Query 008176
Match_columns 575
No_of_seqs 359 out of 3289
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 19:57:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008176.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008176hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hws_A ATP-dependent CLP prote 100.0 3.4E-32 1.1E-36 284.6 18.5 288 264-574 2-290 (363)
2 1um8_A ATP-dependent CLP prote 100.0 8.6E-30 2.9E-34 267.3 21.0 293 263-574 7-307 (376)
3 1g41_A Heat shock protein HSLU 100.0 1.3E-27 4.3E-32 258.4 18.6 233 265-574 3-370 (444)
4 4b4t_J 26S protease regulatory 99.9 1E-23 3.6E-28 225.1 14.1 174 274-494 146-323 (405)
5 4b4t_I 26S protease regulatory 99.9 7.7E-23 2.6E-27 219.6 12.4 216 274-553 180-400 (437)
6 4b4t_H 26S protease regulatory 99.9 2.3E-22 7.8E-27 217.7 15.2 174 274-494 207-384 (467)
7 4b4t_L 26S protease subunit RP 99.9 1.5E-22 5.1E-27 218.5 12.6 174 274-494 179-356 (437)
8 4b4t_K 26S protease regulatory 99.9 4.5E-22 1.5E-26 214.3 15.2 216 274-553 170-391 (428)
9 4b4t_M 26S protease regulatory 99.9 3E-22 1E-26 215.9 12.8 217 274-554 179-400 (434)
10 1ofh_A ATP-dependent HSL prote 99.9 4.5E-21 1.5E-25 192.9 18.9 232 266-574 4-236 (310)
11 3cf2_A TER ATPase, transitiona 99.8 9.9E-21 3.4E-25 217.3 10.3 221 278-559 478-701 (806)
12 1r6b_X CLPA protein; AAA+, N-t 99.8 8.6E-19 3E-23 199.9 18.6 224 268-574 449-683 (758)
13 4fcw_A Chaperone protein CLPB; 99.8 3.6E-18 1.2E-22 172.6 19.1 225 268-574 8-246 (311)
14 3cf2_A TER ATPase, transitiona 99.8 2.3E-19 7.8E-24 206.1 11.4 220 278-561 205-427 (806)
15 1xwi_A SKD1 protein; VPS4B, AA 99.7 1.3E-17 4.4E-22 172.6 16.1 217 278-559 13-233 (322)
16 3eie_A Vacuolar protein sortin 99.7 8.3E-18 2.8E-22 173.2 14.0 171 275-494 17-188 (322)
17 3pxi_A Negative regulator of g 99.7 1.4E-17 4.8E-22 190.3 16.6 208 268-574 482-692 (758)
18 3cf0_A Transitional endoplasmi 99.7 2.9E-17 9.9E-22 167.8 16.0 215 278-555 16-235 (301)
19 3syl_A Protein CBBX; photosynt 99.7 9.1E-17 3.1E-21 162.4 16.7 138 266-435 20-165 (309)
20 1qvr_A CLPB protein; coiled co 99.7 1.2E-16 4.2E-21 185.0 16.7 222 271-574 552-787 (854)
21 2qp9_X Vacuolar protein sortin 99.7 9E-17 3.1E-21 168.3 14.1 170 274-494 49-221 (355)
22 2ce7_A Cell division protein F 99.7 8.6E-17 3E-21 175.4 13.3 172 278-494 17-190 (476)
23 2x8a_A Nuclear valosin-contain 99.7 1.1E-16 3.7E-21 162.2 11.5 225 274-558 8-235 (274)
24 1lv7_A FTSH; alpha/beta domain 99.7 1.2E-15 4.2E-20 151.0 18.3 174 275-494 11-186 (257)
25 2dhr_A FTSH; AAA+ protein, hex 99.7 5.7E-16 1.9E-20 169.9 16.6 172 278-494 32-205 (499)
26 3h4m_A Proteasome-activating n 99.7 6.5E-16 2.2E-20 154.6 15.7 168 278-494 18-192 (285)
27 3d8b_A Fidgetin-like protein 1 99.7 5.7E-16 2E-20 162.1 14.3 170 278-494 85-255 (357)
28 3vfd_A Spastin; ATPase, microt 99.7 9.4E-16 3.2E-20 161.8 15.5 170 278-494 116-286 (389)
29 2zan_A Vacuolar protein sortin 99.7 2.8E-16 9.4E-21 169.5 11.7 217 278-559 135-355 (444)
30 3b9p_A CG5977-PA, isoform A; A 99.6 6.2E-16 2.1E-20 155.9 13.3 169 278-494 22-193 (297)
31 2qz4_A Paraplegin; AAA+, SPG7, 99.6 2E-15 6.8E-20 148.5 15.9 172 278-494 7-181 (262)
32 3m6a_A ATP-dependent protease 99.6 3.1E-16 1.1E-20 173.4 10.6 157 267-471 71-235 (543)
33 3hu3_A Transitional endoplasmi 99.6 1.7E-15 5.9E-20 165.7 14.7 168 278-494 205-376 (489)
34 3t15_A Ribulose bisphosphate c 99.6 4.2E-16 1.4E-20 159.1 7.9 148 330-488 36-185 (293)
35 3pfi_A Holliday junction ATP-d 99.6 2.6E-14 9E-19 146.5 17.6 157 278-493 30-187 (338)
36 1ypw_A Transitional endoplasmi 99.6 2.3E-16 8E-21 181.9 1.5 173 278-494 478-652 (806)
37 2r62_A Cell division protease 99.6 1.2E-15 4.1E-20 151.6 4.1 172 278-494 12-187 (268)
38 1iy2_A ATP-dependent metallopr 99.5 1.9E-14 6.6E-19 144.6 12.0 175 274-494 38-214 (278)
39 1ixz_A ATP-dependent metallopr 99.5 4E-14 1.4E-18 139.9 13.6 172 278-494 17-190 (254)
40 2r44_A Uncharacterized protein 99.5 1.8E-14 6E-19 147.8 11.2 141 269-470 19-160 (331)
41 2bjv_A PSP operon transcriptio 99.5 4.3E-14 1.5E-18 140.5 12.5 145 275-476 5-156 (265)
42 1ojl_A Transcriptional regulat 99.5 3.3E-14 1.1E-18 145.9 10.1 149 277-481 2-157 (304)
43 1hqc_A RUVB; extended AAA-ATPa 99.5 5.7E-13 2E-17 135.2 18.2 136 278-470 13-148 (324)
44 3n70_A Transport activator; si 99.5 4.2E-14 1.4E-18 129.2 8.3 122 278-481 2-126 (145)
45 3u61_B DNA polymerase accessor 99.5 1.2E-13 4.1E-18 141.0 11.8 105 278-435 27-132 (324)
46 1d2n_A N-ethylmaleimide-sensit 99.5 1.8E-13 6.3E-18 136.7 10.6 130 331-490 65-198 (272)
47 3pvs_A Replication-associated 99.4 3.7E-13 1.3E-17 145.6 11.4 105 275-435 25-132 (447)
48 3f9v_A Minichromosome maintena 99.4 1.3E-13 4.5E-18 154.1 7.1 159 268-470 286-444 (595)
49 1ypw_A Transitional endoplasmi 99.4 7.4E-13 2.5E-17 152.8 13.4 172 275-494 203-376 (806)
50 1jbk_A CLPB protein; beta barr 99.4 1.9E-13 6.4E-18 125.7 6.5 115 278-434 23-148 (195)
51 3uk6_A RUVB-like 2; hexameric 99.4 2.2E-12 7.6E-17 133.3 15.3 62 278-366 45-108 (368)
52 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 9E-13 3.1E-17 144.6 12.7 124 268-440 13-140 (500)
53 2c9o_A RUVB-like 1; hexameric 99.4 1.9E-12 6.4E-17 139.8 14.8 102 278-410 38-141 (456)
54 1g8p_A Magnesium-chelatase 38 99.4 2.5E-12 8.4E-17 131.7 14.1 147 331-551 46-230 (350)
55 2chg_A Replication factor C sm 99.3 1.1E-11 3.6E-16 116.6 13.9 105 278-434 18-127 (226)
56 3co5_A Putative two-component 99.3 4.1E-13 1.4E-17 122.5 4.0 97 278-435 5-101 (143)
57 1qvr_A CLPB protein; coiled co 99.3 1E-11 3.6E-16 143.8 13.0 164 274-550 168-342 (854)
58 3dzd_A Transcriptional regulat 99.3 1.1E-11 3.7E-16 130.7 10.3 125 331-481 153-283 (368)
59 2p65_A Hypothetical protein PF 99.2 5E-12 1.7E-16 116.3 6.2 116 278-434 23-149 (187)
60 1njg_A DNA polymerase III subu 99.2 9.5E-11 3.2E-15 111.0 14.7 112 278-434 24-151 (250)
61 3pxg_A Negative regulator of g 99.2 1.2E-11 4E-16 134.3 9.5 135 275-494 179-329 (468)
62 1ny5_A Transcriptional regulat 99.2 2.9E-11 1E-15 128.1 11.4 128 330-483 160-294 (387)
63 1iqp_A RFCS; clamp loader, ext 99.2 5.4E-11 1.8E-15 119.9 12.4 106 278-435 26-136 (327)
64 1sxj_D Activator 1 41 kDa subu 99.2 1.3E-11 4.4E-16 126.3 7.4 108 278-435 38-159 (353)
65 1sxj_A Activator 1 95 kDa subu 99.2 8.5E-11 2.9E-15 128.8 14.0 131 278-434 40-176 (516)
66 3te6_A Regulatory protein SIR3 99.2 4.7E-11 1.6E-15 124.1 10.4 167 278-555 21-213 (318)
67 3pxi_A Negative regulator of g 99.2 3.5E-11 1.2E-15 137.4 9.9 136 274-494 178-329 (758)
68 1r6b_X CLPA protein; AAA+, N-t 99.2 1E-10 3.5E-15 133.3 13.6 100 273-410 183-293 (758)
69 2chq_A Replication factor C sm 99.2 3.7E-11 1.3E-15 120.7 8.6 105 278-434 18-127 (319)
70 2qby_B CDC6 homolog 3, cell di 99.2 1.4E-10 4.8E-15 119.9 12.7 62 277-366 20-92 (384)
71 2v1u_A Cell division control p 99.2 1.2E-10 4.1E-15 119.7 12.0 63 277-367 19-90 (387)
72 1jr3_A DNA polymerase III subu 99.1 2.4E-10 8.3E-15 117.6 13.7 105 278-435 17-145 (373)
73 1sxj_B Activator 1 37 kDa subu 99.1 1.1E-10 3.9E-15 117.3 10.1 103 278-434 22-132 (323)
74 2gno_A DNA polymerase III, gam 99.1 1.1E-10 3.8E-15 120.2 9.7 136 281-494 1-143 (305)
75 1in4_A RUVB, holliday junction 99.1 8.5E-10 2.9E-14 114.1 15.9 106 274-435 23-128 (334)
76 1sxj_C Activator 1 40 kDa subu 99.1 3.2E-10 1.1E-14 117.0 12.6 106 275-435 24-136 (340)
77 1l8q_A Chromosomal replication 99.1 2.7E-10 9.2E-15 116.4 11.9 85 331-434 38-125 (324)
78 1fnn_A CDC6P, cell division co 99.1 3.6E-10 1.2E-14 116.6 12.2 112 278-434 18-150 (389)
79 3k1j_A LON protease, ATP-depen 99.1 2.3E-10 7.8E-15 127.8 9.9 44 278-355 42-85 (604)
80 1a5t_A Delta prime, HOLB; zinc 99.0 2.1E-09 7.2E-14 111.1 14.7 121 331-493 25-170 (334)
81 1sxj_E Activator 1 40 kDa subu 99.0 1.2E-09 4.2E-14 112.1 12.7 45 278-354 15-60 (354)
82 3f8t_A Predicted ATPase involv 99.0 3.7E-10 1.3E-14 122.7 8.3 144 268-470 205-349 (506)
83 2qby_A CDC6 homolog 1, cell di 99.0 1E-09 3.5E-14 112.5 10.7 116 278-434 21-157 (386)
84 3bos_A Putative DNA replicatio 99.0 1.6E-09 5.6E-14 103.7 10.1 76 331-434 53-131 (242)
85 2z4s_A Chromosomal replication 98.9 4.1E-09 1.4E-13 113.5 12.5 85 331-434 131-221 (440)
86 3ec2_A DNA replication protein 98.7 2.3E-08 7.8E-13 93.4 8.1 82 331-434 39-127 (180)
87 1w5s_A Origin recognition comp 98.6 1.5E-07 5.1E-12 97.9 11.4 62 278-365 23-96 (412)
88 2qen_A Walker-type ATPase; unk 98.4 3E-06 1E-10 85.6 14.5 52 278-365 13-64 (350)
89 2w58_A DNAI, primosome compone 98.4 8.7E-08 3E-12 90.8 2.9 36 331-366 55-93 (202)
90 3cmw_A Protein RECA, recombina 98.4 1.2E-06 4E-11 107.7 12.7 161 269-435 1013-1203(1706)
91 4akg_A Glutathione S-transfera 98.4 4.7E-07 1.6E-11 115.4 9.4 142 330-494 1267-1422(2695)
92 2kjq_A DNAA-related protein; s 98.3 1.1E-06 3.8E-11 80.8 7.7 59 331-410 37-98 (149)
93 2fna_A Conserved hypothetical 98.3 7.8E-06 2.7E-10 82.6 13.5 52 278-365 14-65 (357)
94 2qgz_A Helicase loader, putati 98.1 6.8E-07 2.3E-11 91.8 1.8 36 331-366 153-192 (308)
95 4akg_A Glutathione S-transfera 98.1 1.5E-05 5E-10 101.9 13.5 67 331-410 646-712 (2695)
96 1tue_A Replication protein E1; 97.9 1.3E-05 4.3E-10 78.6 7.3 77 331-440 59-135 (212)
97 2vhj_A Ntpase P4, P4; non- hyd 97.9 7.1E-06 2.4E-10 85.4 4.7 73 331-411 124-198 (331)
98 1u0j_A DNA replication protein 97.9 3.7E-05 1.3E-09 77.9 9.8 26 331-356 105-130 (267)
99 1ye8_A Protein THEP1, hypothet 97.8 0.00012 4.2E-09 69.1 12.0 27 332-358 2-28 (178)
100 3vkg_A Dynein heavy chain, cyt 97.6 4.4E-05 1.5E-09 98.5 6.9 119 331-470 1305-1432(3245)
101 3vaa_A Shikimate kinase, SK; s 97.6 3.6E-05 1.2E-09 73.0 4.3 44 318-361 12-56 (199)
102 2r2a_A Uncharacterized protein 97.5 0.00011 3.7E-09 71.1 6.2 74 331-410 6-102 (199)
103 4f4c_A Multidrug resistance pr 97.3 0.00024 8.3E-09 86.1 8.0 49 317-365 430-481 (1321)
104 3cmu_A Protein RECA, recombina 97.3 0.00039 1.3E-08 86.8 9.3 78 330-411 1427-1521(2050)
105 3nh6_A ATP-binding cassette SU 97.3 0.00012 4E-09 75.5 3.4 38 318-355 67-105 (306)
106 3vkg_A Dynein heavy chain, cyt 97.2 0.002 6.9E-08 83.5 14.6 66 332-410 606-671 (3245)
107 3trf_A Shikimate kinase, SK; a 97.2 0.00024 8.2E-09 65.8 4.2 31 331-361 6-36 (185)
108 3upu_A ATP-dependent DNA helic 97.2 0.0019 6.4E-08 69.4 11.6 89 331-434 46-153 (459)
109 1qhx_A CPT, protein (chloramph 97.1 0.00034 1.2E-08 64.2 5.0 34 331-364 4-37 (178)
110 4f4c_A Multidrug resistance pr 97.1 0.00028 9.5E-09 85.6 5.4 49 319-367 1093-1144(1321)
111 3qf4_B Uncharacterized ABC tra 97.1 0.00068 2.3E-08 75.6 7.9 39 318-356 368-407 (598)
112 3kb2_A SPBC2 prophage-derived 97.0 0.00044 1.5E-08 62.7 4.5 31 332-362 3-33 (173)
113 2ehv_A Hypothetical protein PH 97.0 0.0023 7.8E-08 61.5 9.6 25 327-351 26-51 (251)
114 4a82_A Cystic fibrosis transme 96.9 0.00076 2.6E-08 74.8 5.9 38 318-355 354-392 (578)
115 1zuh_A Shikimate kinase; alpha 96.9 0.00056 1.9E-08 62.5 4.0 31 331-361 8-38 (168)
116 1y63_A LMAJ004144AAA protein; 96.9 0.00048 1.7E-08 64.4 3.6 30 331-360 11-41 (184)
117 2jeo_A Uridine-cytidine kinase 96.9 0.0005 1.7E-08 67.4 3.9 40 318-357 12-52 (245)
118 1via_A Shikimate kinase; struc 96.9 0.00052 1.8E-08 63.3 3.7 28 332-359 6-33 (175)
119 2iyv_A Shikimate kinase, SK; t 96.9 0.00063 2.2E-08 63.0 4.2 31 331-361 3-33 (184)
120 1z6g_A Guanylate kinase; struc 96.9 0.00044 1.5E-08 66.9 3.2 35 320-354 12-47 (218)
121 3qf4_A ABC transporter, ATP-bi 96.9 0.00053 1.8E-08 76.3 4.3 48 318-365 356-406 (587)
122 1zp6_A Hypothetical protein AT 96.9 0.00056 1.9E-08 63.5 3.6 35 332-366 11-45 (191)
123 1kag_A SKI, shikimate kinase I 96.9 0.00064 2.2E-08 62.1 3.9 29 331-359 5-33 (173)
124 3iij_A Coilin-interacting nucl 96.8 0.00067 2.3E-08 62.7 4.0 30 331-360 12-41 (180)
125 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.0019 6.6E-08 61.0 7.0 36 328-363 20-59 (235)
126 2rhm_A Putative kinase; P-loop 96.8 0.00076 2.6E-08 62.4 3.9 31 331-361 6-36 (193)
127 1svm_A Large T antigen; AAA+ f 96.8 0.00035 1.2E-08 74.0 1.7 36 325-360 163-199 (377)
128 2cdn_A Adenylate kinase; phosp 96.7 0.0011 3.7E-08 62.5 4.5 31 331-361 21-51 (201)
129 2ze6_A Isopentenyl transferase 96.7 0.001 3.5E-08 65.9 4.5 32 332-363 3-34 (253)
130 2orw_A Thymidine kinase; TMTK, 96.7 0.0022 7.4E-08 60.7 6.4 22 332-353 5-26 (184)
131 1tev_A UMP-CMP kinase; ploop, 96.7 0.00093 3.2E-08 61.6 3.7 30 331-360 4-33 (196)
132 3lw7_A Adenylate kinase relate 96.7 0.00096 3.3E-08 59.9 3.6 29 332-361 3-31 (179)
133 1e6c_A Shikimate kinase; phosp 96.7 0.00098 3.4E-08 60.7 3.6 29 332-360 4-32 (173)
134 3t61_A Gluconokinase; PSI-biol 96.7 0.0012 4.2E-08 62.1 4.4 30 331-360 19-48 (202)
135 3tif_A Uncharacterized ABC tra 96.6 0.00043 1.5E-08 68.2 1.0 37 319-355 19-56 (235)
136 2c95_A Adenylate kinase 1; tra 96.6 0.0011 3.8E-08 61.4 3.7 31 331-361 10-40 (196)
137 3nwj_A ATSK2; P loop, shikimat 96.6 0.00039 1.3E-08 69.5 0.5 30 331-360 49-78 (250)
138 2pt5_A Shikimate kinase, SK; a 96.6 0.0014 4.8E-08 59.5 4.0 29 332-360 2-30 (168)
139 3e1s_A Exodeoxyribonuclease V, 96.6 0.0064 2.2E-07 67.6 10.1 32 331-362 205-239 (574)
140 1n0w_A DNA repair protein RAD5 96.6 0.0026 8.8E-08 60.9 6.1 34 332-365 26-68 (243)
141 1htw_A HI0065; nucleotide-bind 96.6 0.00062 2.1E-08 63.2 1.5 33 322-354 24-57 (158)
142 3dl0_A Adenylate kinase; phosp 96.5 0.0014 4.7E-08 62.4 4.0 30 332-361 2-31 (216)
143 2pcj_A ABC transporter, lipopr 96.5 0.00047 1.6E-08 67.3 0.6 37 319-355 18-55 (224)
144 1aky_A Adenylate kinase; ATP:A 96.5 0.0014 4.8E-08 62.7 3.9 31 331-361 5-35 (220)
145 2cbz_A Multidrug resistance-as 96.5 0.00069 2.3E-08 66.8 1.7 37 318-354 18-55 (237)
146 3fb4_A Adenylate kinase; psych 96.5 0.0015 5.2E-08 62.0 4.0 30 332-361 2-31 (216)
147 3cm0_A Adenylate kinase; ATP-b 96.5 0.0015 5.2E-08 60.3 3.9 29 331-359 5-33 (186)
148 1kht_A Adenylate kinase; phosp 96.5 0.0012 4E-08 60.9 3.2 25 331-355 4-28 (192)
149 3g5u_A MCG1178, multidrug resi 96.5 0.0045 1.6E-07 74.9 9.0 37 319-355 1047-1084(1284)
150 2vli_A Antibiotic resistance p 96.5 0.0014 4.7E-08 60.3 3.5 29 331-359 6-34 (183)
151 3hr8_A Protein RECA; alpha and 96.5 0.0055 1.9E-07 64.3 8.6 78 332-409 63-153 (356)
152 2bwj_A Adenylate kinase 5; pho 96.5 0.0014 4.9E-08 60.9 3.6 30 331-360 13-42 (199)
153 1knq_A Gluconate kinase; ALFA/ 96.5 0.0018 6.1E-08 59.4 4.2 29 331-359 9-37 (175)
154 1g6h_A High-affinity branched- 96.5 0.00062 2.1E-08 67.9 1.1 37 319-355 21-58 (257)
155 1b0u_A Histidine permease; ABC 96.5 0.0006 2.1E-08 68.3 1.0 37 319-355 20-57 (262)
156 3gfo_A Cobalt import ATP-bindi 96.5 0.00058 2E-08 69.1 0.8 37 319-355 22-59 (275)
157 1jr3_D DNA polymerase III, del 96.5 0.0036 1.2E-07 64.0 6.8 78 331-435 19-103 (343)
158 1ak2_A Adenylate kinase isoenz 96.5 0.0017 5.7E-08 63.0 4.0 31 331-361 17-47 (233)
159 3g5u_A MCG1178, multidrug resi 96.5 0.0017 5.7E-08 78.7 4.8 47 319-365 404-453 (1284)
160 4g1u_C Hemin import ATP-bindin 96.4 0.00059 2E-08 68.6 0.7 37 318-354 24-61 (266)
161 1qf9_A UMP/CMP kinase, protein 96.4 0.0015 5.2E-08 60.1 3.4 31 331-361 7-37 (194)
162 2p5t_B PEZT; postsegregational 96.4 0.0018 6.2E-08 63.8 4.1 37 331-367 33-69 (253)
163 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0014 4.9E-08 67.8 3.5 34 331-364 172-207 (330)
164 3b9q_A Chloroplast SRP recepto 96.4 0.0044 1.5E-07 63.4 7.1 32 323-354 92-124 (302)
165 2pze_A Cystic fibrosis transme 96.4 0.00077 2.6E-08 66.1 1.3 38 318-355 21-59 (229)
166 1mv5_A LMRA, multidrug resista 96.4 0.00081 2.8E-08 66.4 1.5 37 318-354 15-52 (243)
167 4eun_A Thermoresistant glucoki 96.4 0.0022 7.4E-08 60.7 4.3 33 331-365 30-62 (200)
168 4gp7_A Metallophosphoesterase; 96.4 0.0014 4.7E-08 60.8 2.8 27 324-350 2-29 (171)
169 1ly1_A Polynucleotide kinase; 96.4 0.0015 5.2E-08 59.5 3.1 28 331-358 3-31 (181)
170 1zd8_A GTP:AMP phosphotransfer 96.4 0.0017 5.7E-08 62.6 3.5 30 331-360 8-37 (227)
171 2b8t_A Thymidine kinase; deoxy 96.4 0.0083 2.8E-07 58.9 8.5 31 331-361 13-46 (223)
172 2ixe_A Antigen peptide transpo 96.4 0.00089 3E-08 67.4 1.5 37 319-355 33-70 (271)
173 1ji0_A ABC transporter; ATP bi 96.4 0.00073 2.5E-08 66.7 0.8 37 319-355 20-57 (240)
174 3tr0_A Guanylate kinase, GMP k 96.4 0.002 6.7E-08 60.3 3.8 23 332-354 9-31 (205)
175 2zr9_A Protein RECA, recombina 96.4 0.008 2.7E-07 62.7 8.7 80 330-409 60-153 (349)
176 2olj_A Amino acid ABC transpor 96.3 0.0008 2.7E-08 67.6 1.0 37 319-355 38-75 (263)
177 3fvq_A Fe(3+) IONS import ATP- 96.3 0.00087 3E-08 70.5 1.3 37 319-355 18-55 (359)
178 2ghi_A Transport protein; mult 96.3 0.00096 3.3E-08 66.7 1.5 37 319-355 34-71 (260)
179 1ukz_A Uridylate kinase; trans 96.3 0.002 7E-08 60.5 3.6 31 331-361 16-46 (203)
180 2d2e_A SUFC protein; ABC-ATPas 96.3 0.0012 4E-08 65.6 2.0 35 319-353 17-52 (250)
181 2ff7_A Alpha-hemolysin translo 96.3 0.00081 2.8E-08 66.8 0.8 37 319-355 23-60 (247)
182 3be4_A Adenylate kinase; malar 96.3 0.0019 6.5E-08 61.9 3.4 31 331-361 6-36 (217)
183 3lnc_A Guanylate kinase, GMP k 96.3 0.0013 4.4E-08 63.5 2.2 35 320-354 16-52 (231)
184 2jaq_A Deoxyguanosine kinase; 96.3 0.0024 8.4E-08 59.3 4.0 28 332-359 2-29 (205)
185 2v9p_A Replication protein E1; 96.3 0.001 3.4E-08 68.5 1.4 37 320-356 115-152 (305)
186 2qi9_C Vitamin B12 import ATP- 96.3 0.00099 3.4E-08 66.4 1.3 37 319-355 14-51 (249)
187 3rlf_A Maltose/maltodextrin im 96.3 0.001 3.5E-08 70.5 1.5 37 319-355 17-54 (381)
188 1e4v_A Adenylate kinase; trans 96.3 0.0023 7.9E-08 61.0 3.8 30 332-361 2-31 (214)
189 1vpl_A ABC transporter, ATP-bi 96.3 0.00091 3.1E-08 66.9 1.0 37 319-355 29-66 (256)
190 1zak_A Adenylate kinase; ATP:A 96.3 0.0016 5.4E-08 62.4 2.6 29 331-359 6-34 (222)
191 1tf7_A KAIC; homohexamer, hexa 96.3 0.0058 2E-07 66.8 7.4 48 318-365 25-78 (525)
192 2zu0_C Probable ATP-dependent 96.3 0.0013 4.5E-08 66.0 2.1 36 319-354 34-70 (267)
193 2pbr_A DTMP kinase, thymidylat 96.3 0.0034 1.2E-07 57.8 4.8 30 333-362 3-35 (195)
194 1z47_A CYSA, putative ABC-tran 96.3 0.0012 4.1E-08 69.4 1.8 38 318-355 28-66 (355)
195 1sgw_A Putative ABC transporte 96.3 0.00079 2.7E-08 65.6 0.4 37 319-355 23-60 (214)
196 2ihy_A ABC transporter, ATP-bi 96.2 0.00092 3.1E-08 67.7 0.8 37 319-355 35-72 (279)
197 2yz2_A Putative ABC transporte 96.2 0.00099 3.4E-08 66.8 1.0 36 319-354 21-57 (266)
198 1cke_A CK, MSSA, protein (cyti 96.2 0.0031 1.1E-07 60.0 4.4 29 331-359 6-34 (227)
199 2pez_A Bifunctional 3'-phospho 96.2 0.004 1.4E-07 57.5 4.8 36 331-366 6-44 (179)
200 3tlx_A Adenylate kinase 2; str 96.2 0.0026 8.8E-08 62.5 3.8 31 331-361 30-60 (243)
201 3jvv_A Twitching mobility prot 96.2 0.022 7.5E-07 59.6 10.9 24 331-354 124-147 (356)
202 2nq2_C Hypothetical ABC transp 96.2 0.001 3.6E-08 66.3 0.7 36 319-354 19-55 (253)
203 1gvn_B Zeta; postsegregational 96.2 0.0063 2.2E-07 61.5 6.5 36 331-366 34-69 (287)
204 3uie_A Adenylyl-sulfate kinase 96.1 0.0034 1.2E-07 59.3 4.1 35 332-366 27-64 (200)
205 2it1_A 362AA long hypothetical 96.1 0.0014 4.8E-08 69.0 1.5 37 319-355 17-54 (362)
206 3gd7_A Fusion complex of cysti 96.1 0.0015 5.2E-08 69.4 1.7 37 318-354 34-71 (390)
207 3sr0_A Adenylate kinase; phosp 96.1 0.0035 1.2E-07 60.6 4.2 28 332-359 2-29 (206)
208 2yyz_A Sugar ABC transporter, 96.1 0.0015 5E-08 68.8 1.5 37 319-355 17-54 (359)
209 1nks_A Adenylate kinase; therm 96.1 0.0022 7.4E-08 59.0 2.5 24 332-355 3-26 (194)
210 2z0h_A DTMP kinase, thymidylat 96.1 0.0045 1.5E-07 57.4 4.6 30 333-362 3-35 (197)
211 2onk_A Molybdate/tungstate ABC 96.1 0.0016 5.6E-08 64.4 1.7 35 320-355 14-49 (240)
212 3crm_A TRNA delta(2)-isopenten 96.1 0.0034 1.2E-07 65.2 4.1 33 331-363 6-38 (323)
213 2if2_A Dephospho-COA kinase; a 96.1 0.0029 9.9E-08 59.5 3.3 29 332-361 3-31 (204)
214 1v43_A Sugar-binding transport 96.1 0.0015 5.3E-08 68.9 1.5 37 319-355 25-62 (372)
215 2xb4_A Adenylate kinase; ATP-b 96.1 0.0033 1.1E-07 60.7 3.7 29 332-360 2-30 (223)
216 1g29_1 MALK, maltose transport 96.0 0.0015 5.2E-08 68.9 1.3 37 319-355 17-54 (372)
217 3tui_C Methionine import ATP-b 96.0 0.0017 5.7E-08 68.6 1.5 37 319-355 42-79 (366)
218 2bbs_A Cystic fibrosis transme 96.0 0.0017 5.7E-08 66.2 1.3 36 319-354 52-88 (290)
219 3umf_A Adenylate kinase; rossm 96.0 0.0043 1.5E-07 60.7 4.1 29 331-359 30-58 (217)
220 1uf9_A TT1252 protein; P-loop, 96.0 0.0039 1.3E-07 58.1 3.7 29 331-360 9-37 (203)
221 1znw_A Guanylate kinase, GMP k 96.0 0.0039 1.3E-07 59.3 3.6 29 327-355 16-45 (207)
222 2j41_A Guanylate kinase; GMP, 96.0 0.0036 1.2E-07 58.5 3.3 23 332-354 8-30 (207)
223 1jjv_A Dephospho-COA kinase; P 95.9 0.0038 1.3E-07 58.8 3.4 28 332-360 4-31 (206)
224 3ake_A Cytidylate kinase; CMP 95.9 0.0047 1.6E-07 57.7 4.0 29 332-360 4-32 (208)
225 2v54_A DTMP kinase, thymidylat 95.9 0.0046 1.6E-07 57.8 3.9 32 331-362 5-37 (204)
226 3d31_A Sulfate/molybdate ABC t 95.9 0.0014 4.7E-08 68.7 0.2 36 320-355 15-51 (348)
227 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.0052 1.8E-07 60.8 4.3 36 331-366 5-43 (260)
228 3kl4_A SRP54, signal recogniti 95.9 0.02 7E-07 61.6 9.3 35 330-364 97-134 (433)
229 2bbw_A Adenylate kinase 4, AK4 95.9 0.0056 1.9E-07 59.7 4.4 29 331-359 28-56 (246)
230 2og2_A Putative signal recogni 95.8 0.012 4E-07 61.9 7.0 32 323-354 149-181 (359)
231 1oxx_K GLCV, glucose, ABC tran 95.8 0.0012 4.2E-08 69.1 -0.5 35 320-354 20-55 (353)
232 2plr_A DTMP kinase, probable t 95.8 0.0053 1.8E-07 57.4 3.8 27 331-357 5-31 (213)
233 1cr0_A DNA primase/helicase; R 95.7 0.0034 1.2E-07 62.9 2.2 45 319-363 23-72 (296)
234 2ga8_A Hypothetical 39.9 kDa p 95.7 0.0052 1.8E-07 64.7 3.7 30 331-360 25-54 (359)
235 2pjz_A Hypothetical protein ST 95.7 0.0023 8E-08 64.2 0.9 35 319-354 19-54 (263)
236 2yhs_A FTSY, cell division pro 95.7 0.011 3.6E-07 64.9 5.9 33 322-354 284-317 (503)
237 2wwf_A Thymidilate kinase, put 95.6 0.0032 1.1E-07 59.2 1.5 27 331-357 11-37 (212)
238 3a8t_A Adenylate isopentenyltr 95.6 0.0051 1.8E-07 64.2 2.9 33 332-364 42-74 (339)
239 3kta_A Chromosome segregation 95.6 0.0074 2.5E-07 55.6 3.7 34 322-355 18-51 (182)
240 1kgd_A CASK, peripheral plasma 95.6 0.0075 2.6E-07 56.1 3.7 25 331-355 6-30 (180)
241 2fz4_A DNA repair protein RAD2 95.5 0.019 6.6E-07 56.1 6.8 34 331-364 109-142 (237)
242 3r20_A Cytidylate kinase; stru 95.5 0.0088 3E-07 59.2 4.3 29 331-359 10-38 (233)
243 3thx_B DNA mismatch repair pro 95.5 0.0077 2.6E-07 70.5 4.5 36 318-353 660-696 (918)
244 2qor_A Guanylate kinase; phosp 95.5 0.0077 2.6E-07 57.0 3.7 25 331-355 13-37 (204)
245 3c8u_A Fructokinase; YP_612366 95.5 0.0081 2.8E-07 57.1 3.8 24 332-355 24-47 (208)
246 1xp8_A RECA protein, recombina 95.5 0.022 7.5E-07 59.9 7.4 78 332-409 76-166 (366)
247 2grj_A Dephospho-COA kinase; T 95.5 0.0079 2.7E-07 57.4 3.6 28 333-360 15-42 (192)
248 3cmu_A Protein RECA, recombina 95.5 0.032 1.1E-06 70.0 9.9 81 329-412 1080-1176(2050)
249 1rz3_A Hypothetical protein rb 95.4 0.031 1E-06 52.8 7.6 31 332-362 24-57 (201)
250 4e22_A Cytidylate kinase; P-lo 95.4 0.0097 3.3E-07 58.7 4.2 28 332-359 29-56 (252)
251 2yvu_A Probable adenylyl-sulfa 95.4 0.0091 3.1E-07 55.4 3.8 35 331-365 14-51 (186)
252 1u94_A RECA protein, recombina 95.4 0.044 1.5E-06 57.3 9.4 78 332-409 65-155 (356)
253 1vht_A Dephospho-COA kinase; s 95.4 0.0084 2.9E-07 57.1 3.5 28 332-360 6-33 (218)
254 3asz_A Uridine kinase; cytidin 95.4 0.0076 2.6E-07 56.9 3.1 24 332-355 8-31 (211)
255 2bdt_A BH3686; alpha-beta prot 95.4 0.008 2.7E-07 55.8 3.2 33 332-365 4-36 (189)
256 2eyu_A Twitching motility prot 95.4 0.0059 2E-07 61.0 2.4 33 320-354 16-49 (261)
257 2h92_A Cytidylate kinase; ross 95.4 0.01 3.4E-07 56.4 3.9 30 331-360 4-33 (219)
258 2z43_A DNA repair and recombin 95.3 0.024 8.2E-07 58.0 6.9 34 332-365 109-151 (324)
259 2qt1_A Nicotinamide riboside k 95.3 0.008 2.7E-07 56.7 3.1 28 332-359 23-51 (207)
260 3a00_A Guanylate kinase, GMP k 95.3 0.01 3.4E-07 55.4 3.6 24 332-355 3-26 (186)
261 4a74_A DNA repair and recombin 95.3 0.0095 3.3E-07 56.3 3.4 26 329-354 23-49 (231)
262 3tau_A Guanylate kinase, GMP k 95.3 0.0097 3.3E-07 56.7 3.5 24 332-355 10-33 (208)
263 3dm5_A SRP54, signal recogniti 95.3 0.046 1.6E-06 59.0 9.1 37 330-366 100-139 (443)
264 2cvh_A DNA repair and recombin 95.2 0.017 5.8E-07 54.3 5.1 34 332-365 22-55 (220)
265 3b5x_A Lipid A export ATP-bind 95.2 0.0081 2.8E-07 66.6 3.3 48 318-365 356-406 (582)
266 1nn5_A Similar to deoxythymidy 95.2 0.011 3.6E-07 55.6 3.5 25 331-355 10-34 (215)
267 1lvg_A Guanylate kinase, GMP k 95.2 0.011 3.8E-07 56.0 3.5 25 331-355 5-29 (198)
268 1zu4_A FTSY; GTPase, signal re 95.1 0.037 1.3E-06 57.0 7.6 43 322-364 96-142 (320)
269 2qmh_A HPR kinase/phosphorylas 95.1 0.0087 3E-07 58.3 2.8 42 320-362 24-65 (205)
270 1g5t_A COB(I)alamin adenosyltr 95.1 0.096 3.3E-06 50.6 10.0 33 330-362 28-63 (196)
271 3cmw_A Protein RECA, recombina 95.1 0.023 8E-07 70.3 7.1 79 331-409 733-824 (1706)
272 3foz_A TRNA delta(2)-isopenten 95.1 0.014 4.6E-07 60.5 4.2 33 331-363 11-43 (316)
273 1q3t_A Cytidylate kinase; nucl 95.1 0.013 4.6E-07 56.7 4.0 29 331-359 17-45 (236)
274 3io5_A Recombination and repai 95.1 0.021 7.3E-07 59.3 5.6 36 330-365 28-68 (333)
275 1uj2_A Uridine-cytidine kinase 95.1 0.013 4.5E-07 57.4 3.9 26 332-357 24-49 (252)
276 1ltq_A Polynucleotide kinase; 95.0 0.0093 3.2E-07 59.5 2.5 29 331-359 3-32 (301)
277 3d3q_A TRNA delta(2)-isopenten 94.9 0.014 4.6E-07 61.1 3.6 31 332-362 9-39 (340)
278 1m7g_A Adenylylsulfate kinase; 94.9 0.018 6.1E-07 54.7 4.2 36 331-366 26-65 (211)
279 3b60_A Lipid A export ATP-bind 94.9 0.0075 2.6E-07 66.8 1.7 48 318-365 356-406 (582)
280 3exa_A TRNA delta(2)-isopenten 94.9 0.015 5.1E-07 60.3 3.8 32 331-362 4-35 (322)
281 4eaq_A DTMP kinase, thymidylat 94.9 0.017 5.8E-07 56.4 3.9 29 332-360 28-58 (229)
282 3thx_A DNA mismatch repair pro 94.8 0.017 5.8E-07 67.8 4.5 35 318-352 649-684 (934)
283 1v5w_A DMC1, meiotic recombina 94.8 0.046 1.6E-06 56.5 7.2 37 329-365 120-166 (343)
284 1ex7_A Guanylate kinase; subst 94.7 0.025 8.6E-07 53.9 4.6 28 331-358 2-29 (186)
285 3e70_C DPA, signal recognition 94.7 0.042 1.4E-06 56.8 6.6 23 332-354 131-153 (328)
286 2obl_A ESCN; ATPase, hydrolase 94.6 0.013 4.5E-07 61.1 2.8 33 326-358 66-99 (347)
287 1s96_A Guanylate kinase, GMP k 94.6 0.019 6.6E-07 55.8 3.7 24 332-355 18-41 (219)
288 3fdi_A Uncharacterized protein 94.6 0.023 7.9E-07 54.3 4.1 28 332-359 8-35 (201)
289 3euj_A Chromosome partition pr 94.6 0.015 5.1E-07 63.5 3.0 36 318-354 17-53 (483)
290 3lda_A DNA repair protein RAD5 94.5 0.054 1.9E-06 57.6 7.2 38 328-365 175-222 (400)
291 1sq5_A Pantothenate kinase; P- 94.5 0.0085 2.9E-07 61.0 0.8 23 333-355 83-105 (308)
292 2dpy_A FLII, flagellum-specifi 94.5 0.017 5.6E-07 62.2 3.0 35 322-357 149-184 (438)
293 2yl4_A ATP-binding cassette SU 94.5 0.0078 2.7E-07 66.9 0.5 37 319-355 358-395 (595)
294 2qm8_A GTPase/ATPase; G protei 94.4 0.013 4.4E-07 60.7 2.1 34 321-354 45-79 (337)
295 2f6r_A COA synthase, bifunctio 94.4 0.019 6.5E-07 57.7 3.3 28 332-360 77-104 (281)
296 3ney_A 55 kDa erythrocyte memb 94.4 0.024 8.2E-07 54.7 3.8 25 331-355 20-44 (197)
297 3aez_A Pantothenate kinase; tr 94.4 0.023 8E-07 58.2 3.9 26 330-355 89-115 (312)
298 1m2o_B GTP-binding protein SAR 94.4 0.021 7.1E-07 53.0 3.1 33 320-352 13-45 (190)
299 2dr3_A UPF0273 protein PH0284; 94.4 0.025 8.6E-07 54.0 3.8 33 332-364 25-60 (247)
300 3zvl_A Bifunctional polynucleo 94.2 0.015 5.2E-07 61.8 2.1 34 331-366 259-292 (416)
301 2gza_A Type IV secretion syste 94.2 0.007 2.4E-07 63.3 -0.6 32 331-362 176-209 (361)
302 1yqt_A RNAse L inhibitor; ATP- 94.2 0.018 6E-07 63.5 2.5 34 320-354 37-71 (538)
303 3eph_A TRNA isopentenyltransfe 94.2 0.024 8.1E-07 60.6 3.4 32 331-362 3-34 (409)
304 1gtv_A TMK, thymidylate kinase 94.1 0.012 3.9E-07 55.4 0.9 23 333-355 3-25 (214)
305 2v3c_C SRP54, signal recogniti 94.1 0.075 2.6E-06 57.0 7.3 35 331-365 100-137 (432)
306 1lw7_A Transcriptional regulat 94.1 0.026 8.8E-07 58.6 3.4 26 332-357 172-197 (365)
307 3ice_A Transcription terminati 93.9 0.087 3E-06 56.3 7.2 31 324-354 167-198 (422)
308 1pzn_A RAD51, DNA repair and r 93.9 0.038 1.3E-06 57.4 4.4 41 325-365 125-175 (349)
309 2i3b_A HCR-ntpase, human cance 93.9 0.032 1.1E-06 53.1 3.4 23 332-354 3-25 (189)
310 2ewv_A Twitching motility prot 93.8 0.024 8.3E-07 59.4 2.6 24 331-354 137-160 (372)
311 1x6v_B Bifunctional 3'-phospho 93.7 0.049 1.7E-06 61.3 5.0 36 331-366 53-91 (630)
312 1sky_E F1-ATPase, F1-ATP synth 93.6 0.042 1.5E-06 59.7 4.2 24 331-354 152-175 (473)
313 3gmt_A Adenylate kinase; ssgci 93.6 0.044 1.5E-06 54.2 3.8 27 333-359 11-37 (230)
314 3hdt_A Putative kinase; struct 93.5 0.048 1.6E-06 53.3 4.0 28 332-359 16-43 (223)
315 1z6t_A APAF-1, apoptotic prote 93.5 0.06 2.1E-06 58.8 5.2 45 278-352 125-169 (591)
316 2ffh_A Protein (FFH); SRP54, s 93.5 0.11 3.8E-06 55.7 7.2 41 323-364 92-135 (425)
317 3ux8_A Excinuclease ABC, A sub 93.4 0.033 1.1E-06 62.7 3.0 30 318-347 31-61 (670)
318 1vma_A Cell division protein F 93.4 0.08 2.7E-06 54.2 5.5 34 331-364 105-141 (306)
319 3b85_A Phosphate starvation-in 93.3 0.039 1.3E-06 53.3 3.0 22 332-353 24-45 (208)
320 4aby_A DNA repair protein RECN 93.3 0.013 4.5E-07 61.2 -0.3 36 320-355 50-85 (415)
321 2npi_A Protein CLP1; CLP1-PCF1 93.3 0.024 8.1E-07 61.4 1.5 23 332-354 140-162 (460)
322 3bk7_A ABC transporter ATP-bin 93.2 0.028 9.5E-07 62.9 2.0 34 320-354 107-141 (607)
323 3ux8_A Excinuclease ABC, A sub 93.2 0.027 9.2E-07 63.4 1.9 33 319-351 336-369 (670)
324 1rj9_A FTSY, signal recognitio 93.2 0.05 1.7E-06 55.6 3.8 24 331-354 103-126 (304)
325 1xx6_A Thymidine kinase; NESG, 93.2 0.27 9.2E-06 46.9 8.6 30 332-361 10-42 (191)
326 2qag_B Septin-6, protein NEDD5 93.2 0.024 8.3E-07 60.9 1.4 33 321-353 30-65 (427)
327 1p9r_A General secretion pathw 93.1 0.035 1.2E-06 59.4 2.5 25 331-355 168-192 (418)
328 1nlf_A Regulatory protein REPA 93.1 0.048 1.6E-06 54.1 3.3 26 329-354 28-54 (279)
329 4b3f_X DNA-binding protein smu 93.0 0.13 4.6E-06 57.4 7.2 32 332-363 207-241 (646)
330 1t6n_A Probable ATP-dependent 93.0 0.73 2.5E-05 43.2 11.4 22 331-352 52-73 (220)
331 2iw3_A Elongation factor 3A; a 93.0 0.03 1E-06 65.9 2.0 35 318-352 448-483 (986)
332 1odf_A YGR205W, hypothetical 3 93.0 0.12 4.1E-06 52.3 6.2 24 332-355 33-56 (290)
333 1yqt_A RNAse L inhibitor; ATP- 92.9 0.033 1.1E-06 61.4 2.0 34 321-354 302-336 (538)
334 1f2t_A RAD50 ABC-ATPase; DNA d 92.9 0.058 2E-06 49.1 3.3 30 325-354 18-47 (149)
335 2lkc_A Translation initiation 92.9 0.072 2.5E-06 47.7 3.9 23 330-352 8-30 (178)
336 1ls1_A Signal recognition part 92.8 0.11 3.8E-06 52.6 5.7 41 322-363 91-134 (295)
337 1a7j_A Phosphoribulokinase; tr 92.7 0.056 1.9E-06 54.7 3.2 35 332-366 7-44 (290)
338 1f6b_A SAR1; gtpases, N-termin 92.7 0.031 1.1E-06 52.3 1.1 28 325-352 20-47 (198)
339 3sop_A Neuronal-specific septi 92.7 0.057 1.9E-06 54.1 3.1 23 332-354 4-26 (270)
340 3bk7_A ABC transporter ATP-bin 92.6 0.038 1.3E-06 61.8 2.0 34 321-354 372-406 (607)
341 3qf7_A RAD50; ABC-ATPase, ATPa 92.5 0.047 1.6E-06 57.0 2.5 33 322-354 15-47 (365)
342 2wsm_A Hydrogenase expression/ 92.5 0.1 3.4E-06 49.1 4.6 24 331-354 31-54 (221)
343 2px0_A Flagellar biosynthesis 92.5 0.076 2.6E-06 54.0 3.9 36 330-365 105-144 (296)
344 2f9l_A RAB11B, member RAS onco 92.5 0.066 2.3E-06 49.7 3.3 23 331-353 6-28 (199)
345 2oap_1 GSPE-2, type II secreti 92.5 0.087 3E-06 57.7 4.6 34 331-364 261-296 (511)
346 3ozx_A RNAse L inhibitor; ATP 92.4 0.036 1.2E-06 61.1 1.5 33 322-354 285-318 (538)
347 1oix_A RAS-related protein RAB 92.4 0.065 2.2E-06 49.7 3.0 23 332-354 31-53 (191)
348 2a5y_B CED-4; apoptosis; HET: 92.3 0.12 4E-06 56.6 5.3 44 280-352 131-174 (549)
349 3j16_B RLI1P; ribosome recycli 92.3 0.053 1.8E-06 60.7 2.6 35 320-354 362-402 (608)
350 3tqc_A Pantothenate kinase; bi 92.3 0.074 2.5E-06 55.0 3.5 23 333-355 95-117 (321)
351 2iut_A DNA translocase FTSK; n 92.2 0.59 2E-05 52.0 10.9 35 331-365 215-256 (574)
352 2axn_A 6-phosphofructo-2-kinas 92.2 0.092 3.2E-06 57.6 4.3 35 331-365 36-73 (520)
353 1w4r_A Thymidine kinase; type 92.1 0.53 1.8E-05 45.3 9.1 30 333-362 23-55 (195)
354 2o5v_A DNA replication and rep 92.1 0.085 2.9E-06 55.3 3.8 35 320-354 16-50 (359)
355 3tqf_A HPR(Ser) kinase; transf 92.1 0.064 2.2E-06 51.2 2.5 33 321-353 7-39 (181)
356 1tq4_A IIGP1, interferon-induc 92.1 0.025 8.5E-07 60.5 -0.4 23 332-354 71-93 (413)
357 1u8z_A RAS-related protein RAL 92.1 0.085 2.9E-06 46.3 3.2 23 331-353 5-27 (168)
358 1g8f_A Sulfate adenylyltransfe 92.0 0.1 3.5E-06 57.3 4.5 26 331-356 396-421 (511)
359 3cr8_A Sulfate adenylyltranfer 92.0 0.053 1.8E-06 60.0 2.1 35 332-366 371-409 (552)
360 2iw3_A Elongation factor 3A; a 92.0 0.026 8.7E-07 66.5 -0.4 37 319-355 687-724 (986)
361 2zts_A Putative uncharacterize 92.0 0.15 5.3E-06 48.4 5.2 33 332-364 32-68 (251)
362 1j8m_F SRP54, signal recogniti 91.9 0.15 5.2E-06 51.8 5.4 41 324-364 92-135 (297)
363 2dyk_A GTP-binding protein; GT 91.9 0.087 3E-06 46.2 3.1 22 332-353 3-24 (161)
364 2r8r_A Sensor protein; KDPD, P 91.9 0.15 5.1E-06 50.4 5.0 33 331-363 7-42 (228)
365 2ocp_A DGK, deoxyguanosine kin 91.8 0.087 3E-06 51.0 3.2 25 331-355 3-27 (241)
366 1m8p_A Sulfate adenylyltransfe 91.8 0.1 3.4E-06 58.1 4.1 36 331-366 397-436 (573)
367 2j37_W Signal recognition part 91.8 0.28 9.6E-06 53.7 7.6 33 331-363 102-137 (504)
368 2p67_A LAO/AO transport system 91.7 0.12 4.2E-06 53.2 4.4 23 332-354 58-80 (341)
369 1p5z_B DCK, deoxycytidine kina 91.7 0.041 1.4E-06 54.1 0.8 25 331-355 25-49 (263)
370 1nrj_B SR-beta, signal recogni 91.7 0.1 3.6E-06 48.8 3.5 24 331-354 13-36 (218)
371 1z2a_A RAS-related protein RAB 91.7 0.1 3.4E-06 46.0 3.3 23 331-353 6-28 (168)
372 1ek0_A Protein (GTP-binding pr 91.6 0.092 3.1E-06 46.3 3.0 23 331-353 4-26 (170)
373 1kao_A RAP2A; GTP-binding prot 91.6 0.098 3.3E-06 45.9 3.1 23 331-353 4-26 (167)
374 2f1r_A Molybdopterin-guanine d 91.6 0.048 1.7E-06 51.1 1.2 24 332-355 4-27 (171)
375 4edh_A DTMP kinase, thymidylat 91.6 0.1 3.4E-06 50.5 3.4 24 331-354 7-30 (213)
376 2vp4_A Deoxynucleoside kinase; 91.6 0.094 3.2E-06 50.6 3.2 26 333-359 23-48 (230)
377 2ce2_X GTPase HRAS; signaling 91.5 0.1 3.5E-06 45.6 3.0 23 331-353 4-26 (166)
378 2wji_A Ferrous iron transport 91.5 0.098 3.3E-06 47.0 3.0 22 331-352 4-25 (165)
379 3v9p_A DTMP kinase, thymidylat 91.3 0.097 3.3E-06 51.3 2.9 23 332-354 27-49 (227)
380 1xjc_A MOBB protein homolog; s 91.3 0.12 4E-06 48.6 3.4 23 332-354 6-28 (169)
381 1np6_A Molybdopterin-guanine d 91.2 0.12 4.1E-06 48.5 3.4 24 331-354 7-30 (174)
382 1pui_A ENGB, probable GTP-bind 91.2 0.071 2.4E-06 49.5 1.8 27 326-352 21-48 (210)
383 2ged_A SR-beta, signal recogni 91.2 0.13 4.4E-06 47.0 3.5 23 331-353 49-71 (193)
384 2wjg_A FEOB, ferrous iron tran 91.2 0.11 3.8E-06 47.1 3.0 22 331-352 8-29 (188)
385 2zej_A Dardarin, leucine-rich 91.2 0.092 3.1E-06 48.1 2.5 21 332-352 4-24 (184)
386 1z0j_A RAB-22, RAS-related pro 91.1 0.12 4.2E-06 45.6 3.2 24 331-354 7-30 (170)
387 2qnr_A Septin-2, protein NEDD5 91.1 0.081 2.8E-06 53.7 2.2 29 320-353 13-41 (301)
388 2nzj_A GTP-binding protein REM 91.0 0.12 4.1E-06 46.0 3.1 22 331-352 5-26 (175)
389 3qks_A DNA double-strand break 90.9 0.14 4.8E-06 48.8 3.6 32 325-356 18-49 (203)
390 1c9k_A COBU, adenosylcobinamid 90.9 0.13 4.3E-06 49.0 3.2 31 333-364 2-32 (180)
391 1c1y_A RAS-related protein RAP 90.9 0.13 4.4E-06 45.3 3.1 23 331-353 4-26 (167)
392 1z08_A RAS-related protein RAB 90.9 0.13 4.6E-06 45.4 3.3 23 331-353 7-29 (170)
393 1wms_A RAB-9, RAB9, RAS-relate 90.9 0.13 4.5E-06 45.9 3.2 23 331-353 8-30 (177)
394 1g16_A RAS-related protein SEC 90.8 0.13 4.4E-06 45.4 3.0 23 331-353 4-26 (170)
395 1ky3_A GTP-binding protein YPT 90.8 0.14 4.7E-06 45.8 3.2 23 331-353 9-31 (182)
396 2rcn_A Probable GTPase ENGC; Y 90.8 0.07 2.4E-06 56.0 1.4 38 318-355 203-240 (358)
397 2j9r_A Thymidine kinase; TK1, 90.8 0.8 2.7E-05 44.7 8.9 29 334-362 32-63 (214)
398 1r2q_A RAS-related protein RAB 90.7 0.14 4.9E-06 45.0 3.3 22 331-352 7-28 (170)
399 3bc1_A RAS-related protein RAB 90.7 0.14 4.8E-06 46.2 3.3 23 331-353 12-34 (195)
400 2erx_A GTP-binding protein DI- 90.6 0.14 4.7E-06 45.2 3.1 22 331-352 4-25 (172)
401 2qag_C Septin-7; cell cycle, c 90.6 0.11 3.8E-06 55.5 2.9 31 319-354 25-55 (418)
402 1bif_A 6-phosphofructo-2-kinas 90.6 0.13 4.6E-06 55.2 3.5 25 331-355 40-64 (469)
403 3q85_A GTP-binding protein REM 90.6 0.14 4.8E-06 45.3 3.1 20 332-351 4-23 (169)
404 1r8s_A ADP-ribosylation factor 90.5 0.15 5.2E-06 44.9 3.3 22 332-353 2-23 (164)
405 3tmk_A Thymidylate kinase; pho 90.5 0.21 7E-06 48.6 4.4 28 331-358 6-33 (216)
406 4ag6_A VIRB4 ATPase, type IV s 90.4 0.26 8.8E-06 51.3 5.3 34 329-362 34-70 (392)
407 3lv8_A DTMP kinase, thymidylat 90.4 0.15 5E-06 50.4 3.2 24 331-354 28-51 (236)
408 2gk6_A Regulator of nonsense t 90.3 0.23 7.8E-06 55.4 5.2 23 331-353 196-218 (624)
409 3q72_A GTP-binding protein RAD 90.3 0.13 4.6E-06 45.3 2.7 21 331-351 3-23 (166)
410 1z0f_A RAB14, member RAS oncog 90.3 0.16 5.6E-06 45.2 3.3 23 331-353 16-38 (179)
411 1upt_A ARL1, ADP-ribosylation 90.2 0.18 6E-06 44.7 3.4 22 331-352 8-29 (171)
412 2fn4_A P23, RAS-related protei 90.1 0.15 5.3E-06 45.4 3.0 23 331-353 10-32 (181)
413 1e69_A Chromosome segregation 90.1 0.14 4.8E-06 52.1 3.0 32 323-354 17-48 (322)
414 2a9k_A RAS-related protein RAL 90.1 0.16 5.5E-06 45.6 3.1 23 331-353 19-41 (187)
415 4dsu_A GTPase KRAS, isoform 2B 90.1 0.17 5.7E-06 45.6 3.2 23 331-353 5-27 (189)
416 3clv_A RAB5 protein, putative; 90.1 0.17 5.8E-06 45.8 3.2 23 331-353 8-30 (208)
417 2y8e_A RAB-protein 6, GH09086P 90.1 0.16 5.5E-06 45.2 3.0 22 331-352 15-36 (179)
418 3con_A GTPase NRAS; structural 90.0 0.17 5.8E-06 46.0 3.3 23 331-353 22-44 (190)
419 3ozx_A RNAse L inhibitor; ATP 90.0 0.11 3.8E-06 57.2 2.3 25 330-354 24-49 (538)
420 2hf9_A Probable hydrogenase ni 90.0 0.31 1.1E-05 45.8 5.1 24 331-354 39-62 (226)
421 2g6b_A RAS-related protein RAB 90.0 0.17 6E-06 45.2 3.2 23 331-353 11-33 (180)
422 2r6a_A DNAB helicase, replicat 89.9 0.18 6.2E-06 53.9 3.8 44 321-364 193-241 (454)
423 2oil_A CATX-8, RAS-related pro 89.9 0.18 6.1E-06 46.1 3.3 23 331-353 26-48 (193)
424 3tw8_B RAS-related protein RAB 89.9 0.16 5.6E-06 45.3 2.9 22 331-352 10-31 (181)
425 1xti_A Probable ATP-dependent 89.9 2.2 7.5E-05 43.0 11.8 21 331-351 46-66 (391)
426 4tmk_A Protein (thymidylate ki 89.9 0.17 5.8E-06 49.0 3.2 23 332-354 5-27 (213)
427 1wb9_A DNA mismatch repair pro 89.9 0.17 5.7E-06 58.5 3.7 35 318-353 595-630 (800)
428 2hxs_A RAB-26, RAS-related pro 89.8 0.17 5.9E-06 45.2 3.1 22 331-352 7-28 (178)
429 2www_A Methylmalonic aciduria 89.8 0.52 1.8E-05 48.8 7.1 24 331-354 75-98 (349)
430 3j16_B RLI1P; ribosome recycli 89.8 0.13 4.6E-06 57.5 2.8 27 328-354 100-127 (608)
431 2efe_B Small GTP-binding prote 89.8 0.19 6.4E-06 45.1 3.3 23 331-353 13-35 (181)
432 2gj8_A MNME, tRNA modification 89.8 0.16 5.5E-06 46.2 2.9 23 331-353 5-27 (172)
433 3t1o_A Gliding protein MGLA; G 89.8 0.18 6.3E-06 45.6 3.3 24 331-354 15-38 (198)
434 3kkq_A RAS-related protein M-R 89.7 0.19 6.5E-06 45.3 3.3 23 331-353 19-41 (183)
435 1m7b_A RND3/RHOE small GTP-bin 89.6 0.18 6.1E-06 45.9 3.0 23 331-353 8-30 (184)
436 3ld9_A DTMP kinase, thymidylat 89.6 0.19 6.6E-06 49.1 3.4 26 331-356 22-47 (223)
437 2bme_A RAB4A, RAS-related prot 89.6 0.18 6.3E-06 45.4 3.0 23 331-353 11-33 (186)
438 3vkw_A Replicase large subunit 89.5 0.27 9.4E-06 53.0 4.8 22 331-352 162-183 (446)
439 1mh1_A RAC1; GTP-binding, GTPa 89.5 0.2 6.9E-06 44.9 3.3 23 331-353 6-28 (186)
440 2cxx_A Probable GTP-binding pr 89.5 0.17 5.8E-06 45.7 2.8 21 332-352 3-23 (190)
441 1svi_A GTP-binding protein YSX 89.4 0.19 6.5E-06 45.8 3.0 22 331-352 24-45 (195)
442 1w36_D RECD, exodeoxyribonucle 89.4 0.14 4.9E-06 57.0 2.6 24 331-354 165-188 (608)
443 4i1u_A Dephospho-COA kinase; s 89.4 0.22 7.4E-06 48.4 3.5 30 332-362 11-40 (210)
444 3sfz_A APAF-1, apoptotic pepti 89.3 0.29 9.9E-06 57.4 5.2 46 278-353 125-170 (1249)
445 3pqc_A Probable GTP-binding pr 89.3 0.2 6.7E-06 45.4 3.0 23 331-353 24-46 (195)
446 2gf9_A RAS-related protein RAB 89.3 0.21 7.3E-06 45.5 3.3 23 331-353 23-45 (189)
447 3tkl_A RAS-related protein RAB 89.2 0.22 7.4E-06 45.4 3.3 23 331-353 17-39 (196)
448 3hjn_A DTMP kinase, thymidylat 89.2 0.34 1.2E-05 46.0 4.7 29 333-361 3-34 (197)
449 2bov_A RAla, RAS-related prote 89.2 0.22 7.4E-06 45.7 3.3 23 331-353 15-37 (206)
450 3p32_A Probable GTPase RV1496/ 89.2 0.32 1.1E-05 50.3 4.8 33 331-363 80-115 (355)
451 3bwd_D RAC-like GTP-binding pr 89.1 0.22 7.7E-06 44.6 3.3 23 331-353 9-31 (182)
452 1tf7_A KAIC; homohexamer, hexa 89.1 0.21 7.3E-06 54.4 3.6 32 332-363 283-317 (525)
453 3bh0_A DNAB-like replicative h 89.1 0.36 1.2E-05 49.1 5.1 38 327-364 64-105 (315)
454 1x3s_A RAS-related protein RAB 89.0 0.23 7.7E-06 45.1 3.3 23 331-353 16-38 (195)
455 3qkt_A DNA double-strand break 89.0 0.15 5.2E-06 52.3 2.3 29 326-354 19-47 (339)
456 1ewq_A DNA mismatch repair pro 89.0 0.2 6.9E-06 57.5 3.5 35 318-354 566-600 (765)
457 1vg8_A RAS-related protein RAB 88.9 0.23 7.8E-06 45.7 3.2 23 331-353 9-31 (207)
458 3ihw_A Centg3; RAS, centaurin, 88.9 0.24 8.1E-06 45.5 3.3 24 330-353 20-43 (184)
459 2atv_A RERG, RAS-like estrogen 88.8 0.23 8E-06 45.6 3.2 23 331-353 29-51 (196)
460 2i1q_A DNA repair and recombin 88.8 0.2 6.8E-06 50.7 3.0 25 329-353 96-121 (322)
461 4hlc_A DTMP kinase, thymidylat 88.8 0.24 8.3E-06 47.4 3.4 28 333-360 5-34 (205)
462 2iwr_A Centaurin gamma 1; ANK 88.8 0.18 6E-06 45.3 2.3 23 331-353 8-30 (178)
463 1yrb_A ATP(GTP)binding protein 88.8 0.38 1.3E-05 46.4 4.9 34 331-364 15-50 (262)
464 3t5g_A GTP-binding protein RHE 88.8 0.22 7.7E-06 44.7 3.0 22 331-352 7-28 (181)
465 3k53_A Ferrous iron transport 88.8 0.2 7E-06 49.3 3.0 23 331-353 4-26 (271)
466 1z06_A RAS-related protein RAB 88.7 0.24 8.3E-06 45.1 3.2 22 331-352 21-42 (189)
467 2a5j_A RAS-related protein RAB 88.6 0.25 8.5E-06 45.2 3.3 23 331-353 22-44 (191)
468 3c5c_A RAS-like protein 12; GD 88.6 0.25 8.4E-06 45.4 3.2 23 331-353 22-44 (187)
469 2fg5_A RAB-22B, RAS-related pr 88.6 0.23 7.8E-06 45.6 3.0 23 331-353 24-46 (192)
470 1zd9_A ADP-ribosylation factor 88.6 0.25 8.6E-06 45.2 3.3 23 331-353 23-45 (188)
471 1ko7_A HPR kinase/phosphatase; 88.6 0.19 6.3E-06 51.9 2.6 34 320-353 134-167 (314)
472 3dz8_A RAS-related protein RAB 88.6 0.23 8E-06 45.4 3.0 24 331-354 24-47 (191)
473 3reg_A RHO-like small GTPase; 88.6 0.25 8.7E-06 45.2 3.3 23 331-353 24-46 (194)
474 2p5s_A RAS and EF-hand domain 88.5 0.25 8.7E-06 45.6 3.3 23 331-353 29-51 (199)
475 1zbd_A Rabphilin-3A; G protein 88.5 0.24 8.3E-06 45.6 3.1 23 331-353 9-31 (203)
476 2gf0_A GTP-binding protein DI- 88.4 0.24 8.2E-06 45.2 3.0 22 331-352 9-30 (199)
477 2wjy_A Regulator of nonsense t 88.3 0.38 1.3E-05 55.5 5.2 24 330-353 371-394 (800)
478 2bcg_Y Protein YP2, GTP-bindin 88.3 0.25 8.5E-06 45.7 3.0 23 331-353 9-31 (206)
479 3cph_A RAS-related protein SEC 88.3 0.27 9.2E-06 45.5 3.3 23 331-353 21-43 (213)
480 3oes_A GTPase rhebl1; small GT 88.3 0.25 8.5E-06 45.7 3.0 23 331-353 25-47 (201)
481 1moz_A ARL1, ADP-ribosylation 88.1 0.18 6.1E-06 45.4 1.9 21 331-351 19-39 (183)
482 3lxx_A GTPase IMAP family memb 88.1 0.25 8.6E-06 47.4 3.1 23 331-353 30-52 (239)
483 1ksh_A ARF-like protein 2; sma 88.0 0.27 9.2E-06 44.5 3.0 22 331-352 19-40 (186)
484 4bas_A ADP-ribosylation factor 88.0 0.24 8.4E-06 45.1 2.8 23 330-352 17-39 (199)
485 1zj6_A ADP-ribosylation factor 88.0 0.26 8.9E-06 44.8 2.9 22 331-352 17-38 (187)
486 2h57_A ADP-ribosylation factor 88.0 0.2 6.9E-06 45.7 2.2 24 330-353 21-44 (190)
487 2fh5_B SR-beta, signal recogni 87.9 0.3 1E-05 45.5 3.3 23 331-353 8-30 (214)
488 2ygr_A Uvrabc system protein A 87.9 0.16 5.4E-06 59.9 1.7 32 319-350 656-688 (993)
489 2h17_A ADP-ribosylation factor 87.9 0.23 7.9E-06 45.0 2.5 22 331-352 22-43 (181)
490 1fzq_A ADP-ribosylation factor 87.8 0.25 8.5E-06 45.1 2.7 23 331-353 17-39 (181)
491 2gks_A Bifunctional SAT/APS ki 87.8 0.4 1.4E-05 52.9 4.8 35 331-365 373-410 (546)
492 4gzl_A RAS-related C3 botulinu 87.7 0.28 9.6E-06 45.7 3.0 24 330-353 30-53 (204)
493 2cjw_A GTP-binding protein GEM 87.7 0.3 1E-05 45.2 3.2 23 331-353 7-29 (192)
494 2vf7_A UVRA2, excinuclease ABC 87.7 0.093 3.2E-06 60.9 -0.4 34 320-353 512-547 (842)
495 1gwn_A RHO-related GTP-binding 87.7 0.28 9.6E-06 46.1 3.0 23 331-353 29-51 (205)
496 2gco_A H9, RHO-related GTP-bin 87.6 0.39 1.3E-05 44.5 3.9 24 330-353 25-48 (201)
497 2ew1_A RAS-related protein RAB 87.6 0.28 9.7E-06 46.0 3.0 23 331-353 27-49 (201)
498 2yv5_A YJEQ protein; hydrolase 87.5 0.31 1.1E-05 49.4 3.4 23 331-354 166-188 (302)
499 2fu5_C RAS-related protein RAB 87.4 0.19 6.6E-06 45.3 1.6 22 331-352 9-30 (183)
500 2fv8_A H6, RHO-related GTP-bin 87.4 0.29 9.9E-06 45.6 2.9 23 330-352 25-47 (207)
No 1
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.98 E-value=3.4e-32 Score=284.61 Aligned_cols=288 Identities=60% Similarity=0.971 Sum_probs=220.6
Q ss_pred CCCChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCCh
Q 008176 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (575)
Q Consensus 264 ~~~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGK 343 (575)
++.+++++.+.|++.|+||+++++.|..++..++++....... .....++.++||+|||||||
T Consensus 2 ~~~~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~-----------------~~~~~~~~~vll~GppGtGK 64 (363)
T 3hws_A 2 ALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTS-----------------NGVELGKSNILLIGPTGSGK 64 (363)
T ss_dssp CCCCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCS-----------------SSCCCCCCCEEEECCTTSSH
T ss_pred CCCCHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhcccccc-----------------ccccCCCCeEEEECCCCCCH
Confidence 3568999999999999999999999999998777754432211 11223457999999999999
Q ss_pred HHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchH
Q 008176 344 TLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (575)
Q Consensus 344 TtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e 423 (575)
|++|+++|+.++.+|+.++++++...+|+|+.....++..+..+...+....++||||||||++...+.....+.+.+++
T Consensus 65 T~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~ 144 (363)
T 3hws_A 65 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGE 144 (363)
T ss_dssp HHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHH
T ss_pred HHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchH
Confidence 99999999999999999999998877899987677888888877666666789999999999999887666666667777
Q ss_pred HHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcc-cCCCCCCchhhhhccCCCCh
Q 008176 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD-SSIGFGAPVRANMRAGGVTD 502 (575)
Q Consensus 424 ~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~-~~IgF~~p~~e~~~~~~l~~ 502 (575)
++|+.||++|||..+.+++.+.+.....+.+++.++|++||+++++.++++.+.++... ..++|.........
T Consensus 145 ~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~------ 218 (363)
T 3hws_A 145 GVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSD------ 218 (363)
T ss_dssp HHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------C------
T ss_pred HHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCcccccccccc------
Confidence 79999999999888888888888888888889999999999999999999999887765 78888765443211
Q ss_pred HHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHhhCCCeEEeC
Q 008176 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVSASVS 574 (575)
Q Consensus 503 ~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~~~~~~~~~~i~l~~~ 574 (575)
......+.+.+..+++..+++.|+|++|++.++.+.+++.+++.+|+..+++.++++|.+.+...++.++++
T Consensus 219 ~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~ 290 (363)
T 3hws_A 219 KASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFR 290 (363)
T ss_dssp CSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEEC
T ss_pred chhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEEC
Confidence 123467888889999999999999999999999999999999999999877889999999999999998876
No 2
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.97 E-value=8.6e-30 Score=267.29 Aligned_cols=293 Identities=53% Similarity=0.865 Sum_probs=205.5
Q ss_pred CCCCChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhh--------cccccCCCCCCCCCCCCCCcccccCccEE
Q 008176 263 NKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESS--------QKRSAGESSSCTTDGVDDDTVELEKSNIL 334 (575)
Q Consensus 263 ~~~~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~--------~~~~~~~~~~~~~~~l~~i~v~i~~~~VL 334 (575)
....+++++.+.|++.|+||+++|+.|..++.+|+++...... ...+.+ +...+.....++|
T Consensus 7 ~~~~~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~----------~~~~~~~~~~~il 76 (376)
T 1um8_A 7 SYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELE----------HLEEVELSKSNIL 76 (376)
T ss_dssp SCCCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHH----------HHHHTTCCCCCEE
T ss_pred cCCCCHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccc----------cccccccCCCCEE
Confidence 3567899999999999999999999999999888877553220 000000 0000112346899
Q ss_pred EEcCCCCChHHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhc
Q 008176 335 LMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (575)
Q Consensus 335 L~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~ 414 (575)
|+||||||||++|+++|+.++.+++.+++..+...+|+|+.....+...+......+....++||||||+|.+...+...
T Consensus 77 l~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~ 156 (376)
T 1um8_A 77 LIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENR 156 (376)
T ss_dssp EECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-------
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCC
Confidence 99999999999999999999999999999998877888887667777777665555556788999999999999886655
Q ss_pred ccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhh
Q 008176 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 415 ~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~ 494 (575)
....+.+++.+|+.|+++||+..+.+|..+.+...+.+.+++.++|+++|+++|+.++++++.+|.....++|+.+....
T Consensus 157 ~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~ 236 (376)
T 1um8_A 157 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSK 236 (376)
T ss_dssp -------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCT
T ss_pred ceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhc
Confidence 55666777779999999999988888888888888888889999999999999988899999887767788998765431
Q ss_pred hccCCCChHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHhhCCCeEEeC
Q 008176 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVSASVS 574 (575)
Q Consensus 495 ~~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~~~~~~~~~~i~l~~~ 574 (575)
. ....+.+.+...++.+.++.|+|++|++.++.|.+|+++++.+|+...++.++++|.+.+...++.+.++
T Consensus 237 ~---------~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (376)
T 1um8_A 237 K---------EQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFE 307 (376)
T ss_dssp T---------TTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEEC
T ss_pred c---------chhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEEC
Confidence 0 0123445566667777789999999999999999999999999999877888899999998888888775
No 3
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.95 E-value=1.3e-27 Score=258.40 Aligned_cols=233 Identities=42% Similarity=0.690 Sum_probs=185.7
Q ss_pred CCChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChH
Q 008176 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (575)
Q Consensus 265 ~~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKT 344 (575)
..+|+++.+.|+++|+||+++|+.|..++.++|++..... ......+++++||+||||||||
T Consensus 3 ~~tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~------------------~~~~~~~~~~iLl~GppGtGKT 64 (444)
T 1g41_A 3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQE------------------PLRHEVTPKNILMIGPTGVGKT 64 (444)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCT------------------TTTTTCCCCCEEEECCTTSSHH
T ss_pred CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhcccc------------------ccccccCCceEEEEcCCCCCHH
Confidence 3689999999999999999999999999998887643211 1122234579999999999999
Q ss_pred HHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhch------------------------------------
Q 008176 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSD------------------------------------ 388 (575)
Q Consensus 345 tLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~------------------------------------ 388 (575)
++|+++|+.++.+|+.++++.+...+|+|++....++.+|..+.
T Consensus 65 ~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~ 144 (444)
T 1g41_A 65 EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWG 144 (444)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC------------------------
T ss_pred HHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999988768999765666665554330
Q ss_pred ----------------------------------------hh--------------------------------------
Q 008176 389 ----------------------------------------YN-------------------------------------- 390 (575)
Q Consensus 389 ----------------------------------------~~-------------------------------------- 390 (575)
..
T Consensus 145 ~~~v~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~ 224 (444)
T 1g41_A 145 EVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALK 224 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHH
Confidence 00
Q ss_pred --------------------HHh-hccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCC
Q 008176 391 --------------------VAA-AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHP 449 (575)
Q Consensus 391 --------------------l~~-~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~ 449 (575)
+.. ...+|+++||||++....+ +.++|.+++++|++||++||+.++++
T Consensus 225 ~l~~~e~~~l~~~~~~~~~ai~~ae~~~il~~DEidki~~~~~--~~~~D~s~egvq~aLL~~le~~~~~~--------- 293 (444)
T 1g41_A 225 ALIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGE--YSGADVSREGVQRDLLPLVEGSTVST--------- 293 (444)
T ss_dssp -CCGGGSCSSCCHHHHHHHHHHHHHHHCEEEEETGGGGSCCSS--CSSSHHHHHHHHHHHHHHHHCCEEEE---------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHhccCCeeeHHHHHHHhhccC--CCCCCchHHHHHHHHHHHhccccccc---------
Confidence 011 2577999999999986532 35788999999999999999887764
Q ss_pred CCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhhcchhhhhcCCCCcccc
Q 008176 450 RGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVG 529 (575)
Q Consensus 450 ~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~ 529 (575)
+ ...+++++++|||||+|.. . ...| +.|+|++
T Consensus 294 ~--~~~~d~~~ilfI~~gaf~~----------------~-------------------------~~~d-----lipel~~ 325 (444)
T 1g41_A 294 K--HGMVKTDHILFIASGAFQV----------------A-------------------------RPSD-----LIPELQG 325 (444)
T ss_dssp T--TEEEECTTCEEEEEECCSS----------------C-------------------------CGGG-----SCHHHHT
T ss_pred c--cceecCCcEEEEecccccc----------------C-------------------------Chhh-----cchHHhc
Confidence 1 2578999999999998741 0 0112 5599999
Q ss_pred ccceEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHhhCCCeEEeC
Q 008176 530 RFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVSASVS 574 (575)
Q Consensus 530 Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~~~~~~~~~~i~l~~~ 574 (575)
||+.++.|++|+++++.+|++++.+.+.++|.+++...|++|+|+
T Consensus 326 R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~ 370 (444)
T 1g41_A 326 RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFT 370 (444)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEEC
T ss_pred ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEEC
Confidence 999999999999999999999999999999999999999999987
No 4
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1e-23 Score=225.08 Aligned_cols=174 Identities=24% Similarity=0.376 Sum_probs=141.9
Q ss_pred hhcccccChHHHHHHHHHHHHhhh--hhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHY--MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLA 351 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~--~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA 351 (575)
.+++ |.|++++|+.|.++|..+. +.++.....+ +++++||+||||||||++|+++|
T Consensus 146 ~~~d-IgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~---------------------~prGvLL~GPPGTGKTllAkAiA 203 (405)
T 4b4t_J 146 TYDM-VGGLTKQIKEIKEVIELPVKHPELFESLGIA---------------------QPKGVILYGPPGTGKTLLARAVA 203 (405)
T ss_dssp CGGG-SCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC---------------------CCCCEEEESCSSSSHHHHHHHHH
T ss_pred CHHH-hCCHHHHHHHHHHHHHHHHhCHHHHHhCCCC---------------------CCCceEEeCCCCCCHHHHHHHHH
Confidence 4554 8999999999999998543 3344443332 24789999999999999999999
Q ss_pred HHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHH
Q 008176 352 RYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (575)
Q Consensus 352 ~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~ 431 (575)
+.++.+|+.++++++. ..|+|++ ++.++.+|..++. ..||||||||||.+...|...+.+.+....++.+.||.
T Consensus 204 ~e~~~~f~~v~~s~l~-sk~vGes-e~~vr~lF~~Ar~----~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~ 277 (405)
T 4b4t_J 204 HHTDCKFIRVSGAELV-QKYIGEG-SRMVRELFVMARE----HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLN 277 (405)
T ss_dssp HHHTCEEEEEEGGGGS-CSSTTHH-HHHHHHHHHHHHH----TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHH
T ss_pred HhhCCCceEEEhHHhh-ccccchH-HHHHHHHHHHHHH----hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHH
Confidence 9999999999999988 6799998 8889999998763 57999999999999998876655555555668899999
Q ss_pred HhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHh-hhcccCCCCCCchhhh
Q 008176 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (575)
Q Consensus 432 ~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~-rr~~~~IgF~~p~~e~ 494 (575)
.|||.. ...++++|+|||.++ +|.++.+ +||+..|.|+.|+.+.
T Consensus 278 ~lDg~~-------------------~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~ 323 (405)
T 4b4t_J 278 QLDGFE-------------------TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAA 323 (405)
T ss_dssp HHHTTT-------------------CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHH
T ss_pred hhhccC-------------------CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHH
Confidence 999621 245688899999887 7776653 5999999999999876
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=7.7e-23 Score=219.57 Aligned_cols=216 Identities=22% Similarity=0.305 Sum_probs=158.8
Q ss_pred hhcccccChHHHHHHHHHHHHhhh--hhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHY--MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLA 351 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~--~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA 351 (575)
.+++ |.|++++|+.|.+.|..+. ..++.....+ +++++||+||||||||++|+++|
T Consensus 180 ~~~D-IgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---------------------~prGvLLyGPPGTGKTlLAkAiA 237 (437)
T 4b4t_I 180 SYSD-IGGLESQIQEIKESVELPLTHPELYEEMGIK---------------------PPKGVILYGAPGTGKTLLAKAVA 237 (437)
T ss_dssp CGGG-TCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---------------------CCSEEEEESSTTTTHHHHHHHHH
T ss_pred ccee-cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---------------------CCCCCceECCCCchHHHHHHHHH
Confidence 4554 8999999999999997543 3344444333 23789999999999999999999
Q ss_pred HHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHH
Q 008176 352 RYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (575)
Q Consensus 352 ~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~ 431 (575)
+.++.+|+.++++++. ..|+|++ ++.++.+|..+.. ..||||||||+|.+...|...+.+.+....++.+.||.
T Consensus 238 ~e~~~~fi~v~~s~l~-sk~vGes-ek~ir~lF~~Ar~----~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~ 311 (437)
T 4b4t_I 238 NQTSATFLRIVGSELI-QKYLGDG-PRLCRQIFKVAGE----NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLN 311 (437)
T ss_dssp HHHTCEEEEEESGGGC-CSSSSHH-HHHHHHHHHHHHH----TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHH
T ss_pred HHhCCCEEEEEHHHhh-hccCchH-HHHHHHHHHHHHh----cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHH
Confidence 9999999999999998 5799998 8889999988763 57999999999999998876655555555567888888
Q ss_pred HhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHH-hhhcccCCCCCCchhhhhccCCCChHHHHHHH
Q 008176 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (575)
Q Consensus 432 ~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~-~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~l 509 (575)
.|||. -...++++|+|||.++ +|.++. .+||+..|.|+.|+.+. +.++...+
T Consensus 312 ~lDg~-------------------~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~-------R~~Il~~~ 365 (437)
T 4b4t_I 312 QLDGF-------------------DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLST-------KKKILGIH 365 (437)
T ss_dssp HHHHC-------------------CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHH-------HHHHHHHH
T ss_pred HhhCc-------------------CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHH-------HHHHHHHH
Confidence 88852 1245688899999888 666654 35999999999998876 23333333
Q ss_pred HhhhcchhhhhcCCCCcc-ccccceEEEcCCCCHHHHHHHHhhhH
Q 008176 510 METVESSDLIAYGLIPEF-VGRFPVLVSLLALTENQLVQVLTEPK 553 (575)
Q Consensus 510 l~~l~~~dl~~~gl~Pef-i~Rf~~ii~~~~LsedeL~eIl~e~l 553 (575)
...+. +.+++ +..+. -.-..++-.||..++.++.
T Consensus 366 l~~~~--------l~~dvdl~~LA--~~T~GfSGADI~~l~~eA~ 400 (437)
T 4b4t_I 366 TSKMN--------LSEDVNLETLV--TTKDDLSGADIQAMCTEAG 400 (437)
T ss_dssp HTTSC--------BCSCCCHHHHH--HHCCSCCHHHHHHHHHHHH
T ss_pred hcCCC--------CCCcCCHHHHH--HhCCCCCHHHHHHHHHHHH
Confidence 33222 11111 11111 0124578888888887654
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.3e-22 Score=217.66 Aligned_cols=174 Identities=21% Similarity=0.290 Sum_probs=139.3
Q ss_pred hhcccccChHHHHHHHHHHHHhhh--hhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHY--MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLA 351 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~--~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA 351 (575)
.+++ |.|++++|+.|.+.|..+. ...+.....+ +++++||+||||||||++|+++|
T Consensus 207 t~~D-IgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~---------------------pprGILLyGPPGTGKTlLAkAiA 264 (467)
T 4b4t_H 207 TYSD-VGGCKDQIEKLREVVELPLLSPERFATLGID---------------------PPKGILLYGPPGTGKTLCARAVA 264 (467)
T ss_dssp CCSS-CTTCHHHHHHHHHHTHHHHHCHHHHHHHTCC---------------------CCSEEEECSCTTSSHHHHHHHHH
T ss_pred CHHH-hccHHHHHHHHHHHHHHHhcCHHHHHHCCCC---------------------CCCceEeeCCCCCcHHHHHHHHH
Confidence 3444 8999999999999987433 3344433322 24799999999999999999999
Q ss_pred HHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHH
Q 008176 352 RYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (575)
Q Consensus 352 ~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~ 431 (575)
+.++.+|+.++++++. ..|+|++ ++.++.+|..+.. ..||||||||+|.+...|...+.+.+....++.+.||.
T Consensus 265 ~e~~~~fi~vs~s~L~-sk~vGes-ek~ir~lF~~Ar~----~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~ 338 (467)
T 4b4t_H 265 NRTDATFIRVIGSELV-QKYVGEG-ARMVRELFEMART----KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELIT 338 (467)
T ss_dssp HHHTCEEEEEEGGGGC-CCSSSHH-HHHHHHHHHHHHH----TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHH
T ss_pred hccCCCeEEEEhHHhh-cccCCHH-HHHHHHHHHHHHh----cCCceEeecccccccccccCcCCCccHHHHHHHHHHHH
Confidence 9999999999999998 5799998 8889999988763 57999999999999998876555555555567788888
Q ss_pred HhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHh-hhcccCCCCCCchhhh
Q 008176 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (575)
Q Consensus 432 ~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~-rr~~~~IgF~~p~~e~ 494 (575)
.|||. -...++++|+|||.++ ++.++.+ +||+..|.|+.|+.+.
T Consensus 339 ~lDg~-------------------~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~ 384 (467)
T 4b4t_H 339 QLDGF-------------------DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEG 384 (467)
T ss_dssp HHHSS-------------------CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHH
T ss_pred Hhhcc-------------------CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHH
Confidence 88852 1245688899999887 7777653 5999999999998876
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.5e-22 Score=218.54 Aligned_cols=174 Identities=24% Similarity=0.364 Sum_probs=139.5
Q ss_pred hhcccccChHHHHHHHHHHHHhhhh--hHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLA 351 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA 351 (575)
.+++ |.|++++|+.|.++|..+.+ .++.....+ +++++||+||||||||++|+++|
T Consensus 179 ~~~d-igGl~~~k~~l~e~v~~pl~~p~~f~~~g~~---------------------~prGvLL~GPPGtGKTllAkAiA 236 (437)
T 4b4t_L 179 TFDG-IGGLTEQIRELREVIELPLKNPEIFQRVGIK---------------------PPKGVLLYGPPGTGKTLLAKAVA 236 (437)
T ss_dssp CSGG-GCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---------------------CCCEEEEESCTTSSHHHHHHHHH
T ss_pred ChhH-hCChHHHHHHHHHHHHHHHhCHHHHHhCCCC---------------------CCCeEEEECCCCCcHHHHHHHHH
Confidence 3444 89999999999999975433 344443332 24799999999999999999999
Q ss_pred HHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHH
Q 008176 352 RYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (575)
Q Consensus 352 ~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~ 431 (575)
+.++.+|+.++++++. ..|+|++ +..++.+|..+.. ..||||||||+|.+..+|...+.+.+....++.+.||.
T Consensus 237 ~e~~~~~~~v~~s~l~-sk~~Ges-e~~ir~~F~~A~~----~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~ 310 (437)
T 4b4t_L 237 ATIGANFIFSPASGIV-DKYIGES-ARIIREMFAYAKE----HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLT 310 (437)
T ss_dssp HHHTCEEEEEEGGGTC-CSSSSHH-HHHHHHHHHHHHH----SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHH
T ss_pred HHhCCCEEEEehhhhc-cccchHH-HHHHHHHHHHHHh----cCCceeeeecccccccccccCCCCcchHHHHHHHHHHH
Confidence 9999999999999988 5799998 7888999988763 58999999999999998866555555555567889999
Q ss_pred HhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHh-hhcccCCCCCCchhhh
Q 008176 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (575)
Q Consensus 432 ~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~-rr~~~~IgF~~p~~e~ 494 (575)
.|||.. ...++++|+|||.++ +|.++.+ +||+..|.|+.|+.+.
T Consensus 311 ~lDg~~-------------------~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~ 356 (437)
T 4b4t_L 311 QMDGFD-------------------NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAG 356 (437)
T ss_dssp HHHSSS-------------------CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHH
T ss_pred Hhhccc-------------------CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHH
Confidence 999621 234578888888887 7776654 5899999999998875
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=4.5e-22 Score=214.30 Aligned_cols=216 Identities=21% Similarity=0.344 Sum_probs=158.8
Q ss_pred hhcccccChHHHHHHHHHHHHhhhh--hHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLA 351 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA 351 (575)
.++ +|.|++++|+.|.+.+..+.+ ..+.....+ +++++||+||||||||++|+++|
T Consensus 170 ~~~-digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~---------------------~prGiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 170 TYA-DVGGLDMQKQEIREAVELPLVQADLYEQIGID---------------------PPRGVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp CGG-GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---------------------CCCEEEEESCTTTTHHHHHHHHH
T ss_pred CHH-HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCC---------------------CCceEEEECCCCCCHHHHHHHHH
Confidence 344 489999999999999975433 344443332 24789999999999999999999
Q ss_pred HHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHH
Q 008176 352 RYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (575)
Q Consensus 352 ~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~ 431 (575)
+.++.+|+.++++++. ..|+|++ +..++.+|..+.. ..||||||||+|.+...|.....+.+....++.+.||.
T Consensus 228 ~~~~~~~~~v~~~~l~-~~~~Ge~-e~~ir~lF~~A~~----~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~ 301 (428)
T 4b4t_K 228 NSTKAAFIRVNGSEFV-HKYLGEG-PRMVRDVFRLARE----NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLT 301 (428)
T ss_dssp HHHTCEEEEEEGGGTC-CSSCSHH-HHHHHHHHHHHHH----TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHH
T ss_pred HHhCCCeEEEecchhh-ccccchh-HHHHHHHHHHHHH----cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHH
Confidence 9999999999999988 5799998 7889999988763 57999999999999998876665566556678999999
Q ss_pred HhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHh-hhcccCCCCC-CchhhhhccCCCChHHHHHH
Q 008176 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFG-APVRANMRAGGVTDAVVTSS 508 (575)
Q Consensus 432 ~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~-rr~~~~IgF~-~p~~e~~~~~~l~~~~~~~~ 508 (575)
.|||. -...++++|+|||.++ +|.++.+ +||+..|.|+ .|+.+. +..+...
T Consensus 302 ~ldg~-------------------~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~-------R~~Il~~ 355 (428)
T 4b4t_K 302 QMDGF-------------------DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRE-------RRLIFGT 355 (428)
T ss_dssp HHHHS-------------------CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHH-------HHHHHHH
T ss_pred HhhCC-------------------CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHH-------HHHHHHH
Confidence 99962 1345688899999887 7777664 5999999996 787765 2233333
Q ss_pred HHhhhcchhhhhcCCCCcc-ccccceEEEcCCCCHHHHHHHHhhhH
Q 008176 509 LMETVESSDLIAYGLIPEF-VGRFPVLVSLLALTENQLVQVLTEPK 553 (575)
Q Consensus 509 ll~~l~~~dl~~~gl~Pef-i~Rf~~ii~~~~LsedeL~eIl~e~l 553 (575)
+...+. +.++. +..+. -.-..++-.||..++.++.
T Consensus 356 ~~~~~~--------l~~~~dl~~lA--~~t~G~sgadi~~l~~eA~ 391 (428)
T 4b4t_K 356 IASKMS--------LAPEADLDSLI--IRNDSLSGAVIAAIMQEAG 391 (428)
T ss_dssp HHHSSC--------BCTTCCHHHHH--HHTTTCCHHHHHHHHHHHH
T ss_pred HhcCCC--------CCcccCHHHHH--HHCCCCCHHHHHHHHHHHH
Confidence 333222 11211 11111 1124688888888887654
No 9
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3e-22 Score=215.92 Aligned_cols=217 Identities=22% Similarity=0.293 Sum_probs=158.0
Q ss_pred hhcccccChHHHHHHHHHHHHhhhh--hHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLA 351 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA 351 (575)
.+++ |.|.+++|+.|.+.|..+.+ ..+.....+ +++++||+||||||||++|+++|
T Consensus 179 t~~d-igGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---------------------~prGvLLyGPPGTGKTllAkAiA 236 (434)
T 4b4t_M 179 TYSD-VGGLDKQIEELVEAIVLPMKRADKFKDMGIR---------------------APKGALMYGPPGTGKTLLARACA 236 (434)
T ss_dssp CGGG-SCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---------------------CCCEEEEESCTTSSHHHHHHHHH
T ss_pred ChHh-cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---------------------CCCeeEEECcCCCCHHHHHHHHH
Confidence 3554 89999999999999875443 344433322 24799999999999999999999
Q ss_pred HHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHH
Q 008176 352 RYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (575)
Q Consensus 352 ~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~ 431 (575)
+.++.+|+.++++++. ..|+|++ ++.++.+|..+.. ..||||||||+|.+...|.....+++....++.+.||.
T Consensus 237 ~e~~~~f~~v~~s~l~-~~~vGes-e~~ir~lF~~A~~----~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~ 310 (434)
T 4b4t_M 237 AQTNATFLKLAAPQLV-QMYIGEG-AKLVRDAFALAKE----KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLN 310 (434)
T ss_dssp HHHTCEEEEEEGGGGC-SSCSSHH-HHHHHHHHHHHHH----HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHH
T ss_pred HHhCCCEEEEehhhhh-hcccchH-HHHHHHHHHHHHh----cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHH
Confidence 9999999999999998 6799998 7889999988763 57999999999999998866554444444557788999
Q ss_pred HhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHH-HhhhcccCCCCCCchhhhhccCCCChHHHHHHH
Q 008176 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTI-SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (575)
Q Consensus 432 ~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i-~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~l 509 (575)
.|||.. ...++++|+|||.++ +|.++ +.+||+..|.|+.|+.+. +.++...+
T Consensus 311 ~ldg~~-------------------~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~-------R~~Il~~~ 364 (434)
T 4b4t_M 311 QLDGFS-------------------SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDS-------RAQILQIH 364 (434)
T ss_dssp HHTTSC-------------------SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHH-------HHHHHHHH
T ss_pred HhhccC-------------------CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHH-------HHHHHHHH
Confidence 998621 234578888999887 66655 456999999999998876 23344433
Q ss_pred HhhhcchhhhhcCCCCcc-ccccceEEEcCCCCHHHHHHHHhhhHH
Q 008176 510 METVESSDLIAYGLIPEF-VGRFPVLVSLLALTENQLVQVLTEPKN 554 (575)
Q Consensus 510 l~~l~~~dl~~~gl~Pef-i~Rf~~ii~~~~LsedeL~eIl~e~l~ 554 (575)
...+.. .+++ +..+. -....++-.||..++.++..
T Consensus 365 ~~~~~~--------~~dvdl~~lA--~~t~G~sGADi~~l~~eA~~ 400 (434)
T 4b4t_M 365 SRKMTT--------DDDINWQELA--RSTDEFNGAQLKAVTVEAGM 400 (434)
T ss_dssp HHHSCB--------CSCCCHHHHH--HHCSSCCHHHHHHHHHHHHH
T ss_pred hcCCCC--------CCcCCHHHHH--HhCCCCCHHHHHHHHHHHHH
Confidence 333321 1111 11111 01246888899988886543
No 10
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.86 E-value=4.5e-21 Score=192.89 Aligned_cols=232 Identities=42% Similarity=0.702 Sum_probs=171.4
Q ss_pred CChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHH
Q 008176 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (575)
Q Consensus 266 ~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTt 345 (575)
.+|+++.+.|++.|+||+++++.+..++..++.+........ ....+.++||+||||||||+
T Consensus 4 ~~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~------------------~~~~~~~vll~G~~GtGKT~ 65 (310)
T 1ofh_A 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLR------------------HEVTPKNILMIGPTGVGKTE 65 (310)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHH------------------HHCCCCCEEEECCTTSSHHH
T ss_pred CCHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhccccc------------------ccCCCceEEEECCCCCCHHH
Confidence 589999999999999999999999999976544311110000 00123689999999999999
Q ss_pred HHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHh-hccCeEeehhHhhhhHhhhhcccCCCcchHH
Q 008176 346 LAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAA-AQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (575)
Q Consensus 346 LAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~-~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~ 424 (575)
+|+++|+.++.+++.++++++...+|+|.+....+.+++..+...+.. ..++||||||+|.+..+.. +.+.+..++.
T Consensus 66 la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~--~~~~~~~~~~ 143 (310)
T 1ofh_A 66 IARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGE--YSGADVSREG 143 (310)
T ss_dssp HHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSS--CCSSHHHHHH
T ss_pred HHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccc--ccccchhHHH
Confidence 999999999999999999998766788876566677776654332322 3579999999999987642 2234445556
Q ss_pred HHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhhccCCCChHH
Q 008176 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (575)
Q Consensus 425 vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~ 504 (575)
+++.|+++||+..+... .-.....++++|++++.... .+
T Consensus 144 ~~~~Ll~~le~~~~~~~-----------~~~~~~~~~~~i~~~~~~~~----------------~~-------------- 182 (310)
T 1ofh_A 144 VQRDLLPLVEGSTVSTK-----------HGMVKTDHILFIASGAFQVA----------------RP-------------- 182 (310)
T ss_dssp HHHHHHHHHHCCEEEET-----------TEEEECTTCEEEEEECCSSS----------------CG--------------
T ss_pred HHHHHHHHhcCCeEecc-----------cccccCCcEEEEEcCCcccC----------------Cc--------------
Confidence 79999999997544320 01345677888988764210 00
Q ss_pred HHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHhhCCCeEEeC
Q 008176 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVSASVS 574 (575)
Q Consensus 505 ~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~~~~~~~~~~i~l~~~ 574 (575)
. .+.|++++||+..+.+.+++++++.+|+....+.+.++|.+.+...++.+.++
T Consensus 183 -----------~-----~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (310)
T 1ofh_A 183 -----------S-----DLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFT 236 (310)
T ss_dssp -----------G-----GSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEEC
T ss_pred -----------c-----cCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccC
Confidence 0 15688999999889999999999999998766677788888888888877765
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.82 E-value=9.9e-21 Score=217.35 Aligned_cols=221 Identities=19% Similarity=0.242 Sum_probs=137.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|.|++++|+.|.+++....++ ++.+....+. ++.++||+||||||||++|+++|.+++.+
T Consensus 478 diggl~~~k~~l~e~v~~p~~~------------------p~~f~~~g~~-~~~gvLl~GPPGtGKT~lAkaiA~e~~~~ 538 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEH------------------PDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTC------------------SGGGSSSCCC-CCSCCEEESSTTSSHHHHHHHHHHTTTCE
T ss_pred HhCCHHHHHHHHHHHHHhhhhC------------------HHHHHhcCCC-CCceEEEecCCCCCchHHHHHHHHHhCCc
Confidence 4799999999999998633221 1111111222 24689999999999999999999999999
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCe
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~ 437 (575)
|+.++++++. +.|+|++ ++.++++|..|+. ..||||||||||.+...|.....+.+...+++.++||..|||..
T Consensus 539 f~~v~~~~l~-s~~vGes-e~~vr~lF~~Ar~----~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 539 FISIKGPELL-TMWFGES-EANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp EEECCHHHHH-TTTCSSC-HHHHHHHHHHHHT----TCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred eEEeccchhh-ccccchH-HHHHHHHHHHHHH----cCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 9999999988 6799998 8899999998863 57999999999999998865433333334459999999999621
Q ss_pred ecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHh-hhcccCCCCCCchhhhhccCCCChHHHHHHHHhhhcc
Q 008176 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (575)
Q Consensus 438 v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~-rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l~~ 515 (575)
...++++|++||.++ |+.++.+ +||+..|.++.|+.+. ..++++.+..
T Consensus 613 -------------------~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~-----------R~~il~~~l~ 662 (806)
T 3cf2_A 613 -------------------TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS-----------RVAILKANLR 662 (806)
T ss_dssp -------------------SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CH-----------HHHTTTTTSS
T ss_pred -------------------CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHH-----------HHHHHHHHhc
Confidence 234688999999998 6766653 5999999999998775 2233332221
Q ss_pred hhhhhcCCCCcc-ccccceEEEcCCCCHHHHHHHHhhhHHHHHHH
Q 008176 516 SDLIAYGLIPEF-VGRFPVLVSLLALTENQLVQVLTEPKNALGKQ 559 (575)
Q Consensus 516 ~dl~~~gl~Pef-i~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~ 559 (575)
. ..+.++. +..+.. ..+.+|-.||..++.++...-+++
T Consensus 663 ~----~~~~~~~dl~~la~--~t~g~SGadi~~l~~~A~~~a~r~ 701 (806)
T 3cf2_A 663 K----SPVAKDVDLEFLAK--MTNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp C----C--CCC------------------CHHHHHHHHHHHHHHH
T ss_pred C----CCCCCCCCHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1 1111111 222211 234588888998888766444443
No 12
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.79 E-value=8.6e-19 Score=199.85 Aligned_cols=224 Identities=22% Similarity=0.342 Sum_probs=151.7
Q ss_pred hHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHH
Q 008176 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (575)
Q Consensus 268 ~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLA 347 (575)
...+++.|.+.|+||+++++.+..++..... |...+. .+.+++||+||||||||++|
T Consensus 449 l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~------------g~~~~~-----------~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 449 LKNLGDRLKMLVFGQDKAIEALTEAIKMARA------------GLGHEH-----------KPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp HHHHHHHHTTTSCSCHHHHHHHHHHHHHHHT------------TCSCTT-----------SCSEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHhc------------ccCCCC-----------CCceEEEEECCCCCcHHHHH
Confidence 4567888999999999999999988852211 111111 12358999999999999999
Q ss_pred HHHHHHhCCCEEEeccccccc-----------cccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhccc
Q 008176 348 KTLARYVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (575)
Q Consensus 348 raLA~~l~~~fv~v~~s~l~~-----------sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~ 416 (575)
+++|+.++.+++.++|+++.+ .+|+|.+....+.+.+. ...++|||||||++++++
T Consensus 506 ~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~-------~~~~~vl~lDEi~~~~~~------ 572 (758)
T 1r6b_X 506 VQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVI-------KHPHAVLLLDEIEKAHPD------ 572 (758)
T ss_dssp HHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHH-------HCSSEEEEEETGGGSCHH------
T ss_pred HHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHH-------hCCCcEEEEeCccccCHH------
Confidence 999999999999999998653 24666543333433332 245789999999999877
Q ss_pred CCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhhc
Q 008176 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (575)
Q Consensus 417 ~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~~ 496 (575)
+++.|+++||++.+.. .....++..|+++|+|+|... +... +..+||.....+
T Consensus 573 --------~~~~Ll~~le~~~~~~----------~~g~~~~~~~~~iI~tsN~~~-~~~~-----~~~~g~~~~~~~--- 625 (758)
T 1r6b_X 573 --------VFNILLQVMDNGTLTD----------NNGRKADFRNVVLVMTTNAGV-RETE-----RKSIGLIHQDNS--- 625 (758)
T ss_dssp --------HHHHHHHHHHHSEEEE----------TTTEEEECTTEEEEEEECSSC-C-----------------------
T ss_pred --------HHHHHHHHhcCcEEEc----------CCCCEEecCCeEEEEecCcch-hhhh-----hcccCccccchH---
Confidence 9999999999654432 112456778999999999643 1111 123444322110
Q ss_pred cCCCChHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHhhCCCeEEeC
Q 008176 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVSASVS 574 (575)
Q Consensus 497 ~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~~~~~~~~~~i~l~~~ 574 (575)
..+.+.+. ..+.|+|++||+.++.|.+++++++.+|+.. .++++.+.+...++.+.++
T Consensus 626 ----------~~~~~~~~------~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~----~l~~~~~~~~~~~~~~~~~ 683 (758)
T 1r6b_X 626 ----------TDAMEEIK------KIFTPEFRNRLDNIIWFDHLSTDVIHQVVDK----FIVELQVQLDQKGVSLEVS 683 (758)
T ss_dssp ------------CHHHHH------HHSCHHHHTTCSEEEECCCCCHHHHHHHHHH----HHHHHHHHHHHTTEEEEEC
T ss_pred ----------HHHHHHHH------HhcCHHHHhhCCcceeeCCCCHHHHHHHHHH----HHHHHHHHHHHCCcEEEeC
Confidence 11111111 1378999999999999999999999999984 4455566667778777765
No 13
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.78 E-value=3.6e-18 Score=172.59 Aligned_cols=225 Identities=23% Similarity=0.302 Sum_probs=145.4
Q ss_pred hHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHH
Q 008176 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (575)
Q Consensus 268 ~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLA 347 (575)
..++++.|.+.++||+.+++.+...+......+. .+. .+..++||+||||||||++|
T Consensus 8 l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~------------~~~-----------~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 8 LLRLEEELHKRVVGQDEAIRAVADAIRRARAGLK------------DPN-----------RPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp HHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCS------------CTT-----------SCSEEEEEESCSSSSHHHHH
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC------------CCC-----------CCceEEEEECCCCcCHHHHH
Confidence 4567888999999999999999999863222110 000 12257999999999999999
Q ss_pred HHHHHHh---CCCEEEecccccccc-----------ccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 348 KTLARYV---NVPFVIADATTLTQA-----------GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 348 raLA~~l---~~~fv~v~~s~l~~s-----------g~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
+++|+.+ +.+++.++|+.+... ++.|......+...+ ....++||||||+|.+...
T Consensus 65 ~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-------~~~~~~vl~lDEi~~l~~~--- 134 (311)
T 4fcw_A 65 KTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAV-------RRRPYSVILFDAIEKAHPD--- 134 (311)
T ss_dssp HHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHH-------HHCSSEEEEEETGGGSCHH---
T ss_pred HHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHH-------HhCCCeEEEEeChhhcCHH---
Confidence 9999988 567999999876531 111221111222221 2235689999999999876
Q ss_pred cccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhh
Q 008176 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e 493 (575)
+|+.|+++|++..+.. .....++..++++|+|+|... +.+...... ...
T Consensus 135 -----------~~~~Ll~~le~~~~~~----------~~~~~~~~~~~iiI~ttn~~~--~~i~~~~~~----~~~---- 183 (311)
T 4fcw_A 135 -----------VFNILLQMLDDGRLTD----------SHGRTVDFRNTVIIMTSNLGS--PLILEGLQK----GWP---- 183 (311)
T ss_dssp -----------HHHHHHHHHHHSEEEC----------TTSCEEECTTEEEEEEESTTH--HHHHTTTTS----CCC----
T ss_pred -----------HHHHHHHHHhcCEEEc----------CCCCEEECCCcEEEEecccCH--HHHHhhhcc----ccc----
Confidence 9999999999654431 112356778899999998631 111110000 000
Q ss_pred hhccCCCChHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHhhCCCeEEe
Q 008176 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVSASV 573 (575)
Q Consensus 494 ~~~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~~~~~~~~~~i~l~~ 573 (575)
.....+.+.+.+ ...+.|+|++||+.++.+.+++.+++.+|+.. .++++.+.+..+++.+.+
T Consensus 184 --------~~~l~~~~~~~~------~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~----~l~~~~~~~~~~~~~~~~ 245 (311)
T 4fcw_A 184 --------YERIRDEVFKVL------QQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEI----QMSYLRARLAEKRISLEL 245 (311)
T ss_dssp --------SSTHHHHTHHHH------HHHSCHHHHTTCSEEEECCCCCHHHHHHHHHH----HTHHHHHHHHTTTCEEEE
T ss_pred --------HHHHHHHHHHHH------HHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHH----HHHHHHHHHHhCCcEEEe
Confidence 001111111111 12378999999999999999999999999984 444555556656777766
Q ss_pred C
Q 008176 574 S 574 (575)
Q Consensus 574 ~ 574 (575)
+
T Consensus 246 ~ 246 (311)
T 4fcw_A 246 T 246 (311)
T ss_dssp C
T ss_pred C
Confidence 5
No 14
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.78 E-value=2.3e-19 Score=206.11 Aligned_cols=220 Identities=19% Similarity=0.261 Sum_probs=154.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|.|.+++|+.|.+.+..+.++ ++.++...+. +++++||+||||||||+||+++|+.++.+
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~------------------p~~f~~~g~~-~p~GILL~GPPGTGKT~LAraiA~elg~~ 265 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRH------------------PALFKAIGVK-PPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHC------------------CGGGTSCCCC-CCCEEEEECCTTSCHHHHHHHHHTTTTCE
T ss_pred hhcCHHHHHHHHHHHHHHHccC------------------HHHHhhcCCC-CCCeEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4899999999999998743331 1112222222 24789999999999999999999999999
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCe
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~ 437 (575)
++.++++++. ..|+|+. +..++.+|..+.. ..|+||||||||.+.++|+.. .+...+++.++|+..|+|.
T Consensus 266 ~~~v~~~~l~-sk~~ges-e~~lr~lF~~A~~----~~PsIIfIDEiDal~~~r~~~---~~~~~~riv~~LL~~mdg~- 335 (806)
T 3cf2_A 266 FFLINGPEIM-SKLAGES-ESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGL- 335 (806)
T ss_dssp EEEEEHHHHH-SSCTTHH-HHHHHHHHHHHTT----SCSEEEEEESGGGTCCTTTTC---CCTTHHHHHHHHHTHHHHC-
T ss_pred EEEEEhHHhh-cccchHH-HHHHHHHHHHHHH----cCCeEEEEehhcccccccCCC---CChHHHHHHHHHHHHHhcc-
Confidence 9999999988 5699987 8889999988763 579999999999999887643 2233456899999999952
Q ss_pred ecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHh-hhcccCCCCCCchhhhhccCCCChHHHHHHHHhhhcc
Q 008176 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (575)
Q Consensus 438 v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~-rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l~~ 515 (575)
....++++|+++|.++ ++.++++ +||+..|.++.|+.+. ..++++.+..
T Consensus 336 ------------------~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~-----------R~~IL~~~l~ 386 (806)
T 3cf2_A 336 ------------------KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG-----------RLEILQIHTK 386 (806)
T ss_dssp ------------------CGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHH-----------HHHHHHHTCS
T ss_pred ------------------cccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHH-----------HHHHHHHHhc
Confidence 1234588888888876 6666654 3899999999998776 2333333322
Q ss_pred hhhhhcCCCCcc-ccccceEEEcCCCCHHHHHHHHhhhHHHHHHHHH
Q 008176 516 SDLIAYGLIPEF-VGRFPVLVSLLALTENQLVQVLTEPKNALGKQYR 561 (575)
Q Consensus 516 ~dl~~~gl~Pef-i~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~~~ 561 (575)
..- +.++. +..+ .-....++-.||..++.++...-+++..
T Consensus 387 ~~~----~~~dvdl~~l--A~~T~GfsgaDL~~Lv~eA~~~A~~r~~ 427 (806)
T 3cf2_A 387 NMK----LADDVDLEQV--ANETHGHVGADLAALCSEAALQAIRKKM 427 (806)
T ss_dssp SSE----ECTTCCHHHH--HHHCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC----CCcccCHHHH--HHhcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 100 01110 1111 1123568888898888876544444433
No 15
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=172.56 Aligned_cols=217 Identities=20% Similarity=0.300 Sum_probs=146.1
Q ss_pred cccChHHHHHHHHHHHHhhhhh--HhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh-
Q 008176 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r--~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l- 354 (575)
+|+|++++|+.|.+.+..+.+. ++... ..+++++||+||||||||++|+++|+.+
T Consensus 13 di~G~~~~k~~l~~~v~~p~~~~~~~~~~----------------------~~~~~~iLL~GppGtGKT~la~ala~~~~ 70 (322)
T 1xwi_A 13 DVAGLEGAKEALKEAVILPIKFPHLFTGK----------------------RTPWRGILLFGPPGTGKSYLAKAVATEAN 70 (322)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCGGGSCTT----------------------CCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHHHHHhCHHHHhCC----------------------CCCCceEEEECCCCccHHHHHHHHHHHcC
Confidence 3899999999999999744331 11110 1134789999999999999999999999
Q ss_pred CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 355 ~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
+.+++.++++++. ..|+|+. +..++.+|..+. ...++||||||+|.+...+... .....+++++.|+..|+
T Consensus 71 ~~~~~~i~~~~l~-~~~~g~~-~~~~~~lf~~a~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld 141 (322)
T 1xwi_A 71 NSTFFSISSSDLV-SKWLGES-EKLVKNLFQLAR----ENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQ 141 (322)
T ss_dssp SCEEEEEECCSSC-CSSCCSC-HHHHHHHHHHHH----HTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHH
T ss_pred CCcEEEEEhHHHH-hhhhhHH-HHHHHHHHHHHH----hcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHh
Confidence 8899999999987 4688886 677788887654 2568999999999998765432 22233458899999999
Q ss_pred CCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhh
Q 008176 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (575)
Q Consensus 435 g~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l 513 (575)
+.. ....++++|+++|.++ ++.++.+ |++..+.++.|+.+. +.++...++...
T Consensus 142 ~~~------------------~~~~~v~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~~-------r~~il~~~l~~~ 195 (322)
T 1xwi_A 142 GVG------------------VDNDGILVLGATNIPWVLDSAIRR-RFEKRIYIPLPEPHA-------RAAMFKLHLGTT 195 (322)
T ss_dssp CSS------------------SCCTTEEEEEEESCTTTSCHHHHH-TCCEEEECCCCCHHH-------HHHHHHHHHTTC
T ss_pred ccc------------------ccCCCEEEEEecCCcccCCHHHHh-hcCeEEEeCCcCHHH-------HHHHHHHHHhcC
Confidence 521 1235688888888876 6666655 788889999998765 122222222211
Q ss_pred cchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHHHHHH
Q 008176 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQ 559 (575)
Q Consensus 514 ~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~ 559 (575)
.. .+.+..+..+.. ....++-.++..++.++...-+++
T Consensus 196 ~~------~l~~~~l~~la~--~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 196 QN------SLTEADFRELGR--KTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp CB------CCCHHHHHHHHH--TCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred CC------CCCHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHH
Confidence 10 011112222111 124688888988888765444443
No 16
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.74 E-value=8.3e-18 Score=173.18 Aligned_cols=171 Identities=26% Similarity=0.363 Sum_probs=124.4
Q ss_pred hcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 275 Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
+++ |+|++++|+.|.+++..+.... .. +.. ...++.++||+||||||||++|+++|+.+
T Consensus 17 ~~d-i~G~~~~~~~l~~~i~~~~~~~--~~----------------~~~--~~~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 17 WED-VAGLEGAKEALKEAVILPVKFP--HL----------------FKG--NRKPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp GGG-SCSCHHHHHHHHHHTHHHHHCG--GG----------------CCT--TCCCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHH-hcChHHHHHHHHHHHHHHHhCH--HH----------------Hhc--CCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 444 8999999999999986433210 00 000 00124689999999999999999999999
Q ss_pred CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 355 ~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
+.+++.++++++. ..|+|+. ...++.+|..+.. ..++||||||||.+...+... .....+++++.|+..|+
T Consensus 76 ~~~~~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~ 146 (322)
T 3eie_A 76 NSTFFSVSSSDLV-SKWMGES-EKLVKQLFAMARE----NKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMN 146 (322)
T ss_dssp TCEEEEEEHHHHH-TTTGGGH-HHHHHHHHHHHHH----TSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHG
T ss_pred CCCEEEEchHHHh-hcccchH-HHHHHHHHHHHHh----cCCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhc
Confidence 9999999999887 4588876 6777888776542 467999999999998875432 22234558999999998
Q ss_pred CCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHhhhcccCCCCCCchhhh
Q 008176 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 435 g~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~rr~~~~IgF~~p~~e~ 494 (575)
+.. ....++++|+++|.++ ++.++.+ ||+..+.++.|+.+.
T Consensus 147 ~~~------------------~~~~~v~vi~atn~~~~ld~al~~-Rf~~~i~~~~p~~~~ 188 (322)
T 3eie_A 147 GVG------------------NDSQGVLVLGATNIPWQLDSAIRR-RFERRIYIPLPDLAA 188 (322)
T ss_dssp GGG------------------TSCCCEEEEEEESCGGGSCHHHHH-HCCEEEECCCCCHHH
T ss_pred ccc------------------ccCCceEEEEecCChhhCCHHHHc-ccCeEEEeCCCCHHH
Confidence 521 1234588888888775 6667665 888889999998765
No 17
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.74 E-value=1.4e-17 Score=190.25 Aligned_cols=208 Identities=21% Similarity=0.303 Sum_probs=140.8
Q ss_pred hHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHH
Q 008176 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (575)
Q Consensus 268 ~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLA 347 (575)
...+...|.+.|+||+++++.+..++..... +...+. .+.+++||+||||||||++|
T Consensus 482 l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~------------~~~~~~-----------~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 482 LLNMENILHSRVIGQDEAVVAVAKAVRRARA------------GLKDPK-----------RPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp C-CHHHHHHTTSCSCHHHHHHHHHHHHHHTT------------TCSCTT-----------SCSEEEEEESCTTSSHHHHH
T ss_pred HHHHHHHHhCcCcChHHHHHHHHHHHHHHHc------------ccCCCC-----------CCceEEEEECCCCCCHHHHH
Confidence 3457778888999999999999998862211 111111 11247999999999999999
Q ss_pred HHHHHHh---CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHH
Q 008176 348 KTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (575)
Q Consensus 348 raLA~~l---~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~ 424 (575)
+++|+.+ +.+++.++|+++.+. +... ...+.+.+. ...++|||||||+++++.
T Consensus 539 ~ala~~l~~~~~~~i~i~~s~~~~~-~~~~--~~~l~~~~~-------~~~~~vl~lDEi~~~~~~-------------- 594 (758)
T 3pxi_A 539 RALAESIFGDEESMIRIDMSEYMEK-HSTS--GGQLTEKVR-------RKPYSVVLLDAIEKAHPD-------------- 594 (758)
T ss_dssp HHHHHHHHSCTTCEEEEEGGGGCSS-CCCC-----CHHHHH-------HCSSSEEEEECGGGSCHH--------------
T ss_pred HHHHHHhcCCCcceEEEechhcccc-cccc--cchhhHHHH-------hCCCeEEEEeCccccCHH--------------
Confidence 9999987 678999999987743 2221 112222221 245789999999999877
Q ss_pred HHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhhccCCCChHH
Q 008176 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (575)
Q Consensus 425 vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~ 504 (575)
+++.|+++||++.+.. . ....++..|+++|+|+|...-.
T Consensus 595 ~~~~Ll~~le~g~~~~--------~--~g~~~~~~~~~iI~ttn~~~~~------------------------------- 633 (758)
T 3pxi_A 595 VFNILLQVLEDGRLTD--------S--KGRTVDFRNTILIMTSNVGASE------------------------------- 633 (758)
T ss_dssp HHHHHHHHHHHSBCC---------------CCBCTTCEEEEEESSSTTC-------------------------------
T ss_pred HHHHHHHHhccCeEEc--------C--CCCEeccCCeEEEEeCCCChhh-------------------------------
Confidence 9999999999544332 1 1124567889999999853210
Q ss_pred HHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHhhCCCeEEeC
Q 008176 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVSASVS 574 (575)
Q Consensus 505 ~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~~~~~~~~~~i~l~~~ 574 (575)
...+.+.+ +..|.|+|++|++.++.+.+++++++.+|+... ++.+.+.+..+++.+.++
T Consensus 634 -~~~~~~~~------~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~----l~~~~~~~~~~~~~~~~~ 692 (758)
T 3pxi_A 634 -KDKVMGEL------KRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM----SDQLTKRLKEQDLSIELT 692 (758)
T ss_dssp -CHHHHHHH------HHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH----HHHHHHHHHTTTCEEEEC
T ss_pred -HHHHHHHH------HhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH----HHHHHHHHHhCCCeEEEC
Confidence 00011111 112779999999999999999999999999844 445556666667877765
No 18
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.73 E-value=2.9e-17 Score=167.77 Aligned_cols=215 Identities=19% Similarity=0.248 Sum_probs=143.0
Q ss_pred cccChHHHHHHHHHHHHhhhh--hHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
+|+|++++|+.|.+++..... ..+...... ++.++||+||||||||++|+++|+.++
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~---------------------~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMT---------------------PSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---------------------CCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCC---------------------CCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 389999999999999874322 222211111 236899999999999999999999999
Q ss_pred CCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 356 ~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+++.+++.++. ..|+|+. ...++.+|..+.. ..++||||||+|.+...+............++++.|+..|++
T Consensus 75 ~~~i~v~~~~l~-~~~~g~~-~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~ 148 (301)
T 3cf0_A 75 ANFISIKGPELL-TMWFGES-EANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 148 (301)
T ss_dssp CEEEEECHHHHH-HHHHTTC-TTHHHHHHHHHHH----TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS
T ss_pred CCEEEEEhHHHH-hhhcCch-HHHHHHHHHHHHh----cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhc
Confidence 999999998876 4577776 5666777776542 467999999999999887543222222223488999999995
Q ss_pred CeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHH-hhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhh
Q 008176 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (575)
Q Consensus 436 ~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~-~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l 513 (575)
. ....++++|+++|.++ ++.++. .+|++..+.++.|+.+. ...+++..
T Consensus 149 ~-------------------~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~-----------r~~il~~~ 198 (301)
T 3cf0_A 149 M-------------------STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS-----------RVAILKAN 198 (301)
T ss_dssp S-------------------CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHH-----------HHHHHHHH
T ss_pred c-------------------cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHH-----------HHHHHHHH
Confidence 1 1234688899998876 555443 34888899999998765 12222222
Q ss_pred cchhhhhcCCCCcc-ccccceEEEcCCCCHHHHHHHHhhhHHH
Q 008176 514 ESSDLIAYGLIPEF-VGRFPVLVSLLALTENQLVQVLTEPKNA 555 (575)
Q Consensus 514 ~~~dl~~~gl~Pef-i~Rf~~ii~~~~LsedeL~eIl~e~l~~ 555 (575)
.. +.++.++. +..+.. ....++-.||..++.++...
T Consensus 199 l~----~~~~~~~~~~~~la~--~~~g~sg~dl~~l~~~a~~~ 235 (301)
T 3cf0_A 199 LR----KSPVAKDVDLEFLAK--MTNGFSGADLTEICQRACKL 235 (301)
T ss_dssp HT----TSCBCSSCCHHHHHH--TCSSCCHHHHHHHHHHHHHH
T ss_pred Hc----cCCCCccchHHHHHH--HcCCCCHHHHHHHHHHHHHH
Confidence 11 11122221 222221 23457888998888765543
No 19
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.71 E-value=9.1e-17 Score=162.40 Aligned_cols=138 Identities=22% Similarity=0.314 Sum_probs=96.5
Q ss_pred CChHHHHhhhcccccChHHHHHHHHHHHHhhhhh-HhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChH
Q 008176 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMR-IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (575)
Q Consensus 266 ~t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r-~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKT 344 (575)
...+++...|++.|+|++++|+.|.+.+...... ..... |. .......++||+||||||||
T Consensus 20 ~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~------g~------------~~~~~~~~vll~G~~GtGKT 81 (309)
T 3syl_A 20 SGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKL------GL------------AHETPTLHMSFTGNPGTGKT 81 (309)
T ss_dssp TTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH------TC------------CSSCCCCEEEEEECTTSSHH
T ss_pred ccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHc------CC------------CCCCCCceEEEECCCCCCHH
Confidence 4567788899977999999999999888633211 11111 10 00112368999999999999
Q ss_pred HHHHHHHHHh-------CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccC
Q 008176 345 LLAKTLARYV-------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (575)
Q Consensus 345 tLAraLA~~l-------~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~ 417 (575)
++|+++|+.+ ..+++.++++++. ..+.|.. ...+...+.. ..++||||||+|.+...+..
T Consensus 82 ~la~~la~~l~~~~~~~~~~~~~~~~~~l~-~~~~g~~-~~~~~~~~~~-------~~~~vl~iDEid~l~~~~~~---- 148 (309)
T 3syl_A 82 TVALKMAGLLHRLGYVRKGHLVSVTRDDLV-GQYIGHT-APKTKEVLKR-------AMGGVLFIDEAYYLYRPDNE---- 148 (309)
T ss_dssp HHHHHHHHHHHHTTSSSSCCEEEECGGGTC-CSSTTCH-HHHHHHHHHH-------HTTSEEEEETGGGSCCCC------
T ss_pred HHHHHHHHHHHhcCCcCCCcEEEEcHHHhh-hhccccc-HHHHHHHHHh-------cCCCEEEEEChhhhccCCCc----
Confidence 9999999887 3489999998886 4577775 4444555443 35789999999999754221
Q ss_pred CCcchHHHHHHHHHHhhC
Q 008176 418 RDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 418 ~~~~~e~vq~aLL~~LEg 435 (575)
+.....+++.|++.|+.
T Consensus 149 -~~~~~~~~~~Ll~~l~~ 165 (309)
T 3syl_A 149 -RDYGQEAIEILLQVMEN 165 (309)
T ss_dssp --CCTHHHHHHHHHHHHH
T ss_pred -ccccHHHHHHHHHHHhc
Confidence 12233489999999993
No 20
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.70 E-value=1.2e-16 Score=185.01 Aligned_cols=222 Identities=23% Similarity=0.328 Sum_probs=144.1
Q ss_pred HHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHH
Q 008176 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (575)
Q Consensus 271 l~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraL 350 (575)
+.+.+.+.|+||+++++.+..++..... |...+. .+.+++||+||||||||++|+++
T Consensus 552 l~~~l~~~viG~~~a~~~l~~~i~~~~~------------g~~~~~-----------~p~~~vLl~Gp~GtGKT~lA~~l 608 (854)
T 1qvr_A 552 LEEELHKRVVGQDEAIRAVADAIRRARA------------GLKDPN-----------RPIGSFLFLGPTGVGKTELAKTL 608 (854)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHHHGG------------GCSCSS-----------SCSEEEEEBSCSSSSHHHHHHHH
T ss_pred HHHHHhcccCCcHHHHHHHHHHHHHHhc------------ccCCCC-----------CCceEEEEECCCCCCHHHHHHHH
Confidence 4556667799999999999998852111 111111 01258999999999999999999
Q ss_pred HHHh---CCCEEEecccccccc-----------ccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhccc
Q 008176 351 ARYV---NVPFVIADATTLTQA-----------GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (575)
Q Consensus 351 A~~l---~~~fv~v~~s~l~~s-----------g~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~ 416 (575)
++.+ +.+++.++|+++... +|+|......+.+.+. ...++|||||||+++.+.
T Consensus 609 a~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~-------~~~~~vl~lDEi~~l~~~------ 675 (854)
T 1qvr_A 609 AATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVR-------RRPYSVILFDEIEKAHPD------ 675 (854)
T ss_dssp HHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHH-------HCSSEEEEESSGGGSCHH------
T ss_pred HHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHH-------hCCCeEEEEecccccCHH------
Confidence 9998 789999999986542 2344432123333222 234689999999999877
Q ss_pred CCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhhc
Q 008176 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (575)
Q Consensus 417 ~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~~ 496 (575)
+++.|+++||.+.+. ......++..|+++|+|+|... ....... +++.
T Consensus 676 --------~~~~Ll~~l~~~~~~----------~~~g~~vd~~~~iiI~tsn~~~-~~~~~~~------~~~~------- 723 (854)
T 1qvr_A 676 --------VFNILLQILDDGRLT----------DSHGRTVDFRNTVIILTSNLGS-PLILEGL------QKGW------- 723 (854)
T ss_dssp --------HHHHHHHHHTTTEEC----------CSSSCCEECTTEEEEEECCTTH-HHHHHHH------HTTC-------
T ss_pred --------HHHHHHHHhccCceE----------CCCCCEeccCCeEEEEecCcCh-HHHhhhc------cccc-------
Confidence 999999999965432 1123467889999999999632 1111100 0000
Q ss_pred cCCCChHHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHhhCCCeEEeC
Q 008176 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQYRKMFQMNGVSASVS 574 (575)
Q Consensus 497 ~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~~~~~~~~~~i~l~~~ 574 (575)
......+.+.+. .+..|.|+|++|++.++.+.+++.+++..|+... ++++.+.+...++.+.|+
T Consensus 724 ----~~~~l~~~v~~~------~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~----l~~~~~~~~~~~~~~~~~ 787 (854)
T 1qvr_A 724 ----PYERIRDEVFKV------LQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQ----LSYLRARLAEKRISLELT 787 (854)
T ss_dssp ----CHHHHHHHHHHH------HHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHH----HHHHHHHHHTTTCEEEEC
T ss_pred ----chHHHHHHHHHH------HHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHH----HHHHHHHHHhCCceEEEC
Confidence 011111222111 2334889999999999999999999999999844 444555566667777765
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.70 E-value=9e-17 Score=168.33 Aligned_cols=170 Identities=26% Similarity=0.404 Sum_probs=119.8
Q ss_pred hhcccccChHHHHHHHHHHHHhhhh--hHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLA 351 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA 351 (575)
.+++ |+|++.+++.|.+++..+.. ..+... ..++.++||+||||||||++|+++|
T Consensus 49 ~~~d-i~G~~~~~~~l~~~v~~~~~~~~~~~~~----------------------~~~~~~iLL~GppGtGKT~la~ala 105 (355)
T 2qp9_X 49 KWED-VAGLEGAKEALKEAVILPVKFPHLFKGN----------------------RKPTSGILLYGPPGTGKSYLAKAVA 105 (355)
T ss_dssp CGGG-SCCGGGHHHHHHHHTHHHHHCGGGGCSS----------------------CCCCCCEEEECSTTSCHHHHHHHHH
T ss_pred CHHH-hCCHHHHHHHHHHHHHHHHhCHHHHhcC----------------------CCCCceEEEECCCCCcHHHHHHHHH
Confidence 4554 89999999999998864322 111110 0123689999999999999999999
Q ss_pred HHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHH
Q 008176 352 RYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (575)
Q Consensus 352 ~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~ 431 (575)
+.++.+++.++++++. ..|+|+. ...++.+|..+. ...++||||||||.+...+... .....+++++.|+.
T Consensus 106 ~~~~~~~~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~ 176 (355)
T 2qp9_X 106 TEANSTFFSVSSSDLV-SKWMGES-EKLVKQLFAMAR----ENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLV 176 (355)
T ss_dssp HHHTCEEEEEEHHHHH-SCC---C-HHHHHHHHHHHH----HTSSEEEEEECGGGGTC---------CTHHHHHHHHHHH
T ss_pred HHhCCCEEEeeHHHHh-hhhcchH-HHHHHHHHHHHH----HcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHH
Confidence 9999999999999877 4578876 667777776653 2468999999999998775432 22233458899999
Q ss_pred HhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHhhhcccCCCCCCchhhh
Q 008176 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 432 ~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~rr~~~~IgF~~p~~e~ 494 (575)
.|++.. ....++++|+++|.++ ++.++.+ |++..+.++.|+.+.
T Consensus 177 ~l~~~~------------------~~~~~v~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~~ 221 (355)
T 2qp9_X 177 QMNGVG------------------NDSQGVLVLGATNIPWQLDSAIRR-RFERRIYIPLPDLAA 221 (355)
T ss_dssp HHHHCC---------------------CCEEEEEEESCGGGSCHHHHH-TCCEEEECCCCCHHH
T ss_pred Hhhccc------------------ccCCCeEEEeecCCcccCCHHHHc-ccCEEEEeCCcCHHH
Confidence 998521 1234588888888776 6666655 788888899888765
No 22
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.69 E-value=8.6e-17 Score=175.43 Aligned_cols=172 Identities=24% Similarity=0.314 Sum_probs=122.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+|++++|+.+.+.+.. ++. +..++.+.+.++ .++||+||||||||++|+++|+.++.+
T Consensus 17 di~G~~~~~~~l~e~v~~-l~~------------------~~~~~~~g~~~p-~gvLL~GppGtGKT~Laraia~~~~~~ 76 (476)
T 2ce7_A 17 DVGGAEEAIEELKEVVEF-LKD------------------PSKFNRIGARMP-KGILLVGPPGTGKTLLARAVAGEANVP 76 (476)
T ss_dssp GCCSCHHHHHHHHHHHHH-HHC------------------THHHHTTTCCCC-SEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred HhCCcHHHHHHHHHHHHH-hhC------------------hHHHhhcCCCCC-CeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 489999999999998752 211 001122222233 569999999999999999999999999
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCe
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~ 437 (575)
|+.++++++.. .++|.. ...++.+|..+.. ..++||||||+|.+..++.....+.+...+++++.|+..|++..
T Consensus 77 f~~is~~~~~~-~~~g~~-~~~~r~lf~~A~~----~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~ 150 (476)
T 2ce7_A 77 FFHISGSDFVE-LFVGVG-AARVRDLFAQAKA----HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD 150 (476)
T ss_dssp EEEEEGGGTTT-CCTTHH-HHHHHHHHHHHHH----TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC
T ss_pred eeeCCHHHHHH-HHhccc-HHHHHHHHHHHHh----cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC
Confidence 99999999874 477776 5667777776642 46899999999999887764444455556678999999998521
Q ss_pred ecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHH-HhhhcccCCCCCCchhhh
Q 008176 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTI-SERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 438 v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i-~~rr~~~~IgF~~p~~e~ 494 (575)
...++++|+++|.++ ++.++ +..||+..|.++.|+.+.
T Consensus 151 -------------------~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~ 190 (476)
T 2ce7_A 151 -------------------SKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLG 190 (476)
T ss_dssp -------------------GGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred -------------------CCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHH
Confidence 123578888888876 55444 345899899999998765
No 23
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=162.24 Aligned_cols=225 Identities=20% Similarity=0.293 Sum_probs=141.1
Q ss_pred hhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
.+++ |.|.+++|+.|.+.+..++.. ++.++++++.++++ ++|+||||||||+|++++|..
T Consensus 8 ~~~d-i~g~~~~~~~l~~~i~~~~~~------------------~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 8 TWAD-IGALEDIREELTMAILAPVRN------------------PDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHS------------------HHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred CHHH-hCCHHHHHHHHHHHHHHHhhC------------------HHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 3444 899999999999988655542 12344455556554 999999999999999999999
Q ss_pred hCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHh
Q 008176 354 VNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (575)
Q Consensus 354 l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~L 433 (575)
++.+++.+++.++. ..++|+. .+.+..+|+.+. ...++++|+||+|.+...+..... . ...++.+.++..|
T Consensus 68 ~~~~~i~i~g~~l~-~~~~~~~-~~~i~~vf~~a~----~~~p~i~~~Deid~~~~~r~~~~~--~-~~~~~~~~~l~~L 138 (274)
T 2x8a_A 68 SGLNFISVKGPELL-NMYVGES-ERAVRQVFQRAK----NSAPCVIFFDEVDALCPRRSDRET--G-ASVRVVNQLLTEM 138 (274)
T ss_dssp TTCEEEEEETTTTC-SSTTHHH-HHHHHHHHHHHH----HTCSEEEEEETCTTTCC------------CTTHHHHHHHHH
T ss_pred cCCCEEEEEcHHHH-hhhhhHH-HHHHHHHHHHHH----hcCCCeEeeehhhhhhcccCCCcc--h-HHHHHHHHHHHhh
Confidence 99999999998876 3467765 566777776643 246889999999998765432111 1 1123788899999
Q ss_pred hCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHh-hhcccCCCCCCchhhhhccCCCChHHHHHHHHh
Q 008176 434 EGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (575)
Q Consensus 434 Eg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~-rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~ 511 (575)
+|.. ....+++++++|.++ +|+++.+ +||+..|.++.|+.+. ..++++
T Consensus 139 sgg~-------------------~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~-----------r~~il~ 188 (274)
T 2x8a_A 139 DGLE-------------------ARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD-----------RLAILK 188 (274)
T ss_dssp HTCC-------------------STTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHH-----------HHHHHH
T ss_pred hccc-------------------ccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHH-----------HHHHHH
Confidence 9531 122356677777776 6666653 4999999999998865 233333
Q ss_pred hhcchhhhhcCCCCcc-ccccceEEEcCCCCHHHHHHHHhhhHHHHHH
Q 008176 512 TVESSDLIAYGLIPEF-VGRFPVLVSLLALTENQLVQVLTEPKNALGK 558 (575)
Q Consensus 512 ~l~~~dl~~~gl~Pef-i~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k 558 (575)
.+.+... ...+..+. +..+.....-+.++-.||..++.++....++
T Consensus 189 ~~~~~~~-~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~ 235 (274)
T 2x8a_A 189 TITKNGT-KPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALR 235 (274)
T ss_dssp HHTTTTB-TTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccc-CCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHH
Confidence 3321100 00000000 1111110012378999999998876644433
No 24
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.67 E-value=1.2e-15 Score=151.00 Aligned_cols=174 Identities=22% Similarity=0.339 Sum_probs=118.9
Q ss_pred hcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 275 Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
+++ |+|++++|+.+.+.+.. ... . ..++...... +.+++|+||||||||++|+++|+.+
T Consensus 11 ~~~-i~G~~~~~~~l~~~~~~-~~~---~---------------~~~~~~~~~~-~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 11 FAD-VAGCDEAKEEVAELVEY-LRE---P---------------SRFQKLGGKI-PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GGG-SCSCHHHHHHTHHHHHH-HHC---G---------------GGC-----CC-CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHH-hcCcHHHHHHHHHHHHH-HhC---H---------------HHHHHcCCCC-CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 444 89999999999987752 110 0 0111112222 2579999999999999999999999
Q ss_pred CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 355 ~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
+.+++.++++++.. .+.|+. ...+...|..+. ...++++||||+|.+...+.....+.....+++++.++..|+
T Consensus 70 ~~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~a~----~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~ 143 (257)
T 1lv7_A 70 KVPFFTISGSDFVE-MFVGVG-ASRVRDMFEQAK----KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD 143 (257)
T ss_dssp TCCEEEECSCSSTT-SCCCCC-HHHHHHHHHHHH----TTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeHHHHHH-Hhhhhh-HHHHHHHHHHHH----HcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhh
Confidence 99999999998763 466765 556667766543 235789999999999876543322333334457888999998
Q ss_pred CCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHH-hhhcccCCCCCCchhhh
Q 008176 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 435 g~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~-~rr~~~~IgF~~p~~e~ 494 (575)
+. ....++++|+++|.++ +++.+. ..||+..+.++.|+.+.
T Consensus 144 ~~-------------------~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~ 186 (257)
T 1lv7_A 144 GF-------------------EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 186 (257)
T ss_dssp TC-------------------CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred Cc-------------------ccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHH
Confidence 41 1234577888888765 555443 34788888888887654
No 25
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.67 E-value=5.7e-16 Score=169.88 Aligned_cols=172 Identities=26% Similarity=0.355 Sum_probs=123.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+|++++|+.+.+.+.. +. .+..++++++.+++ +++|+||||||||+||+++|+.++.+
T Consensus 32 dv~G~~~~k~~l~~lv~~-l~------------------~~~~~~~lg~~ip~-GvLL~GppGtGKTtLaraIa~~~~~~ 91 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEF-LK------------------NPSRFHEMGARIPK-GVLLVGPPGVGKTHLARAVAGEARVP 91 (499)
T ss_dssp SSCSCHHHHHHHHHHHHH-HH------------------CGGGTTTTSCCCCS-EEEEECSSSSSHHHHHHHHHHHTTCC
T ss_pred HcCCcHHHHHHHHHHHHH-hh------------------chhhhhhccCCCCc-eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 489999999999988751 21 11234555666654 59999999999999999999999999
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCe
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~ 437 (575)
++.++++++.. .++|.. ...++.+|+.+.. ..++|+||||||.+...+.....+.+...+++.+.|+..|+|..
T Consensus 92 ~i~i~g~~~~~-~~~g~~-~~~v~~lfq~a~~----~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 92 FITASGSDFVE-MFVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp EEEEEGGGGTS-SCTTHH-HHHHHHHTTTSSS----SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred EEEEehhHHHH-hhhhhH-HHHHHHHHHHHHh----cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 99999998873 466765 5567777776542 35799999999999876542211223333457788888888531
Q ss_pred ecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHH-hhhcccCCCCCCchhhh
Q 008176 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 438 v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~-~rr~~~~IgF~~p~~e~ 494 (575)
....+++++++|.++ +++.+. +.||+..|.++.|+.+.
T Consensus 166 -------------------~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~ 205 (499)
T 2dhr_A 166 -------------------KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 205 (499)
T ss_dssp -------------------SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHH
T ss_pred -------------------cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHH
Confidence 123467788888776 554443 45899999999998765
No 26
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.67 E-value=6.5e-16 Score=154.60 Aligned_cols=168 Identities=27% Similarity=0.400 Sum_probs=114.7
Q ss_pred cccChHHHHHHHHHHHHhhhhh--HhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r--~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
.|+|++++++.|.+.+...... .+..... ..+.++||+||||||||++|+++|+.++
T Consensus 18 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------------~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 18 DIGGLEKQMQEIREVVELPLKHPELFEKVGI---------------------EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHCC---------------------CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC---------------------CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3899999999999988643221 1111110 1236899999999999999999999999
Q ss_pred CCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHh--
Q 008176 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML-- 433 (575)
Q Consensus 356 ~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~L-- 433 (575)
.+++.+++.++. ..+.|+. ...+...+..+. ...++||||||+|.+..++.....+.+.. .+..|+.++
T Consensus 77 ~~~~~v~~~~~~-~~~~~~~-~~~~~~~~~~~~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~---~~~~l~~ll~~ 147 (285)
T 3h4m_A 77 ATFIRVVGSELV-KKFIGEG-ASLVKDIFKLAK----EKAPSIIFIDEIDAIAAKRTDALTGGDRE---VQRTLMQLLAE 147 (285)
T ss_dssp CEEEEEEGGGGC-CCSTTHH-HHHHHHHHHHHH----HTCSEEEEEETTHHHHBCCSSSCCGGGGH---HHHHHHHHHHH
T ss_pred CCEEEEehHHHH-HhccchH-HHHHHHHHHHHH----HcCCeEEEEECHHHhcccCccccCCccHH---HHHHHHHHHHH
Confidence 999999998877 4477765 555666666543 24678999999999987654322222222 445554444
Q ss_pred -hCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHh-hhcccCCCCCCchhhh
Q 008176 434 -EGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (575)
Q Consensus 434 -Eg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~-rr~~~~IgF~~p~~e~ 494 (575)
++. ....++++|+|+|..+ ++..+.+ .|++..+.++.|+.++
T Consensus 148 ~~~~-------------------~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~ 192 (285)
T 3h4m_A 148 MDGF-------------------DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKG 192 (285)
T ss_dssp HHTT-------------------CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHH
T ss_pred hhCC-------------------CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHH
Confidence 421 0123588888888776 5555543 3788889998887765
No 27
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.66 E-value=5.7e-16 Score=162.08 Aligned_cols=170 Identities=25% Similarity=0.380 Sum_probs=118.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+|++.+++.|.+.+.....+. . .+.. ....+.++||+||||||||++|+++|+.++.+
T Consensus 85 ~i~G~~~~~~~l~~~i~~~~~~~--~----------------~~~~--~~~~~~~vLl~GppGtGKT~la~aia~~~~~~ 144 (357)
T 3d8b_A 85 DIAGVEFAKATIKEIVVWPMLRP--D----------------IFTG--LRGPPKGILLFGPPGTGKTLIGKCIASQSGAT 144 (357)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCT--T----------------TSCG--GGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE
T ss_pred HhCChHHHHHHHHHHHHHHhhCh--H----------------hHhh--ccCCCceEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 48999999999999886332210 0 0000 11234689999999999999999999999999
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCe
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~ 437 (575)
++.++++++. ..|+|+. ...++.++..+. ...++||||||||.+...+.. +.+....++++.|+..|++..
T Consensus 145 ~~~i~~~~l~-~~~~g~~-~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~lL~~l~~~~ 215 (357)
T 3d8b_A 145 FFSISASSLT-SKWVGEG-EKMVRALFAVAR----CQQPAVIFIDEIDSLLSQRGD---GEHESSRRIKTEFLVQLDGAT 215 (357)
T ss_dssp EEEEEGGGGC-CSSTTHH-HHHHHHHHHHHH----HTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC--
T ss_pred EEEEehHHhh-ccccchH-HHHHHHHHHHHH----hcCCeEEEEeCchhhhccCCC---CcchHHHHHHHHHHHHHhccc
Confidence 9999999987 4577765 566666666543 246799999999999876432 223334458899999999521
Q ss_pred ecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHhhhcccCCCCCCchhhh
Q 008176 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 438 v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~rr~~~~IgF~~p~~e~ 494 (575)
. ....++++|+++|..+ +++.+.+ |++..+.++.|+.+.
T Consensus 216 ~-----------------~~~~~v~vI~atn~~~~l~~~l~~-Rf~~~i~i~~p~~~~ 255 (357)
T 3d8b_A 216 T-----------------SSEDRILVVGATNRPQEIDEAARR-RLVKRLYIPLPEASA 255 (357)
T ss_dssp -------------------CCCCEEEEEEESCGGGBCHHHHT-TCCEEEECCCCCHHH
T ss_pred c-----------------cCCCCEEEEEecCChhhCCHHHHh-hCceEEEeCCcCHHH
Confidence 1 1134678888888765 6666655 777778888887664
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.65 E-value=9.4e-16 Score=161.82 Aligned_cols=170 Identities=25% Similarity=0.377 Sum_probs=112.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+|++.+++.|.+.+...... .. .+. .+..+..++||+||||||||++|+++|+.++.+
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~--~~----------------~~~--~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~ 175 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLR--PE----------------LFT--GLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT 175 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHC--TT----------------TSC--GGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred HhCCHHHHHHHHHHHHHHhccC--HH----------------Hhc--ccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc
Confidence 4899999999999988633321 00 000 011234789999999999999999999999999
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCe
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~ 437 (575)
|+.++++++. ..|+|+. ...+...|..+.. ..++||||||||.+...+.. +......++++.|+..|+|..
T Consensus 176 ~~~v~~~~l~-~~~~g~~-~~~~~~~~~~a~~----~~~~il~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~ 246 (389)
T 3vfd_A 176 FFNISAASLT-SKYVGEG-EKLVRALFAVARE----LQPSIIFIDQVDSLLCERRE---GEHDASRRLKTEFLIEFDGVQ 246 (389)
T ss_dssp EEEECSCCC--------C-HHHHHHHHHHHHH----SSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC
T ss_pred EEEeeHHHhh-ccccchH-HHHHHHHHHHHHh----cCCeEEEEECchhhcccCCC---ccchHHHHHHHHHHHHhhccc
Confidence 9999999987 4577776 5666777766542 46789999999999776432 222334558999999999521
Q ss_pred ecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHhhhcccCCCCCCchhhh
Q 008176 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 438 v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~rr~~~~IgF~~p~~e~ 494 (575)
. ....++++|+++|..+ ++..+.+ |+...+.|+.|+.+.
T Consensus 247 ~-----------------~~~~~v~vI~atn~~~~l~~~l~~-R~~~~i~i~~p~~~~ 286 (389)
T 3vfd_A 247 S-----------------AGDDRVLVMGATNRPQELDEAVLR-RFIKRVYVSLPNEET 286 (389)
T ss_dssp ----------------------CEEEEEEESCGGGCCHHHHT-TCCEEEECCCCCHHH
T ss_pred c-----------------cCCCCEEEEEecCCchhcCHHHHc-CcceEEEcCCcCHHH
Confidence 1 1124588888888765 6666654 677778888887665
No 29
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.65 E-value=2.8e-16 Score=169.54 Aligned_cols=217 Identities=20% Similarity=0.302 Sum_probs=136.4
Q ss_pred cccChHHHHHHHHHHHHhhhh--hHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh-
Q 008176 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l- 354 (575)
+|+|++++++.|.+++..+.. ..+... ..+++++||+||||||||++|+++|+.+
T Consensus 135 di~G~~~~k~~l~~~v~~p~~~~~~~~~~----------------------~~~~~~vLL~GppGtGKT~lA~aia~~~~ 192 (444)
T 2zan_A 135 DVAGLEGAKEALKEAVILPIKFPHLFTGK----------------------RTPWRGILLFGPPGTGKSYLAKAVATEAN 192 (444)
T ss_dssp GSCSCHHHHHHHHHHHTHHHHCTTTTSGG----------------------GCCCSEEEEECSTTSSHHHHHHHHHHHCC
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHhhcc----------------------CCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999998853322 111110 1134789999999999999999999999
Q ss_pred CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 355 ~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
+.+|+.++++++. ..|+|+. ...++.+|..+. ...++||||||||.+...+... ......++++.|+..|+
T Consensus 193 ~~~~~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~ 263 (444)
T 2zan_A 193 NSTFFSISSSDLV-SKWLGES-EKLVKNLFQLAR----ENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQ 263 (444)
T ss_dssp SSEEEEECCC----------C-CCTHHHHHHHHH----HSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTT
T ss_pred CCCEEEEeHHHHH-hhhcchH-HHHHHHHHHHHH----HcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHh
Confidence 8899999999887 4578876 566777776654 2468999999999998765432 22234458999999998
Q ss_pred CCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhh
Q 008176 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (575)
Q Consensus 435 g~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l 513 (575)
+.. ....++++|+++|.++ ++..+.+ |++..+.++.|+.+.. ..+...+....
T Consensus 264 ~~~------------------~~~~~v~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~~r-------~~il~~~l~~~ 317 (444)
T 2zan_A 264 GVG------------------VDNDGILVLGATNIPWVLDSAIRR-RFEKRIYIPLPEAHAR-------AAMFRLHLGST 317 (444)
T ss_dssp CSS------------------CCCSSCEEEEEESCGGGSCHHHHT-TCCEEEECCCCCHHHH-------HHHHHHHHTTS
T ss_pred Ccc------------------cCCCCEEEEecCCCccccCHHHHh-hcceEEEeCCcCHHHH-------HHHHHHHHhcC
Confidence 521 1234578888888876 6666654 7888888999887651 22222222111
Q ss_pred cchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHhhhHHHHHHH
Q 008176 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLTEPKNALGKQ 559 (575)
Q Consensus 514 ~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~e~l~~L~k~ 559 (575)
.. .+.+..+..+.. ....++-.++..++.++...-+++
T Consensus 318 ~~------~l~~~~l~~la~--~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 318 QN------SLTEADFQELGR--KTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp CE------ECCHHHHHHHHH--HTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred CC------CCCHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHH
Confidence 10 011111222111 134678888888888665444443
No 30
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.65 E-value=6.2e-16 Score=155.87 Aligned_cols=169 Identities=25% Similarity=0.402 Sum_probs=117.7
Q ss_pred cccChHHHHHHHHHHHHhhhh--hHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
.|+|++.+++.|.+.+..... ..+... ..++.++||+||||||||++|+++|+.++
T Consensus 22 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~----------------------~~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 22 DIAGQDVAKQALQEMVILPSVRPELFTGL----------------------RAPAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp GSCCCHHHHHHHHHHTHHHHHCGGGSCGG----------------------GCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred HhCChHHHHHHHHHHHHhhhhCHHHHhcC----------------------CCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 389999999999998863322 111111 11246899999999999999999999999
Q ss_pred CCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 356 ~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+++.++++++. ..+.|+. ...++..+..+. ...++||||||+|.+...+... .......+++.|+..+++
T Consensus 80 ~~~~~i~~~~l~-~~~~~~~-~~~~~~~~~~~~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~ 150 (297)
T 3b9p_A 80 ATFLNISAASLT-SKYVGDG-EKLVRALFAVAR----HMQPSIIFIDEVDSLLSERSSS---EHEASRRLKTEFLVEFDG 150 (297)
T ss_dssp CEEEEEESTTTS-SSSCSCH-HHHHHHHHHHHH----HTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHH
T ss_pred CCeEEeeHHHHh-hcccchH-HHHHHHHHHHHH----HcCCcEEEeccHHHhccccccC---cchHHHHHHHHHHHHHhc
Confidence 999999999876 4577765 556666665543 2568999999999998765321 122234588899999985
Q ss_pred CeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHhhhcccCCCCCCchhhh
Q 008176 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 436 ~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~rr~~~~IgF~~p~~e~ 494 (575)
.... ....++++|+++|.++ ++..+.+ |++..+.++.|+.+.
T Consensus 151 ~~~~----------------~~~~~v~vi~~tn~~~~l~~~l~~-R~~~~i~~~~p~~~~ 193 (297)
T 3b9p_A 151 LPGN----------------PDGDRIVVLAATNRPQELDEAALR-RFTKRVYVSLPDEQT 193 (297)
T ss_dssp CC----------------------CEEEEEEESCGGGBCHHHHH-HCCEEEECCCCCHHH
T ss_pred cccc----------------CCCCcEEEEeecCChhhCCHHHHh-hCCeEEEeCCcCHHH
Confidence 2110 1124578888888764 6666655 777888888887664
No 31
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.64 E-value=2e-15 Score=148.52 Aligned_cols=172 Identities=24% Similarity=0.309 Sum_probs=104.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+|++++|+.|.+.+.. ... ++.+....+. .+.++||+||||||||++|+++|+.++.+
T Consensus 7 ~i~G~~~~~~~l~~~~~~-~~~------------------~~~~~~~g~~-~~~~vll~G~~GtGKT~la~~la~~~~~~ 66 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDY-LKS------------------PERFLQLGAK-VPKGALLLGPPGCGKTLLAKAVATEAQVP 66 (262)
T ss_dssp SSCSCHHHHHHHHHHHHH-HHC------------------CC------CC-CCCEEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred HhCCHHHHHHHHHHHHHH-HHC------------------HHHHHHcCCC-CCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 389999999999988752 110 0000000111 23689999999999999999999999999
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccC-CCcchHHHHHHHHHHhhCC
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS-RDVSGEGVQQALLKMLEGT 436 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~-~~~~~e~vq~aLL~~LEg~ 436 (575)
++.++++++. ..+.|.. ...+...|..+. ...++||||||+|.+...+.....+ .+.......+.|+..+++.
T Consensus 67 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~a~----~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 140 (262)
T 2qz4_A 67 FLAMAGAEFV-EVIGGLG-AARVRSLFKEAR----ARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM 140 (262)
T ss_dssp EEEEETTTTS-SSSTTHH-HHHHHHHHHHHH----HTCSEEEEEECC-------------------CHHHHHHHHHHHTC
T ss_pred EEEechHHHH-hhccChh-HHHHHHHHHHHH----hcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc
Confidence 9999999876 3455554 455666666543 2357899999999997765322111 0111122556677777631
Q ss_pred eecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHh-hhcccCCCCCCchhhh
Q 008176 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (575)
Q Consensus 437 ~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~-rr~~~~IgF~~p~~e~ 494 (575)
-...++++|+++|..+ ++..+.+ .|++..+.++.|+.++
T Consensus 141 -------------------~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~ 181 (262)
T 2qz4_A 141 -------------------GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQE 181 (262)
T ss_dssp -------------------CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHH
T ss_pred -------------------CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHH
Confidence 0234678888888765 4444432 3777788888887654
No 32
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.64 E-value=3.1e-16 Score=173.36 Aligned_cols=157 Identities=23% Similarity=0.285 Sum_probs=98.7
Q ss_pred ChHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHH
Q 008176 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLL 346 (575)
Q Consensus 267 t~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtL 346 (575)
...+..+.|+++++|++++++.+.+.+..... +...+..+++|+||||||||++
T Consensus 71 ~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~--------------------------~~~~~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 71 DLKEAGRLLDEEHHGLEKVKERILEYLAVQKL--------------------------TKSLKGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHH--------------------------SSSCCSCEEEEESSSSSSHHHH
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh--------------------------cccCCCCEEEEECCCCCCHHHH
Confidence 34556677888899999999999876642111 1112346889999999999999
Q ss_pred HHHHHHHhCCCEEEeccccccc--------cccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCC
Q 008176 347 AKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (575)
Q Consensus 347 AraLA~~l~~~fv~v~~s~l~~--------sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~ 418 (575)
|+++|+.++.++..+++..+.. ..|+|.. ...+...|..+. ..++|+||||||++..++..
T Consensus 125 ar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~-~~~~~~~~~~a~-----~~~~vl~lDEid~l~~~~~~----- 193 (543)
T 3m6a_A 125 AKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM-PGRIIQGMKKAG-----KLNPVFLLDEIDKMSSDFRG----- 193 (543)
T ss_dssp HHHHHHHHTCEEEEECCCC---------------------CHHHHHHTTC-----SSSEEEEEEESSSCC----------
T ss_pred HHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC-chHHHHHHHHhh-----ccCCEEEEhhhhhhhhhhcc-----
Confidence 9999999999999999877432 1244443 223333444332 24559999999999876321
Q ss_pred CcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC
Q 008176 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (575)
Q Consensus 419 ~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d 471 (575)
..++.||++||+.. ...+.++.....++..+++||+|+|..+
T Consensus 194 -----~~~~~LL~~ld~~~------~~~~~~~~~~~~~~~~~v~iI~ttN~~~ 235 (543)
T 3m6a_A 194 -----DPSSAMLEVLDPEQ------NSSFSDHYIEETFDLSKVLFIATANNLA 235 (543)
T ss_dssp ---------CCGGGTCTTT------TTBCCCSSSCCCCBCSSCEEEEECSSTT
T ss_pred -----CHHHHHHHHHhhhh------cceeecccCCeeecccceEEEeccCccc
Confidence 16789999998432 1223334444556778899999999654
No 33
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.63 E-value=1.7e-15 Score=165.67 Aligned_cols=168 Identities=23% Similarity=0.367 Sum_probs=124.9
Q ss_pred cccChHHHHHHHHHHHHhhh--hhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 278 FVIGQERAKKVLSVAVYNHY--MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~--~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
.|+|++.+++.|.+.+.... ...+...... .+.++||+||||||||++|+++|+.++
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~---------------------~~~~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVK---------------------PPRGILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC---------------------CCCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCC---------------------CCCcEEEECcCCCCHHHHHHHHHHHhC
Confidence 48999999999999886332 2222222111 236899999999999999999999999
Q ss_pred CCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 356 ~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.+|+.++|.++. ..+.|+. ...++..|..+.. ..++||||||||.+..++... ......++++.|+.+|++
T Consensus 264 ~~fv~vn~~~l~-~~~~g~~-~~~~~~~f~~A~~----~~p~iLfLDEId~l~~~~~~~---~~~~~~~~~~~LL~~ld~ 334 (489)
T 3hu3_A 264 AFFFLINGPEIM-SKLAGES-ESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDG 334 (489)
T ss_dssp SEEEEEEHHHHH-TSCTTHH-HHHHHHHHHHHHH----TCSEEEEEESHHHHCBCTTSC---CCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEchHhh-hhhcchh-HHHHHHHHHHHHh----cCCcEEEecchhhhccccccc---cchHHHHHHHHHHHHhhc
Confidence 999999999987 4578876 5667777777642 467899999999998865421 122334589999999994
Q ss_pred CeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHh-hhcccCCCCCCchhhh
Q 008176 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (575)
Q Consensus 436 ~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~-rr~~~~IgF~~p~~e~ 494 (575)
.. ...++++|+++|.++ +++.+.+ .+|+..+.|+.|+.+.
T Consensus 335 ~~-------------------~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~e 376 (489)
T 3hu3_A 335 LK-------------------QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376 (489)
T ss_dssp SC-------------------TTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHH
T ss_pred cc-------------------cCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHH
Confidence 21 234588899988775 5555554 4888889999988765
No 34
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.62 E-value=4.2e-16 Score=159.05 Aligned_cols=148 Identities=13% Similarity=0.173 Sum_probs=93.2
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhH
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~ 409 (575)
+.++||+||||||||++|+++|+.++.+++.++++++. ..|+|+. ...++..|..+........++||||||||++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHH-CC---HH-HHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhh-hccCchh-HHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 36889999999999999999999999999999999987 5688876 667777777663222345789999999999988
Q ss_pred hhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHH-hhhcccCCCC
Q 008176 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGF 487 (575)
Q Consensus 410 ~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~-~rr~~~~IgF 487 (575)
.+.... ........+++.|+++||+..... .. +........++++|+|+|..+ ++.++. ..|++..+.+
T Consensus 114 ~~~~~~-~~~~~~~~v~~~Ll~~ld~~~~~~------~~--~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~ 184 (293)
T 3t15_A 114 RMGGTT-QYTVNNQMVNATLMNIADNPTNVQ------LP--GMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 184 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-------------------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC
T ss_pred CCCCCc-cccchHHHHHHHHHHHhccccccc------cc--cccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC
Confidence 543221 222234458999999999532111 00 000122456788899998876 665554 3688887765
Q ss_pred C
Q 008176 488 G 488 (575)
Q Consensus 488 ~ 488 (575)
|
T Consensus 185 P 185 (293)
T 3t15_A 185 P 185 (293)
T ss_dssp C
T ss_pred c
Confidence 4
No 35
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.58 E-value=2.6e-14 Score=146.53 Aligned_cols=157 Identities=22% Similarity=0.300 Sum_probs=101.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
.++|++.+++.+..++..... . . ....++||+||||||||++|+++|+.++.+
T Consensus 30 ~iiG~~~~~~~l~~~l~~~~~----~-~----------------------~~~~~vll~G~~GtGKT~la~~ia~~~~~~ 82 (338)
T 3pfi_A 30 GYIGQESIKKNLNVFIAAAKK----R-N----------------------ECLDHILFSGPAGLGKTTLANIISYEMSAN 82 (338)
T ss_dssp GCCSCHHHHHHHHHHHHHHHH----T-T----------------------SCCCCEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred HhCChHHHHHHHHHHHHHHHh----c-C----------------------CCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 379999999999988852211 0 0 012689999999999999999999999999
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCe
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~ 437 (575)
++.+++..+.. ...+...+.. ...+++||||||+.+... +++.|+..|++..
T Consensus 83 ~~~~~~~~~~~--------~~~~~~~~~~------~~~~~vl~lDEi~~l~~~--------------~~~~Ll~~l~~~~ 134 (338)
T 3pfi_A 83 IKTTAAPMIEK--------SGDLAAILTN------LSEGDILFIDEIHRLSPA--------------IEEVLYPAMEDYR 134 (338)
T ss_dssp EEEEEGGGCCS--------HHHHHHHHHT------CCTTCEEEEETGGGCCHH--------------HHHHHHHHHHTSC
T ss_pred eEEecchhccc--------hhHHHHHHHh------ccCCCEEEEechhhcCHH--------------HHHHHHHHHHhcc
Confidence 99999876542 1223333322 246799999999999876 8999999999654
Q ss_pred ecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHhhhcccCCCCCCchhh
Q 008176 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRA 493 (575)
Q Consensus 438 v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~rr~~~~IgF~~p~~e 493 (575)
+.+.... ......+.++..++++|+++|..+ ++..+.. |++..+.++.|+.+
T Consensus 135 ~~~~~~~---~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~-R~~~~i~l~~~~~~ 187 (338)
T 3pfi_A 135 LDIIIGS---GPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD-RFGMQFRLEFYKDS 187 (338)
T ss_dssp C------------CCCCCCCCCCCEEEEEESCGGGSCHHHHT-TCSEEEECCCCCHH
T ss_pred chhhccc---CccccceecCCCCeEEEEeCCCccccCHHHHh-hcCEEeeCCCcCHH
Confidence 3321000 000112233344678888888654 3333333 34455555555443
No 36
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.58 E-value=2.3e-16 Score=181.92 Aligned_cols=173 Identities=24% Similarity=0.301 Sum_probs=123.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+++|++++|+.|.+.+.....+ ++.+....+ .++.++||+||||||||++|+++|+.++.+
T Consensus 478 di~gl~~vk~~l~~~v~~~~~~------------------~~~~~~~~~-~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 478 DIGGLEDVKRELQELVQYPVEH------------------PDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp SSSCCCCHHHHHHTTTTSSSSS------------------CTTTTCCCC-CCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred ccccchhhhhhHHHHHHhhhhc------------------hHHHHhcCC-CCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4899999999999877421110 011111111 123679999999999999999999999999
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCe
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~ 437 (575)
++.++++++. ..|+|+. ...++.+|..+.. ..++||||||||.+...|............++++.||..||+.
T Consensus 539 ~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~- 611 (806)
T 1ypw_A 539 FISIKGPELL-TMWFGES-EANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM- 611 (806)
T ss_dssp CCCCCCSSST-TCCTTTS-SHHHHHHHHHHHH----HCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---
T ss_pred EEEEechHhh-hhhcCcc-HHHHHHHHHHHHh----cCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcc-
Confidence 9999999987 5688887 6777888877653 4679999999999987764322122223456889999999852
Q ss_pred ecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHh-hhcccCCCCCCchhhh
Q 008176 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (575)
Q Consensus 438 v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~-rr~~~~IgF~~p~~e~ 494 (575)
....++++|+|+|.++ ++.++.+ +||+..|.|+.|+.+.
T Consensus 612 ------------------~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~ 652 (806)
T 1ypw_A 612 ------------------STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652 (806)
T ss_dssp ----------------------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSH
T ss_pred ------------------cccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHH
Confidence 1235678888988776 5655543 4899999999998765
No 37
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.55 E-value=1.2e-15 Score=151.57 Aligned_cols=172 Identities=24% Similarity=0.367 Sum_probs=108.7
Q ss_pred cccChHHHHHHHHHHHHh-hhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCC
Q 008176 278 FVIGQERAKKVLSVAVYN-HYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~-~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~ 356 (575)
.|+|++++++.|.+++.. .+...+..... . .+.++||+||||||||++|+++|+.++.
T Consensus 12 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~--------------------~-~~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 12 DMAGNEEAKEEVVEIVDFLKYPERYANLGA--------------------K-IPKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp TSSSCTTTHHHHHHHHHHHHCHHHHHHHSC--------------------C-CCSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred HhCCcHHHHHHHHHHHHHHHChHHHHHCCC--------------------C-CCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 389999999999987752 11111111111 1 1256999999999999999999999999
Q ss_pred CEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhccc-CCCcchHHHHHHHHHHhhC
Q 008176 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI-SRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 357 ~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~-~~~~~~e~vq~aLL~~LEg 435 (575)
+++.++++++.. .+.|.. ...++..|..+. ...++||||||+|.+..++...+. ..+.....+++.|+..|++
T Consensus 71 ~~~~v~~~~~~~-~~~~~~-~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (268)
T 2r62_A 71 PFFSMGGSSFIE-MFVGLG-ASRVRDLFETAK----KQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDG 144 (268)
T ss_dssp CCCCCCSCTTTT-SCSSSC-SSSSSTTHHHHH----HSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTC
T ss_pred CEEEechHHHHH-hhcchH-HHHHHHHHHHHH----hcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhC
Confidence 999999988763 455554 223334444332 235789999999999876532211 1111112256667777763
Q ss_pred CeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHH-hhhcccCCCCCCchhhh
Q 008176 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 436 ~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~-~rr~~~~IgF~~p~~e~ 494 (575)
.. -...++++|+++|..+ ++..+. +.|++..+.|+.|+.++
T Consensus 145 ~~------------------~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~ 187 (268)
T 2r62_A 145 FG------------------SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNG 187 (268)
T ss_dssp SS------------------CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTT
T ss_pred cc------------------cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHH
Confidence 10 0234478888888776 444443 34788899999998765
No 38
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.54 E-value=1.9e-14 Score=144.56 Aligned_cols=175 Identities=26% Similarity=0.370 Sum_probs=112.4
Q ss_pred hhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
.+++ |+|++++++.+..++. .|.. +.+++++++.++++ ++|+||||||||++++++++.
T Consensus 38 ~~~~-i~g~~~~~~~l~~l~~-~~~~------------------~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 38 TFKD-VAGAEEAKEELKEIVE-FLKN------------------PSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CGGG-SSSCHHHHHHHHHHHH-HHHC------------------HHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred CHHH-hCChHHHHHHHHHHHH-HHHC------------------HHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 4554 8999999999988774 2221 11233445555544 999999999999999999999
Q ss_pred hCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHh
Q 008176 354 VNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (575)
Q Consensus 354 l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~L 433 (575)
++.+++.+++.++.. .+.+.. ...+..+|+.+. ...++++++||+|.+...+...............+.++..|
T Consensus 97 ~~~~~i~~~~~~~~~-~~~~~~-~~~i~~~~~~~~----~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l 170 (278)
T 1iy2_A 97 ARVPFITASGSDFVE-MFVGVG-AARVRDLFETAK----RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 170 (278)
T ss_dssp TTCCEEEEEHHHHHH-STTTHH-HHHHHHHHHHHH----TSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHH
T ss_pred cCCCEEEecHHHHHH-HHhhHH-HHHHHHHHHHHH----hcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHH
Confidence 999999998877652 234433 334455555432 13568999999999876543211111222234566777777
Q ss_pred hCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHh-hhcccCCCCCCchhhh
Q 008176 434 EGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (575)
Q Consensus 434 Eg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~-rr~~~~IgF~~p~~e~ 494 (575)
+|.. ....++++++++.++ +++.+.+ .||+..+.++.|+.+.
T Consensus 171 sgg~-------------------~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 214 (278)
T 1iy2_A 171 DGFE-------------------KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 214 (278)
T ss_dssp TTCC-------------------TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHH
T ss_pred hCCC-------------------CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHH
Confidence 7421 112356666666665 6666554 3889999999998765
No 39
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.54 E-value=4e-14 Score=139.90 Aligned_cols=172 Identities=26% Similarity=0.359 Sum_probs=111.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+|+|++++++.+..++.. |.. +..++++++.++++ ++|+||||||||++++++++.++.+
T Consensus 17 ~i~g~~~~~~~l~~l~~~-~~~------------------~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~~~~~ 76 (254)
T 1ixz_A 17 DVAGAEEAKEELKEIVEF-LKN------------------PSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEARVP 76 (254)
T ss_dssp GCCSCHHHHHHHHHHHHH-HHC------------------HHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HhCCcHHHHHHHHHHHHH-HHC------------------HHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 379999999999887642 221 01233445555544 9999999999999999999999999
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCe
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~ 437 (575)
++.+++.++.. .+.+.. ...+...|+.+. ...++++++||+|.+...+............+.++.++..|+|..
T Consensus 77 ~i~~~~~~~~~-~~~~~~-~~~i~~~~~~~~----~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~ 150 (254)
T 1ixz_A 77 FITASGSDFVE-MFVGVG-AARVRDLFETAK----RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 150 (254)
T ss_dssp EEEEEHHHHHH-SCTTHH-HHHHHHHHHHHT----TSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC
T ss_pred EEEeeHHHHHH-HHhhHH-HHHHHHHHHHHH----hcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC
Confidence 99998877652 244443 344555555542 135689999999999766432111122233446788888888521
Q ss_pred ecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHh-hhcccCCCCCCchhhh
Q 008176 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (575)
Q Consensus 438 v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~-rr~~~~IgF~~p~~e~ 494 (575)
....++++++++.++ +++.+.+ .||+..+.++.|+.+.
T Consensus 151 -------------------~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 190 (254)
T 1ixz_A 151 -------------------KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190 (254)
T ss_dssp -------------------TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHH
T ss_pred -------------------CCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHH
Confidence 112356667777665 5555543 3788899999998765
No 40
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.54 E-value=1.8e-14 Score=147.83 Aligned_cols=141 Identities=25% Similarity=0.297 Sum_probs=94.1
Q ss_pred HHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHH
Q 008176 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAK 348 (575)
Q Consensus 269 ~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAr 348 (575)
+.+...+.+.|+||+++++.+..++. ...++||+||||||||++|+
T Consensus 19 ~~~~~~~~~~i~g~~~~~~~l~~~l~----------------------------------~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 19 KEVIDEVGKVVVGQKYMINRLLIGIC----------------------------------TGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHHHTTTCCSCHHHHHHHHHHHH----------------------------------HTCCEEEESCCCHHHHHHHH
T ss_pred HHHHHHhccceeCcHHHHHHHHHHHH----------------------------------cCCeEEEECCCCCcHHHHHH
Confidence 45667777889999999999887774 12689999999999999999
Q ss_pred HHHHHhCCCEEEecccc-ccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHH
Q 008176 349 TLARYVNVPFVIADATT-LTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (575)
Q Consensus 349 aLA~~l~~~fv~v~~s~-l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~ 427 (575)
++|+.++.+++.++++. ....++.|..........+..... ....+||||||++.+.++ +++
T Consensus 65 ~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g---~l~~~vl~iDEi~~~~~~--------------~~~ 127 (331)
T 2r44_A 65 TLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKG---PVFSNFILADEVNRSPAK--------------VQS 127 (331)
T ss_dssp HHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEEC---TTCSSEEEEETGGGSCHH--------------HHH
T ss_pred HHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccC---cccccEEEEEccccCCHH--------------HHH
Confidence 99999999999988853 222223332211000000000000 012479999999999876 899
Q ss_pred HHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCc
Q 008176 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (575)
Q Consensus 428 aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~ 470 (575)
.|++.|+++.+.+. +.. .-...++++|+|+|..
T Consensus 128 ~Ll~~l~~~~~~~~--g~~--------~~~~~~~~viat~np~ 160 (331)
T 2r44_A 128 ALLECMQEKQVTIG--DTT--------YPLDNPFLVLATQNPV 160 (331)
T ss_dssp HHHHHHHHSEEEET--TEE--------EECCSSCEEEEEECTT
T ss_pred HHHHHHhcCceeeC--CEE--------EECCCCEEEEEecCCC
Confidence 99999997665541 111 1123456777887744
No 41
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.52 E-value=4.3e-14 Score=140.53 Aligned_cols=145 Identities=19% Similarity=0.318 Sum_probs=87.1
Q ss_pred hcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 275 Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
+++ ++|++.+++.+.+.+.... ....++||+||||||||++|+++++.+
T Consensus 5 f~~-~ig~~~~~~~~~~~~~~~~------------------------------~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 5 KDN-LLGEANSFLEVLEQVSHLA------------------------------PLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHT------------------------------TSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccc-ceeCCHHHHHHHHHHHHHh------------------------------CCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 444 6899999999887774110 012689999999999999999999987
Q ss_pred C---CCEEEecccccccc----ccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHH
Q 008176 355 N---VPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (575)
Q Consensus 355 ~---~~fv~v~~s~l~~s----g~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~ 427 (575)
. .+++.++|+.+... .+.|.. ...+..........+..+.+++||||||+.+... +|+
T Consensus 54 ~~~~~~~~~v~~~~~~~~~~~~~l~g~~-~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~--------------~q~ 118 (265)
T 2bjv_A 54 SRWQGPFISLNCAALNENLLDSELFGHE-AGAFTGAQKRHPGRFERADGGTLFLDELATAPMM--------------VQE 118 (265)
T ss_dssp TTTTSCEEEEEGGGSCHHHHHHHHHCCC----------CCCCHHHHTTTSEEEEESGGGSCHH--------------HHH
T ss_pred CccCCCeEEEecCCCChhHHHHHhcCCc-ccccccccccccchhhhcCCcEEEEechHhcCHH--------------HHH
Confidence 4 68999999876421 011111 0000010001111233356789999999999876 899
Q ss_pred HHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHH
Q 008176 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (575)
Q Consensus 428 aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i 476 (575)
.|+++|+...+. +.+.. .....++.+|+++|. ++++.+
T Consensus 119 ~Ll~~l~~~~~~---------~~g~~-~~~~~~~~iI~atn~-~~~~~~ 156 (265)
T 2bjv_A 119 KLLRVIEYGELE---------RVGGS-QPLQVNVRLVCATNA-DLPAMV 156 (265)
T ss_dssp HHHHHHHHCEEC---------CCCC---CEECCCEEEEEESS-CHHHHH
T ss_pred HHHHHHHhCCee---------cCCCc-ccccCCeEEEEecCc-CHHHHH
Confidence 999999954321 01111 112345778888884 344433
No 42
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.50 E-value=3.3e-14 Score=145.92 Aligned_cols=149 Identities=21% Similarity=0.341 Sum_probs=95.0
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh--
Q 008176 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (575)
Q Consensus 277 ~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l-- 354 (575)
+.++|++.+++.+...+...- ....++||+||||||||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a------------------------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~ 51 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA------------------------------PSDATVLIHGDSGTGKELVARALHACSAR 51 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC------------------------------STTSCEEEESCTTSCHHHHHHHHHHHSSC
T ss_pred CCcEECCHHHHHHHHHHHHHh------------------------------CCCCcEEEECCCCchHHHHHHHHHHhCcc
Confidence 358999999999888875110 123689999999999999999999876
Q ss_pred -CCCEEEecccccccc----ccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHH
Q 008176 355 -NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (575)
Q Consensus 355 -~~~fv~v~~s~l~~s----g~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aL 429 (575)
+.+|+.++|+.+... .+.|.. ...+..........+..+.+++||||||+.+... +|..|
T Consensus 52 ~~~~~v~v~~~~~~~~l~~~~lfg~~-~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~--------------~q~~L 116 (304)
T 1ojl_A 52 SDRPLVTLNCAALNESLLESELFGHE-KGAFTGADKRREGRFVEADGGTLFLDEIGDISPL--------------MQVRL 116 (304)
T ss_dssp SSSCCCEEECSSCCHHHHHHHHTCCC-SSCCC---CCCCCHHHHHTTSEEEEESCTTCCHH--------------HHHHH
T ss_pred cCCCeEEEeCCCCChHHHHHHhcCcc-ccccCchhhhhcCHHHhcCCCEEEEeccccCCHH--------------HHHHH
Confidence 578999999876421 111111 0000000001112234456799999999999876 89999
Q ss_pred HHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhc
Q 008176 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQ 481 (575)
Q Consensus 430 L~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~ 481 (575)
+.+|+...+.- .|. . .....++.+|+++|. ++++.+..++|
T Consensus 117 l~~l~~~~~~~--~g~-----~---~~~~~~~riI~atn~-~l~~~v~~g~f 157 (304)
T 1ojl_A 117 LRAIQEREVQR--VGS-----N---QTISVDVRLIAATHR-DLAEEVSAGRF 157 (304)
T ss_dssp HHHHHSSBCCB--TTB-----C---CCCBCCCEEEEEESS-CHHHHHHHTSS
T ss_pred HHHHhcCEeee--cCC-----c---ccccCCeEEEEecCc-cHHHHHHhCCc
Confidence 99999543321 011 0 112345788888884 46666655443
No 43
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.49 E-value=5.7e-13 Score=135.17 Aligned_cols=136 Identities=24% Similarity=0.371 Sum_probs=91.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
.++|++.+++.+..++..... .. ....++||+||||||||++|+++++.++.+
T Consensus 13 ~~ig~~~~~~~l~~~l~~~~~-----~~----------------------~~~~~vll~G~~GtGKT~la~~i~~~~~~~ 65 (324)
T 1hqc_A 13 EYIGQERLKQKLRVYLEAAKA-----RK----------------------EPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65 (324)
T ss_dssp TCCSCHHHHHHHHHHHHHHHH-----HC----------------------SCCCCCEEECCTTCCCHHHHHHHHHHHTCC
T ss_pred HhhCHHHHHHHHHHHHHHHHc-----cC----------------------CCCCcEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 379999999999888752111 00 012689999999999999999999999999
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCe
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~ 437 (575)
++.++++.+.. ...+...+..+ ...+++|||||++.+... .++.|+..|+...
T Consensus 66 ~~~~~~~~~~~--------~~~l~~~l~~~-----~~~~~~l~lDEi~~l~~~--------------~~~~L~~~l~~~~ 118 (324)
T 1hqc_A 66 LRVTSGPAIEK--------PGDLAAILANS-----LEEGDILFIDEIHRLSRQ--------------AEEHLYPAMEDFV 118 (324)
T ss_dssp EEEECTTTCCS--------HHHHHHHHTTT-----CCTTCEEEETTTTSCCHH--------------HHHHHHHHHHHSE
T ss_pred EEEEeccccCC--------hHHHHHHHHHh-----ccCCCEEEEECCcccccc--------------hHHHHHHHHHhhh
Confidence 99999877542 12223333321 146789999999999876 7899999999654
Q ss_pred ecccCCCcccCCCCCcceecCCCEEEEecCCCc
Q 008176 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (575)
Q Consensus 438 v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~ 470 (575)
+.+.... ......+.....++++|+++|..
T Consensus 119 ~~~v~~~---~~~~~~~~~~~~~~~~i~~t~~~ 148 (324)
T 1hqc_A 119 MDIVIGQ---GPAARTIRLELPRFTLIGATTRP 148 (324)
T ss_dssp EEECCSS---SSSCCCEEEECCCCEEEEEESCC
T ss_pred hHHhccc---cccccccccCCCCEEEEEeCCCc
Confidence 4321110 00111122334567888888754
No 44
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.49 E-value=4.2e-14 Score=129.19 Aligned_cols=122 Identities=17% Similarity=0.225 Sum_probs=86.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
.++|++.+++.+.+.+... .....+|||+||||||||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~------------------------------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL------------------------------SETDIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH------------------------------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CceeCCHHHHHHHHHHHHH------------------------------hCCCCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 4799999999998887511 0123689999999999999999999886
Q ss_pred CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 355 ~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
+.+|+ ++|..+... ......+. .+.+++|||||||.+... +|+.|+.+|+
T Consensus 52 ~~~~v-~~~~~~~~~--------~~~~~~~~-------~a~~g~l~ldei~~l~~~--------------~q~~Ll~~l~ 101 (145)
T 3n70_A 52 QGEFV-YRELTPDNA--------PQLNDFIA-------LAQGGTLVLSHPEHLTRE--------------QQYHLVQLQS 101 (145)
T ss_dssp TSCCE-EEECCTTTS--------SCHHHHHH-------HHTTSCEEEECGGGSCHH--------------HHHHHHHHHH
T ss_pred CCCEE-EECCCCCcc--------hhhhcHHH-------HcCCcEEEEcChHHCCHH--------------HHHHHHHHHh
Confidence 77899 999876532 11122222 246789999999999877 8999999996
Q ss_pred CCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhc
Q 008176 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQ 481 (575)
Q Consensus 435 g~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~ 481 (575)
. ...++.+|+++|. ++++.+...++
T Consensus 102 ~---------------------~~~~~~~I~~t~~-~~~~~~~~~~~ 126 (145)
T 3n70_A 102 Q---------------------EHRPFRLIGIGDT-SLVELAASNHI 126 (145)
T ss_dssp S---------------------SSCSSCEEEEESS-CHHHHHHHSCC
T ss_pred h---------------------cCCCEEEEEECCc-CHHHHHHcCCC
Confidence 2 1223456777774 56666665444
No 45
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.48 E-value=1.2e-13 Score=141.01 Aligned_cols=105 Identities=23% Similarity=0.253 Sum_probs=73.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
.++|++++++.|..++... . .+..+|+.||||||||++|+++|+.++.+
T Consensus 27 ~ivg~~~~~~~l~~~l~~~----------~---------------------~~~~~L~~G~~G~GKT~la~~la~~l~~~ 75 (324)
T 3u61_B 27 ECILPAFDKETFKSITSKG----------K---------------------IPHIILHSPSPGTGKTTVAKALCHDVNAD 75 (324)
T ss_dssp TSCCCHHHHHHHHHHHHTT----------C---------------------CCSEEEECSSTTSSHHHHHHHHHHHTTEE
T ss_pred HHhCcHHHHHHHHHHHHcC----------C---------------------CCeEEEeeCcCCCCHHHHHHHHHHHhCCC
Confidence 3799999999999888500 0 12456788889999999999999999999
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhh-HhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT-KKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~-~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
++.+++++... ......+........ ....+.||||||+|.+. .. .++.|+..|+.
T Consensus 76 ~~~i~~~~~~~-----~~i~~~~~~~~~~~~---~~~~~~vliiDEi~~l~~~~--------------~~~~L~~~le~ 132 (324)
T 3u61_B 76 MMFVNGSDCKI-----DFVRGPLTNFASAAS---FDGRQKVIVIDEFDRSGLAE--------------SQRHLRSFMEA 132 (324)
T ss_dssp EEEEETTTCCH-----HHHHTHHHHHHHBCC---CSSCEEEEEEESCCCGGGHH--------------HHHHHHHHHHH
T ss_pred EEEEcccccCH-----HHHHHHHHHHHhhcc---cCCCCeEEEEECCcccCcHH--------------HHHHHHHHHHh
Confidence 99999866331 111111222111110 01256899999999997 55 78999999983
No 46
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.45 E-value=1.8e-13 Score=136.65 Aligned_cols=130 Identities=22% Similarity=0.252 Sum_probs=83.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccccccccchh---hhHHHHHhhhchhhHHhhccCeEeehhHhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDV---ESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~---~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l 407 (575)
.++||+||||||||++|+++|+.++.+++.+++.+. +.|... ...++..+..+. ...++||||||||.+
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~----~~g~~~~~~~~~~~~~~~~~~----~~~~~vl~iDEid~l 136 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK----MIGFSETAKCQAMKKIFDDAY----KSQLSCVVVDDIERL 136 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG----CTTCCHHHHHHHHHHHHHHHH----TSSEEEEEECCHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH----hcCCchHHHHHHHHHHHHHHH----hcCCcEEEEEChhhh
Confidence 689999999999999999999999999999988752 333321 233444444332 245789999999999
Q ss_pred hHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHhhhcccCCC
Q 008176 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIG 486 (575)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~rr~~~~Ig 486 (575)
...+.. .......+++.|+..+++.. ....++++|+++|..+ ++++...+++...+.
T Consensus 137 ~~~~~~----~~~~~~~~l~~L~~~~~~~~------------------~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~ 194 (272)
T 1d2n_A 137 LDYVPI----GPRFSNLVLQALLVLLKKAP------------------PQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIH 194 (272)
T ss_dssp TTCBTT----TTBCCHHHHHHHHHHTTCCC------------------STTCEEEEEEEESCHHHHHHTTCTTTSSEEEE
T ss_pred hccCCC----ChhHHHHHHHHHHHHhcCcc------------------CCCCCEEEEEecCChhhcchhhhhcccceEEc
Confidence 654221 11222347788888777310 1234577888888664 333223345555666
Q ss_pred CCCc
Q 008176 487 FGAP 490 (575)
Q Consensus 487 F~~p 490 (575)
++..
T Consensus 195 ~p~l 198 (272)
T 1d2n_A 195 VPNI 198 (272)
T ss_dssp CCCE
T ss_pred CCCc
Confidence 6544
No 47
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.42 E-value=3.7e-13 Score=145.61 Aligned_cols=105 Identities=31% Similarity=0.443 Sum_probs=73.5
Q ss_pred hcccccChHHHH---HHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHH
Q 008176 275 LDKFVIGQERAK---KVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLA 351 (575)
Q Consensus 275 Ld~~VvGqd~ak---~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA 351 (575)
|++ ++||++++ +.|...+... ...++||+||||||||++|++++
T Consensus 25 l~~-ivGq~~~~~~~~~L~~~i~~~--------------------------------~~~~vLL~GppGtGKTtlAr~ia 71 (447)
T 3pvs_A 25 LAQ-YIGQQHLLAAGKPLPRAIEAG--------------------------------HLHSMILWGPPGTGKTTLAEVIA 71 (447)
T ss_dssp TTT-CCSCHHHHSTTSHHHHHHHHT--------------------------------CCCEEEEECSTTSSHHHHHHHHH
T ss_pred HHH-hCCcHHHHhchHHHHHHHHcC--------------------------------CCcEEEEECCCCCcHHHHHHHHH
Confidence 444 89999999 7777777410 01579999999999999999999
Q ss_pred HHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHH
Q 008176 352 RYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (575)
Q Consensus 352 ~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~ 431 (575)
+.++.+++.+++.... ...+++.+..+........++||||||||.+... .|+.|+.
T Consensus 72 ~~~~~~f~~l~a~~~~---------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~ 128 (447)
T 3pvs_A 72 RYANADVERISAVTSG---------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLP 128 (447)
T ss_dssp HHTTCEEEEEETTTCC---------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHH
T ss_pred HHhCCCeEEEEeccCC---------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHH
Confidence 9999999988865422 2234444444433223356889999999999776 7889999
Q ss_pred HhhC
Q 008176 432 MLEG 435 (575)
Q Consensus 432 ~LEg 435 (575)
.||.
T Consensus 129 ~le~ 132 (447)
T 3pvs_A 129 HIED 132 (447)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 9993
No 48
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=1.3e-13 Score=154.10 Aligned_cols=159 Identities=20% Similarity=0.237 Sum_probs=97.0
Q ss_pred hHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHH
Q 008176 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (575)
Q Consensus 268 ~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLA 347 (575)
...+.+.+...|+||+.+|+.+..++..... + .+.+ .......++||+||||||||++|
T Consensus 286 ~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~--------~------------~~~~-~~~r~~~~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 286 RDRIISSIAPSIYGHWELKEALALALFGGVP--------K------------VLED-TRIRGDIHILIIGDPGTAKSQML 344 (595)
T ss_dssp GGTHHHHTSSTTSCCHHHHHHHTTTTTCCCC--------E------------ETTT-TEECCSCCEEEEESSCCTHHHHH
T ss_pred HHHHHHhhcchhcChHHHHHHHHHHHhCCCc--------c------------cccC-CCcCCCcceEEECCCchHHHHHH
Confidence 4457778888999999999887655531100 0 0000 11112348999999999999999
Q ss_pred HHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHH
Q 008176 348 KTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (575)
Q Consensus 348 raLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~ 427 (575)
+++|+.++..++.... .....++.+..........+......+..+.++|+||||||++.++ +|+
T Consensus 345 r~la~~~~r~~~~~~~-~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~--------------~q~ 409 (595)
T 3f9v_A 345 QFISRVAPRAVYTTGK-GSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDE--------------DRV 409 (595)
T ss_dssp HSSSTTCSCEECCCTT-CSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSH--------------HHH
T ss_pred HHHHHhCCCceecCCC-ccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHh--------------Hhh
Confidence 9999988765543211 0111222222211111111111222344567899999999999877 899
Q ss_pred HHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCc
Q 008176 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (575)
Q Consensus 428 aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~ 470 (575)
+|+++||.+.+.+...|.. .....++.+|+|+|..
T Consensus 410 ~Ll~~le~~~i~i~~~g~~--------~~~~~~~~vIaatNp~ 444 (595)
T 3f9v_A 410 AIHEAMEQQTVSIAKAGIV--------AKLNARAAVIAAGNPK 444 (595)
T ss_dssp HHHHHHHSSSEEEESSSSE--------EEECCCCEEEEEECCT
T ss_pred hhHHHHhCCEEEEecCCcE--------EEecCceEEEEEcCCc
Confidence 9999999777665332321 1223567888998853
No 49
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.41 E-value=7.4e-13 Score=152.82 Aligned_cols=172 Identities=23% Similarity=0.364 Sum_probs=122.4
Q ss_pred hcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 275 Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
+++ |+|++++++.|.+.+...... ++.++...+. ++.++||+||||||||++|+++|+.+
T Consensus 203 ~~d-i~G~~~~~~~l~e~i~~~l~~------------------~~~~~~l~i~-~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 203 YDD-VGGCRKQLAQIKEMVELPLRH------------------PALFKAIGVK-PPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGG-CCSCSGGGGHHHHHHHHHHHC------------------GGGGTSSCCC-CCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred HHH-hCChHHHHHHHHHHHHHHhhC------------------HHHHHhcCCC-CCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 444 899999999999999643321 1111222222 23689999999999999999999999
Q ss_pred CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 355 ~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
+.+++.+++.++. ..+.|+. ...+...|..+. ...++++||||+|.+...+.. .......++++.|+.+|+
T Consensus 263 ~~~~i~v~~~~l~-~~~~g~~-~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~---~~~~~~~~~~~~Ll~ll~ 333 (806)
T 1ypw_A 263 GAFFFLINGPEIM-SKLAGES-ESNLRKAFEEAE----KNAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMD 333 (806)
T ss_dssp TCEEEEEEHHHHS-SSSTTHH-HHHHHHHHHHHH----HHCSEEEEEESGGGTSCTTSC---CCSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEchHhh-hhhhhhH-HHHHHHHHHHHH----hcCCcEEEeccHHHhhhcccc---ccchHHHHHHHHHHHHhh
Confidence 9999999998876 3466765 666777777654 246899999999999876432 222333558899999999
Q ss_pred CCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC-hHHHHHh-hhcccCCCCCCchhhh
Q 008176 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (575)
Q Consensus 435 g~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d-L~~~i~~-rr~~~~IgF~~p~~e~ 494 (575)
|.. ...++++|+++|..+ ++..+++ .+|+..++++.|+.+.
T Consensus 334 g~~-------------------~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~ 376 (806)
T 1ypw_A 334 GLK-------------------QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376 (806)
T ss_dssp SSC-------------------TTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHH
T ss_pred hhc-------------------ccccEEEecccCCchhcCHHHhcccccccccccCCCCHHH
Confidence 521 123567778877764 6555544 4788888888887654
No 50
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.41 E-value=1.9e-13 Score=125.68 Aligned_cols=115 Identities=24% Similarity=0.280 Sum_probs=74.1
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
.++|++++++.+...+.. ..+.+++|+||||||||++|+++++.+
T Consensus 23 ~~~g~~~~~~~l~~~l~~--------------------------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 70 (195)
T 1jbk_A 23 PVIGRDEEIRRTIQVLQR--------------------------------RTKNNPVLIGEPGVGKTAIVEGLAQRIING 70 (195)
T ss_dssp CCCSCHHHHHHHHHHHTS--------------------------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHhc--------------------------------CCCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 479999999998887731 012689999999999999999999886
Q ss_pred -------CCCEEEeccccccc-cccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHH
Q 008176 355 -------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (575)
Q Consensus 355 -------~~~fv~v~~s~l~~-sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq 426 (575)
+.+++.+++..+.. ..+.+.. ...+...+.... ....+.||+|||+|.+...+... .. ..++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~vl~iDe~~~l~~~~~~~-~~-----~~~~ 140 (195)
T 1jbk_A 71 EVPEGLKGRRVLALDMGALVAGAKYRGEF-EERLKGVLNDLA---KQEGNVILFIDELHTMVGAGKAD-GA-----MDAG 140 (195)
T ss_dssp CSCGGGTTCEEEEECHHHHHTTTCSHHHH-HHHHHHHHHHHH---HSTTTEEEEEETGGGGTT-------C-----CCCH
T ss_pred CCchhhcCCcEEEeeHHHHhccCCccccH-HHHHHHHHHHHh---hcCCCeEEEEeCHHHHhccCccc-ch-----HHHH
Confidence 67788888876532 2233332 333444433221 12346699999999997653210 01 1156
Q ss_pred HHHHHHhh
Q 008176 427 QALLKMLE 434 (575)
Q Consensus 427 ~aLL~~LE 434 (575)
+.|..+++
T Consensus 141 ~~l~~~~~ 148 (195)
T 1jbk_A 141 NMLKPALA 148 (195)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 77777776
No 51
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.40 E-value=2.2e-12 Score=133.32 Aligned_cols=62 Identities=23% Similarity=0.370 Sum_probs=45.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCC-
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~- 356 (575)
.++|++.+++.+..++..... .. .+..++||+||||||||++|+++|+.++.
T Consensus 45 ~ivG~~~~~~~l~~l~~~~~~-----~~----------------------~~~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEMIRE-----GK----------------------IAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp TEESCHHHHHHHHHHHHHHHT-----TC----------------------CTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred hccChHHHHHHHHHHHHHHHc-----CC----------------------CCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 379999999987765531110 00 11258999999999999999999999864
Q ss_pred -CEEEeccccc
Q 008176 357 -PFVIADATTL 366 (575)
Q Consensus 357 -~fv~v~~s~l 366 (575)
+++.+++..+
T Consensus 98 ~~~~~~~~~~~ 108 (368)
T 3uk6_A 98 TPFTAIAGSEI 108 (368)
T ss_dssp CCEEEEEGGGG
T ss_pred CCcccccchhh
Confidence 7888877653
No 52
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.40 E-value=9e-13 Score=144.59 Aligned_cols=124 Identities=19% Similarity=0.205 Sum_probs=82.9
Q ss_pred hHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHH
Q 008176 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (575)
Q Consensus 268 ~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLA 347 (575)
...+.+.+.+.|+|++++++.+..++. ...++||+||||||||++|
T Consensus 13 ~~~l~~~l~~~ivGq~~~i~~l~~al~----------------------------------~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 13 ISRLSSSLEKGLYERSHAIRLCLLAAL----------------------------------SGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHTTCSSCHHHHHHHHHHHH----------------------------------HTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHh----------------------------------cCCeeEeecCchHHHHHHH
Confidence 356788888999999999998887774 1368999999999999999
Q ss_pred HHHHHHhC--CCEEEeccccccccccccchhhhHH--HHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchH
Q 008176 348 KTLARYVN--VPFVIADATTLTQAGYVGEDVESIL--YKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (575)
Q Consensus 348 raLA~~l~--~~fv~v~~s~l~~sg~vGe~~~~~l--~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e 423 (575)
+++|+.++ .+|..+.+.-.....+.|....... ...+..+... ....++|||||||+++.++
T Consensus 59 raLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g-~l~~~~IL~IDEI~r~~~~------------- 124 (500)
T 3nbx_X 59 RRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSG-YLPEAEIVFLDEIWKAGPA------------- 124 (500)
T ss_dssp HHGGGGBSSCCEEEEECCTTCCHHHHHCCBC----------CBCCTT-SGGGCSEEEEESGGGCCHH-------------
T ss_pred HHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhcc-CCCcceeeeHHhHhhhcHH-------------
Confidence 99999884 3555555542222233332101000 1112211110 0124679999999998876
Q ss_pred HHHHHHHHHhhCCeecc
Q 008176 424 GVQQALLKMLEGTVVNV 440 (575)
Q Consensus 424 ~vq~aLL~~LEg~~v~v 440 (575)
+|+.|+++|+++.+.+
T Consensus 125 -~q~~LL~~lee~~v~i 140 (500)
T 3nbx_X 125 -ILNTLLTAINERQFRN 140 (500)
T ss_dssp -HHHHHHHHHHSSEEEC
T ss_pred -HHHHHHHHHHHHhccC
Confidence 9999999999776654
No 53
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.40 E-value=1.9e-12 Score=139.79 Aligned_cols=102 Identities=26% Similarity=0.324 Sum_probs=72.1
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC--
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~-- 355 (575)
.|+||+++++.+..++..... .. .+++++||+||||||||++|+++|+.++
T Consensus 38 ~iiG~~~~~~~l~~~~~~~~~----~~-----------------------~~~~~iLl~GppGtGKT~la~ala~~l~~~ 90 (456)
T 2c9o_A 38 GLVGQENAREACGVIVELIKS----KK-----------------------MAGRAVLLAGPPGTGKTALALAIAQELGSK 90 (456)
T ss_dssp TEESCHHHHHHHHHHHHHHHT----TC-----------------------CTTCEEEEECCTTSSHHHHHHHHHHHHCTT
T ss_pred hccCHHHHHHHHHHHHHHHHh----CC-----------------------CCCCeEEEECCCcCCHHHHHHHHHHHhCCC
Confidence 589999999998887741110 00 1236899999999999999999999998
Q ss_pred CCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHh
Q 008176 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (575)
Q Consensus 356 ~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~ 410 (575)
.+|+.++++++. ..++|+. +. +++.|..+.. .....++||||||+|.+..+
T Consensus 91 ~~~~~~~~~~~~-~~~~~~~-~~-~~~~f~~a~~-~~~~~~~il~iDEid~l~~~ 141 (456)
T 2c9o_A 91 VPFCPMVGSEVY-STEIKKT-EV-LMENFRRAIG-LRIKETKEVYEGEVTELTPC 141 (456)
T ss_dssp SCEEEEEGGGGC-CSSSCHH-HH-HHHHHHHTEE-EEEEEEEEEEEEEEEEEEEC
T ss_pred ceEEEEeHHHHH-HHhhhhh-HH-HHHHHHHHHh-hhhcCCcEEEEechhhcccc
Confidence 899999999877 4577775 33 6666665511 01134566666666655543
No 54
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.39 E-value=2.5e-12 Score=131.66 Aligned_cols=147 Identities=20% Similarity=0.309 Sum_probs=87.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEE----eccccccc----------------------------cccccchhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI----ADATTLTQ----------------------------AGYVGEDVES 378 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~----v~~s~l~~----------------------------sg~vGe~~~~ 378 (575)
+++||+||||||||++|+++++.++..... ++|..... ..+.|..
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--- 122 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--- 122 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE---
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeec---
Confidence 579999999999999999999988631100 12221110 0112210
Q ss_pred HHHHHhhhc-----hhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCc
Q 008176 379 ILYKLLTVS-----DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDN 453 (575)
Q Consensus 379 ~l~~lf~~a-----~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ 453 (575)
.+...+..+ ...+..+.++||||||++.+..+ +++.|+..|+.....+...+. .
T Consensus 123 ~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~--------------~~~~Ll~~le~~~~~~~~~g~-------~ 181 (350)
T 1g8p_A 123 DIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH--------------IVDLLLDVAQSGENVVERDGL-------S 181 (350)
T ss_dssp CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH--------------HHHHHHHHHHHSEEEECCTTC-------C
T ss_pred hhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH--------------HHHHHHHHHhcCceEEEecce-------E
Confidence 001111111 11223456889999999999877 899999999965433322111 1
Q ss_pred ceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhhccCCCChHHHHHHHHhhhcchhhhhcCCCCccccccce
Q 008176 454 IQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV 533 (575)
Q Consensus 454 ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ 533 (575)
.....++++|+++|..+ ..+.+.+++||+.
T Consensus 182 -~~~~~~~~li~~~n~~~-------------------------------------------------~~l~~~L~~R~~~ 211 (350)
T 1g8p_A 182 -IRHPARFVLVGSGNPEE-------------------------------------------------GDLRPQLLDRFGL 211 (350)
T ss_dssp -EEEECCEEEEEEECSCS-------------------------------------------------CCCCHHHHTTCSE
T ss_pred -EeeCCceEEEEEeCCCC-------------------------------------------------CCCCHHHHhhcce
Confidence 11234688888887411 0155777888888
Q ss_pred EEEcCCC-CHHHHHHHHhh
Q 008176 534 LVSLLAL-TENQLVQVLTE 551 (575)
Q Consensus 534 ii~~~~L-sedeL~eIl~e 551 (575)
.+.+..+ +.++..+|+..
T Consensus 212 ~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 212 SVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp EEECCCCCSHHHHHHHHHH
T ss_pred EEEcCCCCcHHHHHHHHHH
Confidence 7888888 45555566653
No 55
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.34 E-value=1.1e-11 Score=116.56 Aligned_cols=105 Identities=28% Similarity=0.384 Sum_probs=70.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
.++|++++++.+...+... ...+++|+||+|||||++|+++++.+
T Consensus 18 ~~~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVERK--------------------------------NIPHLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp GCCSCHHHHHHHHHHHHTT--------------------------------CCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred HHcCcHHHHHHHHHHHhCC--------------------------------CCCeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3799999999998888510 11469999999999999999999875
Q ss_pred --CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHH
Q 008176 355 --NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (575)
Q Consensus 355 --~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~ 432 (575)
...++.+++....... .....+....... ......+.||+|||+|.+... .++.|+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~vliiDe~~~l~~~--------------~~~~l~~~ 125 (226)
T 2chg_A 66 NWRDNFIEMNASDERGID----VVRHKIKEFARTA--PIGGAPFKIIFLDEADALTAD--------------AQAALRRT 125 (226)
T ss_dssp GGGGGEEEEETTCTTCHH----HHHHHHHHHHTSC--CSTTCSCEEEEEETGGGSCHH--------------HHHHHHHH
T ss_pred ccccceEEeccccccChH----HHHHHHHHHhccc--CCCccCceEEEEeChhhcCHH--------------HHHHHHHH
Confidence 3457777765533110 0111122211110 011246789999999999776 78889999
Q ss_pred hh
Q 008176 433 LE 434 (575)
Q Consensus 433 LE 434 (575)
++
T Consensus 126 l~ 127 (226)
T 2chg_A 126 ME 127 (226)
T ss_dssp HH
T ss_pred HH
Confidence 98
No 56
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.33 E-value=4.1e-13 Score=122.46 Aligned_cols=97 Identities=18% Similarity=0.286 Sum_probs=72.8
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
.++|++++++.+.+.+...- ....++||+||||||||++|+++++... +
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~------------------------------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~ 53 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA------------------------------KRTSPVFLTGEAGSPFETVARYFHKNGT-P 53 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH------------------------------TCSSCEEEEEETTCCHHHHHGGGCCTTS-C
T ss_pred CceeCCHHHHHHHHHHHHHh------------------------------CCCCcEEEECCCCccHHHHHHHHHHhCC-C
Confidence 47999999999988885110 0136899999999999999999998887 9
Q ss_pred EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
++.++|+++... + ....+.. +.+++|||||+|.+..+ .|+.|+++|+.
T Consensus 54 ~~~~~~~~~~~~-~--------~~~~~~~-------a~~~~l~lDei~~l~~~--------------~q~~Ll~~l~~ 101 (143)
T 3co5_A 54 WVSPARVEYLID-M--------PMELLQK-------AEGGVLYVGDIAQYSRN--------------IQTGITFIIGK 101 (143)
T ss_dssp EECCSSTTHHHH-C--------HHHHHHH-------TTTSEEEEEECTTCCHH--------------HHHHHHHHHHH
T ss_pred eEEechhhCChH-h--------hhhHHHh-------CCCCeEEEeChHHCCHH--------------HHHHHHHHHHh
Confidence 999998875421 1 2223322 35789999999999877 89999999983
No 57
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.28 E-value=1e-11 Score=143.82 Aligned_cols=164 Identities=23% Similarity=0.301 Sum_probs=97.4
Q ss_pred hhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
.++. |+|+++.++.+...+... .+.+++|+||||||||++|+++|+.
T Consensus 168 ~ld~-viGr~~~i~~l~~~l~~~--------------------------------~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 168 KLDP-VIGRDEEIRRVIQILLRR--------------------------------TKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CSCC-CCSCHHHHHHHHHHHHCS--------------------------------SCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCcc-cCCcHHHHHHHHHHHhcC--------------------------------CCCceEEEcCCCCCHHHHHHHHHHH
Confidence 3444 799999999988877410 1257999999999999999999988
Q ss_pred h----------CCCEEEeccccccc-cccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcch
Q 008176 354 V----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (575)
Q Consensus 354 l----------~~~fv~v~~s~l~~-sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~ 422 (575)
+ +.+++.++++.+.. ..+.|+. ...+..++..... ...++||||||+|.+...... ...
T Consensus 215 l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~-~~~l~~~~~~~~~---~~~~~iL~IDEi~~l~~~~~~------~g~ 284 (854)
T 1qvr_A 215 IVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEF-EERLKAVIQEVVQ---SQGEVILFIDELHTVVGAGKA------EGA 284 (854)
T ss_dssp HHHTCSCTTSTTCEEEEECC-----------CH-HHHHHHHHHHHHT---TCSSEEEEECCC------------------
T ss_pred HhcCCCchhhcCCeEEEeehHHhhccCccchHH-HHHHHHHHHHHHh---cCCCeEEEEecHHHHhccCCc------cch
Confidence 7 78899999988652 3466654 5556666654431 124679999999999865321 111
Q ss_pred HHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcccCCCCCCchhhhhccCCCCh
Q 008176 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTD 502 (575)
Q Consensus 423 e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~~~IgF~~p~~e~~~~~~l~~ 502 (575)
..+.+.|..+++. .++.+|++++..+.
T Consensus 285 ~~~~~~L~~~l~~-----------------------~~i~~I~at~~~~~------------------------------ 311 (854)
T 1qvr_A 285 VDAGNMLKPALAR-----------------------GELRLIGATTLDEY------------------------------ 311 (854)
T ss_dssp -------HHHHHT-----------------------TCCCEEEEECHHHH------------------------------
T ss_pred HHHHHHHHHHHhC-----------------------CCeEEEEecCchHH------------------------------
Confidence 2267778888872 12445666653211
Q ss_pred HHHHHHHHhhhcchhhhhcCCCCccccccceEEEcCCCCHHHHHHHHh
Q 008176 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQVLT 550 (575)
Q Consensus 503 ~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~~ii~~~~LsedeL~eIl~ 550 (575)
.. + ...+.+..||.. +.+..++.++..+|+.
T Consensus 312 -------~~-~--------~~d~aL~rRf~~-i~l~~p~~~e~~~iL~ 342 (854)
T 1qvr_A 312 -------RE-I--------EKDPALERRFQP-VYVDEPTVEETISILR 342 (854)
T ss_dssp -------HH-H--------TTCTTTCSCCCC-EEECCCCHHHHHHHHH
T ss_pred -------hh-h--------ccCHHHHhCCce-EEeCCCCHHHHHHHHH
Confidence 00 1 145788889986 8899999999999986
No 58
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.26 E-value=1.1e-11 Score=130.74 Aligned_cols=125 Identities=25% Similarity=0.414 Sum_probs=82.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCC--EEEecccccccc----ccccchhhhHHHHHhhhchhhHHhhccCeEeehhH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVP--FVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~--fv~v~~s~l~~s----g~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEI 404 (575)
.++++.|++||||+++|+++....+.. |+.++|..+.+. .+.|+. ...++.........+..+.+++||||||
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~-~g~~tga~~~~~g~~~~a~~gtlfldei 231 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHE-KGAFTGALTRKKGKLELADQGTLFLDEV 231 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEEC-SCSSSSCCCCEECHHHHTTTSEEEEETG
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCcc-ccccCCcccccCChHhhcCCCeEEecCh
Confidence 579999999999999999999887543 999999986532 111211 0111111111223355678899999999
Q ss_pred hhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhc
Q 008176 405 DKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQ 481 (575)
Q Consensus 405 D~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~ 481 (575)
+.++.. +|..|+++|+.+.+.- .+.... ...++.+|++++ .++.+.+..++|
T Consensus 232 ~~l~~~--------------~Q~~Ll~~l~~~~~~~-------~g~~~~---~~~~~rii~at~-~~l~~~v~~g~f 283 (368)
T 3dzd_A 232 GELDQR--------------VQAKLLRVLETGSFTR-------LGGNQK---IEVDIRVISATN-KNLEEEIKKGNF 283 (368)
T ss_dssp GGSCHH--------------HHHHHHHHHHHSEECC-------BTCCCB---EECCCEEEEEES-SCHHHHHHTTSS
T ss_pred hhCCHH--------------HHHHHHHHHHhCCccc-------CCCCcc---eeeeeEEEEecC-CCHHHHHHcCCc
Confidence 999988 9999999999544321 111111 133578888888 567777765544
No 59
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.25 E-value=5e-12 Score=116.32 Aligned_cols=116 Identities=26% Similarity=0.319 Sum_probs=74.5
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
.++|++++++.+...+.. ....+++|+||||||||++|+++++.+
T Consensus 23 ~~~g~~~~~~~l~~~l~~--------------------------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~ 70 (187)
T 2p65_A 23 PVIGRDTEIRRAIQILSR--------------------------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQG 70 (187)
T ss_dssp CCCSCHHHHHHHHHHHTS--------------------------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTT
T ss_pred hhhcchHHHHHHHHHHhC--------------------------------CCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 479999999888877630 012689999999999999999999887
Q ss_pred -------CCCEEEeccccccc-cccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHH
Q 008176 355 -------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (575)
Q Consensus 355 -------~~~fv~v~~s~l~~-sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq 426 (575)
+.+++.+++..+.. ..+.+.. ...+...+.... ....+.||+|||+|.+...+...... ..++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~vl~iDe~~~l~~~~~~~~~~-----~~~~ 141 (187)
T 2p65_A 71 DVPDSLKGRKLVSLDLSSLIAGAKYRGDF-EERLKSILKEVQ---DAEGQVVMFIDEIHTVVGAGAVAEGA-----LDAG 141 (187)
T ss_dssp CSCTTTTTCEEEEECHHHHHHHCCSHHHH-HHHHHHHHHHHH---HTTTSEEEEETTGGGGSSSSSSCTTS-----CCTH
T ss_pred CCcchhcCCeEEEEeHHHhhcCCCchhHH-HHHHHHHHHHHH---hcCCceEEEEeCHHHhcccccccccc-----hHHH
Confidence 66777777765432 1122322 233333333221 11246799999999997442210001 1167
Q ss_pred HHHHHHhh
Q 008176 427 QALLKMLE 434 (575)
Q Consensus 427 ~aLL~~LE 434 (575)
+.|+.+++
T Consensus 142 ~~l~~~~~ 149 (187)
T 2p65_A 142 NILKPMLA 149 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77888777
No 60
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.24 E-value=9.5e-11 Score=110.98 Aligned_cols=112 Identities=28% Similarity=0.300 Sum_probs=66.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
.++|++++++.|...+... + .++.++|+||+|+|||++|+++++.+...
T Consensus 24 ~~~g~~~~~~~l~~~l~~~----------~---------------------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 24 DVVGQEHVLTALANGLSLG----------R---------------------IHHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp GCCSCHHHHHHHHHHHHHT----------C---------------------CCSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred HHhCcHHHHHHHHHHHHcC----------C---------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4799999999998887410 0 11468899999999999999999877432
Q ss_pred EEE--eccc--------------cccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcc
Q 008176 358 FVI--ADAT--------------TLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVS 421 (575)
Q Consensus 358 fv~--v~~s--------------~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~ 421 (575)
... ..+. ++.............+..++...........+.+|+|||+|.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~----------- 141 (250)
T 1njg_A 73 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH----------- 141 (250)
T ss_dssp TCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH-----------
T ss_pred CCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH-----------
Confidence 100 0000 0000000000011223333333211111235689999999998765
Q ss_pred hHHHHHHHHHHhh
Q 008176 422 GEGVQQALLKMLE 434 (575)
Q Consensus 422 ~e~vq~aLL~~LE 434 (575)
.++.|++.++
T Consensus 142 ---~~~~l~~~l~ 151 (250)
T 1njg_A 142 ---SFNALLKTLE 151 (250)
T ss_dssp ---HHHHHHHHHH
T ss_pred ---HHHHHHHHHh
Confidence 7889999998
No 61
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.24 E-value=1.2e-11 Score=134.26 Aligned_cols=135 Identities=24% Similarity=0.326 Sum_probs=81.7
Q ss_pred hcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 275 Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
++. |+|+++.++.+...+.. ..+.++||+||||||||++|+++|+.+
T Consensus 179 ld~-iiGr~~~i~~l~~~l~r--------------------------------~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 179 LDP-VIGRSKEIQRVIEVLSR--------------------------------RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SCC-CCCCHHHHHHHHHHHHC--------------------------------SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCC-ccCcHHHHHHHHHHHhc--------------------------------cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 444 89999999999888751 013689999999999999999999986
Q ss_pred ----------CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHH
Q 008176 355 ----------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (575)
Q Consensus 355 ----------~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~ 424 (575)
+.+++.+++. ..|.|+. +..+..++.... ...++||||| ... .
T Consensus 226 ~~~~~p~~l~~~~~~~l~~~----~~~~g~~-e~~~~~~~~~~~----~~~~~iLfiD----~~~--------------~ 278 (468)
T 3pxg_A 226 INNEVPEILRDKRVMTLDMG----TKYRGEF-EDRLKKVMDEIR----QAGNIILFID----AAI--------------D 278 (468)
T ss_dssp HSSCSCTTTSSCCEECC---------------CTTHHHHHHHHH----TCCCCEEEEC----C-----------------
T ss_pred HhCCCChhhcCCeEEEeeCC----ccccchH-HHHHHHHHHHHH----hcCCeEEEEe----Cch--------------h
Confidence 7778888876 3356653 445555555433 2467899999 111 1
Q ss_pred HHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC------hHHHHHhhhcccCCCCCCchhhh
Q 008176 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD------IEKTISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 425 vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d------L~~~i~~rr~~~~IgF~~p~~e~ 494 (575)
+++.|+..|+. .++.+|+++|..+ ++..+.+ ||. .|.|+.|+.+.
T Consensus 279 a~~~L~~~L~~-----------------------g~v~vI~at~~~e~~~~~~~~~al~~-Rf~-~i~v~~p~~e~ 329 (468)
T 3pxg_A 279 ASNILKPSLAR-----------------------GELQCIGATTLDEYRKYIEKDAALER-RFQ-PIQVDQPSVDE 329 (468)
T ss_dssp -----CCCTTS-----------------------SSCEEEEECCTTTTHHHHTTCSHHHH-SEE-EEECCCCCHHH
T ss_pred HHHHHHHhhcC-----------------------CCEEEEecCCHHHHHHHhhcCHHHHH-hCc-cceeCCCCHHH
Confidence 67778777762 1366788888765 3334433 444 36666665443
No 62
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.22 E-value=2.9e-11 Score=128.09 Aligned_cols=128 Identities=16% Similarity=0.319 Sum_probs=84.9
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHh---CCCEEEecccccccc----ccccchhhhHHHHHhhhchhhHHhhccCeEeeh
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYID 402 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~s----g~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfID 402 (575)
..++++.|++||||+++|++++... +.+|+.++|+.+.+. .+.|.. ...+..........+..+++|+||||
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~-~g~~tga~~~~~g~~~~a~~gtlfld 238 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYE-KGAFTGAVSSKEGFFELADGGTLFLD 238 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBC-TTSSTTCCSCBCCHHHHTTTSEEEEE
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCC-CCCCCCcccccCCceeeCCCcEEEEc
Confidence 3578999999999999999999876 478999999986531 122221 00111111111223455788999999
Q ss_pred hHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcChHHHHHhhhcc
Q 008176 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (575)
Q Consensus 403 EID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL~~~i~~rr~~ 482 (575)
||+.++.. +|..|+++|+.+.+.- .+... ....++.+|+++| .++++.+..++|+
T Consensus 239 ei~~l~~~--------------~q~~Ll~~l~~~~~~~-------~g~~~---~~~~~~rii~at~-~~l~~~~~~g~fr 293 (387)
T 1ny5_A 239 EIGELSLE--------------AQAKLLRVIESGKFYR-------LGGRK---EIEVNVRILAATN-RNIKELVKEGKFR 293 (387)
T ss_dssp SGGGCCHH--------------HHHHHHHHHHHSEECC-------BTCCS---BEECCCEEEEEES-SCHHHHHHTTSSC
T ss_pred ChhhCCHH--------------HHHHHHHHHhcCcEEe-------CCCCc---eeeccEEEEEeCC-CCHHHHHHcCCcc
Confidence 99999987 9999999999544321 11111 1234578888888 4677777766554
Q ss_pred c
Q 008176 483 S 483 (575)
Q Consensus 483 ~ 483 (575)
.
T Consensus 294 ~ 294 (387)
T 1ny5_A 294 E 294 (387)
T ss_dssp H
T ss_pred H
Confidence 3
No 63
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.22 E-value=5.4e-11 Score=119.95 Aligned_cols=106 Identities=28% Similarity=0.367 Sum_probs=71.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC--
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~-- 355 (575)
.++|++++++.|..++... ...++||+||||||||++|+++++.+.
T Consensus 26 ~~~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~ 73 (327)
T 1iqp_A 26 DIVGQEHIVKRLKHYVKTG--------------------------------SMPHLLFAGPPGVGKTTAALALARELFGE 73 (327)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------------------------------CCCEEEEESCTTSSHHHHHHHHHHHHHGG
T ss_pred HhhCCHHHHHHHHHHHHcC--------------------------------CCCeEEEECcCCCCHHHHHHHHHHHhcCC
Confidence 4899999999999887510 014699999999999999999998863
Q ss_pred ---CCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHH
Q 008176 356 ---VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (575)
Q Consensus 356 ---~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~ 432 (575)
..++.+++++..... .....+....... ......+.||+|||+|.+... .+++|++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~vliiDe~~~l~~~--------------~~~~L~~~ 133 (327)
T 1iqp_A 74 NWRHNFLELNASDERGIN----VIREKVKEFARTK--PIGGASFKIIFLDEADALTQD--------------AQQALRRT 133 (327)
T ss_dssp GHHHHEEEEETTCHHHHH----TTHHHHHHHHHSC--CGGGCSCEEEEEETGGGSCHH--------------HHHHHHHH
T ss_pred cccCceEEeeccccCchH----HHHHHHHHHHhhC--CcCCCCCeEEEEeCCCcCCHH--------------HHHHHHHH
Confidence 236667765432110 0111122211111 111245789999999999876 79999999
Q ss_pred hhC
Q 008176 433 LEG 435 (575)
Q Consensus 433 LEg 435 (575)
|+.
T Consensus 134 le~ 136 (327)
T 1iqp_A 134 MEM 136 (327)
T ss_dssp HHH
T ss_pred HHh
Confidence 983
No 64
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=1.3e-11 Score=126.26 Aligned_cols=108 Identities=24% Similarity=0.309 Sum_probs=71.0
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC--
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~-- 355 (575)
.++|++++++.|..++... ..+++||+||||||||++|+++++.++
T Consensus 38 ~i~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKT~la~~la~~l~~~ 85 (353)
T 1sxj_D 38 EVTAQDHAVTVLKKTLKSA--------------------------------NLPHMLFYGPPGTGKTSTILALTKELYGP 85 (353)
T ss_dssp TCCSCCTTHHHHHHHTTCT--------------------------------TCCCEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHhcC--------------------------------CCCEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4899999999988777300 114699999999999999999998763
Q ss_pred ----CCEEEeccccccccccccchhhhHHHHHhhhchh--------hHHhhccCeEeehhHhhhhHhhhhcccCCCcchH
Q 008176 356 ----VPFVIADATTLTQAGYVGEDVESILYKLLTVSDY--------NVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (575)
Q Consensus 356 ----~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~--------~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e 423 (575)
..++.+++++....+.+.+ .+......... ........||+|||+|.+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~------------- 148 (353)
T 1sxj_D 86 DLMKSRILELNASDERGISIVRE----KVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD------------- 148 (353)
T ss_dssp HHHTTSEEEECSSSCCCHHHHTT----HHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-------------
T ss_pred cccccceEEEccccccchHHHHH----HHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-------------
Confidence 4577788766432111111 11111100000 000124569999999999876
Q ss_pred HHHHHHHHHhhC
Q 008176 424 GVQQALLKMLEG 435 (575)
Q Consensus 424 ~vq~aLL~~LEg 435 (575)
.+++|++.|++
T Consensus 149 -~~~~Ll~~le~ 159 (353)
T 1sxj_D 149 -AQSALRRTMET 159 (353)
T ss_dssp -HHHHHHHHHHH
T ss_pred -HHHHHHHHHHh
Confidence 78999999983
No 65
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.20 E-value=8.5e-11 Score=128.83 Aligned_cols=131 Identities=18% Similarity=0.182 Sum_probs=78.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
.|+|++++++.|..++.............. |.. -.....++||+||||||||++|+++|+.++.+
T Consensus 40 dliG~~~~~~~L~~~l~~~~~~~~~~~~~~---g~~------------~~~~~~~lLL~GppGtGKTtla~~la~~l~~~ 104 (516)
T 1sxj_A 40 QVCGNKGSVMKLKNWLANWENSKKNSFKHA---GKD------------GSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD 104 (516)
T ss_dssp GCCSCHHHHHHHHHHHHTHHHHHHTTTCCC---CTT------------STTSCSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred HhcCCHHHHHHHHHHHHHhHhhchhhcccc---Ccc------------CCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 389999999999999863222110000000 000 00123689999999999999999999999999
Q ss_pred EEEeccccccccccccchhhh-----HHHHHhhhchh-hHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHH
Q 008176 358 FVIADATTLTQAGYVGEDVES-----ILYKLLTVSDY-NVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (575)
Q Consensus 358 fv~v~~s~l~~sg~vGe~~~~-----~l~~lf~~a~~-~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~ 431 (575)
++.+++++......+...... .+...+..+.. ......++||||||+|.+..... ...+.|+.
T Consensus 105 ~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~-----------~~l~~L~~ 173 (516)
T 1sxj_A 105 ILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR-----------GGVGQLAQ 173 (516)
T ss_dssp EEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST-----------THHHHHHH
T ss_pred EEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH-----------HHHHHHHH
Confidence 999999876532111110000 01111111100 00124578999999999976411 14678888
Q ss_pred Hhh
Q 008176 432 MLE 434 (575)
Q Consensus 432 ~LE 434 (575)
+++
T Consensus 174 ~l~ 176 (516)
T 1sxj_A 174 FCR 176 (516)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
No 66
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.19 E-value=4.7e-11 Score=124.05 Aligned_cols=167 Identities=14% Similarity=0.154 Sum_probs=104.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
.+.|+++..+.|...+..... . -.+.+++|+||||||||++++.+++.+
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~----~------------------------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM----S------------------------SQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----T------------------------TCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHHhc----C------------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 478888888888877752221 0 123689999999999999999999888
Q ss_pred -------CCCEEEeccccccccc---------cccch-----hhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 355 -------NVPFVIADATTLTQAG---------YVGED-----VESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 355 -------~~~fv~v~~s~l~~sg---------~vGe~-----~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
...++.++|..+.... +.|+. ....+...|..... ....+.||+|||+|.+. ..
T Consensus 73 ~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~--~~~~~~ii~lDE~d~l~-~q-- 147 (318)
T 3te6_A 73 SARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPK--AKKRKTLILIQNPENLL-SE-- 147 (318)
T ss_dssp TTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCG--GGSCEEEEEEECCSSSC-CT--
T ss_pred hhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhh--ccCCceEEEEecHHHhh-cc--
Confidence 2457889987754310 11211 12334444443210 12356899999999997 20
Q ss_pred cccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcCh-HHHHHhhhcccCCCCCCchh
Q 008176 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EKTISERRQDSSIGFGAPVR 492 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~dL-~~~i~~rr~~~~IgF~~p~~ 492 (575)
.+...|+++.+ ....++.+|+.+|..++ +..+
T Consensus 148 ----------~~L~~l~~~~~---------------------~~~s~~~vI~i~n~~d~~~~~L---------------- 180 (318)
T 3te6_A 148 ----------KILQYFEKWIS---------------------SKNSKLSIICVGGHNVTIREQI---------------- 180 (318)
T ss_dssp ----------HHHHHHHHHHH---------------------CSSCCEEEEEECCSSCCCHHHH----------------
T ss_pred ----------hHHHHHHhccc---------------------ccCCcEEEEEEecCcccchhhc----------------
Confidence 14444444333 13456788888876542 1111
Q ss_pred hhhccCCCChHHHHHHHHhhhcchhhhhcCCCCccccccc-eEEEcCCCCHHHHHHHHhhhHHH
Q 008176 493 ANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTENQLVQVLTEPKNA 555 (575)
Q Consensus 493 e~~~~~~l~~~~~~~~ll~~l~~~dl~~~gl~Pefi~Rf~-~ii~~~~LsedeL~eIl~e~l~~ 555 (575)
.+.+.+|+. ..+.|.+|+.+|+.+|++..+..
T Consensus 181 -------------------------------~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 181 -------------------------------NIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp -------------------------------HTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred -------------------------------chhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 134445664 57899999999999999854433
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.18 E-value=3.5e-11 Score=137.45 Aligned_cols=136 Identities=24% Similarity=0.323 Sum_probs=85.1
Q ss_pred hhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
.++. |+|+++.++.+...+.. ..+.++||+||||||||++|+++|+.
T Consensus 178 ~ld~-iiG~~~~i~~l~~~l~~--------------------------------~~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 178 SLDP-VIGRSKEIQRVIEVLSR--------------------------------RTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CSCC-CCCCHHHHHHHHHHHHC--------------------------------SSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCC-ccCchHHHHHHHHHHhC--------------------------------CCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3444 89999999999988751 01368999999999999999999998
Q ss_pred h----------CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchH
Q 008176 354 V----------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (575)
Q Consensus 354 l----------~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e 423 (575)
+ +.+++.+++ ...|.|+. +..++..+..+. ...++||||| ...
T Consensus 225 l~~~~~p~~l~~~~~~~~~~----g~~~~G~~-e~~l~~~~~~~~----~~~~~iLfiD----~~~-------------- 277 (758)
T 3pxi_A 225 IINNEVPEILRDKRVMTLDM----GTKYRGEF-EDRLKKVMDEIR----QAGNIILFID----AAI-------------- 277 (758)
T ss_dssp HHSSCSCTTTSSCCEECC---------------CTTHHHHHHHHH----TCCCCEEEEC----C----------------
T ss_pred HhcCCCChhhcCCeEEEecc----cccccchH-HHHHHHHHHHHH----hcCCEEEEEc----Cch--------------
Confidence 7 777887777 24466764 566677766543 2468999999 111
Q ss_pred HHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCcC------hHHHHHhhhcccCCCCCCchhhh
Q 008176 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD------IEKTISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 424 ~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~d------L~~~i~~rr~~~~IgF~~p~~e~ 494 (575)
.+++.|+..|+. .++.+|+++|..+ ++.++.+ || ..|.|+.|+.+.
T Consensus 278 ~~~~~L~~~l~~-----------------------~~v~~I~at~~~~~~~~~~~d~al~r-Rf-~~i~v~~p~~~~ 329 (758)
T 3pxi_A 278 DASNILKPSLAR-----------------------GELQCIGATTLDEYRKYIEKDAALER-RF-QPIQVDQPSVDE 329 (758)
T ss_dssp ------CCCTTS-----------------------SSCEEEEECCTTTTHHHHTTCSHHHH-SE-EEEECCCCCHHH
T ss_pred hHHHHHHHHHhc-----------------------CCEEEEeCCChHHHHHHhhccHHHHh-hC-cEEEeCCCCHHH
Confidence 167777777762 2356777777666 3444444 55 347777776554
No 68
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.17 E-value=1e-10 Score=133.32 Aligned_cols=100 Identities=29% Similarity=0.441 Sum_probs=71.8
Q ss_pred hhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHH
Q 008176 273 KGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 273 ~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~ 352 (575)
..++. |+|+++.++.+...+... .+.++||+||||||||++|+++++
T Consensus 183 ~~~d~-~iGr~~~i~~l~~~l~~~--------------------------------~~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 183 GGIDP-LIGREKELERAIQVLCRR--------------------------------RKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp TCSCC-CCSCHHHHHHHHHHHTSS--------------------------------SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCC-ccCCHHHHHHHHHHHhcc--------------------------------CCCCeEEEcCCCCCHHHHHHHHHH
Confidence 34554 899999999988877410 136899999999999999999998
Q ss_pred Hh----------CCCEEEeccccccc-cccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHh
Q 008176 353 YV----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (575)
Q Consensus 353 ~l----------~~~fv~v~~s~l~~-sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~ 410 (575)
.+ +..++.+++..+.. ..+.|+. +..+...+.... ...++||||||+|.+...
T Consensus 230 ~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~-e~~l~~~~~~~~----~~~~~iL~IDEi~~l~~~ 293 (758)
T 1r6b_X 230 RIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF-EKRFKALLKQLE----QDTNSILFIDEIHTIIGA 293 (758)
T ss_dssp HHHHTCSCGGGTTCEEEECCCC---CCCCCSSCH-HHHHHHHHHHHS----SSSCEEEEETTTTTTTTS
T ss_pred HHHhCCCChhhcCCEEEEEcHHHHhccccccchH-HHHHHHHHHHHH----hcCCeEEEEechHHHhhc
Confidence 76 55677777776542 3466653 566666665443 235789999999999754
No 69
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.17 E-value=3.7e-11 Score=120.69 Aligned_cols=105 Identities=28% Similarity=0.383 Sum_probs=70.6
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
.++|++++++.|...+.. . ...++||+||||||||++|+++++.+
T Consensus 18 ~~~g~~~~~~~l~~~l~~---------~-----------------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~ 65 (319)
T 2chq_A 18 EVVGQDEVIQRLKGYVER---------K-----------------------NIPHLLFSGPPGTGKTATAIALARDLFGE 65 (319)
T ss_dssp GSCSCHHHHHHHHTTTTT---------T-----------------------CCCCEEEESSSSSSHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHhC---------C-----------------------CCCeEEEECcCCcCHHHHHHHHHHHhcCC
Confidence 379999999988876630 0 11469999999999999999999886
Q ss_pred --CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHH
Q 008176 355 --NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (575)
Q Consensus 355 --~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~ 432 (575)
+.+++.+++++..... .....+........ .....+.||+|||+|.+... .+++|++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~vliiDe~~~l~~~--------------~~~~L~~~ 125 (319)
T 2chq_A 66 NWRDNFIEMNASDERGID----VVRHKIKEFARTAP--IGGAPFKIIFLDEADALTAD--------------AQAALRRT 125 (319)
T ss_dssp CHHHHCEEEETTSTTCTT----TSSHHHHHHHHSCC--SSSCCCEEEEEETGGGSCHH--------------HHHTTGGG
T ss_pred cccCCeEEEeCccccChH----HHHHHHHHHHhcCC--CCCCCceEEEEeCCCcCCHH--------------HHHHHHHH
Confidence 2346777776543211 11122222211111 11135789999999999876 78889999
Q ss_pred hh
Q 008176 433 LE 434 (575)
Q Consensus 433 LE 434 (575)
|+
T Consensus 126 le 127 (319)
T 2chq_A 126 ME 127 (319)
T ss_dssp TS
T ss_pred HH
Confidence 88
No 70
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.16 E-value=1.4e-10 Score=119.89 Aligned_cols=62 Identities=21% Similarity=0.234 Sum_probs=49.0
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh--
Q 008176 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (575)
Q Consensus 277 ~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l-- 354 (575)
+.++|+++.++.+...+..... . -.+.+++|+||||||||++|+++++.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~----~------------------------~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK----N------------------------EVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT----T------------------------CCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc----C------------------------CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4589999999999988852111 0 012579999999999999999999887
Q ss_pred ---------CCCEEEeccccc
Q 008176 355 ---------NVPFVIADATTL 366 (575)
Q Consensus 355 ---------~~~fv~v~~s~l 366 (575)
+.+++.++|...
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~~ 92 (384)
T 2qby_B 72 VKKEDEEYKDVKQAYVNCREV 92 (384)
T ss_dssp HHHHSSSSTTCEEEEEEHHHH
T ss_pred HhhhhcCCCCceEEEEECccC
Confidence 888999988654
No 71
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.16 E-value=1.2e-10 Score=119.74 Aligned_cols=63 Identities=25% Similarity=0.257 Sum_probs=48.4
Q ss_pred ccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh--
Q 008176 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (575)
Q Consensus 277 ~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l-- 354 (575)
+.++|+++.++.+...+..... .....+++|+||||||||++|+++++.+
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~----------------------------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR----------------------------GEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS----------------------------SCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc----------------------------CCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3589999999998887731100 0123689999999999999999999887
Q ss_pred -------CCCEEEecccccc
Q 008176 355 -------NVPFVIADATTLT 367 (575)
Q Consensus 355 -------~~~fv~v~~s~l~ 367 (575)
+.+++.++|....
T Consensus 71 ~~~~~~~~~~~~~i~~~~~~ 90 (387)
T 2v1u_A 71 RASSLGVLVKPIYVNARHRE 90 (387)
T ss_dssp HHHHHTCCEEEEEEETTTSC
T ss_pred HHhccCCCeEEEEEECCcCC
Confidence 7788889987643
No 72
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.15 E-value=2.4e-10 Score=117.64 Aligned_cols=105 Identities=30% Similarity=0.345 Sum_probs=67.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
.++|++++++.|..++... + .++.+||+||+|||||++|+++++.++..
T Consensus 17 ~~vg~~~~~~~L~~~l~~~----------~---------------------~~~~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLG----------R---------------------IHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHT----------C---------------------CCSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred hccCcHHHHHHHHHHHHhC----------C---------------------CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3899999999999888410 0 01457899999999999999999887542
Q ss_pred ------------------------EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhh
Q 008176 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (575)
Q Consensus 358 ------------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~ 413 (575)
++.++... ..+. ..++.++...........+.||+|||+|.+...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~--- 134 (373)
T 1jr3_A 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAAS-----RTKV---EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH--- 134 (373)
T ss_dssp TCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC-----SCCS---SCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH---
T ss_pred CCCCCCCCcccHHHHHHhccCCCceEEecccc-----cCCH---HHHHHHHHHHhhccccCCeEEEEEECcchhcHH---
Confidence 12222211 0111 112333322211111234679999999999766
Q ss_pred cccCCCcchHHHHHHHHHHhhC
Q 008176 414 LNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 414 ~~~~~~~~~e~vq~aLL~~LEg 435 (575)
.++.|++.+++
T Consensus 135 -----------~~~~Ll~~le~ 145 (373)
T 1jr3_A 135 -----------SFNALLKTLEE 145 (373)
T ss_dssp -----------HHHHHHHHHHS
T ss_pred -----------HHHHHHHHHhc
Confidence 78999999983
No 73
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.13 E-value=1.1e-10 Score=117.34 Aligned_cols=103 Identities=20% Similarity=0.269 Sum_probs=69.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
.++|++++++.|...+... ...+++|+||+|+|||++|+++++.+
T Consensus 22 ~~~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~ 69 (323)
T 1sxj_B 22 DIVGNKETIDRLQQIAKDG--------------------------------NMPHMIISGMPGIGKTTSVHCLAHELLGR 69 (323)
T ss_dssp GCCSCTHHHHHHHHHHHSC--------------------------------CCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred HHHCCHHHHHHHHHHHHcC--------------------------------CCCeEEEECcCCCCHHHHHHHHHHHhcCC
Confidence 3799999999998887410 01359999999999999999999886
Q ss_pred --CCCEEEeccccccccccccchhhhHHHHHhhhch---hhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHH
Q 008176 355 --NVPFVIADATTLTQAGYVGEDVESILYKLLTVSD---YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (575)
Q Consensus 355 --~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~---~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aL 429 (575)
+.+++.+++++... ...+++.+.... .......+.||+|||+|.+... .+++|
T Consensus 70 ~~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~~L 127 (323)
T 1sxj_B 70 SYADGVLELNASDDRG--------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG--------------AQQAL 127 (323)
T ss_dssp GHHHHEEEECTTSCCS--------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH--------------HHHTT
T ss_pred cccCCEEEecCccccC--------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH--------------HHHHH
Confidence 34567777655321 111222221110 0000134679999999999876 78899
Q ss_pred HHHhh
Q 008176 430 LKMLE 434 (575)
Q Consensus 430 L~~LE 434 (575)
++.++
T Consensus 128 ~~~le 132 (323)
T 1sxj_B 128 RRTME 132 (323)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99998
No 74
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.12 E-value=1.1e-10 Score=120.18 Aligned_cols=136 Identities=18% Similarity=0.210 Sum_probs=85.0
Q ss_pred ChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh------
Q 008176 281 GQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV------ 354 (575)
Q Consensus 281 Gqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l------ 354 (575)
||+++++.|...+... ..+++||+||||+|||++|+++|+.+
T Consensus 1 g~~~~~~~L~~~i~~~--------------------------------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~ 48 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS--------------------------------EGISILINGEDLSYPREVSLELPEYVEKFPPK 48 (305)
T ss_dssp ---CHHHHHHHHHHTC--------------------------------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCC
T ss_pred ChHHHHHHHHHHHHCC--------------------------------CCcEEEEECCCCCCHHHHHHHHHHhCchhhcc
Confidence 7888899888888500 01578899999999999999999864
Q ss_pred CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 355 ~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
..++..++++.. ..+. ..++++.+.+..........|++|||+|.+... .+++||+.||
T Consensus 49 ~~d~~~l~~~~~----~~~i---d~ir~li~~~~~~p~~~~~kvviIdead~lt~~--------------a~naLLk~LE 107 (305)
T 2gno_A 49 ASDVLEIDPEGE----NIGI---DDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ--------------AANAFLKALE 107 (305)
T ss_dssp TTTEEEECCSSS----CBCH---HHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH--------------HHHHTHHHHH
T ss_pred CCCEEEEcCCcC----CCCH---HHHHHHHHHHhhccccCCceEEEeccHHHhCHH--------------HHHHHHHHHh
Confidence 345666665421 1221 223444433322111234679999999999876 8999999999
Q ss_pred CCeecccCCCcccCCCCCcceecCCCEEEEec-CCCcChHHHHHhhhcccCCCCCCchhhh
Q 008176 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICG-GAFVDIEKTISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 435 g~~v~vpe~g~~~~~~~~~ivi~tsnil~I~t-gn~~dL~~~i~~rr~~~~IgF~~p~~e~ 494 (575)
+ ...+++||.+ .+...+.++++.| .+.|..+..++
T Consensus 108 e---------------------p~~~t~fIl~t~~~~kl~~tI~SR----~~~f~~l~~~~ 143 (305)
T 2gno_A 108 E---------------------PPEYAVIVLNTRRWHYLLPTIKSR----VFRVVVNVPKE 143 (305)
T ss_dssp S---------------------CCTTEEEEEEESCGGGSCHHHHTT----SEEEECCCCHH
T ss_pred C---------------------CCCCeEEEEEECChHhChHHHHce----eEeCCCCCHHH
Confidence 4 1223444444 4433466666665 66666665543
No 75
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.11 E-value=8.5e-10 Score=114.13 Aligned_cols=106 Identities=33% Similarity=0.521 Sum_probs=71.6
Q ss_pred hhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHH
Q 008176 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 274 ~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
.+++ ++|++.+++.+...+.....+ .+ ...+++|+||||+||||||+++|+.
T Consensus 23 ~l~~-~~g~~~~~~~l~~~i~~~~~~-------~~--------------------~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 23 SLDE-FIGQENVKKKLSLALEAAKMR-------GE--------------------VLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp SGGG-CCSCHHHHHHHHHHHHHHHHH-------TC--------------------CCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred cHHH-ccCcHHHHHHHHHHHHHHHhc-------CC--------------------CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3444 689999999988777421110 00 1257899999999999999999999
Q ss_pred hCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHh
Q 008176 354 VNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (575)
Q Consensus 354 l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~L 433 (575)
++.++...++..+.. +.+ +...+.. .....|+||||++.+.+. +++.|+..|
T Consensus 75 l~~~~~~~sg~~~~~----~~~----l~~~~~~------~~~~~v~~iDE~~~l~~~--------------~~e~L~~~~ 126 (334)
T 1in4_A 75 LQTNIHVTSGPVLVK----QGD----MAAILTS------LERGDVLFIDEIHRLNKA--------------VEELLYSAI 126 (334)
T ss_dssp HTCCEEEEETTTCCS----HHH----HHHHHHH------CCTTCEEEEETGGGCCHH--------------HHHHHHHHH
T ss_pred hCCCEEEEechHhcC----HHH----HHHHHHH------ccCCCEEEEcchhhcCHH--------------HHHHHHHHH
Confidence 998876665543321 111 2222111 124679999999998764 778888888
Q ss_pred hC
Q 008176 434 EG 435 (575)
Q Consensus 434 Eg 435 (575)
+.
T Consensus 127 ~~ 128 (334)
T 1in4_A 127 ED 128 (334)
T ss_dssp HT
T ss_pred Hh
Confidence 74
No 76
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=3.2e-10 Score=117.00 Aligned_cols=106 Identities=25% Similarity=0.331 Sum_probs=69.5
Q ss_pred hcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 275 Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
+++ ++||+++++.|...+... ...|++|+||||||||++|+++|+.+
T Consensus 24 ~~~-~~g~~~~~~~L~~~i~~g--------------------------------~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 24 LDE-VYGQNEVITTVRKFVDEG--------------------------------KLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp GGG-CCSCHHHHHHHHHHHHTT--------------------------------CCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHH-hcCcHHHHHHHHHHHhcC--------------------------------CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 444 789999999998887510 01358999999999999999999986
Q ss_pred CC-----CEEEeccccccccccccchhhhHHHHHhhhch--hhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHH
Q 008176 355 NV-----PFVIADATTLTQAGYVGEDVESILYKLLTVSD--YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (575)
Q Consensus 355 ~~-----~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~--~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~ 427 (575)
.. .+..+++++.. |. ..+++.+.... .........|++|||+|.+... .++
T Consensus 71 ~~~~~~~~~~~~~~~~~~-----~~---~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~ 128 (340)
T 1sxj_C 71 YGKNYSNMVLELNASDDR-----GI---DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA--------------AQN 128 (340)
T ss_dssp HTTSHHHHEEEECTTSCC-----SH---HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH--------------HHH
T ss_pred cCCCccceEEEEcCcccc-----cH---HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH--------------HHH
Confidence 32 25555554321 11 11222111100 0001123679999999999766 799
Q ss_pred HHHHHhhC
Q 008176 428 ALLKMLEG 435 (575)
Q Consensus 428 aLL~~LEg 435 (575)
+|++.||.
T Consensus 129 ~L~~~le~ 136 (340)
T 1sxj_C 129 ALRRVIER 136 (340)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999993
No 77
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.11 E-value=2.7e-10 Score=116.44 Aligned_cols=85 Identities=16% Similarity=0.292 Sum_probs=57.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l 407 (575)
.+++|+||||||||++|+++++.+ +.+++.+++.++.. .+.+....... ..+.. ....++||||||++.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~-~~~~~-----~~~~~~vL~iDEi~~l 110 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ-AMVEHLKKGTI-NEFRN-----MYKSVDLLLLDDVQFL 110 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH-HHHHHHHHTCH-HHHHH-----HHHTCSEEEEECGGGG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH-HHHHHHHcCcH-HHHHH-----HhcCCCEEEEcCcccc
Confidence 579999999999999999999988 88999998876542 12211100000 11110 1134789999999998
Q ss_pred hHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
..++. .|+.|+..++
T Consensus 111 ~~~~~------------~~~~l~~~l~ 125 (324)
T 1l8q_A 111 SGKER------------TQIEFFHIFN 125 (324)
T ss_dssp TTCHH------------HHHHHHHHHH
T ss_pred cCChH------------HHHHHHHHHH
Confidence 75321 5777777766
No 78
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.10 E-value=3.6e-10 Score=116.62 Aligned_cols=112 Identities=14% Similarity=0.187 Sum_probs=71.9
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCc--cEEEEcCCCCChHHHHHHHHHHh-
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKS--NILLMGPTGSGKTLLAKTLARYV- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~--~VLL~GPpGTGKTtLAraLA~~l- 354 (575)
.++|+++.++.|...+..... .. .+. +++|+||+|||||++++++++.+
T Consensus 18 ~l~gr~~~~~~l~~~l~~~~~----~~------------------------~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLR----NP------------------------GHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHH----ST------------------------TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHHc----CC------------------------CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 589999999999988852211 00 013 78999999999999999999988
Q ss_pred ---CCCEEEecccccccc-cc--------------ccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhccc
Q 008176 355 ---NVPFVIADATTLTQA-GY--------------VGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (575)
Q Consensus 355 ---~~~fv~v~~s~l~~s-g~--------------vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~ 416 (575)
+..++.++|...... .. .+......+..+.... .....+.||+|||++.+...
T Consensus 70 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~vlilDE~~~l~~~------ 140 (389)
T 1fnn_A 70 DKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHL---RERDLYMFLVLDDAFNLAPD------ 140 (389)
T ss_dssp TSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH---HHTTCCEEEEEETGGGSCHH------
T ss_pred hhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHH---hhcCCeEEEEEECccccchH------
Confidence 567888887654310 00 0111011111110000 01134679999999999544
Q ss_pred CCCcchHHHHHHHHHHhh
Q 008176 417 SRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 417 ~~~~~~e~vq~aLL~~LE 434 (575)
++..|+..++
T Consensus 141 --------~~~~L~~~~~ 150 (389)
T 1fnn_A 141 --------ILSTFIRLGQ 150 (389)
T ss_dssp --------HHHHHHHHTT
T ss_pred --------HHHHHHHHHH
Confidence 8899999987
No 79
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.07 E-value=2.3e-10 Score=127.82 Aligned_cols=44 Identities=39% Similarity=0.671 Sum_probs=38.2
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
.++||+.+++.+...+. ...+++|+|||||||||+|+++++.+.
T Consensus 42 ~i~G~~~~l~~l~~~i~----------------------------------~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAAN----------------------------------QKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HCCSCHHHHHHHHHHHH----------------------------------TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred eEECchhhHhhcccccc----------------------------------CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 47999999999888874 125899999999999999999999874
No 80
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.03 E-value=2.1e-09 Score=111.15 Aligned_cols=121 Identities=17% Similarity=0.226 Sum_probs=72.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCC------------------------EEEeccccccccccccchhhhHHHHHhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~------------------------fv~v~~s~l~~sg~vGe~~~~~l~~lf~~ 386 (575)
+.+||+||+|+|||++|+++|+.+... +..++..+- ....+ ...++++.+.
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~--~~~~~---i~~ir~l~~~ 99 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG--KNTLG---VDAVREVTEK 99 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT--CSSBC---HHHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc--CCCCC---HHHHHHHHHH
Confidence 458899999999999999999987532 233332100 00111 1223444433
Q ss_pred chhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEec
Q 008176 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (575)
Q Consensus 387 a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~t 466 (575)
...........|++|||+|.+... .+++|++.||+ ...++++|++
T Consensus 100 ~~~~~~~~~~kvviIdead~l~~~--------------a~naLLk~lEe---------------------p~~~~~~Il~ 144 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLTDA--------------AANALLKTLEE---------------------PPAETWFFLA 144 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBCHH--------------HHHHHHHHHTS---------------------CCTTEEEEEE
T ss_pred HhhccccCCcEEEEECchhhcCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEE
Confidence 321111245679999999999876 79999999994 1223455544
Q ss_pred CCCc-ChHHHHHhhhcccCCCCCCchhh
Q 008176 467 GAFV-DIEKTISERRQDSSIGFGAPVRA 493 (575)
Q Consensus 467 gn~~-dL~~~i~~rr~~~~IgF~~p~~e 493 (575)
++.. .+.+.++.|.. .+.|..++.+
T Consensus 145 t~~~~~l~~ti~SRc~--~~~~~~~~~~ 170 (334)
T 1a5t_A 145 TREPERLLATLRSRCR--LHYLAPPPEQ 170 (334)
T ss_dssp ESCGGGSCHHHHTTSE--EEECCCCCHH
T ss_pred eCChHhCcHHHhhcce--eeeCCCCCHH
Confidence 4433 35666665542 4666655543
No 81
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.03 E-value=1.2e-09 Score=112.14 Aligned_cols=45 Identities=22% Similarity=0.357 Sum_probs=34.9
Q ss_pred cccChHHHHHHHHHHH-HhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 278 FVIGQERAKKVLSVAV-YNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al-~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
.++|++++++.+..++ . . . ...+++|+||+|+||||+++++++.+
T Consensus 15 ~~vg~~~~~~~l~~~~~~---------~-~----------------------~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 15 ALSHNEELTNFLKSLSDQ---------P-R----------------------DLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp GCCSCHHHHHHHHTTTTC---------T-T----------------------CCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred HhcCCHHHHHHHHHHHhh---------C-C----------------------CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999998877655 2 0 0 01358999999999999999999954
No 82
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.01 E-value=3.7e-10 Score=122.74 Aligned_cols=144 Identities=13% Similarity=0.141 Sum_probs=92.5
Q ss_pred hHHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHH
Q 008176 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (575)
Q Consensus 268 ~~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLA 347 (575)
-+.+.+.+.. |+||+.+|+.|..++.....+ .....|+||.|+||| ||++|
T Consensus 205 ~~~l~~sIap-I~G~e~vK~aLll~L~GG~~k---------------------------~rgdihVLL~G~PGt-KS~La 255 (506)
T 3f8t_A 205 LTTFARAIAP-LPGAEEVGKMLALQLFSCVGK---------------------------NSERLHVLLAGYPVV-CSEIL 255 (506)
T ss_dssp HHHHHHHHCC-STTCHHHHHHHHHHHTTCCSS---------------------------GGGCCCEEEESCHHH-HHHHH
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHcCCccc---------------------------cCCceeEEEECCCCh-HHHHH
Confidence 3457778889 999999999988877411000 011248999999999 99999
Q ss_pred HHH-HHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhcccCCCcchHHHH
Q 008176 348 KTL-ARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (575)
Q Consensus 348 raL-A~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq 426 (575)
+++ ++.+....+ ..+..-...++.+. +... .. +......+..++++|+|||||+++.++ +|
T Consensus 256 r~i~~~i~pR~~f-t~g~~ss~~gLt~s-~r~~-tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~--------------~q 317 (506)
T 3f8t_A 256 HHVLDHLAPRGVY-VDLRRTELTDLTAV-LKED-RG-WALRAGAAVLADGGILAVDHLEGAPEP--------------HR 317 (506)
T ss_dssp HHHHHHTCSSEEE-EEGGGCCHHHHSEE-EEES-SS-EEEEECHHHHTTTSEEEEECCTTCCHH--------------HH
T ss_pred HHHHHHhCCCeEE-ecCCCCCccCceEE-EEcC-CC-cccCCCeeEEcCCCeeehHhhhhCCHH--------------HH
Confidence 999 777644322 22111000111111 1100 11 222233455678999999999999888 99
Q ss_pred HHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCc
Q 008176 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (575)
Q Consensus 427 ~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~ 470 (575)
.+|++.||++++++. |. .-..++.+|+|+|..
T Consensus 318 saLlEaMEe~~VtI~--G~----------~lparf~VIAA~NP~ 349 (506)
T 3f8t_A 318 WALMEAMDKGTVTVD--GI----------ALNARCAVLAAINPG 349 (506)
T ss_dssp HHHHHHHHHSEEEET--TE----------EEECCCEEEEEECCC
T ss_pred HHHHHHHhCCcEEEC--CE----------EcCCCeEEEEEeCcc
Confidence 999999998888773 21 223456777887764
No 83
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.00 E-value=1e-09 Score=112.52 Aligned_cols=116 Identities=19% Similarity=0.294 Sum_probs=72.4
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh---
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l--- 354 (575)
.++|+++.++.|...+..... . .....++|+||+|||||++++++++.+
T Consensus 21 ~~~gr~~e~~~l~~~l~~~~~----~------------------------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPLYR----E------------------------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGGGG----T------------------------CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHc----C------------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 589999999998877641100 0 013578999999999999999999888
Q ss_pred ---CCCEEEeccccccccc---------------cccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHhhhhccc
Q 008176 355 ---NVPFVIADATTLTQAG---------------YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (575)
Q Consensus 355 ---~~~fv~v~~s~l~~sg---------------~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~r~~~~~ 416 (575)
+.+++.+++....... ..+......+..++.... ....+.||+|||++.+.....
T Consensus 73 ~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDE~~~l~~~~~---- 145 (386)
T 2qby_A 73 FLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR---DYGSQVVIVLDEIDAFVKKYN---- 145 (386)
T ss_dssp TCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH---TCCSCEEEEEETHHHHHHSSC----
T ss_pred hcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEcChhhhhccCc----
Confidence 7888888876432100 011111111222211110 012377999999999975411
Q ss_pred CCCcchHHHHHHHHHHhh
Q 008176 417 SRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 417 ~~~~~~e~vq~aLL~~LE 434 (575)
. .++..|+..++
T Consensus 146 -~-----~~l~~l~~~~~ 157 (386)
T 2qby_A 146 -D-----DILYKLSRINS 157 (386)
T ss_dssp -S-----THHHHHHHHHH
T ss_pred -C-----HHHHHHhhchh
Confidence 0 16777888876
No 84
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.97 E-value=1.6e-09 Score=103.73 Aligned_cols=76 Identities=21% Similarity=0.273 Sum_probs=54.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l 407 (575)
.+++|+||||||||++|+++++.+ +.+++.+++.++... + .. .+.. ...+.+|+|||++.+
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~-~-----~~----~~~~------~~~~~vliiDe~~~~ 116 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI-S-----TA----LLEG------LEQFDLICIDDVDAV 116 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS-C-----GG----GGTT------GGGSSEEEEETGGGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH-H-----HH----HHHh------ccCCCEEEEeccccc
Confidence 689999999999999999999877 367777887765421 1 11 1111 135789999999998
Q ss_pred hHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
..... .++.|+.+++
T Consensus 117 ~~~~~------------~~~~l~~~l~ 131 (242)
T 3bos_A 117 AGHPL------------WEEAIFDLYN 131 (242)
T ss_dssp TTCHH------------HHHHHHHHHH
T ss_pred cCCHH------------HHHHHHHHHH
Confidence 76411 3677777776
No 85
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.93 E-value=4.1e-09 Score=113.46 Aligned_cols=85 Identities=21% Similarity=0.350 Sum_probs=56.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh-----CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhh-ccCeEeehhH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAA-QQGIVYIDEV 404 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l-----~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~-~~~ILfIDEI 404 (575)
.+++|+||||||||+||+++++.+ +.+++.+++.++.. .++..- .......+.. ... .+.||||||+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~-~~~~~~-~~~~~~~~~~-----~~~~~~~vL~IDEi 203 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN-DLVDSM-KEGKLNEFRE-----KYRKKVDILLIDDV 203 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH-HHHHHH-HTTCHHHHHH-----HHTTTCSEEEEECG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HHHHHH-HcccHHHHHH-----HhcCCCCEEEEeCc
Confidence 579999999999999999999988 77888888776531 111110 0000000100 112 5789999999
Q ss_pred hhhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 405 DKITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 405 D~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
+.+...+ ..|+.|+..++
T Consensus 204 ~~l~~~~------------~~q~~l~~~l~ 221 (440)
T 2z4s_A 204 QFLIGKT------------GVQTELFHTFN 221 (440)
T ss_dssp GGGSSCH------------HHHHHHHHHHH
T ss_pred ccccCCh------------HHHHHHHHHHH
Confidence 9987631 16777877776
No 86
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.71 E-value=2.3e-08 Score=93.38 Aligned_cols=82 Identities=15% Similarity=0.227 Sum_probs=48.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh----CCCEEEeccccccccccccchhhhHHHHHhhhc---hhhHHhhccCeEeehh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTLTQAGYVGEDVESILYKLLTVS---DYNVAAAQQGIVYIDE 403 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l----~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a---~~~l~~~~~~ILfIDE 403 (575)
..++|+||+|||||+|++++++.+ +..++.+++.++.. .+...+... ........+.+|+|||
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~llilDE 108 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF----------RLKHLMDEGKDTKFLKTVLNSPVLVLDD 108 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH----------HHHHHHHHTCCSHHHHHHHTCSEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH----------HHHHHhcCchHHHHHHHhcCCCEEEEeC
Confidence 578899999999999999999876 44555555544321 111111110 0001123678999999
Q ss_pred HhhhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 404 VDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 404 ID~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
++....+ ...++.|.++++
T Consensus 109 ~~~~~~~------------~~~~~~l~~ll~ 127 (180)
T 3ec2_A 109 LGSERLS------------DWQRELISYIIT 127 (180)
T ss_dssp CSSSCCC------------HHHHHHHHHHHH
T ss_pred CCCCcCC------------HHHHHHHHHHHH
Confidence 9853211 114566667766
No 87
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.61 E-value=1.5e-07 Score=97.90 Aligned_cols=62 Identities=23% Similarity=0.221 Sum_probs=43.7
Q ss_pred cccChHHHHHHHHHHH-HhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEE--EcCCCCChHHHHHHHHHHh
Q 008176 278 FVIGQERAKKVLSVAV-YNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILL--MGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al-~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL--~GPpGTGKTtLAraLA~~l 354 (575)
.++|+++.++.|...+ ..... .. ...+..+++ +||+|+|||++++.+++.+
T Consensus 23 ~l~gR~~el~~l~~~l~~~~~~----~~----------------------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 23 ELRVRRGEAEALARIYLNRLLS----GA----------------------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHT----SS----------------------CBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhHHHhc----CC----------------------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 5899999999988877 41110 00 001256788 9999999999999999776
Q ss_pred ---------CCCEEEecccc
Q 008176 355 ---------NVPFVIADATT 365 (575)
Q Consensus 355 ---------~~~fv~v~~s~ 365 (575)
+..++.++|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 77 SEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp HHHHHHTTCCEEEEEEEGGG
T ss_pred HHHHhccCCceeEEEEECCC
Confidence 44567777643
No 88
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.40 E-value=3e-06 Score=85.56 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=41.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
.++|.++..+.|..++.. .+.++++||+|+|||+|++.+++..+
T Consensus 13 ~~~gR~~el~~L~~~l~~----------------------------------~~~v~i~G~~G~GKT~Ll~~~~~~~~-- 56 (350)
T 2qen_A 13 DIFDREEESRKLEESLEN----------------------------------YPLTLLLGIRRVGKSSLLRAFLNERP-- 56 (350)
T ss_dssp GSCSCHHHHHHHHHHHHH----------------------------------CSEEEEECCTTSSHHHHHHHHHHHSS--
T ss_pred hcCChHHHHHHHHHHHhc----------------------------------CCeEEEECCCcCCHHHHHHHHHHHcC--
Confidence 479999999999887740 14688999999999999999998875
Q ss_pred EEEecccc
Q 008176 358 FVIADATT 365 (575)
Q Consensus 358 fv~v~~s~ 365 (575)
.+.+++..
T Consensus 57 ~~~~~~~~ 64 (350)
T 2qen_A 57 GILIDCRE 64 (350)
T ss_dssp EEEEEHHH
T ss_pred cEEEEeec
Confidence 66666543
No 89
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.40 E-value=8.7e-08 Score=90.77 Aligned_cols=36 Identities=33% Similarity=0.448 Sum_probs=30.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l 366 (575)
.+++|+||||||||++|+++++.+ +.+++.+++.++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 579999999999999999999877 567777777654
No 90
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.38 E-value=1.2e-06 Score=107.66 Aligned_cols=161 Identities=16% Similarity=0.152 Sum_probs=87.5
Q ss_pred HHHHhhhcccccChHHHHHHHHHHHHhhhhhHhhhhhc-c-cccCCC-CCCCCCCCCCCccc-----c-cCccEEEEcCC
Q 008176 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQ-K-RSAGES-SSCTTDGVDDDTVE-----L-EKSNILLMGPT 339 (575)
Q Consensus 269 ~el~~~Ld~~VvGqd~ak~~L~~al~~~~~r~~~~~~~-~-~~~~~~-~~~~~~~l~~i~v~-----i-~~~~VLL~GPp 339 (575)
++....+++ |-|.+++|+.+.+++.++....+..... + ...... -..-+..+.+.+.. + ..+.+|++|||
T Consensus 1013 ~~~~~~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~ 1091 (1706)
T 3cmw_A 1013 SASGSSTGS-MSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPE 1091 (1706)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECST
T ss_pred ccCCceeee-cCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCC
Confidence 344455665 7999999999999987655332211000 0 000000 00000001111111 1 12348899999
Q ss_pred CCChHHHHHHHHHHh---CCCEEEeccccccc-----------cccccc----hhhhHHHHHhhhchhhHHhhccCeEee
Q 008176 340 GSGKTLLAKTLARYV---NVPFVIADATTLTQ-----------AGYVGE----DVESILYKLLTVSDYNVAAAQQGIVYI 401 (575)
Q Consensus 340 GTGKTtLAraLA~~l---~~~fv~v~~s~l~~-----------sg~vGe----~~~~~l~~lf~~a~~~l~~~~~~ILfI 401 (575)
|||||++|++++... +.+-+.++..+..+ ..|+++ + ++.++.++..++ ...+++||+
T Consensus 1092 g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~-e~~l~~~~~~ar----~~~~~~i~~ 1166 (1706)
T 3cmw_A 1092 SSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG-EQALEICDALAR----SGAVDVIVV 1166 (1706)
T ss_dssp TSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSH-HHHHHHHHHHHH----HTCCSEEEE
T ss_pred CCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccch-HHHHHHHHHHHH----hcCCeEEEe
Confidence 999999999998655 55656666655221 345666 4 567777766554 357899999
Q ss_pred hhHhhhhHhhhhcccCCC---cchHHHHHHHHHHhhC
Q 008176 402 DEVDKITKKAESLNISRD---VSGEGVQQALLKMLEG 435 (575)
Q Consensus 402 DEID~l~~~r~~~~~~~~---~~~e~vq~aLL~~LEg 435 (575)
||++++.+.+...+..++ .-.+++.+++|..|++
T Consensus 1167 d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~ 1203 (1706)
T 3cmw_A 1167 DSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1203 (1706)
T ss_dssp SCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred CchHhcCcccccccccccccccHHHHHHHHHHHHHHh
Confidence 999999998663322222 2234567788888775
No 91
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.37 E-value=4.7e-07 Score=115.37 Aligned_cols=142 Identities=17% Similarity=0.174 Sum_probs=81.8
Q ss_pred CccEEEEcCCCCChHHHH-HHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhch---hhH----HhhccCeEee
Q 008176 330 KSNILLMGPTGSGKTLLA-KTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSD---YNV----AAAQQGIVYI 401 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLA-raLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~---~~l----~~~~~~ILfI 401 (575)
..++||+||||||||++| +++++..+..++.++++..+.+. ...+.+...+.... ..+ ....++||||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~----~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFi 1342 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTE----HILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFC 1342 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHH----HHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHH----HHHHHHHHHhhhccccCCccccCCCCCceEEEEe
Confidence 368999999999999999 55555556778888887765321 11222222221110 000 0234579999
Q ss_pred hhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCc------ChHHH
Q 008176 402 DEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV------DIEKT 475 (575)
Q Consensus 402 DEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~------dL~~~ 475 (575)
||++....++- +...+...|.++||.+.+.. ... ...+...++.+|+++|.+ +++..
T Consensus 1343 DEinmp~~d~y--------g~q~~lelLRq~le~gg~yd--------~~~-~~~~~~~~i~lIaA~Npp~~gGR~~l~~r 1405 (2695)
T 4akg_A 1343 DEINLPKLDKY--------GSQNVVLFLRQLMEKQGFWK--------TPE-NKWVTIERIHIVGACNPPTDPGRIPMSER 1405 (2695)
T ss_dssp ETTTCSCCCSS--------SCCHHHHHHHHHHHTSSEEC--------TTT-CCEEEEESEEEEEEECCTTSTTCCCCCHH
T ss_pred ccccccccccc--------CchhHHHHHHHHHhcCCEEE--------cCC-CcEEEecCEEEEEecCCCccCCCccCChh
Confidence 99997443311 11126788888888322211 111 112233678999999876 25555
Q ss_pred HHhhhcccCCCCCCchhhh
Q 008176 476 ISERRQDSSIGFGAPVRAN 494 (575)
Q Consensus 476 i~~rr~~~~IgF~~p~~e~ 494 (575)
+.+ +| ..+.++.|+.+.
T Consensus 1406 llR-rf-~vi~i~~P~~~~ 1422 (2695)
T 4akg_A 1406 FTR-HA-AILYLGYPSGKS 1422 (2695)
T ss_dssp HHT-TE-EEEECCCCTTTH
T ss_pred hhh-ee-eEEEeCCCCHHH
Confidence 543 44 557777776655
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.30 E-value=1.1e-06 Score=80.81 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=44.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l 407 (575)
..++|+||+|+|||+|++++++.+ +...+.+++.++... .+ ...+.+|+|||++.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------------~~--------~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------------DA--------AFEAEYLAVDQVEKL 95 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------------GG--------GGGCSEEEEESTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------------HH--------HhCCCEEEEeCcccc
Confidence 567799999999999999999887 666777777665421 00 135679999999887
Q ss_pred hHh
Q 008176 408 TKK 410 (575)
Q Consensus 408 ~~~ 410 (575)
...
T Consensus 96 ~~~ 98 (149)
T 2kjq_A 96 GNE 98 (149)
T ss_dssp CSH
T ss_pred ChH
Confidence 654
No 93
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.26 E-value=7.8e-06 Score=82.59 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=42.3
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
.++|.++..+.|.. +. . +.++++||+|+|||+|++.+++..+..
T Consensus 14 ~~~gR~~el~~L~~-l~----------------------------------~-~~v~i~G~~G~GKT~L~~~~~~~~~~~ 57 (357)
T 2fna_A 14 DFFDREKEIEKLKG-LR----------------------------------A-PITLVLGLRRTGKSSIIKIGINELNLP 57 (357)
T ss_dssp GSCCCHHHHHHHHH-TC----------------------------------S-SEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred HhcChHHHHHHHHH-hc----------------------------------C-CcEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 47999998888877 62 0 368899999999999999999988777
Q ss_pred EEEecccc
Q 008176 358 FVIADATT 365 (575)
Q Consensus 358 fv~v~~s~ 365 (575)
.+.+++..
T Consensus 58 ~~~~~~~~ 65 (357)
T 2fna_A 58 YIYLDLRK 65 (357)
T ss_dssp EEEEEGGG
T ss_pred EEEEEchh
Confidence 77777654
No 94
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.10 E-value=6.8e-07 Score=91.78 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=29.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh----CCCEEEeccccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTL 366 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l----~~~fv~v~~s~l 366 (575)
.+++|+||||||||+||+++|+.+ +.+++.+.+.++
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 689999999999999999999765 367776776654
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.08 E-value=1.5e-05 Score=101.94 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=52.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~ 410 (575)
.++++.||+|||||++++++|+.+|.+++.++|++-... ..+...|..+ ...++++++||++++..+
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~--------~~lg~~~~g~-----~~~Gaw~~~DE~nr~~~e 712 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY--------QVLSRLLVGI-----TQIGAWGCFDEFNRLDEK 712 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH--------HHHHHHHHHH-----HHHTCEEEEETTTSSCHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh--------hHhhHHHHHH-----HhcCCEeeehhhhhcChH
Confidence 467899999999999999999999999999999975431 1222233222 235789999999999876
No 96
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.94 E-value=1.3e-05 Score=78.64 Aligned_cols=77 Identities=12% Similarity=0.313 Sum_probs=49.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~ 410 (575)
.++||+||||||||++|.++|+.+...++....+. +.+ .+.. .....|++|||+|...-.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~---s~f-----------~l~~------l~~~kIiiLDEad~~~~~ 118 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST---SHF-----------WLEP------LTDTKVAMLDDATTTCWT 118 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS---SCG-----------GGGG------GTTCSSEEEEEECHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc---chh-----------hhcc------cCCCCEEEEECCCchhHH
Confidence 46899999999999999999999865432111100 000 0000 123459999999854321
Q ss_pred hhhcccCCCcchHHHHHHHHHHhhCCeecc
Q 008176 411 AESLNISRDVSGEGVQQALLKMLEGTVVNV 440 (575)
Q Consensus 411 r~~~~~~~~~~~e~vq~aLL~~LEg~~v~v 440 (575)
.+...+..+|||..+.+
T Consensus 119 -------------~~d~~lrn~ldG~~~~i 135 (212)
T 1tue_A 119 -------------YFDTYMRNALDGNPISI 135 (212)
T ss_dssp -------------HHHHHCHHHHHTCCEEE
T ss_pred -------------HHHHHHHHHhCCCcccH
Confidence 25677888999876554
No 97
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.89 E-value=7.1e-06 Score=85.44 Aligned_cols=73 Identities=18% Similarity=0.302 Sum_probs=41.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCC--EEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVP--FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~--fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~ 408 (575)
..++|+||||||||+||..+|...+.+ |+.....+... .+. .+.+..+..+.+.. . ..+ +|+|||++.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~-~~~-~~le~~l~~i~~~l----~-~~~-LLVIDsI~aL~ 195 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS-GYN-TDFNVFVDDIARAM----L-QHR-VIVIDSLKNVI 195 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSST-TCB-CCHHHHHHHHHHHH----H-HCS-EEEEECCTTTC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhh-hhh-cCHHHHHHHHHHHH----h-hCC-EEEEecccccc
Confidence 456799999999999999998765444 55442222211 111 12233333332221 1 223 99999999986
Q ss_pred Hhh
Q 008176 409 KKA 411 (575)
Q Consensus 409 ~~r 411 (575)
..+
T Consensus 196 ~~~ 198 (331)
T 2vhj_A 196 GAA 198 (331)
T ss_dssp ---
T ss_pred ccc
Confidence 653
No 98
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.88 E-value=3.7e-05 Score=77.94 Aligned_cols=26 Identities=38% Similarity=0.620 Sum_probs=23.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCC
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~ 356 (575)
.+++|+||||||||++|++||+.+..
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 57999999999999999999997643
No 99
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.84 E-value=0.00012 Score=69.11 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.2
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCE
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPF 358 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~f 358 (575)
.+.|+||+|+|||||++.+++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 467999999999999999999886443
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.63 E-value=4.4e-05 Score=98.52 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=67.7
Q ss_pred ccEEEEcCCCCChHHHHHH-HHHHhCCCEEEeccccccccccccchhhhHHHHHhhhch----hhH-H---hhccCeEee
Q 008176 331 SNILLMGPTGSGKTLLAKT-LARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSD----YNV-A---AAQQGIVYI 401 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAra-LA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~----~~l-~---~~~~~ILfI 401 (575)
.++||+||||||||.+++. +++..+.+++.++++.-+.+. .....+....+... ..+ . ..+..|+||
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~----~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFi 1380 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPE----LLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFC 1380 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHH----HHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHH----HHHHHHhhcceEEeccCCCcccCCCcCCceEEEEe
Confidence 5899999999999977654 454446677888888755321 11111111111110 111 1 133469999
Q ss_pred hhHhhhhHhhhhcccCCCcchHHHHHHHHHHhhCCeecccCCCcccCCCCCcceecCCCEEEEecCCCc
Q 008176 402 DEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (575)
Q Consensus 402 DEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LEg~~v~vpe~g~~~~~~~~~ivi~tsnil~I~tgn~~ 470 (575)
||++....+. .+...+...|.++||.+....+++ .-.+...++.+|+|.|.+
T Consensus 1381 DDiNmp~~D~--------yGtQ~~ielLrqlld~~g~yd~~~---------~~~~~i~d~~~vaamnPp 1432 (3245)
T 3vkg_A 1381 DEINLPSTDK--------YGTQRVITFIRQMVEKGGFWRTSD---------HTWIKLDKIQFVGACNPP 1432 (3245)
T ss_dssp TTTTCCCCCT--------TSCCHHHHHHHHHHHHSEEEETTT---------TEEEEESSEEEEEEECCT
T ss_pred cccCCCCccc--------cccccHHHHHHHHHHcCCeEECCC---------CeEEEecCeEEEEEcCCC
Confidence 9999754321 111127888899999433332211 112344788899987754
No 101
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.60 E-value=3.6e-05 Score=73.01 Aligned_cols=44 Identities=36% Similarity=0.521 Sum_probs=27.9
Q ss_pred CCCCCCCcccccCc-cEEEEcCCCCChHHHHHHHHHHhCCCEEEe
Q 008176 318 TDGVDDDTVELEKS-NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (575)
Q Consensus 318 ~~~l~~i~v~i~~~-~VLL~GPpGTGKTtLAraLA~~l~~~fv~v 361 (575)
...++++++.+.++ .++|+|++||||||++++||+.++.+++..
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 34678889988776 566999999999999999999999888643
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.50 E-value=0.00011 Score=71.09 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=43.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH--------hC-CCEEEeccccccccccc-------------cchh-hhHHHHHhhhc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY--------VN-VPFVIADATTLTQAGYV-------------GEDV-ESILYKLLTVS 387 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~--------l~-~~fv~v~~s~l~~sg~v-------------Ge~~-~~~l~~lf~~a 387 (575)
.-.|++|+||+|||++|..+... .| .+++..++.++.. +.. .+.. ...+.+.+.
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~-~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-- 82 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKI-PHTYIETDAKKLPKSTDEQLSAHDMYEWIK-- 82 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCS-CCEEEECCTTTCSSCCSSCEEGGGHHHHTT--
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccc-cccccchhhhhccccCcccccHHHHHHHhh--
Confidence 45789999999999999886433 23 5665566655442 121 0000 011121111
Q ss_pred hhhHHhhccCeEeehhHhhhhHh
Q 008176 388 DYNVAAAQQGIVYIDEVDKITKK 410 (575)
Q Consensus 388 ~~~l~~~~~~ILfIDEID~l~~~ 410 (575)
.....++||+|||++.+.+.
T Consensus 83 ---~~~~~~~vliIDEAq~l~~~ 102 (199)
T 2r2a_A 83 ---KPENIGSIVIVDEAQDVWPA 102 (199)
T ss_dssp ---SGGGTTCEEEETTGGGTSBC
T ss_pred ---ccccCceEEEEEChhhhccC
Confidence 12245889999999998654
No 103
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.34 E-value=0.00024 Score=86.13 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=39.6
Q ss_pred CCCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhCCC--EEEecccc
Q 008176 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATT 365 (575)
Q Consensus 317 ~~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~~--fv~v~~s~ 365 (575)
+..+|+++++.++++..+ ++||+|+||||++++|.+.+... -+.+++.+
T Consensus 430 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~ 481 (1321)
T 4f4c_A 430 DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVD 481 (1321)
T ss_dssp TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCcc
Confidence 346899999999999877 99999999999999999887543 24455543
No 104
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.30 E-value=0.00039 Score=86.76 Aligned_cols=78 Identities=23% Similarity=0.229 Sum_probs=48.7
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccc---cccccc-----------hhhhHHHHHhhhchhhHH
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYVGE-----------DVESILYKLLTVSDYNVA 392 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~---sg~vGe-----------~~~~~l~~lf~~a~~~l~ 392 (575)
...++|+||||||||+||.+++... |.....++..+... ....|. ..+..++.+.. .+.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~----lvr 1502 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA----LAR 1502 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHH----HHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHH----HHh
Confidence 4578899999999999999997654 55666677664321 111120 00122222221 223
Q ss_pred hhccCeEeehhHhhhhHhh
Q 008176 393 AAQQGIVYIDEVDKITKKA 411 (575)
Q Consensus 393 ~~~~~ILfIDEID~l~~~r 411 (575)
...+.+|+|||++.+.+.+
T Consensus 1503 ~~~~~lVVIDsi~al~p~~ 1521 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKA 1521 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHH
T ss_pred cCCCCEEEEcChhHhcccc
Confidence 3578999999999888754
No 105
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.26 E-value=0.00012 Score=75.51 Aligned_cols=38 Identities=26% Similarity=0.577 Sum_probs=34.1
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
..+|+++++.++++.++ |+||+|+|||||+++|++.+.
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 45799999999999877 999999999999999998764
No 106
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.22 E-value=0.002 Score=83.48 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=50.1
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhHhhhhHh
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEID~l~~~ 410 (575)
+..+.||+|||||.+++.+|+.+|.+++.++|++-... ..+.+.|... +..++..++||++++..+
T Consensus 606 gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~--------~~~g~i~~G~-----~~~GaW~cfDEfNrl~~~ 671 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL--------QAMSRIFVGL-----CQCGAWGCFDEFNRLEER 671 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH--------HHHHHHHHHH-----HHHTCEEEEETTTSSCHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH--------HHHHHHHhhH-----hhcCcEEEehhhhcCCHH
Confidence 45799999999999999999999999999999874421 1122222221 245788999999999876
No 107
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.17 E-value=0.00024 Score=65.81 Aligned_cols=31 Identities=32% Similarity=0.467 Sum_probs=27.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEe
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v 361 (575)
..++|+|++||||||+|+.||+.++.+++..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 5788999999999999999999999988644
No 108
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.16 E-value=0.0019 Score=69.42 Aligned_cols=89 Identities=21% Similarity=0.347 Sum_probs=50.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CC-CEEEecccccccc---ccccchhhhHHHHHhhhch------------hhH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NV-PFVIADATTLTQA---GYVGEDVESILYKLLTVSD------------YNV 391 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~-~fv~v~~s~l~~s---g~vGe~~~~~l~~lf~~a~------------~~l 391 (575)
+++++.|+||||||+++.+++..+ +. .++.+..+..... ...+.. ...+...+.... ...
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~-~~T~h~~~~~~~~~~~~~~~~~~~~~~ 124 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKE-ASTIHSILKINPVTYEENVLFEQKEVP 124 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSC-EEEHHHHHTEEEEECSSCEEEEECSCC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccc-hhhHHHHhccCcccccccchhcccccc
Confidence 478899999999999999998776 33 4444433321100 000110 111122222100 000
Q ss_pred HhhccCeEeehhHhhhhHhhhhcccCCCcchHHHHHHHHHHhh
Q 008176 392 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (575)
Q Consensus 392 ~~~~~~ILfIDEID~l~~~r~~~~~~~~~~~e~vq~aLL~~LE 434 (575)
......+|++||+..+... .+..|+..+.
T Consensus 125 ~~~~~~~iiiDE~~~~~~~--------------~~~~l~~~~~ 153 (459)
T 3upu_A 125 DLAKCRVLICDEVSMYDRK--------------LFKILLSTIP 153 (459)
T ss_dssp CCSSCSEEEESCGGGCCHH--------------HHHHHHHHSC
T ss_pred cccCCCEEEEECchhCCHH--------------HHHHHHHhcc
Confidence 0124579999999988765 7888888886
No 109
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.15 E-value=0.00034 Score=64.21 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=29.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s 364 (575)
..++|+|+||+||||+|++|++.++.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 4578999999999999999999998888765543
No 110
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.13 E-value=0.00028 Score=85.64 Aligned_cols=49 Identities=22% Similarity=0.459 Sum_probs=39.9
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhCCC--EEEecccccc
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATTLT 367 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~~--fv~v~~s~l~ 367 (575)
.+|+++++.++++..+ ++|++|+|||||+++|.+.+... -+.+|+.++.
T Consensus 1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~ 1144 (1321)
T 4f4c_A 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIK 1144 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETT
T ss_pred ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhh
Confidence 5899999999999877 99999999999999999887432 3556665543
No 111
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.12 E-value=0.00068 Score=75.57 Aligned_cols=39 Identities=36% Similarity=0.587 Sum_probs=34.7
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhCC
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV 356 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~ 356 (575)
..+++++++.++++.++ ++||+|+||||+++++++....
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 407 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV 407 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC
Confidence 45899999999999887 9999999999999999987743
No 112
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.03 E-value=0.00044 Score=62.65 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=27.0
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEec
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~ 362 (575)
.++|.|++|+||||+++.|++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4779999999999999999999998876443
No 113
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.01 E-value=0.0023 Score=61.49 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=20.7
Q ss_pred cccCccEE-EEcCCCCChHHHHHHHH
Q 008176 327 ELEKSNIL-LMGPTGSGKTLLAKTLA 351 (575)
Q Consensus 327 ~i~~~~VL-L~GPpGTGKTtLAraLA 351 (575)
.++++.++ |.||+|+|||||+++++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 34555555 99999999999999998
No 114
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.91 E-value=0.00076 Score=74.82 Aligned_cols=38 Identities=24% Similarity=0.494 Sum_probs=34.2
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
..++++++++++++.++ ++||+|+||||+++++++...
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 35899999999999887 999999999999999998774
No 115
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.91 E-value=0.00056 Score=62.53 Aligned_cols=31 Identities=29% Similarity=0.465 Sum_probs=27.8
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEe
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v 361 (575)
.+++|+|++||||||+++.||+.++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4788999999999999999999999988643
No 116
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.91 E-value=0.00048 Score=64.42 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=25.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH-hCCCEEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY-VNVPFVI 360 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~-l~~~fv~ 360 (575)
..++|+|++||||||+++.|++. ++.+++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 46779999999999999999998 6766653
No 117
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.90 E-value=0.0005 Score=67.40 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=25.7
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhCCC
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~~ 357 (575)
..+++++++++.++.++ |.||+|+||||+++.|+..+|..
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 45789999999988766 99999999999999999987643
No 118
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.89 E-value=0.00052 Score=63.27 Aligned_cols=28 Identities=43% Similarity=0.761 Sum_probs=25.8
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEE
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv 359 (575)
.++|.|+||+||||+|+.||+.++.+++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~ 33 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFL 33 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 5889999999999999999999988775
No 119
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.89 E-value=0.00063 Score=63.00 Aligned_cols=31 Identities=29% Similarity=0.520 Sum_probs=27.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEe
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v 361 (575)
..++|+|+||+||||+|+.|++.++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 3588999999999999999999999887643
No 120
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.88 E-value=0.00044 Score=66.95 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=23.0
Q ss_pred CCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 320 ~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.|+++++.+.++.++ |+||+|+|||||+++|++..
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 578899999888766 99999999999999999977
No 121
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.88 E-value=0.00053 Score=76.34 Aligned_cols=48 Identities=21% Similarity=0.357 Sum_probs=38.4
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhCCC--EEEecccc
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATT 365 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~~--fv~v~~s~ 365 (575)
..++++++++++++.++ ++||+|+||||+++++++.+... -+.+++.+
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~ 406 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELD 406 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSB
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEE
Confidence 45899999999999888 99999999999999999877432 24444443
No 122
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.85 E-value=0.00056 Score=63.51 Aligned_cols=35 Identities=40% Similarity=0.528 Sum_probs=28.7
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccc
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l 366 (575)
.++|+||+|+||||++++|++..+...+.++..++
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 45699999999999999999987767677766543
No 123
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.85 E-value=0.00064 Score=62.08 Aligned_cols=29 Identities=41% Similarity=0.819 Sum_probs=25.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv 359 (575)
..+.|+||+|+||||+++.||+.++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 46789999999999999999999987654
No 124
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.84 E-value=0.00067 Score=62.69 Aligned_cols=30 Identities=43% Similarity=0.630 Sum_probs=26.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
..++|+|+||+||||+++.+++.++.+++.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 568899999999999999999999877753
No 125
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.81 E-value=0.0019 Score=61.00 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=25.8
Q ss_pred ccCcc-EEEEcCCCCChHHHHHHHHHHh---CCCEEEecc
Q 008176 328 LEKSN-ILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (575)
Q Consensus 328 i~~~~-VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~ 363 (575)
++++. ++|+||+|+||||+++.++..+ +..++.++.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 33444 5599999999999999998554 455554443
No 126
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.78 E-value=0.00076 Score=62.45 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=27.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEe
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v 361 (575)
..++|.|+||+||||+++.|++.++.+++..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 4577999999999999999999998877653
No 127
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.78 E-value=0.00035 Score=73.99 Aligned_cols=36 Identities=31% Similarity=0.341 Sum_probs=27.6
Q ss_pred cccccCc-cEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 325 TVELEKS-NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 325 ~v~i~~~-~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
++.++++ .++|+||+|+||||+++++++..+..++.
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 3334444 55699999999999999999988766543
No 128
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.71 E-value=0.0011 Score=62.47 Aligned_cols=31 Identities=35% Similarity=0.627 Sum_probs=27.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEe
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v 361 (575)
..++|+|+||+||||+|+.|++.++.+++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 4678999999999999999999999887644
No 129
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.71 E-value=0.001 Score=65.92 Aligned_cols=32 Identities=41% Similarity=0.467 Sum_probs=28.0
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEecc
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~ 363 (575)
.+++.||||+||||+|+.||+.++.+++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 46799999999999999999999988876554
No 130
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.70 E-value=0.0022 Score=60.74 Aligned_cols=22 Identities=27% Similarity=0.310 Sum_probs=17.8
Q ss_pred cEEEEcCCCCChHHHHHHHHHH
Q 008176 332 NILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-++++||+|+||||++..++..
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999666543
No 131
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.68 E-value=0.00093 Score=61.64 Aligned_cols=30 Identities=13% Similarity=0.260 Sum_probs=26.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
..++|.|+||+||||+|+.|++.++.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 457899999999999999999999877653
No 132
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.67 E-value=0.00096 Score=59.95 Aligned_cols=29 Identities=34% Similarity=0.500 Sum_probs=25.0
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEe
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v 361 (575)
.++|.|+||+||||+|+.| +.++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4779999999999999999 8888877643
No 133
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.66 E-value=0.00098 Score=60.71 Aligned_cols=29 Identities=34% Similarity=0.579 Sum_probs=26.1
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
.++|+|++|+||||+|+.|++.++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 57899999999999999999999887754
No 134
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.66 E-value=0.0012 Score=62.14 Aligned_cols=30 Identities=33% Similarity=0.659 Sum_probs=26.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
..++|.|++|+||||+|+.|++.++..++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 468899999999999999999999877654
No 135
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.62 E-value=0.00043 Score=68.19 Aligned_cols=37 Identities=19% Similarity=0.489 Sum_probs=33.6
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++.+.++.++ |+||+|+|||||+++|+....
T Consensus 19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4789999999999888 999999999999999998764
No 136
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.61 E-value=0.0011 Score=61.45 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=26.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEe
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v 361 (575)
..++|.|+||+||||+|+.|++.++.+++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4577999999999999999999998876543
No 137
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.60 E-value=0.00039 Score=69.49 Aligned_cols=30 Identities=37% Similarity=0.552 Sum_probs=26.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
..+.|+|++|+||||+++.||+.++.+++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 467799999999999999999999987764
No 138
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.58 E-value=0.0014 Score=59.50 Aligned_cols=29 Identities=38% Similarity=0.582 Sum_probs=26.2
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
.++|+|++|+||||+|+.|++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 47899999999999999999999988764
No 139
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.57 E-value=0.0064 Score=67.57 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=25.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEec
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~ 362 (575)
+.+++.|+||||||+++++++..+ +.+++.+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 577899999999999999998765 55555443
No 140
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.57 E-value=0.0026 Score=60.92 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=25.9
Q ss_pred cEEEEcCCCCChHHHHHHHHHH--h-------CCCEEEecccc
Q 008176 332 NILLMGPTGSGKTLLAKTLARY--V-------NVPFVIADATT 365 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~--l-------~~~fv~v~~s~ 365 (575)
-++|+||||+|||++++.++.. . +...+.++..+
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4559999999999999999984 3 34466666554
No 141
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.55 E-value=0.00062 Score=63.24 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=26.9
Q ss_pred CCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 322 DDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 322 ~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
+++++.+.++.++ |.||.|+|||||++++++.+
T Consensus 24 ~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 24 ILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred hccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3445566667665 99999999999999999987
No 142
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.55 E-value=0.0014 Score=62.39 Aligned_cols=30 Identities=27% Similarity=0.546 Sum_probs=26.3
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEe
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v 361 (575)
.++|+|+||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999998877644
No 143
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.53 E-value=0.00047 Score=67.35 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=33.4
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++++.++.++ |+||+|+|||||.++++....
T Consensus 18 ~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999999999887 999999999999999998764
No 144
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.53 E-value=0.0014 Score=62.70 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=26.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEe
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v 361 (575)
..++|+|+||+||||+|+.||+.++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4678999999999999999999998776543
No 145
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.52 E-value=0.00069 Score=66.82 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=33.6
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..+++++++.+.++.++ |+||+|+|||||+++|+..+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35799999999999887 99999999999999999876
No 146
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.52 E-value=0.0015 Score=61.99 Aligned_cols=30 Identities=33% Similarity=0.578 Sum_probs=26.3
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEe
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v 361 (575)
.++|+|+||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999998877644
No 147
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.52 E-value=0.0015 Score=60.27 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=25.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv 359 (575)
..++|+|+||+||||+++.|++.++.+++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 35779999999999999999999887664
No 148
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.51 E-value=0.0012 Score=60.85 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=22.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
..++|.|+||+||||+++.|++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999886
No 149
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.51 E-value=0.0045 Score=74.90 Aligned_cols=37 Identities=27% Similarity=0.543 Sum_probs=34.2
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++.++++.++ |+||+|+|||||+++|++...
T Consensus 1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 5899999999999888 999999999999999998763
No 150
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.51 E-value=0.0014 Score=60.31 Aligned_cols=29 Identities=41% Similarity=0.505 Sum_probs=22.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv 359 (575)
..++|+|+||+||||+|+.|++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45779999999999999999999998876
No 151
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.50 E-value=0.0055 Score=64.33 Aligned_cols=78 Identities=21% Similarity=0.185 Sum_probs=44.3
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccc---cccchh-------hhHHHHHhhhchhhHHhhccCe
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAG---YVGEDV-------ESILYKLLTVSDYNVAAAQQGI 398 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg---~vGe~~-------~~~l~~lf~~a~~~l~~~~~~I 398 (575)
-++|+||||+||||||..++..+ +..++.++........ -+|... ...+.+.+......+......+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dl 142 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDL 142 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCe
Confidence 44599999999999999998764 5667677765422100 001000 0011111111111122245779
Q ss_pred EeehhHhhhhH
Q 008176 399 VYIDEVDKITK 409 (575)
Q Consensus 399 LfIDEID~l~~ 409 (575)
++||.+..+.+
T Consensus 143 vVIDSi~~l~~ 153 (356)
T 3hr8_A 143 IVVDSVAALVP 153 (356)
T ss_dssp EEEECTTTCCC
T ss_pred EEehHhhhhcC
Confidence 99999998875
No 152
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.49 E-value=0.0014 Score=60.89 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=26.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
..++|.|+||+||||+|+.|++.++.+++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 457799999999999999999999876653
No 153
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.49 E-value=0.0018 Score=59.41 Aligned_cols=29 Identities=34% Similarity=0.588 Sum_probs=24.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv 359 (575)
..++|+|++|+||||+++.+++.++..++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 35669999999999999999998876554
No 154
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.48 E-value=0.00062 Score=67.87 Aligned_cols=37 Identities=24% Similarity=0.655 Sum_probs=33.5
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++++.++.++ |+||+|+|||||.++++..+.
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4789999999999877 999999999999999998763
No 155
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.48 E-value=0.0006 Score=68.30 Aligned_cols=37 Identities=14% Similarity=0.407 Sum_probs=33.6
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++++.++.++ |+||+|+|||||.++|+..+.
T Consensus 20 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999999999887 999999999999999998764
No 156
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.47 E-value=0.00058 Score=69.15 Aligned_cols=37 Identities=14% Similarity=0.409 Sum_probs=33.6
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++++.++.++ |+||+|+|||||+++|+..+.
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3799999999999887 999999999999999998763
No 157
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.46 E-value=0.0036 Score=64.01 Aligned_cols=78 Identities=10% Similarity=0.079 Sum_probs=49.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CC-CE--EEeccccccccccccchhhhHHHHHhhhchhhHHhhccCeEeehhH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NV-PF--VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~-~f--v~v~~s~l~~sg~vGe~~~~~l~~lf~~a~~~l~~~~~~ILfIDEI 404 (575)
+.+||+||+|.||++.++.+++.+ +. ++ +.++. ..+ ++++.+.+.....-...-|++|||+
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------~~~----~~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---------NTD----WNAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---------TCC----HHHHHHHHHHHHHCCSCEEEEEECC
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---------CCC----HHHHHHHhcCcCCccCCeEEEEECC
Confidence 577899999999999999998765 22 21 21221 011 2222222221111134669999999
Q ss_pred hh-hhHhhhhcccCCCcchHHHHHHHHHHhhC
Q 008176 405 DK-ITKKAESLNISRDVSGEGVQQALLKMLEG 435 (575)
Q Consensus 405 D~-l~~~r~~~~~~~~~~~e~vq~aLL~~LEg 435 (575)
+. +..+ .+++|++.+|+
T Consensus 86 ~~kl~~~--------------~~~aLl~~le~ 103 (343)
T 1jr3_D 86 ENGPNAA--------------INEQLLTLTGL 103 (343)
T ss_dssp SSCCCTT--------------HHHHHHHHHTT
T ss_pred CCCCChH--------------HHHHHHHHHhc
Confidence 98 7655 79999999983
No 158
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.46 E-value=0.0017 Score=63.04 Aligned_cols=31 Identities=32% Similarity=0.480 Sum_probs=27.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEe
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v 361 (575)
..++|+|+||+||||+|+.||+.++.+++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4688999999999999999999998776543
No 159
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.45 E-value=0.0017 Score=78.70 Aligned_cols=47 Identities=17% Similarity=0.314 Sum_probs=38.3
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhCCC--EEEecccc
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATT 365 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~~--fv~v~~s~ 365 (575)
.+|+++++.++++.++ |+||+|+|||||+++|++.+... -+.+++.+
T Consensus 404 ~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~ 453 (1284)
T 3g5u_A 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQD 453 (1284)
T ss_dssp CSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEE
T ss_pred cceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 5899999999999888 99999999999999999877432 24455443
No 160
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.44 E-value=0.00059 Score=68.61 Aligned_cols=37 Identities=24% Similarity=0.628 Sum_probs=33.6
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..+++++++++.++.++ |+||+|+|||||+++|+..+
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 35789999999999888 99999999999999999876
No 161
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.44 E-value=0.0015 Score=60.06 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=26.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEe
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v 361 (575)
..++|+|+||+||||+|+.|++.++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 3577999999999999999999998766543
No 162
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.43 E-value=0.0018 Score=63.80 Aligned_cols=37 Identities=30% Similarity=0.429 Sum_probs=30.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEecccccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l~ 367 (575)
..++|.|+||+||||+|+.|++.++..++.++...+.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r 69 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFR 69 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHH
Confidence 4677999999999999999999987666667776653
No 163
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.43 E-value=0.0014 Score=67.76 Aligned_cols=34 Identities=29% Similarity=0.545 Sum_probs=26.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCC--CEEEeccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADAT 364 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~--~fv~v~~s 364 (575)
..+++.||+|+||||+++++++.+.. ..+.++..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~ 207 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT 207 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCe
Confidence 46779999999999999999988742 34455543
No 164
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.42 E-value=0.0044 Score=63.37 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=26.1
Q ss_pred CCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 323 DDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 323 ~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++.+.++.++ |+||+|+||||+++.||..+
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456666666555 99999999999999999876
No 165
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.42 E-value=0.00077 Score=66.06 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=34.1
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
..++++++++++++.++ |.||+|+|||||.++++..+.
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35899999999999888 999999999999999998763
No 166
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.41 E-value=0.00081 Score=66.43 Aligned_cols=37 Identities=27% Similarity=0.527 Sum_probs=33.6
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..+++++++.+.++.++ |+||+|+|||||.++|+..+
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35799999999999777 99999999999999999876
No 167
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.41 E-value=0.0022 Score=60.66 Aligned_cols=33 Identities=36% Similarity=0.615 Sum_probs=26.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEecccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~ 365 (575)
..+.|+||+|+||||++++|++.+|..+ ++..+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~ 62 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEF--AEADA 62 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeE--Ecccc
Confidence 3566999999999999999999987644 44444
No 168
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.40 E-value=0.0014 Score=60.83 Aligned_cols=27 Identities=30% Similarity=0.560 Sum_probs=22.4
Q ss_pred CcccccCccEE-EEcCCCCChHHHHHHH
Q 008176 324 DTVELEKSNIL-LMGPTGSGKTLLAKTL 350 (575)
Q Consensus 324 i~v~i~~~~VL-L~GPpGTGKTtLAraL 350 (575)
+++.++++.++ |+||+|+||||+++++
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHH
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHH
Confidence 46667777766 9999999999999963
No 169
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.39 E-value=0.0015 Score=59.53 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=22.8
Q ss_pred ccEEEEcCCCCChHHHHHHHHH-HhCCCE
Q 008176 331 SNILLMGPTGSGKTLLAKTLAR-YVNVPF 358 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~-~l~~~f 358 (575)
.-++|.|+||+||||+|+.|++ ..+..+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 3578999999999999999998 454433
No 170
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.39 E-value=0.0017 Score=62.61 Aligned_cols=30 Identities=20% Similarity=0.394 Sum_probs=26.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
..++|.|+||+||||+|+.|++.++.+++.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 467899999999999999999999876653
No 171
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.38 E-value=0.0083 Score=58.95 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=23.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEe
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v 361 (575)
.-++++||+|+||||++..++..+ +...+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 345689999999999998887555 4455544
No 172
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.37 E-value=0.00089 Score=67.44 Aligned_cols=37 Identities=30% Similarity=0.433 Sum_probs=33.6
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++.+.++.++ |+||+|+|||||+++|+..+.
T Consensus 33 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999877 999999999999999998763
No 173
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.37 E-value=0.00073 Score=66.69 Aligned_cols=37 Identities=24% Similarity=0.482 Sum_probs=33.2
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++++.++.++ |.||+|+|||||.++|+..+.
T Consensus 20 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4789999999999777 999999999999999998763
No 174
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.36 E-value=0.002 Score=60.34 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.5
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l 354 (575)
-+.|+||+|+||||++++|++..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 34499999999999999999986
No 175
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.36 E-value=0.008 Score=62.70 Aligned_cols=80 Identities=25% Similarity=0.291 Sum_probs=44.6
Q ss_pred Ccc-EEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccc---cccchhhh-------HHHHHhhhchhhHHhhc
Q 008176 330 KSN-ILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAG---YVGEDVES-------ILYKLLTVSDYNVAAAQ 395 (575)
Q Consensus 330 ~~~-VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg---~vGe~~~~-------~l~~lf~~a~~~l~~~~ 395 (575)
++. ++++||||+|||++|..++..+ +...+.++...-.... ..|.+..+ ...+.+......+....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGA 139 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCC
Confidence 444 5599999999999999998554 5566666655421100 01111000 01111111111112245
Q ss_pred cCeEeehhHhhhhH
Q 008176 396 QGIVYIDEVDKITK 409 (575)
Q Consensus 396 ~~ILfIDEID~l~~ 409 (575)
+.+|+||++..+..
T Consensus 140 ~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 140 LDIIVIDSVAALVP 153 (349)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcChHhhcc
Confidence 78999999999874
No 176
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.34 E-value=0.0008 Score=67.63 Aligned_cols=37 Identities=22% Similarity=0.510 Sum_probs=33.4
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++++.++.++ |+||+|+|||||+++|+..+.
T Consensus 38 ~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 4789999999999877 999999999999999998764
No 177
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.34 E-value=0.00087 Score=70.54 Aligned_cols=37 Identities=32% Similarity=0.591 Sum_probs=33.6
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++++.++.++ |.||+|||||||.++|+....
T Consensus 18 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 4789999999999887 999999999999999998763
No 178
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.34 E-value=0.00096 Score=66.72 Aligned_cols=37 Identities=30% Similarity=0.431 Sum_probs=33.6
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++.+.++.++ |+||+|+|||||+++|+..+.
T Consensus 34 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 5899999999999777 999999999999999998763
No 179
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.31 E-value=0.002 Score=60.46 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=26.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEe
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v 361 (575)
..++|+|++|+||||+++.|++.++.+++..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 3577999999999999999999998766543
No 180
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.31 E-value=0.0012 Score=65.58 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=32.3
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHH
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~ 353 (575)
.+++++++++.++.++ |.||+|+|||||+++|+..
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999887 9999999999999999986
No 181
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.31 E-value=0.00081 Score=66.76 Aligned_cols=37 Identities=24% Similarity=0.524 Sum_probs=33.7
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++.+.++.++ |+||+|+|||||+++|+..+.
T Consensus 23 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999887 999999999999999998764
No 182
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.31 E-value=0.0019 Score=61.92 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=27.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEe
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v 361 (575)
..++|+|+||+||||+|+.||+.++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 3578999999999999999999998877643
No 183
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.30 E-value=0.0013 Score=63.53 Aligned_cols=35 Identities=29% Similarity=0.352 Sum_probs=20.0
Q ss_pred CCCCCcccccCccEE-EEcCCCCChHHHHHHHH-HHh
Q 008176 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLA-RYV 354 (575)
Q Consensus 320 ~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA-~~l 354 (575)
..+++++.+.++.++ |+||+|+||||+++.|+ +.+
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 346778888888766 99999999999999999 875
No 184
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.29 E-value=0.0024 Score=59.33 Aligned_cols=28 Identities=18% Similarity=0.501 Sum_probs=25.1
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEE
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv 359 (575)
.++|.|++|+||||+++.|++.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 3679999999999999999999987665
No 185
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.29 E-value=0.001 Score=68.54 Aligned_cols=37 Identities=24% Similarity=0.465 Sum_probs=31.2
Q ss_pred CCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhCC
Q 008176 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV 356 (575)
Q Consensus 320 ~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~ 356 (575)
+|+++++.++++.++ |+||+|+|||||+++|++.+..
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G 152 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGG 152 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTC
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhcCc
Confidence 456677788888777 9999999999999999998833
No 186
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.29 E-value=0.00099 Score=66.39 Aligned_cols=37 Identities=30% Similarity=0.489 Sum_probs=33.1
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++.+.++.++ |.||+|+|||||.++++..+.
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4788999999999777 999999999999999998763
No 187
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.29 E-value=0.001 Score=70.54 Aligned_cols=37 Identities=22% Similarity=0.464 Sum_probs=33.7
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++.+.++.++ |.||+|||||||.++|+....
T Consensus 17 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 4789999999999888 999999999999999998763
No 188
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.28 E-value=0.0023 Score=61.00 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=26.4
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEe
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v 361 (575)
.++|.|+||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999998877644
No 189
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.28 E-value=0.00091 Score=66.92 Aligned_cols=37 Identities=27% Similarity=0.577 Sum_probs=33.4
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++++.++.++ |.||+|+|||||.++|+....
T Consensus 29 ~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999999999877 999999999999999998763
No 190
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.28 E-value=0.0016 Score=62.43 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=25.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv 359 (575)
..++|.|+||+||||+++.||+.++..++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 46889999999999999999999986553
No 191
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.28 E-value=0.0058 Score=66.81 Aligned_cols=48 Identities=25% Similarity=0.362 Sum_probs=35.8
Q ss_pred CCCCCCCcc-cccCccEE-EEcCCCCChHHHHHH--HHHHh--CCCEEEecccc
Q 008176 318 TDGVDDDTV-ELEKSNIL-LMGPTGSGKTLLAKT--LARYV--NVPFVIADATT 365 (575)
Q Consensus 318 ~~~l~~i~v-~i~~~~VL-L~GPpGTGKTtLAra--LA~~l--~~~fv~v~~s~ 365 (575)
-.+|+++++ .++++.++ |.||+|+|||||++. ++... +..-+.+++.+
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 356888888 88877666 999999999999999 55554 34455566544
No 192
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.28 E-value=0.0013 Score=65.97 Aligned_cols=36 Identities=31% Similarity=0.486 Sum_probs=32.7
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |+||+|+|||||+++|+...
T Consensus 34 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999877 99999999999999999873
No 193
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.27 E-value=0.0034 Score=57.83 Aligned_cols=30 Identities=37% Similarity=0.417 Sum_probs=26.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHh---CCCEEEec
Q 008176 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~ 362 (575)
++|+|++|+||||+++.|++.+ +.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6799999999999999999988 88887654
No 194
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.26 E-value=0.0012 Score=69.35 Aligned_cols=38 Identities=26% Similarity=0.546 Sum_probs=34.1
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
..+++++++++.++.++ |.||+|||||||.++|+....
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35799999999999887 999999999999999998763
No 195
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.25 E-value=0.00079 Score=65.64 Aligned_cols=37 Identities=38% Similarity=0.657 Sum_probs=33.3
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++++.++.++ |.||+|+|||||.++++..+.
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999998777 999999999999999998764
No 196
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.24 E-value=0.00092 Score=67.71 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=33.3
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++++.++.++ |+||+|+|||||.++|+..+.
T Consensus 35 ~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4789999999999877 999999999999999998763
No 197
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.24 E-value=0.00099 Score=66.79 Aligned_cols=36 Identities=25% Similarity=0.495 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |+||+|+|||||.++|+..+
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4789999999999887 99999999999999999776
No 198
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.22 E-value=0.0031 Score=60.02 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=25.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv 359 (575)
..+.|+||+|+||||+++.|++.++.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 35779999999999999999999887664
No 199
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.21 E-value=0.004 Score=57.47 Aligned_cols=36 Identities=28% Similarity=0.583 Sum_probs=30.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l 366 (575)
..+.|+|++|+||||+++.+++.+ |.+++.++...+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 356699999999999999999987 888887775443
No 200
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.20 E-value=0.0026 Score=62.49 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=26.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEe
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v 361 (575)
..++|+||||+||||+|+.|++.++.+++..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4688999999999999999999988776543
No 201
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.18 E-value=0.022 Score=59.63 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=21.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
+.++++||+|+||||+.+++++.+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 567799999999999999998876
No 202
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.17 E-value=0.001 Score=66.26 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=32.9
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++.++.++ |.||+|+|||||.++++..+
T Consensus 19 ~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred eEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999877 99999999999999999876
No 203
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.16 E-value=0.0063 Score=61.51 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=28.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l 366 (575)
..++|.||||+||||+|+.+++.++..++.+++..+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 457799999999999999999988545566766443
No 204
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.13 E-value=0.0034 Score=59.29 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=26.7
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccc
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l 366 (575)
.+.|.||+|+||||++++|++.+ |...+.++..++
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 45599999999999999999988 444345555444
No 205
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.13 E-value=0.0014 Score=69.01 Aligned_cols=37 Identities=27% Similarity=0.574 Sum_probs=33.5
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++++.++.++ |.||+|||||||.++||....
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 4789999999999887 999999999999999998763
No 206
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.12 E-value=0.0015 Score=69.41 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=33.8
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..+++++++.+.++.++ |.||+|||||||.++|+...
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 45899999999999888 99999999999999999865
No 207
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.12 E-value=0.0035 Score=60.62 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=25.0
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEE
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv 359 (575)
.++|.||||+||+|.|+.||+.++.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 3679999999999999999999987764
No 208
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.11 E-value=0.0015 Score=68.80 Aligned_cols=37 Identities=32% Similarity=0.528 Sum_probs=33.3
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++++.++.++ |.||+|||||||.++|+....
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 4689999999998887 999999999999999998763
No 209
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.10 E-value=0.0022 Score=59.03 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=21.9
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhC
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
.++|.|+||+||||+|+.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999875
No 210
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.10 E-value=0.0045 Score=57.37 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=25.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHh---CCCEEEec
Q 008176 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~ 362 (575)
+.|+|++|+||||+++.|++.+ +.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 6799999999999999999998 88876543
No 211
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.09 E-value=0.0016 Score=64.37 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=31.2
Q ss_pred CCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 320 ~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.++++++++.+ .++ |.||+|+|||||.++++....
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 37899999998 777 999999999999999998763
No 212
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.08 E-value=0.0034 Score=65.15 Aligned_cols=33 Identities=42% Similarity=0.608 Sum_probs=29.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEecc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~ 363 (575)
..++|+||+|+|||++|+.||+.++..++.+|.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 467899999999999999999999888877654
No 213
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.08 E-value=0.0029 Score=59.47 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=24.8
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEe
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v 361 (575)
.+.|+|++|+||||+++.|++ ++.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 477999999999999999999 88766543
No 214
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.07 E-value=0.0015 Score=68.92 Aligned_cols=37 Identities=27% Similarity=0.529 Sum_probs=33.3
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++++.++.++ |.||+|||||||.++||....
T Consensus 25 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4689999999998887 999999999999999998763
No 215
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.05 E-value=0.0033 Score=60.65 Aligned_cols=29 Identities=31% Similarity=0.537 Sum_probs=25.2
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
.++|.|+||+||||+|+.|++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 37899999999999999999999876543
No 216
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.05 E-value=0.0015 Score=68.90 Aligned_cols=37 Identities=27% Similarity=0.557 Sum_probs=33.3
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++++.++.++ |.||+|||||||.++||....
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 4789999999998887 999999999999999998763
No 217
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.03 E-value=0.0017 Score=68.61 Aligned_cols=37 Identities=16% Similarity=0.433 Sum_probs=33.8
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++++.++.++ |+||+|+|||||+++|+....
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 4789999999999888 999999999999999998763
No 218
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.00 E-value=0.0017 Score=66.24 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=33.0
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+.++.++ |+||+|+|||||.++|+..+
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 5789999999999877 99999999999999999876
No 219
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.99 E-value=0.0043 Score=60.72 Aligned_cols=29 Identities=24% Similarity=0.411 Sum_probs=24.8
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv 359 (575)
.-++|.||||+||+|.|+.|++.++.+.+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 34568999999999999999999987654
No 220
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.98 E-value=0.0039 Score=58.05 Aligned_cols=29 Identities=31% Similarity=0.414 Sum_probs=24.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
..+.|.|++|+||||+++.|++. |.+++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 45679999999999999999998 777653
No 221
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.97 E-value=0.0039 Score=59.29 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=23.0
Q ss_pred cccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 327 ELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 327 ~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
++.++.++ |+||+|+|||||+++|+..+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45556666 999999999999999999874
No 222
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.96 E-value=0.0036 Score=58.52 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.9
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l 354 (575)
-+.|+||+|+||||+++.|++.+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 45699999999999999999876
No 223
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.94 E-value=0.0038 Score=58.83 Aligned_cols=28 Identities=39% Similarity=0.540 Sum_probs=24.2
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
.+.|+|++|+||||+++.+++ +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 466999999999999999998 7877753
No 224
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.93 E-value=0.0047 Score=57.74 Aligned_cols=29 Identities=31% Similarity=0.607 Sum_probs=26.1
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
.+.|.|++|+||||+++.|++.++.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 56799999999999999999999988764
No 225
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.92 E-value=0.0046 Score=57.77 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=26.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh-CCCEEEec
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV-NVPFVIAD 362 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l-~~~fv~v~ 362 (575)
..++|+|++|+||||+++.|++.+ +.+++.++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 457799999999999999999988 46666544
No 226
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.90 E-value=0.0014 Score=68.70 Aligned_cols=36 Identities=31% Similarity=0.647 Sum_probs=33.0
Q ss_pred CCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 320 ~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
+++++++++.++.++ |.||+|||||||.++||....
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 789999999998887 999999999999999998763
No 227
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.90 E-value=0.0052 Score=60.84 Aligned_cols=36 Identities=28% Similarity=0.490 Sum_probs=29.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH---hCCCEEEeccccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY---VNVPFVIADATTL 366 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~---l~~~fv~v~~s~l 366 (575)
.-++|.|+||+||||+|+.|++. .+.+++.++...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 35779999999999999999987 6777775565443
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.90 E-value=0.02 Score=61.56 Aligned_cols=35 Identities=34% Similarity=0.382 Sum_probs=27.4
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccc
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s 364 (575)
+..++++|++|+||||++..||..+ +..+..+++.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 4566799999999999999999766 5666555554
No 229
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.88 E-value=0.0056 Score=59.69 Aligned_cols=29 Identities=24% Similarity=0.552 Sum_probs=24.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv 359 (575)
..+.|+||+|+||||++++|++.++....
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 45779999999999999999998876543
No 230
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.85 E-value=0.012 Score=61.93 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=25.9
Q ss_pred CCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 323 DDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 323 ~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++.+.++.++ |+||+|+||||+++.||..+
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 355656656555 99999999999999999876
No 231
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.84 E-value=0.0012 Score=69.15 Aligned_cols=35 Identities=26% Similarity=0.606 Sum_probs=32.4
Q ss_pred CCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 320 ~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
+++++++++.++.++ |.||+|||||||.++||...
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 688999999998887 99999999999999999876
No 232
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.82 E-value=0.0053 Score=57.36 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=23.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
..++|.|+||+||||+|+.|++.++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 357799999999999999999988663
No 233
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.73 E-value=0.0034 Score=62.86 Aligned_cols=45 Identities=18% Similarity=0.280 Sum_probs=35.4
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh----CCCEEEecc
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV----NVPFVIADA 363 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l----~~~fv~v~~ 363 (575)
.+|+++...+.++.++ |.||||+||||+++.++..+ |.+++.++.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4688888888888776 99999999999999998765 335554443
No 234
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.73 E-value=0.0052 Score=64.65 Aligned_cols=30 Identities=30% Similarity=0.591 Sum_probs=25.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
.+++|+|++|+||||++++||+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 368899999999999999999998776633
No 235
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.70 E-value=0.0023 Score=64.22 Aligned_cols=35 Identities=26% Similarity=0.565 Sum_probs=31.5
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++++. +.++ |.||+|+|||||.++++...
T Consensus 19 ~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 19 FSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 46889999999 8666 99999999999999999876
No 236
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.65 E-value=0.011 Score=64.92 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=27.8
Q ss_pred CCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 322 DDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 322 ~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
+++++.+.++.++ |+|++|+||||+++.|+..+
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 4667777777666 99999999999999999876
No 237
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.63 E-value=0.0032 Score=59.15 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
..++|+|++|+||||+++.|++.++.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 457799999999999999999887543
No 238
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.57 E-value=0.0051 Score=64.24 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=28.2
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEeccc
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s 364 (575)
.++|+||+|+|||+|+..||+.++..++..|.-
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 567999999999999999999998877665543
No 239
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.56 E-value=0.0074 Score=55.57 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=28.0
Q ss_pred CCCcccccCccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 322 ~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
+++.+.+.++-.+|+||+|+|||+++++|+..++
T Consensus 18 ~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCSSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 4456666667667999999999999999998875
No 240
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.55 E-value=0.0075 Score=56.08 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=21.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
.-+.|+||+|+|||||+++|++...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3566999999999999999998764
No 241
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.55 E-value=0.019 Score=56.05 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=27.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s 364 (575)
..+++.||+|+|||.+|.+++...+...+.+..+
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 4589999999999999999988877666555443
No 242
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.54 E-value=0.0088 Score=59.17 Aligned_cols=29 Identities=28% Similarity=0.578 Sum_probs=25.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv 359 (575)
..+.|.||+|+||||+++.|++.++.+++
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 46779999999999999999999987664
No 243
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.53 E-value=0.0077 Score=70.53 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=30.5
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHH
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~ 353 (575)
..+++++++.+.++.++ |+||+|+||||+.|.++..
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 56788999998776665 9999999999999999743
No 244
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.52 E-value=0.0077 Score=56.98 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=22.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
..++|+||+|+||||+++.|++.+.
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4677999999999999999999874
No 245
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.50 E-value=0.0081 Score=57.10 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=21.2
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhC
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
-+.|.||+|+|||||+++|+..+.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 445999999999999999999874
No 246
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.49 E-value=0.022 Score=59.87 Aligned_cols=78 Identities=21% Similarity=0.238 Sum_probs=43.8
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccc---cccchhh-------hHHHHHhhhchhhHHhhccCe
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAG---YVGEDVE-------SILYKLLTVSDYNVAAAQQGI 398 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg---~vGe~~~-------~~l~~lf~~a~~~l~~~~~~I 398 (575)
-++++|+||+|||++|..++..+ +.+++.++...-.... ..|.+.. ....+.+...+..+......+
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~l 155 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDV 155 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCE
Confidence 45599999999999999887654 5677777765421110 0111100 001111111111112245689
Q ss_pred EeehhHhhhhH
Q 008176 399 VYIDEVDKITK 409 (575)
Q Consensus 399 LfIDEID~l~~ 409 (575)
|+||.+..+..
T Consensus 156 VVIDsl~~l~~ 166 (366)
T 1xp8_A 156 VVVDSVAALTP 166 (366)
T ss_dssp EEEECTTTCCC
T ss_pred EEEeChHHhcc
Confidence 99999999874
No 247
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.47 E-value=0.0079 Score=57.42 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=24.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 333 ILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
+.|+|++||||||+++.+++.+|.+++.
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 4499999999999999999998887753
No 248
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.47 E-value=0.032 Score=69.96 Aligned_cols=81 Identities=22% Similarity=0.266 Sum_probs=49.0
Q ss_pred cCccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccc---cccchh----------hhHHHHHhhhchhhHH
Q 008176 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAG---YVGEDV----------ESILYKLLTVSDYNVA 392 (575)
Q Consensus 329 ~~~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg---~vGe~~----------~~~l~~lf~~a~~~l~ 392 (575)
+...++|+||||||||++|.+++... |.+.+.++..+..+.- ..|-+. ........ +....
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~---~~l~~ 1156 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC---DALAR 1156 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHH---HHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHH---HHHHH
Confidence 44577899999999999999997543 6777778877643211 111110 00001110 01112
Q ss_pred hhccCeEeehhHhhhhHhhh
Q 008176 393 AAQQGIVYIDEVDKITKKAE 412 (575)
Q Consensus 393 ~~~~~ILfIDEID~l~~~r~ 412 (575)
...+.+|+|||+..+.+.++
T Consensus 1157 ~~~~dlvVIDsl~~L~~~~e 1176 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPKAE 1176 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHH
T ss_pred hCCCCEEEECCccccccccc
Confidence 34688999999999966544
No 249
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.45 E-value=0.031 Score=52.83 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=24.4
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh---CCCEEEec
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~ 362 (575)
-+.+.|++|+||||+++.++..+ +.+++..+
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 35599999999999999999876 55555443
No 250
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.44 E-value=0.0097 Score=58.66 Aligned_cols=28 Identities=39% Similarity=0.586 Sum_probs=24.8
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEE
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv 359 (575)
.+.|.||+|+||||+++.|++.++..++
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 4569999999999999999999987664
No 251
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.43 E-value=0.0091 Score=55.36 Aligned_cols=35 Identities=31% Similarity=0.375 Sum_probs=26.8
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEecccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~ 365 (575)
..++|+|++|+||||+++.+++.+ +.++..++...
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 456699999999999999999887 34455555443
No 252
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.41 E-value=0.044 Score=57.30 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=44.0
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccccc---cccchhhh-------HHHHHhhhchhhHHhhccCe
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAG---YVGEDVES-------ILYKLLTVSDYNVAAAQQGI 398 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~sg---~vGe~~~~-------~l~~lf~~a~~~l~~~~~~I 398 (575)
-++++|+||+|||++|..++..+ +.+.+.++...-.... -.|.+..+ .........+.........+
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~l 144 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 144 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCE
Confidence 45699999999999999988654 5677777764421100 00110000 01111111111112345789
Q ss_pred EeehhHhhhhH
Q 008176 399 VYIDEVDKITK 409 (575)
Q Consensus 399 LfIDEID~l~~ 409 (575)
|+||.+..+..
T Consensus 145 VVIDsl~~l~~ 155 (356)
T 1u94_A 145 IVVDSVAALTP 155 (356)
T ss_dssp EEEECGGGCCC
T ss_pred EEEcCHHHhcc
Confidence 99999999874
No 253
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.40 E-value=0.0084 Score=57.06 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=24.2
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
.+.|+|++|+||||+++.|++ ++.+++.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 567999999999999999998 7776654
No 254
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.38 E-value=0.0076 Score=56.86 Aligned_cols=24 Identities=50% Similarity=0.565 Sum_probs=21.7
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhC
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
.+.|.||+|+||||+++.|++.++
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 355999999999999999999886
No 255
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.38 E-value=0.008 Score=55.80 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=24.6
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEecccc
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~ 365 (575)
-++|.||+|+||||+++.|++..+. .+.++..+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~ 36 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDI 36 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccc
Confidence 4679999999999999999986543 23344443
No 256
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.36 E-value=0.0059 Score=61.04 Aligned_cols=33 Identities=36% Similarity=0.507 Sum_probs=24.8
Q ss_pred CCCCCcccccCc-cEEEEcCCCCChHHHHHHHHHHh
Q 008176 320 GVDDDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 320 ~l~~i~v~i~~~-~VLL~GPpGTGKTtLAraLA~~l 354 (575)
++++++ +.++ .++++||+|+||||+++++++.+
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 344444 2334 45699999999999999999876
No 257
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.35 E-value=0.01 Score=56.37 Aligned_cols=30 Identities=37% Similarity=0.535 Sum_probs=26.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
..+.|+|++|+||||+++.|++.++.+++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 357899999999999999999999887753
No 258
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.34 E-value=0.024 Score=58.00 Aligned_cols=34 Identities=32% Similarity=0.318 Sum_probs=26.5
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh---------CCCEEEecccc
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV---------NVPFVIADATT 365 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l---------~~~fv~v~~s~ 365 (575)
-++++||||+|||++|..++..+ +...+.++...
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45599999999999999998764 44566666654
No 259
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.32 E-value=0.008 Score=56.73 Aligned_cols=28 Identities=43% Similarity=0.509 Sum_probs=23.0
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh-CCCEE
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV-NVPFV 359 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l-~~~fv 359 (575)
-+.+.|++|+||||+++.|++.+ +..++
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 45599999999999999999977 44443
No 260
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.27 E-value=0.01 Score=55.44 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.4
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhC
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
-+.|.||+|+||||++++|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 467999999999999999998763
No 261
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.26 E-value=0.0095 Score=56.34 Aligned_cols=26 Identities=54% Similarity=0.644 Sum_probs=21.4
Q ss_pred cCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 329 EKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 329 ~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
+++.++ |+||+|+|||||++.++..+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345455 99999999999999999854
No 262
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.26 E-value=0.0097 Score=56.72 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.4
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhC
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
-+.|.||+|+||||+++.|++.+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 456999999999999999998874
No 263
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.25 E-value=0.046 Score=59.04 Aligned_cols=37 Identities=32% Similarity=0.442 Sum_probs=28.8
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccc
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l 366 (575)
+..++++|++|+||||++..||..+ +..+..+++...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 4567799999999999999999766 566666665543
No 264
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.24 E-value=0.017 Score=54.27 Aligned_cols=34 Identities=26% Similarity=0.242 Sum_probs=27.0
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEecccc
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~ 365 (575)
-++|+||||+|||++++.++...+...+.++...
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4559999999999999999985566666666544
No 265
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.24 E-value=0.0081 Score=66.58 Aligned_cols=48 Identities=21% Similarity=0.433 Sum_probs=38.0
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhCC--CEEEecccc
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATT 365 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~--~fv~v~~s~ 365 (575)
..++++++++++++.++ ++||+|+|||||++++++.... --+.+++.+
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD 406 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 45899999999999777 9999999999999999987632 134455433
No 266
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.20 E-value=0.011 Score=55.62 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
..++|+|++|+||||+++.|++.++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577999999999999999998764
No 267
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.15 E-value=0.011 Score=56.01 Aligned_cols=25 Identities=36% Similarity=0.604 Sum_probs=22.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
..+.|+||+|+|||||++.|++...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4677999999999999999998764
No 268
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.14 E-value=0.037 Score=57.02 Aligned_cols=43 Identities=30% Similarity=0.393 Sum_probs=31.0
Q ss_pred CCCcccccCccEE-EEcCCCCChHHHHHHHHHHh---CCCEEEeccc
Q 008176 322 DDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (575)
Q Consensus 322 ~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l---~~~fv~v~~s 364 (575)
+++++...++.++ ++|++|+||||++..||..+ +..+..+++.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3455655555544 99999999999999999766 5566555543
No 269
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.14 E-value=0.0087 Score=58.28 Aligned_cols=42 Identities=21% Similarity=0.326 Sum_probs=33.1
Q ss_pred CCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhCCCEEEec
Q 008176 320 GVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (575)
Q Consensus 320 ~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~ 362 (575)
.+.+.-+.+....++|.||+|+|||++|..+++... .++..|
T Consensus 24 ~lHa~~v~~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 24 SMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp CEESEEEEETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred eeeEEEEEECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 456666777778899999999999999999998765 554433
No 270
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.14 E-value=0.096 Score=50.58 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=26.3
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHh---CCCEEEec
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~ 362 (575)
++.+++++.+|.||||+|-++|-.. |..+..++
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4788899999999999999997544 66666553
No 271
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.14 E-value=0.023 Score=70.29 Aligned_cols=79 Identities=22% Similarity=0.274 Sum_probs=47.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccccc---cccccchh-------hhHHHHHhhhchhhHHhhccC
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYVGEDV-------ESILYKLLTVSDYNVAAAQQG 397 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l~~---sg~vGe~~-------~~~l~~lf~~a~~~l~~~~~~ 397 (575)
..++|.||||+|||++|..+|..+ +.+++.++..+... +...|.+. ...+.+.+...+..+....+.
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~~~~ 812 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 812 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHHccCCC
Confidence 456699999999999999998654 45677777665321 01111100 011223333322222335688
Q ss_pred eEeehhHhhhhH
Q 008176 398 IVYIDEVDKITK 409 (575)
Q Consensus 398 ILfIDEID~l~~ 409 (575)
+|+||++..+.+
T Consensus 813 lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 813 VIVVDSVAALTP 824 (1706)
T ss_dssp EEEESCSTTCCC
T ss_pred EEEEechhhhcc
Confidence 999999999874
No 272
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.09 E-value=0.014 Score=60.48 Aligned_cols=33 Identities=45% Similarity=0.679 Sum_probs=27.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEecc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~ 363 (575)
.-+++.||+|+|||+||..+|+.++..++..|.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 356799999999999999999999877766544
No 273
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.08 E-value=0.013 Score=56.66 Aligned_cols=29 Identities=31% Similarity=0.557 Sum_probs=25.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv 359 (575)
..+.|+|++|+||||+++.|++.++.+++
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~ 45 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYL 45 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 45679999999999999999999987765
No 274
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.08 E-value=0.021 Score=59.34 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=26.5
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHh-----CCCEEEecccc
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATT 365 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l-----~~~fv~v~~s~ 365 (575)
++-+++.||||+|||+|+-.++..+ +...+.++..+
T Consensus 28 ~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 28 SGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp SEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 3456799999999999987765432 55677777665
No 275
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.07 E-value=0.013 Score=57.40 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=23.5
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
.|.|.|++|+||||+|+.|++.++.+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 46699999999999999999998865
No 276
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.97 E-value=0.0093 Score=59.53 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=23.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh-CCCEE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV-NVPFV 359 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l-~~~fv 359 (575)
.-++|.|+||+||||+|+.|++.+ +..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 357899999999999999999864 54444
No 277
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.92 E-value=0.014 Score=61.08 Aligned_cols=31 Identities=39% Similarity=0.553 Sum_probs=26.2
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEec
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~ 362 (575)
.+++.||+|+|||++|+.||+.++..++..|
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 5679999999999999999999986555444
No 278
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.91 E-value=0.018 Score=54.74 Aligned_cols=36 Identities=31% Similarity=0.321 Sum_probs=28.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhC----CCEEEeccccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTL 366 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~----~~fv~v~~s~l 366 (575)
..++|.|++|+||||+++.|++.++ .+++.++...+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 3566999999999999999998764 45666765443
No 279
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.89 E-value=0.0075 Score=66.85 Aligned_cols=48 Identities=19% Similarity=0.486 Sum_probs=38.4
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhCCC--EEEecccc
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATT 365 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~~--fv~v~~s~ 365 (575)
..++++++++++++.++ |+||+|+|||||++++++..... -+.+++.+
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD 406 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEE
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEE
Confidence 45899999999999777 99999999999999999887432 24455443
No 280
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.86 E-value=0.015 Score=60.28 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=26.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEec
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~ 362 (575)
.-+++.||+|+|||+||..||+.++..++..|
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 34679999999999999999998876665444
No 281
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.85 E-value=0.017 Score=56.38 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=23.8
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhC--CCEEE
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVN--VPFVI 360 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~--~~fv~ 360 (575)
-++|.|++|+||||+++.|++.++ .+++.
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 455999999999999999999885 45543
No 282
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.83 E-value=0.017 Score=67.82 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=28.8
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHH
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~ 352 (575)
.-+++++++.+..+.++ |+||+|+||||+.|.++.
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35677888888766555 999999999999999963
No 283
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.76 E-value=0.046 Score=56.47 Aligned_cols=37 Identities=27% Similarity=0.309 Sum_probs=27.3
Q ss_pred cCccE-EEEcCCCCChHHHHHHHHHHh---------CCCEEEecccc
Q 008176 329 EKSNI-LLMGPTGSGKTLLAKTLARYV---------NVPFVIADATT 365 (575)
Q Consensus 329 ~~~~V-LL~GPpGTGKTtLAraLA~~l---------~~~fv~v~~s~ 365 (575)
+++.+ +|+||||+|||++|..+|... +...+.++...
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 34444 599999999999999998763 44566666654
No 284
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.68 E-value=0.025 Score=53.91 Aligned_cols=28 Identities=36% Similarity=0.559 Sum_probs=23.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~f 358 (575)
+.++|.||+|+|||||++.|.......|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4689999999999999999987764334
No 285
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.67 E-value=0.042 Score=56.82 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.4
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l 354 (575)
-+.|+||+|+||||+++.||..+
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 44499999999999999999876
No 286
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.65 E-value=0.013 Score=61.07 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=25.9
Q ss_pred ccccCccEE-EEcCCCCChHHHHHHHHHHhCCCE
Q 008176 326 VELEKSNIL-LMGPTGSGKTLLAKTLARYVNVPF 358 (575)
Q Consensus 326 v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~~f 358 (575)
+++.++.++ |.||+|+|||||++.|++......
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~ 99 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADI 99 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCE
Confidence 334445555 999999999999999999986543
No 287
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.61 E-value=0.019 Score=55.78 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.1
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhC
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
-+.|+||+|+|||||+++|+....
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 345999999999999999998874
No 288
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.57 E-value=0.023 Score=54.33 Aligned_cols=28 Identities=39% Similarity=0.477 Sum_probs=26.1
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEE
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv 359 (575)
-+.|.|++|||||++++.||+.+|.+|+
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 4669999999999999999999999987
No 289
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.57 E-value=0.015 Score=63.48 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=31.7
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
..+++++++.+.+ .++ |+||+|+|||||.++|+..+
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 4568899999988 666 99999999999999999876
No 290
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.54 E-value=0.054 Score=57.59 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=26.0
Q ss_pred ccCccEE-EEcCCCCChHHHHHHHHHHh---------CCCEEEecccc
Q 008176 328 LEKSNIL-LMGPTGSGKTLLAKTLARYV---------NVPFVIADATT 365 (575)
Q Consensus 328 i~~~~VL-L~GPpGTGKTtLAraLA~~l---------~~~fv~v~~s~ 365 (575)
++++.++ |+||||+|||+|++.++-.. +...+.++..+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 3445444 99999999999999776332 23366666654
No 291
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.50 E-value=0.0085 Score=61.00 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC
Q 008176 333 ILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
+.|.||+|+||||+++.|+..+.
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 44999999999999999999875
No 292
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.46 E-value=0.017 Score=62.23 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=27.4
Q ss_pred CCCcccccCccEE-EEcCCCCChHHHHHHHHHHhCCC
Q 008176 322 DDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 322 ~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~~~ 357 (575)
+++ +.+.++..+ |.||+|||||||++.|++.....
T Consensus 149 d~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 149 NAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp HHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred eee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 444 445556555 99999999999999999998654
No 293
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.46 E-value=0.0078 Score=66.86 Aligned_cols=37 Identities=27% Similarity=0.479 Sum_probs=33.4
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.++++++++++++.++ |+||+|+|||||++++++...
T Consensus 358 ~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4789999999999777 999999999999999998764
No 294
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.44 E-value=0.013 Score=60.70 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=27.7
Q ss_pred CCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 321 VDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 321 l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
++++++.+.++.++ |+||||+|||||.++++..+
T Consensus 45 l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 45 IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 45566666667666 99999999999999999775
No 295
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.44 E-value=0.019 Score=57.67 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=23.5
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEE
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~ 360 (575)
.|.|+|++|+||||+|+.|+ .+|.+++.
T Consensus 77 iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 46699999999999999999 46776643
No 296
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.42 E-value=0.024 Score=54.67 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=21.8
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
.-++|.||+|+|||||+++|++...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3566999999999999999998764
No 297
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.40 E-value=0.023 Score=58.24 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.0
Q ss_pred CccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 330 KSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 330 ~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
++.++ |.||+|+|||||++.|+..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 34455 999999999999999998873
No 298
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.36 E-value=0.021 Score=53.00 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=20.8
Q ss_pred CCCCCcccccCccEEEEcCCCCChHHHHHHHHH
Q 008176 320 GVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 320 ~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~ 352 (575)
+++++++......+++.|++|+|||+|.+.+..
T Consensus 13 ~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCccEEEEECCCCCCHHHHHHHHhc
Confidence 345556666667899999999999999999986
No 299
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.36 E-value=0.025 Score=53.97 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=24.2
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccc
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s 364 (575)
-+++.||||+|||++|..++... +...+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 45699999999999998876443 5566655544
No 300
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.24 E-value=0.015 Score=61.79 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=26.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEeccccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s~l 366 (575)
.-++|+|+||+||||+|+.+++.++..+ ++...+
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~~~--i~~D~~ 292 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTL 292 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTCEE--CCGGGS
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCcEE--EccchH
Confidence 4566999999999999999999886554 444333
No 301
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.18 E-value=0.007 Score=63.25 Aligned_cols=32 Identities=34% Similarity=0.521 Sum_probs=25.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCC--CEEEec
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIAD 362 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~--~fv~v~ 362 (575)
..+++.||+|+||||+++++++.+.. ..+.++
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 36679999999999999999988742 344444
No 302
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.16 E-value=0.018 Score=63.51 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=29.1
Q ss_pred CCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 320 ~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
++++++ .+.++.++ |+||+|+|||||+++|+..+
T Consensus 37 ~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 37 VLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 567777 77778777 99999999999999999765
No 303
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.16 E-value=0.024 Score=60.63 Aligned_cols=32 Identities=34% Similarity=0.474 Sum_probs=26.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCEEEec
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~ 362 (575)
.-+++.||+|+|||+||..||+.++..++..|
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 34679999999999999999999887665543
No 304
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.15 E-value=0.012 Score=55.40 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC
Q 008176 333 ILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
+.|.|++|+||||+++.|++.++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999998874
No 305
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.14 E-value=0.075 Score=57.03 Aligned_cols=35 Identities=46% Similarity=0.604 Sum_probs=28.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEecccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~ 365 (575)
..++++|++|+||||++..||..+ |..+..+++..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 568899999999999999999766 45666666653
No 306
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.05 E-value=0.026 Score=58.60 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=22.7
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCC
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVP 357 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~ 357 (575)
.+.|+||+|+|||||+++|++.+...
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 55699999999999999999987543
No 307
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.95 E-value=0.087 Score=56.27 Aligned_cols=31 Identities=23% Similarity=0.435 Sum_probs=24.1
Q ss_pred CcccccCc-cEEEEcCCCCChHHHHHHHHHHh
Q 008176 324 DTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 324 i~v~i~~~-~VLL~GPpGTGKTtLAraLA~~l 354 (575)
+.+.+.++ .++++||+|+|||+|++.|++.+
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34444444 56699999999999999999865
No 308
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.94 E-value=0.038 Score=57.40 Aligned_cols=41 Identities=39% Similarity=0.448 Sum_probs=31.1
Q ss_pred cccccCccEE-EEcCCCCChHHHHHHHHHHh---------CCCEEEecccc
Q 008176 325 TVELEKSNIL-LMGPTGSGKTLLAKTLARYV---------NVPFVIADATT 365 (575)
Q Consensus 325 ~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l---------~~~fv~v~~s~ 365 (575)
...++++.++ |+||+|+|||||++.++..+ +...+.++..+
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 4556667666 99999999999999999876 23446676654
No 309
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.92 E-value=0.032 Score=53.09 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=20.9
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l 354 (575)
.+.|+||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 46799999999999999999876
No 310
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.78 E-value=0.024 Score=59.44 Aligned_cols=24 Identities=42% Similarity=0.746 Sum_probs=21.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
..++++||+|+||||+++++++.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 457799999999999999999876
No 311
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.72 E-value=0.049 Score=61.30 Aligned_cols=36 Identities=28% Similarity=0.583 Sum_probs=30.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~l 366 (575)
..++|+|.+|+||||+|++|++.+ +.+++.++...+
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 457799999999999999999998 889888875443
No 312
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.64 E-value=0.042 Score=59.74 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
..++|+|++|+|||+|++.++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 467899999999999999987554
No 313
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.57 E-value=0.044 Score=54.18 Aligned_cols=27 Identities=26% Similarity=0.572 Sum_probs=24.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCEE
Q 008176 333 ILLMGPTGSGKTLLAKTLARYVNVPFV 359 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l~~~fv 359 (575)
+-|.|+||+||||+|+.|++.++.+.+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~i 37 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQI 37 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCee
Confidence 449999999999999999999988775
No 314
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.52 E-value=0.048 Score=53.32 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=25.5
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEE
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv 359 (575)
.+.+.|++|||||++|+.||+.++.+++
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~ 43 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFY 43 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEE
Confidence 4559999999999999999999999885
No 315
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.50 E-value=0.06 Score=58.77 Aligned_cols=45 Identities=18% Similarity=0.286 Sum_probs=34.1
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHH
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~ 352 (575)
.++|.++.++.|...+... . -..+.++++|++|+|||+||+.+++
T Consensus 125 ~~vGR~~~l~~L~~~L~~~--------~----------------------~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKL--------K----------------------GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTS--------T----------------------TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred eecccHHHHHHHHHHHhcc--------c----------------------CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 3799999999998887300 0 0124577999999999999999863
No 316
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.48 E-value=0.11 Score=55.65 Aligned_cols=41 Identities=29% Similarity=0.357 Sum_probs=30.1
Q ss_pred CCcccccCccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccc
Q 008176 323 DDTVELEKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (575)
Q Consensus 323 ~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s 364 (575)
++++. ++..++++|++|+||||++..+|..+ +..+..+++.
T Consensus 92 ~i~l~-~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 92 LPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp CCCCC-SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred cccCC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 44555 44556699999999999999999776 4556555553
No 317
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.40 E-value=0.033 Score=62.67 Aligned_cols=30 Identities=33% Similarity=0.595 Sum_probs=27.6
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHH
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLA 347 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLA 347 (575)
..++++++++++++.++ |+||+|+|||||+
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 45799999999999887 9999999999997
No 318
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.35 E-value=0.08 Score=54.21 Aligned_cols=34 Identities=32% Similarity=0.451 Sum_probs=25.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s 364 (575)
.-++++||+|+||||++..+|..+ +..+..+++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 345599999999999999999776 4555555543
No 319
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.35 E-value=0.039 Score=53.25 Aligned_cols=22 Identities=45% Similarity=0.588 Sum_probs=19.7
Q ss_pred cEEEEcCCCCChHHHHHHHHHH
Q 008176 332 NILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-+.|.||+|+|||||+++++..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3459999999999999999976
No 320
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=93.34 E-value=0.013 Score=61.24 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=31.2
Q ss_pred CCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 320 GVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 320 ~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
.++++++.+.++-+.|+||+|+|||||.++|+..++
T Consensus 50 ~l~~v~l~~~~G~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 50 TITQLELELGGGFCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp TEEEEEEECCSSEEEEEESHHHHHHHHTHHHHHHTT
T ss_pred ceeeEEEecCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 467888999888666999999999999999987775
No 321
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.28 E-value=0.024 Score=61.42 Aligned_cols=23 Identities=35% Similarity=0.715 Sum_probs=20.6
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l 354 (575)
-+.|+||+|+|||||+|+|++..
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 45699999999999999999875
No 322
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.22 E-value=0.028 Score=62.93 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=29.1
Q ss_pred CCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 320 ~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
++++++ .+.++.++ |+||+|+|||||+++|+..+
T Consensus 107 ~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 107 VLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 577777 77777777 99999999999999999765
No 323
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.22 E-value=0.027 Score=63.39 Aligned_cols=33 Identities=21% Similarity=0.447 Sum_probs=29.5
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHH
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLA 351 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA 351 (575)
.+++++++.++++.++ |+||+|+|||||++++.
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 4789999999999888 99999999999997653
No 324
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.21 E-value=0.05 Score=55.59 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
..+.|+||+|+||||+++.||..+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 355599999999999999999876
No 325
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.18 E-value=0.27 Score=46.85 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=22.4
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh---CCCEEEe
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v 361 (575)
-.+++||.|+||||.+..++..+ +..++.+
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 34599999999999988887655 5555444
No 326
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.17 E-value=0.024 Score=60.90 Aligned_cols=33 Identities=27% Similarity=0.238 Sum_probs=27.1
Q ss_pred CCCCcccccCccE---EEEcCCCCChHHHHHHHHHH
Q 008176 321 VDDDTVELEKSNI---LLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 321 l~~i~v~i~~~~V---LL~GPpGTGKTtLAraLA~~ 353 (575)
++++++.+.++.+ .|+||+|+|||||+++|++.
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 6667777777875 59999999999999999865
No 327
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.08 E-value=0.035 Score=59.35 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=22.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
+.++++||+|+||||+.++++..+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4567999999999999999998874
No 328
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.07 E-value=0.048 Score=54.08 Aligned_cols=26 Identities=35% Similarity=0.462 Sum_probs=20.9
Q ss_pred cCc-cEEEEcCCCCChHHHHHHHHHHh
Q 008176 329 EKS-NILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 329 ~~~-~VLL~GPpGTGKTtLAraLA~~l 354 (575)
+++ -++|+||+|+|||||++.++..+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 344 45599999999999999998644
No 329
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.04 E-value=0.13 Score=57.41 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=20.1
Q ss_pred cEEEEcCCCCChHHHHH-HHHHHh--CCCEEEecc
Q 008176 332 NILLMGPTGSGKTLLAK-TLARYV--NVPFVIADA 363 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAr-aLA~~l--~~~fv~v~~ 363 (575)
-.|+.||||||||+++- +++..+ +..++.+..
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 46799999999997654 444333 444443333
No 330
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.03 E-value=0.73 Score=43.21 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=17.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~ 352 (575)
.++++.+|+|+|||..+-..+-
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHH
Confidence 5689999999999987765553
No 331
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.01 E-value=0.03 Score=65.91 Aligned_cols=35 Identities=23% Similarity=0.486 Sum_probs=31.4
Q ss_pred CCCCCCCcccccCccEE-EEcCCCCChHHHHHHHHH
Q 008176 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~ 352 (575)
..+++++++.+.++.++ |+||+|+|||||+++|+.
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35788999999999877 999999999999999984
No 332
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.98 E-value=0.12 Score=52.34 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.2
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhC
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
-+.+.|++|+||||+|+.|++.++
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 455999999999999999998874
No 333
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.94 E-value=0.033 Score=61.38 Aligned_cols=34 Identities=32% Similarity=0.600 Sum_probs=27.7
Q ss_pred CCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 321 VDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 321 l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
++.+++.+.++.++ |+||+|+|||||+++|+...
T Consensus 302 l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44455566777777 99999999999999999875
No 334
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.88 E-value=0.058 Score=49.06 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=23.9
Q ss_pred cccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 325 TVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 325 ~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
.+...++-.+++||+|+|||++..||.-.+
T Consensus 18 ~i~f~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 18 VVEFKEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEcCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344445566799999999999999998665
No 335
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.88 E-value=0.072 Score=47.70 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.5
Q ss_pred CccEEEEcCCCCChHHHHHHHHH
Q 008176 330 KSNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~ 352 (575)
...|+++|++|+|||+|++.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999999874
No 336
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.83 E-value=0.11 Score=52.57 Aligned_cols=41 Identities=29% Similarity=0.354 Sum_probs=29.8
Q ss_pred CCCcccccCccEEEEcCCCCChHHHHHHHHHHh---CCCEEEecc
Q 008176 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (575)
Q Consensus 322 ~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~ 363 (575)
+++++. .+..+.++|++|+||||++..+|..+ +..+..+++
T Consensus 91 ~~i~~~-~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 91 RLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp CCCCCC-SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ceeecC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 345565 44455699999999999999999765 455555554
No 337
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.71 E-value=0.056 Score=54.67 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=23.4
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhC---CCEEEeccccc
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTL 366 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~---~~fv~v~~s~l 366 (575)
-+.|.||+|+||||+|+.+++.++ ..+..+++.++
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 355999999999999999998765 33444555443
No 338
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.66 E-value=0.031 Score=52.26 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=22.9
Q ss_pred cccccCccEEEEcCCCCChHHHHHHHHH
Q 008176 325 TVELEKSNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 325 ~v~i~~~~VLL~GPpGTGKTtLAraLA~ 352 (575)
++......++++|++|+|||+|.+++..
T Consensus 20 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 20 GLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred hccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4444557899999999999999999863
No 339
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.66 E-value=0.057 Score=54.14 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=20.9
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l 354 (575)
.+.|+||+|+|||||.++|++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57799999999999999999765
No 340
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.61 E-value=0.038 Score=61.81 Aligned_cols=34 Identities=32% Similarity=0.592 Sum_probs=27.5
Q ss_pred CCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 321 VDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 321 l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
++.+++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 372 l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44445556777777 99999999999999999865
No 341
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=92.55 E-value=0.047 Score=57.04 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=26.2
Q ss_pred CCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 322 ~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
+++++.++.+-.+|+||+|+||||+..+|+-.+
T Consensus 15 ~~~~i~~~~g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 15 KNVDIEFQSGITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceEEecCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 445666666767799999999999999998543
No 342
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.54 E-value=0.1 Score=49.10 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=21.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
..++++|++|+||||++..++..+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467899999999999999998775
No 343
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.54 E-value=0.076 Score=53.97 Aligned_cols=36 Identities=31% Similarity=0.399 Sum_probs=27.2
Q ss_pred CccEEEEcCCCCChHHHHHHHHHHh----CCCEEEecccc
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATT 365 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~l----~~~fv~v~~s~ 365 (575)
+..++|+||+|+||||++..||..+ |..+..+++..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 3466699999999999999998665 44665555543
No 344
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.53 E-value=0.066 Score=49.70 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.++|+|++|+|||||.+.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36789999999999999999875
No 345
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.47 E-value=0.087 Score=57.74 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=26.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhC--CCEEEeccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVN--VPFVIADAT 364 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~--~~fv~v~~s 364 (575)
..+++.||+|+||||++++++..+. ...+.+...
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~ 296 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDT 296 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCc
Confidence 4688999999999999999998874 234555443
No 346
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.45 E-value=0.036 Score=61.13 Aligned_cols=33 Identities=33% Similarity=0.557 Sum_probs=27.2
Q ss_pred CCCcccccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 322 DDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 322 ~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
+.+++.+.++.++ |+||+|+|||||+++|+...
T Consensus 285 ~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 285 VVDNGEAKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EECCEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EeccceECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3345566778777 99999999999999999865
No 347
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.38 E-value=0.065 Score=49.70 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.6
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l 354 (575)
.++|+|++|+|||||++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57799999999999999998754
No 348
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=92.30 E-value=0.12 Score=56.64 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=33.4
Q ss_pred cChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHH
Q 008176 280 IGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 280 vGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~ 352 (575)
+|.++.++.|...+...- . ...+.+.++|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~-------~----------------------~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC-------D----------------------LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT-------T----------------------SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc-------C----------------------CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 599999999998884110 0 0114566999999999999999996
No 349
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.28 E-value=0.053 Score=60.71 Aligned_cols=35 Identities=37% Similarity=0.544 Sum_probs=29.6
Q ss_pred CCCCCcccccCc-----cE-EEEcCCCCChHHHHHHHHHHh
Q 008176 320 GVDDDTVELEKS-----NI-LLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 320 ~l~~i~v~i~~~-----~V-LL~GPpGTGKTtLAraLA~~l 354 (575)
.++++++.+.++ .+ .|.||+|+|||||+++|+...
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCC
Confidence 567788888877 33 499999999999999999876
No 350
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.28 E-value=0.074 Score=54.95 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHhC
Q 008176 333 ILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
+.|.||+|+||||+++.|+..+.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 44999999999999999999875
No 351
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=92.22 E-value=0.59 Score=51.96 Aligned_cols=35 Identities=23% Similarity=0.474 Sum_probs=27.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh-------CCCEEEecccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV-------NVPFVIADATT 365 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l-------~~~fv~v~~s~ 365 (575)
.|+|+.|.+|+|||++++.+...+ ...++.+|...
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 699999999999999999876433 23477777663
No 352
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.18 E-value=0.092 Score=57.57 Aligned_cols=35 Identities=31% Similarity=0.591 Sum_probs=26.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEecccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~ 365 (575)
.-++|+|.||+||||+|+.|++.+ +.+...++..+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 456799999999999999999887 34443444433
No 353
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.13 E-value=0.53 Score=45.32 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=23.0
Q ss_pred EEEEcCCCCChH-HHHHHHHHHh--CCCEEEec
Q 008176 333 ILLMGPTGSGKT-LLAKTLARYV--NVPFVIAD 362 (575)
Q Consensus 333 VLL~GPpGTGKT-tLAraLA~~l--~~~fv~v~ 362 (575)
.+++||.|+||| .|.+++.+.. +..++.+.
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 449999999999 8888887654 55665554
No 354
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=92.09 E-value=0.085 Score=55.26 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=29.2
Q ss_pred CCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 320 GVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 320 ~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
.++++++.+.++-.+|+||+|+|||++.++|+...
T Consensus 16 ~~~~~~~~~~~g~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 16 NLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp TCCSEEEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeeEEEEcCCeEEEECCCCCChhHHHHHHHHhc
Confidence 45677888888866699999999999999998644
No 355
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.08 E-value=0.064 Score=51.20 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=27.3
Q ss_pred CCCCcccccCccEEEEcCCCCChHHHHHHHHHH
Q 008176 321 VDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 321 l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
+.+.-+.+....+||.|++|+||||+|.++.+.
T Consensus 7 lHas~v~v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 7 WHANFLVIDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EESEEEEETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEEECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 444556667789999999999999999999874
No 356
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.06 E-value=0.025 Score=60.51 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.1
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l 354 (575)
.+.|+||+|+|||||.++|++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 45699999999999999999743
No 357
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.05 E-value=0.085 Score=46.29 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.+++.|++|+|||+|++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999999754
No 358
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.04 E-value=0.1 Score=57.28 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=23.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCC
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~ 356 (575)
..++|+|.+||||||+|++||+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 46779999999999999999999974
No 359
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.98 E-value=0.053 Score=60.05 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=27.2
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhC----CCEEEeccccc
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTL 366 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~----~~fv~v~~s~l 366 (575)
.+.|+|++|+||||++++|++.++ ..+..++...+
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred EEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 466999999999999999999884 24544665543
No 360
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=91.98 E-value=0.026 Score=66.54 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=33.4
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHHHHHhC
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l~ 355 (575)
.+++++++.+.++.++ |+||+|+|||||+++|+..+.
T Consensus 687 ~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp CSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999999999877 999999999999999998764
No 361
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.97 E-value=0.15 Score=48.39 Aligned_cols=33 Identities=33% Similarity=0.424 Sum_probs=23.5
Q ss_pred cEEEEcCCCCChHHHHHHHHHH----hCCCEEEeccc
Q 008176 332 NILLMGPTGSGKTLLAKTLARY----VNVPFVIADAT 364 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~----l~~~fv~v~~s 364 (575)
-+++.|+||+|||++|..+|.. .+.+.+.++..
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 4559999999999999876532 25566555543
No 362
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.95 E-value=0.15 Score=51.77 Aligned_cols=41 Identities=27% Similarity=0.286 Sum_probs=30.1
Q ss_pred CcccccCccEEEEcCCCCChHHHHHHHHHHh---CCCEEEeccc
Q 008176 324 DTVELEKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (575)
Q Consensus 324 i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s 364 (575)
+++...+..+++.|++|+||||++..+|..+ +..+..+++.
T Consensus 92 i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 92 VIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp CSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4444444456699999999999999999776 5666656654
No 363
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.95 E-value=0.087 Score=46.23 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.9
Q ss_pred cEEEEcCCCCChHHHHHHHHHH
Q 008176 332 NILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~ 353 (575)
.+++.|++|+|||+|++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999754
No 364
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.90 E-value=0.15 Score=50.38 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=26.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEecc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~ 363 (575)
-++++.|++||||||+|-.+|..+ |..++.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 468899999999999999988665 666654544
No 365
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.82 E-value=0.087 Score=50.96 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=22.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
.-+++.|++|+||||+++.|++.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3577999999999999999999984
No 366
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=91.82 E-value=0.1 Score=58.06 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=29.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhC----CCEEEeccccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTL 366 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~----~~fv~v~~s~l 366 (575)
..++|+|.+|+||||+|++|++.++ .+++.++...+
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 3567999999999999999999875 67777765443
No 367
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.81 E-value=0.28 Score=53.70 Aligned_cols=33 Identities=33% Similarity=0.406 Sum_probs=27.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEecc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~ 363 (575)
..++++|++|+||||++..||..+ |..+..+++
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 467799999999999999999765 566666665
No 368
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.74 E-value=0.12 Score=53.18 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=20.1
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l 354 (575)
.+.+.|+||+||||+++.++..+
T Consensus 58 ~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 58 RLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 45599999999999999998765
No 369
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.72 E-value=0.041 Score=54.09 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
.-++|.|++|+||||+++.|++.+.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567999999999999999999883
No 370
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.68 E-value=0.1 Score=48.78 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
..++++|++|+|||+|++++....
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999998754
No 371
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.67 E-value=0.1 Score=46.04 Aligned_cols=23 Identities=13% Similarity=0.327 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.+++.|++|+|||+|++.+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 372
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.65 E-value=0.092 Score=46.29 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.+++.|++|+|||+|++++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999754
No 373
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.65 E-value=0.098 Score=45.85 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.+++.|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998753
No 374
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.65 E-value=0.048 Score=51.07 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.5
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhC
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
.+.++|++|+|||||++.|++.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 467999999999999999998873
No 375
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.63 E-value=0.1 Score=50.54 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
.-++|.|++|+||||+++.|++.+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 346699999999999999999887
No 376
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.60 E-value=0.094 Score=50.59 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=21.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCEE
Q 008176 333 ILLMGPTGSGKTLLAKTLARYVNVPFV 359 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l~~~fv 359 (575)
+.|.|+.|+||||+++.|++. +..+.
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~-~g~v~ 48 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY-KNDIC 48 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG-TTTEE
T ss_pred EEEECCCCCCHHHHHHHHHhc-cCCeE
Confidence 449999999999999999987 44443
No 377
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.47 E-value=0.1 Score=45.58 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.+++.|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999754
No 378
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.47 E-value=0.098 Score=47.03 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~ 352 (575)
..++|+|++|+|||+|.+++++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999985
No 379
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.27 E-value=0.097 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=17.7
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l 354 (575)
-++|.|++|+||||+++.|++.+
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46699999999999999999877
No 380
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.25 E-value=0.12 Score=48.61 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.5
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l 354 (575)
-+.+.|++|+||||++..++..+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 46699999999999999998775
No 381
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.24 E-value=0.12 Score=48.52 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
.-+.+.|++|+||||+++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 356799999999999999998765
No 382
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.20 E-value=0.071 Score=49.54 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=20.9
Q ss_pred ccccCc-cEEEEcCCCCChHHHHHHHHH
Q 008176 326 VELEKS-NILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 326 v~i~~~-~VLL~GPpGTGKTtLAraLA~ 352 (575)
+.+.++ .+.|+|++|+|||||.+++++
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 334444 466999999999999998864
No 383
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.18 E-value=0.13 Score=46.99 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
..++++|++|+|||+|++++...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999864
No 384
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.18 E-value=0.11 Score=47.14 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~ 352 (575)
..++|+|++|+|||+|.+.++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5788999999999999999986
No 385
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.18 E-value=0.092 Score=48.09 Aligned_cols=21 Identities=43% Similarity=0.779 Sum_probs=19.4
Q ss_pred cEEEEcCCCCChHHHHHHHHH
Q 008176 332 NILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~ 352 (575)
.++++|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999999975
No 386
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.11 E-value=0.12 Score=45.56 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
-.+++.|++|+|||+|++.+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 478999999999999999997643
No 387
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.08 E-value=0.081 Score=53.69 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=19.7
Q ss_pred CCCCCcccccCccEEEEcCCCCChHHHHHHHHHH
Q 008176 320 GVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 320 ~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
+++++++. ++|+||+|+|||||.+.|+..
T Consensus 13 ~l~~~~~~-----I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 13 VKKGFEFT-----LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp -----CEE-----EEEEEETTSSHHHHHHHHHC-
T ss_pred EEcCCCEE-----EEEECCCCCCHHHHHHHHhCC
Confidence 44555544 489999999999999998743
No 388
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.03 E-value=0.12 Score=46.02 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~ 352 (575)
-.++++|++|+|||+|++.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4689999999999999999863
No 389
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.94 E-value=0.14 Score=48.79 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=25.1
Q ss_pred cccccCccEEEEcCCCCChHHHHHHHHHHhCC
Q 008176 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (575)
Q Consensus 325 ~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~~ 356 (575)
.+...++-.+|+||+|+|||++..||.-.++.
T Consensus 18 ~i~f~~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 18 VVEFKEGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEeCCCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 34445566779999999999999999876643
No 390
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.91 E-value=0.13 Score=49.00 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=26.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHhCCCEEEeccc
Q 008176 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l~~~fv~v~~s 364 (575)
+|++|++|+|||++|+.++.. +.+.+.+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 689999999999999999977 7777666653
No 391
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.89 E-value=0.13 Score=45.27 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.+++.|++|+|||+|.+++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999753
No 392
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.89 E-value=0.13 Score=45.41 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.++++|++|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999854
No 393
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.86 E-value=0.13 Score=45.89 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.++++|++|+|||+|.+.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999753
No 394
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.79 E-value=0.13 Score=45.44 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.++++|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999743
No 395
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.78 E-value=0.14 Score=45.81 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
..++++|++|+|||+|++.+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999998753
No 396
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.75 E-value=0.07 Score=56.00 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=28.7
Q ss_pred CCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 318 TDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
+..++++........+.|+||+|+|||||+++|+....
T Consensus 203 ~~gl~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 203 QDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TBTHHHHHHHHTTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CcCHHHHHHhcCCCEEEEECCCCccHHHHHHHHhcccc
Confidence 33455566655555667999999999999999997653
No 397
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.75 E-value=0.8 Score=44.68 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=21.9
Q ss_pred EEEcCCCCChHHHHHHHHHHh---CCCEEEec
Q 008176 334 LLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (575)
Q Consensus 334 LL~GPpGTGKTtLAraLA~~l---~~~fv~v~ 362 (575)
+++|+.|+||||.+..++... +..++.+.
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 389999999999988877544 55655554
No 398
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.72 E-value=0.14 Score=45.03 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=20.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~ 352 (575)
-.+++.|++|+|||+|++++..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999985
No 399
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.68 E-value=0.14 Score=46.15 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.++++|++|+|||+|++.+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999853
No 400
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.63 E-value=0.14 Score=45.24 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~ 352 (575)
-.++++|++|+|||+|++.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999975
No 401
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.62 E-value=0.11 Score=55.50 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=24.6
Q ss_pred CCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 319 DGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
.+++++++.+ .|+|++|+|||||++++++..
T Consensus 25 ~vl~~vsf~I-----~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 25 SVKRGFEFTL-----MVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp TCC-CCCEEE-----EEECCTTSSHHHHHHHHTTCC
T ss_pred EEecCCCEEE-----EEECCCCCcHHHHHHHHhCCC
Confidence 4567777654 899999999999999998653
No 402
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.59 E-value=0.13 Score=55.15 Aligned_cols=25 Identities=40% Similarity=0.741 Sum_probs=22.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhC
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~ 355 (575)
..++|+|.||+||||+++.|++.++
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678999999999999999998764
No 403
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.55 E-value=0.14 Score=45.34 Aligned_cols=20 Identities=40% Similarity=0.763 Sum_probs=18.6
Q ss_pred cEEEEcCCCCChHHHHHHHH
Q 008176 332 NILLMGPTGSGKTLLAKTLA 351 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA 351 (575)
.+++.|++|+|||+|++.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999986
No 404
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.53 E-value=0.15 Score=44.90 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.5
Q ss_pred cEEEEcCCCCChHHHHHHHHHH
Q 008176 332 NILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~ 353 (575)
.+++.|++|+|||+|++.+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999753
No 405
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.49 E-value=0.21 Score=48.62 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=24.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCCCE
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~~f 358 (575)
.-++|.|++|+||||+++.+++.++.+.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 3566999999999999999999997643
No 406
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.37 E-value=0.26 Score=51.30 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=26.1
Q ss_pred cCccEEEEcCCCCChHHHHHHHHHHh---CCCEEEec
Q 008176 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (575)
Q Consensus 329 ~~~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~ 362 (575)
...|+++.||+|+|||++++.++..+ +..++.++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 34799999999999999999997543 44444444
No 407
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.35 E-value=0.15 Score=50.37 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
.-++|.|++|+||||+++.|++.+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 346699999999999999999876
No 408
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.35 E-value=0.23 Score=55.42 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=18.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
+.+++.||||||||+++..+...
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999987766544
No 409
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.29 E-value=0.13 Score=45.35 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=18.9
Q ss_pred ccEEEEcCCCCChHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLA 351 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA 351 (575)
-.++++|++|+|||+|++.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 368999999999999999985
No 410
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.26 E-value=0.16 Score=45.16 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.++++|++|+|||+|++.+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999754
No 411
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.18 E-value=0.18 Score=44.70 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~ 352 (575)
..+++.|++|+|||+|.+.+..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999975
No 412
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.15 E-value=0.15 Score=45.40 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
..+++.|++|+|||+|++++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999864
No 413
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.12 E-value=0.14 Score=52.12 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=25.6
Q ss_pred CCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 323 DDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 323 ~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
.+.+...++-.+|+||+|+|||++.++|.-.+
T Consensus 17 ~~~l~~~~g~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 17 PSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp CEEEECCSSEEEEECCTTTCSTHHHHHHHHTS
T ss_pred CeEEecCCCcEEEECCCCCcHHHHHHHHHHHh
Confidence 34566666656699999999999999998655
No 414
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.10 E-value=0.16 Score=45.56 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
..|+++|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 57899999999999999999853
No 415
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.10 E-value=0.17 Score=45.61 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.++++|++|+|||+|++++...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999854
No 416
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.08 E-value=0.17 Score=45.79 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.|+++|++|+|||+|++++...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 417
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.08 E-value=0.16 Score=45.22 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~ 352 (575)
-.++++|++|+|||+|++.+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999975
No 418
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.05 E-value=0.17 Score=46.02 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.|+++|++|+|||+|++.++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57899999999999999999854
No 419
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.01 E-value=0.11 Score=57.22 Aligned_cols=25 Identities=40% Similarity=0.626 Sum_probs=21.3
Q ss_pred CccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 330 KSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 330 ~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
++.++ |+||+|+|||||+++|+..+
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34555 99999999999999999765
No 420
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.97 E-value=0.31 Score=45.85 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
..++++|.+|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467899999999999999998765
No 421
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.96 E-value=0.17 Score=45.22 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.++++|++|+|||+|++.+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 57899999999999999999753
No 422
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.93 E-value=0.18 Score=53.92 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=30.2
Q ss_pred CCCCcccccCccEE-EEcCCCCChHHHHHHHHHHh----CCCEEEeccc
Q 008176 321 VDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV----NVPFVIADAT 364 (575)
Q Consensus 321 l~~i~v~i~~~~VL-L~GPpGTGKTtLAraLA~~l----~~~fv~v~~s 364 (575)
||.+.-.++++.++ +.|+||+|||+++..+|..+ +.+++.++..
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 34444345556555 99999999999999998643 4566665543
No 423
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.92 E-value=0.18 Score=46.14 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.|+++|++|+|||+|++.+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999999863
No 424
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=89.91 E-value=0.16 Score=45.26 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~ 352 (575)
-.+++.|++|+|||+|++++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4788999999999999999863
No 425
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=89.91 E-value=2.2 Score=43.04 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=17.3
Q ss_pred ccEEEEcCCCCChHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLA 351 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA 351 (575)
.++++.+|+|+|||..+-..+
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 578999999999998765444
No 426
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.86 E-value=0.17 Score=48.99 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.9
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l 354 (575)
-++|.|++|+||||+++.|++.+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46699999999999999999877
No 427
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=89.86 E-value=0.17 Score=58.48 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=28.6
Q ss_pred CCCCCCCcccccCcc-EEEEcCCCCChHHHHHHHHHH
Q 008176 318 TDGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~-VLL~GPpGTGKTtLAraLA~~ 353 (575)
..+++++++. .++. ++|+||+|+||||+.|+++..
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 4577888888 5554 459999999999999999865
No 428
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=89.85 E-value=0.17 Score=45.17 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.8
Q ss_pred ccEEEEcCCCCChHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~ 352 (575)
-.++++|++|+|||+|++.+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4789999999999999999973
No 429
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.84 E-value=0.52 Score=48.76 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
..+.|+|+||+|||||.++++..+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 356699999999999999998764
No 430
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.84 E-value=0.13 Score=57.47 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=22.7
Q ss_pred ccCccEE-EEcCCCCChHHHHHHHHHHh
Q 008176 328 LEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 328 i~~~~VL-L~GPpGTGKTtLAraLA~~l 354 (575)
+.++.++ |+||+|+|||||.++|+..+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3456666 99999999999999999765
No 431
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.82 E-value=0.19 Score=45.07 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
..++++|++|+|||+|++.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999753
No 432
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.82 E-value=0.16 Score=46.16 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
..++|+|++|+|||+|.++++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 433
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.81 E-value=0.18 Score=45.60 Aligned_cols=24 Identities=38% Similarity=0.317 Sum_probs=20.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
-.++++|++|+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 478999999999999999887654
No 434
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.68 E-value=0.19 Score=45.29 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.++++|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999854
No 435
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.64 E-value=0.18 Score=45.94 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.++++|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999864
No 436
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.59 E-value=0.19 Score=49.12 Aligned_cols=26 Identities=38% Similarity=0.465 Sum_probs=21.8
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHhCC
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l~~ 356 (575)
.-+.|.|++|+||||+++.+++.++.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34569999999999999999987643
No 437
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.56 E-value=0.18 Score=45.44 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.+++.|++|+|||+|++.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999754
No 438
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=89.49 E-value=0.27 Score=53.03 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=18.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~ 352 (575)
.-.++.|+||||||++.+.++.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 3456999999999999987764
No 439
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.49 E-value=0.2 Score=44.94 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.++++|++|+|||+|++.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999753
No 440
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=89.49 E-value=0.17 Score=45.72 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.2
Q ss_pred cEEEEcCCCCChHHHHHHHHH
Q 008176 332 NILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~ 352 (575)
.++++|++|+|||+|.+.+.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999999874
No 441
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.44 E-value=0.19 Score=45.82 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~ 352 (575)
..++++|++|+|||+|.+.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999874
No 442
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=89.40 E-value=0.14 Score=57.01 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
+.+++.|+||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 578899999999999988776544
No 443
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=89.36 E-value=0.22 Score=48.44 Aligned_cols=30 Identities=40% Similarity=0.444 Sum_probs=25.5
Q ss_pred cEEEEcCCCCChHHHHHHHHHHhCCCEEEec
Q 008176 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l~~~fv~v~ 362 (575)
.|-|+|..||||||+++.+++ +|.+++..|
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 455999999999999999998 888886444
No 444
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=89.33 E-value=0.29 Score=57.37 Aligned_cols=46 Identities=17% Similarity=0.305 Sum_probs=34.7
Q ss_pred cccChHHHHHHHHHHHHhhhhhHhhhhhcccccCCCCCCCCCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHH
Q 008176 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 278 ~VvGqd~ak~~L~~al~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
.++|.++.++.|.+.+...- -..+-+.|+|+.|+|||+||+.+++.
T Consensus 125 ~~vgR~~~~~~l~~~l~~~~------------------------------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKLN------------------------------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTTT------------------------------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred eeccHHHHHHHHHHHHhhcc------------------------------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 47999999999998884100 01144669999999999999988753
No 445
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.29 E-value=0.2 Score=45.39 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
..+++.|++|+|||+|++.+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57899999999999999998754
No 446
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.27 E-value=0.21 Score=45.53 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.|+++|++|+|||+|++.+...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999754
No 447
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=89.19 E-value=0.22 Score=45.35 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.++++|++|+|||+|++++...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999864
No 448
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.16 E-value=0.34 Score=45.99 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=24.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHh---CCCEEEe
Q 008176 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l---~~~fv~v 361 (575)
+.|.|+-|+||||.++.|++.+ |.+++..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 5689999999999999999877 5566544
No 449
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.16 E-value=0.22 Score=45.74 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
..|+++|++|+|||+|++.+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999999753
No 450
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.15 E-value=0.32 Score=50.29 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=25.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEecc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~ 363 (575)
..+.|+|+||+||||++..++..+ +..+..+++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 457799999999999999998775 555544443
No 451
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.11 E-value=0.22 Score=44.57 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.++++|++|+|||+|.+.+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999753
No 452
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.09 E-value=0.21 Score=54.38 Aligned_cols=32 Identities=31% Similarity=0.409 Sum_probs=23.7
Q ss_pred cEEEEcCCCCChHHHHHHHHHHh---CCCEEEecc
Q 008176 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (575)
Q Consensus 332 ~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~ 363 (575)
.++|.||+|+|||||++.++... +...+.+..
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 45599999999999999998664 334444443
No 453
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.08 E-value=0.36 Score=49.10 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=26.9
Q ss_pred cccCcc-EEEEcCCCCChHHHHHHHHHHh---CCCEEEeccc
Q 008176 327 ELEKSN-ILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (575)
Q Consensus 327 ~i~~~~-VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s 364 (575)
.+.++. +++.|+||+|||++|..+|... +.+.+.++..
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 345554 4599999999999999998543 3455555543
No 454
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.05 E-value=0.23 Score=45.09 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.++++|++|+|||+|++++...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57899999999999999999754
No 455
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=89.05 E-value=0.15 Score=52.28 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=22.5
Q ss_pred ccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 326 VELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 326 v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
+...++-.+|+||+|+|||++..||+-.+
T Consensus 19 i~f~~~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 19 VEFKEGINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EcCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 33445666799999999999999986433
No 456
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=89.01 E-value=0.2 Score=57.53 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=28.4
Q ss_pred CCCCCCCcccccCccEEEEcCCCCChHHHHHHHHHHh
Q 008176 318 TDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 318 ~~~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
..+++++++. ..-++|+||+|+||||+.|.++...
T Consensus 566 ~~vl~disl~--g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 566 EFVPNDLEMA--HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CCCCEEEEES--SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEeeeccCC--CcEEEEECCCCCChHHHHHHHHhhh
Confidence 4567788887 4456699999999999999998653
No 457
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=88.90 E-value=0.23 Score=45.71 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.++++|++|+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999764
No 458
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=88.88 E-value=0.24 Score=45.53 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=20.5
Q ss_pred CccEEEEcCCCCChHHHHHHHHHH
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
.-.++++|++|+|||+|++.+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999887753
No 459
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.84 E-value=0.23 Score=45.62 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.++++|++|+|||+|++.+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999999864
No 460
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=88.84 E-value=0.2 Score=50.71 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=20.4
Q ss_pred cCcc-EEEEcCCCCChHHHHHHHHHH
Q 008176 329 EKSN-ILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 329 ~~~~-VLL~GPpGTGKTtLAraLA~~ 353 (575)
+++. ++++|+||+|||++|..+|..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444 559999999999999999865
No 461
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=88.82 E-value=0.24 Score=47.43 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=23.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHh--CCCEEE
Q 008176 333 ILLMGPTGSGKTLLAKTLARYV--NVPFVI 360 (575)
Q Consensus 333 VLL~GPpGTGKTtLAraLA~~l--~~~fv~ 360 (575)
+.|.|+.|+||||.++.|++.+ +.+++.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~ 34 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIM 34 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEE
Confidence 5699999999999999999988 444443
No 462
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=88.82 E-value=0.18 Score=45.30 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.++++|++|+|||+|++.+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999999864
No 463
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.80 E-value=0.38 Score=46.40 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=26.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh--CCCEEEeccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV--NVPFVIADAT 364 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l--~~~fv~v~~s 364 (575)
..+++.|.+|+||||++..++..+ +..+..++..
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 456699999999999999998765 5555555543
No 464
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=88.80 E-value=0.22 Score=44.73 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~ 352 (575)
..++++|++|+|||+|++.+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 5789999999999999999974
No 465
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=88.77 E-value=0.2 Score=49.33 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
..+.|.|++|+|||||.+++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999999754
No 466
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.70 E-value=0.24 Score=45.12 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~ 352 (575)
-.|+++|++|+|||+|.+.+..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999974
No 467
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=88.64 E-value=0.25 Score=45.24 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.++++|++|+|||+|++.+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47889999999999999999753
No 468
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=88.64 E-value=0.25 Score=45.38 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.|+++|++|+|||+|++.+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 47899999999999999988753
No 469
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=88.63 E-value=0.23 Score=45.62 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.|+++|++|+|||+|++.+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999999753
No 470
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=88.60 E-value=0.25 Score=45.18 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.|+++|++|+|||+|++.+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 47889999999999999999753
No 471
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=88.59 E-value=0.19 Score=51.93 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=28.6
Q ss_pred CCCCCcccccCccEEEEcCCCCChHHHHHHHHHH
Q 008176 320 GVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 320 ~l~~i~v~i~~~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
.+++.-+.+....++|.|++|+|||++|.++.+.
T Consensus 134 ~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 134 SLHGVLVDVYGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEESEEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 4566667777788999999999999999999874
No 472
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.59 E-value=0.23 Score=45.43 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
-.|+++|++|+|||+|++.+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 368999999999999999998654
No 473
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=88.56 E-value=0.25 Score=45.21 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.++++|++|+|||+|.+.+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999999864
No 474
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.53 E-value=0.25 Score=45.59 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.|+++|++|+|||+|++.+...
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 57899999999999999999753
No 475
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=88.45 E-value=0.24 Score=45.57 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.|+++|++|+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998753
No 476
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.43 E-value=0.24 Score=45.15 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~ 352 (575)
-.|+++|++|+|||+|.+++..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 4789999999999999999976
No 477
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=88.34 E-value=0.38 Score=55.47 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=19.1
Q ss_pred CccEEEEcCCCCChHHHHHHHHHH
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
.+..++.||||||||+++..+...
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 356789999999999987776544
No 478
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=88.30 E-value=0.25 Score=45.74 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.|+++|++|+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999753
No 479
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.28 E-value=0.27 Score=45.46 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
..|+++|++|+|||+|++++...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999743
No 480
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=88.28 E-value=0.25 Score=45.72 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
..++++|++|+|||+|++++...
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 57899999999999999999864
No 481
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.12 E-value=0.18 Score=45.38 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=19.1
Q ss_pred ccEEEEcCCCCChHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLA 351 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA 351 (575)
..++++|++|+|||+|.+.+.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 578999999999999998876
No 482
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=88.12 E-value=0.25 Score=47.42 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
..|+|+|++|+|||+|.+++.+.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 57889999999999999999753
No 483
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=88.02 E-value=0.27 Score=44.52 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~ 352 (575)
..+++.|++|+|||+|.+.+..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999874
No 484
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=88.02 E-value=0.24 Score=45.11 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.0
Q ss_pred CccEEEEcCCCCChHHHHHHHHH
Q 008176 330 KSNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~ 352 (575)
...|+++|++|+|||+|++.+..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999998863
No 485
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.00 E-value=0.26 Score=44.84 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=20.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~ 352 (575)
..++++|++|+|||+|.+.+..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999874
No 486
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=87.97 E-value=0.2 Score=45.72 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.7
Q ss_pred CccEEEEcCCCCChHHHHHHHHHH
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
.-.|+++|++|+|||+|.+.+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999998644
No 487
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=87.91 E-value=0.3 Score=45.45 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
..++++|++|+|||+|.+.+...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999854
No 488
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=87.89 E-value=0.16 Score=59.92 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=29.4
Q ss_pred CCCCCCcccccCccEE-EEcCCCCChHHHHHHH
Q 008176 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTL 350 (575)
Q Consensus 319 ~~l~~i~v~i~~~~VL-L~GPpGTGKTtLAraL 350 (575)
..++++++.++.+.++ ++|++|+|||||++.+
T Consensus 656 ~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 656 HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTT
T ss_pred ccccCceEEECCCCEEEEEcCCCCCHHHHHHHH
Confidence 3689999999999888 9999999999999985
No 489
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=87.86 E-value=0.23 Score=45.04 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=20.0
Q ss_pred ccEEEEcCCCCChHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~ 352 (575)
..++++|++|+|||+|.+.+..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999874
No 490
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.84 E-value=0.25 Score=45.11 Aligned_cols=23 Identities=48% Similarity=0.586 Sum_probs=20.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
..++++|++|+|||+|.+.+...
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57889999999999999998643
No 491
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=87.82 E-value=0.4 Score=52.90 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=27.1
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh---CCCEEEecccc
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l---~~~fv~v~~s~ 365 (575)
..++|+|++|+||||+|+.|++.+ |.++..++...
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 356799999999999999999876 34565566543
No 492
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=87.75 E-value=0.28 Score=45.73 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.8
Q ss_pred CccEEEEcCCCCChHHHHHHHHHH
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
.-.++++|++|+|||+|++.+...
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 357899999999999999998753
No 493
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=87.73 E-value=0.3 Score=45.22 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.|+++|++|+|||+|.+.+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999853
No 494
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=87.73 E-value=0.093 Score=60.92 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=30.1
Q ss_pred CCCCCcccccCccEE-EEcCCCCChHHHHHH-HHHH
Q 008176 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKT-LARY 353 (575)
Q Consensus 320 ~l~~i~v~i~~~~VL-L~GPpGTGKTtLAra-LA~~ 353 (575)
.|+++++.++.+.++ ++|++|+|||||++. ++..
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~ 547 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDA 547 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHH
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHH
Confidence 689999999999888 999999999999996 5533
No 495
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=87.69 E-value=0.28 Score=46.09 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.++++|++|+|||+|++.+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999864
No 496
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=87.64 E-value=0.39 Score=44.48 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=21.0
Q ss_pred CccEEEEcCCCCChHHHHHHHHHH
Q 008176 330 KSNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
.-.++++|++|+|||+|++.+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999999863
No 497
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.64 E-value=0.28 Score=45.98 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCChHHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLARY 353 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~ 353 (575)
-.++++|++|+|||+|++.+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47889999999999999998754
No 498
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=87.51 E-value=0.31 Score=49.36 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=19.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHHHh
Q 008176 331 SNILLMGPTGSGKTLLAKTLARYV 354 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~~l 354 (575)
.-+.|.||+|+|||||.++|+ ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 345599999999999999999 54
No 499
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=87.39 E-value=0.19 Score=45.27 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=9.9
Q ss_pred ccEEEEcCCCCChHHHHHHHHH
Q 008176 331 SNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 331 ~~VLL~GPpGTGKTtLAraLA~ 352 (575)
-.++++|++|+|||+|++.+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999864
No 500
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.37 E-value=0.29 Score=45.58 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=20.5
Q ss_pred CccEEEEcCCCCChHHHHHHHHH
Q 008176 330 KSNILLMGPTGSGKTLLAKTLAR 352 (575)
Q Consensus 330 ~~~VLL~GPpGTGKTtLAraLA~ 352 (575)
...|+++|++|+|||+|++.+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 35789999999999999999975
Done!