kaP~IIFIDElDAIGtKRfDSek~GD---REVQRTMLELLNQLD 303 (424)
T KOG0652|consen 233 FLKLAGPQLVQM-FIGDG-AKLVRDAFALAKE----KAPTIIFIDELDAIGTKRFDSEKAGD---REVQRTMLELLNQLD 303 (424)
T ss_pred HHHhcchHHHhh-hhcch-HHHHHHHHHHhhc----cCCeEEEEechhhhcccccccccccc---HHHHHHHHHHHHhhc
Confidence 999999888854 99998 8899999988763 58999999999999998875433333 347888777765
Q ss_pred CCeecccCCCcccCCCCCcceecCCCEEEEecCCCcCh-HH-HHHhhhcccCCCCCCchhhh
Q 008176 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EK-TISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 435 g~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL-~~-~i~~rr~~~~IgF~~p~~e~ 494 (575)
|+. ....+-+|+++|..|+ +. +++.+|.++.|+|+.|+++.
T Consensus 304 GFs-------------------s~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~a 346 (424)
T KOG0652|consen 304 GFS-------------------SDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEA 346 (424)
T ss_pred CCC-------------------CccceEEEeecccccccCHHHhhcccccccccCCCCChHH
Confidence 321 2345778899999884 33 45566999999999998765
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.74 E-value=7.3e-17 Score=163.99 Aligned_cols=183 Identities=17% Similarity=0.360 Sum_probs=122.4
Q ss_pred HhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHH
Q 008176 272 CKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLA 351 (575)
Q Consensus 272 ~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA 351 (575)
.++|++ ++|++.+|+.|.+.+...... .... ..|. .......+++|+||||||||++|+++|
T Consensus 2 ~~~l~~-~~Gl~~vk~~i~~~~~~~~~~--~~~~---~~g~------------~~~~~~~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 2 ERELSR-MVGLDEVKALIKEIYAWIQIN--EKRK---EEGL------------KTSKQVLHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred hHHHHH-hcChHHHHHHHHHHHHHHHHH--HHHH---HcCC------------CCCCCcceEEEEcCCCCCHHHHHHHHH
Confidence 356777 799999999999887532111 0000 1111 111223689999999999999999999
Q ss_pred HHh-------CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHH
Q 008176 352 RYV-------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (575)
Q Consensus 352 ~~l-------~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~ 424 (575)
+.+ ..+++.++++++. ..|+|+. ...+.+.+..+ .++||||||+|.+... ...+. ...
T Consensus 64 ~~l~~~~~~~~~~~v~~~~~~l~-~~~~g~~-~~~~~~~~~~a-------~~~VL~IDE~~~L~~~-----~~~~~-~~~ 128 (261)
T TIGR02881 64 KLFKEMNVLSKGHLIEVERADLV-GEYIGHT-AQKTREVIKKA-------LGGVLFIDEAYSLARG-----GEKDF-GKE 128 (261)
T ss_pred HHHHhcCcccCCceEEecHHHhh-hhhccch-HHHHHHHHHhc-------cCCEEEEechhhhccC-----Cccch-HHH
Confidence 875 2467788888876 4578876 45556666543 4689999999998632 11112 234
Q ss_pred HHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhhccCCCChHH
Q 008176 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (575)
Q Consensus 425 vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~ 504 (575)
+++.|++.||. ...++++|++++..+++...
T Consensus 129 ~i~~Ll~~~e~---------------------~~~~~~vila~~~~~~~~~~---------------------------- 159 (261)
T TIGR02881 129 AIDTLVKGMED---------------------NRNEFVLILAGYSDEMDYFL---------------------------- 159 (261)
T ss_pred HHHHHHHHHhc---------------------cCCCEEEEecCCcchhHHHH----------------------------
Confidence 78999999983 12346667776643322111
Q ss_pred HHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhH
Q 008176 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPK 553 (575)
Q Consensus 505 ~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l 553 (575)
.+.|.+.+||+..+.|++++.+++.+|+....
T Consensus 160 -----------------~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~ 191 (261)
T TIGR02881 160 -----------------SLNPGLRSRFPISIDFPDYTVEELMEIAERMV 191 (261)
T ss_pred -----------------hcChHHHhccceEEEECCCCHHHHHHHHHHHH
Confidence 14578888888889999999999988887443
No 42
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.73 E-value=2.9e-17 Score=176.48 Aligned_cols=171 Identities=27% Similarity=0.415 Sum_probs=122.4
Q ss_pred cccChHHHHHHHHHHHHhhhhh--HhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r--~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
+|.|.+++++.|.+.+.....+ .+.... +. ++.++||+||||||||++|+++|+.++
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g--------------------~~-~p~gvLL~GppGtGKT~lAkaia~~~~ 190 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVG--------------------IE-PPKGVLLYGPPGTGKTLLAKAVAHETN 190 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcC--------------------CC-CCCceEEECCCCCChHHHHHHHHHHhC
Confidence 4899999999999999744332 222211 11 236899999999999999999999999
Q ss_pred CCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 356 ~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+|+.++++++. ..|+|+. ...++.+|..+.. ..++||||||+|.+...+...+.+.+ ..++..|++++..
T Consensus 191 ~~~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~----~~p~IlfiDEiD~l~~~r~~~~~~~~---~~~~~~l~~lL~~ 261 (389)
T PRK03992 191 ATFIRVVGSELV-QKFIGEG-ARLVRELFELARE----KAPSIIFIDEIDAIAAKRTDSGTSGD---REVQRTLMQLLAE 261 (389)
T ss_pred CCEEEeehHHHh-Hhhccch-HHHHHHHHHHHHh----cCCeEEEEechhhhhcccccCCCCcc---HHHHHHHHHHHHh
Confidence 999999999887 4588886 6777888876642 46899999999999877654332222 2255555555531
Q ss_pred CeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHh-hhcccCCCCCCchhhh
Q 008176 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (575)
Q Consensus 436 ~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~-rr~~~~IgF~~p~~e~ 494 (575)
.. + .....++.+|+++|..+ ++.++.+ .||+..|.|+.|+.+.
T Consensus 262 ld------~----------~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~ 306 (389)
T PRK03992 262 MD------G----------FDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEG 306 (389)
T ss_pred cc------c----------cCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHH
Confidence 00 0 01234678888888776 6666543 5899999999998775
No 43
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.73 E-value=5.4e-17 Score=171.26 Aligned_cols=151 Identities=14% Similarity=0.227 Sum_probs=110.6
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhH-HhhccCeEeehhHhhhh
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNV-AAAQQGIVYIDEVDKIT 408 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l-~~~~~~ILfIDEID~l~ 408 (575)
+..++|+||||||||++|+++|+.++.+++.+++.++. ++|+|++ ++.+++.|..|.... .+..+|||||||||++.
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~-sk~vGEs-Ek~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~ 225 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE-SENAGEP-GKLIRQRYREAADIIKKKGKMSCLFINDLDAGA 225 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh-cCcCCcH-HHHHHHHHHHHHHHhhccCCCeEEEEehhhhcC
Confidence 36788999999999999999999999999999999998 6799998 899999999886422 23579999999999999
Q ss_pred HhhhhcccCCCcchHHHHHHHHHHhhCC-eecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHH-HhhhcccCC
Q 008176 409 KKAESLNISRDVSGEGVQQALLKMLEGT-VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTI-SERRQDSSI 485 (575)
Q Consensus 409 ~~r~~~~~~~~~~~e~vq~aLL~~LEg~-~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i-~~rr~~~~I 485 (575)
+.|.. .+.....+.+..+|+.+||+- .+.++ |. .. ..-....+.+|+|||.++ |+.++ +.+||++.+
T Consensus 226 g~r~~--~~~tv~~qiV~~tLLnl~D~p~~v~l~--G~-w~-----~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i 295 (413)
T PLN00020 226 GRFGT--TQYTVNNQMVNGTLMNIADNPTNVSLG--GD-WR-----EKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 295 (413)
T ss_pred CCCCC--CCcchHHHHHHHHHHHHhcCCcccccc--cc-cc-----ccccCCCceEEEeCCCcccCCHhHcCCCCCCcee
Confidence 88752 233333344568999999952 11111 10 00 011345688899999888 55544 345888865
Q ss_pred CCCCchhhh
Q 008176 486 GFGAPVRAN 494 (575)
Q Consensus 486 gF~~p~~e~ 494 (575)
..|+.+.
T Consensus 296 --~lPd~e~ 302 (413)
T PLN00020 296 --WAPTRED 302 (413)
T ss_pred --CCCCHHH
Confidence 4677665
No 44
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.72 E-value=6.2e-17 Score=178.24 Aligned_cols=166 Identities=23% Similarity=0.353 Sum_probs=122.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|.|++.+|+.+.+.... +....... | + ..++++||+||||||||++|+++|+.++.+
T Consensus 229 dvgGl~~lK~~l~~~~~~-~~~~~~~~------g--------------l-~~pkGILL~GPpGTGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTS-FSKQASNY------G--------------L-PTPRGLLLVGIQGTGKSLTAKAIANDWQLP 286 (489)
T ss_pred HhcCHHHHHHHHHHHHHH-hhHHHHhc------C--------------C-CCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 489999999988765431 11100000 1 0 123789999999999999999999999999
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCe
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~ 437 (575)
++.++++.+. .+|+|++ +..++++|..++ ...||||||||||++...+... +......++.+.|+..|++
T Consensus 287 ~~~l~~~~l~-~~~vGes-e~~l~~~f~~A~----~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~-- 356 (489)
T CHL00195 287 LLRLDVGKLF-GGIVGES-ESRMRQMIRIAE----ALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSE-- 356 (489)
T ss_pred EEEEEhHHhc-ccccChH-HHHHHHHHHHHH----hcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhc--
Confidence 9999999877 5799997 778888887664 3579999999999987653321 1222334578888888873
Q ss_pred ecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHH-HhhhcccCCCCCCchhhh
Q 008176 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTI-SERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 438 v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i-~~rr~~~~IgF~~p~~e~ 494 (575)
..+++++|+|+|..+ +++++ +.+||+..+.++.|+.+.
T Consensus 357 -------------------~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~e 396 (489)
T CHL00195 357 -------------------KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEE 396 (489)
T ss_pred -------------------CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHH
Confidence 124578889988876 66655 456999999999998776
No 45
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.7e-17 Score=179.20 Aligned_cols=213 Identities=28% Similarity=0.367 Sum_probs=157.4
Q ss_pred CCCCCCCCCCCCCChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccE
Q 008176 254 GCWGGSNLGNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNI 333 (575)
Q Consensus 254 ~~~~~~~~~~~~~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~V 333 (575)
-+|+..... .......++.||++-.|.+.+|+++.+.|.-...+ . .. ++.+
T Consensus 390 LPWgk~S~E--n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLr---g-----------------------s~-qGkI 440 (906)
T KOG2004|consen 390 LPWGKSSTE--NLDLARAKEILDEDHYGMEDVKERILEFIAVGKLR---G-----------------------SV-QGKI 440 (906)
T ss_pred CCCCCCChh--hhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhc---c-----------------------cC-CCcE
Confidence 467665443 34566778899999999999999999998511110 0 01 2444
Q ss_pred E-EEcCCCCChHHHHHHHHHHhCCCEEEeccccccc--------cccccchhhhHHHHHhhhchhhHHhhccCeEeehhH
Q 008176 334 L-LMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (575)
Q Consensus 334 L-L~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~--------sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEI 404 (575)
| |+||||+|||++++.||+.+|..|++++...+.. .-|+|..+.+.+..+-... -.+.+++||||
T Consensus 441 lCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~------t~NPliLiDEv 514 (906)
T KOG2004|consen 441 LCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVK------TENPLILIDEV 514 (906)
T ss_pred EEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhC------CCCceEEeehh
Confidence 4 9999999999999999999999999988765543 2378877777666554333 24568999999
Q ss_pred hhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHhhhccc
Q 008176 405 DKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDS 483 (575)
Q Consensus 405 D~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~rr~~~ 483 (575)
|++... ..+| -.++||++|| ||++..+.+|...+.+|-+.++||||+|..+ +..++++|+.
T Consensus 515 DKlG~g-----~qGD-----PasALLElLD------PEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRME-- 576 (906)
T KOG2004|consen 515 DKLGSG-----HQGD-----PASALLELLD------PEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRME-- 576 (906)
T ss_pred hhhCCC-----CCCC-----hHHHHHHhcC------hhhccchhhhccccccchhheEEEEeccccccCChhhhhhhh--
Confidence 999731 1222 4789999999 9999999999999999999999999999887 6666666542
Q ss_pred CCCCCCchhhhhccCCCChHHHHHHHHhhhcchhhhhcCCCCcccc
Q 008176 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVG 529 (575)
Q Consensus 484 ~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~ 529 (575)
.+.+.++..++...-..+++.+..+.++|+.|+.++
T Consensus 577 ----------vIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~ 612 (906)
T KOG2004|consen 577 ----------VIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVK 612 (906)
T ss_pred ----------eeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcC
Confidence 222344455555666677888888888999886554
No 46
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.71 E-value=9.5e-17 Score=174.57 Aligned_cols=171 Identities=25% Similarity=0.386 Sum_probs=122.4
Q ss_pred cccChHHHHHHHHHHHHhhhh--hHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
+|.|++.+++.+.+++..... .++... .+. ++.++||+||||||||++|+++|+.++
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~--------------------gi~-~p~gVLL~GPPGTGKT~LAraIA~el~ 242 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDI--------------------GIK-PPKGVILYGPPGTGKTLLAKAVANETS 242 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhc--------------------CCC-CCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 479999999999999963322 122211 111 236899999999999999999999999
Q ss_pred CCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 356 ~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+|+.+.++++. ..|+|+. ...++..|..+.. ..++||||||||.+..+|.....+.+....++...|+..|+|
T Consensus 243 ~~fi~V~~seL~-~k~~Ge~-~~~vr~lF~~A~~----~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg 316 (438)
T PTZ00361 243 ATFLRVVGSELI-QKYLGDG-PKLVRELFRVAEE----NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDG 316 (438)
T ss_pred CCEEEEecchhh-hhhcchH-HHHHHHHHHHHHh----CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhh
Confidence 999999998887 4588887 6677888876653 468999999999998776543333332222234445555553
Q ss_pred CeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHH-hhhcccCCCCCCchhhh
Q 008176 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 436 ~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~-~rr~~~~IgF~~p~~e~ 494 (575)
. ....++.+|+++|..+ ++.++. .+|++..|.|+.|+.+.
T Consensus 317 ~-------------------~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~ 358 (438)
T PTZ00361 317 F-------------------DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKT 358 (438)
T ss_pred h-------------------cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHH
Confidence 1 1233577788888776 666654 46899999999998775
No 47
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.71 E-value=4.6e-17 Score=179.63 Aligned_cols=176 Identities=27% Similarity=0.384 Sum_probs=127.4
Q ss_pred hhcccccChHHHHHHHHHHHHhhhh--hHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLA 351 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA 351 (575)
.+++ |.|++.+++.+.+++...+. .++.....+ ++.++||+||||||||++|+++|
T Consensus 180 ~~~d-IgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~---------------------~p~GILLyGPPGTGKT~LAKAlA 237 (512)
T TIGR03689 180 TYAD-IGGLDSQIEQIRDAVELPFLHPELYREYDLK---------------------PPKGVLLYGPPGCGKTLIAKAVA 237 (512)
T ss_pred CHHH-cCChHHHHHHHHHHHHHHhhCHHHHHhccCC---------------------CCcceEEECCCCCcHHHHHHHHH
Confidence 3454 89999999999999975433 223222211 23689999999999999999999
Q ss_pred HHhCCC----------EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcc
Q 008176 352 RYVNVP----------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVS 421 (575)
Q Consensus 352 ~~l~~~----------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~ 421 (575)
+.++.+ |+.+.++++. ..|+|+. ++.++.+|..+........++||||||+|.+..+|... .+.+.
T Consensus 238 ~eL~~~i~~~~~~~~~fl~v~~~eLl-~kyvGet-e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~-~s~d~- 313 (512)
T TIGR03689 238 NSLAQRIGAETGDKSYFLNIKGPELL-NKYVGET-ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG-VSSDV- 313 (512)
T ss_pred HhhccccccccCCceeEEeccchhhc-ccccchH-HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC-ccchH-
Confidence 998654 4455556655 4588887 67788888776543333468999999999998876432 12222
Q ss_pred hHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHH-hhhcccCCCCCCchhhh
Q 008176 422 GEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 422 ~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~-~rr~~~~IgF~~p~~e~ 494 (575)
...+.++||..|||. ....++++|++||.++ ++.++. .+||+..|.|+.|+.+.
T Consensus 314 e~~il~~LL~~LDgl-------------------~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~ 369 (512)
T TIGR03689 314 ETTVVPQLLSELDGV-------------------ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEA 369 (512)
T ss_pred HHHHHHHHHHHhccc-------------------ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHH
Confidence 244788999999851 1245688899999887 666665 35999999999999876
No 48
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.1e-16 Score=178.31 Aligned_cols=209 Identities=25% Similarity=0.330 Sum_probs=155.6
Q ss_pred CCCCCCCCCCCCCChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccE
Q 008176 254 GCWGGSNLGNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNI 333 (575)
Q Consensus 254 ~~~~~~~~~~~~~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~V 333 (575)
-+|+.. ..+....++.++.||++-.|.+++|+++.+.+.-... ... .++.+
T Consensus 302 lPW~~~--sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l-------~~~--------------------~kGpI 352 (782)
T COG0466 302 LPWGKR--SKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKL-------TKK--------------------LKGPI 352 (782)
T ss_pred CCCccc--cchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHH-------hcc--------------------CCCcE
Confidence 467653 3355678889999999999999999999998862111 000 11344
Q ss_pred E-EEcCCCCChHHHHHHHHHHhCCCEEEeccccccc--------cccccchhhhHHHHHhhhchhhHHhhccCeEeehhH
Q 008176 334 L-LMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (575)
Q Consensus 334 L-L~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~--------sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEI 404 (575)
| |+||||+|||+|++.||+.++..|+++....+.. .-|+|.-+.+.+..+-... ..+.+++||||
T Consensus 353 LcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~------~~NPv~LLDEI 426 (782)
T COG0466 353 LCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAG------VKNPVFLLDEI 426 (782)
T ss_pred EEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhC------CcCCeEEeech
Confidence 4 9999999999999999999999999998776543 2377877777666554332 35668999999
Q ss_pred hhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHhhhccc
Q 008176 405 DKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDS 483 (575)
Q Consensus 405 D~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~rr~~~ 483 (575)
|++..+- .+| =.++||++|| ||++..+.+|...+-+|-++++||||+|..+ +..++.+|..
T Consensus 427 DKm~ss~-----rGD-----PaSALLEVLD------PEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRME-- 488 (782)
T COG0466 427 DKMGSSF-----RGD-----PASALLEVLD------PEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRME-- 488 (782)
T ss_pred hhccCCC-----CCC-----hHHHHHhhcC------HhhcCchhhccccCccchhheEEEeecCccccCChHHhccee--
Confidence 9997651 222 4789999999 9999999999999999999999999999887 7777766542
Q ss_pred CCCCCCchhhhhccCCCChHHHHHHHHhhhcchhhhhcCCCC
Q 008176 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIP 525 (575)
Q Consensus 484 ~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l~~~dl~~~gl~P 525 (575)
.++..+++..+...-....+-+..+.+.|+.+
T Consensus 489 ----------iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~ 520 (782)
T COG0466 489 ----------VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKK 520 (782)
T ss_pred ----------eeeecCCChHHHHHHHHHhcchHHHHHcCCCc
Confidence 22334455555555566667776666767665
No 49
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.7e-16 Score=179.76 Aligned_cols=239 Identities=23% Similarity=0.329 Sum_probs=164.7
Q ss_pred CCCCCCCCCCCCCC----CChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCccc
Q 008176 252 KDGCWGGSNLGNKF----PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVE 327 (575)
Q Consensus 252 ~~~~~~~~~~~~~~----~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~ 327 (575)
....|.+++..... .....+++.|.+.|+||++|+..+.++|..... |...+
T Consensus 533 ~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~------------gl~~~------------ 588 (898)
T KOG1051|consen 533 VVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRA------------GLKDP------------ 588 (898)
T ss_pred hhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhc------------ccCCC------------
Confidence 35689898887654 355669999999999999999999999962221 11111
Q ss_pred ccCccEEEEcCCCCChHHHHHHHHHHh---CCCEEEecccc--------ccccccccchhhhHHHHHhhhchhhHHhhcc
Q 008176 328 LEKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT--------LTQAGYVGEDVESILYKLLTVSDYNVAAAQQ 396 (575)
Q Consensus 328 i~~~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~--------l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~ 396 (575)
-+..-++|.||.|+|||.||+++|..+ ...++++++++ -.+++|+|......+.+.+... ..
T Consensus 589 ~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~Lteavrrr-------P~ 661 (898)
T KOG1051|consen 589 NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRR-------PY 661 (898)
T ss_pred CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcC-------Cc
Confidence 123567899999999999999999988 35689999997 2347899998777777776654 45
Q ss_pred CeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHH
Q 008176 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (575)
Q Consensus 397 ~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i 476 (575)
+||+|||||++++. +++.|+++||.+ ...+.++ ..++.+|++||+|+|... +...
T Consensus 662 sVVLfdeIEkAh~~--------------v~n~llq~lD~G--------rltDs~G--r~Vd~kN~I~IMTsn~~~-~~i~ 716 (898)
T KOG1051|consen 662 SVVLFEEIEKAHPD--------------VLNILLQLLDRG--------RLTDSHG--REVDFKNAIFIMTSNVGS-SAIA 716 (898)
T ss_pred eEEEEechhhcCHH--------------HHHHHHHHHhcC--------ccccCCC--cEeeccceEEEEecccch-Hhhh
Confidence 79999999999988 999999999932 2334444 478999999999998532 1111
Q ss_pred HhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhhcchhhhh----cCCCCccccccceEEEcCCCCHHHHHHHHhhh
Q 008176 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIA----YGLIPEFVGRFPVLVSLLALTENQLVQVLTEP 552 (575)
Q Consensus 477 ~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l~~~dl~~----~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~ 552 (575)
.... ..++-.-..++. .... .......+... ..+.|||++|++.++.+..++.+++.+|+...
T Consensus 717 ~~~~---~~~~l~~~~~~~----~~~~------~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~ 783 (898)
T KOG1051|consen 717 NDAS---LEEKLLDMDEKR----GSYR------LKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQ 783 (898)
T ss_pred cccc---cccccccchhhh----hhhh------hhhhhhhhhhhcccccccChHHhcccceeeeecccchhhHhhhhhhH
Confidence 1111 111111111100 0000 01111122233 55889999999999999999999999998866
Q ss_pred HHHHHHH
Q 008176 553 KNALGKQ 559 (575)
Q Consensus 553 l~~L~k~ 559 (575)
+....+.
T Consensus 784 ~~e~~~r 790 (898)
T KOG1051|consen 784 LTEIEKR 790 (898)
T ss_pred HHHHHHH
Confidence 5555333
No 50
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.69 E-value=4.9e-16 Score=180.16 Aligned_cols=167 Identities=25% Similarity=0.335 Sum_probs=114.4
Q ss_pred CCCCCCCCCCCCCChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccE
Q 008176 254 GCWGGSNLGNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNI 333 (575)
Q Consensus 254 ~~~~~~~~~~~~~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~V 333 (575)
-+|.... .+......+++.|+++++||+++|+.+.+.+..+..+ .. ....++
T Consensus 299 ip~~~~~--~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~------~~--------------------~~~~~l 350 (775)
T TIGR00763 299 LPWGKYS--KENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLR------GK--------------------MKGPIL 350 (775)
T ss_pred CCCcccc--cchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh------cC--------------------CCCceE
Confidence 3565432 2345678889999999999999999999877522210 00 112468
Q ss_pred EEEcCCCCChHHHHHHHHHHhCCCEEEeccccccc--------cccccchhhhHHHHHhhhchhhHHhhccCeEeehhHh
Q 008176 334 LLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (575)
Q Consensus 334 LL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~--------sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID 405 (575)
+|+||||||||++|+++|+.++.+++++++..+.. ..|+|.... .+.+.+..+. ....||||||||
T Consensus 351 ll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g-~i~~~l~~~~-----~~~~villDEid 424 (775)
T TIGR00763 351 CLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPG-RIIQGLKKAK-----TKNPLFLLDEID 424 (775)
T ss_pred EEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCc-hHHHHHHHhC-----cCCCEEEEechh
Confidence 89999999999999999999999999988765321 246666533 3334444332 244599999999
Q ss_pred hhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCc
Q 008176 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (575)
Q Consensus 406 ~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~ 470 (575)
++.+.. .++ ..++|+++|| |+....+.++.....++.++++||+|+|..
T Consensus 425 k~~~~~-----~~~-----~~~aLl~~ld------~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~ 473 (775)
T TIGR00763 425 KIGSSF-----RGD-----PASALLEVLD------PEQNNAFSDHYLDVPFDLSKVIFIATANSI 473 (775)
T ss_pred hcCCcc-----CCC-----HHHHHHHhcC------HHhcCccccccCCceeccCCEEEEEecCCc
Confidence 998531 111 5688999998 223333444444456788999999999864
No 51
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.68 E-value=4.5e-16 Score=158.29 Aligned_cols=168 Identities=27% Similarity=0.471 Sum_probs=119.5
Q ss_pred hhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
.|+++ +||+++|+.|...+..... +.+++ .|+||+||||.||||||..+|++
T Consensus 24 ~l~ef-iGQ~~vk~~L~ifI~AAk~------------------r~e~l---------DHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 24 TLDEF-IGQEKVKEQLQIFIKAAKK------------------RGEAL---------DHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred cHHHh-cChHHHHHHHHHHHHHHHh------------------cCCCc---------CeEEeeCCCCCcHHHHHHHHHHH
Confidence 45554 9999999999988852222 11222 69999999999999999999999
Q ss_pred hCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHh
Q 008176 354 VNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (575)
Q Consensus 354 l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~L 433 (575)
++..+...++..+..++ +....+..+ ..+.|+|||||+++.+. +-..|..+|
T Consensus 76 mgvn~k~tsGp~leK~g----DlaaiLt~L----------e~~DVLFIDEIHrl~~~--------------vEE~LYpaM 127 (332)
T COG2255 76 LGVNLKITSGPALEKPG----DLAAILTNL----------EEGDVLFIDEIHRLSPA--------------VEEVLYPAM 127 (332)
T ss_pred hcCCeEecccccccChh----hHHHHHhcC----------CcCCeEEEehhhhcChh--------------HHHHhhhhh
Confidence 99999877777665432 222333222 35679999999999988 888999999
Q ss_pred hCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhh
Q 008176 434 EGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (575)
Q Consensus 434 Eg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l 513 (575)
|.+.+.+- ....+..+.+.++-..+.+|.+|....+
T Consensus 128 EDf~lDI~---IG~gp~Arsv~ldLppFTLIGATTr~G~----------------------------------------- 163 (332)
T COG2255 128 EDFRLDII---IGKGPAARSIRLDLPPFTLIGATTRAGM----------------------------------------- 163 (332)
T ss_pred hheeEEEE---EccCCccceEeccCCCeeEeeecccccc-----------------------------------------
Confidence 98876651 1122334456677778777877664331
Q ss_pred cchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHh
Q 008176 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLT 550 (575)
Q Consensus 514 ~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~ 550 (575)
+...+.+||..+..++.|+.+||.+|+.
T Consensus 164 ---------lt~PLrdRFGi~~rlefY~~~eL~~Iv~ 191 (332)
T COG2255 164 ---------LTNPLRDRFGIIQRLEFYTVEELEEIVK 191 (332)
T ss_pred ---------ccchhHHhcCCeeeeecCCHHHHHHHHH
Confidence 3345667777777777777777777765
No 52
>CHL00176 ftsH cell division protein; Validated
Probab=99.67 E-value=3.7e-16 Score=177.00 Aligned_cols=172 Identities=25% Similarity=0.354 Sum_probs=125.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+|.+++|+.+.+.+.. .+.. .. +..+... .+.++||+||||||||++|+++|+.++.+
T Consensus 184 dv~G~~~~k~~l~eiv~~-lk~~-~~-----------------~~~~g~~-~p~gVLL~GPpGTGKT~LAralA~e~~~p 243 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSF-LKKP-ER-----------------FTAVGAK-IPKGVLLVGPPGTGKTLLAKAIAGEAEVP 243 (638)
T ss_pred hccChHHHHHHHHHHHHH-HhCH-HH-----------------HhhccCC-CCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 489999999999988751 1110 00 0111111 13689999999999999999999999999
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCe
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~ 437 (575)
++.++++++.. .++|.. ...++.+|..+.. ..++||||||+|.+...|.....+.+...+.+++.||..|||.
T Consensus 244 ~i~is~s~f~~-~~~g~~-~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~- 316 (638)
T CHL00176 244 FFSISGSEFVE-MFVGVG-AARVRDLFKKAKE----NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGF- 316 (638)
T ss_pred eeeccHHHHHH-Hhhhhh-HHHHHHHHHHHhc----CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccc-
Confidence 99999998763 466665 4567777777642 5789999999999988775443344444556778888888852
Q ss_pred ecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHH-hhhcccCCCCCCchhhh
Q 008176 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 438 v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~-~rr~~~~IgF~~p~~e~ 494 (575)
....++++|+++|..+ ++.++. .+||+..|.++.|+.+.
T Consensus 317 ------------------~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~ 357 (638)
T CHL00176 317 ------------------KGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREG 357 (638)
T ss_pred ------------------cCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHH
Confidence 1234578888888876 566554 45899999999998765
No 53
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.66 E-value=2.3e-15 Score=174.15 Aligned_cols=216 Identities=18% Similarity=0.273 Sum_probs=150.9
Q ss_pred CCCCCCCCCCCCCChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccE
Q 008176 254 GCWGGSNLGNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNI 333 (575)
Q Consensus 254 ~~~~~~~~~~~~~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~V 333 (575)
-+|+.. ..+.....+.++.|+++..|++++|+++.+.+...... .. .....+
T Consensus 301 ~pw~~~--~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~------~~--------------------~~g~~i 352 (784)
T PRK10787 301 VPWNAR--SKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRV------NK--------------------IKGPIL 352 (784)
T ss_pred CCCCCC--CcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhc------cc--------------------CCCceE
Confidence 468653 33556788999999999999999999999888522110 00 012457
Q ss_pred EEEcCCCCChHHHHHHHHHHhCCCEEEeccccccc--------cccccchhhhHHHHHhhhchhhHHhhccCeEeehhHh
Q 008176 334 LLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (575)
Q Consensus 334 LL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~--------sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID 405 (575)
+|+||||+|||++++.+|+.++.+++++++..... ..|+|...... ...+..+. ....|++|||+|
T Consensus 353 ~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~-~~~l~~~~-----~~~~villDEid 426 (784)
T PRK10787 353 CLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKL-IQKMAKVG-----VKNPLFLLDEID 426 (784)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHH-HHHHHhcC-----CCCCEEEEEChh
Confidence 89999999999999999999999999888776432 12444432222 22222221 245699999999
Q ss_pred hhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCC
Q 008176 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (575)
Q Consensus 406 ~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~I 485 (575)
++..+.. ++ .+++|+++|| |++...+.++...+.++.++++||||+|...
T Consensus 427 k~~~~~~-----g~-----~~~aLlevld------~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~-------------- 476 (784)
T PRK10787 427 KMSSDMR-----GD-----PASALLEVLD------PEQNVAFSDHYLEVDYDLSDVMFVATSNSMN-------------- 476 (784)
T ss_pred hcccccC-----CC-----HHHHHHHHhc------cccEEEEecccccccccCCceEEEEcCCCCC--------------
Confidence 9976521 11 5799999999 4455566777777788999999999987421
Q ss_pred CCCCchhhhhccCCCChHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHh
Q 008176 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQ 565 (575)
Q Consensus 486 gF~~p~~e~~~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~~~~~~~ 565 (575)
+.|.|++|+. ++.+..|+++++.+|++..+ ..+..+...
T Consensus 477 -------------------------------------i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L---~~k~~~~~~ 515 (784)
T PRK10787 477 -------------------------------------IPAPLLDRME-VIRLSGYTEDEKLNIAKRHL---LPKQIERNA 515 (784)
T ss_pred -------------------------------------CCHHHhccee-eeecCCCCHHHHHHHHHHhh---hHHHHHHhC
Confidence 5688889995 68899999999999998544 222222224
Q ss_pred hCCCeEEeC
Q 008176 566 MNGVSASVS 574 (575)
Q Consensus 566 ~~~i~l~~~ 574 (575)
..+.+++|+
T Consensus 516 l~~~~l~i~ 524 (784)
T PRK10787 516 LKKGELTVD 524 (784)
T ss_pred CCCCeEEEC
Confidence 455566654
No 54
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.66 E-value=6.8e-16 Score=175.58 Aligned_cols=182 Identities=23% Similarity=0.323 Sum_probs=133.4
Q ss_pred ChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHH
Q 008176 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLL 346 (575)
Q Consensus 267 t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtL 346 (575)
++..+...+++ +.|.+.+++.+.+.+.. .+. ..... .....+ +.+++|+||||||||++
T Consensus 143 ~~~~~~~~~~d-i~g~~~~~~~l~~i~~~-~~~-~~~~~-----------------~~~~~~-~~gill~G~~G~GKt~~ 201 (644)
T PRK10733 143 TEDQIKTTFAD-VAGCDEAKEEVAELVEY-LRE-PSRFQ-----------------KLGGKI-PKGVLMVGPPGTGKTLL 201 (644)
T ss_pred CchhhhCcHHH-HcCHHHHHHHHHHHHHH-hhC-HHHHH-----------------hcCCCC-CCcEEEECCCCCCHHHH
Confidence 33455566665 79999999999988852 111 00000 011112 25699999999999999
Q ss_pred HHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHH
Q 008176 347 AKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (575)
Q Consensus 347 AraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq 426 (575)
|+++|+.++.+|+.++++++. ..++|.. ...++..|..+. ...|+||||||+|.+...|.....+.+...+.+.
T Consensus 202 ~~~~a~~~~~~f~~is~~~~~-~~~~g~~-~~~~~~~f~~a~----~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~l 275 (644)
T PRK10733 202 AKAIAGEAKVPFFTISGSDFV-EMFVGVG-ASRVRDMFEQAK----KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTL 275 (644)
T ss_pred HHHHHHHcCCCEEEEehHHhH-Hhhhccc-HHHHHHHHHHHH----hcCCcEEEehhHhhhhhccCCCCCCCchHHHHHH
Confidence 999999999999999998877 3477776 566777777654 2578999999999999887654444555566788
Q ss_pred HHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHh-hhcccCCCCCCchhhh
Q 008176 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (575)
Q Consensus 427 ~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~-rr~~~~IgF~~p~~e~ 494 (575)
+.||..|||. .....+++|+++|.++ ++.++.+ .||++.|.++.|+.+.
T Consensus 276 n~lL~~mdg~-------------------~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~ 326 (644)
T PRK10733 276 NQMLVEMDGF-------------------EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 326 (644)
T ss_pred HHHHHhhhcc-------------------cCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHH
Confidence 9999999952 1234588899999887 6666654 5999999999998765
No 55
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.65 E-value=6.1e-16 Score=164.49 Aligned_cols=168 Identities=27% Similarity=0.406 Sum_probs=116.8
Q ss_pred cccChHHHHHHHHHHHHhhhhh--HhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r--~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
+|.|.+++++.|.+++..+..+ .+.. +.+. ++.++||+||||||||++|+++|+.++
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~--------------------~g~~-~p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEE--------------------VGIE-PPKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHh--------------------cCCC-CCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 4899999999999998633221 1111 1111 236799999999999999999999999
Q ss_pred CCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHh--
Q 008176 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML-- 433 (575)
Q Consensus 356 ~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~L-- 433 (575)
.+++.+.+.++. ..|+|+. ...++..|..+.. ..++||||||+|.+...+.....+.+.. ++..+.+++
T Consensus 182 ~~~~~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~----~~p~il~iDEiD~l~~~~~~~~~~~~~~---~~~~l~~ll~~ 252 (364)
T TIGR01242 182 ATFIRVVGSELV-RKYIGEG-ARLVREIFELAKE----KAPSIIFIDEIDAIAAKRTDSGTSGDRE---VQRTLMQLLAE 252 (364)
T ss_pred CCEEecchHHHH-HHhhhHH-HHHHHHHHHHHHh----cCCcEEEhhhhhhhccccccCCCCccHH---HHHHHHHHHHH
Confidence 999999887766 3477775 5566677665432 4678999999999987655433333322 444454444
Q ss_pred -hCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHH-hhhcccCCCCCCchhhh
Q 008176 434 -EGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 434 -Eg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~-~rr~~~~IgF~~p~~e~ 494 (575)
++. -...++.+|+|+|..+ ++.++. ..+++..|.|+.|+.+.
T Consensus 253 ld~~-------------------~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~ 297 (364)
T TIGR01242 253 LDGF-------------------DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEG 297 (364)
T ss_pred hhCC-------------------CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHH
Confidence 421 1234678888888776 555554 35888999999998765
No 56
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=8e-16 Score=165.26 Aligned_cols=169 Identities=26% Similarity=0.380 Sum_probs=135.9
Q ss_pred ccccChHHHHHHHHHHHHhhhhh--HhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 277 KFVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 277 ~~VvGqd~ak~~L~~al~~~~~r--~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
+++.|++.+|+.+.+++.....| ++.+.+. +.+.+||.||||+|||+|++|||.++
T Consensus 153 ~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~----------------------p~rglLLfGPpgtGKtmL~~aiAsE~ 210 (428)
T KOG0740|consen 153 DDIAGLEDAKQSLKEAVILPLLRPDLFLGLRE----------------------PVRGLLLFGPPGTGKTMLAKAIATES 210 (428)
T ss_pred cCCcchhhHHHHhhhhhhhcccchHhhhcccc----------------------ccchhheecCCCCchHHHHHHHHhhh
Confidence 36899999999999999744432 3333332 23689999999999999999999999
Q ss_pred CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 355 ~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
+..|+.+.+++++ +.|+|+. +..++.+|..|+. ..++|+||||||++..+|. ...+.+.++.+..+|-.++
T Consensus 211 ~atff~iSassLt-sK~~Ge~-eK~vralf~vAr~----~qPsvifidEidslls~Rs---~~e~e~srr~ktefLiq~~ 281 (428)
T KOG0740|consen 211 GATFFNISASSLT-SKYVGES-EKLVRALFKVARS----LQPSVIFIDEIDSLLSKRS---DNEHESSRRLKTEFLLQFD 281 (428)
T ss_pred cceEeeccHHHhh-hhccChH-HHHHHHHHHHHHh----cCCeEEEechhHHHHhhcC---CcccccchhhhhHHHhhhc
Confidence 9999999999999 6799998 8999999998874 5899999999999999873 3445555567777777777
Q ss_pred CCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHhhhcccCCCCCCchhhh
Q 008176 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 435 g~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~rr~~~~IgF~~p~~e~ 494 (575)
+... ....++++|+|+|.+. +|+++++ ||.+.+.++.|+.+.
T Consensus 282 ~~~s-----------------~~~drvlvigaTN~P~e~Dea~~R-rf~kr~yiplPd~et 324 (428)
T KOG0740|consen 282 GKNS-----------------APDDRVLVIGATNRPWELDEAARR-RFVKRLYIPLPDYET 324 (428)
T ss_pred cccC-----------------CCCCeEEEEecCCCchHHHHHHHH-HhhceeeecCCCHHH
Confidence 5321 1223789999999987 8888876 888888899998875
No 57
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.8e-15 Score=155.33 Aligned_cols=173 Identities=23% Similarity=0.307 Sum_probs=130.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
.|-|.-..++++.+.|..|... ++....+++.++ ..++|+||||+|||.+|+++|..++..
T Consensus 133 ~~ggl~~qirelre~ielpl~n------------------p~lf~rvgIk~P-kg~ll~GppGtGKTlla~~Vaa~mg~n 193 (388)
T KOG0651|consen 133 NVGGLFYQIRELREVIELPLTN------------------PELFLRVGIKPP-KGLLLYGPPGTGKTLLARAVAATMGVN 193 (388)
T ss_pred HhCChHHHHHHHHhheEeeccC------------------chhccccCCCCC-ceeEEeCCCCCchhHHHHHHHHhcCCc
Confidence 4788889999999988755542 222223334443 578899999999999999999999999
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCe
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~ 437 (575)
|+.+..+++. .+|+|+. .+.+++.|..|+. ..+||||+||||++...|.....+ ..+.+|.+|.+++++..
T Consensus 194 fl~v~ss~lv-~kyiGEs-aRlIRemf~yA~~----~~pciifmdeiDAigGRr~se~Ts---~dreiqrTLMeLlnqmd 264 (388)
T KOG0651|consen 194 FLKVVSSALV-DKYIGES-ARLIRDMFRYARE----VIPCIIFMDEIDAIGGRRFSEGTS---SDREIQRTLMELLNQMD 264 (388)
T ss_pred eEEeeHhhhh-hhhcccH-HHHHHHHHHHHhh----hCceEEeehhhhhhccEEeccccc---hhHHHHHHHHHHHHhhc
Confidence 9999999988 6899997 8999999988764 467999999999999887543333 33457777777766310
Q ss_pred ecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHH-HHHhhhcccCCCCCCchhhh
Q 008176 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEK-TISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 438 v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~-~i~~rr~~~~IgF~~p~~e~ 494 (575)
| .+ ....+-+|+|||.++ |+. +++++|.++.+.-+.|+...
T Consensus 265 ------g------fd----~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~ 307 (388)
T KOG0651|consen 265 ------G------FD----TLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQA 307 (388)
T ss_pred ------c------ch----hcccccEEEecCCccccchhhcCCccccceeccCCcchhh
Confidence 0 00 123477789999888 554 56788999999999987753
No 58
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.60 E-value=4.4e-15 Score=156.99 Aligned_cols=82 Identities=30% Similarity=0.460 Sum_probs=68.8
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~ 410 (575)
.+++|||||||||||+|++||+..+.+|..+++..-. .+.+++.++.++......++.|||||||+++.+.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~g---------vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSG---------VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccccc---------HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence 6889999999999999999999999999988875421 3556777777765444466889999999999987
Q ss_pred hhhcccCCCcchHHHHHHHHHHhhC
Q 008176 411 AESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 411 r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.|+.||..||.
T Consensus 120 --------------QQD~lLp~vE~ 130 (436)
T COG2256 120 --------------QQDALLPHVEN 130 (436)
T ss_pred --------------hhhhhhhhhcC
Confidence 89999999993
No 59
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.56 E-value=1.6e-14 Score=151.68 Aligned_cols=176 Identities=27% Similarity=0.336 Sum_probs=120.7
Q ss_pred ChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHH
Q 008176 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLL 346 (575)
Q Consensus 267 t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtL 346 (575)
....+...+.+.++|+++++..+..++. ..+|+||.||||||||++
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~----------------------------------~~~~vll~G~PG~gKT~l 59 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALL----------------------------------AGGHVLLEGPPGVGKTLL 59 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHH----------------------------------cCCCEEEECCCCccHHHH
Confidence 4455677788889999999998887774 237999999999999999
Q ss_pred HHHHHHHhCCCEEEecccc-ccccccccchhhhHH---HHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcch
Q 008176 347 AKTLARYVNVPFVIADATT-LTQAGYVGEDVESIL---YKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (575)
Q Consensus 347 AraLA~~l~~~fv~v~~s~-l~~sg~vGe~~~~~l---~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~ 422 (575)
|+.+|+.++.+|++++|+. +.+.+.+|....... ...+.--...+..+..+|+|+|||++..++
T Consensus 60 a~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~------------ 127 (329)
T COG0714 60 ARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE------------ 127 (329)
T ss_pred HHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHH------------
Confidence 9999999999999999996 665666676432222 111111111122222269999999999988
Q ss_pred HHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhh-cccCCCCCCchhh
Q 008176 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR-QDSSIGFGAPVRA 493 (575)
Q Consensus 423 e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr-~~~~IgF~~p~~e 493 (575)
+|++||++|+++.+.+++... ...+...+++.|.|..-...+ ..+.+++.+|. +...++|+.+..+
T Consensus 128 --~q~aLl~~l~e~~vtv~~~~~-~~~~~~f~viaT~Np~e~~g~--~~l~eA~ldRf~~~~~v~yp~~~~e 194 (329)
T COG0714 128 --VQNALLEALEERQVTVPGLTT-IRLPPPFIVIATQNPGEYEGT--YPLPEALLDRFLLRIYVDYPDSEEE 194 (329)
T ss_pred --HHHHHHHHHhCcEEEECCcCC-cCCCCCCEEEEccCccccCCC--cCCCHHHHhhEEEEEecCCCCchHH
Confidence 999999999999998866552 323333334444442222211 12556666665 8889999855543
No 60
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.55 E-value=1.2e-14 Score=129.75 Aligned_cols=129 Identities=29% Similarity=0.524 Sum_probs=94.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhh-ccCeEeehhHhhhhHhh
Q 008176 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAA-QQGIVYIDEVDKITKKA 411 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~-~~~ILfIDEID~l~~~r 411 (575)
+||+||||||||++|+.+|+.++.+++.+++.++. ..+.++. .+.+...+..+.. . .++||||||+|.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~-~~~~~~~-~~~i~~~~~~~~~----~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI-SSYAGDS-EQKIRDFFKKAKK----SAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH-TSSTTHH-HHHHHHHHHHHHH----TSTSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc-ccccccc-ccccccccccccc----cccceeeeeccchhccccc
Confidence 68999999999999999999999999999999987 3455655 6677777776542 2 37999999999999874
Q ss_pred hhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHhhhcccCCCCC
Q 008176 412 ESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFG 488 (575)
Q Consensus 412 ~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~rr~~~~IgF~ 488 (575)
+.........+++.|+..|+... -...++++|+++|..+ +++.+.++||+..+.++
T Consensus 75 ---~~~~~~~~~~~~~~L~~~l~~~~------------------~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 75 ---QPSSSSFEQRLLNQLLSLLDNPS------------------SKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp ---STSSSHHHHHHHHHHHHHHHTTT------------------TTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-
T ss_pred ---ccccccccccccceeeecccccc------------------cccccceeEEeeCChhhCCHhHHhCCCcEEEEcC
Confidence 12233334458899999999310 0134588899888765 55555436777766654
No 61
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.55 E-value=1.4e-14 Score=174.34 Aligned_cols=136 Identities=17% Similarity=0.273 Sum_probs=100.4
Q ss_pred cCccEEEEcCCCCChHHHHHHHHHHhCCCEEEecccccccccc-------------------------------------
Q 008176 329 EKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGY------------------------------------- 371 (575)
Q Consensus 329 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~------------------------------------- 371 (575)
++++|||+||||||||.||||+|..+++||+.++++++... +
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~-~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDN-KPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhc-ccccccccccccccccccccccccccccchhhhhhcch
Confidence 35799999999999999999999999999999999987632 1
Q ss_pred ----ccchh-hhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcc
Q 008176 372 ----VGEDV-ESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGAR 446 (575)
Q Consensus 372 ----vGe~~-~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~ 446 (575)
+++++ ...++.+|+.|+ +..||||||||||++..+. +.+...+.|+..|+|...
T Consensus 1708 ~~~~m~~~e~~~rIr~lFelAR----k~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~~-------- 1766 (2281)
T CHL00206 1708 LTMDMMPKIDRFYITLQFELAK----AMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDCE-------- 1766 (2281)
T ss_pred hhhhhhhhhhHHHHHHHHHHHH----HCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhccccc--------
Confidence 11111 112566777665 3689999999999998651 112247889999985210
Q ss_pred cCCCCCcceecCCCEEEEecCCCcC-hHHHHH-hhhcccCCCCCCchhhh
Q 008176 447 KHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 447 ~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~-~rr~~~~IgF~~p~~e~ 494 (575)
...+.++++|+|||.++ +|.++. .+|||+.|.++.|+...
T Consensus 1767 --------~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~ 1808 (2281)
T CHL00206 1767 --------RCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQ 1808 (2281)
T ss_pred --------cCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchh
Confidence 01356789999999998 666554 46999999998887643
No 62
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1e-14 Score=169.13 Aligned_cols=173 Identities=24% Similarity=0.353 Sum_probs=131.1
Q ss_pred hhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
.+++ |.|.+.++..|.+.|..+|.. ++.++..++.. +++|||+||||||||++|+++|..
T Consensus 263 ~fd~-vggl~~~i~~LKEmVl~PLly------------------PE~f~~~~itp-PrgvL~~GppGTGkTl~araLa~~ 322 (1080)
T KOG0732|consen 263 GFDS-VGGLENYINQLKEMVLLPLLY------------------PEFFDNFNITP-PRGVLFHGPPGTGKTLMARALAAA 322 (1080)
T ss_pred Cccc-cccHHHHHHHHHHHHHhHhhh------------------hhHhhhcccCC-CcceeecCCCCCchhHHHHhhhhh
Confidence 3444 899999999999999755442 22333333333 368999999999999999999988
Q ss_pred hC-----CCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHH
Q 008176 354 VN-----VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428 (575)
Q Consensus 354 l~-----~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~a 428 (575)
+. ..|+.-.+.+.. +.|+|+. ++.++-+|+.|.- ..+.|+|+||||.+++.|..... ..+..+..+
T Consensus 323 ~s~~~~kisffmrkgaD~l-skwvgEa-ERqlrllFeeA~k----~qPSIIffdeIdGlapvrSskqE---qih~SIvST 393 (1080)
T KOG0732|consen 323 CSRGNRKISFFMRKGADCL-SKWVGEA-ERQLRLLFEEAQK----TQPSIIFFDEIDGLAPVRSSKQE---QIHASIVST 393 (1080)
T ss_pred hcccccccchhhhcCchhh-ccccCcH-HHHHHHHHHHHhc----cCceEEeccccccccccccchHH---HhhhhHHHH
Confidence 72 345556666655 6799997 8899999998863 68999999999999998754432 333348999
Q ss_pred HHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHH-hhhcccCCCCCCchhhh
Q 008176 429 LLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 429 LL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~-~rr~~~~IgF~~p~~e~ 494 (575)
||.+|+|- -....+++|.+||.++ ++.+++ .++|++.+.|++|+.+.
T Consensus 394 LLaLmdGl-------------------dsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~a 442 (1080)
T KOG0732|consen 394 LLALMDGL-------------------DSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDA 442 (1080)
T ss_pred HHHhccCC-------------------CCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHH
Confidence 99999972 1234588899999988 666554 44899999999998764
No 63
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=7.7e-15 Score=158.62 Aligned_cols=142 Identities=27% Similarity=0.414 Sum_probs=113.8
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCC-CEEEeccccccccccccchhhhHHHHHhhhchhhHHh----hccCeEeehhHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNV-PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAA----AQQGIVYIDEVD 405 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~-~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~----~~~~ILfIDEID 405 (575)
.++||+||||||||.+||.|.+.++. +--.+++.++. ..|||++ +..++++|..|+.+... ..-.||++||||
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL-~KYVGeS-E~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiD 334 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEIL-NKYVGES-EENVRKLFADAEEEQRRLGANSGLHIIIFDEID 334 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHH-HHhhccc-HHHHHHHHHhHHHHHHhhCccCCceEEEehhhH
Confidence 58999999999999999999999965 33458888877 5799998 88899999988754321 223589999999
Q ss_pred hhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcCh-HH-HHHhhhccc
Q 008176 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EK-TISERRQDS 483 (575)
Q Consensus 406 ~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL-~~-~i~~rr~~~ 483 (575)
+++++|.+...+...+.. +.|+||.-||| +-...||++|.-||..|| |+ +++.+|+..
T Consensus 335 AICKqRGS~~g~TGVhD~-VVNQLLsKmDG-------------------VeqLNNILVIGMTNR~DlIDEALLRPGRlEV 394 (744)
T KOG0741|consen 335 AICKQRGSMAGSTGVHDT-VVNQLLSKMDG-------------------VEQLNNILVIGMTNRKDLIDEALLRPGRLEV 394 (744)
T ss_pred HHHHhcCCCCCCCCccHH-HHHHHHHhccc-------------------HHhhhcEEEEeccCchhhHHHHhcCCCceEE
Confidence 999999877655555544 99999999997 234578999999999994 44 456678888
Q ss_pred CCCCCCchhhh
Q 008176 484 SIGFGAPVRAN 494 (575)
Q Consensus 484 ~IgF~~p~~e~ 494 (575)
.++..+|+++.
T Consensus 395 qmEIsLPDE~g 405 (744)
T KOG0741|consen 395 QMEISLPDEKG 405 (744)
T ss_pred EEEEeCCCccC
Confidence 88999998763
No 64
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.54 E-value=4.8e-14 Score=162.76 Aligned_cols=171 Identities=25% Similarity=0.408 Sum_probs=123.6
Q ss_pred hhcccccChHHHHHHHHHHHHhhhh--hHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLA 351 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA 351 (575)
.+++ |+|++++++.+.+.+..... .++... .+. ++.++||+||||||||++|+++|
T Consensus 176 ~~~d-i~G~~~~~~~l~~~i~~~~~~~~~~~~~--------------------gi~-~~~giLL~GppGtGKT~laraia 233 (733)
T TIGR01243 176 TYED-IGGLKEAKEKIREMVELPMKHPELFEHL--------------------GIE-PPKGVLLYGPPGTGKTLLAKAVA 233 (733)
T ss_pred CHHH-hcCHHHHHHHHHHHHHHHhhCHHHHHhc--------------------CCC-CCceEEEECCCCCChHHHHHHHH
Confidence 3444 79999999999999863322 111111 111 23689999999999999999999
Q ss_pred HHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHH
Q 008176 352 RYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (575)
Q Consensus 352 ~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~ 431 (575)
+.++.+++.+++.++. ..+.|+. ...++.+|..+. ...++||||||+|.+..+++.. ......++++.|+.
T Consensus 234 ~~~~~~~i~i~~~~i~-~~~~g~~-~~~l~~lf~~a~----~~~p~il~iDEid~l~~~r~~~---~~~~~~~~~~~Ll~ 304 (733)
T TIGR01243 234 NEAGAYFISINGPEIM-SKYYGES-EERLREIFKEAE----ENAPSIIFIDEIDAIAPKREEV---TGEVEKRVVAQLLT 304 (733)
T ss_pred HHhCCeEEEEecHHHh-cccccHH-HHHHHHHHHHHH----hcCCcEEEeehhhhhcccccCC---cchHHHHHHHHHHH
Confidence 9999999999998876 4578876 667788887654 2467999999999998875432 11223458999999
Q ss_pred HhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHh-hhcccCCCCCCchhhh
Q 008176 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (575)
Q Consensus 432 ~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~-rr~~~~IgF~~p~~e~ 494 (575)
+|++. .....+++|+++|..+ ++.++++ .||+..+.++.|+.+.
T Consensus 305 ~ld~l-------------------~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~ 350 (733)
T TIGR01243 305 LMDGL-------------------KGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRA 350 (733)
T ss_pred Hhhcc-------------------ccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHH
Confidence 99841 1123467787777665 6666544 4888999999987664
No 65
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.6e-13 Score=139.08 Aligned_cols=129 Identities=26% Similarity=0.373 Sum_probs=99.4
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHhC---------CCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccC--e
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYVN---------VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQG--I 398 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l~---------~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~--I 398 (575)
.+-+||+||||||||+|+|++|+.+. ..++++++..+- ++|.+++ .+.+.++|..-...+ ..+++ .
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLF-SKWFsES-gKlV~kmF~kI~ELv-~d~~~lVf 253 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLF-SKWFSES-GKLVAKMFQKIQELV-EDRGNLVF 253 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHH-HHHHhhh-hhHHHHHHHHHHHHH-hCCCcEEE
Confidence 35678999999999999999998872 457889988877 6799998 888888888755332 23444 3
Q ss_pred EeehhHhhhhHhhhhcccCCCcch-HHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHH
Q 008176 399 VYIDEVDKITKKAESLNISRDVSG-EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTI 476 (575)
Q Consensus 399 LfIDEID~l~~~r~~~~~~~~~~~-e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i 476 (575)
|+|||++.+...|+....+++.+. -++.|+||..||. .-...|++++||+|..+ +|.+.
T Consensus 254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDr-------------------lK~~~NvliL~TSNl~~siD~Af 314 (423)
T KOG0744|consen 254 VLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDR-------------------LKRYPNVLILATSNLTDSIDVAF 314 (423)
T ss_pred EEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH-------------------hccCCCEEEEeccchHHHHHHHh
Confidence 468999999999987766555443 4699999999992 22467899999999876 77777
Q ss_pred Hhhh
Q 008176 477 SERR 480 (575)
Q Consensus 477 ~~rr 480 (575)
-+|.
T Consensus 315 VDRA 318 (423)
T KOG0744|consen 315 VDRA 318 (423)
T ss_pred hhHh
Confidence 6654
No 66
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.47 E-value=2.6e-13 Score=130.12 Aligned_cols=145 Identities=23% Similarity=0.352 Sum_probs=96.4
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---C
Q 008176 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (575)
Q Consensus 279 VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l---~ 355 (575)
+||.+.+++.+.+.+.. +...+.+|||+|++||||+.+|++|.+.. +
T Consensus 1 liG~s~~m~~~~~~~~~------------------------------~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~ 50 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKR------------------------------AASSDLPVLITGETGTGKELLARAIHNNSPRKN 50 (168)
T ss_dssp SS--SHHHHHHHHHHHH------------------------------HTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTT
T ss_pred CEeCCHHHHHHHHHHHH------------------------------HhCCCCCEEEEcCCCCcHHHHHHHHHHhhhccc
Confidence 58889999888887741 11123689999999999999999999865 5
Q ss_pred CCEEEeccccccccccccchhhhHHHHHhhh-----------chhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHH
Q 008176 356 VPFVIADATTLTQAGYVGEDVESILYKLLTV-----------SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (575)
Q Consensus 356 ~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~-----------a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~ 424 (575)
.||+.++|+.+.+. ..-.++|.. ....+..+.+|+||||||+.+++.
T Consensus 51 ~pfi~vnc~~~~~~--------~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~-------------- 108 (168)
T PF00158_consen 51 GPFISVNCAALPEE--------LLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPE-------------- 108 (168)
T ss_dssp S-EEEEETTTS-HH--------HHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HH--------------
T ss_pred CCeEEEehhhhhcc--------hhhhhhhccccccccccccccCCceeeccceEEeecchhhhHHH--------------
Confidence 79999999887531 112223321 123456788999999999999998
Q ss_pred HHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCC
Q 008176 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (575)
Q Consensus 425 vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~Ig 486 (575)
+|..|+++|+...+.- .+... ....++.+|++++ .++++.+..++|+..+.
T Consensus 109 ~Q~~Ll~~l~~~~~~~-------~g~~~---~~~~~~RiI~st~-~~l~~~v~~g~fr~dLy 159 (168)
T PF00158_consen 109 LQAKLLRVLEEGKFTR-------LGSDK---PVPVDVRIIASTS-KDLEELVEQGRFREDLY 159 (168)
T ss_dssp HHHHHHHHHHHSEEEC-------CTSSS---EEE--EEEEEEES-S-HHHHHHTTSS-HHHH
T ss_pred HHHHHHHHHhhchhcc-------ccccc---cccccceEEeecC-cCHHHHHHcCCChHHHH
Confidence 9999999999543321 11111 1234689999988 58999998887754443
No 67
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.46 E-value=1.4e-13 Score=148.97 Aligned_cols=158 Identities=21% Similarity=0.392 Sum_probs=124.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
.+||++.++..+.+.|. -+......|||.|++||||..+||+|.+..
T Consensus 224 ~iIG~S~am~~ll~~i~------------------------------~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~ 273 (550)
T COG3604 224 GIIGRSPAMRQLLKEIE------------------------------VVAKSDSTVLIRGETGTGKELVARAIHQLSPRR 273 (550)
T ss_pred cceecCHHHHHHHHHHH------------------------------HHhcCCCeEEEecCCCccHHHHHHHHHhhCccc
Confidence 58999999999998885 111234689999999999999999999877
Q ss_pred CCCEEEeccccccc----cccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHH
Q 008176 355 NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (575)
Q Consensus 355 ~~~fv~v~~s~l~~----sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL 430 (575)
+.||+.+||..+-+ +.+.|+. ...++..+......++.+++|.||||||..++.+ +|..||
T Consensus 274 ~kPfV~~NCAAlPesLlESELFGHe-KGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~--------------lQaKLL 338 (550)
T COG3604 274 DKPFVKLNCAALPESLLESELFGHE-KGAFTGAINTRRGRFELADGGTLFLDEIGELPLA--------------LQAKLL 338 (550)
T ss_pred CCCceeeeccccchHHHHHHHhccc-ccccccchhccCcceeecCCCeEechhhccCCHH--------------HHHHHH
Confidence 68999999998543 5566664 5555666555556677789999999999999988 999999
Q ss_pred HHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCch
Q 008176 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPV 491 (575)
Q Consensus 431 ~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~ 491 (575)
++++++.+. +.+..+.+.+| +.+|++|| .|+++++++++|+..+.|...+
T Consensus 339 RvLQegEie-------RvG~~r~ikVD---VRiIAATN-RDL~~~V~~G~FRaDLYyRLsV 388 (550)
T COG3604 339 RVLQEGEIE-------RVGGDRTIKVD---VRVIAATN-RDLEEMVRDGEFRADLYYRLSV 388 (550)
T ss_pred HHHhhccee-------ecCCCceeEEE---EEEEeccc-hhHHHHHHcCcchhhhhhcccc
Confidence 999955442 33444455565 89999999 5899999999999888876543
No 68
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.45 E-value=1.2e-14 Score=133.29 Aligned_cols=112 Identities=28% Similarity=0.309 Sum_probs=69.5
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEeccc-cccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHh
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADAT-TLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s-~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~ 410 (575)
||||+|+||+|||++|+++|+.++..|.+++++ ++..+++.|..+...-...|.-.... .-..|+++|||++..++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GP---if~~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGP---IFTNILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-T---T-SSEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecCh---hhhceeeecccccCCHH
Confidence 789999999999999999999999999999997 47767777765332212222222111 23469999999999998
Q ss_pred hhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCc
Q 008176 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (575)
Q Consensus 411 r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~ 470 (575)
+|++||++|+++.|.+ .|..+.. .+...+|+|.|..
T Consensus 78 --------------tQsAlLeam~Er~Vt~--~g~~~~l--------p~pf~ViATqNp~ 113 (131)
T PF07726_consen 78 --------------TQSALLEAMEERQVTI--DGQTYPL--------PDPFFVIATQNPV 113 (131)
T ss_dssp --------------HHHHHHHHHHHSEEEE--TTEEEE----------SS-EEEEEE-TT
T ss_pred --------------HHHHHHHHHHcCeEEe--CCEEEEC--------CCcEEEEEecCcc
Confidence 9999999999988876 3333322 2336667777653
No 69
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.8e-13 Score=150.20 Aligned_cols=170 Identities=24% Similarity=0.337 Sum_probs=129.0
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCC
Q 008176 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (575)
Q Consensus 277 ~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~ 356 (575)
..+.|.......+.+.+...... +...+.+++.. +.++|++||||||||.+++++|++.+.
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~------------------~~~~~s~g~~~-prg~Ll~gppg~Gkt~l~~aVa~e~~a 244 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRH------------------PALFKSIGIKP-PRGLLLYGPPGTGKTFLVRAVANEYGA 244 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcc------------------hhhhhhcCCCC-CCCccccCCCCCChHHHHHHHHHHhCc
Confidence 35788999999999988733221 11111222222 378999999999999999999999999
Q ss_pred CEEEeccccccccccccchhhhHHHHHhhhchhhHHhhc-cCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQ-QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 357 ~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~-~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.++.+++.++. .++.|+. +..+++.|+.+.. .+ |.|+||||+|.+.++|..... .. .++..+|+.+|||
T Consensus 245 ~~~~i~~peli-~k~~gEt-e~~LR~~f~~a~k----~~~psii~IdEld~l~p~r~~~~~---~e-~Rv~sqlltL~dg 314 (693)
T KOG0730|consen 245 FLFLINGPELI-SKFPGET-ESNLRKAFAEALK----FQVPSIIFIDELDALCPKREGADD---VE-SRVVSQLLTLLDG 314 (693)
T ss_pred eeEecccHHHH-Hhcccch-HHHHHHHHHHHhc----cCCCeeEeHHhHhhhCCcccccch---HH-HHHHHHHHHHHhh
Confidence 99999999988 5688887 8889999998763 34 899999999999998764322 23 3489999999995
Q ss_pred CeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHhhhcccCCCCCCchhhh
Q 008176 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 436 ~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~rr~~~~IgF~~p~~e~ 494 (575)
- -...++++|+++|.++ ++..++++||++.+..+-|+...
T Consensus 315 ~-------------------~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~ 355 (693)
T KOG0730|consen 315 L-------------------KPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDG 355 (693)
T ss_pred C-------------------cCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchh
Confidence 1 0234567777777776 88888777999998888887543
No 70
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.44 E-value=2e-12 Score=133.38 Aligned_cols=107 Identities=29% Similarity=0.447 Sum_probs=73.9
Q ss_pred hcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 275 Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
|++ ++||+++++.|..++..... .. -...+++|+||||||||++|+++|+.+
T Consensus 3 ~~~-~iG~~~~~~~l~~~l~~~~~-----~~----------------------~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 3 LAE-FIGQEKVKEQLQLFIEAAKM-----RQ----------------------EALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred HHH-HcCHHHHHHHHHHHHHHHHh-----cC----------------------CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 444 79999999999887741111 00 012579999999999999999999999
Q ss_pred CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 355 ~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
+.++..+.++..... ..+...+.. ...+.+|||||++.+.+. .++.|+.+|+
T Consensus 55 ~~~~~~~~~~~~~~~--------~~l~~~l~~------~~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~ 106 (305)
T TIGR00635 55 GVNLKITSGPALEKP--------GDLAAILTN------LEEGDVLFIDEIHRLSPA--------------VEELLYPAME 106 (305)
T ss_pred CCCEEEeccchhcCc--------hhHHHHHHh------cccCCEEEEehHhhhCHH--------------HHHHhhHHHh
Confidence 888766655433211 111111111 135679999999999876 6788899998
Q ss_pred CCe
Q 008176 435 GTV 437 (575)
Q Consensus 435 g~~ 437 (575)
+..
T Consensus 107 ~~~ 109 (305)
T TIGR00635 107 DFR 109 (305)
T ss_pred hhh
Confidence 543
No 71
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.44 E-value=1.2e-12 Score=133.64 Aligned_cols=144 Identities=19% Similarity=0.266 Sum_probs=94.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEecccc-ccccccccchh----hhHHHHH--------------hhhchhhH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT-LTQAGYVGEDV----ESILYKL--------------LTVSDYNV 391 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~-l~~sg~vGe~~----~~~l~~l--------------f~~a~~~l 391 (575)
.++||+||||||||++|+++|+.++.+++.++|.. +....++|... ...+... +.......
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 68999999999999999999999999999999876 22233443311 1111110 00111111
Q ss_pred HhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCc-
Q 008176 392 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV- 470 (575)
Q Consensus 392 ~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~- 470 (575)
+...+++|+||||+++.++ +|+.|+.+||++.+.+|+.+.. ..++....++.+|+|+|..
T Consensus 102 A~~~g~~lllDEi~r~~~~--------------~q~~Ll~~Le~~~~~i~~~~~~-----~~~i~~~~~frvIaTsN~~~ 162 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKPE--------------TNNVLLSVFEEGVLELPGKRGT-----SRYVDVHPEFRVIFTSNPVE 162 (262)
T ss_pred HHHcCCEEEEcchhhCCHH--------------HHHHHHHHhcCCeEEccCCCCC-----CceEecCCCCEEEEeeCCcc
Confidence 2356789999999999887 9999999999888888754321 1122234567778888864
Q ss_pred -----ChHHHHHhhhcccCCCCCCchhh
Q 008176 471 -----DIEKTISERRQDSSIGFGAPVRA 493 (575)
Q Consensus 471 -----dL~~~i~~rr~~~~IgF~~p~~e 493 (575)
++.+++.+|.....+.|+..+.+
T Consensus 163 ~~g~~~l~~aL~~R~~~i~i~~P~~~~e 190 (262)
T TIGR02640 163 YAGVHETQDALLDRLITIFMDYPDIDTE 190 (262)
T ss_pred ccceecccHHHHhhcEEEECCCCCHHHH
Confidence 24566777765566666554443
No 72
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.44 E-value=5.3e-13 Score=154.14 Aligned_cols=118 Identities=25% Similarity=0.342 Sum_probs=86.5
Q ss_pred hhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
.++ .|+|+++.++.+.+.+... .+.+++|+||||||||++|+++|+.
T Consensus 180 ~l~-~~igr~~ei~~~~~~L~~~--------------------------------~~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 180 KID-PLIGREDELERTIQVLCRR--------------------------------KKNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CCC-cccCcHHHHHHHHHHHhcC--------------------------------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 445 4899999999888777411 1268999999999999999999987
Q ss_pred h----------CCCEEEeccccccc-cccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcch
Q 008176 354 V----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (575)
Q Consensus 354 l----------~~~fv~v~~s~l~~-sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~ 422 (575)
+ +..++.++++.+.. ..|.|+. +..+++.++.+.. ..++||||||+|.+....... + +.
T Consensus 227 ~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~-e~~l~~i~~~~~~----~~~~ILfiDEih~l~~~g~~~--~---~~ 296 (731)
T TIGR02639 227 IAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDF-EERLKAVVSEIEK----EPNAILFIDEIHTIVGAGATS--G---GS 296 (731)
T ss_pred HHhCCCchhhcCCeEEEecHHHHhhhccccchH-HHHHHHHHHHHhc----cCCeEEEEecHHHHhccCCCC--C---cc
Confidence 7 66788888877653 4577874 7788888876532 357899999999998653211 1 11
Q ss_pred HHHHHHHHHHhh
Q 008176 423 EGVQQALLKMLE 434 (575)
Q Consensus 423 e~vq~aLL~~LE 434 (575)
..+++.|+..|+
T Consensus 297 ~~~~~~L~~~l~ 308 (731)
T TIGR02639 297 MDASNLLKPALS 308 (731)
T ss_pred HHHHHHHHHHHh
Confidence 126777777776
No 73
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.43 E-value=2.4e-12 Score=135.16 Aligned_cols=156 Identities=22% Similarity=0.324 Sum_probs=94.2
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCCE
Q 008176 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (575)
Q Consensus 279 VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~f 358 (575)
++||++.++.+..++.....+ . .+..+++|+||||||||++|+++|+.++..+
T Consensus 27 ~vG~~~~~~~l~~~l~~~~~~-------~--------------------~~~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 27 FIGQEKVKENLKIFIEAAKKR-------G--------------------EALDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred hcCcHHHHHHHHHHHHHHHhc-------C--------------------CCCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 799999999998887521110 0 0136899999999999999999999999888
Q ss_pred EEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCee
Q 008176 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (575)
Q Consensus 359 v~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v 438 (575)
..+++..+... ..+...+.. ...++||||||||.+... +++.|+..|++..+
T Consensus 80 ~~~~~~~~~~~--------~~l~~~l~~------l~~~~vl~IDEi~~l~~~--------------~~e~l~~~~e~~~~ 131 (328)
T PRK00080 80 RITSGPALEKP--------GDLAAILTN------LEEGDVLFIDEIHRLSPV--------------VEEILYPAMEDFRL 131 (328)
T ss_pred EEEecccccCh--------HHHHHHHHh------cccCCEEEEecHhhcchH--------------HHHHHHHHHHhcce
Confidence 76665543321 112222221 135789999999999765 67778888886543
Q ss_pred cccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHhhhcccCCCCCCchhh
Q 008176 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRA 493 (575)
Q Consensus 439 ~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~rr~~~~IgF~~p~~e 493 (575)
.+--.. ......+......+.+|++++... +...++. |+...+.|+.++.+
T Consensus 132 ~~~l~~---~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s-Rf~~~~~l~~~~~~ 183 (328)
T PRK00080 132 DIMIGK---GPAARSIRLDLPPFTLIGATTRAGLLTSPLRD-RFGIVQRLEFYTVE 183 (328)
T ss_pred eeeecc---CccccceeecCCCceEEeecCCcccCCHHHHH-hcCeeeecCCCCHH
Confidence 220000 000111122223456666666544 4444443 34445555555443
No 74
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.43 E-value=4.2e-13 Score=132.41 Aligned_cols=182 Identities=20% Similarity=0.294 Sum_probs=79.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+||+.+|+.|..+.. ..+|+||+||||||||++|+++...+-.-
T Consensus 4 dI~GQe~aKrAL~iAAa----------------------------------G~h~lLl~GppGtGKTmlA~~l~~lLP~l 49 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAA----------------------------------GGHHLLLIGPPGTGKTMLARRLPSLLPPL 49 (206)
T ss_dssp CSSSTHHHHHHHHHHHH----------------------------------CC--EEEES-CCCTHHHHHHHHHHCS--C
T ss_pred hhcCcHHHHHHHHHHHc----------------------------------CCCCeEEECCCCCCHHHHHHHHHHhCCCC
Confidence 48999999999998885 23799999999999999999999776210
Q ss_pred EEE--ecccccc-------------ccccc--cchhhhHHHHHhhh----chhhHHhhccCeEeehhHhhhhHhhhhccc
Q 008176 358 FVI--ADATTLT-------------QAGYV--GEDVESILYKLLTV----SDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (575)
Q Consensus 358 fv~--v~~s~l~-------------~sg~v--Ge~~~~~l~~lf~~----a~~~l~~~~~~ILfIDEID~l~~~r~~~~~ 416 (575)
-.. +..+.+. ..-+. ..+ .....++.. ....+..+++||||+||+..+.+.
T Consensus 50 ~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs--~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~------ 121 (206)
T PF01078_consen 50 TEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHS--ASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRS------ 121 (206)
T ss_dssp CEECCESS--S-TT---S---EEEE---EEEE-TT----HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HH------
T ss_pred chHHHhhhccccccccCCCCCceecCCCcccCCCC--cCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHH------
Confidence 000 0000000 00000 000 000111111 123567789999999999999877
Q ss_pred CCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhhc
Q 008176 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (575)
Q Consensus 417 ~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~~ 496 (575)
+.++|++.||.+.+.|... ...+....++++|+|.|.-. +.. |..+....
T Consensus 122 --------vld~Lr~ple~g~v~i~R~--------~~~~~~Pa~f~lv~a~NPcp----------CG~--~~~~~~~C-- 171 (206)
T PF01078_consen 122 --------VLDALRQPLEDGEVTISRA--------GGSVTYPARFLLVAAMNPCP----------CGY--YGDPDNRC-- 171 (206)
T ss_dssp --------HHHHHHHHHHHSBEEEEET--------TEEEEEB--EEEEEEE-S---------------------------
T ss_pred --------HHHHHHHHHHCCeEEEEEC--------CceEEEecccEEEEEecccc----------ccc--cccccccc--
Confidence 9999999999776665222 12344566788899887532 111 11111111
Q ss_pred cCCCChHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHH
Q 008176 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQ 544 (575)
Q Consensus 497 ~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~Lsede 544 (575)
.+.+.....+.. .++-.+++||+..+.+..++.+|
T Consensus 172 ---~Cs~~~~~~Y~~----------rlsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 172 ---RCSPRQIRRYQS----------RLSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp ------------------------------------------------
T ss_pred ---cccccccccccc----------cccccccccccccccccccccCC
Confidence 011111222222 25678999999999998887654
No 75
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.42 E-value=4.6e-13 Score=140.46 Aligned_cols=115 Identities=18% Similarity=0.218 Sum_probs=82.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEecccc-ccccccccchhhhHHHH-----HhhhchhhHHhhccCeEeehhH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT-LTQAGYVGEDVESILYK-----LLTVSDYNVAAAQQGIVYIDEV 404 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~-l~~sg~vGe~~~~~l~~-----lf~~a~~~l~~~~~~ILfIDEI 404 (575)
+++||.||||||||++|+.+|+.++.++++++++. +...+++|..... +.. .|.......+...++++++||+
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~-l~~g~~~~~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIV-LKDGKQITEFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceee-ccCCcceeEEecCcchhHHhCCeEEEechh
Confidence 68999999999999999999999999999999987 4445577764211 100 1111111223356788999999
Q ss_pred hhhhHhhhhcccCCCcchHHHHHHHHHHhh-CCeecccCCCcccCCCCCcceecCCC
Q 008176 405 DKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKD 460 (575)
Q Consensus 405 D~l~~~r~~~~~~~~~~~e~vq~aLL~~LE-g~~v~vpe~g~~~~~~~~~ivi~tsn 460 (575)
|++.++ +++.|+.+|| ++.+.+++.+.....|..+.++.|.|
T Consensus 144 n~a~p~--------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~N 186 (327)
T TIGR01650 144 DAGRPD--------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATAN 186 (327)
T ss_pred hccCHH--------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeC
Confidence 999887 9999999999 67888877665554544444444444
No 76
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.42 E-value=4.9e-13 Score=145.62 Aligned_cols=163 Identities=19% Similarity=0.365 Sum_probs=120.2
Q ss_pred hcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 275 Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
....++|++.+++.+...+. .+.....+||++|++||||..+|++|.+..
T Consensus 139 ~~~~liG~S~am~~l~~~i~------------------------------kvA~s~a~VLI~GESGtGKElvAr~IH~~S 188 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIA------------------------------KVAPSDASVLITGESGTGKELVARAIHQAS 188 (464)
T ss_pred ccCCceecCHHHHHHHHHHH------------------------------HHhCCCCCEEEECCCCCcHHHHHHHHHhhC
Confidence 34468999999999998885 111234789999999999999999998776
Q ss_pred ---CCCEEEeccccccc----cccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHH
Q 008176 355 ---NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (575)
Q Consensus 355 ---~~~fv~v~~s~l~~----sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~ 427 (575)
+.||+.+||..+.+ +.+.|+. ...++.........+..+++|+||||||..|+.. +|.
T Consensus 189 ~R~~~PFVavNcaAip~~l~ESELFGhe-kGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~--------------~Q~ 253 (464)
T COG2204 189 PRAKGPFIAVNCAAIPENLLESELFGHE-KGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLE--------------LQV 253 (464)
T ss_pred cccCCCceeeecccCCHHHHHHHhhccc-ccCcCCcccccCcceeEcCCceEEeeccccCCHH--------------HHH
Confidence 57999999998653 3344443 2233333333333456688999999999999988 999
Q ss_pred HHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhh
Q 008176 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (575)
Q Consensus 428 aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e 493 (575)
.||++|+++.+. +.+....+.+ ++.+|++|+ .+|++.+..++|+..+.|.+....
T Consensus 254 kLLRvLqe~~~~-------rvG~~~~i~v---dvRiIaaT~-~dL~~~v~~G~FReDLyyRLnV~~ 308 (464)
T COG2204 254 KLLRVLQEREFE-------RVGGNKPIKV---DVRIIAATN-RDLEEEVAAGRFREDLYYRLNVVP 308 (464)
T ss_pred HHHHHHHcCeeE-------ecCCCcccce---eeEEEeecC-cCHHHHHHcCCcHHHHHhhhccce
Confidence 999999965443 2222233333 489999998 689999999999888888765543
No 77
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.40 E-value=1.1e-12 Score=143.54 Aligned_cols=159 Identities=20% Similarity=0.341 Sum_probs=117.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
.|+|.+.++.++.+.+. + ++..+..||+.|++||||..+|++|.+..
T Consensus 246 ~Iig~S~~m~~~~~~ak----r--------------------------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~ 295 (560)
T COG3829 246 DIIGESPAMLRVLELAK----R--------------------------IAKTDSTVLILGESGTGKELFARAIHNLSPRA 295 (560)
T ss_pred hhccCCHHHHHHHHHHH----h--------------------------hcCCCCcEEEecCCCccHHHHHHHHHhcCccc
Confidence 48999999998887774 0 11234789999999999999999998766
Q ss_pred CCCEEEeccccccc----cccccchhhhHHHHHhhh-chhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHH
Q 008176 355 NVPFVIADATTLTQ----AGYVGEDVESILYKLLTV-SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (575)
Q Consensus 355 ~~~fv~v~~s~l~~----sg~vGe~~~~~l~~lf~~-a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aL 429 (575)
+.||+.+||..+-+ +.+.|.. ...++..... ....++.+++|.||||||..|+.. .|..|
T Consensus 296 ~~PFIaiNCaAiPe~LlESELFGye-~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~--------------LQaKL 360 (560)
T COG3829 296 NGPFIAINCAAIPETLLESELFGYE-KGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLP--------------LQAKL 360 (560)
T ss_pred CCCeEEEecccCCHHHHHHHHhCcC-CccccccccCCCCcceeeccCCeEEehhhccCCHH--------------HHHHH
Confidence 78999999998543 4445553 3333333222 223456688999999999999988 99999
Q ss_pred HHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchh
Q 008176 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVR 492 (575)
Q Consensus 430 L~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~ 492 (575)
|++|+++.+. +.+....+.+| +++|++|| .++++++..++|+..+.|....-
T Consensus 361 LRVLQEkei~-------rvG~t~~~~vD---VRIIAATN-~nL~~~i~~G~FReDLYYRLNV~ 412 (560)
T COG3829 361 LRVLQEKEIE-------RVGGTKPIPVD---VRIIAATN-RNLEKMIAEGTFREDLYYRLNVI 412 (560)
T ss_pred HHHHhhceEE-------ecCCCCceeeE---EEEEeccC-cCHHHHHhcCcchhhheeeecee
Confidence 9999965543 22333333444 89999999 58999999999999998876543
No 78
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=2.8e-12 Score=145.88 Aligned_cols=105 Identities=30% Similarity=0.414 Sum_probs=70.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+||||+++++.|..++..... .+.+||+||+||||||+|+++|+.+++.
T Consensus 17 EVIGQe~Vv~~L~~aL~~gRL-------------------------------~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 17 SLVGQEHVVRALTHALDGGRL-------------------------------HHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred HHcCcHHHHHHHHHHHhcCCC-------------------------------CeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 389999999999988851100 1446899999999999999999988642
Q ss_pred ------------------------EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 358 ------------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
+++++..+ -.| ...++++++...+........|+||||+|.|...
T Consensus 66 ~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas-----~rg---VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~--- 134 (830)
T PRK07003 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAAS-----NRG---VDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH--- 134 (830)
T ss_pred cCCCCCCCcccHHHHHHhcCCCceEEEecccc-----ccc---HHHHHHHHHHHHhccccCCceEEEEeChhhCCHH---
Confidence 22222211 011 1223444433222222245679999999999876
Q ss_pred cccCCCcchHHHHHHHHHHhhC
Q 008176 414 LNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+|+||+.||+
T Consensus 135 -----------A~NALLKtLEE 145 (830)
T PRK07003 135 -----------AFNAMLKTLEE 145 (830)
T ss_pred -----------HHHHHHHHHHh
Confidence 79999999994
No 79
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.1e-12 Score=135.42 Aligned_cols=183 Identities=19% Similarity=0.282 Sum_probs=119.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~ 410 (575)
+++||+||||||||+.|+-||+..|.++..+.+.++.+.|--+ ...+.++|+-+. ....+-+|||||+|.+..+
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qa---VTkiH~lFDWak---kS~rGLllFIDEADAFLce 458 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQA---VTKIHKLFDWAK---KSRRGLLLFIDEADAFLCE 458 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHH---HHHHHHHHHHHh---hcccceEEEehhhHHHHHH
Confidence 6999999999999999999999999999888888887644222 234455555443 3456779999999999999
Q ss_pred hhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCc-ChHHHHHhhhcccCCCCCC
Q 008176 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV-DIEKTISERRQDSSIGFGA 489 (575)
Q Consensus 411 r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~-dL~~~i~~rr~~~~IgF~~ 489 (575)
|+... .+|....+|..+|-. .+. ....++++.++|.+ ++|.++.+ |+|..|+|++
T Consensus 459 Rnkty-----mSEaqRsaLNAlLfR------------TGd------qSrdivLvlAtNrpgdlDsAV~D-Ride~veFpL 514 (630)
T KOG0742|consen 459 RNKTY-----MSEAQRSALNALLFR------------TGD------QSRDIVLVLATNRPGDLDSAVND-RIDEVVEFPL 514 (630)
T ss_pred hchhh-----hcHHHHHHHHHHHHH------------hcc------cccceEEEeccCCccchhHHHHh-hhhheeecCC
Confidence 87544 344456666666641 010 12345666666655 58888876 5689999999
Q ss_pred chhhhhccCCCChHHHHHHHHhhhc-chhhhh-cCCCCccccccceEEEcCC-CCHHHHHHHHh
Q 008176 490 PVRANMRAGGVTDAVVTSSLMETVE-SSDLIA-YGLIPEFVGRFPVLVSLLA-LTENQLVQVLT 550 (575)
Q Consensus 490 p~~e~~~~~~l~~~~~~~~ll~~l~-~~dl~~-~gl~Pefi~Rf~~ii~~~~-LsedeL~eIl~ 550 (575)
|.+++ +..++..+++... ..+... -+....+...-...+.+.. ++++-+.+..+
T Consensus 515 PGeEE-------Rfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAk 571 (630)
T KOG0742|consen 515 PGEEE-------RFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAK 571 (630)
T ss_pred CChHH-------HHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHH
Confidence 98876 3444444443333 222211 2333444445577888887 45554544443
No 80
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.38 E-value=4e-12 Score=137.73 Aligned_cols=82 Identities=33% Similarity=0.505 Sum_probs=60.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~ 410 (575)
.+++|+||||||||++|+++|+..+.+++.+++.... ...+++.++.+..........||||||+|.+...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~---------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~ 107 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG---------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA 107 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc---------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH
Confidence 5899999999999999999999999999888875421 1223333333321111235689999999999876
Q ss_pred hhhcccCCCcchHHHHHHHHHHhhC
Q 008176 411 AESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 411 r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.|+.|+..|++
T Consensus 108 --------------~q~~LL~~le~ 118 (413)
T PRK13342 108 --------------QQDALLPHVED 118 (413)
T ss_pred --------------HHHHHHHHhhc
Confidence 78999999983
No 81
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.36 E-value=3.9e-12 Score=148.88 Aligned_cols=166 Identities=22% Similarity=0.300 Sum_probs=112.3
Q ss_pred hhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHH
Q 008176 273 KGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 273 ~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~ 352 (575)
..++ .|+||++.++.+.+.+.... +.+++|+||||||||++|+.+|+
T Consensus 184 ~~ld-~~iGr~~ei~~~i~~l~r~~--------------------------------~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 184 GKID-PVLGRDDEIRQMIDILLRRR--------------------------------QNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CCCC-cccCCHHHHHHHHHHHhcCC--------------------------------cCceeEECCCCCCHHHHHHHHHH
Confidence 3445 48999999888887775211 26889999999999999999998
Q ss_pred Hh----------CCCEEEecccccc-ccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcc
Q 008176 353 YV----------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVS 421 (575)
Q Consensus 353 ~l----------~~~fv~v~~s~l~-~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~ 421 (575)
.+ +..++.++...+. ...+.|+- +..++..+..... ...++|||||||+.+...+...+ +.|
T Consensus 231 ~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~-e~~lk~ii~e~~~---~~~~~ILfIDEih~l~~~g~~~~-~~d-- 303 (852)
T TIGR03345 231 RIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEF-ENRLKSVIDEVKA---SPQPIILFIDEAHTLIGAGGQAG-QGD-- 303 (852)
T ss_pred HHhhCCCCccccCCeEEEeehhhhhcccccchHH-HHHHHHHHHHHHh---cCCCeEEEEeChHHhccCCCccc-ccc--
Confidence 76 2456777777654 24577774 6777777776431 13578999999999987532111 111
Q ss_pred hHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhhccCCCC
Q 008176 422 GEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501 (575)
Q Consensus 422 ~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~~~~~l~ 501 (575)
+-+.|+..|+. ..+.+|++|+..+.
T Consensus 304 ---~~n~Lkp~l~~-----------------------G~l~~IgaTT~~e~----------------------------- 328 (852)
T TIGR03345 304 ---AANLLKPALAR-----------------------GELRTIAATTWAEY----------------------------- 328 (852)
T ss_pred ---HHHHhhHHhhC-----------------------CCeEEEEecCHHHH-----------------------------
Confidence 44567777762 23667887774221
Q ss_pred hHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHh
Q 008176 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLT 550 (575)
Q Consensus 502 ~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~ 550 (575)
...++ ..|.|.+||. .+.+..++.++..+|+.
T Consensus 329 --------~~~~~--------~d~AL~rRf~-~i~v~eps~~~~~~iL~ 360 (852)
T TIGR03345 329 --------KKYFE--------KDPALTRRFQ-VVKVEEPDEETAIRMLR 360 (852)
T ss_pred --------hhhhh--------ccHHHHHhCe-EEEeCCCCHHHHHHHHH
Confidence 11111 4577778884 67888888888888875
No 82
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.36 E-value=4.6e-13 Score=122.53 Aligned_cols=124 Identities=25% Similarity=0.373 Sum_probs=76.7
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccc-cccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHh
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~-sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~ 410 (575)
+|+|+||||||||++|+.+|+.++.++..++++.... .++.|.-........+...........++|++|||++++.+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~ 80 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPPE 80 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--HH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCHH
Confidence 5899999999999999999999999999999887443 223332111000000111111112347899999999999876
Q ss_pred hhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC
Q 008176 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (575)
Q Consensus 411 r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d 471 (575)
+++.|+.++|+..+.+|+.+.....+... ....++.+|+|+|..+
T Consensus 81 --------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~~~ii~t~N~~~ 125 (139)
T PF07728_consen 81 --------------VLESLLSLLEERRIQLPEGGEEIKEPNND--LASPNFRIIATMNPRD 125 (139)
T ss_dssp --------------HHHTTHHHHSSSEEEE-TSSSEEE--TT--------EEEEEEESSST
T ss_pred --------------HHHHHHHHHhhCcccccCCCcEEecCccc--ccccceEEEEEEcCCC
Confidence 99999999998877766554333222211 2233689999998655
No 83
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.36 E-value=1.2e-11 Score=127.28 Aligned_cols=160 Identities=24% Similarity=0.296 Sum_probs=95.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+++||+.++..|..++.. + .-.++||+||||||||+.|+++|+.++.+
T Consensus 37 e~~gQe~vV~~L~~a~~~----------~----------------------~lp~~LFyGPpGTGKTStalafar~L~~~ 84 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLR----------R----------------------ILPHYLFYGPPGTGKTSTALAFARALNCE 84 (346)
T ss_pred hhcchHHHHHHHHHHHhh----------c----------------------CCceEEeeCCCCCcHhHHHHHHHHHhcCc
Confidence 379999999999999961 0 01589999999999999999999998653
Q ss_pred ------EEEeccccccccccccchhhhHHHHHhhhc--hhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHH
Q 008176 358 ------FVIADATTLTQAGYVGEDVESILYKLLTVS--DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (575)
Q Consensus 358 ------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a--~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aL 429 (575)
+...+.++-.....+.+. .+.+.++.... ..........|++|||.|.|..+ .|++|
T Consensus 85 ~~~~~rvl~lnaSderGisvvr~K-ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd--------------aq~aL 149 (346)
T KOG0989|consen 85 QLFPCRVLELNASDERGISVVREK-IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD--------------AQAAL 149 (346)
T ss_pred cccccchhhhcccccccccchhhh-hcCHHHHhhccccccCCCCCcceEEEEechhhhhHH--------------HHHHH
Confidence 233344333222222221 11111111100 00011123479999999999987 99999
Q ss_pred HHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHhhhcccCCCCCCchhhhhccCCCChHHHHHH
Q 008176 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSS 508 (575)
Q Consensus 430 L~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ 508 (575)
.+.||.. ..+++||.-+|+.+ +...+..|. ...++.++..+.+..+
T Consensus 150 rr~mE~~---------------------s~~trFiLIcnylsrii~pi~SRC------------~KfrFk~L~d~~iv~r 196 (346)
T KOG0989|consen 150 RRTMEDF---------------------SRTTRFILICNYLSRIIRPLVSRC------------QKFRFKKLKDEDIVDR 196 (346)
T ss_pred HHHHhcc---------------------ccceEEEEEcCChhhCChHHHhhH------------HHhcCCCcchHHHHHH
Confidence 9999931 22344555455544 444444332 2233345555666666
Q ss_pred HHhhhcchh
Q 008176 509 LMETVESSD 517 (575)
Q Consensus 509 ll~~l~~~d 517 (575)
+.....++.
T Consensus 197 L~~Ia~~E~ 205 (346)
T KOG0989|consen 197 LEKIASKEG 205 (346)
T ss_pred HHHHHHHhC
Confidence 666555543
No 84
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=4.4e-12 Score=139.01 Aligned_cols=105 Identities=30% Similarity=0.355 Sum_probs=69.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+||+.+++.|..++..... ++.+||+||+|||||++|+++|+.++..
T Consensus 19 dvVGQe~iv~~L~~~i~~~ri-------------------------------~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 19 DVIHQDLAIGALQNALKSGKI-------------------------------GHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred HHhChHHHHHHHHHHHHcCCC-------------------------------CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 389999999999988851100 1347899999999999999999988652
Q ss_pred ------------------------EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 358 ------------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
++.+++.. -.|. ..++++.+............|++|||+|.+...
T Consensus 68 ~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas-----~~gV---d~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~--- 136 (484)
T PRK14956 68 NPIGNEPCNECTSCLEITKGISSDVLEIDAAS-----NRGI---ENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ--- 136 (484)
T ss_pred cccCccccCCCcHHHHHHccCCccceeechhh-----cccH---HHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH---
Confidence 22222211 1111 223333332222112234569999999999876
Q ss_pred cccCCCcchHHHHHHHHHHhhC
Q 008176 414 LNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+++||+.||+
T Consensus 137 -----------A~NALLKtLEE 147 (484)
T PRK14956 137 -----------SFNALLKTLEE 147 (484)
T ss_pred -----------HHHHHHHHhhc
Confidence 89999999994
No 85
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.34 E-value=6.7e-12 Score=137.46 Aligned_cols=123 Identities=19% Similarity=0.210 Sum_probs=83.5
Q ss_pred hHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHH
Q 008176 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (575)
Q Consensus 268 ~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLA 347 (575)
...+.+.+++.|+|++++++.+..++. ..+++||+||||||||++|
T Consensus 11 i~~l~~~l~~~i~gre~vI~lll~aal----------------------------------ag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 11 ISRLSSALEKGLYERSHAIRLCLLAAL----------------------------------SGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHHhhhccCcHHHHHHHHHHHc----------------------------------cCCCEEEECCCChhHHHHH
Confidence 456889999999999999999988773 3479999999999999999
Q ss_pred HHHHHHhCC--CEEEeccccccccccccchhhhHH--HHHhhhc-hhhHHhhccCeEeehhHhhhhHhhhhcccCCCcch
Q 008176 348 KTLARYVNV--PFVIADATTLTQAGYVGEDVESIL--YKLLTVS-DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (575)
Q Consensus 348 raLA~~l~~--~fv~v~~s~l~~sg~vGe~~~~~l--~~lf~~a-~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~ 422 (575)
++++...+. +|..+.+.-.++.++.|....... ...|... ...+ ....+||+|||.++.++
T Consensus 57 raLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L--~~A~lLfLDEI~rasp~------------ 122 (498)
T PRK13531 57 RRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYL--PEAEIVFLDEIWKAGPA------------ 122 (498)
T ss_pred HHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCcc--ccccEEeecccccCCHH------------
Confidence 999987643 444333321122334443100110 0111110 0001 12239999999999888
Q ss_pred HHHHHHHHHHhhCCeecc
Q 008176 423 EGVQQALLKMLEGTVVNV 440 (575)
Q Consensus 423 e~vq~aLL~~LEg~~v~v 440 (575)
+|++||++|+++.+.+
T Consensus 123 --~QsaLLeam~Er~~t~ 138 (498)
T PRK13531 123 --ILNTLLTAINERRFRN 138 (498)
T ss_pred --HHHHHHHHHHhCeEec
Confidence 9999999998777664
No 86
>PLN03025 replication factor C subunit; Provisional
Probab=99.34 E-value=5.3e-12 Score=132.16 Aligned_cols=105 Identities=30% Similarity=0.387 Sum_probs=69.0
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCC--
Q 008176 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (575)
Q Consensus 279 VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~-- 356 (575)
|+||+++++.|..++... ...|+||+||||||||++|+++|+.+..
T Consensus 15 ~~g~~~~~~~L~~~~~~~--------------------------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~ 62 (319)
T PLN03025 15 IVGNEDAVSRLQVIARDG--------------------------------NMPNLILSGPPGTGKTTSILALAHELLGPN 62 (319)
T ss_pred hcCcHHHHHHHHHHHhcC--------------------------------CCceEEEECCCCCCHHHHHHHHHHHHhccc
Confidence 799999999988776410 0147999999999999999999998732
Q ss_pred ---CEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHh
Q 008176 357 ---PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (575)
Q Consensus 357 ---~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~L 433 (575)
.++.++.++. .|.+..+...+.+.............|++|||+|.+... .|++|++.|
T Consensus 63 ~~~~~~eln~sd~-----~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~--------------aq~aL~~~l 123 (319)
T PLN03025 63 YKEAVLELNASDD-----RGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG--------------AQQALRRTM 123 (319)
T ss_pred Cccceeeeccccc-----ccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH--------------HHHHHHHHH
Confidence 3455555432 222211111112221111111124579999999999876 799999999
Q ss_pred h
Q 008176 434 E 434 (575)
Q Consensus 434 E 434 (575)
|
T Consensus 124 E 124 (319)
T PLN03025 124 E 124 (319)
T ss_pred h
Confidence 8
No 87
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=7.3e-12 Score=140.86 Aligned_cols=140 Identities=26% Similarity=0.357 Sum_probs=88.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCC-
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~- 356 (575)
+||||+.+++.|..++..... .+.+||+||+|+|||++|+.+|+.+++
T Consensus 17 dVIGQe~vv~~L~~al~~gRL-------------------------------pHA~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQRL-------------------------------HHAYLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred HHcCcHHHHHHHHHHHHhCCC-------------------------------ceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 489999999999998851111 145689999999999999999998865
Q ss_pred ----------------------------CEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhh
Q 008176 357 ----------------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (575)
Q Consensus 357 ----------------------------~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~ 408 (575)
++++++... -.| ...++++.+...+........|++|||+|.|.
T Consensus 66 ~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas-----~~g---VDdIReLie~~~~~P~~gr~KViIIDEah~Ls 137 (700)
T PRK12323 66 GADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAAS-----NRG---VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT 137 (700)
T ss_pred CccccccCCCCCCcccHHHHHHHcCCCCcceEecccc-----cCC---HHHHHHHHHHHHhchhcCCceEEEEEChHhcC
Confidence 122222211 111 12234444332222223456799999999998
Q ss_pred HhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCC-CcChHHHHHhhhcccCCCC
Q 008176 409 KKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGA-FVDIEKTISERRQDSSIGF 487 (575)
Q Consensus 409 ~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn-~~dL~~~i~~rr~~~~IgF 487 (575)
.. .+|+||+.||+ ...+++||++++ ...+...|+.|. ..+.|
T Consensus 138 ~~--------------AaNALLKTLEE---------------------PP~~v~FILaTtep~kLlpTIrSRC--q~f~f 180 (700)
T PRK12323 138 NH--------------AFNAMLKTLEE---------------------PPEHVKFILATTDPQKIPVTVLSRC--LQFNL 180 (700)
T ss_pred HH--------------HHHHHHHhhcc---------------------CCCCceEEEEeCChHhhhhHHHHHH--Hhccc
Confidence 76 89999999994 122344454444 334666676664 34555
Q ss_pred CCchhh
Q 008176 488 GAPVRA 493 (575)
Q Consensus 488 ~~p~~e 493 (575)
..+..+
T Consensus 181 ~~ls~e 186 (700)
T PRK12323 181 KQMPPG 186 (700)
T ss_pred CCCChH
Confidence 554443
No 88
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.33 E-value=2.3e-12 Score=128.28 Aligned_cols=157 Identities=26% Similarity=0.355 Sum_probs=108.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|||.++.++.|..... -| .-.|++|.|||||||||-+.++|+++-.+
T Consensus 28 dIVGNe~tv~rl~via~---------------~g-----------------nmP~liisGpPG~GKTTsi~~LAr~LLG~ 75 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAK---------------EG-----------------NMPNLIISGPPGTGKTTSILCLARELLGD 75 (333)
T ss_pred HhhCCHHHHHHHHHHHH---------------cC-----------------CCCceEeeCCCCCchhhHHHHHHHHHhCh
Confidence 48999999999987664 01 11589999999999999999999887332
Q ss_pred -----EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHH
Q 008176 358 -----FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (575)
Q Consensus 358 -----fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~ 432 (575)
+.+++++ +-.|-++.+.-.+.|.+.+..+......||+|||+|.+..- .|++|.+.
T Consensus 76 ~~ke~vLELNAS-----deRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g--------------AQQAlRRt 136 (333)
T KOG0991|consen 76 SYKEAVLELNAS-----DERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG--------------AQQALRRT 136 (333)
T ss_pred hhhhHhhhccCc-----cccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH--------------HHHHHHHH
Confidence 3445554 45566666666778887776655677889999999999876 89999999
Q ss_pred hhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhh
Q 008176 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (575)
Q Consensus 433 LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~ 512 (575)
||= ...+.++.++|.... -+-+.+..| +..+++.+++++.+..++++.
T Consensus 137 MEi-------------------yS~ttRFalaCN~s~-KIiEPIQSR------------CAiLRysklsd~qiL~Rl~~v 184 (333)
T KOG0991|consen 137 MEI-------------------YSNTTRFALACNQSE-KIIEPIQSR------------CAILRYSKLSDQQILKRLLEV 184 (333)
T ss_pred HHH-------------------Hcccchhhhhhcchh-hhhhhHHhh------------hHhhhhcccCHHHHHHHHHHH
Confidence 991 113334444443322 133333332 334556677888888888877
Q ss_pred hcchh
Q 008176 513 VESSD 517 (575)
Q Consensus 513 l~~~d 517 (575)
.+.+.
T Consensus 185 ~k~Ek 189 (333)
T KOG0991|consen 185 AKAEK 189 (333)
T ss_pred HHHhC
Confidence 76544
No 89
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=1.4e-11 Score=135.69 Aligned_cols=104 Identities=32% Similarity=0.438 Sum_probs=70.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCC-
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~- 356 (575)
+|+||+++++.|..++.... -++.+||+|||||||||+|+++|+.++.
T Consensus 15 divGq~~i~~~L~~~i~~~~-------------------------------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 15 EVVGQDHVKKLIINALKKNS-------------------------------ISHAYIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred HccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 38999999999888775111 0245789999999999999999998754
Q ss_pred -----------------------CEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 357 -----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 357 -----------------------~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
.++.++++. ..|. ..++++.+............||+|||+|.+...
T Consensus 64 ~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~-----~~gi---d~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~--- 132 (472)
T PRK14962 64 NRKGVEPCNECRACRSIDEGTFMDVIELDAAS-----NRGI---DEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE--- 132 (472)
T ss_pred cCCCCCCCcccHHHHHHhcCCCCccEEEeCcc-----cCCH---HHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH---
Confidence 233343321 1111 223333333222112235679999999999765
Q ss_pred cccCCCcchHHHHHHHHHHhh
Q 008176 414 LNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LE 434 (575)
.+++|+..|+
T Consensus 133 -----------a~~~LLk~LE 142 (472)
T PRK14962 133 -----------AFNALLKTLE 142 (472)
T ss_pred -----------HHHHHHHHHH
Confidence 7899999998
No 90
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.31 E-value=8.5e-12 Score=131.62 Aligned_cols=149 Identities=21% Similarity=0.281 Sum_probs=95.5
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---C
Q 008176 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (575)
Q Consensus 279 VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l---~ 355 (575)
++|++.+++.+.+.+... .....+|||+|++||||+++|++|.... +
T Consensus 1 liG~S~~m~~~~~~~~~~------------------------------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~ 50 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL------------------------------APLDRPVLIIGERGTGKELIAARLHYLSKRWQ 50 (329)
T ss_pred CCcCCHHHHHHHHHHHHH------------------------------hCCCCCEEEECCCCChHHHHHHHHHHhcCccC
Confidence 478888888888777511 1123689999999999999999998765 4
Q ss_pred CCEEEeccccccccccccchhhhHHHHHhhhc----hhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHH
Q 008176 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVS----DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (575)
Q Consensus 356 ~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a----~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~ 431 (575)
.||+.++|..+.+. .............|..+ ...+..+.+++||||||+.+... +|..|+.
T Consensus 51 ~pfv~vnc~~~~~~-~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~--------------~Q~~Ll~ 115 (329)
T TIGR02974 51 GPLVKLNCAALSEN-LLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASLL--------------VQEKLLR 115 (329)
T ss_pred CCeEEEeCCCCChH-HHHHHHhccccccccCcccccCCchhhCCCCEEEeCChHhCCHH--------------HHHHHHH
Confidence 79999999876531 11000000000111111 11244567899999999999988 9999999
Q ss_pred HhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhccc
Q 008176 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (575)
Q Consensus 432 ~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~ 483 (575)
+|+...+.- .+. . .....++.+|++++ .++++.+..+.|+.
T Consensus 116 ~l~~~~~~~-------~g~--~-~~~~~~~RiI~at~-~~l~~~~~~g~fr~ 156 (329)
T TIGR02974 116 VIEYGEFER-------VGG--S-QTLQVDVRLVCATN-ADLPALAAEGRFRA 156 (329)
T ss_pred HHHcCcEEe-------cCC--C-ceeccceEEEEech-hhHHHHhhcCchHH
Confidence 998543221 011 1 11234688888887 46666666555433
No 91
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=1.5e-11 Score=142.10 Aligned_cols=105 Identities=28% Similarity=0.354 Sum_probs=70.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+||+.+++.|..++..... ++.+||+||+|||||++|+++|+.+++.
T Consensus 17 dIIGQe~Iv~~LknaI~~~rl-------------------------------~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 17 QMVGQSHVLHALTNALTQQRL-------------------------------HHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred HhcCcHHHHHHHHHHHHhCCC-------------------------------CeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 389999999999988851110 1345899999999999999999988653
Q ss_pred E------------------------EEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 358 F------------------------VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 358 f------------------------v~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
- +.++..+ ..+ ...++++.....+........|+||||+|.|...
T Consensus 66 ~~~~~~pCg~C~sC~~i~~g~~~DviEidAas-----~~k---VDdIReLie~v~~~P~~gk~KViIIDEAh~LT~e--- 134 (944)
T PRK14949 66 QGVTATPCGVCSSCVEIAQGRFVDLIEVDAAS-----RTK---VDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS--- 134 (944)
T ss_pred cCCCCCCCCCchHHHHHhcCCCceEEEecccc-----ccC---HHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHH---
Confidence 1 1111110 111 1223444333222222245679999999999877
Q ss_pred cccCCCcchHHHHHHHHHHhhC
Q 008176 414 LNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+++||+.||+
T Consensus 135 -----------AqNALLKtLEE 145 (944)
T PRK14949 135 -----------SFNALLKTLEE 145 (944)
T ss_pred -----------HHHHHHHHHhc
Confidence 89999999994
No 92
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=1.5e-11 Score=139.29 Aligned_cols=105 Identities=30% Similarity=0.358 Sum_probs=71.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+||+.+++.|..++..... .+.+||+||+|||||++|+++|+.+++.
T Consensus 17 divGQe~vv~~L~~~l~~~rl-------------------------------~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 17 EVVGQEHVLTALANALDLGRL-------------------------------HHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred HhcCcHHHHHHHHHHHHcCCC-------------------------------CeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 389999999999988851110 1346899999999999999999988652
Q ss_pred ------------------------EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 358 ------------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
++.++... ..+ ...++++.....+........|++|||+|.|...
T Consensus 66 ~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas-----~~~---VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~--- 134 (647)
T PRK07994 66 TGITATPCGECDNCREIEQGRFVDLIEIDAAS-----RTK---VEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH--- 134 (647)
T ss_pred cCCCCCCCCCCHHHHHHHcCCCCCceeecccc-----cCC---HHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH---
Confidence 22232221 111 1223444333222222245679999999999877
Q ss_pred cccCCCcchHHHHHHHHHHhhC
Q 008176 414 LNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+|+||+.||+
T Consensus 135 -----------a~NALLKtLEE 145 (647)
T PRK07994 135 -----------SFNALLKTLEE 145 (647)
T ss_pred -----------HHHHHHHHHHc
Confidence 89999999994
No 93
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=1.1e-11 Score=144.04 Aligned_cols=105 Identities=33% Similarity=0.360 Sum_probs=70.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
.||||+.+++.|..++..... .+.+||+||+|||||++|++||+.+++.
T Consensus 16 eiiGqe~v~~~L~~~i~~~ri-------------------------------~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGRI-------------------------------NHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCCC-------------------------------CceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 389999999999988851110 1347899999999999999999988642
Q ss_pred --------------------------EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhh
Q 008176 358 --------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (575)
Q Consensus 358 --------------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r 411 (575)
++.++... ..| ...++++.+...+........|+||||+|.|...
T Consensus 65 ~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas-----~~~---Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~- 135 (824)
T PRK07764 65 EGPTSTPCGECDSCVALAPGGPGSLDVTEIDAAS-----HGG---VDDARELRERAFFAPAESRYKIFIIDEAHMVTPQ- 135 (824)
T ss_pred cCCCCCCCcccHHHHHHHcCCCCCCcEEEecccc-----cCC---HHHHHHHHHHHHhchhcCCceEEEEechhhcCHH-
Confidence 12222211 111 1223333322222222346679999999999876
Q ss_pred hhcccCCCcchHHHHHHHHHHhhC
Q 008176 412 ESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 412 ~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+|+||+.||+
T Consensus 136 -------------a~NaLLK~LEE 146 (824)
T PRK07764 136 -------------GFNALLKIVEE 146 (824)
T ss_pred -------------HHHHHHHHHhC
Confidence 89999999994
No 94
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.30 E-value=1.2e-11 Score=129.60 Aligned_cols=81 Identities=27% Similarity=0.457 Sum_probs=62.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCC---EEEeccccccccccccchhhhHHHHHhhhchhh-HHhhccCeEeehhHhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVP---FVIADATTLTQAGYVGEDVESILYKLLTVSDYN-VAAAQQGIVYIDEVDK 406 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~---fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~-l~~~~~~ILfIDEID~ 406 (575)
..++||||||||||+||+.|+.....+ |++++++.-. .+-+++.|+.+... ..-.+..|||||||++
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~---------t~dvR~ife~aq~~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK---------TNDVRDIFEQAQNEKSLTKRKTILFIDEIHR 233 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc---------hHHHHHHHHHHHHHHhhhcceeEEEeHHhhh
Confidence 468899999999999999999887665 6666665422 34467777766542 2235678999999999
Q ss_pred hhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 407 ITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 407 l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
+.+. .|+.+|-.+|
T Consensus 234 FNks--------------QQD~fLP~VE 247 (554)
T KOG2028|consen 234 FNKS--------------QQDTFLPHVE 247 (554)
T ss_pred hhhh--------------hhhcccceec
Confidence 9887 7888888887
No 95
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.30 E-value=1e-11 Score=131.76 Aligned_cols=135 Identities=24% Similarity=0.394 Sum_probs=84.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC--
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~-- 355 (575)
.|+||+++|+.|...+.++ .-+++||.|++|||||++||++++.+.
T Consensus 18 ~ivGq~~~k~al~~~~~~p--------------------------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~ 65 (350)
T CHL00081 18 AIVGQEEMKLALILNVIDP--------------------------------KIGGVMIMGDRGTGKSTTIRALVDLLPEI 65 (350)
T ss_pred HHhChHHHHHHHHHhccCC--------------------------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4899999999999877521 126899999999999999999987762
Q ss_pred -----CCEEEecccc---------------------------------ccccccccc-hhhhHHHHHhhhc-----hhhH
Q 008176 356 -----VPFVIADATT---------------------------------LTQAGYVGE-DVESILYKLLTVS-----DYNV 391 (575)
Q Consensus 356 -----~~fv~v~~s~---------------------------------l~~sg~vGe-~~~~~l~~lf~~a-----~~~l 391 (575)
.+|. .+... .++..++|. +.+. .+... ...+
T Consensus 66 ~~~~~~pf~-~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~----al~~g~~~~~~GlL 140 (350)
T CHL00081 66 EVVKDDPFN-SHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEK----ALTEGVKAFEPGLL 140 (350)
T ss_pred CccCCCCCC-CCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHH----HhhcCcccccCCee
Confidence 2221 00000 000111111 1111 11111 1234
Q ss_pred HhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC
Q 008176 392 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (575)
Q Consensus 392 ~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d 471 (575)
..+++++||||||+.+.+. +|+.|++.|+++.+.+...|.. .-...++++|+|.|..+
T Consensus 141 ~~A~~GiL~lDEInrL~~~--------------~Q~~LLeam~e~~~~ier~G~s--------~~~p~rfiviaT~np~e 198 (350)
T CHL00081 141 AKANRGILYVDEVNLLDDH--------------LVDILLDSAASGWNTVEREGIS--------IRHPARFVLVGSGNPEE 198 (350)
T ss_pred eecCCCEEEecChHhCCHH--------------HHHHHHHHHHhCCeEEeeCCee--------eecCCCEEEEeccCccc
Confidence 4567899999999999988 9999999999655444222211 11233677788877543
No 96
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.29 E-value=1e-11 Score=131.26 Aligned_cols=140 Identities=22% Similarity=0.348 Sum_probs=84.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
.|+||+++++.+..++.. ...+|+||.|+||||||++|+++++.+
T Consensus 9 ~i~Gq~~~~~~l~~~~~~--------------------------------~~~~~vLl~G~pG~gKT~lar~la~llP~~ 56 (334)
T PRK13407 9 AIVGQEEMKQAMVLTAID--------------------------------PGIGGVLVFGDRGTGKSTAVRALAALLPLI 56 (334)
T ss_pred HhCCHHHHHHHHHHHHhc--------------------------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCc
Confidence 489999999988865420 012689999999999999999999998
Q ss_pred ----CCC--EEEeccc-cc----------------------cccccccc-hhhhHHH-HHhhhchhhHHhhccCeEeehh
Q 008176 355 ----NVP--FVIADAT-TL----------------------TQAGYVGE-DVESILY-KLLTVSDYNVAAAQQGIVYIDE 403 (575)
Q Consensus 355 ----~~~--fv~v~~s-~l----------------------~~sg~vGe-~~~~~l~-~lf~~a~~~l~~~~~~ILfIDE 403 (575)
+.+ +..+.+. +. ++...+|. ++...+. .-+......+..+++++|||||
T Consensus 57 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDE 136 (334)
T PRK13407 57 KAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDE 136 (334)
T ss_pred chhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecC
Confidence 221 1111111 00 00113332 1111110 0011111223346779999999
Q ss_pred HhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC
Q 008176 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (575)
Q Consensus 404 ID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d 471 (575)
|+.+.++ +|+.|++.|++..+.+...|.. .-...+++++++.|..+
T Consensus 137 Inrl~~~--------------~q~~Lle~mee~~v~v~r~G~~--------~~~p~rfiviAt~NP~e 182 (334)
T PRK13407 137 VNLLEDH--------------IVDLLLDVAQSGENVVEREGLS--------IRHPARFVLVGSGNPEE 182 (334)
T ss_pred hHhCCHH--------------HHHHHHHHHHcCCeEEEECCeE--------EecCCCEEEEecCCccc
Confidence 9999887 9999999999765544222221 11234577788887543
No 97
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.29 E-value=1.8e-11 Score=143.58 Aligned_cols=119 Identities=25% Similarity=0.308 Sum_probs=84.7
Q ss_pred hhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHH
Q 008176 273 KGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 273 ~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~ 352 (575)
..|+. |+|+++.++.+.+.+.... +.+++|+||||||||++|+++|.
T Consensus 175 ~~l~~-vigr~~ei~~~i~iL~r~~--------------------------------~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 175 GKLDP-VIGRDEEIRRTIQVLQRRT--------------------------------KNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CCCCc-CCCCHHHHHHHHHHHhcCC--------------------------------cCceEEECCCCCCHHHHHHHHHH
Confidence 34554 8999999888888875111 26899999999999999999998
Q ss_pred Hh----------CCCEEEecccccc-ccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcc
Q 008176 353 YV----------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVS 421 (575)
Q Consensus 353 ~l----------~~~fv~v~~s~l~-~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~ 421 (575)
.+ +.+++.++...+. ...|.|+- +..+...+..... ...++||||||+|.+...... ..
T Consensus 222 ~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~-e~~lk~~~~~~~~---~~~~~ILfIDEih~l~~~~~~------~~ 291 (857)
T PRK10865 222 RIINGEVPEGLKGRRVLALDMGALVAGAKYRGEF-EERLKGVLNDLAK---QEGNVILFIDELHTMVGAGKA------DG 291 (857)
T ss_pred HhhcCCCchhhCCCEEEEEehhhhhhccchhhhh-HHHHHHHHHHHHH---cCCCeEEEEecHHHhccCCCC------cc
Confidence 77 6778888887754 34577774 6677777764311 135789999999999865321 11
Q ss_pred hHHHHHHHHHHhh
Q 008176 422 GEGVQQALLKMLE 434 (575)
Q Consensus 422 ~e~vq~aLL~~LE 434 (575)
...+++.|...++
T Consensus 292 ~~d~~~~lkp~l~ 304 (857)
T PRK10865 292 AMDAGNMLKPALA 304 (857)
T ss_pred chhHHHHhcchhh
Confidence 1226777776665
No 98
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.29 E-value=2.2e-11 Score=142.52 Aligned_cols=117 Identities=26% Similarity=0.338 Sum_probs=85.9
Q ss_pred hhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
.++. |+|+++.++.+.+.+... .+.+++|+||||||||++|+.+|..
T Consensus 177 ~~~~-~igr~~ei~~~~~~L~r~--------------------------------~~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 177 NLDP-VIGREKEIERVIQILGRR--------------------------------TKNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCC-CCCcHHHHHHHHHHHccc--------------------------------ccCCeEEECCCCCCHHHHHHHHHHH
Confidence 4454 899999999999988511 1268999999999999999999987
Q ss_pred h----------CCCEEEecccccc-ccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcch
Q 008176 354 V----------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (575)
Q Consensus 354 l----------~~~fv~v~~s~l~-~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~ 422 (575)
+ +.+++.++++.+. ...|.|+- +..+..++..+. ...++||||||+|.+...... .++
T Consensus 224 i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~-e~rl~~i~~~~~----~~~~~ILfiDEih~l~~~g~~---~g~--- 292 (821)
T CHL00095 224 IVNRDVPDILEDKLVITLDIGLLLAGTKYRGEF-EERLKRIFDEIQ----ENNNIILVIDEVHTLIGAGAA---EGA--- 292 (821)
T ss_pred HHhCCCChhhcCCeEEEeeHHHHhccCCCccHH-HHHHHHHHHHHH----hcCCeEEEEecHHHHhcCCCC---CCc---
Confidence 6 3678889987754 45688874 777888877653 235789999999999865321 111
Q ss_pred HHHHHHHHHHhh
Q 008176 423 EGVQQALLKMLE 434 (575)
Q Consensus 423 e~vq~aLL~~LE 434 (575)
..+.+.|...+.
T Consensus 293 ~~~a~lLkp~l~ 304 (821)
T CHL00095 293 IDAANILKPALA 304 (821)
T ss_pred ccHHHHhHHHHh
Confidence 125666766666
No 99
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.29 E-value=1.7e-11 Score=141.58 Aligned_cols=119 Identities=25% Similarity=0.377 Sum_probs=79.1
Q ss_pred hhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHH
Q 008176 273 KGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 273 ~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~ 352 (575)
..++. ++|.++.++.+.+.+... .+.++||+||||||||++|+++|.
T Consensus 183 g~~~~-liGR~~ei~~~i~iL~r~--------------------------------~~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 183 GGIDP-LIGREKELERAIQVLCRR--------------------------------RKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CCCCc-CcCCCHHHHHHHHHHhcc--------------------------------CCCCeEEECCCCCCHHHHHHHHHH
Confidence 34554 899999999999888611 126889999999999999999997
Q ss_pred Hh----------CCCEEEecccccc-ccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcc
Q 008176 353 YV----------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVS 421 (575)
Q Consensus 353 ~l----------~~~fv~v~~s~l~-~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~ 421 (575)
.+ +..++.++...+. ...|.|+. +..++.++.... ...++||||||||.+...+.. ...
T Consensus 230 ~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~-e~rl~~l~~~l~----~~~~~ILfIDEIh~L~g~g~~-----~~g 299 (758)
T PRK11034 230 RIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF-EKRFKALLKQLE----QDTNSILFIDEIHTIIGAGAA-----SGG 299 (758)
T ss_pred HHHhcCCCchhcCCeEEeccHHHHhcccchhhhH-HHHHHHHHHHHH----hcCCCEEEeccHHHHhccCCC-----CCc
Confidence 64 3445555544433 23466654 566666665432 246789999999999765211 111
Q ss_pred hHHHHHHHHHHhh
Q 008176 422 GEGVQQALLKMLE 434 (575)
Q Consensus 422 ~e~vq~aLL~~LE 434 (575)
...+.+.|..+++
T Consensus 300 ~~d~~nlLkp~L~ 312 (758)
T PRK11034 300 QVDAANLIKPLLS 312 (758)
T ss_pred HHHHHHHHHHHHh
Confidence 2235566666665
No 100
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=2.1e-11 Score=137.47 Aligned_cols=105 Identities=29% Similarity=0.356 Sum_probs=73.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCC-
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~- 356 (575)
+|+||+.+++.|..++.... ..+.+||+||+|||||++|+++|+.+++
T Consensus 16 dVIGQe~vv~~L~~aI~~gr-------------------------------l~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 16 ELVGQNHVSRALSSALERGR-------------------------------LHHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 38999999999998885111 0256789999999999999999998865
Q ss_pred -----------------------CEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 357 -----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 357 -----------------------~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
+++.+++++- .+ ...++++.....+........|++|||+|.+...
T Consensus 65 ~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~-----~~---VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~--- 133 (702)
T PRK14960 65 TGVTSTPCEVCATCKAVNEGRFIDLIEIDAASR-----TK---VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH--- 133 (702)
T ss_pred cCCCCCCCccCHHHHHHhcCCCCceEEeccccc-----CC---HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH---
Confidence 2333333211 11 2234444444333222345679999999999876
Q ss_pred cccCCCcchHHHHHHHHHHhhC
Q 008176 414 LNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+++|++.||+
T Consensus 134 -----------A~NALLKtLEE 144 (702)
T PRK14960 134 -----------SFNALLKTLEE 144 (702)
T ss_pred -----------HHHHHHHHHhc
Confidence 79999999994
No 101
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.28 E-value=2.6e-11 Score=135.51 Aligned_cols=117 Identities=31% Similarity=0.453 Sum_probs=77.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
.++||+.+++.+..++.. ..+.++||+||||||||++|+++++.+
T Consensus 66 ~iiGqs~~i~~l~~al~~--------------------------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~ 113 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCG--------------------------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKN 113 (531)
T ss_pred HeeCcHHHHHHHHHHHhC--------------------------------CCCceEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 389999999998866530 013689999999999999999998653
Q ss_pred -------CCCEEEeccccc--cccc----cccchhhhHHH--HHhhh------chhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 355 -------NVPFVIADATTL--TQAG----YVGEDVESILY--KLLTV------SDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 355 -------~~~fv~v~~s~l--~~sg----~vGe~~~~~l~--~lf~~------a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
+.+|+.++|+.. .+.+ ..|........ ..+.. ....+..+++++||||||+.+++.
T Consensus 114 ~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~--- 190 (531)
T TIGR02902 114 PASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV--- 190 (531)
T ss_pred cCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH---
Confidence 367899998742 1111 11110000000 00100 111234567899999999999988
Q ss_pred cccCCCcchHHHHHHHHHHhhCCeecc
Q 008176 414 LNISRDVSGEGVQQALLKMLEGTVVNV 440 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg~~v~v 440 (575)
+|+.|++.||.+.+.+
T Consensus 191 -----------~q~~LL~~Le~~~~~~ 206 (531)
T TIGR02902 191 -----------QMNKLLKVLEDRKVFL 206 (531)
T ss_pred -----------HHHHHHHHHHhCeeee
Confidence 8999999999665543
No 102
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.26 E-value=4.5e-11 Score=137.59 Aligned_cols=81 Identities=30% Similarity=0.424 Sum_probs=57.8
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHH-hhccCeEeehhHhhhhH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVA-AAQQGIVYIDEVDKITK 409 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~-~~~~~ILfIDEID~l~~ 409 (575)
.+++|+||||||||++|+++|+.++.+++.+++.... . ..+++.+..+..... .....+|||||||.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~------i---~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG------V---KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh------h---HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 5899999999999999999999999888888775311 1 112222222211111 12457999999999987
Q ss_pred hhhhcccCCCcchHHHHHHHHHHhh
Q 008176 410 KAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 410 ~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
. .|++|+..++
T Consensus 124 ~--------------qQdaLL~~lE 134 (725)
T PRK13341 124 A--------------QQDALLPWVE 134 (725)
T ss_pred H--------------HHHHHHHHhc
Confidence 6 7889999888
No 103
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=5.8e-11 Score=126.69 Aligned_cols=105 Identities=28% Similarity=0.344 Sum_probs=68.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+||+++++.+..++.... -++.+||+||+|+|||++|+++|+.+++.
T Consensus 17 ~iiGq~~~~~~l~~~~~~~~-------------------------------~~h~~L~~Gp~G~GKTtla~~la~~l~c~ 65 (363)
T PRK14961 17 DIIGQKHIVTAISNGLSLGR-------------------------------IHHAWLLSGTRGVGKTTIARLLAKSLNCQ 65 (363)
T ss_pred hccChHHHHHHHHHHHHcCC-------------------------------CCeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 38999999999998885100 01446899999999999999999988532
Q ss_pred ------------------------EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 358 ------------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
++.+++.. .. . ...++++.+............|++|||+|.+...
T Consensus 66 ~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~-----~~--~-v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~--- 134 (363)
T PRK14961 66 NGITSNPCRKCIICKEIEKGLCLDLIEIDAAS-----RT--K-VEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH--- 134 (363)
T ss_pred CCCCCCCCCCCHHHHHHhcCCCCceEEecccc-----cC--C-HHHHHHHHHHHhcCcccCCceEEEEEChhhcCHH---
Confidence 11111110 00 1 1223333332211111234569999999999765
Q ss_pred cccCCCcchHHHHHHHHHHhhC
Q 008176 414 LNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+++||+.||+
T Consensus 135 -----------a~naLLk~lEe 145 (363)
T PRK14961 135 -----------SFNALLKTLEE 145 (363)
T ss_pred -----------HHHHHHHHHhc
Confidence 78999999993
No 104
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=4.8e-11 Score=132.68 Aligned_cols=105 Identities=30% Similarity=0.388 Sum_probs=72.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+||+.+++.|..++..... ++.+||+||+|||||++|+++|+.+++.
T Consensus 17 divGq~~v~~~L~~~~~~~~l-------------------------------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQYL-------------------------------HHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred HhcCCHHHHHHHHHHHHhCCC-------------------------------CeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 389999999999998851111 1457899999999999999999988642
Q ss_pred ------------------------EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 358 ------------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
+++++... ..+ ...++++.+...+........|++|||+|.+...
T Consensus 66 ~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas-----~~~---v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~--- 134 (509)
T PRK14958 66 KGVSANPCNDCENCREIDEGRFPDLFEVDAAS-----RTK---VEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH--- 134 (509)
T ss_pred CCCCcccCCCCHHHHHHhcCCCceEEEEcccc-----cCC---HHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH---
Confidence 33333321 111 1223444443322222245679999999999887
Q ss_pred cccCCCcchHHHHHHHHHHhhC
Q 008176 414 LNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+++||+.||+
T Consensus 135 -----------a~naLLk~LEe 145 (509)
T PRK14958 135 -----------SFNALLKTLEE 145 (509)
T ss_pred -----------HHHHHHHHHhc
Confidence 89999999994
No 105
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.24 E-value=2.7e-11 Score=128.22 Aligned_cols=139 Identities=24% Similarity=0.375 Sum_probs=82.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
.|+||+++|+.|...+..+ ..++++|.|++|+||||+++++++.+
T Consensus 5 ~ivgq~~~~~al~~~~~~~--------------------------------~~g~vli~G~~G~gKttl~r~~~~~~~~~ 52 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDP--------------------------------KIGGVMVMGDRGTGKSTAVRALAALLPEI 52 (337)
T ss_pred ccccHHHHHHHHHHHhcCC--------------------------------CCCeEEEEcCCCCCHHHHHHHHHHhhccc
Confidence 4899999999987666311 13789999999999999999999877
Q ss_pred ----CCCEE-------------Ee--cc-------------cc----ccccccccch-hhhHH-HHHhhhchhhHHhhcc
Q 008176 355 ----NVPFV-------------IA--DA-------------TT----LTQAGYVGED-VESIL-YKLLTVSDYNVAAAQQ 396 (575)
Q Consensus 355 ----~~~fv-------------~v--~~-------------s~----l~~sg~vGe~-~~~~l-~~lf~~a~~~l~~~~~ 396 (575)
+.++- ++ +. .+ .++..++|.- ....+ ...+......+..+++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~ 132 (337)
T TIGR02030 53 KAVAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANR 132 (337)
T ss_pred ccccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccC
Confidence 22221 00 00 00 0001233331 11111 0011111223445678
Q ss_pred CeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCc
Q 008176 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (575)
Q Consensus 397 ~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~ 470 (575)
++||||||+.+.+. +|+.|+++|+...+.+...|.. . -...++++|++.|..
T Consensus 133 GvL~lDEi~~L~~~--------------~Q~~Ll~~l~~g~~~v~r~G~~-------~-~~~~r~iviat~np~ 184 (337)
T TIGR02030 133 GILYIDEVNLLEDH--------------LVDVLLDVAASGWNVVEREGIS-------I-RHPARFVLVGSGNPE 184 (337)
T ss_pred CEEEecChHhCCHH--------------HHHHHHHHHHhCCeEEEECCEE-------E-EcCCCEEEEeccccc
Confidence 99999999999887 9999999998554333222211 1 122357778887643
No 106
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=4.4e-11 Score=129.12 Aligned_cols=153 Identities=21% Similarity=0.327 Sum_probs=95.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
.|+||+++++.|..++...... . +..... -++.+||+||+|+|||++|+++|+.+.+.
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~-~--------------------~~~~~~-l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARAD-V--------------------AAAGSG-MTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred hccChHHHHHHHHHHHHhcccc-c--------------------cccCCC-CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3899999999999999622110 0 000000 12568899999999999999999877442
Q ss_pred -----------------------EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhc
Q 008176 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (575)
Q Consensus 358 -----------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~ 414 (575)
+..+.... ..++ ...++++++.+..........|++|||+|.+...
T Consensus 64 ~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~----~~i~---i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~---- 132 (394)
T PRK07940 64 DPDEPGCGECRACRTVLAGTHPDVRVVAPEG----LSIG---VDEVRELVTIAARRPSTGRWRIVVIEDADRLTER---- 132 (394)
T ss_pred CCCCCCCCCCHHHHHHhcCCCCCEEEecccc----ccCC---HHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH----
Confidence 11111110 0111 1234555544332222345679999999999877
Q ss_pred ccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhh
Q 008176 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 415 ~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~ 494 (575)
.+++||+.||+. ....+.+++|++...+...++.|. ..+.|+.|..++
T Consensus 133 ----------aanaLLk~LEep--------------------~~~~~fIL~a~~~~~llpTIrSRc--~~i~f~~~~~~~ 180 (394)
T PRK07940 133 ----------AANALLKAVEEP--------------------PPRTVWLLCAPSPEDVLPTIRSRC--RHVALRTPSVEA 180 (394)
T ss_pred ----------HHHHHHHHhhcC--------------------CCCCeEEEEECChHHChHHHHhhC--eEEECCCCCHHH
Confidence 789999999941 112245566666666777777664 477788886665
Q ss_pred h
Q 008176 495 M 495 (575)
Q Consensus 495 ~ 495 (575)
+
T Consensus 181 i 181 (394)
T PRK07940 181 V 181 (394)
T ss_pred H
Confidence 4
No 107
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.23 E-value=5.5e-11 Score=127.78 Aligned_cols=144 Identities=22% Similarity=0.373 Sum_probs=100.8
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHH---
Q 008176 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY--- 353 (575)
Q Consensus 277 ~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~--- 353 (575)
+.+||.+...+.+.+.+.. |. ....+||++|++||||+.+|++|...
T Consensus 78 ~~LIG~~~~~~~~~eqik~-~a-----------------------------p~~~~vLi~GetGtGKel~A~~iH~~s~r 127 (403)
T COG1221 78 DDLIGESPSLQELREQIKA-YA-----------------------------PSGLPVLIIGETGTGKELFARLIHALSAR 127 (403)
T ss_pred hhhhccCHHHHHHHHHHHh-hC-----------------------------CCCCcEEEecCCCccHHHHHHHHHHhhhc
Confidence 3589999999998888852 11 22368999999999999999999743
Q ss_pred -hCCCEEEeccccccccc----cccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHH
Q 008176 354 -VNVPFVIADATTLTQAG----YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQA 428 (575)
Q Consensus 354 -l~~~fv~v~~s~l~~sg----~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~a 428 (575)
.+.||+.+||..+.+.. +.|.. ...++.........++.+.+|+||+|||..+++. .|..
T Consensus 128 ~~~~PFI~~NCa~~~en~~~~eLFG~~-kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~--------------~Q~k 192 (403)
T COG1221 128 RAEAPFIAFNCAAYSENLQEAELFGHE-KGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPE--------------GQEK 192 (403)
T ss_pred ccCCCEEEEEHHHhCcCHHHHHHhccc-cceeecccCCcCchheecCCCEEehhhhhhCCHh--------------HHHH
Confidence 36799999999977522 22322 2222222222223456788999999999999998 9999
Q ss_pred HHHHhhCCeec-ccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHH
Q 008176 429 LLKMLEGTVVN-VPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTIS 477 (575)
Q Consensus 429 LL~~LEg~~v~-vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~ 477 (575)
|+.+||.+++. + +.. .....++++||+++ .++++.+.
T Consensus 193 Ll~~le~g~~~rv--------G~~---~~~~~dVRli~AT~-~~l~~~~~ 230 (403)
T COG1221 193 LLRVLEEGEYRRV--------GGS---QPRPVDVRLICATT-EDLEEAVL 230 (403)
T ss_pred HHHHHHcCceEec--------CCC---CCcCCCceeeeccc-cCHHHHHH
Confidence 99999965543 2 111 22455689999988 45555554
No 108
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=6.4e-11 Score=133.32 Aligned_cols=139 Identities=29% Similarity=0.316 Sum_probs=87.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCcc-EEEEcCCCCChHHHHHHHHHHhCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLARYVNV 356 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~-VLL~GPpGTGKTtLAraLA~~l~~ 356 (575)
+|+||+.+++.|..++.... ..| +||+||+|||||++|+++|+.+++
T Consensus 14 eivGq~~i~~~L~~~i~~~r--------------------------------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDAGR--------------------------------INHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred HhcCcHHHHHHHHHHHHcCC--------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 38999999999999885110 134 689999999999999999988753
Q ss_pred C--------------------------EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHh
Q 008176 357 P--------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (575)
Q Consensus 357 ~--------------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~ 410 (575)
. ++.+++.. ..|. ..++++.+...+........|++|||+|.+...
T Consensus 62 ~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas-----~~gv---d~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~ 133 (584)
T PRK14952 62 AQGPTATPCGVCESCVALAPNGPGSIDVVELDAAS-----HGGV---DDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA 133 (584)
T ss_pred ccCCCCCcccccHHHHHhhcccCCCceEEEecccc-----ccCH---HHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH
Confidence 2 22222211 1121 223333333222222345679999999999876
Q ss_pred hhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecC-CCcChHHHHHhhhcccCCCCCC
Q 008176 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGG-AFVDIEKTISERRQDSSIGFGA 489 (575)
Q Consensus 411 r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tg-n~~dL~~~i~~rr~~~~IgF~~ 489 (575)
.+++||+.||+ ...+++||+++ ....+...++.|. ..+.|..
T Consensus 134 --------------A~NALLK~LEE---------------------pp~~~~fIL~tte~~kll~TI~SRc--~~~~F~~ 176 (584)
T PRK14952 134 --------------GFNALLKIVEE---------------------PPEHLIFIFATTEPEKVLPTIRSRT--HHYPFRL 176 (584)
T ss_pred --------------HHHHHHHHHhc---------------------CCCCeEEEEEeCChHhhHHHHHHhc--eEEEeeC
Confidence 89999999994 12345555444 3333556666553 3555655
Q ss_pred chhh
Q 008176 490 PVRA 493 (575)
Q Consensus 490 p~~e 493 (575)
...+
T Consensus 177 l~~~ 180 (584)
T PRK14952 177 LPPR 180 (584)
T ss_pred CCHH
Confidence 5443
No 109
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=6.9e-11 Score=133.69 Aligned_cols=107 Identities=28% Similarity=0.429 Sum_probs=71.5
Q ss_pred hcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 275 Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
|++ |+||+.+++.|..++..... ++.+||+||+|||||++|+++|+.+
T Consensus 15 f~d-viGQe~vv~~L~~~l~~~rl-------------------------------~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 15 FSE-MVGQEHVVQALTNALTQQRL-------------------------------HHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred HHH-hcCcHHHHHHHHHHHHcCCC-------------------------------CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 444 78999999999998851110 1346899999999999999999988
Q ss_pred CCC-----------------------------EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHh
Q 008176 355 NVP-----------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (575)
Q Consensus 355 ~~~-----------------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID 405 (575)
++. ++.++... -.| ...++++.+...+........|++|||+|
T Consensus 63 nC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas-----~~~---Vd~iReli~~~~~~p~~g~~KV~IIDEvh 134 (618)
T PRK14951 63 NCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAAS-----NRG---VDEVQQLLEQAVYKPVQGRFKVFMIDEVH 134 (618)
T ss_pred cCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCccc-----ccC---HHHHHHHHHHHHhCcccCCceEEEEEChh
Confidence 641 22222211 111 12344444433222222345799999999
Q ss_pred hhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 406 KITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 406 ~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+... .+|+||+.||+
T Consensus 135 ~Ls~~--------------a~NaLLKtLEE 150 (618)
T PRK14951 135 MLTNT--------------AFNAMLKTLEE 150 (618)
T ss_pred hCCHH--------------HHHHHHHhccc
Confidence 99877 79999999994
No 110
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.21 E-value=7.6e-11 Score=138.48 Aligned_cols=100 Identities=30% Similarity=0.402 Sum_probs=73.9
Q ss_pred hhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
.++. |+|+++.++.+.+.+... .+.+++|+||||||||++|+++|..
T Consensus 171 ~~~~-~igr~~ei~~~~~~l~r~--------------------------------~~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 171 KLDP-VIGRDEEIRRTIQVLSRR--------------------------------TKNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CCCc-CCCcHHHHHHHHHHHhcC--------------------------------CCCceEEEcCCCCCHHHHHHHHHHH
Confidence 4554 899999988888877511 1268899999999999999999987
Q ss_pred h----------CCCEEEecccccc-ccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHh
Q 008176 354 V----------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (575)
Q Consensus 354 l----------~~~fv~v~~s~l~-~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~ 410 (575)
+ +.+++.++...+. ...|.|+. +..+...+..... ...+.||||||||.+...
T Consensus 218 i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~-e~~l~~~l~~~~~---~~~~~ILfIDEih~l~~~ 281 (852)
T TIGR03346 218 IVNGDVPESLKNKRLLALDMGALIAGAKYRGEF-EERLKAVLNEVTK---SEGQIILFIDELHTLVGA 281 (852)
T ss_pred HhccCCchhhcCCeEEEeeHHHHhhcchhhhhH-HHHHHHHHHHHHh---cCCCeEEEeccHHHhhcC
Confidence 5 5677878777653 34577764 6667777665321 135789999999999764
No 111
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.1e-10 Score=125.63 Aligned_cols=133 Identities=20% Similarity=0.264 Sum_probs=94.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~ 410 (575)
++.||+||||||||+++-|+|++++.+++.++.+++... .-++.++... ...+||+|.+||.....
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n--------~dLr~LL~~t------~~kSIivIEDIDcs~~l 301 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD--------SDLRHLLLAT------PNKSILLIEDIDCSFDL 301 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--------HHHHHHHHhC------CCCcEEEEeeccccccc
Confidence 789999999999999999999999999999988776532 2266666554 36789999999998664
Q ss_pred hhhcccC--CCc--chHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHH-HhhhcccC
Q 008176 411 AESLNIS--RDV--SGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTI-SERRQDSS 484 (575)
Q Consensus 411 r~~~~~~--~~~--~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i-~~rr~~~~ 484 (575)
++..... ... ....+.+.||..+||---. ...-.++|+|||..+ ||.++ +++|+|..
T Consensus 302 ~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSs-----------------cg~ERIivFTTNh~EkLDPALlRpGRmDmh 364 (457)
T KOG0743|consen 302 RERRKKKKENFEGDLSRVTLSGLLNFLDGLWSS-----------------CGDERIIVFTTNHKEKLDPALLRPGRMDMH 364 (457)
T ss_pred ccccccccccccCCcceeehHHhhhhhcccccc-----------------CCCceEEEEecCChhhcCHhhcCCCcceeE
Confidence 4332211 111 1223688899999972111 112356678888887 76654 55689999
Q ss_pred CCCCCchhhh
Q 008176 485 IGFGAPVRAN 494 (575)
Q Consensus 485 IgF~~p~~e~ 494 (575)
|.++...-+.
T Consensus 365 I~mgyCtf~~ 374 (457)
T KOG0743|consen 365 IYMGYCTFEA 374 (457)
T ss_pred EEcCCCCHHH
Confidence 8888766554
No 112
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.21 E-value=5.5e-11 Score=132.79 Aligned_cols=150 Identities=20% Similarity=0.317 Sum_probs=96.1
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
.++|++.+++.+.+.+...- ....+|||+|++||||+++|++|....
T Consensus 197 ~liG~s~~~~~~~~~~~~~a------------------------------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~ 246 (534)
T TIGR01817 197 GIIGKSPAMRQVVDQARVVA------------------------------RSNSTVLLRGESGTGKELIAKAIHYLSPRA 246 (534)
T ss_pred ceEECCHHHHHHHHHHHHHh------------------------------CcCCCEEEECCCCccHHHHHHHHHHhCCCC
Confidence 57999999998888775111 123689999999999999999999875
Q ss_pred CCCEEEeccccccccc----cccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHH
Q 008176 355 NVPFVIADATTLTQAG----YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (575)
Q Consensus 355 ~~~fv~v~~s~l~~sg----~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL 430 (575)
+.+|+.++|..+.+.. +.|.. ...+..........+..+.+++||||||+.++.. +|..|+
T Consensus 247 ~~pfv~i~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~--------------~Q~~Ll 311 (534)
T TIGR01817 247 KRPFVKVNCAALSETLLESELFGHE-KGAFTGAIAQRKGRFELADGGTLFLDEIGEISPA--------------FQAKLL 311 (534)
T ss_pred CCCeEEeecCCCCHHHHHHHHcCCC-CCccCCCCcCCCCcccccCCCeEEEechhhCCHH--------------HHHHHH
Confidence 5799999998865310 11111 0000000000011234467899999999999988 999999
Q ss_pred HHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhccc
Q 008176 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (575)
Q Consensus 431 ~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~ 483 (575)
.+++...+.- .+... . ...++.+|++++ .++++.+..+.|+.
T Consensus 312 ~~l~~~~~~~-------~~~~~--~-~~~~~riI~~s~-~~l~~~~~~~~f~~ 353 (534)
T TIGR01817 312 RVLQEGEFER-------VGGNR--T-LKVDVRLVAATN-RDLEEAVAKGEFRA 353 (534)
T ss_pred HHHhcCcEEE-------CCCCc--e-EeecEEEEEeCC-CCHHHHHHcCCCCH
Confidence 9998533221 01111 1 123578888876 45666666555543
No 113
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=1.3e-10 Score=129.09 Aligned_cols=105 Identities=32% Similarity=0.394 Sum_probs=72.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+++||+.+++.|..++.... -++++||+||+|||||++|+++|+.+++.
T Consensus 22 dliGq~~vv~~L~~ai~~~r-------------------------------i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDR-------------------------------LAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 37999999999998775110 12678999999999999999999988642
Q ss_pred E----------------------------EEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhH
Q 008176 358 F----------------------------VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (575)
Q Consensus 358 f----------------------------v~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~ 409 (575)
. +.+++.. -.| ...+++.++.+..........|++|||+|.+..
T Consensus 71 ~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas-----~~~---vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~ 142 (507)
T PRK06645 71 ALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAAS-----KTS---VDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK 142 (507)
T ss_pred cccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccC-----CCC---HHHHHHHHHHHHhccccCCcEEEEEEChhhcCH
Confidence 1 1111110 011 233455555444332334677999999999976
Q ss_pred hhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 410 KAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 410 ~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
. .+++|++.||+
T Consensus 143 ~--------------a~naLLk~LEe 154 (507)
T PRK06645 143 G--------------AFNALLKTLEE 154 (507)
T ss_pred H--------------HHHHHHHHHhh
Confidence 5 79999999993
No 114
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=2.2e-10 Score=126.54 Aligned_cols=107 Identities=27% Similarity=0.343 Sum_probs=74.3
Q ss_pred hcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 275 Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
+++ |+||+.+++.|..++.... -++++||+||+|+||||+|+.+|+.+
T Consensus 12 f~d-liGQe~vv~~L~~a~~~~r-------------------------------i~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 12 FKD-LVGQDVLVRILRNAFTLNK-------------------------------IPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred HHH-hcCcHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCccHHHHHHHHHHHH
Confidence 444 8999999999988774110 12579999999999999999999876
Q ss_pred CC------------------------CEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHh
Q 008176 355 NV------------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (575)
Q Consensus 355 ~~------------------------~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~ 410 (575)
++ +++++++++- .|. ..++++.+.+.+........|++|||+|.+...
T Consensus 60 nC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~-----~~v---ddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~ 131 (491)
T PRK14964 60 NCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASN-----TSV---DDIKVILENSCYLPISSKFKVYIIDEVHMLSNS 131 (491)
T ss_pred cCcCCCCCCCccccHHHHHHhccCCCCEEEEecccC-----CCH---HHHHHHHHHHHhccccCCceEEEEeChHhCCHH
Confidence 32 2344444321 121 234444444433223356779999999999876
Q ss_pred hhhcccCCCcchHHHHHHHHHHhhC
Q 008176 411 AESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 411 r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+++||+.||+
T Consensus 132 --------------A~NaLLK~LEe 142 (491)
T PRK14964 132 --------------AFNALLKTLEE 142 (491)
T ss_pred --------------HHHHHHHHHhC
Confidence 89999999994
No 115
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.21 E-value=6.4e-11 Score=134.96 Aligned_cols=137 Identities=26% Similarity=0.337 Sum_probs=87.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
.|+||+.+|+.|..+..+. ..++|||.|++|||||++|++|++.+
T Consensus 5 ~ivGq~~~~~al~~~av~~--------------------------------~~g~vli~G~~GtgKs~lar~l~~~lp~~ 52 (633)
T TIGR02442 5 AIVGQEDLKLALLLNAVDP--------------------------------RIGGVLIRGEKGTAKSTAARGLAALLPPI 52 (633)
T ss_pred hhcChHHHHHHHHHHhhCC--------------------------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCc
Confidence 4899999999887666411 12689999999999999999999887
Q ss_pred --------------------------------CCCEEEeccccccccccccc-hhhhHHHH-HhhhchhhHHhhccCeEe
Q 008176 355 --------------------------------NVPFVIADATTLTQAGYVGE-DVESILYK-LLTVSDYNVAAAQQGIVY 400 (575)
Q Consensus 355 --------------------------------~~~fv~v~~s~l~~sg~vGe-~~~~~l~~-lf~~a~~~l~~~~~~ILf 400 (575)
..+|+.+.++... ..++|. ++...+.. ........+..++++|||
T Consensus 53 ~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~-~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~ 131 (633)
T TIGR02442 53 DVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATE-DRVVGSLDIERALREGEKAFQPGLLAEAHRGILY 131 (633)
T ss_pred eeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcH-HHcCCcccHHHHhhcCCeeecCcceeecCCCeEE
Confidence 2456655544322 223343 11111110 001112233456789999
Q ss_pred ehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCC
Q 008176 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (575)
Q Consensus 401 IDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~ 469 (575)
||||+.+.+. +|+.|++.|+.+.+.+...|. . .....++++|+|.|.
T Consensus 132 lDEi~~l~~~--------------~q~~Ll~~le~g~~~v~r~g~-------~-~~~~~~~~lIat~np 178 (633)
T TIGR02442 132 IDEVNLLDDH--------------LVDVLLDAAAMGVNRVEREGL-------S-VSHPARFVLIGTMNP 178 (633)
T ss_pred eChhhhCCHH--------------HHHHHHHHHhcCCEEEEECCc-------e-eeecCCeEEEEecCC
Confidence 9999999988 999999999965443321221 1 122356788888774
No 116
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.20 E-value=1.4e-10 Score=129.45 Aligned_cols=148 Identities=23% Similarity=0.357 Sum_probs=100.9
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHH-----
Q 008176 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY----- 353 (575)
Q Consensus 279 VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~----- 353 (575)
++|++.+++.+...+.. +. ....+|||+|++||||+++|++|...
T Consensus 221 iiG~S~~m~~~~~~i~~-~A-----------------------------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~ 270 (538)
T PRK15424 221 LLGQSPQMEQVRQTILL-YA-----------------------------RSSAAVLIQGETGTGKELAAQAIHREYFARH 270 (538)
T ss_pred eeeCCHHHHHHHHHHHH-Hh-----------------------------CCCCcEEEECCCCCCHHHHHHHHHHhhcccc
Confidence 79999999998888741 11 12368999999999999999999887
Q ss_pred ------hCCCEEEecccccccc----ccccchhhhHHHHHhhhc-----hhhHHhhccCeEeehhHhhhhHhhhhcccCC
Q 008176 354 ------VNVPFVIADATTLTQA----GYVGEDVESILYKLLTVS-----DYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (575)
Q Consensus 354 ------l~~~fv~v~~s~l~~s----g~vGe~~~~~l~~lf~~a-----~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~ 418 (575)
.+.||+.++|..+.+. .+.|+. . ..|..+ ...+..+++++||||||+.++..
T Consensus 271 ~~~S~r~~~pfv~inCaal~e~lleseLFG~~-~----gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~-------- 337 (538)
T PRK15424 271 DARQGKKSHPFVAVNCGAIAESLLEAELFGYE-E----GAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP-------- 337 (538)
T ss_pred cccCccCCCCeEEeecccCChhhHHHHhcCCc-c----ccccCccccccCCchhccCCCEEEEcChHhCCHH--------
Confidence 3679999999987532 111211 0 111111 12344568899999999999988
Q ss_pred CcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCC
Q 008176 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (575)
Q Consensus 419 ~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~Ig 486 (575)
+|..|+++|+++.+.- .+.... ...++.+|++++ .++++.+.+++|+..+.
T Consensus 338 ------~Q~kLl~~L~e~~~~r-------~G~~~~---~~~dvRiIaat~-~~L~~~v~~g~Fr~dL~ 388 (538)
T PRK15424 338 ------LQTRLLRVLEEKEVTR-------VGGHQP---VPVDVRVISATH-CDLEEDVRQGRFRRDLF 388 (538)
T ss_pred ------HHHHHHhhhhcCeEEe-------cCCCce---eccceEEEEecC-CCHHHHHhcccchHHHH
Confidence 9999999998554321 111111 133578899887 46777777766654433
No 117
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=1.2e-10 Score=130.09 Aligned_cols=105 Identities=30% Similarity=0.381 Sum_probs=70.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCC-
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~- 356 (575)
+|+||+.+++.|..++.... .++.+||+||+|||||++|+++|+.+++
T Consensus 17 diiGq~~~v~~L~~~i~~~r-------------------------------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~ 65 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQK-------------------------------VHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 (546)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 38999999999998885110 0134789999999999999999998753
Q ss_pred -----------------------CEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 357 -----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 357 -----------------------~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
.++.+++.. ..|.+ .++++..............|++|||+|++...
T Consensus 66 ~~~~~~pCg~C~sC~~i~~~~~~dlieidaas-----~~gvd---~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~--- 134 (546)
T PRK14957 66 TGVTAEPCNKCENCVAINNNSFIDLIEIDAAS-----RTGVE---ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ--- 134 (546)
T ss_pred CCCCCCCCcccHHHHHHhcCCCCceEEeeccc-----ccCHH---HHHHHHHHHHhhhhcCCcEEEEEechhhccHH---
Confidence 222222211 11211 22333333222222345679999999999876
Q ss_pred cccCCCcchHHHHHHHHHHhhC
Q 008176 414 LNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+++||+.||+
T Consensus 135 -----------a~naLLK~LEe 145 (546)
T PRK14957 135 -----------SFNALLKTLEE 145 (546)
T ss_pred -----------HHHHHHHHHhc
Confidence 89999999994
No 118
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=1.1e-10 Score=131.62 Aligned_cols=105 Identities=30% Similarity=0.373 Sum_probs=69.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+||+.+++.|..++..... ...+||+||+|||||++|+++|+.+.+.
T Consensus 17 dIiGQe~v~~~L~~ai~~~ri-------------------------------~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 17 EVAGQETVKAILSRAAQENRV-------------------------------APAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred HhcCCHHHHHHHHHHHHcCCC-------------------------------CceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 379999999999988851110 2578899999999999999999988642
Q ss_pred ------------------------EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 358 ------------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
++++++.. ..+.+..+.+.+.+... .......||+|||+|.+...
T Consensus 66 ~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~-----~~~Id~iR~L~~~~~~~---p~~g~~kVIIIDEad~Lt~~--- 134 (624)
T PRK14959 66 TAPTGEPCNTCEQCRKVTQGMHVDVVEIDGAS-----NRGIDDAKRLKEAIGYA---PMEGRYKVFIIDEAHMLTRE--- 134 (624)
T ss_pred CCCCCCCCcccHHHHHHhcCCCCceEEEeccc-----ccCHHHHHHHHHHHHhh---hhcCCceEEEEEChHhCCHH---
Confidence 23332211 11111112222222211 12245679999999999876
Q ss_pred cccCCCcchHHHHHHHHHHhhC
Q 008176 414 LNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+++|++.||+
T Consensus 135 -----------a~naLLk~LEE 145 (624)
T PRK14959 135 -----------AFNALLKTLEE 145 (624)
T ss_pred -----------HHHHHHHHhhc
Confidence 79999999993
No 119
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.20 E-value=2.3e-10 Score=120.51 Aligned_cols=148 Identities=18% Similarity=0.289 Sum_probs=95.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
.++|.+.+.+.+.+.+... .....+|||+|++||||+++|++|....
T Consensus 7 ~liG~S~~~~~~~~~i~~~------------------------------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~ 56 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRL------------------------------APLDKPVLIIGERGTGKELIASRLHYLSSRW 56 (326)
T ss_pred ccEECCHHHHHHHHHHHHH------------------------------hCCCCCEEEECCCCCcHHHHHHHHHHhCCcc
Confidence 4799999999998888511 1123689999999999999999998665
Q ss_pred CCCEEEecccccccc----ccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHH
Q 008176 355 NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (575)
Q Consensus 355 ~~~fv~v~~s~l~~s----g~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL 430 (575)
+.+|+.++|..+.+. .+.|.. ...+..........+..+.+++||||||+.+... +|..|+
T Consensus 57 ~~pfv~v~c~~~~~~~~~~~lfg~~-~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~--------------~Q~~L~ 121 (326)
T PRK11608 57 QGPFISLNCAALNENLLDSELFGHE-AGAFTGAQKRHPGRFERADGGTLFLDELATAPML--------------VQEKLL 121 (326)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcccc-ccccCCcccccCCchhccCCCeEEeCChhhCCHH--------------HHHHHH
Confidence 478999999986521 111211 0000000000011234567899999999999988 999999
Q ss_pred HHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhc
Q 008176 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQ 481 (575)
Q Consensus 431 ~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~ 481 (575)
.+|+...+.- .+... . ...++.+|++++ .++++.+..+.|
T Consensus 122 ~~l~~~~~~~-------~g~~~--~-~~~~~RiI~~s~-~~l~~l~~~g~f 161 (326)
T PRK11608 122 RVIEYGELER-------VGGSQ--P-LQVNVRLVCATN-ADLPAMVAEGKF 161 (326)
T ss_pred HHHhcCcEEe-------CCCCc--e-eeccEEEEEeCc-hhHHHHHHcCCc
Confidence 9998433210 01100 1 123578888876 456666665554
No 120
>PHA02244 ATPase-like protein
Probab=99.18 E-value=4.3e-10 Score=119.84 Aligned_cols=111 Identities=19% Similarity=0.299 Sum_probs=73.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~ 410 (575)
.+|||+||||||||++|+++|..++.+++.++... ......|.. .. ...+.......+...+++|+|||++.+.++
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~-d~~~L~G~i-~~--~g~~~dgpLl~A~~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM-DEFELKGFI-DA--NGKFHETPFYEAFKKGGLFFIDEIDASIPE 195 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh-HHHhhcccc-cc--cccccchHHHHHhhcCCEEEEeCcCcCCHH
Confidence 58999999999999999999999999999887431 111111110 00 001111111122357899999999999987
Q ss_pred hhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCC
Q 008176 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (575)
Q Consensus 411 r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~ 469 (575)
++..|+.++++..+..+ +.+ .....++.+|+|+|.
T Consensus 196 --------------vq~~L~~lLd~r~l~l~--g~~--------i~~h~~FRlIATsN~ 230 (383)
T PHA02244 196 --------------ALIIINSAIANKFFDFA--DER--------VTAHEDFRVISAGNT 230 (383)
T ss_pred --------------HHHHHHHHhccCeEEec--CcE--------EecCCCEEEEEeeCC
Confidence 89999999986654432 111 223356788888875
No 121
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.18 E-value=1.7e-10 Score=128.37 Aligned_cols=153 Identities=20% Similarity=0.310 Sum_probs=98.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
.++|++.+++.+.+.+.. +...+.+|||+|++||||+++|++|....
T Consensus 188 ~iig~s~~~~~~~~~i~~------------------------------~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~ 237 (509)
T PRK05022 188 EMIGQSPAMQQLKKEIEV------------------------------VAASDLNVLILGETGVGKELVARAIHAASPRA 237 (509)
T ss_pred ceeecCHHHHHHHHHHHH------------------------------HhCCCCcEEEECCCCccHHHHHHHHHHhCCcC
Confidence 478888888888877751 11224689999999999999999998775
Q ss_pred CCCEEEecccccccc----ccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHH
Q 008176 355 NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (575)
Q Consensus 355 ~~~fv~v~~s~l~~s----g~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL 430 (575)
+.+|+.++|..+.+. .+.|.. ...+..........+..+.+++||||||+.++.. +|..|+
T Consensus 238 ~~p~v~v~c~~~~~~~~e~~lfG~~-~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~--------------~Q~~Ll 302 (509)
T PRK05022 238 DKPLVYLNCAALPESLAESELFGHV-KGAFTGAISNRSGKFELADGGTLFLDEIGELPLA--------------LQAKLL 302 (509)
T ss_pred CCCeEEEEcccCChHHHHHHhcCcc-ccccCCCcccCCcchhhcCCCEEEecChhhCCHH--------------HHHHHH
Confidence 579999999987531 111111 0000000000111244567899999999999987 999999
Q ss_pred HHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCC
Q 008176 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (575)
Q Consensus 431 ~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~Ig 486 (575)
++++...+.- .+... ....++.+|++++ .++++.+..+.|+..+.
T Consensus 303 ~~l~~~~~~~-------~g~~~---~~~~~~RiI~~t~-~~l~~~~~~~~f~~dL~ 347 (509)
T PRK05022 303 RVLQYGEIQR-------VGSDR---SLRVDVRVIAATN-RDLREEVRAGRFRADLY 347 (509)
T ss_pred HHHhcCCEee-------CCCCc---ceecceEEEEecC-CCHHHHHHcCCccHHHH
Confidence 9998543211 01111 1123578888887 45777776665544443
No 122
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.15 E-value=1.5e-10 Score=128.33 Aligned_cols=184 Identities=21% Similarity=0.297 Sum_probs=106.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCC-
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~- 356 (575)
+|+||+.+++.+..++. ...+++|+||||||||++|++++..+..
T Consensus 193 dv~Gq~~~~~al~~aa~----------------------------------~g~~vlliG~pGsGKTtlar~l~~llp~~ 238 (499)
T TIGR00368 193 DIKGQQHAKRALEIAAA----------------------------------GGHNLLLFGPPGSGKTMLASRLQGILPPL 238 (499)
T ss_pred HhcCcHHHHhhhhhhcc----------------------------------CCCEEEEEecCCCCHHHHHHHHhcccCCC
Confidence 48999999888776652 1267899999999999999999976511
Q ss_pred -CEEEeccccccccccccchh------hhH---------HHHHhh----hchhhHHhhccCeEeehhHhhhhHhhhhccc
Q 008176 357 -PFVIADATTLTQAGYVGEDV------ESI---------LYKLLT----VSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (575)
Q Consensus 357 -~fv~v~~s~l~~sg~vGe~~------~~~---------l~~lf~----~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~ 416 (575)
.-..+..+.+.. +.|... ... ...++. .....+..++++||||||++.+.+.
T Consensus 239 ~~~~~le~~~i~s--~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~------ 310 (499)
T TIGR00368 239 TNEEAIETARIWS--LVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRS------ 310 (499)
T ss_pred CCcEEEecccccc--chhhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHH------
Confidence 001112211110 000000 000 000000 0112345678899999999999877
Q ss_pred CCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhhc
Q 008176 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (575)
Q Consensus 417 ~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~~ 496 (575)
+|+.|++.||.+.+.+...+.. .....++.+|+++|.-. -+. |+.+....
T Consensus 311 --------~~~~L~~~LE~~~v~i~r~g~~--------~~~pa~frlIaa~Npcp------cg~------~~~~~~~c-- 360 (499)
T TIGR00368 311 --------VLDALREPIEDGSISISRASAK--------IFYPARFQLVAAMNPCP------CGH------YGGKNTHC-- 360 (499)
T ss_pred --------HHHHHHHHHHcCcEEEEecCcc--------eeccCCeEEEEecCCcc------cCc------CCCCcccc--
Confidence 9999999999766654322211 22345788888888421 001 11111111
Q ss_pred cCCCChHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHH
Q 008176 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (575)
Q Consensus 497 ~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~ 546 (575)
.+.. .++.+++. .+...+++||+..+.+.+++.+++.
T Consensus 361 ---~c~~---~~~~~y~~-------~is~pllDR~dl~~~~~~~~~~~l~ 397 (499)
T TIGR00368 361 ---RCSP---QQISRYWN-------KLSGPFLDRIDLSVEVPLLPPEKLL 397 (499)
T ss_pred ---cCCH---HHHHHHhh-------hccHhHHhhCCEEEEEcCCCHHHHh
Confidence 0111 12222222 2668899999999999998777663
No 123
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=3.5e-10 Score=125.67 Aligned_cols=107 Identities=30% Similarity=0.333 Sum_probs=68.9
Q ss_pred hcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 275 Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
|++ |+||+.+++.|..++.... .++.+||+|||||||||+|+++|+.+
T Consensus 13 ~~d-vvGq~~v~~~L~~~i~~~~-------------------------------l~ha~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 13 FDE-VVGQEHVKEVLLAALRQGR-------------------------------LGHAYLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred HHH-hcChHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 444 8999999999998885110 01335899999999999999999887
Q ss_pred CCC-----------------------EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhh
Q 008176 355 NVP-----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (575)
Q Consensus 355 ~~~-----------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r 411 (575)
.+. ++.++.+. ..+ ...++++..............||+|||+|.+...
T Consensus 61 ~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~-----~~~---vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~- 131 (504)
T PRK14963 61 NCSGEDPKPCGECESCLAVRRGAHPDVLEIDAAS-----NNS---VEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKS- 131 (504)
T ss_pred hccCCCCCCCCcChhhHHHhcCCCCceEEecccc-----cCC---HHHHHHHHHHHhhccccCCCeEEEEECccccCHH-
Confidence 431 23333221 111 1223333222211111245679999999988655
Q ss_pred hhcccCCCcchHHHHHHHHHHhhC
Q 008176 412 ESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 412 ~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+++|++.|+.
T Consensus 132 -------------a~naLLk~LEe 142 (504)
T PRK14963 132 -------------AFNALLKTLEE 142 (504)
T ss_pred -------------HHHHHHHHHHh
Confidence 79999999983
No 124
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.15 E-value=4.1e-10 Score=125.71 Aligned_cols=147 Identities=20% Similarity=0.380 Sum_probs=98.4
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---C
Q 008176 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (575)
Q Consensus 279 VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l---~ 355 (575)
++|++.+++.+.+.+.. + .....+|||.|++||||+++|++|.... +
T Consensus 214 iiG~S~~m~~~~~~i~~-~-----------------------------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~ 263 (526)
T TIGR02329 214 LLGASAPMEQVRALVRL-Y-----------------------------ARSDATVLILGESGTGKELVAQAIHQLSGRRD 263 (526)
T ss_pred eeeCCHHHHHHHHHHHH-H-----------------------------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCC
Confidence 79999988888887741 1 1123689999999999999999998764 6
Q ss_pred CCEEEecccccccc----ccccchhhhHHHHHhhhc-----hhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHH
Q 008176 356 VPFVIADATTLTQA----GYVGEDVESILYKLLTVS-----DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (575)
Q Consensus 356 ~~fv~v~~s~l~~s----g~vGe~~~~~l~~lf~~a-----~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq 426 (575)
.||+.++|..+.+. .+.|+. . ..|..+ ...+..+++++||||||+.++.. +|
T Consensus 264 ~pfv~inC~~l~e~lleseLFG~~-~----gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~--------------~Q 324 (526)
T TIGR02329 264 FPFVAINCGAIAESLLEAELFGYE-E----GAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLP--------------LQ 324 (526)
T ss_pred CCEEEeccccCChhHHHHHhcCCc-c----cccccccccccccchhhcCCceEEecChHhCCHH--------------HH
Confidence 79999999887531 111211 0 111111 11234567899999999999988 99
Q ss_pred HHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCC
Q 008176 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (575)
Q Consensus 427 ~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~I 485 (575)
..|+++|++..+.- .+.... ...++.+|++++ .++.+.+..+.|+..+
T Consensus 325 ~~Ll~~L~~~~~~r-------~g~~~~---~~~dvRiIaat~-~~l~~~v~~g~fr~dL 372 (526)
T TIGR02329 325 TRLLRVLEEREVVR-------VGGTEP---VPVDVRVVAATH-CALTTAVQQGRFRRDL 372 (526)
T ss_pred HHHHHHHhcCcEEe-------cCCCce---eeecceEEeccC-CCHHHHhhhcchhHHH
Confidence 99999998544321 111111 123578888887 4677777666655433
No 125
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.15 E-value=5.6e-10 Score=115.89 Aligned_cols=142 Identities=21% Similarity=0.293 Sum_probs=87.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+||+++++.+...+.... .+..+||+||||+|||++|+++++.++.+
T Consensus 22 ~~~~~~~~~~~l~~~~~~~~-------------------------------~~~~lll~G~~G~GKT~la~~l~~~~~~~ 70 (316)
T PHA02544 22 ECILPAADKETFKSIVKKGR-------------------------------IPNMLLHSPSPGTGKTTVAKALCNEVGAE 70 (316)
T ss_pred HhcCcHHHHHHHHHHHhcCC-------------------------------CCeEEEeeCcCCCCHHHHHHHHHHHhCcc
Confidence 37999999999988874100 11344569999999999999999999888
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCe
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~ 437 (575)
++.+++++ .. +.. ....+........ ....+.||+|||+|.+... ..++.|...|+..
T Consensus 71 ~~~i~~~~-~~---~~~-i~~~l~~~~~~~~---~~~~~~vliiDe~d~l~~~-------------~~~~~L~~~le~~- 128 (316)
T PHA02544 71 VLFVNGSD-CR---IDF-VRNRLTRFASTVS---LTGGGKVIIIDEFDRLGLA-------------DAQRHLRSFMEAY- 128 (316)
T ss_pred ceEeccCc-cc---HHH-HHHHHHHHHHhhc---ccCCCeEEEEECcccccCH-------------HHHHHHHHHHHhc-
Confidence 88888876 21 110 0111111111110 0135679999999988322 1677888888831
Q ss_pred ecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHhhhcccCCCCCCchhhh
Q 008176 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 438 v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~rr~~~~IgF~~p~~e~ 494 (575)
..++.+|++++..+ +.+.++.|. ..+.|+.|..+.
T Consensus 129 --------------------~~~~~~Ilt~n~~~~l~~~l~sR~--~~i~~~~p~~~~ 164 (316)
T PHA02544 129 --------------------SKNCSFIITANNKNGIIEPLRSRC--RVIDFGVPTKEE 164 (316)
T ss_pred --------------------CCCceEEEEcCChhhchHHHHhhc--eEEEeCCCCHHH
Confidence 12345566665443 555565544 256666665443
No 126
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.14 E-value=1.4e-10 Score=129.04 Aligned_cols=158 Identities=17% Similarity=0.257 Sum_probs=92.2
Q ss_pred HHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHH
Q 008176 270 EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKT 349 (575)
Q Consensus 270 el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAra 349 (575)
.+...+...|.|++.+|+.+..++..... .. .-++..+ ....|+||+|+||||||++|++
T Consensus 196 ~l~~si~p~i~G~~~~k~~l~l~l~gg~~-------~~------------~~~~~~~-r~~~~vLL~G~pGtGKs~lar~ 255 (509)
T smart00350 196 RLSRSLAPSIYGHEDIKKAILLLLFGGVH-------KN------------LPDGMKI-RGDINILLLGDPGTAKSQLLKY 255 (509)
T ss_pred HHHHhhCccccCcHHHHHHHHHHHhCCCc-------cc------------cCCCccc-cccceEEEeCCCChhHHHHHHH
Confidence 35667777899999999988877741100 00 0011111 1235999999999999999999
Q ss_pred HHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHH
Q 008176 350 LARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (575)
Q Consensus 350 LA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aL 429 (575)
+++......+ +.+......++.+..........+......+..+++++++|||++++.+. .|+.|
T Consensus 256 l~~~~~r~~~-~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~--------------~q~~L 320 (509)
T smart00350 256 VEKTAPRAVY-TTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDS--------------DRTAI 320 (509)
T ss_pred HHHHcCcceE-cCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhhCCHH--------------HHHHH
Confidence 9998754322 11110010111111000000000111112233467899999999999887 89999
Q ss_pred HHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCc
Q 008176 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (575)
Q Consensus 430 L~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~ 470 (575)
+++||...+++...|... ....++.+|+|+|..
T Consensus 321 ~e~me~~~i~i~k~G~~~--------~l~~~~~viAa~NP~ 353 (509)
T smart00350 321 HEAMEQQTISIAKAGITT--------TLNARCSVLAAANPI 353 (509)
T ss_pred HHHHhcCEEEEEeCCEEE--------EecCCcEEEEEeCCC
Confidence 999997777664333221 123457788888853
No 127
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=7.8e-11 Score=127.68 Aligned_cols=183 Identities=22% Similarity=0.338 Sum_probs=107.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC--
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~-- 355 (575)
+|+||+.||+.+..+.. ..+|+||+||||||||++|+.+...+-
T Consensus 180 DV~GQ~~AKrAleiAAA----------------------------------GgHnLl~~GpPGtGKTmla~Rl~~lLPpl 225 (490)
T COG0606 180 DVKGQEQAKRALEIAAA----------------------------------GGHNLLLVGPPGTGKTMLASRLPGLLPPL 225 (490)
T ss_pred hhcCcHHHHHHHHHHHh----------------------------------cCCcEEEecCCCCchHHhhhhhcccCCCC
Confidence 59999999999998774 237899999999999999999986551
Q ss_pred --CCEE------Eecccccc------cccc--ccchhhhHHHHHhh----hchhhHHhhccCeEeehhHhhhhHhhhhcc
Q 008176 356 --VPFV------IADATTLT------QAGY--VGEDVESILYKLLT----VSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (575)
Q Consensus 356 --~~fv------~v~~s~l~------~sg~--vGe~~~~~l~~lf~----~a~~~l~~~~~~ILfIDEID~l~~~r~~~~ 415 (575)
...+ .++..... ..-+ -+++ .....+.. -....+..+++|||||||+-.+..+
T Consensus 226 s~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHHs--aS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~----- 298 (490)
T COG0606 226 SIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHS--ASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRS----- 298 (490)
T ss_pred ChHHHHHHHHHhhhcccccccCccceeCCccCCCcc--chHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHH-----
Confidence 0000 01100000 0000 0010 00111111 1122456689999999998887765
Q ss_pred cCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhh
Q 008176 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (575)
Q Consensus 416 ~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~ 495 (575)
+++.|.+-||.+.+.| .+....+.-..++.+|++.|.- .-..+..+....
T Consensus 299 ---------iLe~LR~PLE~g~i~I--------sRa~~~v~ypa~Fqlv~AmNpc------------pcG~~~~~~~~C- 348 (490)
T COG0606 299 ---------ILEALREPLENGKIII--------SRAGSKVTYPARFQLVAAMNPC------------PCGNLGAPLRRC- 348 (490)
T ss_pred ---------HHHHHhCccccCcEEE--------EEcCCeeEEeeeeEEhhhcCCC------------CccCCCCCCCCc-
Confidence 9999999999655544 1122224445667778887752 223333333222
Q ss_pred ccCCCChHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHH
Q 008176 496 RAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQL 545 (575)
Q Consensus 496 ~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL 545 (575)
.+.......+.+. ++-.|++|+|..++...++..++
T Consensus 349 ----~c~~~~~~~Y~~k----------lSgp~lDRiDl~vev~~~~~~e~ 384 (490)
T COG0606 349 ----PCSPRQIKRYLNK----------LSGPFLDRIDLMVEVPRLSAGEL 384 (490)
T ss_pred ----CCCHHHHHHHHHH----------hhHHHHhhhhheecccCCCHHHh
Confidence 1112222233332 44678899999999988875544
No 128
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=3.4e-10 Score=126.46 Aligned_cols=105 Identities=30% Similarity=0.425 Sum_probs=70.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+||+.+++.|..++..... ++.+||+||+|+|||++|+++|+.+++.
T Consensus 17 divGq~~v~~~L~~~i~~~~~-------------------------------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQRL-------------------------------HHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred HhcCcHHHHHHHHHHHHcCCC-------------------------------CEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 379999999999988851110 1346899999999999999999988642
Q ss_pred ------------------------EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 358 ------------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
++.+++.. -.+ ...++++...+..........|++|||+|.+...
T Consensus 66 ~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~-----~~~---vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~--- 134 (527)
T PRK14969 66 TGVTATPCGVCSACLEIDSGRFVDLIEVDAAS-----NTQ---VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS--- 134 (527)
T ss_pred CCCCCCCCCCCHHHHHHhcCCCCceeEeeccc-----cCC---HHHHHHHHHHHhhCcccCCceEEEEcCcccCCHH---
Confidence 12222110 111 2234444443332222345679999999999876
Q ss_pred cccCCCcchHHHHHHHHHHhhC
Q 008176 414 LNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+++||+.||+
T Consensus 135 -----------a~naLLK~LEe 145 (527)
T PRK14969 135 -----------AFNAMLKTLEE 145 (527)
T ss_pred -----------HHHHHHHHHhC
Confidence 89999999994
No 129
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.12 E-value=4.2e-10 Score=127.88 Aligned_cols=105 Identities=31% Similarity=0.395 Sum_probs=71.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+||+.+++.|..++.... .++.+||+||+|||||++|+++|+.+++.
T Consensus 17 dIIGQe~vv~~L~~ai~~~r-------------------------------l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 17 DLVGQEHVVKALQNALDEGR-------------------------------LHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred HHcCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 38999999999999885110 12567999999999999999999987543
Q ss_pred E------------------------EEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 358 F------------------------VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 358 f------------------------v~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
- +.++... -.| ...+++++.............|++|||+|.+...
T Consensus 66 ~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs-----~~g---Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~--- 134 (709)
T PRK08691 66 NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAAS-----NTG---IDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKS--- 134 (709)
T ss_pred CCCCCCCCcccHHHHHHhccCccceEEEeccc-----cCC---HHHHHHHHHHHHhhhhhCCcEEEEEECccccCHH---
Confidence 1 1111110 011 2234555544332222245679999999998765
Q ss_pred cccCCCcchHHHHHHHHHHhhC
Q 008176 414 LNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+++||+.||+
T Consensus 135 -----------A~NALLKtLEE 145 (709)
T PRK08691 135 -----------AFNAMLKTLEE 145 (709)
T ss_pred -----------HHHHHHHHHHh
Confidence 79999999994
No 130
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=5.3e-10 Score=126.22 Aligned_cols=140 Identities=26% Similarity=0.284 Sum_probs=87.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+||+++++.|..++.... -++.+||+||+|+|||++|+++|+.+++.
T Consensus 17 ~iiGq~~v~~~L~~~i~~~~-------------------------------~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 17 DLTGQEHVSRTLQNAIDTGR-------------------------------VAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred HccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 38999999999998885110 02456899999999999999999987542
Q ss_pred ------------------------EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 358 ------------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
++.+++.. ..|. ..++++.....+........|++|||+|.+...
T Consensus 66 ~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s-----~~~v---~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~--- 134 (576)
T PRK14965 66 QGLTAEPCNVCPPCVEITEGRSVDVFEIDGAS-----NTGV---DDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN--- 134 (576)
T ss_pred CCCCCCCCCccHHHHHHhcCCCCCeeeeeccC-----ccCH---HHHHHHHHHHHhccccCCceEEEEEChhhCCHH---
Confidence 22222211 1111 223444333322222345679999999999876
Q ss_pred cccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCC-CcChHHHHHhhhcccCCCCCCchh
Q 008176 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGA-FVDIEKTISERRQDSSIGFGAPVR 492 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn-~~dL~~~i~~rr~~~~IgF~~p~~ 492 (575)
.+++||+.||+ ...+++||++++ ...+...++.|. ..+.|..+..
T Consensus 135 -----------a~naLLk~LEe---------------------pp~~~~fIl~t~~~~kl~~tI~SRc--~~~~f~~l~~ 180 (576)
T PRK14965 135 -----------AFNALLKTLEE---------------------PPPHVKFIFATTEPHKVPITILSRC--QRFDFRRIPL 180 (576)
T ss_pred -----------HHHHHHHHHHc---------------------CCCCeEEEEEeCChhhhhHHHHHhh--hhhhcCCCCH
Confidence 89999999994 122344554443 334666666553 3556655544
Q ss_pred h
Q 008176 493 A 493 (575)
Q Consensus 493 e 493 (575)
+
T Consensus 181 ~ 181 (576)
T PRK14965 181 Q 181 (576)
T ss_pred H
Confidence 3
No 131
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=5.7e-10 Score=125.53 Aligned_cols=105 Identities=32% Similarity=0.388 Sum_probs=71.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCC-
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~- 356 (575)
+|+||+++++.|..++.... .++.+||+||+|||||++|+.+|+.+++
T Consensus 17 ~viGq~~v~~~L~~~i~~~~-------------------------------~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 17 DVVGQEHITKTLKNAIKQGK-------------------------------ISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred hccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 48999999999999885100 0245789999999999999999988753
Q ss_pred -----------------------CEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 357 -----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 357 -----------------------~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
+++.+++.. -.| ...++++..............|++|||+|.+...
T Consensus 66 ~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas-----~~~---vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~--- 134 (559)
T PRK05563 66 NPPDGEPCNECEICKAITNGSLMDVIEIDAAS-----NNG---VDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG--- 134 (559)
T ss_pred CCCCCCCCCccHHHHHHhcCCCCCeEEeeccc-----cCC---HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH---
Confidence 223333211 111 1233444333332222345679999999999766
Q ss_pred cccCCCcchHHHHHHHHHHhhC
Q 008176 414 LNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+++||+.||+
T Consensus 135 -----------a~naLLKtLEe 145 (559)
T PRK05563 135 -----------AFNALLKTLEE 145 (559)
T ss_pred -----------HHHHHHHHhcC
Confidence 89999999994
No 132
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.10 E-value=6.6e-10 Score=127.11 Aligned_cols=110 Identities=26% Similarity=0.326 Sum_probs=71.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
.|+||+.+++.|..++.... -++.+||+||+|+|||++|+++|+.+.+.
T Consensus 19 dIiGQe~~v~~L~~aI~~~r-------------------------------l~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSNK-------------------------------ISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 38999999999999885110 02457899999999999999999887543
Q ss_pred EEEe---cccc----------cc---ccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcc
Q 008176 358 FVIA---DATT----------LT---QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVS 421 (575)
Q Consensus 358 fv~v---~~s~----------l~---~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~ 421 (575)
-... .|.. +. ..+-.| ...++++.+............|++|||+|.+...
T Consensus 68 ~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~---vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~----------- 133 (725)
T PRK07133 68 HKTDLLEPCQECIENVNNSLDIIEMDAASNNG---VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS----------- 133 (725)
T ss_pred ccCCCCCchhHHHHhhcCCCcEEEEeccccCC---HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH-----------
Confidence 1100 0100 00 000111 1224444444332223356679999999999876
Q ss_pred hHHHHHHHHHHhhC
Q 008176 422 GEGVQQALLKMLEG 435 (575)
Q Consensus 422 ~e~vq~aLL~~LEg 435 (575)
.+++||+.||+
T Consensus 134 ---A~NALLKtLEE 144 (725)
T PRK07133 134 ---AFNALLKTLEE 144 (725)
T ss_pred ---HHHHHHHHhhc
Confidence 89999999994
No 133
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.10 E-value=6.5e-10 Score=126.37 Aligned_cols=117 Identities=34% Similarity=0.455 Sum_probs=76.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
.++||+.+++.+...+... .+.+++|+|||||||||+|+++++..
T Consensus 155 ~iiGqs~~~~~l~~~ia~~--------------------------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~ 202 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASP--------------------------------FPQHIILYGPPGVGKTTAARLALEEAKKL 202 (615)
T ss_pred hceeCcHHHHHHHHHHhcC--------------------------------CCCeEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 3799999999876555311 12579999999999999999998665
Q ss_pred -------CCCEEEeccccccc------cccccchhhhH---HHHHhhh------chhhHHhhccCeEeehhHhhhhHhhh
Q 008176 355 -------NVPFVIADATTLTQ------AGYVGEDVESI---LYKLLTV------SDYNVAAAQQGIVYIDEVDKITKKAE 412 (575)
Q Consensus 355 -------~~~fv~v~~s~l~~------sg~vGe~~~~~---l~~lf~~------a~~~l~~~~~~ILfIDEID~l~~~r~ 412 (575)
+.+|+.++|..+.. ..+.|...... ....+.. ....+....+++|||||++.+...
T Consensus 203 ~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-- 280 (615)
T TIGR02903 203 KHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-- 280 (615)
T ss_pred cCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH--
Confidence 35789999876521 01122110000 0111110 011233456889999999999887
Q ss_pred hcccCCCcchHHHHHHHHHHhhCCeecc
Q 008176 413 SLNISRDVSGEGVQQALLKMLEGTVVNV 440 (575)
Q Consensus 413 ~~~~~~~~~~e~vq~aLL~~LEg~~v~v 440 (575)
.|+.|++.|+...+.+
T Consensus 281 ------------~Q~~Ll~~Le~~~v~~ 296 (615)
T TIGR02903 281 ------------LQNKLLKVLEDKRVEF 296 (615)
T ss_pred ------------HHHHHHHHHhhCeEEe
Confidence 8999999999655443
No 134
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=1.1e-09 Score=118.47 Aligned_cols=113 Identities=20% Similarity=0.232 Sum_probs=68.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
.|+||+.+++.|..++..... ++.+||+||+|+|||++|+++|+.+.+.
T Consensus 17 eiiGq~~~~~~L~~~~~~~~~-------------------------------~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMGRV-------------------------------GHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hccChHHHHHHHHHHHHhCCc-------------------------------ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 389999999999888851111 1458899999999999999999988552
Q ss_pred EEE----------ecccc------cc---ccc---cccch-h-hhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 358 FVI----------ADATT------LT---QAG---YVGED-V-ESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 358 fv~----------v~~s~------l~---~sg---~vGe~-~-~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
-.. -.|.. +. ... +-|.+ . ...++++.+............|++|||+|.+...
T Consensus 66 ~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~--- 142 (397)
T PRK14955 66 RMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA--- 142 (397)
T ss_pred CCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH---
Confidence 100 00100 00 000 11110 0 1223333222211112245679999999999875
Q ss_pred cccCCCcchHHHHHHHHHHhhC
Q 008176 414 LNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.++.|++.||.
T Consensus 143 -----------~~~~LLk~LEe 153 (397)
T PRK14955 143 -----------AFNAFLKTLEE 153 (397)
T ss_pred -----------HHHHHHHHHhc
Confidence 78999999983
No 135
>PRK04195 replication factor C large subunit; Provisional
Probab=99.09 E-value=1e-09 Score=121.37 Aligned_cols=112 Identities=29% Similarity=0.429 Sum_probs=75.0
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCCE
Q 008176 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (575)
Q Consensus 279 VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~f 358 (575)
|+|++++++.|..++..... | .+..++||+||||||||++|+++|+.++.++
T Consensus 16 lvg~~~~~~~l~~~l~~~~~------------g----------------~~~~~lLL~GppG~GKTtla~ala~el~~~~ 67 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWLK------------G----------------KPKKALLLYGPPGVGKTSLAHALANDYGWEV 67 (482)
T ss_pred hcCCHHHHHHHHHHHHHHhc------------C----------------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 89999999999998852221 0 0136899999999999999999999999999
Q ss_pred EEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 359 v~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
+.+++++..... .+...+........ +......||+|||+|.+....+ ...+++|+..++
T Consensus 68 ielnasd~r~~~----~i~~~i~~~~~~~s--l~~~~~kvIiIDEaD~L~~~~d----------~~~~~aL~~~l~ 127 (482)
T PRK04195 68 IELNASDQRTAD----VIERVAGEAATSGS--LFGARRKLILLDEVDGIHGNED----------RGGARAILELIK 127 (482)
T ss_pred EEEcccccccHH----HHHHHHHHhhccCc--ccCCCCeEEEEecCcccccccc----------hhHHHHHHHHHH
Confidence 999987644211 11111111111100 1112467999999999875211 125788888887
No 136
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.3e-09 Score=124.85 Aligned_cols=186 Identities=23% Similarity=0.298 Sum_probs=125.4
Q ss_pred ChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHH
Q 008176 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLL 346 (575)
Q Consensus 267 t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtL 346 (575)
|...-...||. |||.++.++++.+.+.++. +.+-+|+|+||+|||.+
T Consensus 161 t~~Ar~gklDP-vIGRd~EI~r~iqIL~RR~--------------------------------KNNPvLiGEpGVGKTAI 207 (786)
T COG0542 161 TELAREGKLDP-VIGRDEEIRRTIQILSRRT--------------------------------KNNPVLVGEPGVGKTAI 207 (786)
T ss_pred HHHHhcCCCCC-CcChHHHHHHHHHHHhccC--------------------------------CCCCeEecCCCCCHHHH
Confidence 44444556665 8999999999999886222 26789999999999999
Q ss_pred HHHHHHHh----------CCCEEEecccccc-ccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcc
Q 008176 347 AKTLARYV----------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (575)
Q Consensus 347 AraLA~~l----------~~~fv~v~~s~l~-~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~ 415 (575)
+..+|... +..++.++...+. .++|.|+ ++..+..++.... ...+.||||||||.+...-...
T Consensus 208 vEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGe-FEeRlk~vl~ev~----~~~~vILFIDEiHtiVGAG~~~- 281 (786)
T COG0542 208 VEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGE-FEERLKAVLKEVE----KSKNVILFIDEIHTIVGAGATE- 281 (786)
T ss_pred HHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCc-HHHHHHHHHHHHh----cCCCeEEEEechhhhcCCCccc-
Confidence 99999665 4567888888754 4678898 5777877776543 2448899999999998762111
Q ss_pred cCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhh
Q 008176 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (575)
Q Consensus 416 ~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~ 495 (575)
+. +-+ +-|.|.-+|.-+ .+.+|.+|+
T Consensus 282 --G~-a~D-AaNiLKPaLARG-----------------------eL~~IGATT--------------------------- 307 (786)
T COG0542 282 --GG-AMD-AANLLKPALARG-----------------------ELRCIGATT--------------------------- 307 (786)
T ss_pred --cc-ccc-hhhhhHHHHhcC-----------------------CeEEEEecc---------------------------
Confidence 11 111 566677777621 134455554
Q ss_pred ccCCCChHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHhhCCCeE
Q 008176 496 RAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVSA 571 (575)
Q Consensus 496 ~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~~~~~~~~~~i~l 571 (575)
.+++++.+++. +.+-.||.. |.++..+.++-..|++ .+...|. .+++|++
T Consensus 308 ----------~~EYRk~iEKD--------~AL~RRFQ~-V~V~EPs~e~ti~ILr----Glk~~yE---~hH~V~i 357 (786)
T COG0542 308 ----------LDEYRKYIEKD--------AALERRFQK-VLVDEPSVEDTIAILR----GLKERYE---AHHGVRI 357 (786)
T ss_pred ----------HHHHHHHhhhc--------hHHHhcCce-eeCCCCCHHHHHHHHH----HHHHHHH---HccCcee
Confidence 34455555543 455555543 7778889988888887 5544554 4455554
No 137
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.08 E-value=7.7e-10 Score=124.41 Aligned_cols=140 Identities=30% Similarity=0.395 Sum_probs=86.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCC-
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~- 356 (575)
.|+||+.+++.|..++.... .++.+||+||+|+|||++|+++|+.+.+
T Consensus 17 dIIGQe~iv~~L~~aI~~~r-------------------------------l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 17 QIIGQELIKKILVNAILNNK-------------------------------LTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 37999999999998884100 0246889999999999999999998743
Q ss_pred -----------------------CEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 357 -----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 357 -----------------------~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
+++.+++.. ..|. ..++++..............|++|||+|.+...
T Consensus 66 ~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas-----~igV---d~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~--- 134 (605)
T PRK05896 66 NPKDGDCCNSCSVCESINTNQSVDIVELDAAS-----NNGV---DEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS--- 134 (605)
T ss_pred CCCCCCCCcccHHHHHHHcCCCCceEEecccc-----ccCH---HHHHHHHHHHHhchhhCCcEEEEEechHhCCHH---
Confidence 122222211 1121 223444333222222245679999999999765
Q ss_pred cccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEE-ecCCCcChHHHHHhhhcccCCCCCCchh
Q 008176 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFI-CGGAFVDIEKTISERRQDSSIGFGAPVR 492 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I-~tgn~~dL~~~i~~rr~~~~IgF~~p~~ 492 (575)
.+++|++.||+. ..++++| +|+....+...++.|. ..+.|..+..
T Consensus 135 -----------A~NaLLKtLEEP---------------------p~~tvfIL~Tt~~~KLl~TI~SRc--q~ieF~~Ls~ 180 (605)
T PRK05896 135 -----------AWNALLKTLEEP---------------------PKHVVFIFATTEFQKIPLTIISRC--QRYNFKKLNN 180 (605)
T ss_pred -----------HHHHHHHHHHhC---------------------CCcEEEEEECCChHhhhHHHHhhh--hhcccCCCCH
Confidence 799999999941 1224444 4444444655665553 3566665544
Q ss_pred h
Q 008176 493 A 493 (575)
Q Consensus 493 e 493 (575)
+
T Consensus 181 ~ 181 (605)
T PRK05896 181 S 181 (605)
T ss_pred H
Confidence 3
No 138
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.07 E-value=3.9e-10 Score=124.69 Aligned_cols=192 Identities=24% Similarity=0.314 Sum_probs=117.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+||+.+++.|..++.+... .+..||.||-||||||+||.+|+.+++.
T Consensus 17 evvGQe~v~~~L~nal~~~ri-------------------------------~hAYlfsG~RGvGKTt~Ari~AkalNC~ 65 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGRI-------------------------------AHAYLFSGPRGVGKTTIARILAKALNCE 65 (515)
T ss_pred HhcccHHHHHHHHHHHHhCcc-------------------------------hhhhhhcCCCCcCchhHHHHHHHHhcCC
Confidence 379999999999999962211 2578899999999999999999988653
Q ss_pred E--EE---ec---ccccc--------c---cccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCC
Q 008176 358 F--VI---AD---ATTLT--------Q---AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (575)
Q Consensus 358 f--v~---v~---~s~l~--------~---sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~ 418 (575)
- .. .. |.++. + ..-.| ...++++.+...+.....+..|.+|||+|.+...
T Consensus 66 ~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~g---VddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~-------- 134 (515)
T COG2812 66 NGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTG---VDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ-------- 134 (515)
T ss_pred CCCCCCcchhhhhhHhhhcCCcccchhhhhhhccC---hHHHHHHHHHhccCCccccceEEEEecHHhhhHH--------
Confidence 1 00 01 11111 1 11111 2334555555555445567889999999999987
Q ss_pred CcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHhhhcccCCCCCCchhhhhcc
Q 008176 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRA 497 (575)
Q Consensus 419 ~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~rr~~~~IgF~~p~~e~~~~ 497 (575)
..|+||+-+|+ ...++.||++|.-.. +...+..|.+ .+..
T Consensus 135 ------afNALLKTLEE---------------------PP~hV~FIlATTe~~Kip~TIlSRcq------------~f~f 175 (515)
T COG2812 135 ------AFNALLKTLEE---------------------PPSHVKFILATTEPQKIPNTILSRCQ------------RFDF 175 (515)
T ss_pred ------HHHHHhccccc---------------------CccCeEEEEecCCcCcCchhhhhccc------------cccc
Confidence 89999999995 345577776655444 5555554432 2223
Q ss_pred CCCChHHHHHHHHhhhcchhhh------------hcCCCCccccccceEEEcC--CCCHHHHHHHHh
Q 008176 498 GGVTDAVVTSSLMETVESSDLI------------AYGLIPEFVGRFPVLVSLL--ALTENQLVQVLT 550 (575)
Q Consensus 498 ~~l~~~~~~~~ll~~l~~~dl~------------~~gl~Pefi~Rf~~ii~~~--~LsedeL~eIl~ 550 (575)
..++.+++...+...+.++++. ..|-..+-++-+++.+.+. .++.+++..++.
T Consensus 176 kri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~It~~~v~~~lG 242 (515)
T COG2812 176 KRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGEITLESVRDMLG 242 (515)
T ss_pred cCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCCcccHHHHHHHhC
Confidence 3455555555555555544331 1222333344445555554 467777666654
No 139
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.06 E-value=2.4e-09 Score=119.51 Aligned_cols=154 Identities=16% Similarity=0.279 Sum_probs=96.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
.++|.+.+.+.+...+. +. .....+|||+|++||||+++|+++....
T Consensus 205 ~~ig~s~~~~~~~~~~~----~~--------------------------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~ 254 (520)
T PRK10820 205 QIVAVSPKMRQVVEQAR----KL--------------------------AMLDAPLLITGDTGTGKDLLAYACHLRSPRG 254 (520)
T ss_pred ceeECCHHHHHHHHHHH----HH--------------------------hCCCCCEEEECCCCccHHHHHHHHHHhCCCC
Confidence 37999988888777664 10 0123679999999999999999997664
Q ss_pred CCCEEEeccccccccc----cccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHH
Q 008176 355 NVPFVIADATTLTQAG----YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (575)
Q Consensus 355 ~~~fv~v~~s~l~~sg----~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL 430 (575)
+.||+.++|..+.+.. +.|.. ...+..........+..+.+++||||||+.++.. +|..|+
T Consensus 255 ~~pfv~inca~~~~~~~e~elFG~~-~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~--------------~Q~~Ll 319 (520)
T PRK10820 255 KKPFLALNCASIPDDVVESELFGHA-PGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPR--------------MQAKLL 319 (520)
T ss_pred CCCeEEeccccCCHHHHHHHhcCCC-CCCcCCcccCCCChhhhcCCCEEEEeChhhCCHH--------------HHHHHH
Confidence 4789999998865310 11111 0000000000111234467899999999999988 999999
Q ss_pred HHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCC
Q 008176 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (575)
Q Consensus 431 ~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF 487 (575)
++++...+. ..+... ....++.+|++++ .++.+++..+.|+..+.|
T Consensus 320 ~~l~~~~~~-------~~g~~~---~~~~~vRiI~st~-~~l~~l~~~g~f~~dL~~ 365 (520)
T PRK10820 320 RFLNDGTFR-------RVGEDH---EVHVDVRVICATQ-KNLVELVQKGEFREDLYY 365 (520)
T ss_pred HHHhcCCcc-------cCCCCc---ceeeeeEEEEecC-CCHHHHHHcCCccHHHHh
Confidence 999843221 111111 1134578888876 467777766655444333
No 140
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.06 E-value=1.4e-09 Score=114.33 Aligned_cols=105 Identities=31% Similarity=0.413 Sum_probs=68.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+||+++++.|...+.... .++.+||+||||+|||++|+++++.+...
T Consensus 15 ~iig~~~~~~~l~~~~~~~~-------------------------------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNGR-------------------------------IAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred hccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 37999999999998884100 12457899999999999999999887432
Q ss_pred ------------------------EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 358 ------------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
++.+++.. . .. ...+++++.............||+|||+|.+...
T Consensus 64 ~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~-----~--~~-~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~--- 132 (355)
T TIGR02397 64 NGPDGEPCNECESCKEINSGSSLDVIEIDAAS-----N--NG-VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS--- 132 (355)
T ss_pred CCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc-----c--CC-HHHHHHHHHHHhcCcccCCceEEEEeChhhcCHH---
Confidence 22222211 0 01 1223344433322111235569999999999765
Q ss_pred cccCCCcchHHHHHHHHHHhhC
Q 008176 414 LNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.++.|++.+|+
T Consensus 133 -----------~~~~Ll~~le~ 143 (355)
T TIGR02397 133 -----------AFNALLKTLEE 143 (355)
T ss_pred -----------HHHHHHHHHhC
Confidence 78999999983
No 141
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.06 E-value=1.3e-09 Score=124.34 Aligned_cols=153 Identities=18% Similarity=0.260 Sum_probs=99.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
.++|.+.+.+.+.+.+...- ....+|||+|++||||+++|++|.+..
T Consensus 326 ~l~g~s~~~~~~~~~~~~~a------------------------------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~ 375 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGRQAA------------------------------KSSFPVLLCGEEGVGKALLAQAIHNESERA 375 (638)
T ss_pred ceEECCHHHHHHHHHHHHHh------------------------------CcCCCEEEECCCCcCHHHHHHHHHHhCCcc
Confidence 37899988888877764110 123679999999999999999998865
Q ss_pred CCCEEEecccccccc----ccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHH
Q 008176 355 NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (575)
Q Consensus 355 ~~~fv~v~~s~l~~s----g~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL 430 (575)
+.||+.++|..+.+. .+.|+.... .-......+..+.+++||||||+.++.. +|..|+
T Consensus 376 ~~pfv~vnc~~~~~~~~~~elfg~~~~~----~~~~~~g~~~~a~~GtL~ldei~~l~~~--------------~Q~~Ll 437 (638)
T PRK11388 376 AGPYIAVNCQLYPDEALAEEFLGSDRTD----SENGRLSKFELAHGGTLFLEKVEYLSPE--------------LQSALL 437 (638)
T ss_pred CCCeEEEECCCCChHHHHHHhcCCCCcC----ccCCCCCceeECCCCEEEEcChhhCCHH--------------HHHHHH
Confidence 479999999886531 122221000 0000001233467899999999999988 999999
Q ss_pred HHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCC
Q 008176 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGA 489 (575)
Q Consensus 431 ~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~ 489 (575)
++++...+.- .+....+ .-++.+|++++ .++.+.+..+.|+..+.|..
T Consensus 438 ~~l~~~~~~~-------~~~~~~~---~~~~riI~~t~-~~l~~~~~~~~f~~dL~~~l 485 (638)
T PRK11388 438 QVLKTGVITR-------LDSRRLI---PVDVRVIATTT-ADLAMLVEQNRFSRQLYYAL 485 (638)
T ss_pred HHHhcCcEEe-------CCCCceE---EeeEEEEEecc-CCHHHHHhcCCChHHHhhhh
Confidence 9998543320 0111111 22477888887 46777777777655554443
No 142
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.06 E-value=1.3e-09 Score=123.86 Aligned_cols=112 Identities=24% Similarity=0.290 Sum_probs=72.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
.|+||+++++.|..++.... -.+++||+||+|+|||++|+++|+.+++.
T Consensus 17 ~liGq~~i~~~L~~~l~~~r-------------------------------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNR-------------------------------IAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hccChHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 37999999999998885110 02578999999999999999999988652
Q ss_pred EEE----eccc--------------cccccc-cccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCC
Q 008176 358 FVI----ADAT--------------TLTQAG-YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (575)
Q Consensus 358 fv~----v~~s--------------~l~~sg-~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~ 418 (575)
... ..|. ++.... ..... ...+++++..+..........|++|||+|.|...
T Consensus 66 ~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~-vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~-------- 136 (620)
T PRK14948 66 NSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTG-VDNIRELIERAQFAPVQARWKVYVIDECHMLSTA-------- 136 (620)
T ss_pred CcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCC-HHHHHHHHHHHhhChhcCCceEEEEECccccCHH--------
Confidence 110 0010 000000 00111 2345555544432222245679999999999876
Q ss_pred CcchHHHHHHHHHHhhC
Q 008176 419 DVSGEGVQQALLKMLEG 435 (575)
Q Consensus 419 ~~~~e~vq~aLL~~LEg 435 (575)
.+++||+.||+
T Consensus 137 ------a~naLLK~LEe 147 (620)
T PRK14948 137 ------AFNALLKTLEE 147 (620)
T ss_pred ------HHHHHHHHHhc
Confidence 89999999994
No 143
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.05 E-value=1.4e-09 Score=125.04 Aligned_cols=152 Identities=21% Similarity=0.329 Sum_probs=96.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
.++|++.+++.+.+.+.. +.....+|||+|++|||||++|++|....
T Consensus 377 ~liG~S~~~~~~~~~~~~------------------------------~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~ 426 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEM------------------------------VAQSDSTVLILGETGTGKELIARAIHNLSGRN 426 (686)
T ss_pred ceeecCHHHHHHHHHHHH------------------------------HhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC
Confidence 478998888888777741 01123689999999999999999998765
Q ss_pred CCCEEEecccccccc----ccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHH
Q 008176 355 NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (575)
Q Consensus 355 ~~~fv~v~~s~l~~s----g~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL 430 (575)
+.+|+.++|..+.+. .+.|.. ...+..........+..+.+++||||||+.+..+ +|..|+
T Consensus 427 ~~~~v~i~c~~~~~~~~~~~lfg~~-~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~--------------~Q~~L~ 491 (686)
T PRK15429 427 NRRMVKMNCAAMPAGLLESDLFGHE-RGAFTGASAQRIGRFELADKSSLFLDEVGDMPLE--------------LQPKLL 491 (686)
T ss_pred CCCeEEEecccCChhHhhhhhcCcc-cccccccccchhhHHHhcCCCeEEEechhhCCHH--------------HHHHHH
Confidence 579999999876421 122211 0000000000011233467899999999999988 999999
Q ss_pred HHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCC
Q 008176 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (575)
Q Consensus 431 ~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~I 485 (575)
.+|+...+.- .+.. .....++.+|++++ .++++.+..+.|+..+
T Consensus 492 ~~l~~~~~~~-------~g~~---~~~~~~~RiI~~t~-~~l~~~~~~~~f~~~L 535 (686)
T PRK15429 492 RVLQEQEFER-------LGSN---KIIQTDVRLIAATN-RDLKKMVADREFRSDL 535 (686)
T ss_pred HHHHhCCEEe-------CCCC---CcccceEEEEEeCC-CCHHHHHHcCcccHHH
Confidence 9998533221 0111 11234678888887 4667777666554433
No 144
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.05 E-value=2.8e-09 Score=117.13 Aligned_cols=107 Identities=27% Similarity=0.354 Sum_probs=69.5
Q ss_pred hcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 275 Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
|++ |+||+.+++.|..++.... -++.+||+||+|+|||++|+++|+.+
T Consensus 16 ~~d-iiGq~~~v~~L~~~i~~~~-------------------------------i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 16 FSE-ILGQDAVVAVLKNALRFNR-------------------------------AAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred HHH-hcCcHHHHHHHHHHHHcCC-------------------------------CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 444 8999999999998885100 12457899999999999999999887
Q ss_pred CCC-------------------------EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhH
Q 008176 355 NVP-------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (575)
Q Consensus 355 ~~~-------------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~ 409 (575)
... ++.+++. ...|. ..++.+.+............|++|||+|.+..
T Consensus 64 ~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~-----~~~gi---d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~ 135 (451)
T PRK06305 64 NCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGA-----SHRGI---EDIRQINETVLFTPSKSRYKIYIIDEVHMLTK 135 (451)
T ss_pred cCCCcccCCCCCcccHHHHHHhcCCCCceEEeecc-----ccCCH---HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH
Confidence 432 2222211 11111 12222222211111224677999999999987
Q ss_pred hhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 410 KAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 410 ~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
. .++.|++.||.
T Consensus 136 ~--------------~~n~LLk~lEe 147 (451)
T PRK06305 136 E--------------AFNSLLKTLEE 147 (451)
T ss_pred H--------------HHHHHHHHhhc
Confidence 6 79999999993
No 145
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.04 E-value=1.6e-09 Score=122.58 Aligned_cols=110 Identities=29% Similarity=0.321 Sum_probs=72.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+||+.+++.|..++.... .++.+||+||+|+|||++|+++|+.+++.
T Consensus 25 dliGq~~~v~~L~~~~~~gr-------------------------------i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETGR-------------------------------IAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 38999999999998885110 12578999999999999999999988643
Q ss_pred EEEec-------cc--------------cccc---cccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 358 FVIAD-------AT--------------TLTQ---AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 358 fv~v~-------~s--------------~l~~---sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
....+ |. ++.. .+..| ...++++++............|++|||+|.+...
T Consensus 74 ~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~g---vd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~--- 147 (598)
T PRK09111 74 GPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTG---VDDIREIIESVRYRPVSARYKVYIIDEVHMLSTA--- 147 (598)
T ss_pred CccccCCCccccCcccHHHHHHhcCCCCceEEecccccCC---HHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHH---
Confidence 21111 00 0000 11112 1234444444333222346679999999999876
Q ss_pred cccCCCcchHHHHHHHHHHhhC
Q 008176 414 LNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+++||+.||+
T Consensus 148 -----------a~naLLKtLEe 158 (598)
T PRK09111 148 -----------AFNALLKTLEE 158 (598)
T ss_pred -----------HHHHHHHHHHh
Confidence 79999999994
No 146
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.04 E-value=1.6e-09 Score=120.77 Aligned_cols=107 Identities=36% Similarity=0.448 Sum_probs=70.0
Q ss_pred hcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 275 Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
+++ |+||+.+++.|..++.... -++.+||+||+|+|||++|+++|+.+
T Consensus 13 fde-iiGqe~v~~~L~~~I~~gr-------------------------------l~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 13 FDE-LIGQESVSKTLSLALDNNR-------------------------------LAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred HHH-ccCcHHHHHHHHHHHHcCC-------------------------------CCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 444 8999999999998885110 01345899999999999999999887
Q ss_pred CC------------------------CEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHh
Q 008176 355 NV------------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (575)
Q Consensus 355 ~~------------------------~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~ 410 (575)
.. .++.++++. ..| ...+++...............|++|||+|.+...
T Consensus 61 ~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas-----~~g---Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~ 132 (535)
T PRK08451 61 VCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAAS-----NRG---IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKE 132 (535)
T ss_pred cCCCCCCCCCCcccHHHHHHhhcCCCeEEEecccc-----ccC---HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH
Confidence 32 122222211 111 1233444332211111235679999999999876
Q ss_pred hhhcccCCCcchHHHHHHHHHHhhC
Q 008176 411 AESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 411 r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+++||+.||+
T Consensus 133 --------------A~NALLK~LEE 143 (535)
T PRK08451 133 --------------AFNALLKTLEE 143 (535)
T ss_pred --------------HHHHHHHHHhh
Confidence 89999999994
No 147
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.02 E-value=3e-09 Score=110.69 Aligned_cols=110 Identities=27% Similarity=0.407 Sum_probs=69.5
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC---
Q 008176 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (575)
Q Consensus 279 VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~--- 355 (575)
++|++++++.|..++... ..++++|+||||||||++|+++++.+.
T Consensus 17 ~~g~~~~~~~L~~~~~~~--------------------------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~ 64 (337)
T PRK12402 17 ILGQDEVVERLSRAVDSP--------------------------------NLPHLLVQGPPGSGKTAAVRALARELYGDP 64 (337)
T ss_pred hcCCHHHHHHHHHHHhCC--------------------------------CCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 789999999998877400 014799999999999999999999873
Q ss_pred --CCEEEecccccccc--ccccch----------------hhhHHHHHhhhc-hhhHHhhccCeEeehhHhhhhHhhhhc
Q 008176 356 --VPFVIADATTLTQA--GYVGED----------------VESILYKLLTVS-DYNVAAAQQGIVYIDEVDKITKKAESL 414 (575)
Q Consensus 356 --~~fv~v~~s~l~~s--g~vGe~----------------~~~~l~~lf~~a-~~~l~~~~~~ILfIDEID~l~~~r~~~ 414 (575)
.+++.+++.++... ...++. ....++...... ..........+|+|||+|.+...
T Consensus 65 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~---- 140 (337)
T PRK12402 65 WENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED---- 140 (337)
T ss_pred cccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH----
Confidence 34667777654211 011000 011122211111 00000134569999999998765
Q ss_pred ccCCCcchHHHHHHHHHHhh
Q 008176 415 NISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 415 ~~~~~~~~e~vq~aLL~~LE 434 (575)
.++.|+..|+
T Consensus 141 ----------~~~~L~~~le 150 (337)
T PRK12402 141 ----------AQQALRRIME 150 (337)
T ss_pred ----------HHHHHHHHHH
Confidence 6888999988
No 148
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.01 E-value=4.9e-09 Score=118.00 Aligned_cols=105 Identities=23% Similarity=0.300 Sum_probs=69.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+||+.+++.|..++.+.. -++.+||+||+|+|||++|+++|+.++..
T Consensus 17 diiGqe~iv~~L~~~i~~~~-------------------------------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESNK-------------------------------IANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred HccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 38999999999998885110 02458899999999999999999987542
Q ss_pred ------------------------EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 358 ------------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
++.+++.. -.+ ...++++.+............|++|||+|.+...
T Consensus 66 ~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas-----~~~---vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~--- 134 (563)
T PRK06647 66 NGPTPMPCGECSSCKSIDNDNSLDVIEIDGAS-----NTS---VQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNS--- 134 (563)
T ss_pred cCCCCCCCccchHHHHHHcCCCCCeEEecCcc-----cCC---HHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHH---
Confidence 12222111 000 1223333322222222346679999999999876
Q ss_pred cccCCCcchHHHHHHHHHHhhC
Q 008176 414 LNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+++||+.||+
T Consensus 135 -----------a~naLLK~LEe 145 (563)
T PRK06647 135 -----------AFNALLKTIEE 145 (563)
T ss_pred -----------HHHHHHHhhcc
Confidence 89999999993
No 149
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=5.7e-09 Score=115.64 Aligned_cols=105 Identities=32% Similarity=0.404 Sum_probs=68.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
.|+||+.+++.|..++.... -++.+||+||+|+|||++|+.+|+.+++.
T Consensus 17 diiGq~~i~~~L~~~i~~~~-------------------------------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~ 65 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQR-------------------------------VSHAYIFAGPRGTGKTTIARILAKVLNCL 65 (486)
T ss_pred HccChHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 37999999999998885110 01346799999999999999999987531
Q ss_pred ------------------------EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 358 ------------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
++.++.+ .-.|. ..++.+..............|++|||+|.+...
T Consensus 66 ~~~~~~pc~~c~nc~~i~~g~~~d~~eidaa-----s~~gv---d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~--- 134 (486)
T PRK14953 66 NPQEGEPCGKCENCVEIDKGSFPDLIEIDAA-----SNRGI---DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE--- 134 (486)
T ss_pred CCCCCCCCCccHHHHHHhcCCCCcEEEEeCc-----cCCCH---HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH---
Confidence 1111111 01111 122333222222222245679999999999766
Q ss_pred cccCCCcchHHHHHHHHHHhhC
Q 008176 414 LNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+++|++.|+.
T Consensus 135 -----------a~naLLk~LEe 145 (486)
T PRK14953 135 -----------AFNALLKTLEE 145 (486)
T ss_pred -----------HHHHHHHHHhc
Confidence 78999999993
No 150
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=5.8e-09 Score=118.44 Aligned_cols=113 Identities=20% Similarity=0.238 Sum_probs=69.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
.|+||+.+++.|..++.... -++.+||+||+||||||+|+++|+.+++.
T Consensus 17 eivGQe~i~~~L~~~i~~~r-------------------------------i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 17 DITAQEHITHTIQNSLRMDR-------------------------------VGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 37999999999988875110 01458899999999999999999998652
Q ss_pred EEE----------ecccc------cc---ccc---cccchh--hhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 358 FVI----------ADATT------LT---QAG---YVGEDV--ESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 358 fv~----------v~~s~------l~---~sg---~vGe~~--~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
-.. -.|.. +. ... +-|.+. ...++.+.+............|++|||+|.+...
T Consensus 66 ~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~--- 142 (620)
T PRK14954 66 RMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA--- 142 (620)
T ss_pred CcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH---
Confidence 100 01100 00 000 111100 1233333332221122245679999999999876
Q ss_pred cccCCCcchHHHHHHHHHHhhC
Q 008176 414 LNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+++||+.||+
T Consensus 143 -----------a~naLLK~LEe 153 (620)
T PRK14954 143 -----------AFNAFLKTLEE 153 (620)
T ss_pred -----------HHHHHHHHHhC
Confidence 79999999994
No 151
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.99 E-value=2.6e-09 Score=124.09 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=91.1
Q ss_pred HHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHH
Q 008176 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (575)
Q Consensus 271 l~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraL 350 (575)
+...+...|.|.+.+|+.|..++..-. ......+ ...++ ..+... -....||||+|+||||||.+|+++
T Consensus 444 L~~SiaP~I~G~e~vK~ailL~L~gG~-------~k~~~~~--~~~dg-~~~~~~-iRgdihVLLvGDPGTGKSqLAr~I 512 (915)
T PTZ00111 444 LLDSFAPSIKARNNVKIGLLCQLFSGN-------KNSSDFN--KSPDA-CYKVDN-FRGIINVLLCGDPGTAKSQLLHYT 512 (915)
T ss_pred HHHHhCCeEECCHHHHHHHHHHHhcCC-------ccccccc--ccccc-cccccc-ccCCceEEEeCCCCccHHHHHHHH
Confidence 445555679999999998877664111 0000000 00000 000001 112359999999999999999999
Q ss_pred HHHhC-------CCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchH
Q 008176 351 ARYVN-------VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (575)
Q Consensus 351 A~~l~-------~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e 423 (575)
++... .++..+.++.... +.... ...+......+..+.+|+++|||++++...
T Consensus 513 h~lspR~~ytsG~~~s~vgLTa~~~--~~d~~-----tG~~~le~GaLvlAdgGtL~IDEidkms~~------------- 572 (915)
T PTZ00111 513 HLLSPRSIYTSGKSSSSVGLTASIK--FNESD-----NGRAMIQPGAVVLANGGVCCIDELDKCHNE------------- 572 (915)
T ss_pred HHhCCccccCCCCCCccccccchhh--hcccc-----cCcccccCCcEEEcCCCeEEecchhhCCHH-------------
Confidence 98653 2333333332110 00000 000111111234467899999999999887
Q ss_pred HHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCc
Q 008176 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (575)
Q Consensus 424 ~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~ 470 (575)
.|.+|+++||..+++|...|.. .....++.+||++|+.
T Consensus 573 -~Q~aLlEaMEqqtIsI~KaGi~--------~tL~ar~rVIAAaNP~ 610 (915)
T PTZ00111 573 -SRLSLYEVMEQQTVTIAKAGIV--------ATLKAETAILASCNPI 610 (915)
T ss_pred -HHHHHHHHHhCCEEEEecCCcc--------eecCCCeEEEEEcCCc
Confidence 8999999999777766333322 1234568889998863
No 152
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=6.1e-09 Score=110.87 Aligned_cols=112 Identities=29% Similarity=0.343 Sum_probs=69.9
Q ss_pred hcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 275 Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
+++ |+||+.+++.+...+.... .++++||+||||+|||++|+++++.+
T Consensus 16 ~~~-iig~~~~~~~l~~~i~~~~-------------------------------~~~~~L~~G~~G~GKt~~a~~la~~l 63 (367)
T PRK14970 16 FDD-VVGQSHITNTLLNAIENNH-------------------------------LAQALLFCGPRGVGKTTCARILARKI 63 (367)
T ss_pred HHh-cCCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 444 7999999999998885110 12578899999999999999999987
Q ss_pred CCCEEEeccc-------cccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHH
Q 008176 355 NVPFVIADAT-------TLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (575)
Q Consensus 355 ~~~fv~v~~s-------~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~ 427 (575)
..+.....+. ++...+..+ ...++.++..+..........||+|||+|.+... .++
T Consensus 64 ~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~--------------~~~ 126 (367)
T PRK14970 64 NQPGYDDPNEDFSFNIFELDAASNNS---VDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA--------------AFN 126 (367)
T ss_pred cCCCCCCCCCCCCcceEEeccccCCC---HHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH--------------HHH
Confidence 5422111110 010001111 1233444433221111234569999999998765 688
Q ss_pred HHHHHhhC
Q 008176 428 ALLKMLEG 435 (575)
Q Consensus 428 aLL~~LEg 435 (575)
.|++.|++
T Consensus 127 ~ll~~le~ 134 (367)
T PRK14970 127 AFLKTLEE 134 (367)
T ss_pred HHHHHHhC
Confidence 99999983
No 153
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=7.4e-09 Score=117.21 Aligned_cols=105 Identities=30% Similarity=0.351 Sum_probs=68.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+||+.+++.|..++.... -.+.+||+||+|+|||++|+++|+.+++.
T Consensus 17 eiiGq~~~~~~L~~~i~~~~-------------------------------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 17 ELVGQEHVVQTLRNAIAEGR-------------------------------VAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred HhcCCHHHHHHHHHHHHhCC-------------------------------CceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 48999999999988885110 01456899999999999999999987532
Q ss_pred E-------------------------EEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhh
Q 008176 358 F-------------------------VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (575)
Q Consensus 358 f-------------------------v~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~ 412 (575)
. +.++.+ +..+. ..++++.+............||+|||+|.+..+
T Consensus 66 ~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~-----~~~~v---d~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~-- 135 (585)
T PRK14950 66 TNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAA-----SHTSV---DDAREIIERVQFRPALARYKVYIIDEVHMLSTA-- 135 (585)
T ss_pred CCCCCCCCCccCHHHHHHhcCCCCeEEEEecc-----ccCCH---HHHHHHHHHHhhCcccCCeEEEEEeChHhCCHH--
Confidence 1 111111 11111 122333222211111245679999999999876
Q ss_pred hcccCCCcchHHHHHHHHHHhhC
Q 008176 413 SLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 413 ~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.++.||+.||+
T Consensus 136 ------------a~naLLk~LEe 146 (585)
T PRK14950 136 ------------AFNALLKTLEE 146 (585)
T ss_pred ------------HHHHHHHHHhc
Confidence 79999999994
No 154
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.96 E-value=5.8e-09 Score=92.58 Aligned_cols=87 Identities=34% Similarity=0.599 Sum_probs=56.8
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l 407 (575)
.+++++||||||||++++.+++.+ +.+++.+++.+.... .......... .............+++|+|||++.+
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEG-LVVAELFGHF--LVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhh-hHHHHHhhhh--hHhHHHHhhccCCCeEEEEeChhhh
Confidence 578999999999999999999988 888888888765421 1111000000 0000001112246789999999998
Q ss_pred hHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
... .+..++..++
T Consensus 97 ~~~--------------~~~~~~~~i~ 109 (151)
T cd00009 97 SRG--------------AQNALLRVLE 109 (151)
T ss_pred hHH--------------HHHHHHHHHH
Confidence 554 5667777777
No 155
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.95 E-value=4.3e-09 Score=112.92 Aligned_cols=142 Identities=24% Similarity=0.289 Sum_probs=85.6
Q ss_pred hcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 275 Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
+...++||+.-|..|.....+ ..-+++|+.|+.|+||||++|+|+..+
T Consensus 15 pf~aivGqd~lk~aL~l~av~--------------------------------P~iggvLI~G~kGtaKSt~~Rala~LL 62 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVD--------------------------------PQIGGALIAGEKGTAKSTLARALADLL 62 (423)
T ss_pred chhhhcCchHHHHHHhhhhcc--------------------------------cccceeEEecCCCccHHHHHHHHHHhC
Confidence 344689999999887643321 122789999999999999999999888
Q ss_pred CCCEEEecc----cccc----------------------------------ccc-cccc-hhhhHHHHHhhh-chhhHHh
Q 008176 355 NVPFVIADA----TTLT----------------------------------QAG-YVGE-DVESILYKLLTV-SDYNVAA 393 (575)
Q Consensus 355 ~~~fv~v~~----s~l~----------------------------------~sg-~vGe-~~~~~l~~lf~~-a~~~l~~ 393 (575)
.---+...| .... ..+ .+|. ++.+.+..-... ....+..
T Consensus 63 p~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~ 142 (423)
T COG1239 63 PEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLAR 142 (423)
T ss_pred CccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhh
Confidence 211111111 0000 001 2222 112222211111 1124567
Q ss_pred hccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCc
Q 008176 394 AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (575)
Q Consensus 394 ~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~ 470 (575)
++.||+|+||+..+... +|+.||.+++++.-.|--.|.. +-...++++|+|.|..
T Consensus 143 AnRGIlYvDEvnlL~d~--------------lvd~LLd~aaeG~n~vereGis--------i~hpa~fvligTmNPE 197 (423)
T COG1239 143 ANRGILYVDEVNLLDDH--------------LVDALLDVAAEGVNDVEREGIS--------IRHPARFLLIGTMNPE 197 (423)
T ss_pred ccCCEEEEeccccccHH--------------HHHHHHHHHHhCCceeeeCcee--------eccCccEEEEeecCcc
Confidence 89999999999999887 9999999999643222112211 1234568899999864
No 156
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.94 E-value=1.8e-08 Score=101.98 Aligned_cols=176 Identities=20% Similarity=0.327 Sum_probs=109.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
.++|.++.|+.|.+-....... .+..|+||+|+.|||||++++++...+
T Consensus 28 ~L~Gie~Qk~~l~~Nt~~Fl~G----------------------------~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 28 DLIGIERQKEALIENTEQFLQG----------------------------LPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred HhcCHHHHHHHHHHHHHHHHcC----------------------------CCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 3799999999998877533221 123799999999999999999998776
Q ss_pred CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 355 ~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
|..++++...++.. ... +.+.+... ..+=|||+|++- -+. .+.--..|-.+||
T Consensus 80 GLRlIev~k~~L~~-------l~~-l~~~l~~~------~~kFIlf~DDLs---Fe~----------~d~~yk~LKs~Le 132 (249)
T PF05673_consen 80 GLRLIEVSKEDLGD-------LPE-LLDLLRDR------PYKFILFCDDLS---FEE----------GDTEYKALKSVLE 132 (249)
T ss_pred CceEEEECHHHhcc-------HHH-HHHHHhcC------CCCEEEEecCCC---CCC----------CcHHHHHHHHHhc
Confidence 56778777766542 112 22222221 234599999732 110 1114678888999
Q ss_pred CCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhh
Q 008176 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (575)
Q Consensus 435 g~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l 513 (575)
|.. .-..+|+++.+|+|... +.+...++.. +..++ +-. .+.+.+.
T Consensus 133 Ggl-----------------e~~P~NvliyATSNRRHLv~E~~~d~~~--------~~~~e-----ih~---~d~~eEk- 178 (249)
T PF05673_consen 133 GGL-----------------EARPDNVLIYATSNRRHLVPESFSDRED--------IQDDE-----IHP---SDTIEEK- 178 (249)
T ss_pred Ccc-----------------ccCCCcEEEEEecchhhccchhhhhccC--------CCccc-----cCc---chHHHHH-
Confidence 742 22467899999999655 2222222211 00000 000 0111111
Q ss_pred cchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhH
Q 008176 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPK 553 (575)
Q Consensus 514 ~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l 553 (575)
-.+.+||...+.|.+.+.++..+|++...
T Consensus 179 -----------lSLsDRFGL~l~F~~~~q~~YL~IV~~~~ 207 (249)
T PF05673_consen 179 -----------LSLSDRFGLWLSFYPPDQEEYLAIVRHYA 207 (249)
T ss_pred -----------HhHHHhCCcEEEecCCCHHHHHHHHHHHH
Confidence 24668999999999999999999997433
No 157
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.91 E-value=5.6e-09 Score=111.12 Aligned_cols=78 Identities=19% Similarity=0.139 Sum_probs=52.1
Q ss_pred hhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-
Q 008176 393 AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD- 471 (575)
Q Consensus 393 ~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d- 471 (575)
.+.+||+-++|+.+...+ +++.||.+++++.+.+++.... +. -+.+||+++|..+
T Consensus 234 ~aNrGi~~f~Ei~K~~~~--------------~l~~LL~~~qE~~v~~~~~~~~---------~~-~d~liia~sNe~e~ 289 (361)
T smart00763 234 RANRGILEFVEMFKADIK--------------FLHPLLTATQEGNIKGTGGFAM---------IP-IDGLIIAHSNESEW 289 (361)
T ss_pred cccCceEEEeehhcCCHH--------------HHHHHhhhhhcceEecCCcccc---------cc-cceEEEEeCCHHHH
Confidence 456799999999999887 9999999999888776543211 11 1247778887652
Q ss_pred -------hHHHHHhhhcccCCCCCCchhhh
Q 008176 472 -------IEKTISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 472 -------L~~~i~~rr~~~~IgF~~p~~e~ 494 (575)
..+++.+|.....|.|.....++
T Consensus 290 ~~~~~~k~~eaf~dR~~~i~vpY~l~~~~E 319 (361)
T smart00763 290 QRFKSNKKNEALLDRIIKVKVPYCLRVSEE 319 (361)
T ss_pred hhhhccccchhhhhceEEEeCCCcCCHHHH
Confidence 33455566655566665554443
No 158
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.91 E-value=8.2e-09 Score=106.47 Aligned_cols=120 Identities=32% Similarity=0.363 Sum_probs=76.9
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhC------------------------CCEEEeccccccccccccchhhhHHHHHhhhc
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVN------------------------VPFVIADATTLTQAGYVGEDVESILYKLLTVS 387 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~------------------------~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a 387 (575)
.+||+||||+|||++|.++|+.+. ..++.++.++....+ +. ...++++....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~-i~---~~~vr~~~~~~ 101 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID-II---VEQVRELAEFL 101 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc-ch---HHHHHHHHHHh
Confidence 389999999999999999999885 356666666544221 11 22233332221
Q ss_pred hhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecC
Q 008176 388 DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGG 467 (575)
Q Consensus 388 ~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tg 467 (575)
..........|++|||+|.+..+ .+++|++.||+ ...+.+||+.+
T Consensus 102 ~~~~~~~~~kviiidead~mt~~--------------A~nallk~lEe---------------------p~~~~~~il~~ 146 (325)
T COG0470 102 SESPLEGGYKVVIIDEADKLTED--------------AANALLKTLEE---------------------PPKNTRFILIT 146 (325)
T ss_pred ccCCCCCCceEEEeCcHHHHhHH--------------HHHHHHHHhcc---------------------CCCCeEEEEEc
Confidence 11111235679999999999987 89999999994 24456666666
Q ss_pred CCc-ChHHHHHhhhcccCCCCCCchh
Q 008176 468 AFV-DIEKTISERRQDSSIGFGAPVR 492 (575)
Q Consensus 468 n~~-dL~~~i~~rr~~~~IgF~~p~~ 492 (575)
|.. .+-..++.|.+ .+.|..+..
T Consensus 147 n~~~~il~tI~SRc~--~i~f~~~~~ 170 (325)
T COG0470 147 NDPSKILPTIRSRCQ--RIRFKPPSR 170 (325)
T ss_pred CChhhccchhhhcce--eeecCCchH
Confidence 643 35556665543 455554433
No 159
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.91 E-value=1.1e-08 Score=107.95 Aligned_cols=62 Identities=23% Similarity=0.315 Sum_probs=46.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC--
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~-- 355 (575)
.++|+++.++.|...+..... . ..+++++++||||||||++++.+++.+.
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~----~------------------------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~ 67 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILR----G------------------------SRPSNVFIYGKTGTGKTAVTKYVMKELEEA 67 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHc----C------------------------CCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 479999999999988852111 0 0125789999999999999999987652
Q ss_pred -------CCEEEecccccc
Q 008176 356 -------VPFVIADATTLT 367 (575)
Q Consensus 356 -------~~fv~v~~s~l~ 367 (575)
..++.++|....
T Consensus 68 ~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 68 AEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred hhccCCceEEEEEECCCCC
Confidence 457788886643
No 160
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=1.5e-08 Score=115.29 Aligned_cols=105 Identities=28% Similarity=0.321 Sum_probs=70.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+||+.+++.|..++.... -++.+||+||+|+|||++|+++|+.+.+.
T Consensus 18 ~viGq~~~~~~L~~~i~~~~-------------------------------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~ 66 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATNK-------------------------------LAHAYLFCGPRGVGKTTCARIFAKTINCQ 66 (614)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 38999999999998885111 01457899999999999999999987532
Q ss_pred -------------------------EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhh
Q 008176 358 -------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (575)
Q Consensus 358 -------------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~ 412 (575)
+..+++.+ ..+ ...++.+...+..........|++|||+|.+...
T Consensus 67 ~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~-----~~~---vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~-- 136 (614)
T PRK14971 67 NLTADGEACNECESCVAFNEQRSYNIHELDAAS-----NNS---VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQA-- 136 (614)
T ss_pred CCCCCCCCCCcchHHHHHhcCCCCceEEecccc-----cCC---HHHHHHHHHHHhhCcccCCcEEEEEECcccCCHH--
Confidence 22222211 010 1223444333222112245669999999999876
Q ss_pred hcccCCCcchHHHHHHHHHHhhC
Q 008176 413 SLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 413 ~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+++|++.||+
T Consensus 137 ------------a~naLLK~LEe 147 (614)
T PRK14971 137 ------------AFNAFLKTLEE 147 (614)
T ss_pred ------------HHHHHHHHHhC
Confidence 89999999994
No 161
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.90 E-value=2.5e-08 Score=106.52 Aligned_cols=61 Identities=23% Similarity=0.284 Sum_probs=46.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
.++|.++..+.|...+..... . ..+.+++++||||||||++++.+++.+
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~----~------------------------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALR----G------------------------SRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhC----C------------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 479999999999888852111 0 012578999999999999999999876
Q ss_pred --CCCEEEeccccc
Q 008176 355 --NVPFVIADATTL 366 (575)
Q Consensus 355 --~~~fv~v~~s~l 366 (575)
+..++.++|...
T Consensus 83 ~~~~~~v~in~~~~ 96 (394)
T PRK00411 83 AVKVVYVYINCQID 96 (394)
T ss_pred cCCcEEEEEECCcC
Confidence 466888888654
No 162
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.89 E-value=6.7e-09 Score=115.28 Aligned_cols=165 Identities=16% Similarity=0.246 Sum_probs=93.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCC--EEEeccccccc-cccccc------hh------hhHHHHHhh----hchhhH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVP--FVIADATTLTQ-AGYVGE------DV------ESILYKLLT----VSDYNV 391 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~--fv~v~~s~l~~-sg~vGe------~~------~~~l~~lf~----~a~~~l 391 (575)
.+++|+||||+|||++++.++..+... -..+..+.+.. .+.... .+ ......++. .....+
T Consensus 211 ~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l 290 (506)
T PRK09862 211 HNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEI 290 (506)
T ss_pred cEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhHh
Confidence 578899999999999999999776211 01122222110 000000 00 000001111 111245
Q ss_pred HhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC
Q 008176 392 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (575)
Q Consensus 392 ~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d 471 (575)
..+++++|||||++.+.++ +|+.|++.||.+.+.|...+.. .....++.+|+|+|...
T Consensus 291 ~~A~gGvLfLDEi~e~~~~--------------~~~~L~~~LE~g~v~I~r~g~~--------~~~pa~f~lIAa~NP~p 348 (506)
T PRK09862 291 SLAHNGVLFLDELPEFERR--------------TLDALREPIESGQIHLSRTRAK--------ITYPARFQLVAAMNPSP 348 (506)
T ss_pred hhccCCEEecCCchhCCHH--------------HHHHHHHHHHcCcEEEecCCcc--------eeccCCEEEEEeecCcc
Confidence 6678999999999998877 9999999999776665332211 22345788899888532
Q ss_pred hHHHHHhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHH
Q 008176 472 IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (575)
Q Consensus 472 L~~~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~ 546 (575)
.. .|+.+.+. +..+...+++.. +...+++||+..+.+..++.+++.
T Consensus 349 ----------cG--~~~~~~c~-------c~~~~~~~Y~~~----------ls~plLDRfdL~v~v~~~~~~~l~ 394 (506)
T PRK09862 349 ----------TG--HYQGNHNR-------CTPEQTLRYLNR----------LSGPFLDRFDLSLEIPLPPPGILS 394 (506)
T ss_pred ----------ce--ecCCCCCC-------cCHHHHHHHHhh----------CCHhHHhhccEEEEeCCCCHHHHh
Confidence 00 01111111 112222233322 567899999999999988766553
No 163
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=1.9e-08 Score=107.36 Aligned_cols=48 Identities=31% Similarity=0.374 Sum_probs=38.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~ 356 (575)
.|+||+++++.+..++.... -++.+||+||+|+|||++|+.+|+.+..
T Consensus 24 ~l~Gh~~a~~~L~~a~~~gr-------------------------------l~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 24 RLFGHEEAEAFLAQAYREGK-------------------------------LHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred hccCcHHHHHHHHHHHHcCC-------------------------------CCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 48999999999999885110 1245889999999999999999988744
No 164
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.87 E-value=1.4e-08 Score=104.72 Aligned_cols=107 Identities=30% Similarity=0.447 Sum_probs=66.8
Q ss_pred hcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 275 Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
+++ ++|++++++.+..++... ..++++|+||+|||||++++++++.+
T Consensus 16 ~~~-~~g~~~~~~~l~~~i~~~--------------------------------~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 16 LDE-IVGQEEIVERLKSYVKEK--------------------------------NMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred HHH-hcCcHHHHHHHHHHHhCC--------------------------------CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 444 689999999999887410 01468999999999999999999887
Q ss_pred CC-----CEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHH
Q 008176 355 NV-----PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (575)
Q Consensus 355 ~~-----~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aL 429 (575)
.. .++.+++++...... ....+........ .......+|+|||+|.+... .++.|
T Consensus 63 ~~~~~~~~~i~~~~~~~~~~~~----~~~~i~~~~~~~~--~~~~~~~vviiDe~~~l~~~--------------~~~~L 122 (319)
T PRK00440 63 YGEDWRENFLELNASDERGIDV----IRNKIKEFARTAP--VGGAPFKIIFLDEADNLTSD--------------AQQAL 122 (319)
T ss_pred cCCccccceEEeccccccchHH----HHHHHHHHHhcCC--CCCCCceEEEEeCcccCCHH--------------HHHHH
Confidence 32 344444332111000 0111111111110 11123569999999999765 67889
Q ss_pred HHHhh
Q 008176 430 LKMLE 434 (575)
Q Consensus 430 L~~LE 434 (575)
++.++
T Consensus 123 ~~~le 127 (319)
T PRK00440 123 RRTME 127 (319)
T ss_pred HHHHh
Confidence 99988
No 165
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.87 E-value=5.2e-09 Score=118.49 Aligned_cols=117 Identities=24% Similarity=0.331 Sum_probs=76.8
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCC--CEEEeccccccccccccch-hhhHHH-HHhhhchhhHHhhccCeEeehhHhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQAGYVGED-VESILY-KLLTVSDYNVAAAQQGIVYIDEVDK 406 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~--~fv~v~~s~l~~sg~vGe~-~~~~l~-~lf~~a~~~l~~~~~~ILfIDEID~ 406 (575)
++|||.|+||||||++|+++++.+.. +|++++.. .+...+.|.- +...+. ..+......+..+++++||||||+.
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~-~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLG-VTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcc-cchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 79999999999999999999998753 68888763 2223334431 111111 0011112234456789999999999
Q ss_pred hhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCc
Q 008176 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (575)
Q Consensus 407 l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~ 470 (575)
+.+. +|+.|+++|+.+.+.+...|.. .....++.+|+|.|..
T Consensus 96 l~~~--------------~q~~Ll~al~~g~v~i~r~G~~--------~~~p~~f~lIAt~np~ 137 (589)
T TIGR02031 96 LDDG--------------LSNRLLQALDEGVVIVEREGIS--------VVHPAKFALIATYDPA 137 (589)
T ss_pred CCHH--------------HHHHHHHHHHcCCeEEEECCCc--------eeecCceEEEEecCCc
Confidence 9988 9999999999766655322221 1123467788887753
No 166
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=2.7e-08 Score=106.58 Aligned_cols=46 Identities=30% Similarity=0.440 Sum_probs=38.1
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
.|+||+++++.|..++..... ++.+||+||+|+||+++|.++|+.+
T Consensus 20 ~iiGq~~~~~~L~~~~~~~rl-------------------------------~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 20 ALFGHAAAEAALLDAYRSGRL-------------------------------HHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred hccChHHHHHHHHHHHHcCCC-------------------------------CceEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999998851111 2458899999999999999999887
No 167
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.86 E-value=1.7e-08 Score=99.30 Aligned_cols=76 Identities=26% Similarity=0.344 Sum_probs=52.8
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l 407 (575)
.+++|+||+|||||++|+++++.+ +.+++.++++++... ....+... ....+|+|||++.+
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~------~~~~lLvIDdi~~l 102 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA----------DPEVLEGL------EQADLVCLDDVEAI 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh----------HHHHHhhc------ccCCEEEEeChhhh
Confidence 689999999999999999999876 467788888765421 01111111 23469999999998
Q ss_pred hHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
..... .++.|..+++
T Consensus 103 ~~~~~------------~~~~L~~~l~ 117 (226)
T TIGR03420 103 AGQPE------------WQEALFHLYN 117 (226)
T ss_pred cCChH------------HHHHHHHHHH
Confidence 65411 3667777766
No 168
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.85 E-value=1.1e-08 Score=107.51 Aligned_cols=128 Identities=21% Similarity=0.396 Sum_probs=92.0
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccccccchhhhHHHHHhhhch------hhHHhhccCeEe
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSD------YNVAAAQQGIVY 400 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~------~~l~~~~~~ILf 400 (575)
..++|+.|++||||..+|++..... ..||+.++|..+-+. ..-.++|..+. ..++.+.+|.||
T Consensus 227 DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~--------~aEsElFG~apg~~gk~GffE~AngGTVl 298 (511)
T COG3283 227 DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPED--------AAESELFGHAPGDEGKKGFFEQANGGTVL 298 (511)
T ss_pred CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchh--------HhHHHHhcCCCCCCCccchhhhccCCeEE
Confidence 3679999999999999999987554 679999999886531 11123332222 234457899999
Q ss_pred ehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhh
Q 008176 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (575)
Q Consensus 401 IDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr 480 (575)
+|||..+++. .|..||+.+..+++. +.+....+-+ ++.+||++. .++.+.+.++.
T Consensus 299 LDeIgEmSp~--------------lQaKLLRFL~DGtFR-------RVGee~Ev~v---dVRVIcatq-~nL~~lv~~g~ 353 (511)
T COG3283 299 LDEIGEMSPR--------------LQAKLLRFLNDGTFR-------RVGEDHEVHV---DVRVICATQ-VNLVELVQKGK 353 (511)
T ss_pred eehhhhcCHH--------------HHHHHHHHhcCCcee-------ecCCcceEEE---EEEEEeccc-ccHHHHHhcCc
Confidence 9999999998 999999999843332 2233333333 489999987 57899999988
Q ss_pred cccCCCCCCc
Q 008176 481 QDSSIGFGAP 490 (575)
Q Consensus 481 ~~~~IgF~~p 490 (575)
|+..+.|...
T Consensus 354 fReDLfyRLN 363 (511)
T COG3283 354 FREDLFYRLN 363 (511)
T ss_pred hHHHHHHHhh
Confidence 8777666543
No 169
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.84 E-value=2.6e-08 Score=109.11 Aligned_cols=126 Identities=21% Similarity=0.350 Sum_probs=79.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEecccccccc----ccccchhhhHHHHHhhhchhhHHhhccCeEeehh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~s----g~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDE 403 (575)
.++++.|++|||||++|+++.... +.+|+.++|..+.+. ...|.. ...+..........+..+.++.|||||
T Consensus 162 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~-~g~~~~~~~~~~g~~~~a~~Gtl~l~~ 240 (469)
T PRK10923 162 ISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHE-KGAFTGANTIRQGRFEQADGGTLFLDE 240 (469)
T ss_pred CeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCC-CCCCCCCCcCCCCCeeECCCCEEEEec
Confidence 579999999999999999998876 578999999886431 111111 000000000001123345689999999
Q ss_pred HhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcc
Q 008176 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (575)
Q Consensus 404 ID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~ 482 (575)
|+.+... +|..|+++++...+.- .+... ....++.+|++++ .++.+.+..+.|.
T Consensus 241 i~~l~~~--------------~q~~L~~~l~~~~~~~-------~~~~~---~~~~~~rii~~~~-~~l~~~~~~~~~~ 294 (469)
T PRK10923 241 IGDMPLD--------------VQTRLLRVLADGQFYR-------VGGYA---PVKVDVRIIAATH-QNLEQRVQEGKFR 294 (469)
T ss_pred cccCCHH--------------HHHHHHHHHhcCcEEe-------CCCCC---eEEeeEEEEEeCC-CCHHHHHHcCCch
Confidence 9999988 8999999998533221 01111 1123588888887 4566666655543
No 170
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=4.1e-08 Score=102.62 Aligned_cols=107 Identities=21% Similarity=0.313 Sum_probs=69.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+||+.+++.+...+.... -++.+||+||+|+|||++|+++|+.+.+.
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~-------------------------------~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNR-------------------------------FSHAHIIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred hccCcHHHHHHHHHHHHcCC-------------------------------CCceEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 37999999999998884100 12456899999999999999999976322
Q ss_pred --------EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHH
Q 008176 358 --------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (575)
Q Consensus 358 --------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aL 429 (575)
+..+...+ ..-.+ ...++++.+............|++|||+|.+..+ .+|+|
T Consensus 54 ~~~~~h~D~~~~~~~~---~~~i~---v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~--------------a~naL 113 (313)
T PRK05564 54 SQQREYVDIIEFKPIN---KKSIG---VDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ--------------AQNAF 113 (313)
T ss_pred CCCCCCCCeEEecccc---CCCCC---HHHHHHHHHHHhcCcccCCceEEEEechhhcCHH--------------HHHHH
Confidence 22222110 00111 1224444332211111245679999999999877 89999
Q ss_pred HHHhhC
Q 008176 430 LKMLEG 435 (575)
Q Consensus 430 L~~LEg 435 (575)
|+.||+
T Consensus 114 LK~LEe 119 (313)
T PRK05564 114 LKTIEE 119 (313)
T ss_pred HHHhcC
Confidence 999994
No 171
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.83 E-value=1.8e-08 Score=109.40 Aligned_cols=127 Identities=20% Similarity=0.399 Sum_probs=80.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEecccccccc----ccccchhhhHHHHHhhhchhhHHhhccCeEeehh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~s----g~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDE 403 (575)
.++++.|++||||+++|+++.... +.+|+.++|..+.+. .+.|.. ...+..........+..+.+++|||||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~gtl~l~~ 241 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYE-KGAFTGAVKQTLGKIEYAHGGTLFLDE 241 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCC-CCCcCCCccCCCCceeECCCCEEEEec
Confidence 679999999999999999998765 468999999886431 011110 000000000011123346789999999
Q ss_pred HhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhccc
Q 008176 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (575)
Q Consensus 404 ID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~ 483 (575)
|+.++.. +|..|++.++...+.- .+... ....++.+|++++ .++++.+..+.|..
T Consensus 242 i~~l~~~--------------~q~~l~~~l~~~~~~~-------~~~~~---~~~~~~rii~~~~-~~l~~~~~~~~~~~ 296 (445)
T TIGR02915 242 IGDLPLN--------------LQAKLLRFLQERVIER-------LGGRE---EIPVDVRIVCATN-QDLKRMIAEGTFRE 296 (445)
T ss_pred hhhCCHH--------------HHHHHHHHHhhCeEEe-------CCCCc---eeeeceEEEEecC-CCHHHHHHcCCccH
Confidence 9999987 9999999998543221 01111 1224678888887 46777666555543
No 172
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.82 E-value=2.8e-08 Score=99.98 Aligned_cols=64 Identities=16% Similarity=0.206 Sum_probs=39.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhC---CCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~---~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l 407 (575)
.+++|+||+|||||+|++++++.+. ..+..+....... + ...+.+.+ ..-.+|+|||++.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--~-----~~~~~~~~---------~~~dlliiDdi~~~ 109 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--F-----VPEVLEGM---------EQLSLVCIDNIECI 109 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--h-----hHHHHHHh---------hhCCEEEEeChhhh
Confidence 4788999999999999999998763 3333344332210 0 00111111 11248999999998
Q ss_pred hHh
Q 008176 408 TKK 410 (575)
Q Consensus 408 ~~~ 410 (575)
..+
T Consensus 110 ~~~ 112 (235)
T PRK08084 110 AGD 112 (235)
T ss_pred cCC
Confidence 643
No 173
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.82 E-value=2.2e-08 Score=112.67 Aligned_cols=194 Identities=18% Similarity=0.253 Sum_probs=107.4
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCC--cc-cccCccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDD--TV-ELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 279 VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i--~v-~i~~~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
++|.+.+-+.+..++...-.-.+.....++.+. .+....++++.. .. .+++.-+||+||||-||||||..+|+.+|
T Consensus 273 LLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s-~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkqaG 351 (877)
T KOG1969|consen 273 LLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLAS-KGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQAG 351 (877)
T ss_pred HhcchhHHHHHHHHHHhhcHHhhcchHhhhccc-cccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHHHhcC
Confidence 577777777777777533333333222222111 111111222211 11 12334556999999999999999999999
Q ss_pred CCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhh-
Q 008176 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE- 434 (575)
Q Consensus 356 ~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LE- 434 (575)
..++++++++-.....+ ...+..+.......-+-.+|..|+|||||..... +.+.|+.++.
T Consensus 352 YsVvEINASDeRt~~~v----~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~--------------~Vdvilslv~a 413 (877)
T KOG1969|consen 352 YSVVEINASDERTAPMV----KEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRA--------------AVDVILSLVKA 413 (877)
T ss_pred ceEEEecccccccHHHH----HHHHHHHHhhccccccCCCcceEEEecccCCcHH--------------HHHHHHHHHHh
Confidence 99999999985532222 2233333332222112256788899999998755 7888998887
Q ss_pred -CCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHH-hhhcccCCCCCCchhhh
Q 008176 435 -GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTIS-ERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 435 -g~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~-~rr~~~~IgF~~p~~e~ 494 (575)
+....=++.+............-+..|+.||..-+.. +++ .|-+...|.|..|....
T Consensus 414 ~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaP---aLR~Lr~~A~ii~f~~p~~s~ 472 (877)
T KOG1969|consen 414 TNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAP---ALRPLRPFAEIIAFVPPSQSR 472 (877)
T ss_pred hcchhhcCcccchhhhhhhccccccCCEEEEecCccch---hhhhcccceEEEEecCCChhH
Confidence 3222211111110111111223466687888654433 222 23356677887776544
No 174
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.80 E-value=3e-08 Score=112.76 Aligned_cols=50 Identities=40% Similarity=0.572 Sum_probs=41.8
Q ss_pred hhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
.|-+.|+||+++++.+..++. .+.+++|+||||||||++|+++++.
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~----------------------------------~~~~~ll~G~pG~GKT~la~~la~~ 60 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAK----------------------------------QKRNVLLIGEPGVGKSMLAKAMAEL 60 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHH----------------------------------cCCCEEEECCCCCCHHHHHHHHHHH
Confidence 455569999999999998884 1258999999999999999999988
Q ss_pred hCCC
Q 008176 354 VNVP 357 (575)
Q Consensus 354 l~~~ 357 (575)
++..
T Consensus 61 l~~~ 64 (608)
T TIGR00764 61 LPDE 64 (608)
T ss_pred cCch
Confidence 8543
No 175
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.79 E-value=6.1e-08 Score=105.91 Aligned_cols=132 Identities=21% Similarity=0.298 Sum_probs=73.8
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCC--CEEEeccccccc------------cccccchhh-hHHHHHhhhchhhHHhhc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQ------------AGYVGEDVE-SILYKLLTVSDYNVAAAQ 395 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~--~fv~v~~s~l~~------------sg~vGe~~~-~~l~~lf~~a~~~l~~~~ 395 (575)
++++|+||||||||++|+.+|..+.. .+..+.+..+.+ ...+|.... ..+.+....+... ...
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~--p~~ 272 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQ--PEK 272 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhc--ccC
Confidence 78999999999999999999988743 121222211110 111221111 1222333333211 135
Q ss_pred cCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCC----eecccCCCcccCCCCCcceecCCCEEEEecCCCcC
Q 008176 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT----VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (575)
Q Consensus 396 ~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~----~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d 471 (575)
+.||+||||++...++ +...|+.+||.. ...+|-. .............|+.+|+|.|..|
T Consensus 273 ~~vliIDEINRani~k-------------iFGel~~lLE~~~rg~~~~v~l~---y~e~d~e~f~iP~Nl~IIgTMNt~D 336 (459)
T PRK11331 273 KYVFIIDEINRANLSK-------------VFGEVMMLMEHDKRGENWSVPLT---YSENDEERFYVPENVYIIGLMNTAD 336 (459)
T ss_pred CcEEEEehhhccCHHH-------------hhhhhhhhccccccccccceeee---ccccccccccCCCCeEEEEecCccc
Confidence 7899999999987652 677788888821 1112100 0000011233468999999999988
Q ss_pred -----hHHHHHhhhc
Q 008176 472 -----IEKTISERRQ 481 (575)
Q Consensus 472 -----L~~~i~~rr~ 481 (575)
++.++ +|||
T Consensus 337 rs~~~lD~Al-rRRF 350 (459)
T PRK11331 337 RSLAVVDYAL-RRRF 350 (459)
T ss_pred cchhhccHHH-Hhhh
Confidence 45455 4555
No 176
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.78 E-value=7.7e-08 Score=111.00 Aligned_cols=114 Identities=18% Similarity=0.264 Sum_probs=70.1
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccE-EEEcCCCCChHHHHHHHHHHh-
Q 008176 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNI-LLMGPTGSGKTLLAKTLARYV- 354 (575)
Q Consensus 277 ~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~V-LL~GPpGTGKTtLAraLA~~l- 354 (575)
+.+.|+++.++.|...+...... ..+.++ +++|+||||||++++.+.+.+
T Consensus 755 D~LPhREeEIeeLasfL~paIkg----------------------------sgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ----------------------------SGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc----------------------------CCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45889999999999888522210 012355 599999999999999998665
Q ss_pred ---------CCCEEEeccccccccc---------c------ccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHh
Q 008176 355 ---------NVPFVIADATTLTQAG---------Y------VGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (575)
Q Consensus 355 ---------~~~fv~v~~s~l~~sg---------~------vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~ 410 (575)
...++.++|..+.... + .|......+..+|..... ......||+|||||.+...
T Consensus 807 eeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k--~~r~v~IIILDEID~L~kK 884 (1164)
T PTZ00112 807 HKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKK--DNRNVSILIIDEIDYLITK 884 (1164)
T ss_pred HHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhc--ccccceEEEeehHhhhCcc
Confidence 1456889996644211 0 011111222233322100 0112358999999999765
Q ss_pred hhhcccCCCcchHHHHHHHHHHhh
Q 008176 411 AESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 411 r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
.+..|+.+++
T Consensus 885 --------------~QDVLYnLFR 894 (1164)
T PTZ00112 885 --------------TQKVLFTLFD 894 (1164)
T ss_pred --------------HHHHHHHHHH
Confidence 4666777776
No 177
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.78 E-value=6.6e-08 Score=101.76 Aligned_cols=63 Identities=35% Similarity=0.558 Sum_probs=47.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC--
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~-- 355 (575)
-+|||.+|.++.-..+..- ...+ ...+.+|+.||||||||.||-++|+.+|
T Consensus 40 G~VGQ~~AReAaGvIv~mi-----k~gk----------------------~aGrgiLi~GppgTGKTAlA~gIa~eLG~d 92 (450)
T COG1224 40 GLVGQEEAREAAGVIVKMI-----KQGK----------------------MAGRGILIVGPPGTGKTALAMGIARELGED 92 (450)
T ss_pred cccchHHHHHhhhHHHHHH-----HhCc----------------------ccccEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4799999999876655311 1111 1237899999999999999999999995
Q ss_pred CCEEEecccccc
Q 008176 356 VPFVIADATTLT 367 (575)
Q Consensus 356 ~~fv~v~~s~l~ 367 (575)
.||+.++++++-
T Consensus 93 vPF~~isgsEiY 104 (450)
T COG1224 93 VPFVAISGSEIY 104 (450)
T ss_pred CCceeeccceee
Confidence 688888888743
No 178
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.77 E-value=3.6e-08 Score=93.92 Aligned_cols=130 Identities=28% Similarity=0.388 Sum_probs=77.6
Q ss_pred ChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCC----
Q 008176 281 GQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV---- 356 (575)
Q Consensus 281 Gqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~---- 356 (575)
||+++++.|..++..... ++.+||+||+|+||+++|+++|+.+..
T Consensus 1 gq~~~~~~L~~~~~~~~l-------------------------------~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~ 49 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRL-------------------------------PHALLFHGPSGSGKKTLALAFARALLCSNPN 49 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---------------------------------SEEEEECSTTSSHHHHHHHHHHHHC-TT-C
T ss_pred CcHHHHHHHHHHHHcCCc-------------------------------ceeEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 899999999988851111 245789999999999999999987622
Q ss_pred -------------------CEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccC
Q 008176 357 -------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (575)
Q Consensus 357 -------------------~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~ 417 (575)
++..++...... -++ ...++++.............-|++|||+|.|...
T Consensus 50 ~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~--~i~---i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~------- 117 (162)
T PF13177_consen 50 EDPCGECRSCRRIEEGNHPDFIIIKPDKKKK--SIK---IDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE------- 117 (162)
T ss_dssp TT--SSSHHHHHHHTT-CTTEEEEETTTSSS--SBS---HHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH-------
T ss_pred CCCCCCCHHHHHHHhccCcceEEEecccccc--hhh---HHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH-------
Confidence 122232221100 111 1233333333222112245679999999999987
Q ss_pred CCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecC-CCcChHHHHHhhhc
Q 008176 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGG-AFVDIEKTISERRQ 481 (575)
Q Consensus 418 ~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tg-n~~dL~~~i~~rr~ 481 (575)
.+++||+.||+ ...++.||..+ +...+-..++.|.+
T Consensus 118 -------a~NaLLK~LEe---------------------pp~~~~fiL~t~~~~~il~TI~SRc~ 154 (162)
T PF13177_consen 118 -------AQNALLKTLEE---------------------PPENTYFILITNNPSKILPTIRSRCQ 154 (162)
T ss_dssp -------HHHHHHHHHHS---------------------TTTTEEEEEEES-GGGS-HHHHTTSE
T ss_pred -------HHHHHHHHhcC---------------------CCCCEEEEEEECChHHChHHHHhhce
Confidence 99999999995 22345555444 44446677766543
No 179
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.77 E-value=2.9e-08 Score=86.92 Aligned_cols=76 Identities=28% Similarity=0.416 Sum_probs=50.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCC---EEEeccccccccccc------------cchhhhHHHHHhhhchhhHHhhc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVP---FVIADATTLTQAGYV------------GEDVESILYKLLTVSDYNVAAAQ 395 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~---fv~v~~s~l~~sg~v------------Ge~~~~~l~~lf~~a~~~l~~~~ 395 (575)
.+++|+||||||||++++.+|..+... ++.++++........ ...........++.+.. ..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARK----LK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHh----cC
Confidence 578999999999999999999998764 777887764321100 01112223333333321 23
Q ss_pred cCeEeehhHhhhhHh
Q 008176 396 QGIVYIDEVDKITKK 410 (575)
Q Consensus 396 ~~ILfIDEID~l~~~ 410 (575)
+.+|+|||++.+...
T Consensus 79 ~~viiiDei~~~~~~ 93 (148)
T smart00382 79 PDVLILDEITSLLDA 93 (148)
T ss_pred CCEEEEECCcccCCH
Confidence 589999999998876
No 180
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.77 E-value=6.3e-08 Score=93.51 Aligned_cols=84 Identities=24% Similarity=0.355 Sum_probs=53.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCC------------------------EEEeccccccccccccchhhhHHHHHhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~------------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~ 386 (575)
+.+||+||+|+|||++|+.+++.+... +..+.... +..+ ...++.+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~----~~~~---~~~i~~i~~~ 87 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG----QSIK---VDQVRELVEF 87 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc----CcCC---HHHHHHHHHH
Confidence 468899999999999999999887432 11111110 0111 1223333333
Q ss_pred chhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 387 a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
...........|++|||+|.+... .++.||..||.
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~~--------------~~~~Ll~~le~ 122 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNEA--------------AANALLKTLEE 122 (188)
T ss_pred HccCcccCCeEEEEEechhhhCHH--------------HHHHHHHHhcC
Confidence 222112245679999999999876 79999999983
No 181
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.77 E-value=2.6e-09 Score=98.47 Aligned_cols=91 Identities=32% Similarity=0.614 Sum_probs=63.2
Q ss_pred cChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCC---
Q 008176 280 IGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV--- 356 (575)
Q Consensus 280 vGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~--- 356 (575)
||.+.+++.+...+..- .....+|+|+|++||||+++|++|......
T Consensus 1 vG~S~~~~~l~~~l~~~------------------------------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~ 50 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERL------------------------------AKSSSPVLITGEPGTGKSLLARALHRYSGRANG 50 (138)
T ss_dssp --SCHHHHHHHHHHHHH------------------------------HCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS
T ss_pred CCCCHHHHHHHHHHHHH------------------------------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCC
Confidence 57788888888777510 112368999999999999999999987643
Q ss_pred CEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 357 ~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
+|+.++|.... .+.++. ..+++|||+|+|.+..+ .|..|+..++
T Consensus 51 ~~~~~~~~~~~-------------~~~l~~-------a~~gtL~l~~i~~L~~~--------------~Q~~L~~~l~ 94 (138)
T PF14532_consen 51 PFIVIDCASLP-------------AELLEQ-------AKGGTLYLKNIDRLSPE--------------AQRRLLDLLK 94 (138)
T ss_dssp -CCCCCHHCTC-------------HHHHHH-------CTTSEEEEECGCCS-HH--------------HHHHHHHHHH
T ss_pred CeEEechhhCc-------------HHHHHH-------cCCCEEEECChHHCCHH--------------HHHHHHHHHH
Confidence 45555554322 112222 36889999999999988 8999999998
No 182
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.77 E-value=3.1e-08 Score=108.05 Aligned_cols=126 Identities=19% Similarity=0.320 Sum_probs=79.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEecccccccc----ccccchhhhHHHHHhhhchhhHHhhccCeEeehh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~s----g~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDE 403 (575)
.++++.|++||||+++|+++.... +.+|+.++|..+.+. ...|+. ...+..........+..+.+++|||||
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~gtl~l~e 236 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHE-KGAFTGANTRRQGRFEQADGGTLFLDE 236 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCC-CCCCCCcccCCCCcEEECCCCeEEEEc
Confidence 578999999999999999998775 568999999886431 111211 000000000001112345689999999
Q ss_pred HhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcc
Q 008176 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (575)
Q Consensus 404 ID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~ 482 (575)
|+.+... +|..|+++|+...+.. .+... ....++.+|++++ .++++.+..+.|+
T Consensus 237 i~~l~~~--------------~q~~ll~~l~~~~~~~-------~~~~~---~~~~~~rii~~~~-~~l~~~~~~~~f~ 290 (463)
T TIGR01818 237 IGDMPLD--------------AQTRLLRVLADGEFYR-------VGGRT---PIKVDVRIVAATH-QNLEALVRQGKFR 290 (463)
T ss_pred hhhCCHH--------------HHHHHHHHHhcCcEEE-------CCCCc---eeeeeeEEEEeCC-CCHHHHHHcCCcH
Confidence 9999987 8999999998433211 01001 1123577888876 4677766655554
No 183
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=7e-08 Score=101.94 Aligned_cols=148 Identities=19% Similarity=0.168 Sum_probs=83.9
Q ss_pred ccC-hHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 279 VIG-QERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 279 VvG-qd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
|+| |+.+++.|...+.... -++.+||+||+|+||+++|+++|+.+...
T Consensus 7 i~~~q~~~~~~L~~~~~~~~-------------------------------l~ha~Lf~G~~G~gk~~~a~~la~~l~c~ 55 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNR-------------------------------LSHAYLFEGAKGTGKKATALWLAKSLFCL 55 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 566 9999999998884100 02456899999999999999999886321
Q ss_pred E--EEecc--------------ccccccccccchh-hhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCc
Q 008176 358 F--VIADA--------------TTLTQAGYVGEDV-ESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDV 420 (575)
Q Consensus 358 f--v~v~~--------------s~l~~sg~vGe~~-~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~ 420 (575)
- -...| .++.-....|... ...++++.+............|++|||+|.+..+
T Consensus 56 ~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~---------- 125 (329)
T PRK08058 56 ERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTAS---------- 125 (329)
T ss_pred CCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHH----------
Confidence 0 00000 0110000001110 1223333322111111235579999999999887
Q ss_pred chHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEe-cCCCcChHHHHHhhhcccCCCCCCchhhh
Q 008176 421 SGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFIC-GGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 421 ~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~-tgn~~dL~~~i~~rr~~~~IgF~~p~~e~ 494 (575)
.+|+||+.||+ ..++++||. +.+...+...++.|. ..+.|..+..++
T Consensus 126 ----a~NaLLK~LEE---------------------Pp~~~~~Il~t~~~~~ll~TIrSRc--~~i~~~~~~~~~ 173 (329)
T PRK08058 126 ----AANSLLKFLEE---------------------PSGGTTAILLTENKHQILPTILSRC--QVVEFRPLPPES 173 (329)
T ss_pred ----HHHHHHHHhcC---------------------CCCCceEEEEeCChHhCcHHHHhhc--eeeeCCCCCHHH
Confidence 89999999994 122334443 334444666666554 356666655443
No 184
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.77 E-value=2.9e-08 Score=105.44 Aligned_cols=63 Identities=32% Similarity=0.507 Sum_probs=45.1
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC--
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~-- 355 (575)
.+|||.+|.++.-..+..-.. .+ +..+.+||.||||||||.||-++|+.+|
T Consensus 25 GlVGQ~~AReAagiiv~mIk~-----~K----------------------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~ 77 (398)
T PF06068_consen 25 GLVGQEKAREAAGIIVDMIKE-----GK----------------------IAGRAILIAGPPGTGKTALAMAIAKELGED 77 (398)
T ss_dssp TEES-HHHHHHHHHHHHHHHT-----T------------------------TT-EEEEEE-TTSSHHHHHHHHHHHCTTT
T ss_pred cccChHHHHHHHHHHHHHHhc-----cc----------------------ccCcEEEEeCCCCCCchHHHHHHHHHhCCC
Confidence 579999999998877742111 11 1236899999999999999999999996
Q ss_pred CCEEEecccccc
Q 008176 356 VPFVIADATTLT 367 (575)
Q Consensus 356 ~~fv~v~~s~l~ 367 (575)
.||+.++++++-
T Consensus 78 ~PF~~isgSEiy 89 (398)
T PF06068_consen 78 VPFVSISGSEIY 89 (398)
T ss_dssp S-EEEEEGGGG-
T ss_pred CCeeEcccceee
Confidence 788888888754
No 185
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=8.3e-08 Score=100.95 Aligned_cols=46 Identities=28% Similarity=0.395 Sum_probs=38.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
.|+||+++++.+..++.... -++.+||+||+|+||+++|+++|+.+
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r-------------------------------l~ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR-------------------------------IAPAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999985111 02678899999999999999999886
No 186
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.75 E-value=6.7e-08 Score=95.93 Aligned_cols=70 Identities=21% Similarity=0.321 Sum_probs=51.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l 407 (575)
.+++|+||+|||||+||+++++.. +.+++.+++.++... +.. .....+|+|||+|.+
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~--------------~~~------~~~~~~liiDdi~~l 102 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA--------------FDF------DPEAELYAVDDVERL 102 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH--------------Hhh------cccCCEEEEeChhhc
Confidence 578999999999999999999875 557777777554310 000 124569999999988
Q ss_pred hHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
... .+..|+.+++
T Consensus 103 ~~~--------------~~~~L~~~~~ 115 (227)
T PRK08903 103 DDA--------------QQIALFNLFN 115 (227)
T ss_pred Cch--------------HHHHHHHHHH
Confidence 654 5777888886
No 187
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.74 E-value=3.9e-08 Score=107.01 Aligned_cols=130 Identities=19% Similarity=0.326 Sum_probs=83.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEecccccccc----ccccchhhhHHHHHhhhchhhHHhhccCeEeehh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~s----g~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDE 403 (575)
.++++.|++||||+++|+++.... +.+|+.++|..+.+. .+.|.. ...+..........+..+.+++|||||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~gtl~ld~ 245 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHE-KGAFTGAQTLRQGLFERANEGTLLLDE 245 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCC-CCCCCCCCCCCCCceEECCCCEEEEec
Confidence 689999999999999999998664 578999999886531 011110 000000000001123345789999999
Q ss_pred HhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhccc
Q 008176 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (575)
Q Consensus 404 ID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~ 483 (575)
|+.+... +|..|+.+++...+.- .+... ....++.+|++++ .++++++.++.|..
T Consensus 246 i~~l~~~--------------~q~~L~~~l~~~~~~~-------~~~~~---~~~~~~rii~~t~-~~l~~~~~~g~~~~ 300 (457)
T PRK11361 246 IGEMPLV--------------LQAKLLRILQEREFER-------IGGHQ---TIKVDIRIIAATN-RDLQAMVKEGTFRE 300 (457)
T ss_pred hhhCCHH--------------HHHHHHHHHhcCcEEe-------CCCCc---eeeeceEEEEeCC-CCHHHHHHcCCchH
Confidence 9999988 8999999998543221 01111 1234578888887 47777777776655
Q ss_pred CCC
Q 008176 484 SIG 486 (575)
Q Consensus 484 ~Ig 486 (575)
.+.
T Consensus 301 ~l~ 303 (457)
T PRK11361 301 DLF 303 (457)
T ss_pred HHH
Confidence 443
No 188
>PRK15115 response regulator GlrR; Provisional
Probab=98.72 E-value=9.4e-08 Score=103.87 Aligned_cols=132 Identities=19% Similarity=0.306 Sum_probs=84.8
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccccccchhhhHHHHHhhh----chhhHHhhccCeEeehh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTV----SDYNVAAAQQGIVYIDE 403 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~----a~~~l~~~~~~ILfIDE 403 (575)
.++++.|++|||||++|+++.+.. +.+|+.++|..+.+. +............+.. ....+..+.+++|||||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~-~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 236 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQ-LLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHH-HHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEc
Confidence 578999999999999999998775 578999999886431 1100000000001110 11123345689999999
Q ss_pred HhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhccc
Q 008176 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (575)
Q Consensus 404 ID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~ 483 (575)
|+.++.. +|..|+..|+...+.- .+... ....++.+|++++. ++++.+.++.|..
T Consensus 237 i~~l~~~--------------~q~~L~~~l~~~~~~~-------~g~~~---~~~~~~rii~~~~~-~l~~~~~~~~f~~ 291 (444)
T PRK15115 237 IGDMPAP--------------LQVKLLRVLQERKVRP-------LGSNR---DIDIDVRIISATHR-DLPKAMARGEFRE 291 (444)
T ss_pred cccCCHH--------------HHHHHHHHHhhCCEEe-------CCCCc---eeeeeEEEEEeCCC-CHHHHHHcCCccH
Confidence 9999988 8999999998433210 11111 11236888888874 6888888777765
Q ss_pred CCCCC
Q 008176 484 SIGFG 488 (575)
Q Consensus 484 ~IgF~ 488 (575)
.+.|.
T Consensus 292 ~l~~~ 296 (444)
T PRK15115 292 DLYYR 296 (444)
T ss_pred HHHHh
Confidence 55443
No 189
>PRK08727 hypothetical protein; Validated
Probab=98.70 E-value=9.8e-08 Score=95.98 Aligned_cols=75 Identities=24% Similarity=0.301 Sum_probs=46.7
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhh
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~ 408 (575)
.++|+||+|||||+|+++++..+ +.....++..++. ..+.+.+.. .....+|+|||++.+.
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~----------~~~~~~~~~------l~~~dlLiIDDi~~l~ 106 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA----------GRLRDALEA------LEGRSLVALDGLESIA 106 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh----------hhHHHHHHH------HhcCCEEEEeCccccc
Confidence 48899999999999999998765 4444445443322 111111111 1234599999999886
Q ss_pred HhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 409 KKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 409 ~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
.... .+..|+.+++
T Consensus 107 ~~~~------------~~~~lf~l~n 120 (233)
T PRK08727 107 GQRE------------DEVALFDFHN 120 (233)
T ss_pred CChH------------HHHHHHHHHH
Confidence 4321 3556666666
No 190
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.69 E-value=2.5e-08 Score=111.31 Aligned_cols=138 Identities=22% Similarity=0.373 Sum_probs=98.9
Q ss_pred ccCccEEEEcCCCCChHHHHHHHHHHh--CCCEEEeccccccc----cccccchhhhHHHHHhhh-chhhHHhhccCeEe
Q 008176 328 LEKSNILLMGPTGSGKTLLAKTLARYV--NVPFVIADATTLTQ----AGYVGEDVESILYKLLTV-SDYNVAAAQQGIVY 400 (575)
Q Consensus 328 i~~~~VLL~GPpGTGKTtLAraLA~~l--~~~fv~v~~s~l~~----sg~vGe~~~~~l~~lf~~-a~~~l~~~~~~ILf 400 (575)
....++++.|+|||||-.+||++.... ..||+.++|..+.+ +.+.|.. ...++..+.. ....+..++++.+|
T Consensus 334 ~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~-~GafTga~~kG~~g~~~~A~gGtlF 412 (606)
T COG3284 334 ATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYV-AGAFTGARRKGYKGKLEQADGGTLF 412 (606)
T ss_pred hcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccC-ccccccchhccccccceecCCCccH
Confidence 345689999999999999999997554 67899999988653 2333332 1111211111 11245567899999
Q ss_pred ehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhh
Q 008176 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (575)
Q Consensus 401 IDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr 480 (575)
+|||..|+-. .|..||++|+++.|. |=.| .. +.+| |.+|++|+ .||..+++.++
T Consensus 413 ldeIgd~p~~--------------~Qs~LLrVl~e~~v~-p~g~------~~-~~vd---irvi~ath-~dl~~lv~~g~ 466 (606)
T COG3284 413 LDEIGDMPLA--------------LQSRLLRVLQEGVVT-PLGG------TR-IKVD---IRVIAATH-RDLAQLVEQGR 466 (606)
T ss_pred HHHhhhchHH--------------HHHHHHHHHhhCcee-ccCC------cc-eeEE---EEEEeccC-cCHHHHHHcCC
Confidence 9999999987 999999999966553 2111 12 4455 88899887 68999999999
Q ss_pred cccCCCCCCchh
Q 008176 481 QDSSIGFGAPVR 492 (575)
Q Consensus 481 ~~~~IgF~~p~~ 492 (575)
|+..+.|.+...
T Consensus 467 fredLyyrL~~~ 478 (606)
T COG3284 467 FREDLYYRLNAF 478 (606)
T ss_pred chHHHHHHhcCe
Confidence 999888876543
No 191
>PRK06893 DNA replication initiation factor; Validated
Probab=98.68 E-value=1.5e-07 Score=94.42 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=46.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l 407 (575)
+.++|+||||||||+|++++|+.+ +.....++..... . ...+.+... ....+|+|||++.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~---~-------~~~~~~~~~------~~~dlLilDDi~~~ 103 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ---Y-------FSPAVLENL------EQQDLVCLDDLQAV 103 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh---h-------hhHHHHhhc------ccCCEEEEeChhhh
Confidence 346899999999999999999876 2333434432211 0 001111111 23469999999998
Q ss_pred hHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
..+.. .+..|+.+++
T Consensus 104 ~~~~~------------~~~~l~~l~n 118 (229)
T PRK06893 104 IGNEE------------WELAIFDLFN 118 (229)
T ss_pred cCChH------------HHHHHHHHHH
Confidence 64421 3556777766
No 192
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.66 E-value=1.2e-07 Score=104.17 Aligned_cols=85 Identities=18% Similarity=0.363 Sum_probs=52.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh-----CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l-----~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID 405 (575)
..++|+||+|+|||+|++++++.+ +..++.+++.++.. .++..-..... ..|.. ......+|+|||++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~-~~~~~~~~~~~-~~~~~-----~~~~~dlLiiDDi~ 221 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN-DFVNALRNNTM-EEFKE-----KYRSVDVLLIDDIQ 221 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHHHcCcH-HHHHH-----HHhcCCEEEEehhh
Confidence 468899999999999999999887 44567777766542 11111000000 01110 11245699999999
Q ss_pred hhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 406 ~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
.+..++ ..++.|+..++
T Consensus 222 ~l~~~~------------~~~~~l~~~~n 238 (450)
T PRK00149 222 FLAGKE------------RTQEEFFHTFN 238 (450)
T ss_pred hhcCCH------------HHHHHHHHHHH
Confidence 986542 14666666665
No 193
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.66 E-value=1.7e-07 Score=101.36 Aligned_cols=85 Identities=16% Similarity=0.318 Sum_probs=52.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh-----CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l-----~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID 405 (575)
..++|+||+|+|||+|++++++.+ +..++.+++.++.. .++..-....... |.. ......+|+|||++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~-~~~~~~~~~~~~~-~~~-----~~~~~dlLiiDDi~ 209 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN-DFVNALRNNKMEE-FKE-----KYRSVDLLLIDDIQ 209 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH-HHHHHHHcCCHHH-HHH-----HHHhCCEEEEehhh
Confidence 467899999999999999999876 45677777766432 1111100000000 100 01234699999999
Q ss_pred hhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 406 ~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
.+.... ..+..|+..++
T Consensus 210 ~l~~~~------------~~~~~l~~~~n 226 (405)
T TIGR00362 210 FLAGKE------------RTQEEFFHTFN 226 (405)
T ss_pred hhcCCH------------HHHHHHHHHHH
Confidence 986542 15666777666
No 194
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.65 E-value=5.1e-07 Score=102.11 Aligned_cols=84 Identities=14% Similarity=0.314 Sum_probs=52.7
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh-----CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhh
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l-----~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~ 406 (575)
.++|+|++|+|||+|++++++.+ +..++.+++.++.. .++..-.... .+.|... -....+|+||||+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~-el~~al~~~~-~~~f~~~-----y~~~DLLlIDDIq~ 388 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN-EFINSIRDGK-GDSFRRR-----YREMDILLVDDIQF 388 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HHHHHHHhcc-HHHHHHH-----hhcCCEEEEehhcc
Confidence 48899999999999999999876 45677777766542 1221100000 1111110 12456999999999
Q ss_pred hhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 407 ITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 407 l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
+..+. ..+..|+.+++
T Consensus 389 l~gke------------~tqeeLF~l~N 404 (617)
T PRK14086 389 LEDKE------------STQEEFFHTFN 404 (617)
T ss_pred ccCCH------------HHHHHHHHHHH
Confidence 86542 14566777666
No 195
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.64 E-value=5.5e-07 Score=93.21 Aligned_cols=211 Identities=21% Similarity=0.288 Sum_probs=118.7
Q ss_pred ChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEE-EEcCCCCChHH
Q 008176 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNIL-LMGPTGSGKTL 345 (575)
Q Consensus 267 t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VL-L~GPpGTGKTt 345 (575)
....++..|+..+.||.-|++.+..++..|+..-. ..+.-+| |+|+|||||..
T Consensus 72 ~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~--------------------------p~KPLvLSfHG~tGTGKN~ 125 (344)
T KOG2170|consen 72 DLDGLEKDLARALFGQHLAKQLVVNALKSHWANPN--------------------------PRKPLVLSFHGWTGTGKNY 125 (344)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCC--------------------------CCCCeEEEecCCCCCchhH
Confidence 35678999999999999999999999976665210 1123344 99999999999
Q ss_pred HHHHHHHHhC-----CCEEE--eccccccccccccchhhhHHH-HHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccC
Q 008176 346 LAKTLARYVN-----VPFVI--ADATTLTQAGYVGEDVESILY-KLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (575)
Q Consensus 346 LAraLA~~l~-----~~fv~--v~~s~l~~sg~vGe~~~~~l~-~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~ 417 (575)
+++.||+.+- .+++. +.-..+-...++ ...+ ++-..-...+.+.+.+|.++||+|+|++.
T Consensus 126 Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~i-----e~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~g------- 193 (344)
T KOG2170|consen 126 VAEIIAENLYRGGLRSPFVHHFVATLHFPHASKI-----EDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPG------- 193 (344)
T ss_pred HHHHHHHHHHhccccchhHHHhhhhccCCChHHH-----HHHHHHHHHHHHHHHHhcCCceEEechhhhcCHh-------
Confidence 9999998762 22211 000001101111 1111 11111122344568899999999999887
Q ss_pred CCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC--hHHHHH----hhhcccCCCCCCch
Q 008176 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD--IEKTIS----ERRQDSSIGFGAPV 491 (575)
Q Consensus 418 ~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d--L~~~i~----~rr~~~~IgF~~p~ 491 (575)
+.++|--.+|-. +. .--++..+.+||.-+|... +.+.+. .++..+.+++..-+
T Consensus 194 -------Lld~lkpfLdyy------------p~--v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E 252 (344)
T KOG2170|consen 194 -------LLDVLKPFLDYY------------PQ--VSGVDFRKAIFIFLSNAGGSEIARIALENARNGKPREQLRLKSFE 252 (344)
T ss_pred -------HHHHHhhhhccc------------cc--cccccccceEEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhh
Confidence 788888888711 00 0114566677777665443 333222 22222222221111
Q ss_pred hhhhccCCCChHHHHHHHHhhhcchhhhhcCCC-Cccc--cccceEEEcCCCCHHHHHHHHhhhH
Q 008176 492 RANMRAGGVTDAVVTSSLMETVESSDLIAYGLI-PEFV--GRFPVLVSLLALTENQLVQVLTEPK 553 (575)
Q Consensus 492 ~e~~~~~~l~~~~~~~~ll~~l~~~dl~~~gl~-Pefi--~Rf~~ii~~~~LsedeL~eIl~e~l 553 (575)
..++.....+ ...|+. .+++ .+++..|+|.+++...++..+...+
T Consensus 253 ---------------~~L~~~~~n~--~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el 300 (344)
T KOG2170|consen 253 ---------------PALMQSAFNE--KAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAEL 300 (344)
T ss_pred ---------------HHHHHhhhcc--ccccccccccchhhHHhhccCcCcccHHHHHHHHHHHH
Confidence 1111111111 112222 2333 3367889999999999998887544
No 196
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=9.6e-08 Score=107.35 Aligned_cols=144 Identities=24% Similarity=0.323 Sum_probs=97.2
Q ss_pred cccCccEEEEcCCCCChHHHHHHHHHHhCC----CEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeeh
Q 008176 327 ELEKSNILLMGPTGSGKTLLAKTLARYVNV----PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYID 402 (575)
Q Consensus 327 ~i~~~~VLL~GPpGTGKTtLAraLA~~l~~----~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfID 402 (575)
.+..+++||.||+|+|||.|++++++++.. .+..++|+.+.... -+.+.+.+...|..+-+ ..|+||+||
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~--~e~iQk~l~~vfse~~~----~~PSiIvLD 501 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS--LEKIQKFLNNVFSEALW----YAPSIIVLD 501 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh--HHHHHHHHHHHHHHHHh----hCCcEEEEc
Confidence 456789999999999999999999998853 46778998876533 22234455556655543 689999999
Q ss_pred hHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHH-HHHhhh
Q 008176 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEK-TISERR 480 (575)
Q Consensus 403 EID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~-~i~~rr 480 (575)
++|.+.......+++.....++....|.+++..+. -+.+.+.+|++++... +.+ +...++
T Consensus 502 dld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~------------------~~~~~ia~Iat~qe~qtl~~~L~s~~~ 563 (952)
T KOG0735|consen 502 DLDCLASASSNENGQDGVVSERLAAFLNQVIKIYL------------------KRNRKIAVIATGQELQTLNPLLVSPLL 563 (952)
T ss_pred chhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH------------------ccCcEEEEEEechhhhhcChhhcCccc
Confidence 99999885444444555555555555556665211 1223367888886543 322 345567
Q ss_pred cccCCCCCCchhhh
Q 008176 481 QDSSIGFGAPVRAN 494 (575)
Q Consensus 481 ~~~~IgF~~p~~e~ 494 (575)
|+..+..++|..++
T Consensus 564 Fq~~~~L~ap~~~~ 577 (952)
T KOG0735|consen 564 FQIVIALPAPAVTR 577 (952)
T ss_pred eEEEEecCCcchhH
Confidence 88888888888765
No 197
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.62 E-value=1.9e-07 Score=106.50 Aligned_cols=47 Identities=36% Similarity=0.628 Sum_probs=38.8
Q ss_pred hcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 275 Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
+-+.|+||+++++.|..++. ...+++|+||||||||++|+++++.+
T Consensus 29 ~~~~vigq~~a~~~L~~~~~----------------------------------~~~~~l~~G~~G~GKttla~~l~~~l 74 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAK----------------------------------QRRHVMMIGSPGTGKSMLAKAMAELL 74 (637)
T ss_pred cHHHcCChHHHHHHHHHHHH----------------------------------hCCeEEEECCCCCcHHHHHHHHHHHc
Confidence 33458999999999988774 12579999999999999999999766
Q ss_pred C
Q 008176 355 N 355 (575)
Q Consensus 355 ~ 355 (575)
.
T Consensus 75 ~ 75 (637)
T PRK13765 75 P 75 (637)
T ss_pred C
Confidence 3
No 198
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.61 E-value=7e-08 Score=114.65 Aligned_cols=154 Identities=23% Similarity=0.266 Sum_probs=108.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccc-cccccchh--hhHHHHHhhhchhhHHhhccCeEeehhHhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGEDV--ESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~-sg~vGe~~--~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l 407 (575)
+++||.|.||+|||+|..++|+..|..+++++.++-+. .+++|.+. +.--.=.+..+++..+...++.|++||++..
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLa 1623 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLA 1623 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhh
Confidence 57999999999999999999999999999999988443 12333221 0000001223444445568899999999998
Q ss_pred hHhhhhcccCCCcchHHHHHHHHHHhh-CCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCC
Q 008176 408 TKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (575)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~aLL~~LE-g~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~Ig 486 (575)
..+ |...|...+| .+...|||-...+..|.++ ++.++-|+.+
T Consensus 1624 SQS--------------VlEGLNacLDhR~eayIPEld~~f~~Hpnf--------rVFAaqNPq~--------------- 1666 (4600)
T COG5271 1624 SQS--------------VLEGLNACLDHRREAYIPELDKTFDVHPNF--------RVFAAQNPQD--------------- 1666 (4600)
T ss_pred HHH--------------HHHHHHHHHhhccccccccccceeeccCCe--------eeeeecCchh---------------
Confidence 776 9999999999 5567788877666665544 4444444321
Q ss_pred CCCchhhhhccCCCChHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhh
Q 008176 487 FGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTE 551 (575)
Q Consensus 487 F~~p~~e~~~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e 551 (575)
+. =...|+...|++||.+ +.++.|+++|+..|+..
T Consensus 1667 ------qg-----------------------gGRKgLPkSF~nRFsv-V~~d~lt~dDi~~Ia~~ 1701 (4600)
T COG5271 1667 ------QG-----------------------GGRKGLPKSFLNRFSV-VKMDGLTTDDITHIANK 1701 (4600)
T ss_pred ------cC-----------------------CCcccCCHHHhhhhhe-EEecccccchHHHHHHh
Confidence 00 0123577889999975 77899999999999763
No 199
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=3.7e-07 Score=96.61 Aligned_cols=122 Identities=21% Similarity=0.263 Sum_probs=73.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCC------------------------EEEeccccccccccccchhhhHHHHHhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~------------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~ 386 (575)
+.+||+||+|+|||++|+++|+.+.+. +..+....- ...++ ...++++.+.
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~--~~~i~---id~iR~l~~~ 97 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA--DKTIK---VDQVRELVSF 97 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC--CCCCC---HHHHHHHHHH
Confidence 568899999999999999999887431 121211100 00111 1234444333
Q ss_pred chhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEec
Q 008176 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (575)
Q Consensus 387 a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~t 466 (575)
...........|++|||+|++... .+|+||+.||+ ...+++||.+
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~~--------------aaNaLLK~LEE---------------------Pp~~~~fiL~ 142 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNRN--------------AANALLKSLEE---------------------PSGDTVLLLI 142 (328)
T ss_pred HhhccccCCCeEEEECChhhCCHH--------------HHHHHHHHHhC---------------------CCCCeEEEEE
Confidence 221112245668999999999987 89999999995 1223445554
Q ss_pred CCCc-ChHHHHHhhhcccCCCCCCchhhh
Q 008176 467 GAFV-DIEKTISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 467 gn~~-dL~~~i~~rr~~~~IgF~~p~~e~ 494 (575)
++.. .+...++.|.. .+.|..|..++
T Consensus 143 t~~~~~ll~TI~SRc~--~~~~~~~~~~~ 169 (328)
T PRK05707 143 SHQPSRLLPTIKSRCQ--QQACPLPSNEE 169 (328)
T ss_pred ECChhhCcHHHHhhce--eeeCCCcCHHH
Confidence 4433 46666666543 36666665443
No 200
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.61 E-value=3.2e-08 Score=104.68 Aligned_cols=156 Identities=19% Similarity=0.283 Sum_probs=82.8
Q ss_pred HHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHH
Q 008176 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (575)
Q Consensus 271 l~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraL 350 (575)
+...+...|.|.+.+|..+...+..... ...+ ++.. ....-|+||+|.||+|||.|.+.+
T Consensus 18 l~~s~aP~i~g~~~iK~aill~L~~~~~-------~~~~------------~~~~-~r~~ihiLlvGdpg~gKS~ll~~~ 77 (331)
T PF00493_consen 18 LANSIAPSIYGHEDIKKAILLQLFGGVE-------KNDP------------DGTR-IRGNIHILLVGDPGTGKSQLLKYV 77 (331)
T ss_dssp CHHHCSSTTTT-HHHHHHHCCCCTT--S-------CCCC------------T-TE-E--S--EEEECSCHHCHHHHHHCC
T ss_pred HHHHhCCcCcCcHHHHHHHHHHHHhccc-------cccc------------cccc-cccccceeeccchhhhHHHHHHHH
Confidence 5556667899999999887755531000 0000 0000 122369999999999999999988
Q ss_pred HHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHH
Q 008176 351 ARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (575)
Q Consensus 351 A~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL 430 (575)
++..... +.+++......|+...-.......-+......+..+++||++|||+|++... .+++|+
T Consensus 78 ~~~~pr~-v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~--------------~~~~l~ 142 (331)
T PF00493_consen 78 AKLAPRS-VYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKED--------------DRDALH 142 (331)
T ss_dssp CCT-SSE-EEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CH--------------HHHHHH
T ss_pred HhhCCce-EEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccch--------------HHHHHH
Confidence 7665433 3444444332222111000000000111112234578999999999999876 789999
Q ss_pred HHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCC
Q 008176 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (575)
Q Consensus 431 ~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~ 469 (575)
++||..+++|...|. ......+..+++++|+
T Consensus 143 eaMEqq~isi~kagi--------~~~l~ar~svlaa~NP 173 (331)
T PF00493_consen 143 EAMEQQTISIAKAGI--------VTTLNARCSVLAAANP 173 (331)
T ss_dssp HHHHCSCEEECTSSS--------EEEEE---EEEEEE--
T ss_pred HHHHcCeeccchhhh--------cccccchhhhHHHHhh
Confidence 999988888744331 1223345667788775
No 201
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.61 E-value=3.2e-07 Score=91.65 Aligned_cols=82 Identities=21% Similarity=0.363 Sum_probs=52.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh-----CCCEEEeccccccccccccc---hhhhHHHHHhhhchhhHHhhccCeEeeh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGE---DVESILYKLLTVSDYNVAAAQQGIVYID 402 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l-----~~~fv~v~~s~l~~sg~vGe---~~~~~l~~lf~~a~~~l~~~~~~ILfID 402 (575)
..++|+||+|+|||.|.+++++.+ +..++.+++.++... +... .....+.+.+ ..-.+|+||
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~-~~~~~~~~~~~~~~~~~---------~~~DlL~iD 104 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE-FADALRDGEIEEFKDRL---------RSADLLIID 104 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH-HHHHHHTTSHHHHHHHH---------CTSSEEEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH-HHHHHHcccchhhhhhh---------hcCCEEEEe
Confidence 357899999999999999998765 455677776654421 1100 0001111111 234599999
Q ss_pred hHhhhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 403 EID~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
+++.+..+. ..|..|..+++
T Consensus 105 Di~~l~~~~------------~~q~~lf~l~n 124 (219)
T PF00308_consen 105 DIQFLAGKQ------------RTQEELFHLFN 124 (219)
T ss_dssp TGGGGTTHH------------HHHHHHHHHHH
T ss_pred cchhhcCch------------HHHHHHHHHHH
Confidence 999997652 26788888887
No 202
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.58 E-value=2.1e-07 Score=104.31 Aligned_cols=153 Identities=18% Similarity=0.278 Sum_probs=89.0
Q ss_pred HHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHH
Q 008176 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (575)
Q Consensus 271 l~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraL 350 (575)
+...+...|.|.+.+|+.|...+. .+.+.....+ + ++ ...-|+||+|.||||||-|.+.+
T Consensus 423 La~SiAPsIye~edvKkglLLqLf-------GGt~k~~~~~--~----------~~-R~~INILL~GDPGtsKSqlLqyv 482 (804)
T KOG0478|consen 423 LARSIAPSIYELEDVKKGLLLQLF-------GGTRKEDEKS--G----------RF-RGDINILLVGDPGTSKSQLLQYC 482 (804)
T ss_pred HHHhhchhhhcccchhhhHHHHHh-------cCCccccccc--c----------cc-cccceEEEecCCCcCHHHHHHHH
Confidence 334444568888888888776663 1111110000 0 00 11258999999999999999999
Q ss_pred HHHhCCCEEEeccccccccc---cccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHH
Q 008176 351 ARYVNVPFVIADATTLTQAG---YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (575)
Q Consensus 351 A~~l~~~fv~v~~s~l~~sg---~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~ 427 (575)
++.+..-.+ .++..-.+.| |+-.+. .-+++.-+ ...+-...+||-.|||+|+|..+ .++
T Consensus 483 ~~l~pRg~y-TSGkGsSavGLTayVtrd~--dtkqlVLe-sGALVLSD~GiCCIDEFDKM~dS--------------trS 544 (804)
T KOG0478|consen 483 HRLLPRGVY-TSGKGSSAVGLTAYVTKDP--DTRQLVLE-SGALVLSDNGICCIDEFDKMSDS--------------TRS 544 (804)
T ss_pred HHhCCccee-ecCCccchhcceeeEEecC--ccceeeee-cCcEEEcCCceEEchhhhhhhHH--------------HHH
Confidence 998854432 2221100000 221110 00111111 11233467899999999999877 899
Q ss_pred HHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCC
Q 008176 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (575)
Q Consensus 428 aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~ 469 (575)
.|+++||..+++|+..|..... ..+.-++++.|.
T Consensus 545 vLhEvMEQQTvSIAKAGII~sL--------NAR~SVLAaANP 578 (804)
T KOG0478|consen 545 VLHEVMEQQTLSIAKAGIIASL--------NARCSVLAAANP 578 (804)
T ss_pred HHHHHHHHhhhhHhhcceeeec--------cccceeeeeecc
Confidence 9999999989998766643322 223445666664
No 203
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=6.5e-07 Score=96.14 Aligned_cols=62 Identities=24% Similarity=0.285 Sum_probs=47.5
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC-
Q 008176 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (575)
Q Consensus 279 VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~- 357 (575)
+.+.++.++.+...+...+.. ..+.+++++|+||||||.+++.+++.+...
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~----------------------------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~ 70 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG----------------------------ERPSNIIIYGPTGTGKTATVKFVMEELEESS 70 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcC----------------------------CCCccEEEECCCCCCHhHHHHHHHHHHHhhh
Confidence 688899999988887522220 123579999999999999999999888433
Q ss_pred ----EEEeccccccc
Q 008176 358 ----FVIADATTLTQ 368 (575)
Q Consensus 358 ----fv~v~~s~l~~ 368 (575)
++.+||.....
T Consensus 71 ~~~~~~yINc~~~~t 85 (366)
T COG1474 71 ANVEVVYINCLELRT 85 (366)
T ss_pred ccCceEEEeeeeCCC
Confidence 78999987653
No 204
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.54 E-value=1.8e-07 Score=105.86 Aligned_cols=99 Identities=14% Similarity=0.192 Sum_probs=70.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCC--CEEEeccccccccccccc-hhhhHHHHHhh-hchhhHHhhccCeEeehhHhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQAGYVGE-DVESILYKLLT-VSDYNVAAAQQGIVYIDEVDK 406 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~--~fv~v~~s~l~~sg~vGe-~~~~~l~~lf~-~a~~~l~~~~~~ILfIDEID~ 406 (575)
++|||.|+.|++|++++++++..+.. ||+.+..+.-. ..++|. +++..+..--. .....+..++++||||||++.
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~-~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~ 104 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIAD-DRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAER 104 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcH-HHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCccc
Confidence 78999999999999999999999854 77655544322 334543 22222222111 123345678899999999999
Q ss_pred hhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCC
Q 008176 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKG 444 (575)
Q Consensus 407 l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g 444 (575)
+.++ ++++|++.||.+.+.|...|
T Consensus 105 ~~~~--------------~~~aLleame~G~vtIeR~G 128 (584)
T PRK13406 105 LEPG--------------TAARLAAALDTGEVRLERDG 128 (584)
T ss_pred CCHH--------------HHHHHHHHHhCCcEEEEECC
Confidence 9988 99999999998877774333
No 205
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.51 E-value=3.7e-07 Score=104.10 Aligned_cols=156 Identities=17% Similarity=0.245 Sum_probs=89.1
Q ss_pred HHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHH
Q 008176 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (575)
Q Consensus 271 l~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraL 350 (575)
+...+...|.|.+.+|+.+.-++.--..+.. .++ ..+ -..-|+||+|.||||||.|.+.+
T Consensus 280 l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~--------------~~g-----~~i-RGDInILLvGDPgtaKSqlLk~v 339 (682)
T COG1241 280 LIKSIAPSIYGHEDVKKAILLQLFGGVKKNL--------------PDG-----TRI-RGDIHILLVGDPGTAKSQLLKYV 339 (682)
T ss_pred HHHHhcccccCcHHHHHHHHHHhcCCCcccC--------------CCC-----ccc-ccceeEEEcCCCchhHHHHHHHH
Confidence 3344455789999999998877741111000 000 000 11259999999999999999999
Q ss_pred HHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHH
Q 008176 351 ARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (575)
Q Consensus 351 A~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL 430 (575)
++..-..++ .++..-...|+...........-+......+..+++||+.|||+|+|... -+.+|.
T Consensus 340 ~~~aPr~vy-tsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~--------------dr~aih 404 (682)
T COG1241 340 AKLAPRGVY-TSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEE--------------DRVAIH 404 (682)
T ss_pred HhhCCceEE-EccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChH--------------HHHHHH
Confidence 988754433 22222111111111000000000111112233478999999999999876 789999
Q ss_pred HHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCC
Q 008176 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (575)
Q Consensus 431 ~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~ 469 (575)
++||..++++...|.. .......-++++.|.
T Consensus 405 EaMEQQtIsIaKAGI~--------atLnARcsvLAAaNP 435 (682)
T COG1241 405 EAMEQQTISIAKAGIT--------ATLNARCSVLAAANP 435 (682)
T ss_pred HHHHhcEeeeccccee--------eecchhhhhhhhhCC
Confidence 9999888887443311 122233555666664
No 206
>PRK05642 DNA replication initiation factor; Validated
Probab=98.51 E-value=4.1e-07 Score=91.62 Aligned_cols=76 Identities=28% Similarity=0.371 Sum_probs=49.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l 407 (575)
.+++|+||+|+|||+|++++++.+ +...+.++..++... ...+.+.+. ...+|+||+++.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~-------~~~~~~~~~---------~~d~LiiDDi~~~ 109 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR-------GPELLDNLE---------QYELVCLDDLDVI 109 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh-------hHHHHHhhh---------hCCEEEEechhhh
Confidence 468899999999999999998764 455666666554421 011111111 2248999999988
Q ss_pred hHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
..+.. .+..|+.+++
T Consensus 110 ~~~~~------------~~~~Lf~l~n 124 (234)
T PRK05642 110 AGKAD------------WEEALFHLFN 124 (234)
T ss_pred cCChH------------HHHHHHHHHH
Confidence 64311 4566777776
No 207
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.49 E-value=8.3e-07 Score=97.44 Aligned_cols=86 Identities=22% Similarity=0.379 Sum_probs=50.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh-----CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l-----~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID 405 (575)
.+++|+||+|+|||+|++++++.+ +..++.+++.++.. .+...-......+ |.. .......+|+|||++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~-~~~~~~~~~~~~~-f~~----~~~~~~dvLlIDDi~ 204 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN-DLVDSMKEGKLNE-FRE----KYRKKVDVLLIDDVQ 204 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHHhcccHHH-HHH----HHHhcCCEEEEechh
Confidence 368899999999999999999876 34566677665432 1110000000001 110 001246799999999
Q ss_pred hhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 406 ~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
.+.... ..|..|+..++
T Consensus 205 ~l~~~~------------~~q~elf~~~n 221 (440)
T PRK14088 205 FLIGKT------------GVQTELFHTFN 221 (440)
T ss_pred hhcCcH------------HHHHHHHHHHH
Confidence 885431 14556666665
No 208
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.46 E-value=7.3e-07 Score=96.51 Aligned_cols=130 Identities=18% Similarity=0.337 Sum_probs=81.6
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccc----cccchhhhHHHHHhhhchhhHHhhccCeEeeh
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAG----YVGEDVESILYKLLTVSDYNVAAAQQGIVYID 402 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg----~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfID 402 (575)
...++++|++||||+++|+++.... +.+|+.++|..+.+.. +.|.. ...+..........+..+.+|+||||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~gtl~ld 240 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHE-KGAFTGADKRREGRFVEADGGTLFLD 240 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCC-CCCcCCCCcCCCCceeECCCCEEEEe
Confidence 3678999999999999999998665 5789999998765310 11110 00000000000112334678999999
Q ss_pred hHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcc
Q 008176 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (575)
Q Consensus 403 EID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~ 482 (575)
||+.+... +|..|+..++...+.- .+... . ...++.+|++++. ++.+.+..++|+
T Consensus 241 ei~~l~~~--------------~q~~l~~~l~~~~~~~-------~~~~~--~-~~~~~rii~~t~~-~~~~~~~~~~~~ 295 (441)
T PRK10365 241 EIGDISPM--------------MQVRLLRAIQEREVQR-------VGSNQ--T-ISVDVRLIAATHR-DLAAEVNAGRFR 295 (441)
T ss_pred ccccCCHH--------------HHHHHHHHHccCcEEe-------CCCCc--e-eeeceEEEEeCCC-CHHHHHHcCCch
Confidence 99999988 8999999998543321 11111 1 1235778887764 677777766665
Q ss_pred cCC
Q 008176 483 SSI 485 (575)
Q Consensus 483 ~~I 485 (575)
..+
T Consensus 296 ~~l 298 (441)
T PRK10365 296 QDL 298 (441)
T ss_pred HHH
Confidence 433
No 209
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=4.1e-06 Score=88.63 Aligned_cols=120 Identities=21% Similarity=0.306 Sum_probs=70.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCC------------------------EEEeccccccccccccchhhhHHHHHhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~------------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~ 386 (575)
+.+||.||.|+||+++|+++|+.+.+. +..+...+ ...++. ..++++.+.
T Consensus 25 HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~---~~~I~i---d~iR~l~~~ 98 (325)
T PRK06871 25 HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID---NKDIGV---DQVREINEK 98 (325)
T ss_pred eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc---CCCCCH---HHHHHHHHH
Confidence 567799999999999999999877321 11111100 011222 233433322
Q ss_pred chhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEec
Q 008176 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (575)
Q Consensus 387 a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~t 466 (575)
...........|++||++|+|... .+|+||+.||+ ...+++||.+
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~~~--------------AaNaLLKtLEE---------------------Pp~~~~fiL~ 143 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLTEA--------------AANALLKTLEE---------------------PRPNTYFLLQ 143 (325)
T ss_pred HhhccccCCceEEEEechhhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEE
Confidence 211112245579999999999987 89999999995 1233455544
Q ss_pred C-CCcChHHHHHhhhcccCCCCCCchhh
Q 008176 467 G-AFVDIEKTISERRQDSSIGFGAPVRA 493 (575)
Q Consensus 467 g-n~~dL~~~i~~rr~~~~IgF~~p~~e 493 (575)
+ +...+-..++.|.. .+.|..+..+
T Consensus 144 t~~~~~llpTI~SRC~--~~~~~~~~~~ 169 (325)
T PRK06871 144 ADLSAALLPTIYSRCQ--TWLIHPPEEQ 169 (325)
T ss_pred ECChHhCchHHHhhce--EEeCCCCCHH
Confidence 4 44446556655533 4445555433
No 210
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.42 E-value=5e-06 Score=83.96 Aligned_cols=172 Identities=22% Similarity=0.324 Sum_probs=106.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
+++|-+.+++.|.+-...... + .+..||||+|.-|||||+|+||+-..+
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~----G------------------------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~ 112 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAE----G------------------------LPANNVLLWGARGTGKSSLVKALLNEYADE 112 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHc----C------------------------CcccceEEecCCCCChHHHHHHHHHHHHhc
Confidence 479999999998876641111 1 123699999999999999999998776
Q ss_pred CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 355 ~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
+..+++|+..++.. -..+-+.+... ...=|||+|+.- -+ .++..-.+|-.+||
T Consensus 113 glrLVEV~k~dl~~--------Lp~l~~~Lr~~------~~kFIlFcDDLS---Fe----------~gd~~yK~LKs~Le 165 (287)
T COG2607 113 GLRLVEVDKEDLAT--------LPDLVELLRAR------PEKFILFCDDLS---FE----------EGDDAYKALKSALE 165 (287)
T ss_pred CCeEEEEcHHHHhh--------HHHHHHHHhcC------CceEEEEecCCC---CC----------CCchHHHHHHHHhc
Confidence 56688888777653 11122222222 245599999731 11 11225778888999
Q ss_pred CCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhh
Q 008176 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (575)
Q Consensus 435 g~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l 513 (575)
|... -...|++|-+|+|... |.+.+.++ .++. ++ ... .+.+.+.
T Consensus 166 G~ve-----------------~rP~NVl~YATSNRRHLl~e~~~dn-----~~~~----~e----ih~----~eaveEK- 210 (287)
T COG2607 166 GGVE-----------------GRPANVLFYATSNRRHLLPEDMKDN-----EGST----GE----IHP----SEAVEEK- 210 (287)
T ss_pred CCcc-----------------cCCCeEEEEEecCCcccccHhhhhC-----CCcc----cc----cCh----hHHHHHh-
Confidence 7432 2467899999999765 22222221 1111 00 000 1111111
Q ss_pred cchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHh
Q 008176 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLT 550 (575)
Q Consensus 514 ~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~ 550 (575)
-.+-+||...+.|.+.+.++..+|+.
T Consensus 211 -----------lSlSDRFGLwL~F~~~~Q~~YL~~V~ 236 (287)
T COG2607 211 -----------LSLSDRFGLWLSFYPCDQDEYLKIVD 236 (287)
T ss_pred -----------hchhhhcceeecccCCCHHHHHHHHH
Confidence 24557999999999999999998875
No 211
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.41 E-value=1e-06 Score=98.23 Aligned_cols=141 Identities=19% Similarity=0.292 Sum_probs=84.8
Q ss_pred HHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHH
Q 008176 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (575)
Q Consensus 271 l~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraL 350 (575)
+...|-.-|.|.+.+|.-|.-.+. .+.+.. .-.++++.- .-||+++|.||+||+-+.++.
T Consensus 339 lv~Sl~PsIyGhe~VK~GilL~Lf-------GGv~K~------------a~eg~~lRG-Dinv~iVGDPgt~KSQfLk~v 398 (764)
T KOG0480|consen 339 LVNSLFPSIYGHELVKAGILLSLF-------GGVHKS------------AGEGTSLRG-DINVCIVGDPGTGKSQFLKAV 398 (764)
T ss_pred HHHhhCccccchHHHHhhHHHHHh-------CCcccc------------CCCCccccC-CceEEEeCCCCccHHHHHHHH
Confidence 445555678999999998876663 111100 001222221 259999999999999999999
Q ss_pred HHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHH
Q 008176 351 ARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (575)
Q Consensus 351 A~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL 430 (575)
+..+-..++ +.+..-..+|+...-+.......|.-....+-.+++||-.|||+|+|..+ -|.+|+
T Consensus 399 ~~fsPR~vY-tsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~--------------dqvAih 463 (764)
T KOG0480|consen 399 CAFSPRSVY-TSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK--------------DQVAIH 463 (764)
T ss_pred hccCCcceE-ecCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChH--------------hHHHHH
Confidence 998855544 33332221221110000000011111111233468999999999999865 489999
Q ss_pred HHhhCCeecccCCCcc
Q 008176 431 KMLEGTVVNVPEKGAR 446 (575)
Q Consensus 431 ~~LEg~~v~vpe~g~~ 446 (575)
++||..+++|...|..
T Consensus 464 EAMEQQtISIaKAGv~ 479 (764)
T KOG0480|consen 464 EAMEQQTISIAKAGVV 479 (764)
T ss_pred HHHHhheehheecceE
Confidence 9999888888555533
No 212
>PRK04132 replication factor C small subunit; Provisional
Probab=98.40 E-value=1e-06 Score=103.10 Aligned_cols=122 Identities=22% Similarity=0.265 Sum_probs=78.2
Q ss_pred ccccCccEEEEc--CCCCChHHHHHHHHHHh-----CCCEEEeccccccccccccchhhhHHHHHhhhch-h-hHHhhcc
Q 008176 326 VELEKSNILLMG--PTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSD-Y-NVAAAQQ 396 (575)
Q Consensus 326 v~i~~~~VLL~G--PpGTGKTtLAraLA~~l-----~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~-~-~l~~~~~ 396 (575)
+.++.-+-+..| |.+.||||+|+++|+.+ +.+++++++++... . ..+++...... . .+.....
T Consensus 560 ~~~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg-----i---d~IR~iIk~~a~~~~~~~~~~ 631 (846)
T PRK04132 560 LHVPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG-----I---NVIREKVKEFARTKPIGGASF 631 (846)
T ss_pred eccCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc-----H---HHHHHHHHHHHhcCCcCCCCC
Confidence 445555667789 99999999999999987 45789999987432 1 12333322211 0 0001123
Q ss_pred CeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHH
Q 008176 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKT 475 (575)
Q Consensus 397 ~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~ 475 (575)
.|++|||+|.+... .|++|++.||. ...++.||+++|... +.++
T Consensus 632 KVvIIDEaD~Lt~~--------------AQnALLk~lEe---------------------p~~~~~FILi~N~~~kIi~t 676 (846)
T PRK04132 632 KIIFLDEADALTQD--------------AQQALRRTMEM---------------------FSSNVRFILSCNYSSKIIEP 676 (846)
T ss_pred EEEEEECcccCCHH--------------HHHHHHHHhhC---------------------CCCCeEEEEEeCChhhCchH
Confidence 69999999999876 89999999993 123456666665443 4455
Q ss_pred HHhhhcccCCCCCCchh
Q 008176 476 ISERRQDSSIGFGAPVR 492 (575)
Q Consensus 476 i~~rr~~~~IgF~~p~~ 492 (575)
++.| +..+.|..+..
T Consensus 677 IrSR--C~~i~F~~ls~ 691 (846)
T PRK04132 677 IQSR--CAIFRFRPLRD 691 (846)
T ss_pred Hhhh--ceEEeCCCCCH
Confidence 5544 34555555543
No 213
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=9.8e-07 Score=100.21 Aligned_cols=135 Identities=14% Similarity=0.282 Sum_probs=91.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~ 410 (575)
..+||+|+||||||++++++|.+++.+++.++|.++... -.+.. +..+...|.+++. ..++|||+-.+|.+.-+
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~-s~~~~-etkl~~~f~~a~~----~~pavifl~~~dvl~id 505 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAE-SASHT-ETKLQAIFSRARR----CSPAVLFLRNLDVLGID 505 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhc-ccchh-HHHHHHHHHHHhh----cCceEEEEeccceeeec
Confidence 468899999999999999999999999999999997742 22232 5566677776653 58999999999998854
Q ss_pred hhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHhhhcccCCCCCC
Q 008176 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGA 489 (575)
Q Consensus 411 r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~rr~~~~IgF~~ 489 (575)
++. + ...++++.+...|.-.. .......+++|++++..+ +...+ ++.+...|.++.
T Consensus 506 ~dg---g---ed~rl~~~i~~~ls~e~----------------~~~~~~~~ivv~t~~s~~~lp~~i-~~~f~~ei~~~~ 562 (953)
T KOG0736|consen 506 QDG---G---EDARLLKVIRHLLSNED----------------FKFSCPPVIVVATTSSIEDLPADI-QSLFLHEIEVPA 562 (953)
T ss_pred CCC---c---hhHHHHHHHHHHHhccc----------------ccCCCCceEEEEeccccccCCHHH-HHhhhhhccCCC
Confidence 321 1 11235555555554100 012344577777766554 44444 356667777777
Q ss_pred chhhh
Q 008176 490 PVRAN 494 (575)
Q Consensus 490 p~~e~ 494 (575)
+++++
T Consensus 563 lse~q 567 (953)
T KOG0736|consen 563 LSEEQ 567 (953)
T ss_pred CCHHH
Confidence 77665
No 214
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.40 E-value=1e-06 Score=96.96 Aligned_cols=85 Identities=18% Similarity=0.312 Sum_probs=51.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l 407 (575)
.+++|+||+|+|||+|++++++.+ +..++.+++.++.. .++..--.... ..|.. ......+|+|||++.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~-~~~~~l~~~~~-~~f~~-----~~~~~dvLiIDDiq~l 214 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE-HLVSAIRSGEM-QRFRQ-----FYRNVDALFIEDIEVF 214 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH-HHHHHHhcchH-HHHHH-----HcccCCEEEEcchhhh
Confidence 468899999999999999999876 56677777655431 11100000000 01111 0124569999999998
Q ss_pred hHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
..+. ..|..|+..++
T Consensus 215 ~~k~------------~~qeelf~l~N 229 (445)
T PRK12422 215 SGKG------------ATQEEFFHTFN 229 (445)
T ss_pred cCCh------------hhHHHHHHHHH
Confidence 6531 14666666655
No 215
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.39 E-value=6e-06 Score=85.37 Aligned_cols=61 Identities=30% Similarity=0.446 Sum_probs=41.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC--
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~-- 355 (575)
.++||..|.+..-..+..-. ..+ ...+.+||.||||||||.||-++++++|
T Consensus 39 g~vGQ~~AReAagiivdlik-----~Kk----------------------maGravLlaGppgtGKTAlAlaisqELG~k 91 (456)
T KOG1942|consen 39 GFVGQENAREAAGIIVDLIK-----SKK----------------------MAGRAVLLAGPPGTGKTALALAISQELGPK 91 (456)
T ss_pred ccccchhhhhhhhHHHHHHH-----hhh----------------------ccCcEEEEecCCCCchhHHHHHHHHHhCCC
Confidence 47999999887655443111 111 1236899999999999999999998884
Q ss_pred CCEEEecccc
Q 008176 356 VPFVIADATT 365 (575)
Q Consensus 356 ~~fv~v~~s~ 365 (575)
.||.-+.+++
T Consensus 92 vPFcpmvgSE 101 (456)
T KOG1942|consen 92 VPFCPMVGSE 101 (456)
T ss_pred CCcccccchh
Confidence 4554444443
No 216
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=4.1e-06 Score=88.44 Aligned_cols=122 Identities=23% Similarity=0.287 Sum_probs=70.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCC---------------------EEEeccccccccccccch-----hhhHHHHHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVP---------------------FVIADATTLTQAGYVGED-----VESILYKLL 384 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~---------------------fv~v~~s~l~~sg~vGe~-----~~~~l~~lf 384 (575)
+.+||+||+|+||+++|.++|+.+.+. +..+.. . ....|.. ....++++.
T Consensus 27 HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~---~-p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 27 HGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSF---I-PNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEec---C-CCcccccccccccHHHHHHHH
Confidence 468899999999999999999876321 111100 0 0000100 022334333
Q ss_pred hhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEE
Q 008176 385 TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFI 464 (575)
Q Consensus 385 ~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I 464 (575)
+............|++|||+|+|... .+|+||+.||+ ...+++||
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE---------------------Pp~~~~fi 147 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAINRA--------------ACNALLKTLEE---------------------PSPGRYLW 147 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhCHH--------------HHHHHHHHhhC---------------------CCCCCeEE
Confidence 32211111234569999999999887 89999999995 12234444
Q ss_pred e-cCCCcChHHHHHhhhcccCCCCCCchhh
Q 008176 465 C-GGAFVDIEKTISERRQDSSIGFGAPVRA 493 (575)
Q Consensus 465 ~-tgn~~dL~~~i~~rr~~~~IgF~~p~~e 493 (575)
. +.+...+-..++.|.. .+.|+.|..+
T Consensus 148 L~~~~~~~lLpTIrSRCq--~i~~~~~~~~ 175 (319)
T PRK08769 148 LISAQPARLPATIRSRCQ--RLEFKLPPAH 175 (319)
T ss_pred EEECChhhCchHHHhhhe--EeeCCCcCHH
Confidence 4 4444446667766643 4556655443
No 217
>PRK06620 hypothetical protein; Validated
Probab=98.36 E-value=3.5e-06 Score=83.95 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=23.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCC
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~ 356 (575)
..++|+||||||||+|++++++..+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~ 70 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA 70 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC
Confidence 46889999999999999999987764
No 218
>PRK12377 putative replication protein; Provisional
Probab=98.36 E-value=1.1e-06 Score=89.61 Aligned_cols=83 Identities=14% Similarity=0.294 Sum_probs=52.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccccccchhhhHHHHHhhhc----hhhHHhhccCeEeehh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVS----DYNVAAAQQGIVYIDE 403 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a----~~~l~~~~~~ILfIDE 403 (575)
.+++|+||||||||+||.++|+.+ +..++.+...++... +...+... ...-......+|+|||
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~----------l~~~~~~~~~~~~~l~~l~~~dLLiIDD 171 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR----------LHESYDNGQSGEKFLQELCKVDLLVLDE 171 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH----------HHHHHhccchHHHHHHHhcCCCEEEEcC
Confidence 578999999999999999999887 556666666554320 11111000 0000113556999999
Q ss_pred HhhhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 404 ID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
+...... +..+..|..+++.
T Consensus 172 lg~~~~s------------~~~~~~l~~ii~~ 191 (248)
T PRK12377 172 IGIQRET------------KNEQVVLNQIIDR 191 (248)
T ss_pred CCCCCCC------------HHHHHHHHHHHHH
Confidence 9664322 1257889999984
No 219
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.34 E-value=2.9e-06 Score=93.44 Aligned_cols=87 Identities=17% Similarity=0.321 Sum_probs=51.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh-----CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l-----~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID 405 (575)
.+++|+|++|+|||+|++++++.+ +..++.+++.++.. .+... .... .+.+.... -......+|+|||++
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~-~~~~~-l~~~-~~~~~~~~--~~~~~~dvLiIDDiq 216 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR-KAVDI-LQKT-HKEIEQFK--NEICQNDVLIIDDVQ 216 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHH-HHHh-hhHHHHHH--HHhccCCEEEEeccc
Confidence 468899999999999999999865 35566677665442 11111 0000 00111100 001245699999999
Q ss_pred hhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 406 ~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
.+..+. ..+..|..+++
T Consensus 217 ~l~~k~------------~~~e~lf~l~N 233 (450)
T PRK14087 217 FLSYKE------------KTNEIFFTIFN 233 (450)
T ss_pred cccCCH------------HHHHHHHHHHH
Confidence 886431 15666666665
No 220
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.33 E-value=1.1e-06 Score=90.88 Aligned_cols=127 Identities=26% Similarity=0.410 Sum_probs=80.7
Q ss_pred ccEEEEcCCCCChHHHHHHHH------HHhCCCEEEeccccccccccccchhhhHHHHHhhhch----hhHHhhccCeEe
Q 008176 331 SNILLMGPTGSGKTLLAKTLA------RYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSD----YNVAAAQQGIVY 400 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA------~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~----~~l~~~~~~ILf 400 (575)
.++||.||+|.||+.||+.|- +.+..+|++++|..+...+-+.. ....+...|..+. ..+.++.++++|
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsa-lfghvkgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSA-LFGHVKGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHH-HHhhhccccccchhhhhhhhccCCCceEe
Confidence 579999999999999999885 33478999999988764221111 0112233333322 234567899999
Q ss_pred ehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhh
Q 008176 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (575)
Q Consensus 401 IDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr 480 (575)
+|||..+..+ -|..||+.+|+..+. +-+....+ .++.-+|+++ ..|+...+.+++
T Consensus 288 ldeigelgad--------------eqamllkaieekrf~---------pfgsdr~v-~sdfqliagt-vrdlrq~vaeg~ 342 (531)
T COG4650 288 LDEIGELGAD--------------EQAMLLKAIEEKRFY---------PFGSDRQV-SSDFQLIAGT-VRDLRQLVAEGK 342 (531)
T ss_pred hHhhhhcCcc--------------HHHHHHHHHHhhccC---------CCCCcccc-ccchHHhhhh-HHHHHHHHhccc
Confidence 9999998776 688999999964432 11111111 2234444443 357777777766
Q ss_pred ccc
Q 008176 481 QDS 483 (575)
Q Consensus 481 ~~~ 483 (575)
|+.
T Consensus 343 fre 345 (531)
T COG4650 343 FRE 345 (531)
T ss_pred hHH
Confidence 654
No 221
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=3.4e-06 Score=89.83 Aligned_cols=64 Identities=19% Similarity=0.225 Sum_probs=43.2
Q ss_pred hccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecC-CCcCh
Q 008176 394 AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGG-AFVDI 472 (575)
Q Consensus 394 ~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tg-n~~dL 472 (575)
....|++||++|+|... ..|+||+.||+ ...+++||..+ +...+
T Consensus 131 ~~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE---------------------Pp~~t~fiL~t~~~~~L 175 (342)
T PRK06964 131 GGARVVVLYPAEALNVA--------------AANALLKTLEE---------------------PPPGTVFLLVSARIDRL 175 (342)
T ss_pred CCceEEEEechhhcCHH--------------HHHHHHHHhcC---------------------CCcCcEEEEEECChhhC
Confidence 34569999999999887 89999999995 12334455444 44446
Q ss_pred HHHHHhhhcccCCCCCCchhhh
Q 008176 473 EKTISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 473 ~~~i~~rr~~~~IgF~~p~~e~ 494 (575)
...++.|. ..+.|+.|..+.
T Consensus 176 LpTI~SRc--q~i~~~~~~~~~ 195 (342)
T PRK06964 176 LPTILSRC--RQFPMTVPAPEA 195 (342)
T ss_pred cHHHHhcC--EEEEecCCCHHH
Confidence 66776654 355666665443
No 222
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.27 E-value=2.4e-06 Score=89.18 Aligned_cols=86 Identities=28% Similarity=0.385 Sum_probs=57.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCC------EEEeccccccccccccchhhhHHHHHhhhchh-hHHh--hccCeEee
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVP------FVIADATTLTQAGYVGEDVESILYKLLTVSDY-NVAA--AQQGIVYI 401 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~-~l~~--~~~~ILfI 401 (575)
.|.|++||||+|||+...+.|+.+..+ +..++.+ +-.|-++.+.-...|..... ...+ .....+++
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS-----d~rgid~vr~qi~~fast~~~~~fst~~~fKlvIL 137 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS-----DDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVIL 137 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc-----CccCCcchHHHHHHHHhhccceeccccCceeEEEe
Confidence 489999999999999999999988553 1222332 23333333333333333321 1111 25678999
Q ss_pred hhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 402 DEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 402 DEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
||+|.+..+ +|++|.+.++.
T Consensus 138 DEADaMT~~--------------AQnALRRviek 157 (360)
T KOG0990|consen 138 DEADAMTRD--------------AQNALRRVIEK 157 (360)
T ss_pred cchhHhhHH--------------HHHHHHHHHHH
Confidence 999999987 99999998884
No 223
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.26 E-value=1.4e-06 Score=104.16 Aligned_cols=123 Identities=24% Similarity=0.244 Sum_probs=87.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccc-cccccchhhhH-HHHHhhhchhhHH-hhccCeEeehhHhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGEDVESI-LYKLLTVSDYNVA-AAQQGIVYIDEVDKI 407 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~-sg~vGe~~~~~-l~~lf~~a~~~l~-~~~~~ILfIDEID~l 407 (575)
-++|+-||+-+|||++.+.+|+..|..|++++-.+-+. ..|+|.=+..- -.-.|... ..+. ..++-.|++||.+.+
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEG-vLVeAlR~GyWIVLDELNLA 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEG-VLVEALRRGYWIVLDELNLA 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehh-HHHHHHhcCcEEEeeccccC
Confidence 47999999999999999999999999999999877443 22444311000 00001110 1122 234558899999998
Q ss_pred hHhhhhcccCCCcchHHHHHHHHHHhh-CCeecccCCCcccCCCCCcceecCCCEEEEecCC
Q 008176 408 TKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGA 468 (575)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~aLL~~LE-g~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn 468 (575)
+.+ |..+|.+++| .+.+.|||+....++|.++...+|+|...+.+|.
T Consensus 968 pTD--------------VLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGR 1015 (4600)
T COG5271 968 PTD--------------VLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGR 1015 (4600)
T ss_pred cHH--------------HHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccch
Confidence 877 9999999998 7889999999888888877777777765555553
No 224
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=1.8e-05 Score=83.67 Aligned_cols=122 Identities=18% Similarity=0.190 Sum_probs=72.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCC-----------------------CEEEeccccccccccccchhhhHHHHHhhhc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNV-----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVS 387 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~-----------------------~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a 387 (575)
+.+||.||.|+||+++|+++|+.+.. ++..+....- ...++ ...++++....
T Consensus 26 hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~--~~~I~---vdqiR~l~~~~ 100 (319)
T PRK06090 26 GALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE--GKSIT---VEQIRQCNRLA 100 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC--CCcCC---HHHHHHHHHHH
Confidence 57889999999999999999987632 1222211100 00111 12233332221
Q ss_pred hhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEec-
Q 008176 388 DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG- 466 (575)
Q Consensus 388 ~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~t- 466 (575)
..........|++||++|+|... .+|+||+.||+ ...+++||..
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE---------------------Pp~~t~fiL~t 145 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMNES--------------ASNALLKTLEE---------------------PAPNCLFLLVT 145 (319)
T ss_pred hhCcccCCceEEEecchhhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEEE
Confidence 11111234569999999999887 89999999995 1233455544
Q ss_pred CCCcChHHHHHhhhcccCCCCCCchhhh
Q 008176 467 GAFVDIEKTISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 467 gn~~dL~~~i~~rr~~~~IgF~~p~~e~ 494 (575)
.+...+-..++.|.. .+.|+.|..+.
T Consensus 146 ~~~~~lLpTI~SRCq--~~~~~~~~~~~ 171 (319)
T PRK06090 146 HNQKRLLPTIVSRCQ--QWVVTPPSTAQ 171 (319)
T ss_pred CChhhChHHHHhcce--eEeCCCCCHHH
Confidence 444456667766644 55666665443
No 225
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.24 E-value=4.3e-06 Score=95.43 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=40.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCcc-EEEEcCCCCChHHHHHHHHHHhCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLARYVNV 356 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~-VLL~GPpGTGKTtLAraLA~~l~~ 356 (575)
+|+|+++.++.|..++.... +...++. ++|+||||||||++++++|+.++.
T Consensus 85 el~~~~~ki~~l~~~l~~~~----------------------------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~ 136 (637)
T TIGR00602 85 ELAVHKKKIEEVETWLKAQV----------------------------LENAPKRILLITGPSGCGKSTTIKILSKELGI 136 (637)
T ss_pred HhcCcHHHHHHHHHHHHhcc----------------------------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 38999999999888875111 1111233 679999999999999999998876
Q ss_pred CEE
Q 008176 357 PFV 359 (575)
Q Consensus 357 ~fv 359 (575)
.+.
T Consensus 137 ~~~ 139 (637)
T TIGR00602 137 QVQ 139 (637)
T ss_pred HHH
Confidence 543
No 226
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=1e-05 Score=85.93 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=73.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCC------------------------EEEeccccccccccccchhhhHHHHHhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~------------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~ 386 (575)
+.+||+||+|+||+++|+++|+.+-+. +..+....- ...++. ..++++.+.
T Consensus 25 HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~--~~~I~i---dqiR~l~~~ 99 (334)
T PRK07993 25 HALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG--KSSLGV---DAVREVTEK 99 (334)
T ss_pred eEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc--cccCCH---HHHHHHHHH
Confidence 577899999999999999999887321 111111000 001121 223333322
Q ss_pred chhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEec
Q 008176 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (575)
Q Consensus 387 a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~t 466 (575)
...........|++||++|+|... ..|+||+.||+ ...+++||..
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE---------------------Pp~~t~fiL~ 144 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLTDA--------------AANALLKTLEE---------------------PPENTWFFLA 144 (334)
T ss_pred HhhccccCCceEEEEcchHhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEE
Confidence 211112245679999999999987 89999999995 1223444444
Q ss_pred -CCCcChHHHHHhhhcccCCCCCCchhhh
Q 008176 467 -GAFVDIEKTISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 467 -gn~~dL~~~i~~rr~~~~IgF~~p~~e~ 494 (575)
.+...+-..++.|.+ .+.|+.|..+.
T Consensus 145 t~~~~~lLpTIrSRCq--~~~~~~~~~~~ 171 (334)
T PRK07993 145 CREPARLLATLRSRCR--LHYLAPPPEQY 171 (334)
T ss_pred ECChhhChHHHHhccc--cccCCCCCHHH
Confidence 444447777776654 46777765554
No 227
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.24 E-value=2.3e-05 Score=79.15 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=22.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
+.++|+||+|+||||+++.+++.+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 4578999999999999999998875
No 228
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=7.9e-06 Score=89.90 Aligned_cols=92 Identities=29% Similarity=0.432 Sum_probs=66.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccccccccchh---hhHHHHHhhhchhhHHhhccCeEeehhHhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDV---ESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~---~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l 407 (575)
..+||.||||+|||+||-.+|...+.||+.+-..+ +++|-+. -..+.+.|+.|- +..-+||++|+|+++
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe----~miG~sEsaKc~~i~k~F~DAY----kS~lsiivvDdiErL 610 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPE----DMIGLSESAKCAHIKKIFEDAY----KSPLSIIVVDDIERL 610 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChH----HccCccHHHHHHHHHHHHHHhh----cCcceEEEEcchhhh
Confidence 47899999999999999999999999998765433 2333331 234455665542 345679999999998
Q ss_pred hHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
..- ...+..++.- +.++|+-++.
T Consensus 611 iD~---vpIGPRfSN~-vlQaL~VllK 633 (744)
T KOG0741|consen 611 LDY---VPIGPRFSNL-VLQALLVLLK 633 (744)
T ss_pred hcc---cccCchhhHH-HHHHHHHHhc
Confidence 653 4455655544 8888888887
No 229
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=3.2e-06 Score=95.96 Aligned_cols=139 Identities=19% Similarity=0.337 Sum_probs=88.4
Q ss_pred CCCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhCCC--EEEeccccccc---------cccccchh--------
Q 008176 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATTLTQ---------AGYVGEDV-------- 376 (575)
Q Consensus 317 ~~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~~--fv~v~~s~l~~---------sg~vGe~~-------- 376 (575)
+-.++++++++++++.+. |+||+|+||||+|..|-+..+-. -+.+|+.++.+ .++||+++
T Consensus 480 ~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~ 559 (716)
T KOG0058|consen 480 DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIR 559 (716)
T ss_pred CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHH
Confidence 344999999999999888 99999999999999999887322 23455554432 33444432
Q ss_pred -----------hhHHHHHhhhchh----------------------------hH-----HhhccCeEeehhHhhhhHhhh
Q 008176 377 -----------ESILYKLLTVSDY----------------------------NV-----AAAQQGIVYIDEVDKITKKAE 412 (575)
Q Consensus 377 -----------~~~l~~lf~~a~~----------------------------~l-----~~~~~~ILfIDEID~l~~~r~ 412 (575)
...+...-+++.. .+ --.+|.||+|||+..+.....
T Consensus 560 eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeS 639 (716)
T KOG0058|consen 560 ENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAES 639 (716)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhh
Confidence 0001111111000 00 124799999999988766522
Q ss_pred hcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC
Q 008176 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (575)
Q Consensus 413 ~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d 471 (575)
..-||.+|-+.|++++|.+ ..|+...+-.+..|++|-.|...+
T Consensus 640 ---------E~lVq~aL~~~~~~rTVlv-------IAHRLSTV~~Ad~Ivvi~~G~V~E 682 (716)
T KOG0058|consen 640 ---------EYLVQEALDRLMQGRTVLV-------IAHRLSTVRHADQIVVIDKGRVVE 682 (716)
T ss_pred ---------HHHHHHHHHHhhcCCeEEE-------EehhhhHhhhccEEEEEcCCeEEe
Confidence 2238999999999887765 455555555566677766665444
No 230
>PRK08116 hypothetical protein; Validated
Probab=98.21 E-value=3.2e-06 Score=87.10 Aligned_cols=86 Identities=19% Similarity=0.374 Sum_probs=52.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEecccccccc---ccccchhhhHHHHHhhhchhhHHhhccCeEeehhH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~s---g~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEI 404 (575)
.+++|+|++|||||+||.++++.+ +.+++.++..++... .|-... .....+.+.. .....+|+|||+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~-~~~~~~~~~~------l~~~dlLviDDl 187 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSG-KEDENEIIRS------LVNADLLILDDL 187 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccc-cccHHHHHHH------hcCCCEEEEecc
Confidence 368999999999999999999876 667777776664320 010000 0000011110 123469999998
Q ss_pred hhhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 405 DKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 405 D~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
..-... +..+..|..+++.
T Consensus 188 g~e~~t------------~~~~~~l~~iin~ 206 (268)
T PRK08116 188 GAERDT------------EWAREKVYNIIDS 206 (268)
T ss_pred cCCCCC------------HHHHHHHHHHHHH
Confidence 542111 2267888898883
No 231
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=1.4e-05 Score=84.67 Aligned_cols=125 Identities=18% Similarity=0.244 Sum_probs=73.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCC-------------------------CEEEeccccc-cccc----cccchhhhHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNV-------------------------PFVIADATTL-TQAG----YVGEDVESIL 380 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~-------------------------~fv~v~~s~l-~~sg----~vGe~~~~~l 380 (575)
+.+||+||+|+|||++|+.+|+.+.+ +++.+....- .+.+ -++ ...+
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~---id~i 98 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIK---IDAV 98 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcC---HHHH
Confidence 56889999999999999999988632 1333322110 0000 011 2234
Q ss_pred HHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCC
Q 008176 381 YKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKD 460 (575)
Q Consensus 381 ~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsn 460 (575)
+++.+............|++||+++.+... .+++|++.||+. ....
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~--------------a~naLLk~LEep--------------------~~~~ 144 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQ--------------AANSLLKVLEEP--------------------PPQV 144 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHH--------------HHHHHHHHHHhC--------------------cCCC
Confidence 444433322222245679999999999887 899999999941 0111
Q ss_pred EEEEecCCCcChHHHHHhhhcccCCCCCCchhhh
Q 008176 461 ILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 461 il~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~ 494 (575)
++++.|.+...+...++.|. ..+.|..|..+.
T Consensus 145 ~~Ilvth~~~~ll~ti~SRc--~~~~~~~~~~~~ 176 (325)
T PRK08699 145 VFLLVSHAADKVLPTIKSRC--RKMVLPAPSHEE 176 (325)
T ss_pred EEEEEeCChHhChHHHHHHh--hhhcCCCCCHHH
Confidence 33444444444666666554 355566665554
No 232
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.16 E-value=3e-06 Score=75.98 Aligned_cols=37 Identities=32% Similarity=0.521 Sum_probs=28.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh--------CCCEEEecccccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV--------NVPFVIADATTLT 367 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l--------~~~fv~v~~s~l~ 367 (575)
+.++++||+|+|||++++.+++.+ ..+++.+++....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 578899999999999999999876 5667777766533
No 233
>PRK06526 transposase; Provisional
Probab=98.12 E-value=1.9e-06 Score=88.20 Aligned_cols=89 Identities=21% Similarity=0.296 Sum_probs=52.2
Q ss_pred cccCccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehh
Q 008176 327 ELEKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (575)
Q Consensus 327 ~i~~~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDE 403 (575)
.-...+++|+||||||||+||.+|+..+ |..+..+.+.++... +........+...+. ......+|+|||
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~-l~~~~~~~~~~~~l~------~l~~~dlLIIDD 167 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR-LAAAHHAGRLQAELV------KLGRYPLLIVDE 167 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH-HHHHHhcCcHHHHHH------HhccCCEEEEcc
Confidence 3345689999999999999999998765 455544444443210 000000001111111 113456999999
Q ss_pred HhhhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 404 VDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 404 ID~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
++...... ..++.|.++++
T Consensus 168 ~g~~~~~~------------~~~~~L~~li~ 186 (254)
T PRK06526 168 VGYIPFEP------------EAANLFFQLVS 186 (254)
T ss_pred cccCCCCH------------HHHHHHHHHHH
Confidence 99875431 15677888887
No 234
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.11 E-value=4e-06 Score=93.42 Aligned_cols=155 Identities=17% Similarity=0.261 Sum_probs=86.1
Q ss_pred HHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHH
Q 008176 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (575)
Q Consensus 271 l~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraL 350 (575)
+...+...|.|...+|+.+..++.---. +-+++... + ....||||.|.|||||+-..|.+
T Consensus 443 IiaSiaPsIyGh~~VK~AvAlaLfGGv~--------kn~~~khk------v------RGDinvLL~GDPGTaKSQFLKY~ 502 (854)
T KOG0477|consen 443 IIASIAPSIYGHEDVKRAVALALFGGVP--------KNPGGKHK------V------RGDINVLLLGDPGTAKSQFLKYA 502 (854)
T ss_pred HHHhhCchhhchHHHHHHHHHHHhcCCc--------cCCCCCce------e------ccceeEEEecCCCccHHHHHHHH
Confidence 4455556789999999999888841111 10111000 0 12259999999999999999999
Q ss_pred HHHhCCCEEEeccccccccccccchhhhH-HHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHH
Q 008176 351 ARYVNVPFVIADATTLTQAGYVGEDVESI-LYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (575)
Q Consensus 351 A~~l~~~fv~v~~s~l~~sg~vGe~~~~~-l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aL 429 (575)
++.....++..--.. ...|+........ .+++.-++ ..+..+.+||.+|||+|+|... =...+
T Consensus 503 eK~s~RAV~tTGqGA-SavGLTa~v~KdPvtrEWTLEa-GALVLADkGvClIDEFDKMndq--------------DRtSI 566 (854)
T KOG0477|consen 503 EKTSPRAVFTTGQGA-SAVGLTAYVRKDPVTREWTLEA-GALVLADKGVCLIDEFDKMNDQ--------------DRTSI 566 (854)
T ss_pred HhcCcceeEeccCCc-cccceeEEEeeCCccceeeecc-CeEEEccCceEEeehhhhhccc--------------ccchH
Confidence 988766554321111 0011111100000 11111111 1233468899999999999765 24457
Q ss_pred HHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCC
Q 008176 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (575)
Q Consensus 430 L~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~ 469 (575)
-++||...++|...|.....+ ....+|+++|.
T Consensus 567 HEAMEQQSISISKAGIVtsLq--------ArctvIAAanP 598 (854)
T KOG0477|consen 567 HEAMEQQSISISKAGIVTSLQ--------ARCTVIAAANP 598 (854)
T ss_pred HHHHHhcchhhhhhhHHHHHH--------hhhhhheecCC
Confidence 778886666664433332222 23455666664
No 235
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.11 E-value=6.6e-06 Score=75.74 Aligned_cols=63 Identities=25% Similarity=0.340 Sum_probs=50.3
Q ss_pred CChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEE-EEcCCCCChH
Q 008176 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNIL-LMGPTGSGKT 344 (575)
Q Consensus 266 ~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VL-L~GPpGTGKT 344 (575)
...+.++..|++.|.||+-|++.+..+|..++... . ..+.-|| |.|+||||||
T Consensus 14 ~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~----~----------------------p~KpLVlSfHG~tGtGKn 67 (127)
T PF06309_consen 14 YNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANP----N----------------------PRKPLVLSFHGWTGTGKN 67 (127)
T ss_pred CCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCC----C----------------------CCCCEEEEeecCCCCcHH
Confidence 35678999999999999999999999998665420 0 1122344 9999999999
Q ss_pred HHHHHHHHHh
Q 008176 345 LLAKTLARYV 354 (575)
Q Consensus 345 tLAraLA~~l 354 (575)
.+++.||+.+
T Consensus 68 ~v~~liA~~l 77 (127)
T PF06309_consen 68 FVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHH
Confidence 9999999886
No 236
>PF13173 AAA_14: AAA domain
Probab=98.10 E-value=1.1e-05 Score=73.33 Aligned_cols=70 Identities=24% Similarity=0.355 Sum_probs=45.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhC--CCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVN--VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~--~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~ 408 (575)
..++|+||.||||||+++.+++.+. ..++.+++.+....... . .. +.+.+... ......+||||||+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~--~-~~-~~~~~~~~----~~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA--D-PD-LLEYFLEL----IKPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh--h-hh-hHHHHHHh----hccCCcEEEEehhhhhc
Confidence 4678999999999999999998775 66777887764321100 0 00 11111111 01256799999999985
No 237
>PRK09087 hypothetical protein; Validated
Probab=98.10 E-value=1.1e-05 Score=81.22 Aligned_cols=28 Identities=36% Similarity=0.521 Sum_probs=23.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~f 358 (575)
..++|+||+|+|||+|++++++..+..+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~ 72 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALL 72 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEE
Confidence 3588999999999999999998765443
No 238
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.08 E-value=8.5e-06 Score=82.99 Aligned_cols=86 Identities=16% Similarity=0.272 Sum_probs=52.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccccccc--hhhhHHHHHhhhchhhHHhhccCeEeehhHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGE--DVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg~vGe--~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID 405 (575)
.+++|+|+||||||+||.++|..+ +..++.++..++.. .+... .......+.+.. .....+|+|||++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~-~l~~~~~~~~~~~~~~l~~------l~~~dlLvIDDig 172 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS-AMKDTFSNSETSEEQLLND------LSNVDLLVIDEIG 172 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH-HHHHHHhhccccHHHHHHH------hccCCEEEEeCCC
Confidence 478999999999999999999887 56677676655432 01100 000000011111 1245699999998
Q ss_pred hhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 406 KITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 406 ~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
..... +.....|.++++.
T Consensus 173 ~~~~s------------~~~~~~l~~Ii~~ 190 (244)
T PRK07952 173 VQTES------------RYEKVIINQIVDR 190 (244)
T ss_pred CCCCC------------HHHHHHHHHHHHH
Confidence 76422 1145677888883
No 239
>PRK08181 transposase; Validated
Probab=98.04 E-value=4.1e-06 Score=86.47 Aligned_cols=86 Identities=22% Similarity=0.356 Sum_probs=53.4
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhh
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~ 406 (575)
..+++|+||||||||.||.+++..+ +..++.++..++... +........+.+.+. ......+|+|||+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~-l~~a~~~~~~~~~l~------~l~~~dLLIIDDlg~ 178 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK-LQVARRELQLESAIA------KLDKFDLLILDDLAY 178 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH-HHHHHhCCcHHHHHH------HHhcCCEEEEecccc
Confidence 4579999999999999999999755 566666666554421 100000000111111 113456999999987
Q ss_pred hhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 407 ITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 407 l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
...+. ..++.|+++++
T Consensus 179 ~~~~~------------~~~~~Lf~lin 194 (269)
T PRK08181 179 VTKDQ------------AETSVLFELIS 194 (269)
T ss_pred ccCCH------------HHHHHHHHHHH
Confidence 65431 25678888887
No 240
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.03 E-value=5.5e-06 Score=90.62 Aligned_cols=140 Identities=21% Similarity=0.314 Sum_probs=84.9
Q ss_pred HHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHH
Q 008176 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAK 348 (575)
Q Consensus 269 ~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAr 348 (575)
+.+.+.+...|.|.+.+|+.|..++.- . .+...=++..+. ..-+|+|.|.||+.|+-|.+
T Consensus 334 ekLa~SiAPEIyGheDVKKaLLLlLVG--------g-----------vd~~~~dGMKIR-GdINicLmGDPGVAKSQLLk 393 (721)
T KOG0482|consen 334 EKLAASIAPEIYGHEDVKKALLLLLVG--------G-----------VDKSPGDGMKIR-GDINICLMGDPGVAKSQLLK 393 (721)
T ss_pred HHHHHhhchhhccchHHHHHHHHHhhC--------C-----------CCCCCCCCceee-cceeEEecCCCchhHHHHHH
Confidence 345666677899999999999887740 0 000001222222 12589999999999999999
Q ss_pred HHHHHhCCCEEEeccccccccccccchhhhHHHHHh----hhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHH
Q 008176 349 TLARYVNVPFVIADATTLTQAGYVGEDVESILYKLL----TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (575)
Q Consensus 349 aLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf----~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~ 424 (575)
.+.+..-...+..-.. +.=+|-+ ....++-. ......+-.+++||..|||+|++...
T Consensus 394 yi~rlapRgvYTTGrG----SSGVGLT-AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~-------------- 454 (721)
T KOG0482|consen 394 YISRLAPRGVYTTGRG----SSGVGLT-AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES-------------- 454 (721)
T ss_pred HHHhcCcccceecCCC----CCccccc-hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh--------------
Confidence 9998774443321111 1111211 11111111 11112233478999999999999876
Q ss_pred HHHHHHHHhhCCeecccCCCccc
Q 008176 425 VQQALLKMLEGTVVNVPEKGARK 447 (575)
Q Consensus 425 vq~aLL~~LEg~~v~vpe~g~~~ 447 (575)
=..++.++||..+++|...|...
T Consensus 455 DRtAIHEVMEQQTISIaKAGI~T 477 (721)
T KOG0482|consen 455 DRTAIHEVMEQQTISIAKAGINT 477 (721)
T ss_pred hhHHHHHHHHhhhhhhhhhcccc
Confidence 46689999998888876555433
No 241
>PRK09183 transposase/IS protein; Provisional
Probab=98.00 E-value=6e-06 Score=84.61 Aligned_cols=94 Identities=19% Similarity=0.249 Sum_probs=54.3
Q ss_pred CCcccccCccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeE
Q 008176 323 DDTVELEKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIV 399 (575)
Q Consensus 323 ~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~IL 399 (575)
+.++.....+++|+||||||||+||.+++... |..+..+++.++.. .+........+...+... .....++
T Consensus 95 ~~~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~-~l~~a~~~~~~~~~~~~~-----~~~~dlL 168 (259)
T PRK09183 95 SLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL-QLSTAQRQGRYKTTLQRG-----VMAPRLL 168 (259)
T ss_pred cCCchhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH-HHHHHHHCCcHHHHHHHH-----hcCCCEE
Confidence 34443344578899999999999999997654 55665566554431 111000000111111110 1345699
Q ss_pred eehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 400 fIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
+|||++.....+ ..++.|+++++
T Consensus 169 iiDdlg~~~~~~------------~~~~~lf~li~ 191 (259)
T PRK09183 169 IIDEIGYLPFSQ------------EEANLFFQVIA 191 (259)
T ss_pred EEcccccCCCCh------------HHHHHHHHHHH
Confidence 999998754432 14667888887
No 242
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.99 E-value=3.7e-05 Score=74.68 Aligned_cols=24 Identities=50% Similarity=0.732 Sum_probs=22.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
..++++||.|+|||+|++.+.+.+
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHh
Confidence 578899999999999999999887
No 243
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.95 E-value=7.9e-06 Score=89.47 Aligned_cols=141 Identities=21% Similarity=0.361 Sum_probs=81.4
Q ss_pred HHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHH
Q 008176 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (575)
Q Consensus 271 l~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraL 350 (575)
+...+..-|.|.+.+|+.+..++. .+.+...|.| +.+. ..-+|||.|.|||.|+-|.+-+
T Consensus 325 is~sIAPSIfG~~DiKkAiaClLF-------gGsrK~LpDg------------~~lR-GDINVLLLGDPgtAKSQlLKFv 384 (729)
T KOG0481|consen 325 ISKSIAPSIFGHEDIKKAIACLLF-------GGSRKRLPDG------------VTLR-GDINVLLLGDPGTAKSQLLKFV 384 (729)
T ss_pred HhhccCchhcCchhHHHHHHHHhh-------cCccccCCCc------------ceec-cceeEEEecCCchhHHHHHHHH
Confidence 455566679999999999998774 3333332222 1111 1258999999999999999888
Q ss_pred HHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHH
Q 008176 351 ARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (575)
Q Consensus 351 A~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL 430 (575)
-+..-..++ .++..-..+|+...-........|-........+++||+.|||+|+|..+ =.=++.
T Consensus 385 EkvsPIaVY-TSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~--------------DRVAIH 449 (729)
T KOG0481|consen 385 EKVSPIAVY-TSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRED--------------DRVAIH 449 (729)
T ss_pred HhcCceEEE-ecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCch--------------hhhHHH
Confidence 765532222 22211111111110000000111111112223468999999999999765 244788
Q ss_pred HHhhCCeecccCCCcc
Q 008176 431 KMLEGTVVNVPEKGAR 446 (575)
Q Consensus 431 ~~LEg~~v~vpe~g~~ 446 (575)
+.||..+++|...|.+
T Consensus 450 EAMEQQTISIAKAGIT 465 (729)
T KOG0481|consen 450 EAMEQQTISIAKAGIT 465 (729)
T ss_pred HHHHhhhHHHhhhcce
Confidence 8999877777555533
No 244
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.92 E-value=2.4e-05 Score=82.98 Aligned_cols=86 Identities=20% Similarity=0.316 Sum_probs=51.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccccccchh--hhHHHHHhhhchhhHHhhccCeEeehhHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDV--ESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg~vGe~~--~~~l~~lf~~a~~~l~~~~~~ILfIDEID 405 (575)
.+++|+||+|||||+||.++|+.+ +..++.++..++... +..... .......+. ....--+|+|||+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~-l~~~~~~~~~~~~~~~~------~l~~~DLLIIDDlG 256 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI-LREIRFNNDKELEEVYD------LLINCDLLIIDDLG 256 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH-HHHHHhccchhHHHHHH------HhccCCEEEEeccC
Confidence 579999999999999999999876 566666766654320 100000 000000000 01234599999987
Q ss_pred hhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 406 KITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 406 ~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
..... +..++.|..+++.
T Consensus 257 ~e~~t------------~~~~~~Lf~iin~ 274 (329)
T PRK06835 257 TEKIT------------EFSKSELFNLINK 274 (329)
T ss_pred CCCCC------------HHHHHHHHHHHHH
Confidence 65432 1257788888873
No 245
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.88 E-value=0.0001 Score=80.44 Aligned_cols=173 Identities=17% Similarity=0.238 Sum_probs=100.5
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh--
Q 008176 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (575)
Q Consensus 277 ~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l-- 354 (575)
..++|.+..+..+.+.+..|.-. -..+.+.+.|-||+|||.+..-+-..+
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~----------------------------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~ 201 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLEL----------------------------NTSGSLYVSGQPGTGKTALLSRVLDSLSK 201 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhc----------------------------ccCcceEeeCCCCcchHHHHHHHHHhhhh
Confidence 46899999999999988755431 013677799999999999887554332
Q ss_pred --CC-CEEEeccccccccccccc-------------hhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCC
Q 008176 355 --NV-PFVIADATTLTQAGYVGE-------------DVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (575)
Q Consensus 355 --~~-~fv~v~~s~l~~sg~vGe-------------~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~ 418 (575)
.. ..+.++|.++..+.-+.. ..+......|+..- ......-++++||+|.+...
T Consensus 202 ~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~--~q~k~~~llVlDEmD~L~tr-------- 271 (529)
T KOG2227|consen 202 SSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHT--KQSKFMLLLVLDEMDHLITR-------- 271 (529)
T ss_pred hcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH--hcccceEEEEechhhHHhhc--------
Confidence 12 347899988765321111 11111111111100 01123568899999999854
Q ss_pred CcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhhccC
Q 008176 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAG 498 (575)
Q Consensus 419 ~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~~~~ 498 (575)
-+..|+.+.+= | ...++.+++|.-+|..||-+....
T Consensus 272 ------~~~vLy~lFew-----p-------------~lp~sr~iLiGiANslDlTdR~Lp-------------------- 307 (529)
T KOG2227|consen 272 ------SQTVLYTLFEW-----P-------------KLPNSRIILIGIANSLDLTDRFLP-------------------- 307 (529)
T ss_pred ------ccceeeeehhc-----c-------------cCCcceeeeeeehhhhhHHHHHhh--------------------
Confidence 35556666650 0 123445666666665554332221
Q ss_pred CCChHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHH
Q 008176 499 GVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNA 555 (575)
Q Consensus 499 ~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~ 555 (575)
.+.. ...+. +..+.|.+|+.+++++|+.+.+..
T Consensus 308 -------------rL~~----~~~~~-------P~~l~F~PYTk~qI~~Il~~rl~~ 340 (529)
T KOG2227|consen 308 -------------RLNL----DLTIK-------PKLLVFPPYTKDQIVEILQQRLSE 340 (529)
T ss_pred -------------hhhh----ccCCC-------CceeeecCCCHHHHHHHHHHHHhc
Confidence 1111 01122 467889999999999999865543
No 246
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.86 E-value=4.1e-05 Score=77.82 Aligned_cols=37 Identities=27% Similarity=0.582 Sum_probs=34.5
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..+++++++.+.++.++ +.||+|||||||.+.+|...
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56899999999999999 99999999999999999766
No 247
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.81 E-value=2.1e-05 Score=76.23 Aligned_cols=82 Identities=22% Similarity=0.375 Sum_probs=49.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccc---cccccchhhhHHHHHhhhchhhHHhhccCeEeehhH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~---sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEI 404 (575)
.+++|+||+|||||.||.++++.+ +.+...++.+++.. ..+........+.. .....+|+|||+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~----------l~~~dlLilDDl 117 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKR----------LKRVDLLILDDL 117 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHH----------HHTSSCEEEETC
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCc----------cccccEeccccc
Confidence 689999999999999999999765 67777777776542 11111111111111 134569999998
Q ss_pred hhhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 405 DKITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 405 D~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
.....+ +...+.|.++++
T Consensus 118 G~~~~~------------~~~~~~l~~ii~ 135 (178)
T PF01695_consen 118 GYEPLS------------EWEAELLFEIID 135 (178)
T ss_dssp TSS---------------HHHHHCTHHHHH
T ss_pred ceeeec------------ccccccchhhhh
Confidence 654332 225677888888
No 248
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.79 E-value=8.5e-05 Score=89.08 Aligned_cols=137 Identities=20% Similarity=0.308 Sum_probs=89.8
Q ss_pred CCCCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhCCC--EEEeccccccc---------cccccchh---hhHH
Q 008176 316 CTTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATTLTQ---------AGYVGEDV---ESIL 380 (575)
Q Consensus 316 ~~~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~~--fv~v~~s~l~~---------sg~vGe~~---~~~l 380 (575)
++-.+++++++.+..+.-+ |+||+||||+|+...|-+..+.. -+.+|+.++.. .+.|++.+ ...+
T Consensus 1001 P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TI 1080 (1228)
T KOG0055|consen 1001 PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTI 1080 (1228)
T ss_pred CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccH
Confidence 4567899999999998777 99999999999999999988533 46677766543 33444432 0111
Q ss_pred HH-------------Hhhhchh----h-----------------------------H---HhhccCeEeehhHhhhhHhh
Q 008176 381 YK-------------LLTVSDY----N-----------------------------V---AAAQQGIVYIDEVDKITKKA 411 (575)
Q Consensus 381 ~~-------------lf~~a~~----~-----------------------------l---~~~~~~ILfIDEID~l~~~r 411 (575)
++ ..+.++. + + --.+|.||+|||+......
T Consensus 1081 rENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDs- 1159 (1228)
T KOG0055|consen 1081 RENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDS- 1159 (1228)
T ss_pred HHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhh-
Confidence 11 1111100 0 0 1246999999998887655
Q ss_pred hhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCC
Q 008176 412 ESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGA 468 (575)
Q Consensus 412 ~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn 468 (575)
++.+.||++|-++++|+++.| ..|+...+-++..|.++-.|.
T Consensus 1160 --------eSErvVQeALd~a~~gRT~Iv-------IAHRLSTIqnaD~I~Vi~~G~ 1201 (1228)
T KOG0055|consen 1160 --------ESERVVQEALDRAMEGRTTIV-------IAHRLSTIQNADVIAVLKNGK 1201 (1228)
T ss_pred --------hhHHHHHHHHHHhhcCCcEEE-------EecchhhhhcCCEEEEEECCE
Confidence 233459999999999876654 355555555566666655543
No 249
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.78 E-value=6.8e-05 Score=76.80 Aligned_cols=72 Identities=22% Similarity=0.374 Sum_probs=46.0
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHh---CCCEEEecccccccc---ccccchhhhHHHHHhhhchhhHHhhccCeEeehh
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~s---g~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDE 403 (575)
..+++|+||||||||.||-||++.+ |..+..+...++... .+-....+..+... ...--+|+|||
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---------l~~~dlLIiDD 175 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---------LKKVDLLIIDD 175 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH---------hhcCCEEEEec
Confidence 3689999999999999999999876 567777777665420 00000001111111 13456999999
Q ss_pred HhhhhHh
Q 008176 404 VDKITKK 410 (575)
Q Consensus 404 ID~l~~~ 410 (575)
+-.....
T Consensus 176 lG~~~~~ 182 (254)
T COG1484 176 IGYEPFS 182 (254)
T ss_pred ccCccCC
Confidence 8875543
No 250
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.77 E-value=8.9e-05 Score=65.70 Aligned_cols=23 Identities=48% Similarity=0.719 Sum_probs=20.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC
Q 008176 333 ILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
|.|+||||+|||++|+.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999997764
No 251
>PRK06921 hypothetical protein; Provisional
Probab=97.75 E-value=5.1e-05 Score=78.16 Aligned_cols=35 Identities=34% Similarity=0.462 Sum_probs=27.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh----CCCEEEecccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATT 365 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l----~~~fv~v~~s~ 365 (575)
.+++|+|++|+|||+||.++|+.+ +..++.+...+
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~ 156 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVE 156 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHH
Confidence 578999999999999999999876 34555555444
No 252
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.74 E-value=0.00021 Score=74.39 Aligned_cols=62 Identities=24% Similarity=0.453 Sum_probs=44.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC--
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~-- 355 (575)
..+||-.|.+..-..+. .. ..+ + +..+.+|+.|+||+|||.+|-.+++.+|
T Consensus 41 GmVGQ~~AR~Aagvi~k--mi--~eg-k----------------------iaGraiLiaG~pgtGKtAiAmg~sksLG~~ 93 (454)
T KOG2680|consen 41 GMVGQVKARKAAGVILK--MI--REG-K----------------------IAGRAILIAGQPGTGKTAIAMGMSKSLGDD 93 (454)
T ss_pred cchhhHHHHHHhHHHHH--HH--HcC-c----------------------ccceEEEEecCCCCCceeeeeehhhhhCCC
Confidence 47999988887665553 11 010 0 2236789999999999999999999885
Q ss_pred CCEEEeccccc
Q 008176 356 VPFVIADATTL 366 (575)
Q Consensus 356 ~~fv~v~~s~l 366 (575)
.||..+.++++
T Consensus 94 tpF~~i~gSEI 104 (454)
T KOG2680|consen 94 TPFTSISGSEI 104 (454)
T ss_pred Cceeeeeccee
Confidence 46777766663
No 253
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=97.74 E-value=0.00013 Score=80.00 Aligned_cols=138 Identities=20% Similarity=0.345 Sum_probs=88.1
Q ss_pred CCCCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhCCC--EEEeccccccc---------cccccchh-------
Q 008176 316 CTTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATTLTQ---------AGYVGEDV------- 376 (575)
Q Consensus 316 ~~~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~~--fv~v~~s~l~~---------sg~vGe~~------- 376 (575)
...+++++++++++++..+ |+||+|.||+|+.|.+-+..+.. -+.+|+.++.. .|.+.++.
T Consensus 549 p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI 628 (790)
T KOG0056|consen 549 PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTI 628 (790)
T ss_pred CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeeccee
Confidence 3678999999999999888 99999999999999999887533 35566555332 11111110
Q ss_pred ------------hhHHHHHhhhc---------h--h-----------------hH-----HhhccCeEeehhHhhhhHhh
Q 008176 377 ------------ESILYKLLTVS---------D--Y-----------------NV-----AAAQQGIVYIDEVDKITKKA 411 (575)
Q Consensus 377 ------------~~~l~~lf~~a---------~--~-----------------~l-----~~~~~~ILfIDEID~l~~~r 411 (575)
...+...-..| + + .+ -..+|+||++||+......
T Consensus 629 ~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT- 707 (790)
T KOG0056|consen 629 LYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDT- 707 (790)
T ss_pred eeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCC-
Confidence 00000000000 0 0 00 1357999999998876543
Q ss_pred hhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCC
Q 008176 412 ESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (575)
Q Consensus 412 ~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~ 469 (575)
...+.+|.+|-++-.+++..| ..|+...+++++-|++|-.|..
T Consensus 708 --------~tER~IQaaL~rlca~RTtIV-------vAHRLSTivnAD~ILvi~~G~I 750 (790)
T KOG0056|consen 708 --------NTERAIQAALARLCANRTTIV-------VAHRLSTIVNADLILVISNGRI 750 (790)
T ss_pred --------ccHHHHHHHHHHHhcCCceEE-------EeeeehheecccEEEEEeCCeE
Confidence 223448888888888765544 4566777788888887776654
No 254
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=8.2e-05 Score=77.65 Aligned_cols=86 Identities=21% Similarity=0.101 Sum_probs=53.8
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCC----------------EEEeccccccccccccchhhhHHHHHhhhchhhHHhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVP----------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAA 394 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~----------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~ 394 (575)
+.+||+||.|+||+++|.++|+.+-+. +..+....- ...++ ...++++...........
T Consensus 20 HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~--~~~I~---idqiR~l~~~~~~~p~e~ 94 (290)
T PRK05917 20 SAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK--GRLHS---IETPRAIKKQIWIHPYES 94 (290)
T ss_pred eeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC--CCcCc---HHHHHHHHHHHhhCccCC
Confidence 577899999999999999999877331 111110000 00111 122333332221111124
Q ss_pred ccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 395 QQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 395 ~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
...|++||++|++..+ .+|+||+.||+
T Consensus 95 ~~kv~ii~~ad~mt~~--------------AaNaLLK~LEE 121 (290)
T PRK05917 95 PYKIYIIHEADRMTLD--------------AISAFLKVLED 121 (290)
T ss_pred CceEEEEechhhcCHH--------------HHHHHHHHhhc
Confidence 5569999999999987 89999999995
No 255
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.74 E-value=0.00019 Score=81.56 Aligned_cols=110 Identities=20% Similarity=0.324 Sum_probs=67.7
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh----------CCCEEEeccccccccc---------cccchhh-----hHHHHHhhhc
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV----------NVPFVIADATTLTQAG---------YVGEDVE-----SILYKLLTVS 387 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l----------~~~fv~v~~s~l~~sg---------~vGe~~~-----~~l~~lf~~a 387 (575)
-+.+.|-||||||.+++.+-+.+ ...++++++..+.... +-|+... ..+..-|..
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~- 502 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV- 502 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc-
Confidence 45599999999999999997755 3567889988776421 1222210 111111111
Q ss_pred hhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecC
Q 008176 388 DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGG 467 (575)
Q Consensus 388 ~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tg 467 (575)
.-.....+||+|||.|.+... -|..|..++|= . ....+.+++|+-+
T Consensus 503 --~k~~~~~~VvLiDElD~Lvtr--------------~QdVlYn~fdW------------p------t~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 503 --PKPKRSTTVVLIDELDILVTR--------------SQDVLYNIFDW------------P------TLKNSKLVVIAIA 548 (767)
T ss_pred --CCCCCCCEEEEeccHHHHhcc--------------cHHHHHHHhcC------------C------cCCCCceEEEEec
Confidence 112356789999999999875 47778888771 1 1123446667766
Q ss_pred CCcChHHHH
Q 008176 468 AFVDIEKTI 476 (575)
Q Consensus 468 n~~dL~~~i 476 (575)
|..|+.+-+
T Consensus 549 NTmdlPEr~ 557 (767)
T KOG1514|consen 549 NTMDLPERL 557 (767)
T ss_pred ccccCHHHH
Confidence 666654433
No 256
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.00033 Score=73.19 Aligned_cols=120 Identities=18% Similarity=0.200 Sum_probs=66.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEE--Eecc---c---ccc---ccc--cc---cchh-hhHHHHHhhhchhhHHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV--IADA---T---TLT---QAG--YV---GEDV-ESILYKLLTVSDYNVAA 393 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv--~v~~---s---~l~---~sg--~v---Ge~~-~~~l~~lf~~a~~~l~~ 393 (575)
+.+||+|| +||+++|+.+|+.+.+.-. ...| . .+. .++ ++ |..+ ...++++..........
T Consensus 25 hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~ 102 (290)
T PRK07276 25 HAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSGYE 102 (290)
T ss_pred eeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCccc
Confidence 57789996 6899999999987632100 0001 0 000 011 11 1100 12334433322211122
Q ss_pred hccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEE-ecCCCcCh
Q 008176 394 AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFI-CGGAFVDI 472 (575)
Q Consensus 394 ~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I-~tgn~~dL 472 (575)
....|++||++|+|... ..|+||+.||+ ...+++|| +|.+...+
T Consensus 103 ~~~kV~II~~ad~m~~~--------------AaNaLLKtLEE---------------------Pp~~t~~iL~t~~~~~l 147 (290)
T PRK07276 103 GKQQVFIIKDADKMHVN--------------AANSLLKVIEE---------------------PQSEIYIFLLTNDENKV 147 (290)
T ss_pred CCcEEEEeehhhhcCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEEECChhhC
Confidence 45679999999999987 89999999995 12234444 45555556
Q ss_pred HHHHHhhhcccCCCCCC
Q 008176 473 EKTISERRQDSSIGFGA 489 (575)
Q Consensus 473 ~~~i~~rr~~~~IgF~~ 489 (575)
-..++.|.. .+.|+.
T Consensus 148 LpTI~SRcq--~i~f~~ 162 (290)
T PRK07276 148 LPTIKSRTQ--IFHFPK 162 (290)
T ss_pred chHHHHcce--eeeCCC
Confidence 677776653 455543
No 257
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.72 E-value=9.3e-05 Score=76.53 Aligned_cols=139 Identities=16% Similarity=0.212 Sum_probs=70.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCC-C--EEEeccccccccccccchhhhHHHHHhhh----chh---hHHhhccCeEe
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNV-P--FVIADATTLTQAGYVGEDVESILYKLLTV----SDY---NVAAAQQGIVY 400 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~-~--fv~v~~s~l~~sg~vGe~~~~~l~~lf~~----a~~---~l~~~~~~ILf 400 (575)
.++||+||+|||||++++.+-+.+.. . ...++++..+. ...+.+.++. ... .....+..|+|
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt--------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT--------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH--------HHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC--------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 68999999999999999887655432 2 23344444332 2223332221 111 11224567999
Q ss_pred ehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhh
Q 008176 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (575)
Q Consensus 401 IDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr 480 (575)
||+++.-.++.- +.......|.++||.+ .-++.. +.-.....++.++++.+...-...+..|.
T Consensus 106 iDDlN~p~~d~y--------gtq~~iElLRQ~i~~~--------g~yd~~-~~~~~~i~~i~~vaa~~p~~Gr~~is~R~ 168 (272)
T PF12775_consen 106 IDDLNMPQPDKY--------GTQPPIELLRQLIDYG--------GFYDRK-KLEWKSIEDIQFVAAMNPTGGRNPISPRF 168 (272)
T ss_dssp EETTT-S---TT--------S--HHHHHHHHHHHCS--------EEECTT-TTEEEEECSEEEEEEESSTTT--SHHHHH
T ss_pred ecccCCCCCCCC--------CCcCHHHHHHHHHHhc--------CcccCC-CcEEEEEeeeEEEEecCCCCCCCCCChHH
Confidence 999988665421 1122567777788821 112211 11234556788888876543223355554
Q ss_pred ccc--CCCCCCchhhh
Q 008176 481 QDS--SIGFGAPVRAN 494 (575)
Q Consensus 481 ~~~--~IgF~~p~~e~ 494 (575)
.+. .+.++.|+.+.
T Consensus 169 ~r~f~i~~~~~p~~~s 184 (272)
T PF12775_consen 169 LRHFNILNIPYPSDES 184 (272)
T ss_dssp HTTEEEEE----TCCH
T ss_pred hhheEEEEecCCChHH
Confidence 333 46667776665
No 258
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.70 E-value=6.9e-05 Score=86.84 Aligned_cols=38 Identities=26% Similarity=0.411 Sum_probs=34.4
Q ss_pred CCCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 317 ~~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
++.++++++++++++..+ ++|++|||||||+|.+.+..
T Consensus 485 ~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 485 DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457999999999988766 99999999999999999776
No 259
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00011 Score=81.54 Aligned_cols=134 Identities=29% Similarity=0.462 Sum_probs=92.3
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhH
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~ 409 (575)
+.+++++||||+|||+++++++.. +..+..+++.+.. ..+.|+. +..++..+..+.. ..++++++||+|.+.+
T Consensus 18 ~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~a~~----~~~~ii~~d~~~~~~~ 90 (494)
T COG0464 18 PKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEIL-SKYVGES-ELRLRELFEEAEK----LAPSIIFIDEIDALAP 90 (494)
T ss_pred CCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhh-hhhhhHH-HHHHHHHHHHHHH----hCCCeEeechhhhccc
Confidence 468999999999999999999998 5555666666655 5688887 6667777776653 4569999999999999
Q ss_pred hhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHH-hhhcccCCCC
Q 008176 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGF 487 (575)
Q Consensus 410 ~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~-~rr~~~~IgF 487 (575)
.+.. ........+...|+..|++.. ... ++++..++..+ ++.+.+ ..+++..+..
T Consensus 91 ~~~~---~~~~~~~~v~~~l~~~~d~~~-------------------~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (494)
T COG0464 91 KRSS---DQGEVERRVVAQLLALMDGLK-------------------RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEV 147 (494)
T ss_pred Cccc---cccchhhHHHHHHHHhccccc-------------------CCc-eEEEeecCCccccChhHhCccccceeeec
Confidence 8765 233334458999999999521 112 33343444444 443332 3366777776
Q ss_pred CCchhh
Q 008176 488 GAPVRA 493 (575)
Q Consensus 488 ~~p~~e 493 (575)
..++..
T Consensus 148 ~~~~~~ 153 (494)
T COG0464 148 NLPDEA 153 (494)
T ss_pred CCCCHH
Confidence 666654
No 260
>PF05729 NACHT: NACHT domain
Probab=97.67 E-value=0.00087 Score=61.73 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.4
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l 354 (575)
-+++.|+||+|||++++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 36799999999999999998665
No 261
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.66 E-value=0.00029 Score=72.82 Aligned_cols=90 Identities=26% Similarity=0.400 Sum_probs=52.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh-CC--CEEEecccc---------------------ccccccccchhhhHHHHHhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV-NV--PFVIADATT---------------------LTQAGYVGEDVESILYKLLTV 386 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l-~~--~fv~v~~s~---------------------l~~sg~vGe~~~~~l~~lf~~ 386 (575)
.|++++||+|+||-|.+.++-+.+ |. +=..+.... ++++ -.|.-..-.+.+++..
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPS-DaG~~DRvViQellKe 113 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPS-DAGNYDRVVIQELLKE 113 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChh-hcCcccHHHHHHHHHH
Confidence 599999999999999999998776 31 101111111 1112 1222112222333221
Q ss_pred -c---hhhH-HhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 387 -S---DYNV-AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 387 -a---~~~l-~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
| ..+. .+..-.+|+|.|+|.+..+ +|.+|.+-||.
T Consensus 114 vAQt~qie~~~qr~fKvvvi~ead~LT~d--------------AQ~aLRRTMEk 153 (351)
T KOG2035|consen 114 VAQTQQIETQGQRPFKVVVINEADELTRD--------------AQHALRRTMEK 153 (351)
T ss_pred HHhhcchhhccccceEEEEEechHhhhHH--------------HHHHHHHHHHH
Confidence 1 1111 1123469999999999987 89999999993
No 262
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.65 E-value=0.00014 Score=87.17 Aligned_cols=51 Identities=25% Similarity=0.478 Sum_probs=41.2
Q ss_pred CCCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhCCC--EEEecccccc
Q 008176 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATTLT 367 (575)
Q Consensus 317 ~~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~~--fv~v~~s~l~ 367 (575)
+-.+|+++++.++++..+ |+||+||||||+.+.+.+..+-. -+.+|+.++.
T Consensus 365 dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~ 418 (1228)
T KOG0055|consen 365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIR 418 (1228)
T ss_pred cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccch
Confidence 447899999999999777 99999999999999999988533 2455665543
No 263
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.00034 Score=76.09 Aligned_cols=71 Identities=18% Similarity=0.293 Sum_probs=41.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhC-----CCEEEeccccccccccccchhhhHHHH-HhhhchhhHHhhccCeEeehhH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVN-----VPFVIADATTLTQAGYVGEDVESILYK-LLTVSDYNVAAAQQGIVYIDEV 404 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~-----~~fv~v~~s~l~~sg~vGe~~~~~l~~-lf~~a~~~l~~~~~~ILfIDEI 404 (575)
..++|+|++|.|||.|++|+++... ..++.+....+.. .++ ..+++ .....+ ....-.+++||+|
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~-~~v-----~a~~~~~~~~Fk---~~y~~dlllIDDi 184 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTN-DFV-----KALRDNEMEKFK---EKYSLDLLLIDDI 184 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHH-HHH-----HHHHhhhHHHHH---HhhccCeeeechH
Confidence 4688999999999999999998762 2344444433221 011 11111 101111 0113348999999
Q ss_pred hhhhHh
Q 008176 405 DKITKK 410 (575)
Q Consensus 405 D~l~~~ 410 (575)
+.+..+
T Consensus 185 q~l~gk 190 (408)
T COG0593 185 QFLAGK 190 (408)
T ss_pred hHhcCC
Confidence 999765
No 264
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.63 E-value=0.00024 Score=79.14 Aligned_cols=194 Identities=20% Similarity=0.280 Sum_probs=110.0
Q ss_pred HHhhhcccccChHHHHHHHHHHHHhhh-hhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHH
Q 008176 271 ICKGLDKFVIGQERAKKVLSVAVYNHY-MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKT 349 (575)
Q Consensus 271 l~~~Ld~~VvGqd~ak~~L~~al~~~~-~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAra 349 (575)
+.+.|..-|.|.+.+|+.|..++.--. +.+..+.+. ...-++||+|.|-+.|+-|.|.
T Consensus 295 La~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshl---------------------RGDINiLlvGDPSvAKSQLLRy 353 (818)
T KOG0479|consen 295 LARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHL---------------------RGDINILLVGDPSVAKSQLLRY 353 (818)
T ss_pred HhhccCcccccHHHHHHHHHHHHhccceeccCCCcee---------------------ccceeEEEecCchHHHHHHHHH
Confidence 445666779999999999988774110 111111111 1235899999999999999999
Q ss_pred HHHHhCCCEEEec-ccc---ccc----cccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcc
Q 008176 350 LARYVNVPFVIAD-ATT---LTQ----AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVS 421 (575)
Q Consensus 350 LA~~l~~~fv~v~-~s~---l~~----sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~ 421 (575)
+-+..-..+-..- ++. ++. ..-.|+ +.+ =..| ...+..|||.|||+|+|..-
T Consensus 354 VLntAplAI~TTGRGSSGVGLTAAVTtD~eTGE---RRL---EAGA---MVLADRGVVCIDEFDKMsDi----------- 413 (818)
T KOG0479|consen 354 VLNTAPLAIATTGRGSSGVGLTAAVTTDQETGE---RRL---EAGA---MVLADRGVVCIDEFDKMSDI----------- 413 (818)
T ss_pred HHhcccccccccCCCCCCccceeEEeeccccch---hhh---hcCc---eEEccCceEEehhcccccch-----------
Confidence 8765422221100 000 110 001121 111 0111 12367899999999999764
Q ss_pred hHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhhccCCCC
Q 008176 422 GEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501 (575)
Q Consensus 422 ~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~~~~~l~ 501 (575)
=.-++-++||..+|+|...|.-... ..++-++++.|+.- .+--.+..|.
T Consensus 414 ---DRvAIHEVMEQqtVTIaKAGIHasL--------NARCSVlAAANPvy----------G~Yd~~k~P~---------- 462 (818)
T KOG0479|consen 414 ---DRVAIHEVMEQQTVTIAKAGIHASL--------NARCSVLAAANPVY----------GQYDQSKTPM---------- 462 (818)
T ss_pred ---hHHHHHHHHhcceEEeEeccchhhh--------ccceeeeeecCccc----------cccCCCCChh----------
Confidence 3568999999888887555533222 23355666666421 0000111111
Q ss_pred hHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhH
Q 008176 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPK 553 (575)
Q Consensus 502 ~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l 553 (575)
..-|+...+++||+.++...+-...+..+.+.+..
T Consensus 463 -----------------eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHV 497 (818)
T KOG0479|consen 463 -----------------ENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHV 497 (818)
T ss_pred -----------------hccCCcHHHHhhhcEEEEEeccccchHHHHHHHHH
Confidence 11246778899999887777665556666666433
No 265
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.63 E-value=0.00024 Score=79.75 Aligned_cols=32 Identities=34% Similarity=0.411 Sum_probs=27.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEec
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~ 362 (575)
.-+||+||+||||||++++||++++..+.+..
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 34569999999999999999999998877643
No 266
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.61 E-value=0.00013 Score=73.75 Aligned_cols=66 Identities=26% Similarity=0.343 Sum_probs=48.4
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHh
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~ 410 (575)
...+.||+|||||.+++.+|+.+|..++..+|++-.+ ...+.+.+... +..++.+.+||++++..+
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~--------~~~l~ril~G~-----~~~GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD--------YQSLSRILKGL-----AQSGAWLCFDEFNRLSEE 99 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS---------HHHHHHHHHHH-----HHHT-EEEEETCCCSSHH
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc--------HHHHHHHHHHH-----hhcCchhhhhhhhhhhHH
Confidence 4568999999999999999999999999999998553 22333333322 245789999999999876
No 267
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.59 E-value=0.00019 Score=75.43 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=29.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l 366 (575)
.+++|+||+|||||+||.++|+.+ +..+..+...++
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l 195 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEF 195 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHH
Confidence 589999999999999999999887 566666665553
No 268
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.00053 Score=70.53 Aligned_cols=121 Identities=16% Similarity=0.094 Sum_probs=69.4
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHhCCCEEEecccc------ccc---cc---------cccchhhhHHHHHhhhchhhH
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT------LTQ---AG---------YVGEDVESILYKLLTVSDYNV 391 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~------l~~---sg---------~vGe~~~~~l~~lf~~a~~~l 391 (575)
++.+||+||.|+||..+|.++|+.+-+.--.-.|.. +.. ++ -++. ..++++........
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~i---d~ir~l~~~l~~~s 83 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKK---EDALSIINKLNRPS 83 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCH---HHHHHHHHHHccCc
Confidence 467889999999999999999977622100000110 000 00 1111 12233322211111
Q ss_pred -HhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEec-CCC
Q 008176 392 -AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG-GAF 469 (575)
Q Consensus 392 -~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~t-gn~ 469 (575)
......|++||++|++... ..|+||+.+|+ ...+++||.. .+.
T Consensus 84 ~e~~~~KV~II~~ae~m~~~--------------AaNaLLK~LEE---------------------Pp~~t~fiLit~~~ 128 (261)
T PRK05818 84 VESNGKKIYIIYGIEKLNKQ--------------SANSLLKLIEE---------------------PPKNTYGIFTTRNE 128 (261)
T ss_pred hhcCCCEEEEeccHhhhCHH--------------HHHHHHHhhcC---------------------CCCCeEEEEEECCh
Confidence 1134579999999999987 89999999995 1233445544 444
Q ss_pred cChHHHHHhhhcccCCCCCCc
Q 008176 470 VDIEKTISERRQDSSIGFGAP 490 (575)
Q Consensus 470 ~dL~~~i~~rr~~~~IgF~~p 490 (575)
..+-..++.|.+ .+.|+.+
T Consensus 129 ~~lLpTI~SRCq--~~~~~~~ 147 (261)
T PRK05818 129 NNILNTILSRCV--QYVVLSK 147 (261)
T ss_pred HhCchHhhhhee--eeecCCh
Confidence 457777777643 3445544
No 269
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.58 E-value=0.00037 Score=71.39 Aligned_cols=49 Identities=33% Similarity=0.582 Sum_probs=38.7
Q ss_pred CCCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhCCC--EEEecccc
Q 008176 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATT 365 (575)
Q Consensus 317 ~~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~~--fv~v~~s~ 365 (575)
...+++++++.++.+.++ |+||+||||||+.|.|-+.+... -+.+++.+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~ 64 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGED 64 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCee
Confidence 456789999999999888 99999999999999999877322 23444444
No 270
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.55 E-value=0.00033 Score=63.94 Aligned_cols=33 Identities=48% Similarity=0.619 Sum_probs=26.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHh---CCCEEEecccc
Q 008176 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~ 365 (575)
++++|+||+|||++++.++... +.+++.++...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~ 37 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEE 37 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 6899999999999999998776 45565555543
No 271
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.53 E-value=0.00022 Score=73.40 Aligned_cols=37 Identities=24% Similarity=0.482 Sum_probs=34.5
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.++++|++.+.++.++ |+|++||||||++|++.+...
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 5789999999999999 999999999999999998874
No 272
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.0014 Score=68.83 Aligned_cols=83 Identities=19% Similarity=0.273 Sum_probs=53.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCC-----------C--EEEeccccccccccccchh-hhHHHHHhhhchhhH-Hhhc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNV-----------P--FVIADATTLTQAGYVGEDV-ESILYKLLTVSDYNV-AAAQ 395 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~-----------~--fv~v~~s~l~~sg~vGe~~-~~~l~~lf~~a~~~l-~~~~ 395 (575)
+..||+|+.|.||+++|+.+++.+.+ | +..++. .|... ...++.+.+...... ....
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~--------~g~~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI--------FDKDLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc--------CCCcCCHHHHHHHHHHhccCCcccCC
Confidence 56679999999999999999988622 1 122220 01110 123334333322211 1136
Q ss_pred cCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 396 ~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
..|++||++|++... .+++||+.||+
T Consensus 91 ~KvvII~~~e~m~~~--------------a~NaLLK~LEE 116 (299)
T PRK07132 91 KKILIIKNIEKTSNS--------------LLNALLKTIEE 116 (299)
T ss_pred ceEEEEecccccCHH--------------HHHHHHHHhhC
Confidence 679999999999876 89999999994
No 273
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.51 E-value=0.00013 Score=90.43 Aligned_cols=123 Identities=25% Similarity=0.278 Sum_probs=90.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccc-cccccchhhhHH-HHHhhhchhhHHhhccCeEeehhHhhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGEDVESIL-YKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~-sg~vGe~~~~~l-~~lf~~a~~~l~~~~~~ILfIDEID~l~ 408 (575)
..+||.||+|+|||.+++-+|+..+..+++++-.+.+. ..|+|.-+.... .-.|......-+..++..+++||++...
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~ 520 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDELNLAP 520 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhCCEEEeccccccc
Confidence 48999999999999999999999999999988776443 235552110000 0011111111133578899999999988
Q ss_pred HhhhhcccCCCcchHHHHHHHHHHhhC-CeecccCCCcccCCCCCcceecCCCEEEEecC
Q 008176 409 KKAESLNISRDVSGEGVQQALLKMLEG-TVVNVPEKGARKHPRGDNIQIDTKDILFICGG 467 (575)
Q Consensus 409 ~~r~~~~~~~~~~~e~vq~aLL~~LEg-~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tg 467 (575)
.+ +..+|.++++. +.+.+|+.....+.|.......|.|..-..++
T Consensus 521 ~d--------------vL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~g 566 (1856)
T KOG1808|consen 521 HD--------------VLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGG 566 (1856)
T ss_pred hH--------------HHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccch
Confidence 77 99999999994 89999999999999998888888887544443
No 274
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.45 E-value=0.00012 Score=65.01 Aligned_cols=30 Identities=47% Similarity=0.790 Sum_probs=26.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCEEEec
Q 008176 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l~~~fv~v~ 362 (575)
+++.|+||+||||+|+.||+.++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 679999999999999999999987776444
No 275
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.42 E-value=0.00037 Score=78.60 Aligned_cols=40 Identities=30% Similarity=0.491 Sum_probs=36.0
Q ss_pred CCCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhCC
Q 008176 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV 356 (575)
Q Consensus 317 ~~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~ 356 (575)
+..+++++++.++++..+ ++||+|+||||+++.+.+..+.
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 457899999999999888 9999999999999999988853
No 276
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.41 E-value=0.0014 Score=68.76 Aligned_cols=72 Identities=22% Similarity=0.319 Sum_probs=47.9
Q ss_pred hHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHH
Q 008176 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (575)
Q Consensus 268 ~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLA 347 (575)
.+.+..--.+..||..+|++.|..+-. +...-++ ..-.++||+|+++.|||+++
T Consensus 25 ~eRI~~i~~~rWIgY~~A~~~L~~L~~-----Ll~~P~~---------------------~Rmp~lLivG~snnGKT~Ii 78 (302)
T PF05621_consen 25 EERIAYIRADRWIGYPRAKEALDRLEE-----LLEYPKR---------------------HRMPNLLIVGDSNNGKTMII 78 (302)
T ss_pred HHHHHHHhcCCeecCHHHHHHHHHHHH-----HHhCCcc---------------------cCCCceEEecCCCCcHHHHH
Confidence 344555556789999999988876553 1111111 01257899999999999999
Q ss_pred HHHHHHh---------CCCEEEecccc
Q 008176 348 KTLARYV---------NVPFVIADATT 365 (575)
Q Consensus 348 raLA~~l---------~~~fv~v~~s~ 365 (575)
+..++.. ..|++.+++..
T Consensus 79 ~rF~~~hp~~~d~~~~~~PVv~vq~P~ 105 (302)
T PF05621_consen 79 ERFRRLHPPQSDEDAERIPVVYVQMPP 105 (302)
T ss_pred HHHHHHCCCCCCCCCccccEEEEecCC
Confidence 9998655 23566666543
No 277
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.40 E-value=0.00024 Score=80.40 Aligned_cols=37 Identities=27% Similarity=0.437 Sum_probs=33.6
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..+++++++.++++..+ ++||+|+|||||++.+++..
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45899999999988777 99999999999999999876
No 278
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.37 E-value=0.00032 Score=78.36 Aligned_cols=37 Identities=27% Similarity=0.496 Sum_probs=33.5
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..++++++++++++..+ ++||+|+|||||++++++..
T Consensus 348 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35899999999998777 99999999999999999876
No 279
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.28 E-value=0.0034 Score=59.74 Aligned_cols=31 Identities=35% Similarity=0.611 Sum_probs=28.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEe
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v 361 (575)
.++|++|-|||||||++..||...+.+++.+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 6899999999999999999999998888633
No 280
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.25 E-value=0.00073 Score=69.17 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.8
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCC
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~ 356 (575)
..++++||+|+||||+++.+++.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 46789999999999999999987743
No 281
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.23 E-value=0.00035 Score=65.41 Aligned_cols=31 Identities=32% Similarity=0.581 Sum_probs=27.8
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
+..++|+|+|||||||+|+.||+.++.+++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d 34 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFID 34 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 3578899999999999999999999988874
No 282
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.19 E-value=0.00045 Score=64.38 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=32.4
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ +.||+|+||||++++++...
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4688999999998777 99999999999999999876
No 283
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.17 E-value=0.0008 Score=77.82 Aligned_cols=37 Identities=27% Similarity=0.447 Sum_probs=33.3
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..++++++++++++..+ ++|++|+|||||++.+++..
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45899999999988766 99999999999999999876
No 284
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0036 Score=73.84 Aligned_cols=76 Identities=26% Similarity=0.375 Sum_probs=52.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh----------CCCEEEecccccc-ccccccchhhhHHHHHhhhchhhHHhhccCeE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV----------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIV 399 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l----------~~~fv~v~~s~l~-~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~IL 399 (575)
.+-+|+|.||+|||.++.-+++.. +..++.++...+. .+.+.|+ ++..+..+....+. ...+.||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge-~E~rlk~l~k~v~~---~~~gvIL 284 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGE-FEERLKELLKEVES---GGGGVIL 284 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchH-HHHHHHHHHHHHhc---CCCcEEE
Confidence 577999999999999999999766 2335555555433 1335555 36666666654332 2456789
Q ss_pred eehhHhhhhHh
Q 008176 400 YIDEVDKITKK 410 (575)
Q Consensus 400 fIDEID~l~~~ 410 (575)
||||++-+...
T Consensus 285 figelh~lvg~ 295 (898)
T KOG1051|consen 285 FLGELHWLVGS 295 (898)
T ss_pred EecceeeeecC
Confidence 99999999876
No 285
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.14 E-value=0.002 Score=64.03 Aligned_cols=36 Identities=28% Similarity=0.670 Sum_probs=31.7
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++..+ +.||+|||||||.+.+|...
T Consensus 19 ~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred hhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCc
Confidence 3678889999888776 99999999999999999876
No 286
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.12 E-value=0.0023 Score=64.45 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.8
Q ss_pred CccEEEEcCCCCChHHHHHHHH
Q 008176 330 KSNILLMGPTGSGKTLLAKTLA 351 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA 351 (575)
+..+|++|+||+||||+|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 3568999999999999999986
No 287
>PLN03130 ABC transporter C family member; Provisional
Probab=97.11 E-value=0.0011 Score=83.63 Aligned_cols=37 Identities=27% Similarity=0.419 Sum_probs=34.1
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
+.+|+++++.++++..+ ++|++|+|||||+++|.+.+
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~ 1289 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV 1289 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 46899999999999777 99999999999999999876
No 288
>PRK08118 topology modulation protein; Reviewed
Probab=97.11 E-value=0.00045 Score=66.24 Aligned_cols=32 Identities=44% Similarity=0.717 Sum_probs=28.8
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEecc
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~ 363 (575)
.++++||||+||||+|+.|++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58899999999999999999999999876664
No 289
>PLN03232 ABC transporter C family member; Provisional
Probab=97.09 E-value=0.0011 Score=82.96 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=34.0
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
+.+|+++++.++++..+ ++|++|+|||||+++|.+..
T Consensus 1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~ 1286 (1495)
T PLN03232 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV 1286 (1495)
T ss_pred CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56899999999999777 99999999999999999876
No 290
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.07 E-value=0.0011 Score=82.95 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=34.9
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhCC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV 356 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~ 356 (575)
.+|+++++.++++..+ |+||+||||||+++.|.+.+..
T Consensus 1182 ~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1182 PIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred ccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 5899999999999877 9999999999999999998764
No 291
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0028 Score=68.87 Aligned_cols=138 Identities=17% Similarity=0.268 Sum_probs=88.1
Q ss_pred CCCCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhCCC--EEEeccccccc---------cccccchh-------
Q 008176 316 CTTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATTLTQ---------AGYVGEDV------- 376 (575)
Q Consensus 316 ~~~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~~--fv~v~~s~l~~---------sg~vGe~~------- 376 (575)
.....|+++++.++.+..+ ++||.|+||+|+.+.+-+.++.. -+.++..++.. .|.+.++.
T Consensus 274 ~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti 353 (497)
T COG5265 274 PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTI 353 (497)
T ss_pred ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhH
Confidence 3567889999999988877 99999999999999999988543 35566655432 11111110
Q ss_pred ----------------h-----hHHHHHhhhchh------------------------hHHhhccCeEeehhHhhhhHhh
Q 008176 377 ----------------E-----SILYKLLTVSDY------------------------NVAAAQQGIVYIDEVDKITKKA 411 (575)
Q Consensus 377 ----------------~-----~~l~~lf~~a~~------------------------~l~~~~~~ILfIDEID~l~~~r 411 (575)
. ..+...+..-+. ..-.+.|.|+++||+......+
T Consensus 354 ~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~ 433 (497)
T COG5265 354 AYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTH 433 (497)
T ss_pred HHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhh
Confidence 0 000000000000 0023578999999998877653
Q ss_pred hhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCC
Q 008176 412 ESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (575)
Q Consensus 412 ~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~ 469 (575)
. ...+|.+|..+-.|+++.+ ..|+...++++..++++-.|..
T Consensus 434 t---------e~~iq~~l~~~~~~rttlv-------iahrlsti~~adeiivl~~g~i 475 (497)
T COG5265 434 T---------EQAIQAALREVSAGRTTLV-------IAHRLSTIIDADEIIVLDNGRI 475 (497)
T ss_pred H---------HHHHHHHHHHHhCCCeEEE-------EeehhhhccCCceEEEeeCCEE
Confidence 3 2337888887777765544 5677777888888887776653
No 292
>PRK13947 shikimate kinase; Provisional
Probab=97.06 E-value=0.00059 Score=64.42 Aligned_cols=31 Identities=39% Similarity=0.620 Sum_probs=28.2
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEec
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~ 362 (575)
+++|+|+||||||++|+.||+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6899999999999999999999999987544
No 293
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.06 E-value=0.0012 Score=71.57 Aligned_cols=83 Identities=16% Similarity=0.282 Sum_probs=47.2
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHhCC---CE--EEeccccc----cc--ccccc--------chhhhHH---HHHhhhc
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYVNV---PF--VIADATTL----TQ--AGYVG--------EDVESIL---YKLLTVS 387 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l~~---~f--v~v~~s~l----~~--sg~vG--------e~~~~~l---~~lf~~a 387 (575)
....+++||+|+|||+|++.|++.... .. +.+-..+. .+ ....| +.....+ ...++.+
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 357889999999999999999976632 11 11111111 00 00000 1111112 2344445
Q ss_pred hhhHHhhccCeEeehhHhhhhHhhh
Q 008176 388 DYNVAAAQQGIVYIDEVDKITKKAE 412 (575)
Q Consensus 388 ~~~l~~~~~~ILfIDEID~l~~~r~ 412 (575)
+.........+||||||+++.....
T Consensus 249 e~~~e~G~dVlL~iDsItR~arAqr 273 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRLARAYN 273 (416)
T ss_pred HHHHHcCCCEEEEEEChHHHHHHHH
Confidence 4444445778999999999987643
No 294
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.05 E-value=0.00084 Score=75.83 Aligned_cols=60 Identities=28% Similarity=0.401 Sum_probs=42.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh-CC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-NV 356 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l-~~ 356 (575)
++.|++++++.+.+.+.....++ .....-++|.||||+|||+||+.||+.+ ..
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl--------------------------~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGL--------------------------EEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhc--------------------------CCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 47999999999998884222211 0112456699999999999999999877 34
Q ss_pred CEEEecc
Q 008176 357 PFVIADA 363 (575)
Q Consensus 357 ~fv~v~~ 363 (575)
+++.+.+
T Consensus 131 ~~Y~~kg 137 (644)
T PRK15455 131 PIYVLKA 137 (644)
T ss_pred cceeecC
Confidence 5555544
No 295
>PHA00729 NTP-binding motif containing protein
Probab=97.05 E-value=0.00077 Score=68.08 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=22.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++|+|+||||||++|.+|++.++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999875
No 296
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.04 E-value=0.0015 Score=75.77 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=33.7
Q ss_pred CCCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 317 ~~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
...+++++++.++++..+ ++|++|+|||||++.+++..
T Consensus 486 ~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 346899999999888666 99999999999999999876
No 297
>PRK03839 putative kinase; Provisional
Probab=97.01 E-value=0.00064 Score=65.10 Aligned_cols=31 Identities=32% Similarity=0.423 Sum_probs=27.3
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEec
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~ 362 (575)
.++|+|+||+||||+++.||+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3789999999999999999999998886443
No 298
>PRK10536 hypothetical protein; Provisional
Probab=97.01 E-value=0.0056 Score=63.09 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
..++++||+|||||+||.+++..
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46779999999999999999873
No 299
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.00 E-value=0.0077 Score=59.14 Aligned_cols=89 Identities=20% Similarity=0.286 Sum_probs=47.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccc---cccchhhhHHHHHhhhchhhH-----HhhccCeE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAG---YVGEDVESILYKLLTVSDYNV-----AAAQQGIV 399 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg---~vGe~~~~~l~~lf~~a~~~l-----~~~~~~IL 399 (575)
+-+++.|+||||||++++.+...+ +..++.+..+.-.... -.|.. ...+...+....... ......+|
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~-a~Ti~~~l~~~~~~~~~~~~~~~~~~vl 97 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIE-AQTIHSFLYRIPNGDDEGRPELPKKDVL 97 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS--EEEHHHHTTEECCEECCSSCC-TSTSEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcc-hhhHHHHHhcCCcccccccccCCcccEE
Confidence 356689999999999999988665 4556555544321100 00110 111222222211100 02345799
Q ss_pred eehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 400 fIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
+|||+-.+... ....|+..++
T Consensus 98 iVDEasmv~~~--------------~~~~ll~~~~ 118 (196)
T PF13604_consen 98 IVDEASMVDSR--------------QLARLLRLAK 118 (196)
T ss_dssp EESSGGG-BHH--------------HHHHHHHHS-
T ss_pred EEecccccCHH--------------HHHHHHHHHH
Confidence 99999988765 5666666665
No 300
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.98 E-value=0.0015 Score=75.64 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=33.4
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..+++++++.++++..+ ++|++|+|||||++++++..
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999988666 99999999999999999876
No 301
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=96.97 E-value=0.0018 Score=81.37 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=34.4
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
+.+|+++++.++++..+ ++|++|+|||||+++|.+.+.
T Consensus 1299 ~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~ 1337 (1522)
T TIGR00957 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE 1337 (1522)
T ss_pred cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc
Confidence 46999999999999777 999999999999999998763
No 302
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.96 E-value=0.00084 Score=61.84 Aligned_cols=31 Identities=45% Similarity=0.760 Sum_probs=27.2
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEec
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~ 362 (575)
+++|+|+||+|||++|+.+|+.++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4789999999999999999999998886443
No 303
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.96 E-value=0.0023 Score=72.25 Aligned_cols=37 Identities=24% Similarity=0.500 Sum_probs=33.4
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..+++++++.++++..+ ++|++|+|||||++++++..
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45899999999888766 99999999999999999877
No 304
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.96 E-value=0.0007 Score=69.59 Aligned_cols=39 Identities=36% Similarity=0.555 Sum_probs=35.4
Q ss_pred CCCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 317 ~~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
...++++++++++++.++ +.||+|||||||.|++++.+.
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 456899999999999888 999999999999999998773
No 305
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.94 E-value=0.0025 Score=73.78 Aligned_cols=37 Identities=27% Similarity=0.598 Sum_probs=33.0
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..+++++++.++++..+ ++|++|+|||||++.+++..
T Consensus 470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~ 507 (694)
T TIGR01846 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY 507 (694)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45899999999888655 99999999999999999876
No 306
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.93 E-value=0.0021 Score=70.04 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=25.9
Q ss_pred CCcccccCc-cEEEEcCCCCChHHHHHHHHHHhC
Q 008176 323 DDTVELEKS-NILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 323 ~i~v~i~~~-~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
++.+.+.++ .++++||+|+|||++++.+++.+.
T Consensus 160 d~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 160 DLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred eeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 455555555 455999999999999999998763
No 307
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.93 E-value=0.0019 Score=74.57 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=34.1
Q ss_pred CCCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 317 ~~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+.++++++++++++..+ ++|++|+|||||++.+++..
T Consensus 465 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 465 GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356899999999988777 99999999999999999876
No 308
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.93 E-value=0.0018 Score=71.63 Aligned_cols=102 Identities=19% Similarity=0.205 Sum_probs=64.2
Q ss_pred CCChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCC---------CCCCCCCCCCCCcccccCccEE-
Q 008176 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGE---------SSSCTTDGVDDDTVELEKSNIL- 334 (575)
Q Consensus 265 ~~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~---------~~~~~~~~l~~i~v~i~~~~VL- 334 (575)
+...+..-+.++.. ++-.++-++|.+++...-..-.. ..-+.|.|. +.......+++++|.+.++..|
T Consensus 289 LaPid~aI~~Wkq~-~~Ar~s~~Rl~~lL~~~p~~~~~-m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lg 366 (580)
T COG4618 289 LAPIDLAIANWKQF-VAARQSYKRLNELLAELPAAAER-MPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALG 366 (580)
T ss_pred hccHHHHHHHHHHH-HHHHHHHHHHHHHHHhCccccCC-CCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEE
Confidence 33444455566653 55566666777766421111000 011111111 2334567899999999999999
Q ss_pred EEcCCCCChHHHHHHHHHHhC--CCEEEeccccccc
Q 008176 335 LMGPTGSGKTLLAKTLARYVN--VPFVIADATTLTQ 368 (575)
Q Consensus 335 L~GPpGTGKTtLAraLA~~l~--~~fv~v~~s~l~~ 368 (575)
++||+|+|||||||++....- .--+++|+.++.+
T Consensus 367 IIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~q 402 (580)
T COG4618 367 IIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ 402 (580)
T ss_pred EECCCCccHHHHHHHHHcccccCCCcEEecchhhhc
Confidence 999999999999999987652 2247778877654
No 309
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.93 E-value=0.0034 Score=77.10 Aligned_cols=138 Identities=17% Similarity=0.260 Sum_probs=91.0
Q ss_pred CCCCCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhCC--CEEEeccccccccc---------cccch-------
Q 008176 315 SCTTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQAG---------YVGED------- 375 (575)
Q Consensus 315 ~~~~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~--~fv~v~~s~l~~sg---------~vGe~------- 375 (575)
++.+.+|+++++.+.++.-+ ++|-+|+|||+|+.++-+.... --+.+|+-++...| .+.++
T Consensus 1150 p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGT 1229 (1381)
T KOG0054|consen 1150 PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGT 1229 (1381)
T ss_pred CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCc
Confidence 44678999999999999888 9999999999999999887742 12334444432200 11110
Q ss_pred -----------hhhHHHHHhhhchh--------------------h-------------HHhhccCeEeehhHhhhhHhh
Q 008176 376 -----------VESILYKLLTVSDY--------------------N-------------VAAAQQGIVYIDEVDKITKKA 411 (575)
Q Consensus 376 -----------~~~~l~~lf~~a~~--------------------~-------------l~~~~~~ILfIDEID~l~~~r 411 (575)
....+++.++.... + .-..+..||+|||+.+.-...
T Consensus 1230 vR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~ 1309 (1381)
T KOG0054|consen 1230 VRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPE 1309 (1381)
T ss_pred cccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChH
Confidence 02223333322110 0 012456799999987765543
Q ss_pred hhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCC
Q 008176 412 ESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGA 468 (575)
Q Consensus 412 ~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn 468 (575)
. +.-+|+++.+...+.+|.. ..|+-..++|.++++++-.|.
T Consensus 1310 T---------D~lIQ~tIR~~F~dcTVlt-------IAHRl~TVmd~DrVlVld~G~ 1350 (1381)
T KOG0054|consen 1310 T---------DALIQKTIREEFKDCTVLT-------IAHRLNTVMDSDRVLVLDAGR 1350 (1381)
T ss_pred H---------HHHHHHHHHHHhcCCeEEE-------EeeccchhhhcCeEEEeeCCe
Confidence 3 2348999999998766543 577888899999999988775
No 310
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.92 E-value=0.0023 Score=65.10 Aligned_cols=40 Identities=25% Similarity=0.358 Sum_probs=36.2
Q ss_pred CCCCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 316 CTTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 316 ~~~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
..-++|+++++++.++..+ |+|++|+|||||.|.||..+.
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~ 78 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK 78 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC
Confidence 3456899999999999999 999999999999999998873
No 311
>PRK00625 shikimate kinase; Provisional
Probab=96.91 E-value=0.00091 Score=64.72 Aligned_cols=31 Identities=39% Similarity=0.683 Sum_probs=28.1
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEec
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~ 362 (575)
+++|+|.||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999987554
No 312
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.91 E-value=0.0019 Score=73.25 Aligned_cols=37 Identities=35% Similarity=0.641 Sum_probs=33.3
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..+++++++.+.++..+ ++|++|+|||||++.+++..
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 45899999999988777 99999999999999999876
No 313
>PHA02774 E1; Provisional
Probab=96.90 E-value=0.0033 Score=71.14 Aligned_cols=76 Identities=18% Similarity=0.403 Sum_probs=49.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEE-EeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV-IADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv-~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~ 409 (575)
..++|+||||||||++|.+|++.++...+ .++... .-| +..+ ...-|++|||+..-.-
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~Fw--------Lqpl----------~d~ki~vlDD~t~~~w 493 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---HFW--------LQPL----------ADAKIALLDDATHPCW 493 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---ccc--------cchh----------ccCCEEEEecCcchHH
Confidence 56789999999999999999999865443 344321 001 1111 2334899999832211
Q ss_pred hhhhcccCCCcchHHHHHHHHHHhhCCeecc
Q 008176 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNV 440 (575)
Q Consensus 410 ~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~v 440 (575)
. -+...|..+|||..|+|
T Consensus 494 ~-------------y~d~~Lrn~LdG~~v~l 511 (613)
T PHA02774 494 D-------------YIDTYLRNALDGNPVSI 511 (613)
T ss_pred H-------------HHHHHHHHHcCCCccee
Confidence 1 15667889999887766
No 314
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.90 E-value=0.0045 Score=62.82 Aligned_cols=77 Identities=21% Similarity=0.329 Sum_probs=44.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhC--------CCEEEecccc-ccccccccchhhhHHHH--Hhhh---chh---hHHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVN--------VPFVIADATT-LTQAGYVGEDVESILYK--LLTV---SDY---NVAA 393 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~--------~~fv~v~~s~-l~~sg~vGe~~~~~l~~--lf~~---a~~---~l~~ 393 (575)
.+.|+.|||||||||+.|-+|+.+. ..+..+|-.+ +. .+..|...-..-+. .... +.. .+..
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIa-g~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIA-GCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhh-ccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 4789999999999999999998772 2345555443 32 23333321111000 0000 000 1234
Q ss_pred hccCeEeehhHhhhh
Q 008176 394 AQQGIVYIDEVDKIT 408 (575)
Q Consensus 394 ~~~~ILfIDEID~l~ 408 (575)
..|-|+++|||....
T Consensus 217 m~PEViIvDEIGt~~ 231 (308)
T COG3854 217 MSPEVIIVDEIGTEE 231 (308)
T ss_pred cCCcEEEEeccccHH
Confidence 678899999998764
No 315
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.89 E-value=0.0016 Score=62.76 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=20.2
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l 354 (575)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 57999999999999999998877
No 316
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.87 E-value=0.00067 Score=68.91 Aligned_cols=36 Identities=33% Similarity=0.621 Sum_probs=33.6
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |+|++|||||||+++++...
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 4789999999999999 99999999999999999765
No 317
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.87 E-value=0.00068 Score=67.96 Aligned_cols=48 Identities=23% Similarity=0.463 Sum_probs=38.3
Q ss_pred CCCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh--CCCEEEeccc
Q 008176 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV--NVPFVIADAT 364 (575)
Q Consensus 317 ~~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l--~~~fv~v~~s 364 (575)
..++|+++++++.++.++ ++||+|+||||+.|+|...- ..--+.+++.
T Consensus 14 ~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~ 64 (240)
T COG1126 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGE 64 (240)
T ss_pred CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCE
Confidence 567899999999999988 99999999999999998543 2223445553
No 318
>PRK07261 topology modulation protein; Provisional
Probab=96.86 E-value=0.0017 Score=62.32 Aligned_cols=34 Identities=35% Similarity=0.577 Sum_probs=29.0
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEecccc
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~ 365 (575)
.++++|+||+||||+|+.|++.++.+++..+.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 3789999999999999999999998887665433
No 319
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.85 E-value=0.00072 Score=61.51 Aligned_cols=25 Identities=52% Similarity=0.802 Sum_probs=22.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 333 ILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+++.|+||+||||+|+.+++.++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~ 26 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAV 26 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCE
Confidence 6799999999999999999988733
No 320
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0036 Score=70.26 Aligned_cols=37 Identities=22% Similarity=0.484 Sum_probs=33.1
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.++++++++++++... |+|++|+||||+..++++.+.
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~ 372 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA 372 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC
Confidence 6788999999988777 999999999999999998773
No 321
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.84 E-value=0.0019 Score=60.44 Aligned_cols=37 Identities=32% Similarity=0.662 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++.+.++.++ |.|++|+||||++++++..+.
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4788999999988777 999999999999999998763
No 322
>PRK06217 hypothetical protein; Validated
Probab=96.83 E-value=0.0012 Score=63.78 Aligned_cols=31 Identities=35% Similarity=0.617 Sum_probs=27.8
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEec
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~ 362 (575)
.|+|+|++|+||||+|++|++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5899999999999999999999998876554
No 323
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.83 E-value=0.0022 Score=74.55 Aligned_cols=37 Identities=30% Similarity=0.474 Sum_probs=33.9
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..++++++++++++..+ ++||+|+||||+++.+++..
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 35899999999999777 99999999999999999877
No 324
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.83 E-value=0.0026 Score=72.21 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=33.4
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..+++++++.++++..+ ++||+|+|||||++.+++..
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35899999999998776 99999999999999999876
No 325
>PRK14532 adenylate kinase; Provisional
Probab=96.82 E-value=0.0011 Score=63.78 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=25.7
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
++++.||||+||||+|+.||+.++..++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is 30 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLS 30 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 48899999999999999999999876653
No 326
>PRK14530 adenylate kinase; Provisional
Probab=96.82 E-value=0.0013 Score=65.14 Aligned_cols=29 Identities=38% Similarity=0.558 Sum_probs=26.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv 359 (575)
..++|+||||+||||+|+.||+.++.+++
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i 32 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHV 32 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 46899999999999999999999987765
No 327
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.80 E-value=0.00078 Score=72.14 Aligned_cols=38 Identities=34% Similarity=0.677 Sum_probs=34.5
Q ss_pred CCCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 317 ~~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
...+++++++.+.++.++ |.||+||||||+.|+||..-
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999888 99999999999999999765
No 328
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.78 E-value=0.0031 Score=71.50 Aligned_cols=48 Identities=25% Similarity=0.333 Sum_probs=37.7
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhCC--CEEEecccc
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATT 365 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~--~fv~v~~s~ 365 (575)
..++++++++++++..+ ++|++|+|||||++.+++.... --+.+++.+
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~ 404 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRP 404 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEE
Confidence 45899999999988777 9999999999999999987732 124455543
No 329
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.78 E-value=0.0039 Score=62.28 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=26.7
Q ss_pred CCCCCcccccCccEEEEcCCCCChHHHHHHHHH
Q 008176 320 GVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 320 ~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~ 352 (575)
+.+++++.....-++|+||+|+|||++.+.++.
T Consensus 20 v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 20 VPNDTELDPERQILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred EeeeEEecCCceEEEEECCCCCChHHHHHHHHH
Confidence 456667776665677999999999999999974
No 330
>PRK13949 shikimate kinase; Provisional
Probab=96.78 E-value=0.0013 Score=63.21 Aligned_cols=31 Identities=45% Similarity=0.693 Sum_probs=27.9
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEec
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~ 362 (575)
.++|+|+||+||||+++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999998887544
No 331
>PRK13948 shikimate kinase; Provisional
Probab=96.77 E-value=0.0016 Score=63.59 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=30.8
Q ss_pred ccCccEEEEcCCCCChHHHHHHHHHHhCCCEEEec
Q 008176 328 LEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (575)
Q Consensus 328 i~~~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~ 362 (575)
.++.+++|+|.+|+||||+++.+|+.++.+|+..|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 34578999999999999999999999999997554
No 332
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.0043 Score=69.28 Aligned_cols=53 Identities=17% Similarity=0.380 Sum_probs=41.4
Q ss_pred CCCCCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhCCC-EEEecccccc
Q 008176 315 SCTTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP-FVIADATTLT 367 (575)
Q Consensus 315 ~~~~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~~-fv~v~~s~l~ 367 (575)
.+...+|++++++++++.-+ ++|++|+||||+.|+|-+..+.. =+.+|+.++.
T Consensus 362 ~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik 416 (591)
T KOG0057|consen 362 GPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIK 416 (591)
T ss_pred CCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHh
Confidence 34556999999999999766 99999999999999999887421 2446665544
No 333
>PHA02624 large T antigen; Provisional
Probab=96.75 E-value=0.012 Score=66.88 Aligned_cols=128 Identities=22% Similarity=0.176 Sum_probs=71.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~ 410 (575)
.-++|+||||||||+++.+|++.++...+.++++.-...-|+|- +...-+++||++..-.-.
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~FwL~p------------------l~D~~~~l~dD~t~~~~~ 493 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFELGC------------------AIDQFMVVFEDVKGQPAD 493 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHHhhh------------------hhhceEEEeeeccccccc
Confidence 45669999999999999999999976666666443211101111 134558888987654332
Q ss_pred hhhcccCCCcchHHHHHHHHHHhhCC-eecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCC
Q 008176 411 AESLNISRDVSGEGVQQALLKMLEGT-VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFG 488 (575)
Q Consensus 411 r~~~~~~~~~~~e~vq~aLL~~LEg~-~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~ 488 (575)
..+...|.- .. -..-|...|||- .|++ .++| ...+.+.... .|.|+|---+...+.- ||...+.|.
T Consensus 494 ~~~Lp~G~~-~d--Nl~~lRn~LDG~V~v~l----d~KH--~n~~q~~~PP--lliT~Ney~iP~T~~~-Rf~~~~~F~ 560 (647)
T PHA02624 494 NKDLPSGQG-MN--NLDNLRDYLDGSVPVNL----EKKH--LNKRSQIFPP--GIVTMNEYLIPQTVKA-RFAKVLDFK 560 (647)
T ss_pred cccCCcccc-cc--hhhHHHhhcCCCCcccc----chhc--cCchhccCCC--eEEeecCcccchhHHH-HHHHhcccc
Confidence 111111111 10 136688899986 5655 2222 2223333333 3556775556666643 455566654
No 334
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.74 E-value=0.0023 Score=71.53 Aligned_cols=36 Identities=25% Similarity=0.484 Sum_probs=33.0
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.++++..+ ++||+|+|||||++.+++..
T Consensus 336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5899999999999777 99999999999999999876
No 335
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.73 E-value=0.0021 Score=62.47 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=27.6
Q ss_pred CCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 320 ~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
+++++ +.+.++.++ |.||+|+|||||+++++...
T Consensus 15 ~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 15 LLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34443 567777777 99999999999999999876
No 336
>PTZ00243 ABC transporter; Provisional
Probab=96.73 E-value=0.0029 Score=79.71 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=33.7
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
+.+|+++++.++++..+ ++|++|+|||||+++|.+.+
T Consensus 1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~ 1360 (1560)
T PTZ00243 1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV 1360 (1560)
T ss_pred CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45899999999998777 99999999999999999876
No 337
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.72 E-value=0.0015 Score=62.28 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=25.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCEEEecccc
Q 008176 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~ 365 (575)
++++|+||+||||+|+.||+.++... ++..+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d 32 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGD 32 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECCh
Confidence 67999999999999999999997655 44444
No 338
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.70 E-value=0.0043 Score=59.76 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.8
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
..+.++|+||+||||++.-+++.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468899999999999999999776
No 339
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.69 E-value=0.0043 Score=64.23 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=44.9
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhH
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEI 404 (575)
.+|.||+|..|+||+++++..|-..+..++.+..+. +|--.++...++.++..+.. ...+.+++++|-
T Consensus 31 ~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~----~y~~~~f~~dLk~~~~~ag~---~~~~~vfll~d~ 98 (268)
T PF12780_consen 31 RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITK----GYSIKDFKEDLKKALQKAGI---KGKPTVFLLTDS 98 (268)
T ss_dssp TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTST----TTHHHHHHHHHHHHHHHHHC---S-S-EEEEEECC
T ss_pred CCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeC----CcCHHHHHHHHHHHHHHHhc---cCCCeEEEecCc
Confidence 489999999999999999999999998888777542 33333334445555444332 235667777663
No 340
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.68 E-value=0.0046 Score=70.08 Aligned_cols=37 Identities=30% Similarity=0.543 Sum_probs=33.1
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..+++++++.++++..+ ++||+|+|||||++.+++..
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 35799999999998777 99999999999999999776
No 341
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.67 E-value=0.0014 Score=61.78 Aligned_cols=59 Identities=24% Similarity=0.282 Sum_probs=36.0
Q ss_pred ccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC-
Q 008176 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (575)
Q Consensus 279 VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~- 357 (575)
.+|.++..+.+...+. ... ...+..++++|++|+|||++.+.+...+...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~----------------------------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~ 52 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQ----------------------------SGSPRNLLLTGESGSGKTSLLRALLDRLAERG 52 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTS----------------------------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH-HHH----------------------------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4889999998887772 000 0123678899999999999999887666332
Q ss_pred --EEEeccccc
Q 008176 358 --FVIADATTL 366 (575)
Q Consensus 358 --fv~v~~s~l 366 (575)
++.+++...
T Consensus 53 ~~~~~~~~~~~ 63 (185)
T PF13191_consen 53 GYVISINCDDS 63 (185)
T ss_dssp --EEEEEEETT
T ss_pred CEEEEEEEecc
Confidence 666666554
No 342
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.66 E-value=0.0018 Score=58.91 Aligned_cols=30 Identities=40% Similarity=0.719 Sum_probs=26.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCEEEec
Q 008176 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l~~~fv~v~ 362 (575)
+.+.|+|||||||+|+.||+.++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 579999999999999999999999887554
No 343
>PRK14531 adenylate kinase; Provisional
Probab=96.65 E-value=0.002 Score=62.25 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=26.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
..++++||||+||||+++.||+.++.+.+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 468999999999999999999999887653
No 344
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.65 E-value=0.0045 Score=58.84 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=24.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHh---CCCEEEeccc
Q 008176 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s 364 (575)
+|+.||||||||+++..++... +.+.+.++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 6899999999999998876543 5566555543
No 345
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.65 E-value=0.0021 Score=61.75 Aligned_cols=33 Identities=39% Similarity=0.738 Sum_probs=29.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEecc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~ 363 (575)
.+++|+|++|+||||+++.+|+.++.+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 578999999999999999999999988875553
No 346
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.65 E-value=0.0012 Score=70.39 Aligned_cols=35 Identities=29% Similarity=0.602 Sum_probs=32.4
Q ss_pred CCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 320 ~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
+++++++.+..+..+ |.||+||||||+.|+||...
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 789999999999877 99999999999999999765
No 347
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.64 E-value=0.0012 Score=63.76 Aligned_cols=37 Identities=24% Similarity=0.441 Sum_probs=33.3
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34789999999999877 99999999999999999865
No 348
>PRK04296 thymidine kinase; Provisional
Probab=96.64 E-value=0.0061 Score=59.51 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=22.7
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh---CCCEEEe
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v 361 (575)
-.+++||+|+||||++..++..+ +...+.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 45799999999999998887654 4454444
No 349
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.63 E-value=0.0019 Score=61.93 Aligned_cols=28 Identities=46% Similarity=0.762 Sum_probs=25.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 333 ILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
++++|+||+||||+|+.||+.++..++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~ 29 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 7899999999999999999998876643
No 350
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.63 E-value=0.0017 Score=63.00 Aligned_cols=32 Identities=41% Similarity=0.778 Sum_probs=28.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEec
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~ 362 (575)
.+++|+|++|+||||+.++||+.++.+|+..|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 57899999999999999999999999997444
No 351
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.62 E-value=0.0019 Score=59.78 Aligned_cols=27 Identities=44% Similarity=0.840 Sum_probs=23.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCEE
Q 008176 333 ILLMGPTGSGKTLLAKTLARYVNVPFV 359 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l~~~fv 359 (575)
++|.|+||+||||+|+.+++.++..++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 579999999999999999999876554
No 352
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.62 E-value=0.0018 Score=69.67 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=23.6
Q ss_pred cCccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 329 EKSNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 329 ~~~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
.+.++.|+|++|+|||+|+-+....+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp 87 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLP 87 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCC
Confidence 357999999999999999999987763
No 353
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.62 E-value=0.0017 Score=61.02 Aligned_cols=27 Identities=41% Similarity=0.719 Sum_probs=23.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCEE
Q 008176 333 ILLMGPTGSGKTLLAKTLARYVNVPFV 359 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l~~~fv 359 (575)
++|.||+|+||||+|+.+++.++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 468999999999999999999986664
No 354
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.62 E-value=0.0013 Score=65.79 Aligned_cols=37 Identities=22% Similarity=0.603 Sum_probs=33.3
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..+++++++++.++.++ |+||+|+|||||+++|+...
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 35789999999999777 99999999999999999865
No 355
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.62 E-value=0.0011 Score=65.37 Aligned_cols=36 Identities=28% Similarity=0.562 Sum_probs=33.0
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 18 ~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred eEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 4789999999999777 99999999999999999876
No 356
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.59 E-value=0.0063 Score=57.06 Aligned_cols=34 Identities=32% Similarity=0.572 Sum_probs=27.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccc
Q 008176 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l 366 (575)
+++.|+||+||||+|+.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 5799999999999999999988 555666665443
No 357
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.58 E-value=0.0013 Score=64.40 Aligned_cols=36 Identities=31% Similarity=0.633 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 15 ~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999877 99999999999999999875
No 358
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.57 E-value=0.0043 Score=67.95 Aligned_cols=81 Identities=20% Similarity=0.333 Sum_probs=48.8
Q ss_pred CccEEEEcCCCCChHHHHHHHHHH--h--CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHh
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARY--V--NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~--l--~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID 405 (575)
.-|+++.||+|||||++|.+++.. + | -+ ++.. ..+.++-...-. .-....+|+|||+.
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG-~f--~T~a-------------~Lf~~L~~~~lg--~v~~~DlLI~DEvg 270 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG-GT--ITVA-------------KLFYNISTRQIG--LVGRWDVVAFDEVA 270 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC-Cc--CcHH-------------HHHHHHHHHHHh--hhccCCEEEEEcCC
Confidence 369999999999999999998765 2 2 11 1111 111111111000 01345689999999
Q ss_pred hhhHhhhhcccCCCcchHHHHHHHHHHhhCCee
Q 008176 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (575)
Q Consensus 406 ~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v 438 (575)
.+.-.+. ...++.|...|+.+..
T Consensus 271 ylp~~~~----------~~~v~imK~yMesg~f 293 (449)
T TIGR02688 271 TLKFAKP----------KELIGILKNYMESGSF 293 (449)
T ss_pred CCcCCch----------HHHHHHHHHHHHhCce
Confidence 8654422 1277888888984433
No 359
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.56 E-value=0.00077 Score=61.07 Aligned_cols=34 Identities=35% Similarity=0.693 Sum_probs=28.8
Q ss_pred CCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 321 VDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 321 l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
|+++++.+.++.++ ++|++|+|||||.++|+...
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccc
Confidence 35677778777666 99999999999999999876
No 360
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0047 Score=62.53 Aligned_cols=39 Identities=26% Similarity=0.436 Sum_probs=34.6
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhCC
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV 356 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~ 356 (575)
.+.|+++++++..+.+- +.||+|+||||||.+|+..-+.
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y 56 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY 56 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 47899999999999888 9999999999999999865543
No 361
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=96.55 E-value=0.0059 Score=76.71 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=34.5
Q ss_pred CCCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 317 ~~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+.+|+++++.++++..+ ++|++|+|||||+++|.+..
T Consensus 1231 ~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~ 1269 (1490)
T TIGR01271 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL 1269 (1490)
T ss_pred CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 457899999999999777 99999999999999999876
No 362
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.55 E-value=0.0056 Score=58.59 Aligned_cols=38 Identities=37% Similarity=0.526 Sum_probs=31.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ 368 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~ 368 (575)
..++|+|.+|+||||+|++|.+.+ +.+.+.+++..+..
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 356799999999999999999877 77888899887663
No 363
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=96.53 E-value=0.0067 Score=68.45 Aligned_cols=36 Identities=28% Similarity=0.566 Sum_probs=32.5
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.++++..+ ++|++|+|||||++.+++.+
T Consensus 354 ~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4789999999888666 99999999999999999876
No 364
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.53 E-value=0.0015 Score=64.16 Aligned_cols=36 Identities=36% Similarity=0.589 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++++..+
T Consensus 16 ~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5789999999999877 99999999999999999875
No 365
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.52 E-value=0.0023 Score=61.28 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=27.8
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s 364 (575)
.-++|.|+||+||||+|+.+++.++.+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 3577999999999999999999987776655443
No 366
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.52 E-value=0.0029 Score=59.89 Aligned_cols=32 Identities=34% Similarity=0.557 Sum_probs=28.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEec
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~ 362 (575)
.+++|+|.+|+|||++++.+|+.++.+++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35889999999999999999999999987443
No 367
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.52 E-value=0.0015 Score=65.06 Aligned_cols=36 Identities=22% Similarity=0.511 Sum_probs=33.1
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999777 99999999999999999876
No 368
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.51 E-value=0.0076 Score=67.84 Aligned_cols=37 Identities=27% Similarity=0.537 Sum_probs=32.6
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..+++++++.++++..+ ++|++|+|||||++++++..
T Consensus 345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34799999999877666 99999999999999999876
No 369
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.50 E-value=0.0015 Score=65.29 Aligned_cols=36 Identities=28% Similarity=0.619 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4789999999999877 99999999999999999875
No 370
>PRK13946 shikimate kinase; Provisional
Probab=96.50 E-value=0.0026 Score=61.53 Aligned_cols=32 Identities=34% Similarity=0.695 Sum_probs=29.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEec
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~ 362 (575)
..++|+|.+||||||+++.||+.++.+|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 67899999999999999999999999987544
No 371
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.50 E-value=0.0074 Score=58.94 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=32.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ 368 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~ 368 (575)
..++|+|.+|+||||+|.++.+.+ |...+.+|+..+..
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~ 64 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRH 64 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhh
Confidence 356699999999999999999877 78888899988653
No 372
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.49 E-value=0.0064 Score=59.53 Aligned_cols=31 Identities=32% Similarity=0.516 Sum_probs=25.6
Q ss_pred CCCCcccccCc--cEEEEcCCCCChHHHHHHHH
Q 008176 321 VDDDTVELEKS--NILLMGPTGSGKTLLAKTLA 351 (575)
Q Consensus 321 l~~i~v~i~~~--~VLL~GPpGTGKTtLAraLA 351 (575)
+..+++.+.++ .++|+||+|+||||+.+.++
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 34567777776 37799999999999999998
No 373
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.49 E-value=0.0018 Score=64.23 Aligned_cols=36 Identities=33% Similarity=0.638 Sum_probs=33.1
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4789999999999877 99999999999999999886
No 374
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.48 E-value=0.0016 Score=63.51 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++++..+
T Consensus 12 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 12 IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999998777 99999999999999999876
No 375
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.48 E-value=0.0015 Score=64.72 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=31.9
Q ss_pred CCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 320 ~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
+++++++.+.++.++ |.||+|+|||||.++++...
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 578899999999888 99999999999999999765
No 376
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.48 E-value=0.0029 Score=60.24 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=24.4
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEE
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv 359 (575)
-+++.|+||+||||+|+.+++.++...+
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4679999999999999999999876654
No 377
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.47 E-value=0.0063 Score=59.75 Aligned_cols=25 Identities=40% Similarity=0.737 Sum_probs=22.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
+-+++.||+|+||||+++++++.+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5678999999999999999987774
No 378
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.46 E-value=0.0015 Score=64.29 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=33.0
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++++...
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999998877 99999999999999999876
No 379
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.46 E-value=0.0069 Score=60.08 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=27.7
Q ss_pred CCCCCCcccccCcc-EEEEcCCCCChHHHHHHHHHH
Q 008176 319 DGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 319 ~~l~~i~v~i~~~~-VLL~GPpGTGKTtLAraLA~~ 353 (575)
.+.+++++....+. ++|+||+|+|||++.+.++..
T Consensus 17 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 17 FIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred EEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45677788777644 459999999999999999743
No 380
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.46 E-value=0.0015 Score=65.30 Aligned_cols=36 Identities=25% Similarity=0.580 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |+||+|+|||||+++|+..+
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999877 99999999999999999876
No 381
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.45 E-value=0.0014 Score=64.13 Aligned_cols=36 Identities=33% Similarity=0.637 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |+||+|+|||||+++|+...
T Consensus 14 ~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4788999999999877 99999999999999999865
No 382
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.45 E-value=0.0018 Score=63.41 Aligned_cols=36 Identities=22% Similarity=0.492 Sum_probs=32.5
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..++++++++.++.++ |.||+|+|||||.++++...
T Consensus 14 ~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999988777 99999999999999999875
No 383
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.45 E-value=0.0018 Score=63.57 Aligned_cols=36 Identities=36% Similarity=0.634 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999998877 99999999999999999875
No 384
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.45 E-value=0.0016 Score=63.76 Aligned_cols=36 Identities=25% Similarity=0.518 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++++..+
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999877 99999999999999999876
No 385
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.44 E-value=0.016 Score=66.06 Aligned_cols=36 Identities=28% Similarity=0.432 Sum_probs=29.8
Q ss_pred CCCCCCcccccCc-cEEEEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~-~VLL~GPpGTGKTtLAraLA~~l 354 (575)
.-+++.++.++++ .+++.||+|||||+|.|+||+..
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 5567778887777 45599999999999999999765
No 386
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.44 E-value=0.0016 Score=62.53 Aligned_cols=36 Identities=33% Similarity=0.634 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.||+|+|||||+++++..+
T Consensus 14 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999888 99999999999999999765
No 387
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.43 E-value=0.0018 Score=63.53 Aligned_cols=36 Identities=28% Similarity=0.577 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.||+|+|||||+++++..+
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999777 99999999999999999875
No 388
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.42 E-value=0.0018 Score=63.85 Aligned_cols=36 Identities=36% Similarity=0.526 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++++...
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999776 99999999999999999875
No 389
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.42 E-value=0.0017 Score=63.39 Aligned_cols=36 Identities=42% Similarity=0.616 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.||+|+|||||.++++...
T Consensus 14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999998777 99999999999999999875
No 390
>PRK06762 hypothetical protein; Provisional
Probab=96.42 E-value=0.0032 Score=59.26 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=29.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEecccccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~ 367 (575)
.-++|.|+||+||||+|+.+++.++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 3567999999999999999999986556666654443
No 391
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=96.41 E-value=0.14 Score=56.24 Aligned_cols=105 Identities=19% Similarity=0.250 Sum_probs=62.1
Q ss_pred ccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHH
Q 008176 395 QQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEK 474 (575)
Q Consensus 395 ~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~ 474 (575)
.+-+|+|||++.+-.- ..+.+++...+.|+++++... .-...++.++.++.+.
T Consensus 239 ~GLlI~lDE~e~l~kl------~~~~~R~~~ye~lr~lidd~~-----------------~G~~~gL~~~~~gTPe---- 291 (416)
T PF10923_consen 239 KGLLILLDELENLYKL------RNDQAREKNYEALRQLIDDID-----------------QGRAPGLYFVFAGTPE---- 291 (416)
T ss_pred CceEEEEechHHHHhc------CChHHHHHHHHHHHHHHHHHh-----------------cCCCCceEEEEeeCHH----
Confidence 4568899999998654 344556668899999998310 0124556777777632
Q ss_pred HHHhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHh
Q 008176 475 TISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLT 550 (575)
Q Consensus 475 ~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~ 550 (575)
.+.+. +.+-.+.++..+.+..... -.+++.+.....+.+.+|+.+++.+++.
T Consensus 292 f~eD~----------------rrGv~sY~AL~~RL~~~~~--------~~~~~~n~~~pvIrL~~l~~eel~~l~~ 343 (416)
T PF10923_consen 292 FFEDG----------------RRGVYSYEALAQRLAEEFF--------ADDGFDNLRAPVIRLQPLTPEELLELLE 343 (416)
T ss_pred HhhCc----------------cccccccHHHHHHHhcccc--------ccccccCccCceecCCCCCHHHHHHHHH
Confidence 22110 0011122222333332221 1367777778889999999999987765
No 392
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.41 E-value=0.0017 Score=63.83 Aligned_cols=36 Identities=28% Similarity=0.575 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |+||+|+|||||+++|+...
T Consensus 13 ~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4789999999999777 99999999999999999875
No 393
>PRK14974 cell division protein FtsY; Provisional
Probab=96.39 E-value=0.021 Score=60.97 Aligned_cols=34 Identities=35% Similarity=0.524 Sum_probs=25.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s 364 (575)
.-++|+|+||+||||++..+|..+ +..+..+++.
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 456799999999999998888765 4455445544
No 394
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.38 E-value=0.0028 Score=63.66 Aligned_cols=38 Identities=29% Similarity=0.598 Sum_probs=34.1
Q ss_pred CCCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 317 ~~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
...+|++|++.+++..|- |+||+||||||+.|++-+..
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 567899999999998888 99999999999999998655
No 395
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.38 E-value=0.05 Score=58.80 Aligned_cols=63 Identities=25% Similarity=0.282 Sum_probs=49.7
Q ss_pred hhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
.+...|.+.+.+++.|..++.+. +- .-+.++.|+|-.|||||.+.+.+-+.
T Consensus 3 ~l~~~v~~Re~qi~~L~~Llg~~----------------------------~~-~~PS~~~iyG~sgTGKT~~~r~~l~~ 53 (438)
T KOG2543|consen 3 VLEPNVPCRESQIRRLKSLLGNN----------------------------SC-TIPSIVHIYGHSGTGKTYLVRQLLRK 53 (438)
T ss_pred ccccCccchHHHHHHHHHHhCCC----------------------------Cc-ccceeEEEeccCCCchhHHHHHHHhh
Confidence 34556889999999999888300 00 12367899999999999999999999
Q ss_pred hCCCEEEecccc
Q 008176 354 VNVPFVIADATT 365 (575)
Q Consensus 354 l~~~fv~v~~s~ 365 (575)
++.+.+.+++-+
T Consensus 54 ~n~~~vw~n~~e 65 (438)
T KOG2543|consen 54 LNLENVWLNCVE 65 (438)
T ss_pred cCCcceeeehHH
Confidence 999998888876
No 396
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.38 E-value=0.0018 Score=64.01 Aligned_cols=36 Identities=28% Similarity=0.605 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999777 99999999999999999875
No 397
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.37 E-value=0.0024 Score=60.91 Aligned_cols=36 Identities=31% Similarity=0.535 Sum_probs=33.0
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||.++++...
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4789999999999888 99999999999999999876
No 398
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.37 E-value=0.027 Score=58.51 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=22.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
-.+.|.|+=|+|||++.+.+-+.+...
T Consensus 21 ~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 21 FVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 455699999999999999998777433
No 399
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=96.37 E-value=0.0074 Score=68.67 Aligned_cols=36 Identities=39% Similarity=0.594 Sum_probs=32.3
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.++++..+ ++||+|+|||||++.+++..
T Consensus 349 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 385 (585)
T TIGR01192 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY 385 (585)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC
Confidence 4789999999888777 99999999999999999776
No 400
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.37 E-value=0.0019 Score=63.26 Aligned_cols=36 Identities=33% Similarity=0.506 Sum_probs=31.7
Q ss_pred CCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.+.|.||+|+|||||+++++..+
T Consensus 14 ~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 14 RALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred EEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999998855599999999999999999865
No 401
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.36 E-value=0.0022 Score=63.86 Aligned_cols=36 Identities=25% Similarity=0.478 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |+||+|+|||||+++|+...
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4789999999999877 99999999999999999865
No 402
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.36 E-value=0.0019 Score=64.32 Aligned_cols=36 Identities=31% Similarity=0.589 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.||+|+|||||+++++..+
T Consensus 14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 4789999999999777 99999999999999999875
No 403
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.36 E-value=0.0022 Score=63.78 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999877 99999999999999999865
No 404
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.35 E-value=0.0023 Score=64.52 Aligned_cols=36 Identities=36% Similarity=0.683 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4789999999998777 99999999999999999875
No 405
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.35 E-value=0.029 Score=62.00 Aligned_cols=37 Identities=41% Similarity=0.562 Sum_probs=29.1
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccc
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l 366 (575)
+..++|+|++|+||||++..+|..+ +..+..+++..+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 4677899999999999999999776 455666666544
No 406
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.35 E-value=0.0038 Score=63.12 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=26.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
..++|.||||+||||+|+.||+.++.+++.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is 36 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHIN 36 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 458999999999999999999999887753
No 407
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.002 Score=64.56 Aligned_cols=36 Identities=33% Similarity=0.639 Sum_probs=33.0
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 16 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999888 99999999999999999875
No 408
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.35 E-value=0.002 Score=64.03 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999998777 99999999999999999876
No 409
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.35 E-value=0.0022 Score=63.38 Aligned_cols=36 Identities=33% Similarity=0.622 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||.++|+...
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999766 99999999999999999875
No 410
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.35 E-value=0.002 Score=63.61 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=33.0
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999888 99999999999999999875
No 411
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.34 E-value=0.0019 Score=63.73 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.||+|+|||||+++++...
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999777 99999999999999999775
No 412
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.33 E-value=0.003 Score=55.86 Aligned_cols=22 Identities=50% Similarity=0.607 Sum_probs=20.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q 008176 333 ILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l 354 (575)
|+|.|+|||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999986
No 413
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.33 E-value=0.0026 Score=61.75 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=30.5
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHH
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~ 352 (575)
.+++++++++.++.++ |.||+|+|||||.+++..
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4688999999999887 999999999999999963
No 414
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.32 E-value=0.0071 Score=63.88 Aligned_cols=35 Identities=40% Similarity=0.811 Sum_probs=30.9
Q ss_pred CCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 320 ~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.++++++.++.+.++ +.|-+|+|||||+|++-+..
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi 78 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI 78 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC
Confidence 357788999999888 99999999999999998766
No 415
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.31 E-value=0.011 Score=58.44 Aligned_cols=98 Identities=22% Similarity=0.319 Sum_probs=57.0
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhh
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r 411 (575)
.++|.|+-|+|||+..+.|+... + .+. +.. .-. ...... ....-|+.|||++.+...
T Consensus 54 ~lvl~G~QG~GKStf~~~L~~~~----~-~d~--~~~--~~~---kd~~~~----------l~~~~iveldEl~~~~k~- 110 (198)
T PF05272_consen 54 VLVLVGKQGIGKSTFFRKLGPEY----F-SDS--IND--FDD---KDFLEQ----------LQGKWIVELDELDGLSKK- 110 (198)
T ss_pred eeeEecCCcccHHHHHHHHhHHh----c-cCc--ccc--CCC---cHHHHH----------HHHhHheeHHHHhhcchh-
Confidence 45599999999999999997652 1 111 110 000 111111 123458999999998754
Q ss_pred hhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC
Q 008176 412 ESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (575)
Q Consensus 412 ~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d 471 (575)
-++.|-.++-.....+ +.+.+....-...+.+||+|+|..+
T Consensus 111 -------------~~~~lK~~iT~~~~~~------R~pY~~~~~~~~R~~~figTtN~~~ 151 (198)
T PF05272_consen 111 -------------DVEALKSFITRRTDTY------RPPYGRDPEEFPRRAVFIGTTNDDD 151 (198)
T ss_pred -------------hHHHHHHHhcccceee------ecCCcCcceeeceeEEEEeccCCcc
Confidence 3566666666433332 2233333344456678899998644
No 416
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.31 E-value=0.0023 Score=61.25 Aligned_cols=36 Identities=28% Similarity=0.483 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ +.||+|+|||||+++++...
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4789999999998777 99999999999999999876
No 417
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.31 E-value=0.002 Score=64.24 Aligned_cols=36 Identities=22% Similarity=0.454 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred eeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999777 99999999999999999875
No 418
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.31 E-value=0.0025 Score=64.16 Aligned_cols=36 Identities=25% Similarity=0.495 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999877 99999999999999999875
No 419
>PRK02496 adk adenylate kinase; Provisional
Probab=96.30 E-value=0.0039 Score=59.86 Aligned_cols=28 Identities=32% Similarity=0.720 Sum_probs=25.2
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEE
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv 359 (575)
.+++.||||+||||+|+.||+.++.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i 30 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHI 30 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4789999999999999999999987765
No 420
>PRK14528 adenylate kinase; Provisional
Probab=96.30 E-value=0.0042 Score=60.43 Aligned_cols=29 Identities=41% Similarity=0.746 Sum_probs=26.0
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
.+++.||||+||||+|+.+++.++.+.+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 58899999999999999999999887653
No 421
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.29 E-value=0.0025 Score=63.62 Aligned_cols=36 Identities=19% Similarity=0.415 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 4789999999998777 99999999999999999876
No 422
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.29 E-value=0.0026 Score=62.66 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 18 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4789999999999877 99999999999999999875
No 423
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.29 E-value=0.0062 Score=64.03 Aligned_cols=32 Identities=41% Similarity=0.664 Sum_probs=28.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEec
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~ 362 (575)
..++|+|.+|||||++++.+|+.++.+++..+
T Consensus 134 ~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 134 RRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 57889999999999999999999999998544
No 424
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.29 E-value=0.0023 Score=63.47 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=32.4
Q ss_pred CCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 320 ~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 789999999998887 99999999999999999876
No 425
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=96.29 E-value=0.0021 Score=68.11 Aligned_cols=37 Identities=19% Similarity=0.481 Sum_probs=34.2
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++++.++.++ |+|++|+|||||+++|++.+.
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4799999999999988 999999999999999998763
No 426
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.29 E-value=0.0024 Score=63.06 Aligned_cols=36 Identities=31% Similarity=0.599 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999988877 99999999999999999865
No 427
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.28 E-value=0.0026 Score=57.16 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=27.8
Q ss_pred CCCCCCcccccCcc-EEEEcCCCCChHHHHHHHH
Q 008176 319 DGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLA 351 (575)
Q Consensus 319 ~~l~~i~v~i~~~~-VLL~GPpGTGKTtLAraLA 351 (575)
.+++++++.+.++. ++|.||+|+|||||++++.
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 35778888888755 5599999999999999987
No 428
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.28 E-value=0.0028 Score=63.24 Aligned_cols=35 Identities=31% Similarity=0.575 Sum_probs=30.7
Q ss_pred CCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 321 VDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 321 l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
++++++.+.++.++ |.||+|+|||||+++|+....
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 57788888888777 999999999999999998763
No 429
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.0026 Score=63.24 Aligned_cols=36 Identities=28% Similarity=0.596 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.||+|+|||||+++++...
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4789999999999777 99999999999999999876
No 430
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.27 E-value=0.0029 Score=63.23 Aligned_cols=36 Identities=36% Similarity=0.566 Sum_probs=32.4
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999777 99999999999999999873
No 431
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.27 E-value=0.0039 Score=60.00 Aligned_cols=37 Identities=14% Similarity=0.301 Sum_probs=31.6
Q ss_pred hcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHHH
Q 008176 520 AYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNAL 556 (575)
Q Consensus 520 ~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L 556 (575)
-||+....++-++.++.-...+.++...|+..+...+
T Consensus 137 ~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid~~ 173 (179)
T COG1102 137 IYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDAL 173 (179)
T ss_pred HhCCCCccceeeEEEEecccCCHHHHHHHHHHHHHhh
Confidence 4678888889999999999999999999998766655
No 432
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.031 Score=60.64 Aligned_cols=24 Identities=46% Similarity=0.592 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
+.++|+||+|+||||++..||..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 456699999999999999998653
No 433
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=96.26 E-value=0.0057 Score=72.45 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=49.1
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccccccccchhh------hHHHHHhhh--chhhHHhhccCeEeehh
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVE------SILYKLLTV--SDYNVAAAQQGIVYIDE 403 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~------~~l~~lf~~--a~~~l~~~~~~ILfIDE 403 (575)
.++++||||+|||+.|.++|..++..+++.+.++.. +++...... ..+...+.. ++... .....||++||
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~R-Sk~~l~~~~~~~~~s~si~~~~~~~~~~~~~-~~~~~vil~de 436 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVR-SKKELLNKLGNATSSHSIKGSKKKKGNRQSL-NSDHFLILMDE 436 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccc-cccHHHhhhhccccccchhhhhccccccccc-ccceeEEEEec
Confidence 368999999999999999999999999999998766 332222100 111111100 00000 12234999999
Q ss_pred HhhhhH
Q 008176 404 VDKITK 409 (575)
Q Consensus 404 ID~l~~ 409 (575)
+|.+..
T Consensus 437 vD~~~~ 442 (871)
T KOG1968|consen 437 VDGMFG 442 (871)
T ss_pred cccccc
Confidence 999876
No 434
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.26 E-value=0.0023 Score=64.02 Aligned_cols=36 Identities=31% Similarity=0.589 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 15 RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4789999999999888 99999999999999999765
No 435
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.26 E-value=0.0024 Score=64.05 Aligned_cols=36 Identities=31% Similarity=0.513 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999998776 99999999999999999875
No 436
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.24 E-value=0.0031 Score=62.66 Aligned_cols=38 Identities=26% Similarity=0.536 Sum_probs=33.9
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
..+++++++++.++.++ |+||+|+|||||+++++..+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 46889999999998777 999999999999999998763
No 437
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.23 E-value=0.0028 Score=64.03 Aligned_cols=36 Identities=28% Similarity=0.630 Sum_probs=33.0
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++++..+
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4789999999999888 99999999999999999875
No 438
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.23 E-value=0.0031 Score=63.80 Aligned_cols=37 Identities=30% Similarity=0.622 Sum_probs=33.4
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++.+.++.++ |.||+|+|||||+++++..+.
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4789999999999888 999999999999999998763
No 439
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.23 E-value=0.0029 Score=63.86 Aligned_cols=36 Identities=22% Similarity=0.613 Sum_probs=33.0
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.|++|+|||||+++|+..+
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 18 HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4789999999999877 99999999999999999875
No 440
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.23 E-value=0.0031 Score=62.22 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=33.0
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4789999999999877 99999999999999999865
No 441
>PRK10908 cell division protein FtsE; Provisional
Probab=96.22 E-value=0.0025 Score=63.09 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999887 99999999999999999875
No 442
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.22 E-value=0.003 Score=62.67 Aligned_cols=36 Identities=31% Similarity=0.560 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||.++|+..+
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4789999999998766 99999999999999999876
No 443
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.22 E-value=0.0027 Score=62.18 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 15 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999777 99999999999999999876
No 444
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.21 E-value=0.003 Score=61.72 Aligned_cols=36 Identities=31% Similarity=0.509 Sum_probs=33.2
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ +.||+|+|||||+++++...
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 4789999999999887 99999999999999999876
No 445
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.21 E-value=0.0027 Score=62.49 Aligned_cols=36 Identities=31% Similarity=0.563 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.|++|+|||||+++|+...
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4789999999988766 99999999999999999875
No 446
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.21 E-value=0.0025 Score=64.87 Aligned_cols=36 Identities=36% Similarity=0.706 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |+||+|+|||||+++|+...
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999998777 99999999999999999875
No 447
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.21 E-value=0.0033 Score=60.01 Aligned_cols=36 Identities=28% Similarity=0.537 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||.++|+...
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4789999999988777 99999999999999999876
No 448
>PF13245 AAA_19: Part of AAA domain
Probab=96.21 E-value=0.0078 Score=50.57 Aligned_cols=24 Identities=38% Similarity=0.661 Sum_probs=18.2
Q ss_pred ccEEEEcCCCCChH-HHHHHHHHHh
Q 008176 331 SNILLMGPTGSGKT-LLAKTLARYV 354 (575)
Q Consensus 331 ~~VLL~GPpGTGKT-tLAraLA~~l 354 (575)
+-+++.|||||||| ++++.++...
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34557999999999 6666776665
No 449
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.21 E-value=0.0033 Score=63.41 Aligned_cols=36 Identities=31% Similarity=0.647 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4789999999999777 99999999999999999864
No 450
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.20 E-value=0.0031 Score=60.06 Aligned_cols=36 Identities=31% Similarity=0.478 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..++++++.+.++.++ +.||+|+|||||+++++..+
T Consensus 15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999777 99999999999999999876
No 451
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.0026 Score=60.71 Aligned_cols=36 Identities=39% Similarity=0.680 Sum_probs=32.5
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.||+|+|||||+++++...
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3789999999998777 99999999999999999865
No 452
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.20 E-value=0.0025 Score=64.37 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999887 99999999999999999875
No 453
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.20 E-value=0.003 Score=64.27 Aligned_cols=36 Identities=25% Similarity=0.612 Sum_probs=33.0
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4789999999999887 99999999999999999875
No 454
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.19 E-value=0.0084 Score=63.65 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=29.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEecccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~ 365 (575)
..++|+|++|+|||||++.|++.++.+++.--+.+
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~ 197 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYARE 197 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHH
Confidence 46889999999999999999999998886555444
No 455
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.19 E-value=0.0037 Score=62.97 Aligned_cols=37 Identities=24% Similarity=0.528 Sum_probs=33.3
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+....
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4789999999999777 999999999999999998753
No 456
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.18 E-value=0.003 Score=63.04 Aligned_cols=36 Identities=25% Similarity=0.547 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4789999999998777 99999999999999999876
No 457
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.18 E-value=0.0028 Score=61.02 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=31.6
Q ss_pred CCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 320 ~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
+++++++.+.++.++ |.||+|+|||||+++++...
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999988776 99999999999999999876
No 458
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.18 E-value=0.0028 Score=63.51 Aligned_cols=36 Identities=19% Similarity=0.577 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999777 99999999999999999875
No 459
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.18 E-value=0.0028 Score=62.03 Aligned_cols=36 Identities=31% Similarity=0.570 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++++...
T Consensus 14 ~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4789999999998777 99999999999999999865
No 460
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.17 E-value=0.0029 Score=62.60 Aligned_cols=36 Identities=25% Similarity=0.439 Sum_probs=33.0
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999877 99999999999999999876
No 461
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.16 E-value=0.0052 Score=59.84 Aligned_cols=27 Identities=48% Similarity=0.914 Sum_probs=23.6
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCE
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPF 358 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~f 358 (575)
.+++.||||+||||+|+.||+.++.+-
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~h 28 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPH 28 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 478999999999999999999965544
No 462
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.16 E-value=0.011 Score=57.20 Aligned_cols=19 Identities=21% Similarity=0.588 Sum_probs=17.9
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 008176 333 ILLMGPTGSGKTLLAKTLA 351 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA 351 (575)
++|+||+|+|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 5799999999999999998
No 463
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.16 E-value=0.0034 Score=63.74 Aligned_cols=37 Identities=22% Similarity=0.549 Sum_probs=33.1
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+..+.
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4789999999988777 999999999999999998763
No 464
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.0029 Score=63.57 Aligned_cols=36 Identities=39% Similarity=0.703 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 15 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999888 99999999999999999865
No 465
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.15 E-value=0.0032 Score=63.37 Aligned_cols=36 Identities=28% Similarity=0.646 Sum_probs=33.0
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.|++|+|||||+++|+...
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4789999999999888 99999999999999999876
No 466
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.14 E-value=0.0051 Score=60.61 Aligned_cols=28 Identities=39% Similarity=0.704 Sum_probs=25.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 333 ILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
++++||||+||||+|+.||+.++.+.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999998877653
No 467
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.14 E-value=0.0039 Score=63.00 Aligned_cols=48 Identities=25% Similarity=0.465 Sum_probs=38.0
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhCC--CEEEecccc
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATT 365 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~--~fv~v~~s~ 365 (575)
-.+++++++.+.++.++ ++||+|||||||...++..... -.+.+++.+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d 68 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEE
Confidence 46899999999999888 9999999999999999876522 234455544
No 468
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.14 E-value=0.003 Score=62.03 Aligned_cols=36 Identities=33% Similarity=0.437 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++++...
T Consensus 16 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999777 99999999999999999875
No 469
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.14 E-value=0.0034 Score=61.94 Aligned_cols=37 Identities=14% Similarity=0.312 Sum_probs=33.2
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 35789999999988777 99999999999999999876
No 470
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.13 E-value=0.0031 Score=61.58 Aligned_cols=36 Identities=31% Similarity=0.435 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.||+|+||||++++|+...
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999998777 99999999999999999875
No 471
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.13 E-value=0.013 Score=63.42 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.8
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
...+++||+|||||+|++.+++.+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 467999999999999999998876
No 472
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.13 E-value=0.0032 Score=64.59 Aligned_cols=36 Identities=33% Similarity=0.606 Sum_probs=33.5
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
++++++++++.++.++ ++||+|+|||||.|++...+
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4899999999999998 99999999999999999765
No 473
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.13 E-value=0.012 Score=59.54 Aligned_cols=34 Identities=32% Similarity=0.585 Sum_probs=26.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccc
Q 008176 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l 366 (575)
++|+|+||+||||+|+.+++.+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6799999999999999999887 455555554333
No 474
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.12 E-value=0.003 Score=61.48 Aligned_cols=36 Identities=31% Similarity=0.425 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++++...
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999877 99999999999999999875
No 475
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.12 E-value=0.0029 Score=65.99 Aligned_cols=36 Identities=25% Similarity=0.577 Sum_probs=33.0
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999887 99999999999999999876
No 476
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.11 E-value=0.012 Score=57.42 Aligned_cols=34 Identities=32% Similarity=0.380 Sum_probs=26.3
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh---CCCEEEecccc
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~ 365 (575)
-++++||||+|||+++..++... +...+.++..+
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 44599999999999999887543 55677777754
No 477
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.11 E-value=0.0042 Score=60.78 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ +.||+|+|||||+++|+...
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4789999999998777 99999999999999999875
No 478
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.11 E-value=0.06 Score=59.37 Aligned_cols=36 Identities=33% Similarity=0.432 Sum_probs=28.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l 366 (575)
.-++|+|++|+||||++..||..+ |..+..+++...
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 456799999999999999998766 566666666543
No 479
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.10 E-value=0.0037 Score=62.53 Aligned_cols=34 Identities=18% Similarity=0.474 Sum_probs=29.5
Q ss_pred CCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 321 VDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 321 l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
++++++++.++.++ |+||+|+|||||+++++...
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35678888888777 99999999999999999776
No 480
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.10 E-value=0.0037 Score=60.76 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=31.8
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHH
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~ 353 (575)
.+++++++.+.++.++ |.||+|+|||||+++++..
T Consensus 21 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999998777 9999999999999999974
No 481
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.10 E-value=0.0035 Score=62.44 Aligned_cols=36 Identities=25% Similarity=0.526 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 15 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4789999999998777 99999999999999999876
No 482
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.10 E-value=0.004 Score=61.73 Aligned_cols=36 Identities=28% Similarity=0.503 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++++...
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4789999999999777 99999999999999999876
No 483
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.10 E-value=0.0034 Score=63.21 Aligned_cols=36 Identities=33% Similarity=0.615 Sum_probs=32.4
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 17 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 17 KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4789999999998777 99999999999999999765
No 484
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.10 E-value=0.0039 Score=63.67 Aligned_cols=37 Identities=30% Similarity=0.651 Sum_probs=33.2
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..+++++++.+.++.++ |.|++|+|||||+++|+...
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 35789999999999877 99999999999999999864
No 485
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.10 E-value=0.0033 Score=60.41 Aligned_cols=36 Identities=39% Similarity=0.687 Sum_probs=32.5
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++++...
T Consensus 13 ~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999998777 99999999999999999876
No 486
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.09 E-value=0.0032 Score=63.28 Aligned_cols=36 Identities=33% Similarity=0.642 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999998777 99999999999999999875
No 487
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.09 E-value=0.0031 Score=63.24 Aligned_cols=36 Identities=31% Similarity=0.509 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 17 ~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999998887 99999999999999999875
No 488
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.09 E-value=0.0032 Score=61.77 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=33.9
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
..+++++++.+.++.++ |.||+|+|||||+++|+....
T Consensus 20 ~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred ceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 35789999999999777 999999999999999998753
No 489
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.08 E-value=0.0061 Score=60.29 Aligned_cols=29 Identities=34% Similarity=0.674 Sum_probs=25.7
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
.++++|+||+||||+|+.||+.++.+.+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 37899999999999999999999876653
No 490
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.08 E-value=0.0032 Score=65.14 Aligned_cols=36 Identities=19% Similarity=0.513 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999777 99999999999999999776
No 491
>PRK06547 hypothetical protein; Provisional
Probab=96.08 E-value=0.006 Score=58.97 Aligned_cols=30 Identities=40% Similarity=0.512 Sum_probs=25.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
..|++.|++|+||||+|+.+++.++.+++.
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~ 45 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAARTGFQLVH 45 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeec
Confidence 456688999999999999999998877653
No 492
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.08 E-value=0.0038 Score=62.90 Aligned_cols=36 Identities=28% Similarity=0.624 Sum_probs=32.6
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4789999999999777 99999999999999999864
No 493
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.08 E-value=0.0033 Score=64.32 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=32.5
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999998777 99999999999999999875
No 494
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.07 E-value=0.0031 Score=59.80 Aligned_cols=36 Identities=25% Similarity=0.516 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||.++++...
T Consensus 14 ~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4788999999999777 99999999999999999876
No 495
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.07 E-value=0.0035 Score=64.15 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999877 99999999999999999875
No 496
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.07 E-value=0.0033 Score=63.42 Aligned_cols=36 Identities=33% Similarity=0.551 Sum_probs=32.4
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++++...
T Consensus 17 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 17 KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4688999999988776 99999999999999999876
No 497
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.07 E-value=0.0033 Score=64.66 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999777 99999999999999999765
No 498
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.07 E-value=0.003 Score=62.92 Aligned_cols=37 Identities=27% Similarity=0.418 Sum_probs=33.2
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..+++++++.+.++.++ |.||+|+|||||+++++...
T Consensus 35 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35789999999998777 99999999999999999865
No 499
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.07 E-value=0.0037 Score=63.46 Aligned_cols=36 Identities=31% Similarity=0.641 Sum_probs=32.8
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |.||+|+|||||++.|+...
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 4789999999998777 99999999999999999876
No 500
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=96.06 E-value=0.0038 Score=63.86 Aligned_cols=36 Identities=33% Similarity=0.645 Sum_probs=33.0
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 34 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 34 EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4789999999999877 99999999999999999876
Done!