Query 008177
Match_columns 575
No_of_seqs 190 out of 1980
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 19:59:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 2.9E-30 1E-34 279.0 31.9 439 1-536 12-474 (491)
2 2xut_A Proton/peptide symporte 100.0 3.1E-30 1.1E-34 281.3 22.9 478 2-537 12-506 (524)
3 4gc0_A D-xylose-proton symport 100.0 3.5E-28 1.2E-32 262.5 21.9 412 37-546 54-475 (491)
4 1pw4_A Glycerol-3-phosphate tr 100.0 6.4E-27 2.2E-31 249.3 29.0 397 3-534 29-434 (451)
5 3o7q_A L-fucose-proton symport 99.9 1.7E-24 5.7E-29 229.8 32.7 352 5-492 29-409 (438)
6 2gfp_A EMRD, multidrug resista 99.9 2.1E-23 7.2E-28 217.1 19.4 167 5-204 3-169 (375)
7 2cfq_A Lactose permease; trans 99.9 4.6E-23 1.6E-27 218.5 14.2 168 2-199 7-177 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 7.7E-13 2.6E-17 140.1 16.0 178 2-209 252-433 (451)
9 3o7q_A L-fucose-proton symport 99.3 2.3E-11 7.9E-16 128.3 17.9 167 2-203 258-426 (438)
10 2cfq_A Lactose permease; trans 99.3 1.6E-11 5.3E-16 129.7 13.1 172 5-208 223-398 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 3.3E-10 1.1E-14 121.6 12.3 184 5-212 286-474 (491)
12 4gc0_A D-xylose-proton symport 99.1 3.5E-09 1.2E-13 113.4 19.4 182 5-213 279-466 (491)
13 2gfp_A EMRD, multidrug resista 98.8 1.3E-09 4.4E-14 112.6 2.5 165 2-197 199-364 (375)
14 2xut_A Proton/peptide symporte 98.2 1.1E-05 3.7E-10 86.9 14.0 114 352-488 56-172 (524)
15 2g9p_A Antimicrobial peptide l 20.2 43 0.0015 18.7 1.2 14 57-71 2-15 (26)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.98 E-value=2.9e-30 Score=278.98 Aligned_cols=439 Identities=19% Similarity=0.278 Sum_probs=290.7
Q ss_pred CchhHHHHHHHHHHHHhhhhhhHHHHHHhhhc-----cCCChhhHHHHHHHHHHHHHHHhhhhHHHhhh-cccchHHHHH
Q 008177 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNE-----MHFPLSKSANIVTNFIGTVFLLSLFGGFLSDS-YLGSFWTMLI 74 (575)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~-~~Grr~~~~~ 74 (575)
+|.++.+....+++.+++|++.++++.|++++ +|++..+.+++.+.+.++..++++++|+++|| + |||++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~~~~ 90 (491)
T 4aps_A 12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPAVFW 90 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHHHH
Confidence 35678888999999999999999999999988 99999999999999999999999999999999 7 99999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccch
Q 008177 75 FGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQES 154 (575)
Q Consensus 75 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 154 (575)
+.++..++.++++++++ .+.++++|+++|++.|...+...++++|++|++++
T Consensus 91 ~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 142 (491)
T 4aps_A 91 GGVLIMLGHIVLALPFG----------------------------ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR 142 (491)
T ss_dssp HHHHHHHHHHHHHSCCS----------------------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT
T ss_pred HHHHHHHHHHHHHHhhh----------------------------HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc
Confidence 99999999999998755 45688999999999999999999999999996543
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecC---CCCC-chhhHHHHH
Q 008177 155 KKLSTYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKS---PRGS-IFTPIAQVF 230 (575)
Q Consensus 155 ~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~---~~~~-~~~~~~~~~ 230 (575)
.|++++++++.+.++|..++|.+++++.++.|||++|++.++..+++.+...+..++....+ ++++ ..++..+..
T Consensus 143 -~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
T 4aps_A 143 -RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLL 221 (491)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHH
T ss_pred -cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHH
Confidence 37888999999999999999999999999999999999988777766666554443322111 1111 111111100
Q ss_pred HH-------------HHhhhcccCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcc
Q 008177 231 VA-------------AITKRKQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKL 297 (575)
Q Consensus 231 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (575)
.. .....+. .+ .++....................|+.
T Consensus 222 ~~~g~~l~~~~~~~~~~~~~~~----------------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (491)
T 4aps_A 222 VKVSLAVAGFIAIIVVMNLVGW----------------------------NS--LPAYINLLTIVAIAIPVFYFAWMISS 271 (491)
T ss_dssp HHCCCCCHHHHHHHHHHHHHSS----------------------------CC--TTHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhccC----------------------------cc--cccchhhhhHHHHHHHHHHHHHHhhc
Confidence 00 0000000 00 00000000000000000000000000
Q ss_pred cchhhHHHHHHHhhHHHHHHHHHHHHHHHhhccceeeeeecc-ccccCCCccccChhhhccchhHHHHHHHHhhhHHHhh
Q 008177 298 CTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSA-MDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVP 376 (575)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 376 (575)
... ....+++......++.....++..+.+.......+... .+.. ....+.......+..++..++.+++.+|
T Consensus 272 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~r 345 (491)
T 4aps_A 272 VKV-TSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS-----WFPVSWFQSLNPLFIMLYTPFFAWLWTA 345 (491)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS-----SSCSGGGTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-cHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC-----ccCHHHHhccchHHHHHHHHHHHHHHHH
Confidence 000 01122333334445555555666665554432221111 1111 1335566677777777788888777654
Q ss_pred cccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008177 377 VASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQ 456 (575)
Q Consensus 377 ~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~ 456 (575)
+ +||+ ......+..++++.+++++++...... ...+...+.++..+.+++.+++.+...+..++++.|.
T Consensus 346 ~----~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 414 (491)
T 4aps_A 346 W----KKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGAL-----YGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKL 414 (491)
T ss_dssp T----TTC-----CHHHHHHHHHHHHHHHTTTHHHHHH-----CCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred H----hccC--CCchHHHHHHHHHHHHHHHHHHHHHHh-----cCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 4 4443 244566778888888887776654311 1112234566677788889999999899999999999
Q ss_pred cchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 008177 457 SLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRW 536 (575)
Q Consensus 457 ~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~~~ 536 (575)
+|++.||+++|+.++.+.+|..+++.+.+.+.+ .++...|+++++++++..++.+.+.++
T Consensus 415 ~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 415 APKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA--------------------KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp TTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG--------------------SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988766532 112245777777777776666665544
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=3.1e-30 Score=281.28 Aligned_cols=478 Identities=19% Similarity=0.350 Sum_probs=283.7
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccC------CChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMH------FPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIF 75 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~------~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~ 75 (575)
|.++.+....++..+++|++.++++.|+++++| +++.+++++.+.+.++..++++++|+++||++|||++++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~ 91 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWL 91 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 567888999999999999999999999999999 99999999999999999999999999999933999999999
Q ss_pred HHHHHHHHHHHHHhh-ccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccch
Q 008177 76 GFVELSGFILLSVQA-HLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQES 154 (575)
Q Consensus 76 ~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 154 (575)
.++..++.+++++++ + .+.+++.|+++|++.+...+...++++|++|++++
T Consensus 92 ~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r 143 (524)
T 2xut_A 92 SLIYCVGHAFLAIFEHS----------------------------VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK 143 (524)
T ss_dssp HHHHHHHHHHHHHTSSC----------------------------HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT
T ss_pred HHHHHHHHHHHHHhccc----------------------------HHHHHHHHHHHHHhccccchhHHHHHHHHcCccch
Confidence 999999999999875 4 67789999999999999999999999999997663
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHH
Q 008177 155 KKLSTYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAI 234 (575)
Q Consensus 155 ~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (575)
.++...+++++.+.++|..++|.+++++.+..||++.|++.++..+++.+...+..++.++.++++++..+..+.+....
T Consensus 144 ~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (524)
T 2xut_A 144 SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSAL 223 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHH
Confidence 33355666699999999999999999999889999999998887666665555444333222222221111111111111
Q ss_pred hhhcccCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhh---cccCCCCCCC-------cccchhhHH
Q 008177 235 TKRKQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIK---VQDGANESPW-------KLCTVTQVE 304 (575)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-------~~~~~~~~~ 304 (575)
++++... +......+.. ........ ..+.++.......... ..+.....+| +........
T Consensus 224 ~~~~~~~-~~~~~~~~~~--~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (524)
T 2xut_A 224 LTKVEGK-GNIGLVLALI--GGVSAAYA-------LVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVD 293 (524)
T ss_dssp ---CTTH-HHHHHHHHHH--HHHHHHHT-------GGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSST
T ss_pred hhhhccc-Cccchhhhhh--hhhhhhhh-------hcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHH
Confidence 1100000 0000000000 00000000 0000000000000000 0000000000 000000111
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhccceeeeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccC
Q 008177 305 QVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKK 384 (575)
Q Consensus 305 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r 384 (575)
+.++.......+.....++..+.+....+..+...++.. .+ .+.+.+...+.+..++..++.+++..+..+|.++|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (524)
T 2xut_A 294 GVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP---QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK 369 (524)
T ss_dssp TTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC---SS-SCHHHHHTTSGGGHHHHGGGTTTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC---ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC
Confidence 223333333334444444444444444333322222211 10 24566667777777778888776654443444333
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 008177 385 DSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSF 464 (575)
Q Consensus 385 ~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~ 464 (575)
....+.+.+|+++.+++++++..... ..+.+...+.+++++.+++.+++.+...+..++++.|.+|++.||+
T Consensus 370 ---~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~ 441 (524)
T 2xut_A 370 ---LTALRKMGAGIAITGLSWIVVGTIQL-----MMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGT 441 (524)
T ss_dssp ----CCHHHHHTHHHHHHHHHHTTTTTTT-----TTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTT
T ss_pred ---CChHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhH
Confidence 24556677888888777766554310 0000112355667778899999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 008177 465 LTAMTYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRWY 537 (575)
Q Consensus 465 ~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~ 537 (575)
++|+.++.+++|+.+++.+.+.+.+..+. +|.+++.++. ....|++.+++++++.++++++.+++
T Consensus 442 ~~g~~~~~~~~g~~~g~~~~g~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (524)
T 2xut_A 442 IMSFWTLSVTVGNLWVLLANVSVKSPTVT------EQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSY 506 (524)
T ss_dssp THHHHGGGHHHHHHHHHHHHHHTTSCHHH------HHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccc------cccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999887542211 1311000111 12236777777777776666555443
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=3.5e-28 Score=262.55 Aligned_cols=412 Identities=11% Similarity=0.005 Sum_probs=228.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCcccccc
Q 008177 37 LSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAK 116 (575)
Q Consensus 37 ~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (575)
+.+.+++.+++.+|..++++++|+++||+ |||++++++.+++.++.++++++....... .........-
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~----------~~~~~~~~~~ 122 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSI----------NPDNTVPVYL 122 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCS----------SSSSSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhh----------cchhHHHHHH
Confidence 45678999999999999999999999997 999999999999999999999743200000 0000000011
Q ss_pred chhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc--------ccc
Q 008177 117 GYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTH--------SGM 188 (575)
Q Consensus 117 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~--------~g~ 188 (575)
..++..++++|+++|+|.|+..+..+.+++|..|+++ |++..++.+.+..+|..+++.++..+... .+|
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~---rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI---RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGW 199 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh---hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhh
Confidence 3458889999999999999999999999999999555 99999999999999999998887766543 346
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcccCCCCcccccccccccchhhhhhcCCCCc
Q 008177 189 DIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICPSNTYILHGSQNNIATNRVLAISPNNR 268 (575)
Q Consensus 189 ~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (575)
|+.+.+..+..++.++..++ .||+++++..+++.+++.+.+.+.....
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~--------------------------------~peSp~~L~~~~~~~~a~~~l~~~~~~~ 247 (491)
T 4gc0_A 200 RYMFASECIPALLFLMLLYT--------------------------------VPESPRWLMSRGKQEQAEGILRKIMGNT 247 (491)
T ss_dssp HHHHHTTHHHHHHHHHHGGG--------------------------------SCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhhhhhhc--------------------------------CCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence 66666555544433332222 1223333322222222222222100000
Q ss_pred ccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhh-HHHHHHHHHH-HHHHHhhccceeeeeeccccccCCC
Q 008177 269 NLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMS-VVPIFACTII-FNTILAQLQTFSVQQGSAMDNKITN 346 (575)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (575)
... .+..+..+......+. . .+......++... ....+..... .+...... .... ...+
T Consensus 248 ~~~-~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~- 308 (491)
T 4gc0_A 248 LAT-QAVQEIKHSLDHGRKT-----G----GRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYA-PEVF-------KTLG- 308 (491)
T ss_dssp HHH-HHHHHHHHHHHHHHHH-----T----THHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHH-HHHH-------HHSS-
T ss_pred hhH-HHHHHHHHHHHhhhhh-----h----hHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcc-hHHH-------HhcC-
Confidence 000 0000000000000000 0 0000000011111 1100000000 00000000 0000 0000
Q ss_pred ccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcc
Q 008177 347 RFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQIL 426 (575)
Q Consensus 347 g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 426 (575)
..............+..++...+...+.| |++|| +.+..+...+.++++.++..... ...
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~d----r~Grr-------~~~~~~~~~~~~~~~~l~~~~~~---------~~~ 368 (491)
T 4gc0_A 309 ASTDIALLQTIIVGVINLTFTVLAIMTVD----KFGRK-------PLQIIGALGMAIGMFSLGTAFYT---------QAP 368 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCSH-------HHHHHHHHHHHHHHHHHHHHHHT---------TCC
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHH----hhcCc-------chhccchHHHHHHHHHHHHHHhc---------ccc
Confidence 00111222333444444555555555554 44433 33556666666666555443210 111
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCCCCCCCccCCC
Q 008177 427 SIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDND 506 (575)
Q Consensus 427 ~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~ 506 (575)
....+....++.........|..+.+..|.+|++.|++++|+.+..+++++.+++.+.+.+.+....
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~------------- 435 (491)
T 4gc0_A 369 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL------------- 435 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH-------------
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 1111222222222223334567788999999999999999999999999999999988876432110
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCC
Q 008177 507 LNKDRLDLFYWLLAALSLINFFNYLFWSRWYSYNPSLSPT 546 (575)
Q Consensus 507 l~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (575)
....+....|++++++++++.++.+++.||+|+++.||.+
T Consensus 436 ~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~ 475 (491)
T 4gc0_A 436 VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE 475 (491)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence 0112223568889999999999998999999887766543
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=6.4e-27 Score=249.25 Aligned_cols=397 Identities=9% Similarity=-0.064 Sum_probs=250.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
.++......+...+..+.+.+.++.+. +++ .++.+.+++.+.+.++..++++++|+++||+ |||++++++.++.+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~ 105 (451)
T 1pw4_A 29 IFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAV 105 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHH
Confidence 344555556666666666666666555 577 9999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHH----hhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhh
Q 008177 83 FILLSV----QAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLS 158 (575)
Q Consensus 83 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~ 158 (575)
.+++++ +++ ++.++++|+++|++.+...+...++++|++|+++ |+
T Consensus 106 ~~~~~~~~~~~~~----------------------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~---r~ 154 (451)
T 1pw4_A 106 MLFMGFVPWATSS----------------------------IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE---RG 154 (451)
T ss_dssp HHHHHHCHHHHSS----------------------------SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH---HH
T ss_pred HHHHHhhhhcccc----------------------------HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh---hh
Confidence 999998 655 4558899999999999999999999999999555 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhh
Q 008177 159 TYFNVAYFAFCMGQLIALTLLVWVQTHSG-MDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKR 237 (575)
Q Consensus 159 ~~~~~~~~~~~lg~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (575)
+++++.+.+.++|..++|.+++++.+..| ||+.|++.++..++..+...+..++.+......+. +
T Consensus 155 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------- 220 (451)
T 1pw4_A 155 GIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E------------- 220 (451)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h-------------
Confidence 99999999999999999999999888888 99999998877665555444433322111100000 0
Q ss_pred cccCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCccc-chhhHHHHHHHhhHHHHH
Q 008177 238 KQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLC-TVTQVEQVKIIMSVVPIF 316 (575)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 316 (575)
+.... .+.+.+++ ..++ ..++.. .+....+++........+
T Consensus 221 -----~~~~~-~~~~~~~~---------------~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (451)
T 1pw4_A 221 -----EYKND-YPDDYNEK---------------AEQE-----------------LTAKQIFMQYVLPNKLLWYIAIANV 262 (451)
T ss_dssp -----TTCCC----------------------------------------------CCTHHHHHHTSSCHHHHHHHHHHH
T ss_pred -----hhccc-ccccchhh---------------hhcc-----------------cccccchHHHHHcCHHHHHHHHHHH
Confidence 00000 00000000 0000 000000 000000111111111122
Q ss_pred HHHHHHHHHHhhccceeeeeeccccccCCCcccc-ChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHH
Q 008177 317 ACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQI-PPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVG 395 (575)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~ 395 (575)
+.....+......+.+.. ... |++. ..+.+.....+..+++.++.+++.+|+.+ ++| +.+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~-------~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~--~~~-------~~~~ 324 (451)
T 1pw4_A 263 FVYLLRYGILDWSPTYLK-------EVK--HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR--GNR-------GATG 324 (451)
T ss_dssp HHHHHHHHHHHHHHHHBT-------TBS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST--TCH-------HHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------Hhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCc-------hhHH
Confidence 222222222222222111 111 1111 12344555556666666666666544300 222 2234
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHh
Q 008177 396 VGLFVAT-FSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYS 474 (575)
Q Consensus 396 ~g~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ 474 (575)
++.++.. ++++++... ...+.+...+..++.|++.+...+..++++.|.+|++.||+++|+.++...
T Consensus 325 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 392 (451)
T 1pw4_A 325 VFFMTLVTIATIVYWMN------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY 392 (451)
T ss_dssp HHHHHHHHHHHHHTTSC------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHH
Confidence 4444333 444333221 112445555666777888777788888999999999999999999999999
Q ss_pred H-HHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 008177 475 F-GFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWS 534 (575)
Q Consensus 475 l-g~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~ 534 (575)
+ |..+++.+.+.+.+.. ++...|++.+++.+++.+..+...
T Consensus 393 ~~g~~~~~~~~g~l~~~~-------------------g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 393 LGGSVAASAIVGYTVDFF-------------------GWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHSS-------------------CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-------------------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999886422 223567777777777766655543
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=1.7e-24 Score=229.80 Aligned_cols=352 Identities=11% Similarity=0.035 Sum_probs=226.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFI 84 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~ 84 (575)
+.+....+...+..+...+.+| ++.+++|+++.+.+++.+.+.++..++.+++|+++||+ |||++++++.++.+++.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~ 106 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAA 106 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHHHHHHH
Confidence 3344444455555555545555 57789999999999999999999999999999999997 999999999999999999
Q ss_pred HH---HHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 85 LL---SVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 85 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
++ +++++ ++.++++|++.|++.|...+...++++|++|+++ |++++
T Consensus 107 ~~~~~~~~~~----------------------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~ 155 (438)
T 3o7q_A 107 LFWPAAEIMN----------------------------YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---GHFRL 155 (438)
T ss_dssp HHHHHHHTTC----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT---HHHHH
T ss_pred HHHhcccccc----------------------------HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh---HHHHH
Confidence 99 55443 7789999999999999999999999999999655 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hccc-------------------------chhHHHHHHHHHHHHHHHHHHhcceeee
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQ-THSG-------------------------MDIGFGVSAAAMAVGLISLIFGIFVYRN 215 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~-~~~g-------------------------~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 215 (575)
++.+.+.++|..++|.+++++. +..+ ||+.|++.+...++..+..++... ++
T Consensus 156 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~ 233 (438)
T 3o7q_A 156 NLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PA 233 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Cc
Confidence 9999999999999999999988 5544 999998766655444443333211 01
Q ss_pred cCCCCCchhhHHHHHHHHHhhhcccCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCC
Q 008177 216 KSPRGSIFTPIAQVFVAAITKRKQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPW 295 (575)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (575)
.+++.+. ++ + .+ ..+..+.+
T Consensus 234 ~~~~~~~--------------------~~-----~-~~-------------------~~~~~~~~--------------- 253 (438)
T 3o7q_A 234 LQSDNHS--------------------DA-----K-QG-------------------SFSASLSR--------------- 253 (438)
T ss_dssp CTTTCCC--------------------CS-----S-TT-------------------SHHHHHHH---------------
T ss_pred ccccccc--------------------cc-----c-cc-------------------chhhhHHH---------------
Confidence 0000000 00 0 00 00000000
Q ss_pred cccchhhHHHHHHHhhHHHHHHHHHHHHHHHhhccceeeeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHh
Q 008177 296 KLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFV 375 (575)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 375 (575)
...+++........++..........+.+.+...+....+ ......+.....+..+++.++.+++.|
T Consensus 254 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~~ 320 (438)
T 3o7q_A 254 ------LARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT-------AGFAANYLTGTMVCFFIGRFTGTWLIS 320 (438)
T ss_dssp ------HTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc-------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000111111111122222222222222222111110111 111334445555566666666666664
Q ss_pred hcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008177 376 PVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYK 455 (575)
Q Consensus 376 ~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~ 455 (575)
|+++ .+.+..+.++..++++++... +..+.....++.+++.+...|..+++..|
T Consensus 321 ----r~~~-------~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 374 (438)
T 3o7q_A 321 ----RFAP-------HKVLAAYALIAMALCLISAFA---------------GGHVGLIALTLCSAFMSIQYPTIFSLGIK 374 (438)
T ss_dssp ----HSCH-------HHHHHHHHHHHHHHHHHHHHC---------------CHHHHHHHHHHHHHHHTTHHHHHHHHHHS
T ss_pred ----Hhcc-------hHHHHHHHHHHHHHHHHHHHc---------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4322 234566666666665554433 11233444577788888888899999999
Q ss_pred hcchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcc
Q 008177 456 QSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNKITS 492 (575)
Q Consensus 456 ~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~ 492 (575)
.+|++ ++++.++.. .+.+|+.+++.+.+.+.+..+
T Consensus 375 ~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 375 NLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp SCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred hcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 99977 999999877 678999999999998876543
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.91 E-value=2.1e-23 Score=217.10 Aligned_cols=167 Identities=13% Similarity=0.059 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFI 84 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~ 84 (575)
+.+....++..+....+.+.++.+ .+++|.|+.+.+++.+.+.++..+++++.|+++||+ |||++++.+.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 445566667777777777777765 568999999999999999999999999999999997 999999999999999999
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHH
Q 008177 85 LLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVA 164 (575)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 164 (575)
+++++++ .+.+++.|++.|++.+...+...+++.|++|+++ |++++++.
T Consensus 81 ~~~~~~~----------------------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 129 (375)
T 2gfp_A 81 VAVTTSS----------------------------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ---LRHANSLL 129 (375)
T ss_dssp HHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS---CCSHHHHH
T ss_pred HHHHhcc----------------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH---HHHHHHHH
Confidence 9998765 7779999999999999999999999999999655 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Q 008177 165 YFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLI 204 (575)
Q Consensus 165 ~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i 204 (575)
+...++|..++|.+++++.++.|||+.|++.++..++..+
T Consensus 130 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 130 NMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988999999987766554433
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.89 E-value=4.6e-23 Score=218.55 Aligned_cols=168 Identities=15% Similarity=0.038 Sum_probs=120.5
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
|..+......++...++..+.++++.|+++++|+|+.+++++.+.+.++..++++++|+++||+ |||++++++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4566666777777777778889999999999999999999999999999999999999999997 999999998887655
Q ss_pred HHHHH---HHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhh
Q 008177 82 GFILL---SVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLS 158 (575)
Q Consensus 82 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~ 158 (575)
+...+ +++... ...+...+.+.+++.|...+...+...++.++. .++++
T Consensus 86 ~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~ 137 (417)
T 2cfq_A 86 MFAPFFIFIFGPLL---------------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV-SRRSN 137 (417)
T ss_dssp CHHHHHHHTHHHHH---------------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH-HHHHT
T ss_pred HHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-hhhcc
Confidence 32211 221110 001233455555555544444444444444322 23366
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Q 008177 159 TYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAM 199 (575)
Q Consensus 159 ~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~ 199 (575)
..++..+...++|..++|.+++++.+ .+|++.|++.++..
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 66777777788999999999999886 58999998766543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.45 E-value=7.7e-13 Score=140.12 Aligned_cols=178 Identities=16% Similarity=0.089 Sum_probs=150.2
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcc--cchHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYL--GSFWTMLIFGFVE 79 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~--Grr~~~~~~~~~~ 79 (575)
+.++......++..+..+++..+++.|+++.+|+++.+++++.+.+.++..++.++.|+++|| + |||+.+..+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 456777778888889999999999999998899999999999999999999999999999999 7 9999988887776
Q ss_pred H-HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhh
Q 008177 80 L-SGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLS 158 (575)
Q Consensus 80 ~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~ 158 (575)
. ++.+++.+..+ .+.+.+.+..++.|++.+...+...+++.|.+|+++ |+
T Consensus 331 ~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~g 381 (451)
T 1pw4_A 331 VTIATIVYWMNPA--------------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA---AG 381 (451)
T ss_dssp HHHHHHHTTSCCT--------------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH---HH
T ss_pred HHHHHHHHHHhcc--------------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh---hh
Confidence 6 56555554321 125557777788899888888888999999999555 99
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 008177 159 TYFNVAYFAFCM-GQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFG 209 (575)
Q Consensus 159 ~~~~~~~~~~~l-g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~ 209 (575)
++.++++...++ |..++|.+.+++.+..||+..|++.++..+++.+..+..
T Consensus 382 ~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 382 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999998887776666655543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.33 E-value=2.3e-11 Score=128.30 Aligned_cols=167 Identities=16% Similarity=0.139 Sum_probs=137.8
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHH-hhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITY-VFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVEL 80 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~ 80 (575)
+.++......++.....+++..+++.| +++.+|+++.+++++.+.+.++..++.+++|+++||+ |||+.+..+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 456777777788888888999999999 8888899999999999999999999999999999996 99999999999988
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhH
Q 008177 81 SGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTY 160 (575)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~ 160 (575)
++.+++.+.++ .. ..+..++.|++.+...+...++..|.+|++ ++.+
T Consensus 337 ~~~~~~~~~~~----------------------------~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~ 383 (438)
T 3o7q_A 337 ALCLISAFAGG----------------------------HV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD----TKYG 383 (438)
T ss_dssp HHHHHHHHCCH----------------------------HH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG----HHHH
T ss_pred HHHHHHHHcCC----------------------------cH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc----ccch
Confidence 88888777533 22 233447788889999999999999998843 5556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHH
Q 008177 161 FNVAYFAFCMGQLIALTLLVWVQTHSG-MDIGFGVSAAAMAVGL 203 (575)
Q Consensus 161 ~~~~~~~~~lg~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~ 203 (575)
.++.. ...+|..++|.+.|++.+..| ++..|++.++..++..
T Consensus 384 ~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 384 SSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 66555 566999999999999999988 9999987665544433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.28 E-value=1.6e-11 Score=129.66 Aligned_cols=172 Identities=12% Similarity=-0.004 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCC---ChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHF---PLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~---s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
+......++....++.....+|.|+.+.++. +..+.+++.+...++..++.++.|+++||+ |||+++..+.++.++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~ 301 (417)
T 2cfq_A 223 WFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSV 301 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHH
Confidence 3333333444445555556788888766653 244557777777778888999999999996 999999988888887
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+..+.++.++ ...+.+..++.+++.+...+....+.+|.+|+ +.|+++.
T Consensus 302 ~~~~~~~~~~----------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~---~~~g~~~ 350 (417)
T 2cfq_A 302 RIIGSSFATS----------------------------ALEVVILKTLHMFEVPFLLVGCFKYITSQFEV---RFSATIY 350 (417)
T ss_dssp HHHHHTTCCS----------------------------HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH---HHHHHHH
T ss_pred HHHHHHHhcc----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH---HHHHHHH
Confidence 7766655422 44455666667777666666778899999994 4499998
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 162 NV-AYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 162 ~~-~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
++ ++....+|..++|.++|++.++.|++..|.+.++..+++.+..+.
T Consensus 351 g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 88 577788999999999999998888988888877776666655443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.09 E-value=3.3e-10 Score=121.57 Aligned_cols=184 Identities=14% Similarity=0.026 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHH-----HHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTML-----IFGFVE 79 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~-----~~~~~~ 79 (575)
+.+....++....++.....++.|+++.++.+..+.+++.+...++..++.++.|+++||+ |||+... .+.++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~~ 364 (491)
T 4aps_A 286 IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMFA 364 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHHH
Confidence 4444455566677777888899999988998888889999999999999999999999996 9987655 677777
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhh
Q 008177 80 LSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLST 159 (575)
Q Consensus 80 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~ 159 (575)
+++..++++...... .....+...+.+..++.|++.+...+...+++.|.+|++. |++
T Consensus 365 ~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~---~g~ 422 (491)
T 4aps_A 365 GLSFLLMAIPGALYG-------------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF---NSQ 422 (491)
T ss_dssp HHHHTTTHHHHHHCC-------------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC---SSS
T ss_pred HHHHHHHHHHHHhcC-------------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH---HHH
Confidence 777766665431000 0001124556677788999999999999999999999655 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcce
Q 008177 160 YFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFV 212 (575)
Q Consensus 160 ~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~ 212 (575)
+.++++...++|..+++.+.+++.+ .++...|.+.+...+++.+..++..++
T Consensus 423 ~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 423 MMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp STHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888765 467777777766666665555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.08 E-value=3.5e-09 Score=113.41 Aligned_cols=182 Identities=10% Similarity=-0.011 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFI 84 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~ 84 (575)
.......++..+..+.......+++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~ 357 (491)
T 4gc0_A 279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMF 357 (491)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHH
Confidence 3344444444444444445555566678888888888888888889999999999999996 999999999998888887
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHH
Q 008177 85 LLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVA 164 (575)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 164 (575)
.++....... ........+..+..+++ .+..+....+.+|.+|.+. |+++.++.
T Consensus 358 ~l~~~~~~~~----------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~---R~~~~g~~ 411 (491)
T 4gc0_A 358 SLGTAFYTQA----------------------PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI---RGKALAIA 411 (491)
T ss_dssp HHHHHHHTTC----------------------CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT---HHHHHHHH
T ss_pred HHHHHHhccc----------------------chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH---HHHHHHHH
Confidence 7765432111 11112222222222332 2344677789999999554 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh------cccchhHHHHHHHHHHHHHHHHHHhccee
Q 008177 165 YFAFCMGQLIALTLLVWVQT------HSGMDIGFGVSAAAMAVGLISLIFGIFVY 213 (575)
Q Consensus 165 ~~~~~lg~~~~~~~~~~l~~------~~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 213 (575)
.....+|..+++.+.+.+.+ ..++.+.|++.++..+++.+..++..|+.
T Consensus 412 ~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 412 VAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 99999999998887666543 34566678777777777776666666544
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.79 E-value=1.3e-09 Score=112.61 Aligned_cols=165 Identities=14% Similarity=0.065 Sum_probs=127.3
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHH-HH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFV-EL 80 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~-~~ 80 (575)
|.++......++.....+++..++|.|+++++|.++.+.+++.+...++..++.++.|+++||+ |++ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 3456667777788888888999999999988999999999999999999999999999999996 872 2333322 22
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhH
Q 008177 81 SGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTY 160 (575)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~ 160 (575)
++..+...... ...+.+.+.+..++.|++.+...+...++..|.+| ++ |+++
T Consensus 276 ~~~~~~~~~~~------------------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~---~g~~ 327 (375)
T 2gfp_A 276 AGLLMWIPDWF------------------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL---AGTA 327 (375)
T ss_dssp TSSSSSHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH---HHHH
T ss_pred HHHHHHHHhhh------------------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc---cchH
Confidence 22221111110 01134556677788899999999999999999987 44 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 008177 161 FNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAA 197 (575)
Q Consensus 161 ~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~ 197 (575)
.++.+...++|..++|.+.+.+.+..+|+..+.+.++
T Consensus 328 ~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 328 GALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999999999999999999999887788877776543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.20 E-value=1.1e-05 Score=86.92 Aligned_cols=114 Identities=14% Similarity=0.033 Sum_probs=82.2
Q ss_pred hhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHH
Q 008177 352 PASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWI 431 (575)
Q Consensus 352 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 431 (575)
.+++.....+...++.++.+++.||+. ++| +.+.++.++.+++.++.... ..+.+.+
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~---g~r-------~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 112 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGWIADRFF---GKY-------NTILWLSLIYCVGHAFLAIF-------------EHSVQGF 112 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTSS---CSH-------HHHHHHHHHHHHHHHHHHHT-------------SSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---cch-------HHHHHHHHHHHHHHHHHHHh-------------cccHHHH
Confidence 344555566666667777776664440 333 34667777777776665543 1145566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH---HHHHHhHHHHHHHHHHHHHH
Q 008177 432 APQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAM---TYCSYSFGFYLSSLLVSLVN 488 (575)
Q Consensus 432 ~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~---~~~~~~lg~~lg~~l~~~i~ 488 (575)
.+..++.|++.+...+...+++.|.+|++.|+++.+. .+....+|..+++.+.+.+.
T Consensus 113 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 172 (524)
T 2xut_A 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL 172 (524)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH
T ss_pred HHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7778889999999999999999999999999877666 88888899999998877664
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=20.23 E-value=43 Score=18.73 Aligned_cols=14 Identities=21% Similarity=0.166 Sum_probs=10.7
Q ss_pred hhHHHhhhcccchHH
Q 008177 57 FGGFLSDSYLGSFWT 71 (575)
Q Consensus 57 ~~G~laD~~~Grr~~ 71 (575)
+.|.+..+| |||.+
T Consensus 2 lfgklikkf-grkai 15 (26)
T 2g9p_A 2 LFGKLIKKF-GRKAI 15 (26)
T ss_dssp HHHHHHHHH-TSHHH
T ss_pred cHHHHHHHH-hHHHH
Confidence 468889997 99854
Done!