Query 008178
Match_columns 575
No_of_seqs 325 out of 1223
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 20:28:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1338 Uncharacterized conser 100.0 5.8E-35 1.3E-39 293.6 18.2 256 7-334 7-273 (466)
2 KOG1337 N-methyltransferase [G 100.0 3.9E-31 8.5E-36 288.8 22.7 288 6-364 3-321 (472)
3 PF00856 SET: SET domain; Int 99.6 9.2E-15 2E-19 134.9 9.1 49 262-318 112-162 (162)
4 PF09273 Rubis-subs-bind: Rubi 99.5 1.3E-14 2.7E-19 130.7 2.2 127 350-556 2-128 (128)
5 smart00317 SET SET (Su(var)3-9 98.0 6.8E-06 1.5E-10 71.6 4.4 49 263-317 68-116 (116)
6 KOG2589 Histone tail methylase 93.8 0.065 1.4E-06 55.4 4.1 56 263-338 192-247 (453)
7 KOG1085 Predicted methyltransf 92.5 0.1 2.2E-06 52.2 3.2 51 270-327 335-386 (392)
8 KOG4442 Clathrin coat binding 86.4 0.69 1.5E-05 51.9 3.9 41 269-318 194-237 (729)
9 KOG1079 Transcriptional repres 84.6 0.88 1.9E-05 50.8 3.6 42 268-318 665-709 (739)
10 smart00317 SET SET (Su(var)3-9 78.9 2.6 5.6E-05 36.0 3.9 33 28-61 4-37 (116)
11 KOG1080 Histone H3 (Lys4) meth 75.7 2.4 5.2E-05 50.5 3.5 44 268-318 939-983 (1005)
12 COG2940 Proteins containing SE 75.0 1.8 3.9E-05 48.0 2.2 43 270-319 407-450 (480)
13 KOG1082 Histone H3 (Lys9) meth 66.9 4.8 0.0001 42.9 3.2 50 270-322 274-324 (364)
14 KOG1083 Putative transcription 65.6 5.9 0.00013 46.7 3.7 46 268-320 1250-1296(1306)
15 KOG1338 Uncharacterized conser 28.1 6.7 0.00015 41.5 -3.3 71 262-343 269-343 (466)
16 KOG2461 Transcription factor B 27.1 49 0.0011 35.7 2.8 32 299-330 124-155 (396)
17 KOG1141 Predicted histone meth 21.5 59 0.0013 37.8 2.1 56 270-330 1191-1253(1262)
18 KOG2084 Predicted histone tail 21.2 1.2E+02 0.0025 33.0 4.5 59 263-331 200-265 (482)
No 1
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.8e-35 Score=293.59 Aligned_cols=256 Identities=20% Similarity=0.254 Sum_probs=203.5
Q ss_pred hCHHHHHHHHHHCC-ccccC-eeEEeec---CCceeEEEEcCCC-CCCeEEEeCcccccChhhhccCCCCChhhhhhhcC
Q 008178 7 AKLEPFLQWLQVNK-VELRG-CKIKYSD---ESKGFGIFSSNEF-SDGVLLVVPLDLAITPMRVLQDPLIGPECRAMFED 80 (575)
Q Consensus 7 ~~~~~fl~Wl~~~G-~~~~~-v~i~~~~---~~~GrGl~A~~dI-~ge~l~~IP~~~~ls~~~~~~~~~~g~~~~~~l~~ 80 (575)
+....|+.|++..+ .+.++ |.+...+ ...|+|++|+++| +|+.||++|++++|+..++..-..+....+.+++
T Consensus 7 d~~~~fl~w~k~t~eletSpKi~~ndl~~v~~~~G~g~vAtesIkkgE~Lf~~prdsvLsvtts~li~~lps~~rv~Ln- 85 (466)
T KOG1338|consen 7 DLAKRFLLWGKLTLELETSPKIDNNDLPWVERIAGAGIVATESIKKGESLFAYPRDSVLSVTTSALITPLPSDIRVLLN- 85 (466)
T ss_pred cHHHHHHHHHHHhhheeecccccccccchhhhhcccceeeehhhcCCceEEEecCccEEeeehHHhcccchHHHHHHhh-
Confidence 44789999999987 77776 7666542 2358999999999 9999999999999998886532213333444453
Q ss_pred CCCChHHHHHHHHHHHhhcCC-CCcHHHHhhcCC--CCCCCCCCCHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008178 81 GEVDDRFLMILFLTVERLRKN-SSWKPYLDMLPT--TFGNPLWFTDDELLEL-KGTTLYRATELQKQNLLTLYDDKVKDL 156 (575)
Q Consensus 81 ~~l~~~~~LaL~Ll~E~~~~~-S~w~pYl~~LP~--~~~~pl~ws~~el~~L-~gt~l~~~~~~~~~~~~~~y~~~~~~l 156 (575)
.++.|..|++.|++|..-+. |+|+|||+.+|+ ..++|+||+++|++.| +||.+.+ +.++.+++.++|...+.++
T Consensus 86 -e~gsw~~Lllvll~E~~~pq~SrWrPYfs~wp~p~rm~spifWdEnEl~~Ll~stvlee-~~Kd~aeI~~~~i~~i~pf 163 (466)
T KOG1338|consen 86 -EVGSWGMLLLVLLREKKMPQKSRWRPYFSRWPQPARMHSPIFWDENELSMLLCSTVLEE-TVKDKAEIEKDFIFVIQPF 163 (466)
T ss_pred -cCCcHHHHHHHHHHHhhcccccccccHHHhCCChhhcCCCccCCchHHHHHhhcccchh-hHhHHHHHHHHHHHHHHHH
Confidence 68899999999999987654 999999999998 5789999999999866 5555544 8889999999999999999
Q ss_pred HHHhhccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccccccccccccccccCcCcccccccccccchh
Q 008178 157 VKKLLVLDGDSESEVSFEDFLWANSIFWTRALNIPLPHSYVFPQNQEDLNKYDSINNSAELSNDHNSRGELINGLNDIKN 236 (575)
Q Consensus 157 ~~~~~~~~~~~~~~~t~~~f~WA~s~V~SRaf~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 236 (575)
.+.+|.++ ..+++++|+.|++++++++|.++...+ .++ .+ ++.
T Consensus 164 ~~~~p~vf----s~~slEdF~y~~Al~laysfdve~~~s---------~~~--~e-ee~--------------------- 206 (466)
T KOG1338|consen 164 KQHCPIVF----SRPSLEDFMYAYALGLAYSFDVEFLLS---------LDN--LE-EES--------------------- 206 (466)
T ss_pred HHhCcchh----cccCHHHHHHHHHHHHHHheeeehhcc---------hhh--hh-hhh---------------------
Confidence 99988765 458999999999999999999986532 000 00 000
Q ss_pred hhhhhccccCCCccccccCCCCccccceecchhcccCCCCC-CCceEEEcCCCcccccCcceeEEEeecccCCCCCeEEe
Q 008178 237 EAQRVNSQVNGATSTLTSTQGETLWIEGLVPGIDFCNHDLK-AAATWEVDGTGLITGVPFSMYLLSVERSSFHSEKEISI 315 (575)
Q Consensus 237 ~~~~~~~~~~g~~~~~~~~~~e~~~~~~LVPl~DmlNH~~~-~~~~~~~d~~g~~~~~~~s~~l~~~a~~~i~~GeEI~i 315 (575)
+......+|+|.+||+||+.. +|+...|+.+ |+.|+|.|+|.+|+||++
T Consensus 207 --------------------e~e~ngk~m~p~ad~lNhd~~k~nanl~y~~N----------cL~mva~r~iekgdev~n 256 (466)
T KOG1338|consen 207 --------------------EIECNGKLMTPIADFLNHDGLKANANLRYEDN----------CLEMVADRNIEKGDEVDN 256 (466)
T ss_pred --------------------ccccCcccccchhhhhccchhhcccceeccCc----------ceeeeecCCCCCcccccc
Confidence 000123699999999999986 7888887654 799999999999999999
Q ss_pred ccCCCChHHHHHhCCcccC
Q 008178 316 SYGNKGNEELLYLYGFVID 334 (575)
Q Consensus 316 sYG~~~N~eLL~~YGFv~~ 334 (575)
+||-++|+ |++||.+.=
T Consensus 257 ~dg~~p~~--l~~l~ka~c 273 (466)
T KOG1338|consen 257 SDGLKPMG--LLKLTKALC 273 (466)
T ss_pred ccccCcch--hhhhhhhcc
Confidence 99999999 778887763
No 2
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=99.97 E-value=3.9e-31 Score=288.81 Aligned_cols=288 Identities=26% Similarity=0.381 Sum_probs=195.9
Q ss_pred hhCHHHHHHHHHHCCccccC-eeEEeecCCceeEEEEcCC-C-CCCeEEEeCcccccChhhhccCCCCChh---------
Q 008178 6 EAKLEPFLQWLQVNKVELRG-CKIKYSDESKGFGIFSSNE-F-SDGVLLVVPLDLAITPMRVLQDPLIGPE--------- 73 (575)
Q Consensus 6 ~~~~~~fl~Wl~~~G~~~~~-v~i~~~~~~~GrGl~A~~d-I-~ge~l~~IP~~~~ls~~~~~~~~~~g~~--------- 73 (575)
.+++.+|++|.+.+|+..+. +...... ..|.++++..+ + ..+.+..+..........+...+..+..
T Consensus 3 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (472)
T KOG1337|consen 3 VDVLSALLRWAQCNGISLSSSLDLRPDE-LKGLVRWAASESIASSENIKSLKFWLTGNGLSSSKSSLPGNDIDEWPLLVS 81 (472)
T ss_pred hhHHHHhhhHHhccCccCCcccccCccc-cCcceeeeecccCCCccccccceeccccCCcchhhhccccccccccchhhh
Confidence 46788999999999999876 4444333 36777777633 3 3333333322222222111111111100
Q ss_pred hhhh--------------hcC--CCCChH-HHHHHHHHHHhhcC-CCCcHHHHhhcCCCCCCCCCCCHHHHhcCCCCCHH
Q 008178 74 CRAM--------------FED--GEVDDR-FLMILFLTVERLRK-NSSWKPYLDMLPTTFGNPLWFTDDELLELKGTTLY 135 (575)
Q Consensus 74 ~~~~--------------l~~--~~l~~~-~~LaL~Ll~E~~~~-~S~w~pYl~~LP~~~~~pl~ws~~el~~L~gt~l~ 135 (575)
++.. ... -..+.. ..+++++++++... .|.|+||+..||+++++|++|..+++..|.+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~s~w~~~i~~l~~~~~~p~~~~~~~v~~l~~~~~~ 161 (472)
T KOG1337|consen 82 IRLIKGEKLLLVPPLLLLIAKRKPYNDLLPIALALFLLLEWAHGEISKWKPYISTLPSQYNSPLLWSEDEVKSLLSTPLF 161 (472)
T ss_pred hhhhhhhhhccCCchhhhccccccCccccHHHHHHHHHHhhhccccccchhhhhhchhhcCCccccCHHHHHHhhcchhh
Confidence 0000 000 011223 78899999999874 49999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccccccccccc
Q 008178 136 RATELQKQNLLTLYDDKVKDLVKKLLVLD-GDSESEVSFEDFLWANSIFWTRALNIPLPHSYVFPQNQEDLNKYDSINNS 214 (575)
Q Consensus 136 ~~~~~~~~~~~~~y~~~~~~l~~~~~~~~-~~~~~~~t~~~f~WA~s~V~SRaf~~~~~~~~~~P~~~~~~~~~~~~~~~ 214 (575)
..+..++..++..|..+. .+....+..+ ......++++.|.|++++|.||+|+.+.... +..
T Consensus 162 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~sr~~~~~~~~~------------~~~---- 224 (472)
T KOG1337|consen 162 EIVASRRQNLVNKSAELL-EVLQSHPSLFGSDLFDTFTFSAFKWAYSIVNSRAFYLPSLQR------------LTA---- 224 (472)
T ss_pred HHHHHHHHHhhhhHHHHH-HHHHhccccccccccCccchHHHHHHHHHHhhhhhccccccc------------ccc----
Confidence 988877777777554443 3333444332 1223348999999999999999999875321 000
Q ss_pred cccccCcCcccccccccccchhhhhhhccccCCCccccccCCCCccccceecchhcccCCCCCCCceEEEcCCCcccccC
Q 008178 215 AELSNDHNSRGELINGLNDIKNEAQRVNSQVNGATSTLTSTQGETLWIEGLVPGIDFCNHDLKAAATWEVDGTGLITGVP 294 (575)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~~~~~~LVPl~DmlNH~~~~~~~~~~d~~g~~~~~~ 294 (575)
+......+|+|++||+||+++. +.+.+.....
T Consensus 225 ------------------------------------------~~~~~~~~L~P~~D~~NH~~~~-~~~~~~~~d~----- 256 (472)
T KOG1337|consen 225 ------------------------------------------GDPDDNEALAPLIDLLNHSPEV-IKAGYNQEDE----- 256 (472)
T ss_pred ------------------------------------------CCCCcchhhhhhHHhhccCchh-ccccccCCCC-----
Confidence 0000247999999999999988 4444443221
Q ss_pred cceeEEEeecccCCCCCeEEeccCCCChHHHHHhCCcccCCCCCceEEEeccccccCCCCChhHHHHHHH
Q 008178 295 FSMYLLSVERSSFHSEKEISISYGNKGNEELLYLYGFVIDNNPDDYLMIHYPAEAIHSIPLSDSKALLLE 364 (575)
Q Consensus 295 ~s~~l~~~a~~~i~~GeEI~isYG~~~N~eLL~~YGFv~~~Np~D~v~i~l~~~~~~~~~~~~~k~~ll~ 364 (575)
.+.+++.++|++||||||+||+++|++||.+||||.++||+|.|.+.+ .+...++.+..|...+.
T Consensus 257 ---~~~l~~~~~v~~geevfi~YG~~~N~eLL~~YGFv~~~N~~d~v~l~~--~l~~~~~~~~~~~~~~~ 321 (472)
T KOG1337|consen 257 ---AVELVAERDVSAGEEVFINYGPKSNAELLLHYGFVEEDNPYDSVTLKL--ALPPEDVSYLDKSDVLK 321 (472)
T ss_pred ---cEEEEEeeeecCCCeEEEecCCCchHHHHHhcCCCCCCCCcceEEEee--cccccccchhHHHHHHh
Confidence 367788999999999999999999999999999999999999998764 56667776666654443
No 3
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.56 E-value=9.2e-15 Score=134.90 Aligned_cols=49 Identities=31% Similarity=0.365 Sum_probs=40.9
Q ss_pred cceecchhcccCCCCCCCceEEEc--CCCcccccCcceeEEEeecccCCCCCeEEeccC
Q 008178 262 IEGLVPGIDFCNHDLKAAATWEVD--GTGLITGVPFSMYLLSVERSSFHSEKEISISYG 318 (575)
Q Consensus 262 ~~~LVPl~DmlNH~~~~~~~~~~d--~~g~~~~~~~s~~l~~~a~~~i~~GeEI~isYG 318 (575)
..+|+|++||+||+..+||.+.++ ..+. .+.++|.++|++||||||+||
T Consensus 112 ~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~--------~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 112 GIALYPFADMLNHSCDPNCEVSFDFDGDGG--------CLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEETGGGGSEEESSTSEEEEEEEETTTT--------EEEEEESS-B-TTSBEEEEST
T ss_pred ccccCcHhHheccccccccceeeEeecccc--------eEEEEECCccCCCCEEEEEEC
Confidence 479999999999999999998776 2222 588999999999999999999
No 4
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=99.47 E-value=1.3e-14 Score=130.71 Aligned_cols=127 Identities=30% Similarity=0.404 Sum_probs=86.9
Q ss_pred cCCCCChhHHHHHHHHHhhhhhhcCcchhhhcccccCCCCCCCCCCccchhhhhcccccCccccccccccCCCCChhHHH
Q 008178 350 IHSIPLSDSKALLLEEQKAQLRCLLPKSLLEHGFFAAGHPKDGNNDNKLEVDRISSFSWSGQRRMPSYLNKLVFPENFLT 429 (575)
Q Consensus 350 ~~~~~~~~~k~~ll~~~~~~~~~~~p~~l~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~ll~ 429 (575)
.++||++..|.++|+.+|.... +.|. +. .++. +|++|++
T Consensus 2 ~~~D~l~~~K~~lL~~~gl~~~----------~~f~--------------------l~----------~~~~-~~~~Ll~ 40 (128)
T PF09273_consen 2 SPSDPLFEEKKQLLEEHGLSGD----------QTFD--------------------LR----------ADGP-LPPELLA 40 (128)
T ss_dssp -TTSTTHHHHHHHHHHTTS-SE----------EEEE--------------------EE----------CCSS-SHHHHHH
T ss_pred CchhhhHHHHHHHHHHCCCCCC----------ceee--------------------ee----------CCCC-CCHHHHH
Confidence 3579999999999998875321 1111 01 1111 7999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhccCCChhhhHHHHHH
Q 008178 430 ALRTIAMQEDEISKVSSLLEELVGSGGERQPSDAEVRAAVWETCGDSGALQLLVDLLQAKLTELEESSGTEDYDSELLLK 509 (575)
Q Consensus 430 ~lR~l~~~~~el~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~L~~y~tt~e~D~~lL~~ 509 (575)
++||++|+++|+..+........ ......|...+. +..++++|..++..++. +|+||+|+|+++|++
T Consensus 41 ~lRv~~~~~~e~~~~~~~~~~~~-~~~~~~~ls~~n---------E~~~l~~L~~~~~~~L~---~y~TtleeD~~~L~~ 107 (128)
T PF09273_consen 41 ALRVLLMTEEELRALKSLADSSE-WSDRSEPLSPEN---------EIAALQFLIDLCEARLS---AYPTTLEEDEELLQS 107 (128)
T ss_dssp HHHHHHSCHHHHHHHHHCGTTTH-CCHCCC-SBHHH---------HHHHHHHHHHHHHHHHT---TSSS-HHHHHHHCHT
T ss_pred HHHHHHcChHHHHHHHHhhcccc-cccccCCCchhh---------HHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHhc
Confidence 99999999999988764221100 000112323223 33568889998888776 999999999999986
Q ss_pred hccccccccccccCCCCcccccccccccccccceeeEEEEccHHHHH
Q 008178 510 SCITESQGQHASCENNSSEETNGWTQHKMSRKTWSSIVYRRGQKELA 556 (575)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~r~Ai~~R~geK~IL 556 (575)
. ....++|+|++||+|||+||
T Consensus 108 ~--------------------------~~~~~~~~A~~~R~~EK~IL 128 (128)
T PF09273_consen 108 N--------------------------DLSSRRRMALQVRLGEKRIL 128 (128)
T ss_dssp C--------------------------CCHHHHHHHHHHHHHHHHHH
T ss_pred C--------------------------CCcHHHHHHHHHHHHhHhcC
Confidence 3 34556999999999999998
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=97.98 E-value=6.8e-06 Score=71.62 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=39.2
Q ss_pred ceecchhcccCCCCCCCceEEEcCCCcccccCcceeEEEeecccCCCCCeEEecc
Q 008178 263 EGLVPGIDFCNHDLKAAATWEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISY 317 (575)
Q Consensus 263 ~~LVPl~DmlNH~~~~~~~~~~d~~g~~~~~~~s~~l~~~a~~~i~~GeEI~isY 317 (575)
..+.|+++|+||+..+|+.+.....+.. ..+.++|.|+|++||||+++|
T Consensus 68 ~~~~~~~~~iNHsc~pN~~~~~~~~~~~------~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 68 RRKGNIARFINHSCEPNCELLFVEVNGD------SRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CccCcHHHeeCCCCCCCEEEEEEEECCC------cEEEEEECCCcCCCCEEeecC
Confidence 3589999999999999998865432211 146788999999999999999
No 6
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=93.80 E-value=0.065 Score=55.37 Aligned_cols=56 Identities=29% Similarity=0.364 Sum_probs=41.4
Q ss_pred ceecchhcccCCCCCCCceEEEcCCCcccccCcceeEEEeecccCCCCCeEEeccCCCChHHHHHhCCcccCCCCC
Q 008178 263 EGLVPGIDFCNHDLKAAATWEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISYGNKGNEELLYLYGFVIDNNPD 338 (575)
Q Consensus 263 ~~LVPl~DmlNH~~~~~~~~~~d~~g~~~~~~~s~~l~~~a~~~i~~GeEI~isYG~~~N~eLL~~YGFv~~~Np~ 338 (575)
.-|=|. -++||+..+||.+-. .|.. ...++..|+|++||||+--||. ||.-++|.+
T Consensus 192 LwLGPa-afINHDCrpnCkFvs--~g~~-------tacvkvlRDIePGeEITcFYgs----------~fFG~~N~~ 247 (453)
T KOG2589|consen 192 LWLGPA-AFINHDCRPNCKFVS--TGRD-------TACVKVLRDIEPGEEITCFYGS----------GFFGENNEE 247 (453)
T ss_pred heeccH-HhhcCCCCCCceeec--CCCc-------eeeeehhhcCCCCceeEEeecc----------cccCCCCce
Confidence 345564 489999999997532 3321 2455669999999999999998 787777754
No 7
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=92.53 E-value=0.1 Score=52.23 Aligned_cols=51 Identities=24% Similarity=0.429 Sum_probs=38.6
Q ss_pred cccCCCCCCCceEEE-cCCCcccccCcceeEEEeecccCCCCCeEEeccCCCChHHHHH
Q 008178 270 DFCNHDLKAAATWEV-DGTGLITGVPFSMYLLSVERSSFHSEKEISISYGNKGNEELLY 327 (575)
Q Consensus 270 DmlNH~~~~~~~~~~-d~~g~~~~~~~s~~l~~~a~~~i~~GeEI~isYG~~~N~eLL~ 327 (575)
-++||+.-.|+.-.+ +-+|. | .|+++|.++|.+|||++-.||+++-+-++.
T Consensus 335 RLINHS~~gNl~TKvv~Idg~----p---HLiLvA~rdIa~GEELlYDYGDRSkesi~~ 386 (392)
T KOG1085|consen 335 RLINHSVRGNLKTKVVEIDGS----P---HLILVARRDIAQGEELLYDYGDRSKESIAK 386 (392)
T ss_pred hhhcccccCcceeeEEEecCC----c---eEEEEeccccccchhhhhhccccchhHHhh
Confidence 478999877764322 22332 3 589999999999999999999998877654
No 8
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.41 E-value=0.69 Score=51.89 Aligned_cols=41 Identities=24% Similarity=0.425 Sum_probs=29.5
Q ss_pred hcccCCCCCCCce---EEEcCCCcccccCcceeEEEeecccCCCCCeEEeccC
Q 008178 269 IDFCNHDLKAAAT---WEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISYG 318 (575)
Q Consensus 269 ~DmlNH~~~~~~~---~~~d~~g~~~~~~~s~~l~~~a~~~i~~GeEI~isYG 318 (575)
+=|+||+..|||. |.+.+. .. +=+-+.+.|++||||+..|+
T Consensus 194 aRFiNHSC~PNa~~~KWtV~~~-lR--------vGiFakk~I~~GEEITFDYq 237 (729)
T KOG4442|consen 194 ARFINHSCDPNAEVQKWTVPDE-LR--------VGIFAKKVIKPGEEITFDYQ 237 (729)
T ss_pred HHhhcCCCCCCceeeeeeeCCe-eE--------EEEeEecccCCCceeeEecc
Confidence 3489999999984 665431 11 11235899999999999987
No 9
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=84.57 E-value=0.88 Score=50.81 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=31.5
Q ss_pred hhcccCCCCCCCceEEE---cCCCcccccCcceeEEEeecccCCCCCeEEeccC
Q 008178 268 GIDFCNHDLKAAATWEV---DGTGLITGVPFSMYLLSVERSSFHSEKEISISYG 318 (575)
Q Consensus 268 l~DmlNH~~~~~~~~~~---d~~g~~~~~~~s~~l~~~a~~~i~~GeEI~isYG 318 (575)
.+=++||+.+|||...+ ..++- +-+.|.|.|.+|||+|..|+
T Consensus 665 k~rFANHS~nPNCYAkvm~V~GdhR---------IGifAkRaIeagEELffDYr 709 (739)
T KOG1079|consen 665 KIRFANHSFNPNCYAKVMMVAGDHR---------IGIFAKRAIEAGEELFFDYR 709 (739)
T ss_pred hhhhccCCCCCCcEEEEEEecCCcc---------eeeeehhhcccCceeeeeec
Confidence 34589999999986542 33322 34568999999999999986
No 10
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=78.91 E-value=2.6 Score=35.98 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=25.6
Q ss_pred EEeecCCceeEEEEcCCC-CCCeEEEeCcccccCh
Q 008178 28 IKYSDESKGFGIFSSNEF-SDGVLLVVPLDLAITP 61 (575)
Q Consensus 28 i~~~~~~~GrGl~A~~dI-~ge~l~~IP~~~~ls~ 61 (575)
+...+ +.|+|++|+++| +|+.|+..|-..+...
T Consensus 4 ~~~~~-~~G~gl~a~~~i~~g~~i~~~~g~~~~~~ 37 (116)
T smart00317 4 VFKSP-GKGWGVRATEDIPKGEFIGEYVGEIITSE 37 (116)
T ss_pred EEecC-CCcEEEEECCccCCCCEEEEEEeEEECHH
Confidence 34444 599999999999 9998888877766543
No 11
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=75.75 E-value=2.4 Score=50.54 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=32.9
Q ss_pred hhcccCCCCCCCceEEEcC-CCcccccCcceeEEEeecccCCCCCeEEeccC
Q 008178 268 GIDFCNHDLKAAATWEVDG-TGLITGVPFSMYLLSVERSSFHSEKEISISYG 318 (575)
Q Consensus 268 l~DmlNH~~~~~~~~~~d~-~g~~~~~~~s~~l~~~a~~~i~~GeEI~isYG 318 (575)
++=++||+..|||.-.+-. +|.. .+++.|.|+|.+||||+-+|-
T Consensus 939 iAr~InHsC~PNCyakvi~V~g~~-------~IvIyakr~I~~~EElTYDYk 983 (1005)
T KOG1080|consen 939 IARFINHSCNPNCYAKVITVEGDK-------RIVIYSKRDIAAGEELTYDYK 983 (1005)
T ss_pred hhheeecccCCCceeeEEEecCee-------EEEEEEecccccCceeeeecc
Confidence 4558999999999654322 2322 477889999999999998774
No 12
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=75.05 E-value=1.8 Score=47.96 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=33.0
Q ss_pred cccCCCCCCCceEEEcC-CCcccccCcceeEEEeecccCCCCCeEEeccCC
Q 008178 270 DFCNHDLKAAATWEVDG-TGLITGVPFSMYLLSVERSSFHSEKEISISYGN 319 (575)
Q Consensus 270 DmlNH~~~~~~~~~~d~-~g~~~~~~~s~~l~~~a~~~i~~GeEI~isYG~ 319 (575)
=++||+..+|+.+.... .|.+ .+...+.++|++||||++.||.
T Consensus 407 r~~nHS~~pN~~~~~~~~~g~~-------~~~~~~~rDI~~geEl~~dy~~ 450 (480)
T COG2940 407 RFINHSCTPNCEASPIEVNGIF-------KISIYAIRDIKAGEELTYDYGP 450 (480)
T ss_pred ceeecCCCCCcceecccccccc-------eeeecccccchhhhhhcccccc
Confidence 38999999999875432 3311 3566789999999999999985
No 13
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=66.92 E-value=4.8 Score=42.92 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=34.3
Q ss_pred cccCCCCCCCceEEEcC-CCcccccCcceeEEEeecccCCCCCeEEeccCCCCh
Q 008178 270 DFCNHDLKAAATWEVDG-TGLITGVPFSMYLLSVERSSFHSEKEISISYGNKGN 322 (575)
Q Consensus 270 DmlNH~~~~~~~~~~d~-~g~~~~~~~s~~l~~~a~~~i~~GeEI~isYG~~~N 322 (575)
=++||+..||..|..-- +...... ..+.+-+.++|.+|+|++..||..-+
T Consensus 274 RfinHSC~PN~~~~~v~~~~~~~~~---~~i~ffa~~~I~p~~ELT~dYg~~~~ 324 (364)
T KOG1082|consen 274 RFINHSCSPNLLYQAVFQDEFVLLY---LRIGFFALRDISPGEELTLDYGKAYK 324 (364)
T ss_pred ccccCCCCccceeeeeeecCCccch---heeeeeeccccCCCcccchhhccccc
Confidence 38999999998774311 1111111 14556689999999999999997444
No 14
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=65.63 E-value=5.9 Score=46.69 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=32.7
Q ss_pred hhcccCCCCCCCceEE-EcCCCcccccCcceeEEEeecccCCCCCeEEeccCCC
Q 008178 268 GIDFCNHDLKAAATWE-VDGTGLITGVPFSMYLLSVERSSFHSEKEISISYGNK 320 (575)
Q Consensus 268 l~DmlNH~~~~~~~~~-~d~~g~~~~~~~s~~l~~~a~~~i~~GeEI~isYG~~ 320 (575)
.+-+.||+.++||... +.-+|.. .+.+.|.++|.+||||+..|.-+
T Consensus 1250 ~~RfinhscKPNc~~qkwSVNG~~-------Rv~L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1250 GARFINHSCKPNCEMQKWSVNGEY-------RVGLFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred cccccccccCCCCcccccccccee-------eeeeeecCCCCCCceEEEecccc
Confidence 3446789999888532 2223432 35677999999999999999754
No 15
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.05 E-value=6.7 Score=41.51 Aligned_cols=71 Identities=13% Similarity=-0.025 Sum_probs=52.4
Q ss_pred cceecchhcccCCCCCC-Cc-eEEEcCCCcccccCcceeEEEeecccCCCCCeEEeccCCCChHHHHHhCCc-ccC-CCC
Q 008178 262 IEGLVPGIDFCNHDLKA-AA-TWEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISYGNKGNEELLYLYGF-VID-NNP 337 (575)
Q Consensus 262 ~~~LVPl~DmlNH~~~~-~~-~~~~d~~g~~~~~~~s~~l~~~a~~~i~~GeEI~isYG~~~N~eLL~~YGF-v~~-~Np 337 (575)
..+|+|+++|+|-.... |. ..-+|..+. ..|++.|.| |.|..++|+...+.++...||| ... --|
T Consensus 269 ~ka~c~gihm~~g~~~l~niv~~l~D~~~d---------~tm~~~R~i--l~ql~nt~teld~~e~~~syd~ftkkE~~p 337 (466)
T KOG1338|consen 269 TKALCVGIHMVWGILKLYNIVQILMDVPND---------DTMRNMRLI--LLQLHNTRTELDINEFHSSYDTFTKKEVKP 337 (466)
T ss_pred hhhccceeeeecceeecchHHHHHhcCCCc---------chHHHHHHH--HHHhccchhhhhhHHHHHhhhhhhhccccc
Confidence 47999999999988652 32 222332232 457778888 9999999999999999999994 443 478
Q ss_pred CceEEE
Q 008178 338 DDYLMI 343 (575)
Q Consensus 338 ~D~v~i 343 (575)
++.+-+
T Consensus 338 ~~g~lv 343 (466)
T KOG1338|consen 338 AIGKLV 343 (466)
T ss_pred cceeee
Confidence 887654
No 16
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=27.13 E-value=49 Score=35.69 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=28.4
Q ss_pred EEEeecccCCCCCeEEeccCCCChHHHHHhCC
Q 008178 299 LLSVERSSFHSEKEISISYGNKGNEELLYLYG 330 (575)
Q Consensus 299 l~~~a~~~i~~GeEI~isYG~~~N~eLL~~YG 330 (575)
+..++.|+|++|||+.+.||.--+.+|...+|
T Consensus 124 Ifyrt~r~I~p~eELlVWY~~e~~~~L~~~~~ 155 (396)
T KOG2461|consen 124 IFYRTIRDIRPNEELLVWYGSEYAEELAYGHG 155 (396)
T ss_pred eEEEecccCCCCCeEEEEeccchHhHhcccCC
Confidence 45567999999999999999988888888888
No 17
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=21.49 E-value=59 Score=37.84 Aligned_cols=56 Identities=23% Similarity=0.326 Sum_probs=35.0
Q ss_pred cccCCCCCCCceE---EEcCCCcccccCcceeEEEeecccCCCCCeEEeccC----CCChHHHHHhCC
Q 008178 270 DFCNHDLKAAATW---EVDGTGLITGVPFSMYLLSVERSSFHSEKEISISYG----NKGNEELLYLYG 330 (575)
Q Consensus 270 DmlNH~~~~~~~~---~~d~~g~~~~~~~s~~l~~~a~~~i~~GeEI~isYG----~~~N~eLL~~YG 330 (575)
=++||+..||... .+|.-.. +.| .+.+-+.+-|++|.|++-.|| .-.--+|+..-|
T Consensus 1191 RfLNHSC~PNl~VQnVfvdTHdl--rfP---wVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CG 1253 (1262)
T KOG1141|consen 1191 RFLNHSCDPNLHVQNVFVDTHDL--RFP---WVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCG 1253 (1262)
T ss_pred hhhccCCCccceeeeeeeecccc--CCc---hhhhhhhhhhccCceeeeeccccccccccceEEEecC
Confidence 3899999998643 4443211 223 233346899999999999997 234445554444
No 18
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=21.23 E-value=1.2e+02 Score=32.96 Aligned_cols=59 Identities=27% Similarity=0.405 Sum_probs=41.1
Q ss_pred ceecchhcccCCCCCCCceEEEcCCCcccccCcceeEEEeecccCCCCC-eEEeccCC--CC----hHHHHHhCCc
Q 008178 263 EGLVPGIDFCNHDLKAAATWEVDGTGLITGVPFSMYLLSVERSSFHSEK-EISISYGN--KG----NEELLYLYGF 331 (575)
Q Consensus 263 ~~LVPl~DmlNH~~~~~~~~~~d~~g~~~~~~~s~~l~~~a~~~i~~Ge-EI~isYG~--~~----N~eLL~~YGF 331 (575)
.++-|..=++||+..+|+...++..+ ..+.....+.+++ +++++|-. .+ ...|-..|.|
T Consensus 200 ~~l~~~~~~~~hsC~pn~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f 265 (482)
T KOG2084|consen 200 RGLFPGSSLFNHSCFPNISVIFDGRG----------LALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLF 265 (482)
T ss_pred eeecccchhcccCCCCCeEEEECCce----------eEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccce
Confidence 67888888999999999986665443 2334566677666 99999974 22 2445556666
Done!