BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008179
         (575 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P42175|NARG_BACSU Nitrate reductase alpha chain OS=Bacillus subtilis (strain 168)
            GN=narG PE=3 SV=2
          Length = 1228

 Score = 35.4 bits (80), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 496  NMFLDCERRNFVIQAYHRDLLVHKVSPGAATMHH----QLVLPGTSLAGKNPGKRSS 548
            N +++C  RN V+ A  R +L H++  G A MHH     + +PGT L     G  +S
Sbjct: 1125 NDWIECFNRNGVVVA--RAVLSHRIPKGMAFMHHAQDRHINVPGTKLTNNRGGTHNS 1179


>sp|C3N792|TMCA_SULIY Putative tRNA(Met) cytidine acetyltransferase OS=Sulfolobus
           islandicus (strain Y.G.57.14 / Yellowstone #1)
           GN=YG5714_1830 PE=3 SV=1
          Length = 743

 Score = 35.0 bits (79), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 19/83 (22%)

Query: 330 IVVRNIPYNDSRRNGKVPKLLLHRIFPNVRYSIWIDGKLQLVVDPYQILERFLWRENATF 389
           +++RN  Y++ RR G+VP L +++I        +I+GK+     PY ++      E A F
Sbjct: 640 LLMRN-TYSERRREGEVPDLYVNKI------KAYIEGKV-----PYNVIA-----ETAHF 682

Query: 390 AISRHYRRFDV--FVEAEANKAA 410
            I++H+    V   +EAEA+  A
Sbjct: 683 LITKHFLELKVNLSIEAEASLVA 705


>sp|Q54ER5|FORJ_DICDI Formin-J OS=Dictyostelium discoideum GN=forJ PE=1 SV=1
          Length = 2546

 Score = 33.9 bits (76), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 1    MTGGSLGQRTASYGSLQLLNNNGIVGKPTSSIFTRKPSP 39
            ++ G++   T SY SL  +N N +V  P+SSI + KPSP
Sbjct: 2460 ISSGNISNNT-SYSSLGSMNGNNLVASPSSSITSCKPSP 2497


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.136    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 225,998,642
Number of Sequences: 539616
Number of extensions: 10342602
Number of successful extensions: 40271
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 165
Number of HSP's that attempted gapping in prelim test: 38354
Number of HSP's gapped (non-prelim): 1524
length of query: 575
length of database: 191,569,459
effective HSP length: 123
effective length of query: 452
effective length of database: 125,196,691
effective search space: 56588904332
effective search space used: 56588904332
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)