Query 008179
Match_columns 575
No_of_seqs 123 out of 140
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 20:29:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04765 DUF616: Protein of un 100.0 5E-113 1E-117 867.0 27.8 304 198-512 1-305 (305)
2 cd04194 GT8_A4GalT_like A4GalT 93.5 0.11 2.3E-06 51.0 4.8 159 296-487 29-199 (248)
3 PF01501 Glyco_transf_8: Glyco 88.2 0.79 1.7E-05 43.3 5.0 115 343-486 84-204 (250)
4 cd00505 Glyco_transf_8 Members 87.3 4 8.6E-05 40.3 9.4 160 296-487 29-200 (246)
5 PF03407 Nucleotid_trans: Nucl 69.3 12 0.00025 35.9 6.0 90 357-488 66-156 (212)
6 cd06429 GT8_like_1 GT8_like_1 58.2 14 0.00031 37.9 4.5 96 296-394 28-148 (257)
7 cd02537 GT8_Glycogenin Glycoge 48.0 83 0.0018 31.4 7.9 53 327-380 53-112 (240)
8 PF03452 Anp1: Anp1; InterPro 45.9 20 0.00044 37.6 3.4 46 349-397 134-179 (269)
9 cd06432 GT8_HUGT1_C_like The C 45.4 20 0.00043 36.4 3.2 96 296-394 29-130 (248)
10 cd06430 GT8_like_2 GT8_like_2 42.7 48 0.001 35.4 5.6 34 348-381 87-120 (304)
11 PLN02742 Probable galacturonos 41.3 36 0.00078 39.0 4.7 95 296-393 255-386 (534)
12 PLN02523 galacturonosyltransfe 39.6 21 0.00046 41.0 2.6 44 349-394 368-411 (559)
13 PF03314 DUF273: Protein of un 38.4 25 0.00054 36.2 2.7 41 351-393 35-75 (222)
14 PF05637 Glyco_transf_34: gala 37.7 23 0.00051 35.8 2.3 52 327-379 42-97 (239)
15 cd06431 GT8_LARGE_C LARGE cata 34.5 42 0.0009 34.9 3.6 98 296-394 29-135 (280)
16 PLN02718 Probable galacturonos 30.8 1E+02 0.0022 36.1 6.1 96 296-394 341-452 (603)
17 PRK15171 lipopolysaccharide 1, 29.4 62 0.0013 34.4 4.0 45 346-392 108-153 (334)
18 KOG0400 40S ribosomal protein 20.4 90 0.0019 30.3 2.8 49 388-455 10-58 (151)
19 cd02515 Glyco_transf_6 Glycosy 20.4 68 0.0015 34.0 2.2 112 255-375 20-141 (271)
No 1
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=100.00 E-value=5.2e-113 Score=867.03 Aligned_cols=304 Identities=58% Similarity=1.019 Sum_probs=296.7
Q ss_pred ccceeecCCCCCcCCCCCCCCCCCCChhhhcccccccCceeeeceeecCCCCCCCCCCcCChhcHHHHhcCCcEEEEEEe
Q 008179 198 NLTYIHDENPVKTETHGGSDFGGYPSLKQRNGSYEIKESMTVHCGFVKGSRPGRQSGFDLDEFDLTELEQFHDVIVASAI 277 (575)
Q Consensus 198 ~l~Yi~~~~~~~~~~~~~~~FgG~~sl~~R~~sF~~~~~~~vhCGF~~g~~p~~~tGfdi~~~D~~~m~~C~kVVVYTAI 277 (575)
||+||.+|+.+. +.++++|||||||+||++||+++++|+|||||++ ||||||+|.|+.+|++|+ |||||||
T Consensus 1 nl~y~~~~~~~~--~~~~~~f~g~~s~~~R~~sf~~~~~~~v~Cgf~~------~~gf~i~~~d~~~m~~c~-vvV~saI 71 (305)
T PF04765_consen 1 NLTYIEEENKPE--SGRGPSFGGNQSLEERESSFDIQEDMTVHCGFVK------NTGFDISESDRRYMEKCR-VVVYSAI 71 (305)
T ss_pred CCcccccccccc--cCCCCCcCCcCCHHHHHHhcCCCCCceecccccc------CCCCCCCHHHHHHHhcCC-EEEEEEe
Confidence 799999999666 7889999999999999999999999999999999 799999999999999999 9999999
Q ss_pred eCCCcccCCCcccCccccCCccEEEEechhhHHhhhccccc-CCCCcccceEEEEeccCCCCCccccCccccccccccCC
Q 008179 278 FGNYDLIQQPKKISQAARQNVPFYMFVDEETEAYMKNSSIL-DSNKRVGLWRIIVVRNIPYNDSRRNGKVPKLLLHRIFP 356 (575)
Q Consensus 278 FGnYD~L~qP~~Is~~s~d~VCFimFTDe~tl~~l~~~~~~-d~~~k~G~WrIV~V~nlpy~D~rrngKipKiLpHrLFP 356 (575)
||+||+|+||++|+++++++|||+||||+.|+++|++++.+ +++.++|+||||+|+++||+|+|||||+||||||+|||
T Consensus 72 FG~yD~l~qP~~i~~~s~~~vcf~mF~D~~t~~~l~~~~~~~~~~~~ig~WrIv~v~~lp~~d~rr~~r~~K~lpHrlfp 151 (305)
T PF04765_consen 72 FGNYDKLRQPKNISEYSKKNVCFFMFVDEETLKSLESEGHIPDENKKIGIWRIVVVKNLPYDDPRRNGRIPKLLPHRLFP 151 (305)
T ss_pred cCCCccccCchhhCHHHhcCccEEEEEehhhHHHHHhcCCccccccccCceEEEEecCCCCcchhhcCcccceeccccCC
Confidence 99999999999999999999999999999999999998755 88999999999999999999999999999999999999
Q ss_pred CCCEEEEEecceEEeeCHHHHHHHHhhccCCeEEEecCCCCCChHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCcccC
Q 008179 357 NVRYSIWIDGKLQLVVDPYQILERFLWRENATFAISRHYRRFDVFVEAEANKAAGKYDNASIDYQVEFYKNEGLTPYSEA 436 (575)
Q Consensus 357 nyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIskHp~R~cVYEEAeAc~~~~K~d~~~I~~Qme~Yr~eGL~~~s~~ 436 (575)
||+|||||||||+|++||++|||++||+++++|||++||.|+||||||+||++++||+++.|++||++|+++|||+|+.+
T Consensus 152 ~y~ySIWID~ki~L~~Dp~~lie~~l~~~~~~~Ai~~H~~R~cvyeEa~a~~~~~k~~~~~I~~Qm~~Y~~eGlp~~s~~ 231 (305)
T PF04765_consen 152 NYDYSIWIDGKIQLIVDPLLLIERFLWRKNADIAISKHPERNCVYEEAEACKRLGKYDPERIDEQMEFYKQEGLPPWSPA 231 (305)
T ss_pred CCceEEEEeeeEEEecCHHHHHHHHHhcCCCcEEEeCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcceeEecccCCchhhhHHHHHHHHhcCCCCCcccHHHHHHHhhccCcceeeccccccchhhhhhccc
Q 008179 437 KLPITSDVPEGCVIIREHIPITNLFSCLWFNEVDRFTARDQLSFSTVRDKIMAKVNWTVNMFLDCERRNFVIQAYH 512 (575)
Q Consensus 437 klP~~sgLpE~~VIIR~Htp~snlFmclWFnEv~rfS~RDQLSF~YVl~Kl~~~v~~~lnMF~dcerr~~v~~~~H 512 (575)
|+|+.+|||||+||||+|++++|+|||+|||||++||+||||||+||+||++. +|++|||+|||||++|++.+|
T Consensus 232 k~~l~s~v~E~~iIiR~H~~~~nlf~clWfnEv~rfs~RDQLSF~Yv~wk~~~--~~~~~mf~~~~~~~~~~~~~h 305 (305)
T PF04765_consen 232 KLPLPSDVPEGNIIIRKHNPMSNLFMCLWFNEVERFSPRDQLSFPYVLWKLGP--KFKLNMFKDCERRQLVVLYRH 305 (305)
T ss_pred ccccccCCccceEEEecCCchhHHHHHHHHHHHhcCCCcccchHHHHHHHhCC--cccchhhhHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999987 589999999999999999998
No 2
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=93.47 E-value=0.11 Score=50.96 Aligned_cols=159 Identities=17% Similarity=0.156 Sum_probs=87.2
Q ss_pred CCccEEEEechhhHHhhhcccccCCCCcccceEEEEeccCCCCCcc-ccCc-----cccccccccCCCCCEEEEEecceE
Q 008179 296 QNVPFYMFVDEETEAYMKNSSILDSNKRVGLWRIIVVRNIPYNDSR-RNGK-----VPKLLLHRIFPNVRYSIWIDGKLQ 369 (575)
Q Consensus 296 d~VCFimFTDe~tl~~l~~~~~~d~~~k~G~WrIV~V~nlpy~D~r-rngK-----ipKiLpHrLFPnyrYSIWIDgkIq 369 (575)
..++|++++|+.+....+.=..+.... ...-+++.++...+.+.. ...+ +.|++...+||+|+.-||||+-+.
T Consensus 29 ~~~~~~il~~~is~~~~~~L~~~~~~~-~~~i~~~~i~~~~~~~~~~~~~~~~~~~y~rl~l~~ll~~~~rvlylD~D~l 107 (248)
T cd04194 29 RDYDFYILNDDISEENKKKLKELLKKY-NSSIEFIKIDNDDFKFFPATTDHISYATYYRLLIPDLLPDYDKVLYLDADII 107 (248)
T ss_pred CceEEEEEeCCCCHHHHHHHHHHHHhc-CCeEEEEEcCHHHHhcCCcccccccHHHHHHHHHHHHhcccCEEEEEeCCEE
Confidence 478999999875443322111110000 122344444332122111 1222 348899999999999999999999
Q ss_pred EeeCHHHHHHHHhhccCCeEEEecCCCCCChHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCcccCCCCCCCCCCccee
Q 008179 370 LVVDPYQILERFLWRENATFAISRHYRRFDVFVEAEANKAAGKYDNASIDYQVEFYKNEGLTPYSEAKLPITSDVPEGCV 449 (575)
Q Consensus 370 L~~DP~~LLe~~Lwr~n~~fAIskHp~R~cVYEEAeAc~~~~K~d~~~I~~Qme~Yr~eGL~~~s~~klP~~sgLpE~~V 449 (575)
+..|+..|.+.-+ ++..+|+..|..- .+ +... + ...+. +...+.+-++|
T Consensus 108 v~~di~~L~~~~~--~~~~~aa~~d~~~--~~-~~~~-~-----------------~~~~~--------~~~~~yfNsGv 156 (248)
T cd04194 108 VLGDLSELFDIDL--GDNLLAAVRDPFI--EQ-EKKR-K-----------------RRLGG--------YDDGSYFNSGV 156 (248)
T ss_pred ecCCHHHHhcCCc--CCCEEEEEecccH--HH-HHHH-H-----------------hhcCC--------Ccccceeeecc
Confidence 9999999886433 4667888776431 11 1000 0 11122 12344566777
Q ss_pred EecccC-----CchhhhHHHHHHHHh-cCCCCCcccHHHHHHHh
Q 008179 450 IIREHI-----PITNLFSCLWFNEVD-RFTARDQLSFSTVRDKI 487 (575)
Q Consensus 450 IIR~Ht-----p~snlFmclWFnEv~-rfS~RDQLSF~YVl~Kl 487 (575)
++=+-. ...+.++ .|..+.. ++.-.||-.++.+.+..
T Consensus 157 ~l~nl~~~r~~~~~~~~~-~~~~~~~~~~~~~DQd~LN~~~~~~ 199 (248)
T cd04194 157 LLINLKKWREENITEKLL-ELIKEYGGRLIYPDQDILNAVLKDK 199 (248)
T ss_pred hheeHHHHHHhhhHHHHH-HHHHhCCCceeeCChHHHHHHHhCC
Confidence 763321 1222221 3334332 36679999999999863
No 3
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=88.24 E-value=0.79 Score=43.29 Aligned_cols=115 Identities=14% Similarity=0.173 Sum_probs=65.6
Q ss_pred cCccccccccccCCCCCEEEEEecceEEeeCHHHHHHHHhhccCCeEEEecCCCCCChHHHHHHHHHhCCCChHHHHHHH
Q 008179 343 NGKVPKLLLHRIFPNVRYSIWIDGKLQLVVDPYQILERFLWRENATFAISRHYRRFDVFVEAEANKAAGKYDNASIDYQV 422 (575)
Q Consensus 343 ngKipKiLpHrLFPnyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIskHp~R~cVYEEAeAc~~~~K~d~~~I~~Qm 422 (575)
..-+.|++.+.+|++|+--||+|+-+.+..|+..|.+.-+ ++..+|+... ..+
T Consensus 84 ~~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~--~~~~~~a~~~------------------------~~~- 136 (250)
T PF01501_consen 84 PATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDL--QGKYLAAVED------------------------ESF- 136 (250)
T ss_dssp GGGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC-----TTSSEEEEE-----------------------------
T ss_pred HHHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccc--hhhhcccccc------------------------chh-
Confidence 3344699999999999999999999999999999987554 3556777666 000
Q ss_pred HHHHhCCCCCcccCCCCCCCCCCcceeEecccCC--chhhhHHHHHHHHh----cCCCCCcccHHHHHHH
Q 008179 423 EFYKNEGLTPYSEAKLPITSDVPEGCVIIREHIP--ITNLFSCLWFNEVD----RFTARDQLSFSTVRDK 486 (575)
Q Consensus 423 e~Yr~eGL~~~s~~klP~~sgLpE~~VIIR~Htp--~snlFmclWFnEv~----rfS~RDQLSF~YVl~K 486 (575)
..+ ..+-........+...+.+-++|++=+-.. ..++ ...+.+.++ +..-.||=-|+++...
T Consensus 137 ~~~-~~~~~~~~~~~~~~~~~~fNsGv~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~DQ~~ln~~~~~ 204 (250)
T PF01501_consen 137 DNF-PNKRFPFSERKQPGNKPYFNSGVMLFNPSKWRKENI-LQKLIEWLEQNGMKLGFPDQDILNIVFYG 204 (250)
T ss_dssp HHH-HTSTTSSEEECESTTTTSEEEEEEEEEHHHHHHHHH-HHHHHHHHHHTTTT-SSCHHHHHHHHHTT
T ss_pred hhh-hhcccchhhcccCcccccccCcEEEEeechhhhhhh-hhhhhhhhhhcccccCcCchHHHhhhccc
Confidence 000 111111122223445677788888744332 2222 222222222 2455899999999873
No 4
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=87.28 E-value=4 Score=40.35 Aligned_cols=160 Identities=13% Similarity=0.168 Sum_probs=92.4
Q ss_pred CCccEEEEechhhHHhhhcccccCCCCcccceEEEEeccCCCC------CccccCccccccccccCCCCCEEEEEecceE
Q 008179 296 QNVPFYMFVDEETEAYMKNSSILDSNKRVGLWRIIVVRNIPYN------DSRRNGKVPKLLLHRIFPNVRYSIWIDGKLQ 369 (575)
Q Consensus 296 d~VCFimFTDe~tl~~l~~~~~~d~~~k~G~WrIV~V~nlpy~------D~rrngKipKiLpHrLFPnyrYSIWIDgkIq 369 (575)
+.+.|+.++|..+....+.-..+-.. .....+++.++...+. ......-+.|++..+|||+++--||+|+-+.
T Consensus 29 ~~~~~~il~~~is~~~~~~L~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~y~RL~i~~llp~~~kvlYLD~D~i 107 (246)
T cd00505 29 KPLRFHVLTNPLSDTFKAALDNLRKL-YNFNYELIPVDILDSVDSEHLKRPIKIVTLTKLHLPNLVPDYDKILYVDADIL 107 (246)
T ss_pred CCeEEEEEEccccHHHHHHHHHHHhc-cCceEEEEeccccCcchhhhhcCccccceeHHHHHHHHhhccCeEEEEcCCee
Confidence 47889999988554322211111000 0123455555322221 2223444679999999999999999999999
Q ss_pred EeeCHHHHHHHHhhccCCeEEEecCCCCCChHHHHHHHHHhCCCChHHHHHHHHHH-HhCCCCCcccCCCCCCCCCCcce
Q 008179 370 LVVDPYQILERFLWRENATFAISRHYRRFDVFVEAEANKAAGKYDNASIDYQVEFY-KNEGLTPYSEAKLPITSDVPEGC 448 (575)
Q Consensus 370 L~~DP~~LLe~~Lwr~n~~fAIskHp~R~cVYEEAeAc~~~~K~d~~~I~~Qme~Y-r~eGL~~~s~~klP~~sgLpE~~ 448 (575)
+..|+..|.+--+ ++..+|+..-.. .. ... +.| +..|+. .....+-++
T Consensus 108 v~~di~~L~~~~l--~~~~~aav~d~~----~~------~~~-----------~~~~~~~~~~--------~~~~yfNsG 156 (246)
T cd00505 108 VLTDIDELWDTPL--GGQELAAAPDPG----DR------REG-----------KYYRQKRSHL--------AGPDYFNSG 156 (246)
T ss_pred eccCHHHHhhccC--CCCeEEEccCch----hh------hcc-----------chhhcccCCC--------CCCCceeee
Confidence 9999999987655 456788764321 00 000 111 122331 123345678
Q ss_pred eEecccCCc-----hhhhHHHHHHHHhcCCCCCcccHHHHHHHh
Q 008179 449 VIIREHIPI-----TNLFSCLWFNEVDRFTARDQLSFSTVRDKI 487 (575)
Q Consensus 449 VIIR~Htp~-----snlFmclWFnEv~rfS~RDQLSF~YVl~Kl 487 (575)
|++=+-... .......|.+...+..--||=.++.++...
T Consensus 157 Vmlinl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~~~~~ 200 (246)
T cd00505 157 VFVVNLSKERRNQLLKVALEKWLQSLSSLSGGDQDLLNTFFKQV 200 (246)
T ss_pred eEEEechHHHHHHHHHHHHHHHHhhcccCccCCcHHHHHHHhcC
Confidence 887443322 122234455555678889999999998764
No 5
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=69.26 E-value=12 Score=35.92 Aligned_cols=90 Identities=14% Similarity=0.134 Sum_probs=62.7
Q ss_pred CCCEEEEEecceEEeeCHHHHHHHHhhccCCeEEEecCCCCCChHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCcccC
Q 008179 357 NVRYSIWIDGKLQLVVDPYQILERFLWRENATFAISRHYRRFDVFVEAEANKAAGKYDNASIDYQVEFYKNEGLTPYSEA 436 (575)
Q Consensus 357 nyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIskHp~R~cVYEEAeAc~~~~K~d~~~I~~Qme~Yr~eGL~~~s~~ 436 (575)
+|+ -+++|+=+.+..||..+++. .+.++.++.-....... +
T Consensus 66 G~~-vl~~D~Dvv~~~dp~~~~~~----~~~Di~~~~d~~~~~~~-----------------------~----------- 106 (212)
T PF03407_consen 66 GYD-VLFSDADVVWLRDPLPYFEN----PDADILFSSDGWDGTNS-----------------------D----------- 106 (212)
T ss_pred CCc-eEEecCCEEEecCcHHhhcc----CCCceEEecCCCcccch-----------------------h-----------
Confidence 444 56899999999999999821 45677766522210000 0
Q ss_pred CCCCCCCCCcceeEecccCCchhhhHHHHHHHHhcCCC-CCcccHHHHHHHhh
Q 008179 437 KLPITSDVPEGCVIIREHIPITNLFSCLWFNEVDRFTA-RDQLSFSTVRDKIM 488 (575)
Q Consensus 437 klP~~sgLpE~~VIIR~Htp~snlFmclWFnEv~rfS~-RDQLSF~YVl~Kl~ 488 (575)
.....+-+++++=+.++.+..|+..|-......+. .||-.|+.++....
T Consensus 107 ---~~~~~~n~G~~~~r~t~~~~~~~~~w~~~~~~~~~~~DQ~~~n~~l~~~~ 156 (212)
T PF03407_consen 107 ---RNGNLVNTGFYYFRPTPRTIAFLEDWLERMAESPGCWDQQAFNELLREQA 156 (212)
T ss_pred ---hcCCccccceEEEecCHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhcc
Confidence 01112246777766699998899999999999955 79999999999865
No 6
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=58.21 E-value=14 Score=37.87 Aligned_cols=96 Identities=15% Similarity=0.252 Sum_probs=60.5
Q ss_pred CCccEEEEechhhHHhhhcccccCCCCcccceEEEEeccCCCCC-----c---------------cccCc-----ccccc
Q 008179 296 QNVPFYMFVDEETEAYMKNSSILDSNKRVGLWRIIVVRNIPYND-----S---------------RRNGK-----VPKLL 350 (575)
Q Consensus 296 d~VCFimFTDe~tl~~l~~~~~~d~~~k~G~WrIV~V~nlpy~D-----~---------------rrngK-----ipKiL 350 (575)
.+++|..|||..+...++.--... ....-..+++.+++..+.+ + .+... +.+++
T Consensus 28 ~~~~fhvvtd~~s~~~~~~~~~~~-~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ 106 (257)
T cd06429 28 SNLVFHIVTDNQNYGAMRSWFDLN-PLKIATVKVLNFDDFKLLGKVKVDSLMQLESEADTSNLKQRKPEYISLLNFARFY 106 (257)
T ss_pred CceEEEEecCccCHHHHHHHHHhc-CCCCceEEEEEeCcHHhhcccccchhhhhhccccccccccCCccccCHHHHHHHH
Confidence 478999999988766555321111 1112345666664432211 1 11111 34667
Q ss_pred ccccCCCCCEEEEEecceEEeeCHHHHHHHHhhccCCeEEEecC
Q 008179 351 LHRIFPNVRYSIWIDGKLQLVVDPYQILERFLWRENATFAISRH 394 (575)
Q Consensus 351 pHrLFPnyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIskH 394 (575)
.-.+||+++--||+|+-+.+.+|...|.+.=| ++..+|+...
T Consensus 107 ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl--~~~~~aav~d 148 (257)
T cd06429 107 LPELFPKLEKVIYLDDDVVVQKDLTELWNTDL--GGGVAGAVET 148 (257)
T ss_pred HHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCC--CCCEEEEEhh
Confidence 77889999999999999999999999887544 3556766554
No 7
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=47.99 E-value=83 Score=31.38 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=38.3
Q ss_pred eEEEEeccCCCC-------CccccCccccccccccCCCCCEEEEEecceEEeeCHHHHHHH
Q 008179 327 WRIIVVRNIPYN-------DSRRNGKVPKLLLHRIFPNVRYSIWIDGKLQLVVDPYQILER 380 (575)
Q Consensus 327 WrIV~V~nlpy~-------D~rrngKipKiLpHrLFPnyrYSIWIDgkIqL~~DP~~LLe~ 380 (575)
++++.|+.+... +.+-.+-+.|+..-.+ .+|+--||+|+-+.+..|+..|.+.
T Consensus 53 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~kl~~~~l-~~~drvlylD~D~~v~~~i~~Lf~~ 112 (240)
T cd02537 53 WIVREVEPIDPPDSANLLKRPRFKDTYTKLRLWNL-TEYDKVVFLDADTLVLRNIDELFDL 112 (240)
T ss_pred CEEEecCccCCcchhhhccchHHHHHhHHHHhccc-cccceEEEEeCCeeEccCHHHHhCC
Confidence 677766554322 2233445678887776 5899999999999999998887753
No 8
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=45.88 E-value=20 Score=37.60 Aligned_cols=46 Identities=17% Similarity=0.462 Sum_probs=37.3
Q ss_pred ccccccCCCCCEEEEEecceEEeeCHHHHHHHHhhccCCeEEEecCCCC
Q 008179 349 LLLHRIFPNVRYSIWIDGKLQLVVDPYQILERFLWRENATFAISRHYRR 397 (575)
Q Consensus 349 iLpHrLFPnyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIskHp~R 397 (575)
+|.|-|=|..++.+|+|+-|. ..|-.||+.++. .+.+|-+++=+.+
T Consensus 134 LL~~aL~p~~swVlWlDaDIv--~~P~~lI~dli~-~~kdIivPn~~~~ 179 (269)
T PF03452_consen 134 LLSSALGPWHSWVLWLDADIV--ETPPTLIQDLIA-HDKDIIVPNCWRR 179 (269)
T ss_pred HHHhhcCCcccEEEEEecCcc--cCChHHHHHHHh-CCCCEEccceeec
Confidence 567777889999999999886 888899999985 5778876654444
No 9
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=45.38 E-value=20 Score=36.41 Aligned_cols=96 Identities=14% Similarity=0.192 Sum_probs=55.2
Q ss_pred CCccEEEEechhhHHhhhcccccCCCCcccceEEEEecc-CCCCCccccC--c--cccccccccCC-CCCEEEEEecceE
Q 008179 296 QNVPFYMFVDEETEAYMKNSSILDSNKRVGLWRIIVVRN-IPYNDSRRNG--K--VPKLLLHRIFP-NVRYSIWIDGKLQ 369 (575)
Q Consensus 296 d~VCFimFTDe~tl~~l~~~~~~d~~~k~G~WrIV~V~n-lpy~D~rrng--K--ipKiLpHrLFP-nyrYSIWIDgkIq 369 (575)
..+.|++++|..+.+..+.-..+.+.. ...=.++.+.. ..+....... . +..+++..+|| +++--||+|+-+-
T Consensus 29 ~~~~fyil~~~is~e~~~~l~~~~~~~-~~~i~~i~i~~~~~~~~~~~~~~~~~~y~rL~~~~lLP~~vdkvLYLD~Dil 107 (248)
T cd06432 29 SPVKFWFIKNFLSPQFKEFLPEMAKEY-GFEYELVTYKWPRWLHKQTEKQRIIWGYKILFLDVLFPLNVDKVIFVDADQI 107 (248)
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHHh-CCceEEEEecChhhhhcccccchhHHHHHHHHHHHhhhhccCEEEEEcCCce
Confidence 368999999977644333211110000 01113344431 1111111111 1 22366777899 6999999999999
Q ss_pred EeeCHHHHHHHHhhccCCeEEEecC
Q 008179 370 LVVDPYQILERFLWRENATFAISRH 394 (575)
Q Consensus 370 L~~DP~~LLe~~Lwr~n~~fAIskH 394 (575)
.+.|...|.+-=+ ++.-+|+..|
T Consensus 108 v~~dL~eL~~~dl--~~~~~Aav~d 130 (248)
T cd06432 108 VRTDLKELMDMDL--KGAPYGYTPF 130 (248)
T ss_pred ecccHHHHHhcCc--CCCeEEEeec
Confidence 9999888876544 4667888776
No 10
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=42.68 E-value=48 Score=35.39 Aligned_cols=34 Identities=18% Similarity=0.403 Sum_probs=30.7
Q ss_pred cccccccCCCCCEEEEEecceEEeeCHHHHHHHH
Q 008179 348 KLLLHRIFPNVRYSIWIDGKLQLVVDPYQILERF 381 (575)
Q Consensus 348 KiLpHrLFPnyrYSIWIDgkIqL~~DP~~LLe~~ 381 (575)
.++...+||+.+--||+|+-+.+.+|+..|.+-|
T Consensus 87 RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~~~ 120 (304)
T cd06430 87 RLFLPSLLPDVDSLLYVDTDILFLRPVEEIWSFL 120 (304)
T ss_pred HHHHHHHhhhhceEEEeccceeecCCHHHHHHHH
Confidence 3888999999999999999999999999998853
No 11
>PLN02742 Probable galacturonosyltransferase
Probab=41.30 E-value=36 Score=39.02 Aligned_cols=95 Identities=13% Similarity=0.182 Sum_probs=59.7
Q ss_pred CCccEEEEechhhHHhhhcccccCCCCcccceEEEEeccCCCCCc-------------------------------cccC
Q 008179 296 QNVPFYMFVDEETEAYMKNSSILDSNKRVGLWRIIVVRNIPYNDS-------------------------------RRNG 344 (575)
Q Consensus 296 d~VCFimFTDe~tl~~l~~~~~~d~~~k~G~WrIV~V~nlpy~D~-------------------------------rrng 344 (575)
.++-|..+||..+...++.= ......+.-.|+|..+++..+... .|+-
T Consensus 255 ~~~VFHiVTD~~n~~aM~~W-F~~n~~~~a~v~V~n~e~f~wl~~~~~pvl~ql~~~~~~~~yf~~~~~~~~~~~k~r~p 333 (534)
T PLN02742 255 DQLVFHLVTDEVNYGAMQAW-FAMNDFKGVTVEVQKIEEFSWLNASYVPVLKQLQDSDTQSYYFSGSQDDGKTEIKFRNP 333 (534)
T ss_pred CcEEEEEeechhhHHHHHHH-HhhCCCCccEEEEEEeccccccccccchHHHHhhhhhhhhhhcccccccccccccccCc
Confidence 45889999999988766631 001223345677777765322110 0111
Q ss_pred ccc------cccccccCCCCCEEEEEecceEEeeCHHHHHHHHhhccCCeEEEec
Q 008179 345 KVP------KLLLHRIFPNVRYSIWIDGKLQLVVDPYQILERFLWRENATFAISR 393 (575)
Q Consensus 345 Kip------KiLpHrLFPnyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIsk 393 (575)
++. +++.-++||+.+--||+|+-+.+.+|+..|.+-=| ++.-+|+..
T Consensus 334 ~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~~DL--~~~viaAVe 386 (534)
T PLN02742 334 KYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFSIDL--HGNVNGAVE 386 (534)
T ss_pred ccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhcCCC--CCCEEEEeC
Confidence 111 22333689999999999999999999888876434 355666663
No 12
>PLN02523 galacturonosyltransferase
Probab=39.59 E-value=21 Score=40.98 Aligned_cols=44 Identities=9% Similarity=0.234 Sum_probs=33.6
Q ss_pred ccccccCCCCCEEEEEecceEEeeCHHHHHHHHhhccCCeEEEecC
Q 008179 349 LLLHRIFPNVRYSIWIDGKLQLVVDPYQILERFLWRENATFAISRH 394 (575)
Q Consensus 349 iLpHrLFPnyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIskH 394 (575)
++.-++||+++--||+|.-+.+.+|...|.+-=| ++.-+|+...
T Consensus 368 f~IPeLLP~ldKVLYLD~DVVVq~DLseLw~iDL--~gkv~aAVeD 411 (559)
T PLN02523 368 FYLPEMYPKLHRILFLDDDVVVQKDLTGLWKIDM--DGKVNGAVET 411 (559)
T ss_pred HHHHHHhcccCeEEEEeCCEEecCCHHHHHhCcC--CCceEEEehh
Confidence 3455789999999999999999999888876333 3555666643
No 13
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=38.43 E-value=25 Score=36.15 Aligned_cols=41 Identities=22% Similarity=0.486 Sum_probs=34.3
Q ss_pred ccccCCCCCEEEEEecceEEeeCHHHHHHHHhhccCCeEEEec
Q 008179 351 LHRIFPNVRYSIWIDGKLQLVVDPYQILERFLWRENATFAISR 393 (575)
Q Consensus 351 pHrLFPnyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIsk 393 (575)
.+.++|++++-++||+-| .+++|...||+|+. .+.++-.+.
T Consensus 35 va~~L~~~~~vlflDaDi-gVvNp~~~iEefid-~~~Di~fyd 75 (222)
T PF03314_consen 35 VAKILPEYDWVLFLDADI-GVVNPNRRIEEFID-EGYDIIFYD 75 (222)
T ss_pred HHHHhccCCEEEEEcCCc-eeecCcccHHHhcC-CCCcEEEEe
Confidence 457789999999999999 55899999999995 577777664
No 14
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=37.72 E-value=23 Score=35.80 Aligned_cols=52 Identities=23% Similarity=0.516 Sum_probs=22.1
Q ss_pred eEEEEeccCCCCCccccCccccc--ccccc--CCCCCEEEEEecceEEeeCHHHHHH
Q 008179 327 WRIIVVRNIPYNDSRRNGKVPKL--LLHRI--FPNVRYSIWIDGKLQLVVDPYQILE 379 (575)
Q Consensus 327 WrIV~V~nlpy~D~rrngKipKi--LpHrL--FPnyrYSIWIDgkIqL~~DP~~LLe 379 (575)
..++.+....+.+.-+.+-+-|+ +-|.+ ||++++-+|+|+..-| .||..=|+
T Consensus 42 Y~~~~~~~~~~~~~~~~~~W~K~~~lr~~m~~~P~~~wv~~lD~Dali-~n~~~~L~ 97 (239)
T PF05637_consen 42 YDLYYRNIQEYDDPERPGSWAKIPALRAAMKKYPEAEWVWWLDSDALI-MNPDFSLE 97 (239)
T ss_dssp -EEEEE-S--S--SHHHHHHTHHHHHHHHHHH-TT-SEEEEE-TTEEE---------
T ss_pred CEEEEEChHHcCCCCCChhhHHHHHHHHHHHhCCCCCEEEEEcCCeEE-Eecccccc
Confidence 34444434445544444556665 33333 6999999999999855 44544443
No 15
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=34.53 E-value=42 Score=34.86 Aligned_cols=98 Identities=12% Similarity=0.160 Sum_probs=59.5
Q ss_pred CCccEEEEechhhHHhhhcccccCCCCcccceEEEEeccC--CC---CCccccCcc--ccccccccCC-CCCEEEEEecc
Q 008179 296 QNVPFYMFVDEETEAYMKNSSILDSNKRVGLWRIIVVRNI--PY---NDSRRNGKV--PKLLLHRIFP-NVRYSIWIDGK 367 (575)
Q Consensus 296 d~VCFimFTDe~tl~~l~~~~~~d~~~k~G~WrIV~V~nl--py---~D~rrngKi--pKiLpHrLFP-nyrYSIWIDgk 367 (575)
..++|+.|+|+...+.++.-...-+ ...-.+.++.+++. .+ ......+.+ .+++.+.+|| +++--||+|+-
T Consensus 29 ~~~~fhii~d~~s~~~~~~l~~~~~-~~~~~i~f~~i~~~~~~~~~~~~~~~s~~y~y~RL~ip~llp~~~dkvLYLD~D 107 (280)
T cd06431 29 NPLHFHLITDEIARRILATLFQTWM-VPAVEVSFYNAEELKSRVSWIPNKHYSGIYGLMKLVLTEALPSDLEKVIVLDTD 107 (280)
T ss_pred CCEEEEEEECCcCHHHHHHHHHhcc-ccCcEEEEEEhHHhhhhhccCcccchhhHHHHHHHHHHHhchhhcCEEEEEcCC
Confidence 5689999999776554332111100 11223555555321 11 111222322 4888999999 79999999999
Q ss_pred eEEeeCHHHHHHHHh-hccCCeEEEecC
Q 008179 368 LQLVVDPYQILERFL-WRENATFAISRH 394 (575)
Q Consensus 368 IqL~~DP~~LLe~~L-wr~n~~fAIskH 394 (575)
+.+.+|+..|.+-+. ...+.-+|+..+
T Consensus 108 iiv~~di~eL~~~~~~~~~~~~~a~v~~ 135 (280)
T cd06431 108 ITFATDIAELWKIFHKFTGQQVLGLVEN 135 (280)
T ss_pred EEEcCCHHHHHHHhhhcCCCcEEEEecc
Confidence 999999999998741 123445666654
No 16
>PLN02718 Probable galacturonosyltransferase
Probab=30.77 E-value=1e+02 Score=36.08 Aligned_cols=96 Identities=13% Similarity=0.222 Sum_probs=60.0
Q ss_pred CCccEEEEechhhHHhhhcccccCCCCcccceEEEEeccCC-----CCC-----ccccCc------cccccccccCCCCC
Q 008179 296 QNVPFYMFVDEETEAYMKNSSILDSNKRVGLWRIIVVRNIP-----YND-----SRRNGK------VPKLLLHRIFPNVR 359 (575)
Q Consensus 296 d~VCFimFTDe~tl~~l~~~~~~d~~~k~G~WrIV~V~nlp-----y~D-----~rrngK------ipKiLpHrLFPnyr 359 (575)
.++.|..|||..+...++.--.+. ......+.|+.+++.. |.+ +..+.+ +.+++.-.+||+++
T Consensus 341 ~~ivFHVvTD~is~~~mk~wf~l~-~~~~a~I~V~~Iddf~~lp~~~~~~lk~l~s~~~~~~S~~~y~Rl~ipellp~l~ 419 (603)
T PLN02718 341 EKIVFHVVTDSLNYPAISMWFLLN-PPGKATIQILNIDDMNVLPADYNSLLMKQNSHDPRYISALNHARFYLPDIFPGLN 419 (603)
T ss_pred CcEEEEEEeCCCCHHHHHHHHHhC-CCCCcEEEEEecchhccccccchhhhhhccccccccccHHHHHHHHHHHHhcccC
Confidence 368999999998876665211111 1113456676665321 111 001111 23556667899999
Q ss_pred EEEEEecceEEeeCHHHHHHHHhhccCCeEEEecC
Q 008179 360 YSIWIDGKLQLVVDPYQILERFLWRENATFAISRH 394 (575)
Q Consensus 360 YSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIskH 394 (575)
--||+|+-+.+.+|+..|.+-=| ++..+|+...
T Consensus 420 KvLYLD~DvVV~~DL~eL~~iDl--~~~v~aaVed 452 (603)
T PLN02718 420 KIVLFDHDVVVQRDLSRLWSLDM--KGKVVGAVET 452 (603)
T ss_pred EEEEEECCEEecCCHHHHhcCCC--CCcEEEEecc
Confidence 99999999999999888876433 3556666643
No 17
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=29.42 E-value=62 Score=34.35 Aligned_cols=45 Identities=7% Similarity=0.151 Sum_probs=34.4
Q ss_pred cccccccccCC-CCCEEEEEecceEEeeCHHHHHHHHhhccCCeEEEe
Q 008179 346 VPKLLLHRIFP-NVRYSIWIDGKLQLVVDPYQILERFLWRENATFAIS 392 (575)
Q Consensus 346 ipKiLpHrLFP-nyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIs 392 (575)
+.+++.-.+|| +++--||+|+-+.+.+|...|.+-=| ++..+|+.
T Consensus 108 Y~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl--~~~~~aav 153 (334)
T PRK15171 108 YFRFIIADYFIDKTDKVLYLDADIACKGSIKELIDLDF--AENEIAAV 153 (334)
T ss_pred HHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHhccC--CCCeEEEE
Confidence 44667778898 69999999999999999998886544 22445554
No 18
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=20.42 E-value=90 Score=30.29 Aligned_cols=49 Identities=24% Similarity=0.176 Sum_probs=35.1
Q ss_pred eEEEecCCCCCChHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCcccCCCCCCCCCCcceeEecccC
Q 008179 388 TFAISRHYRRFDVFVEAEANKAAGKYDNASIDYQVEFYKNEGLTPYSEAKLPITSDVPEGCVIIREHI 455 (575)
Q Consensus 388 ~fAIskHp~R~cVYEEAeAc~~~~K~d~~~I~~Qme~Yr~eGL~~~s~~klP~~sgLpE~~VIIR~Ht 455 (575)
.++-+.-|+|..+ =.|-|-+.+.|++|+-.+-+-|+++ +.-+||+|+-.
T Consensus 10 Gis~SAlPY~r~~-------PtWlK~~~ddvkeqI~K~akKGltp------------sqIGviLRDsh 58 (151)
T KOG0400|consen 10 GISGSALPYRRSV-------PTWLKLTADDVKEQIYKLAKKGLTP------------SQIGVILRDSH 58 (151)
T ss_pred ccccCccccccCC-------cHHHhcCHHHHHHHHHHHHHcCCCh------------hHceeeeeccc
Confidence 4555555665443 2355678899999999999999985 23578888753
No 19
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=20.36 E-value=68 Score=34.00 Aligned_cols=112 Identities=18% Similarity=0.226 Sum_probs=66.4
Q ss_pred CcCChhcHHHHhcCCcEEEEEEeeCCCcccCCCc-------ccCccccCCccEEEEechhhHHhhhcccccCCCCcccce
Q 008179 255 FDLDEFDLTELEQFHDVIVASAIFGNYDLIQQPK-------KISQAARQNVPFYMFVDEETEAYMKNSSILDSNKRVGLW 327 (575)
Q Consensus 255 fdi~~~D~~~m~~C~kVVVYTAIFGnYD~L~qP~-------~Is~~s~d~VCFimFTDe~tl~~l~~~~~~d~~~k~G~W 327 (575)
||.+--|..|-.+.-+|.+.---+|.|-..-+.= .+-. -.|-|+.|||.... +.+ -.++.... =
T Consensus 20 f~~~~l~~~y~~~n~tIgl~vfatGkY~~f~~~F~~SAEk~Fm~g---~~v~YyVFTD~~~~--~p~-v~lg~~r~---~ 90 (271)
T cd02515 20 FNPDVLDEYYRKQNITIGLTVFAVGKYTEFLERFLESAEKHFMVG---YRVIYYIFTDKPAA--VPE-VELGPGRR---L 90 (271)
T ss_pred CCHHHHHHHHHhcCCEEEEEEEEeccHHHHHHHHHHHHHHhccCC---CeeEEEEEeCCccc--Ccc-cccCCCce---e
Confidence 6666666666666666776666678887643331 1221 36899999997643 111 01111112 2
Q ss_pred EEEEe-ccCCCCCc--cccCccccccccccCCCCCEEEEEecceEEeeCHH
Q 008179 328 RIIVV-RNIPYNDS--RRNGKVPKLLLHRIFPNVRYSIWIDGKLQLVVDPY 375 (575)
Q Consensus 328 rIV~V-~nlpy~D~--rrngKipKiLpHrLFPnyrYSIWIDgkIqL~~DP~ 375 (575)
+++.| +...+.|. +|..-+-+...-+++-++||-...|+++.+..+..
T Consensus 91 ~V~~v~~~~~W~~~sl~Rm~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ig 141 (271)
T cd02515 91 TVLKIAEESRWQDISMRRMKTLADHIADRIGHEVDYLFCMDVDMVFQGPFG 141 (271)
T ss_pred EEEEeccccCCcHHHHHHHHHHHHHHHHhhcccCCEEEEeeCCceEeecCC
Confidence 34444 34555443 34444334444456889999999999999987655
Done!