Query 008179
Match_columns 575
No_of_seqs 123 out of 140
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 20:01:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008179.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008179hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g9r_A Glycosyl transferase; a 74.9 2.3 7.9E-05 42.0 4.2 108 346-485 84-197 (311)
2 3tzt_A Glycosyl transferase fa 74.7 1.5 5.1E-05 43.0 2.8 49 346-396 88-137 (276)
3 3u2u_A Glycogenin-1, GN-1, GN1 29.1 41 0.0014 33.2 3.9 51 327-378 57-116 (263)
4 2bn5_B U1 small nuclear ribonu 26.0 52 0.0018 22.3 2.7 18 146-165 4-21 (26)
5 1xv3_A Penaeidin-4D, PEN-4D; a 25.3 65 0.0022 24.9 3.5 16 169-184 20-36 (47)
6 1ll2_A Glycogenin-1; protein-s 20.1 82 0.0028 31.7 4.2 52 327-379 56-116 (333)
7 2jwa_A Receptor tyrosine-prote 18.6 38 0.0013 25.8 1.0 17 67-83 19-35 (44)
8 4gqb_C Histone H4 peptide; TIM 14.6 58 0.002 22.0 1.0 14 554-567 11-24 (26)
9 2ki9_A Cannabinoid receptor 2; 11.3 74 0.0025 21.3 0.8 21 65-85 2-22 (33)
10 3j1r_A Archaeal adhesion filam 10.9 61 0.0021 22.3 0.2 16 68-83 8-23 (26)
No 1
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=74.92 E-value=2.3 Score=41.99 Aligned_cols=108 Identities=14% Similarity=0.157 Sum_probs=66.2
Q ss_pred cccccccccCCCCCEEEEEecceEEeeCHHHHHHHHhhccCCeEEEecCCCCCChHHHHHHHHHhCCCChHHHHHHHHHH
Q 008179 346 VPKLLLHRIFPNVRYSIWIDGKLQLVVDPYQILERFLWRENATFAISRHYRRFDVFVEAEANKAAGKYDNASIDYQVEFY 425 (575)
Q Consensus 346 ipKiLpHrLFPnyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIskHp~R~cVYEEAeAc~~~~K~d~~~I~~Qme~Y 425 (575)
+.|++...+||+++-.||||+-+.+..|+..|.+.=+ ++..+|+..+ | +.+ ..+ +..
T Consensus 84 y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l--~~~~~aav~d----~-~~~------~~~----------~~~ 140 (311)
T 1g9r_A 84 YARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDL--GDNWLGASID----L-FVE------RQE----------GYK 140 (311)
T ss_dssp GGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCC--TTCSEEEEEC----H-HHH------TST----------THH
T ss_pred HHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCC--CCcEEEEEec----c-chh------hhH----------HHH
Confidence 4577778889999999999999999999998886423 3556777653 2 222 110 112
Q ss_pred HhCCCCCcccCCCCCCCCCCcceeEecccC-----CchhhhHHHHHHHHh-cCCCCCcccHHHHHH
Q 008179 426 KNEGLTPYSEAKLPITSDVPEGCVIIREHI-----PITNLFSCLWFNEVD-RFTARDQLSFSTVRD 485 (575)
Q Consensus 426 r~eGL~~~s~~klP~~sgLpE~~VIIR~Ht-----p~snlFmclWFnEv~-rfS~RDQLSF~YVl~ 485 (575)
...|+++ ....+-++|++=+-. ...+. ...|.++.. ++.--||=-++.++.
T Consensus 141 ~~~~~~~--------~~~yfNsGv~linl~~~r~~~~~~~-~~~~~~~~~~~~~~~DQd~lN~~f~ 197 (311)
T 1g9r_A 141 QKIGMAD--------GEYYFNAGVLLINLKKWRRHDIFKM-SSEWVEQYKDVMQYQDQDILNGLFK 197 (311)
T ss_dssp HHTTCCT--------TSCCEEEEEEEECHHHHTTSCHHHH-HHHHHHHHTTTCSSHHHHHHHHHHT
T ss_pred HhcCCCC--------CCceEeeeeeeeeHHHHHhcchHHH-HHHHHHhccCcCccCCcCHHHHHHc
Confidence 3445532 334577888864322 12222 123444432 355579988888865
No 2
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=74.66 E-value=1.5 Score=43.01 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=38.9
Q ss_pred cccccccccCC-CCCEEEEEecceEEeeCHHHHHHHHhhccCCeEEEecCCC
Q 008179 346 VPKLLLHRIFP-NVRYSIWIDGKLQLVVDPYQILERFLWRENATFAISRHYR 396 (575)
Q Consensus 346 ipKiLpHrLFP-nyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~fAIskHp~ 396 (575)
+.|++...+|| +++--||+|+-+.+..|+..|.+.=+ ++..+|+..+..
T Consensus 88 ~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl--~~~~~aav~d~~ 137 (276)
T 3tzt_A 88 YYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDI--SDYILAAASHTG 137 (276)
T ss_dssp HHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCC--TTSSEEEEEC--
T ss_pred HHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCC--CCCeEEEEEecc
Confidence 46888999999 69999999999999999998886433 356788876643
No 3
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=29.06 E-value=41 Score=33.16 Aligned_cols=51 Identities=12% Similarity=0.177 Sum_probs=37.3
Q ss_pred eEEEEeccCCCCC---------ccccCccccccccccCCCCCEEEEEecceEEeeCHHHHH
Q 008179 327 WRIIVVRNIPYND---------SRRNGKVPKLLLHRIFPNVRYSIWIDGKLQLVVDPYQIL 378 (575)
Q Consensus 327 WrIV~V~nlpy~D---------~rrngKipKiLpHrLFPnyrYSIWIDgkIqL~~DP~~LL 378 (575)
++++.|+.+...+ ++...-+.|++..++. +|+--||+|+-+.+..|+..|.
T Consensus 57 ~~vi~V~~l~~~~~~~~~~~~rp~~~~~~~kl~~~~l~-~~~~vlylD~D~~v~~~~~~Lf 116 (263)
T 3u2u_A 57 DEVIMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLF 116 (263)
T ss_dssp SEEEECCCCCCCCHHHHHHTTCTTGGGGGGGGGGGGCT-TCSEEEEECTTEEECSCCGGGG
T ss_pred CeEEEeeecCCcchhhhhhhcCcchhHHhHHHHhcccc-CcceEEEEcCCEeeccCHHHHh
Confidence 5677776554322 3334457799988876 6999999999999999976654
No 4
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=26.00 E-value=52 Score=22.28 Aligned_cols=18 Identities=50% Similarity=1.003 Sum_probs=11.4
Q ss_pred CCCCCCCCccCCCCCCCCCC
Q 008179 146 PLHHPCENFAFPPPPPPGLR 165 (575)
Q Consensus 146 ~~~h~c~~f~~~~~p~~~~~ 165 (575)
|.|| +-|++||||-..+.
T Consensus 4 pahh--nmfsvppppi~gr~ 21 (26)
T 2bn5_B 4 PAHH--NMFSVPPPPILGRG 21 (26)
T ss_dssp CCCC--CCCSCCCCSCCCCC
T ss_pred CccC--ceecCCCCCcccCC
Confidence 3355 67999886655443
No 5
>1xv3_A Penaeidin-4D, PEN-4D; antimicrobial peptide, antifungal peptide, cysteine-rich, disulfide bond, oxidative folding, proline- rich, shrimp, antibiotic; NMR {Synthetic}
Probab=25.32 E-value=65 Score=24.93 Aligned_cols=16 Identities=44% Similarity=0.953 Sum_probs=12.1
Q ss_pred CCCCcccc-cCHHHHHh
Q 008179 169 PRPCPVCY-VPVEQAIA 184 (575)
Q Consensus 169 ~~pc~vcy-lp~e~a~~ 184 (575)
|--|..|| |+..||++
T Consensus 20 p~gC~sC~~is~s~Ar~ 36 (47)
T 1xv3_A 20 PIGCDVCYGIPSSTARL 36 (47)
T ss_dssp CSSTTCTTTSCHHHHHH
T ss_pred CcCCccccccCHHHHHH
Confidence 33399998 78888875
No 6
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=20.12 E-value=82 Score=31.73 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=37.1
Q ss_pred eEEEEeccCCCCCc---------cccCccccccccccCCCCCEEEEEecceEEeeCHHHHHH
Q 008179 327 WRIIVVRNIPYNDS---------RRNGKVPKLLLHRIFPNVRYSIWIDGKLQLVVDPYQILE 379 (575)
Q Consensus 327 WrIV~V~nlpy~D~---------rrngKipKiLpHrLFPnyrYSIWIDgkIqL~~DP~~LLe 379 (575)
++|+.|+.+...++ ....-+.|++...| ++|+--||||+-+.+..|+..|.+
T Consensus 56 ~~v~~v~~l~~~~~~~~~~~~~~~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~ 116 (333)
T 1ll2_A 56 DEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFE 116 (333)
T ss_dssp SEEEECCTTSTTSTTHHHHHHCGGGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGG
T ss_pred CEEEEEeecCCcchhhcccccccchHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhC
Confidence 36777765543221 11233568888875 899999999999999999877764
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=18.64 E-value=38 Score=25.79 Aligned_cols=17 Identities=35% Similarity=0.335 Sum_probs=10.7
Q ss_pred hhHHHHHHhhHHhheee
Q 008179 67 VAMLLLVGLPLLIFTLG 83 (575)
Q Consensus 67 ~~~l~l~~~~~~~~~~~ 83 (575)
|++|+++++++++|+|+
T Consensus 19 VGvll~vi~~l~~~~~~ 35 (44)
T 2jwa_A 19 VGILLVVVLGVVFGILI 35 (44)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhe
Confidence 45566666777767663
No 8
>4gqb_C Histone H4 peptide; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=14.65 E-value=58 Score=22.03 Aligned_cols=14 Identities=50% Similarity=0.736 Sum_probs=10.3
Q ss_pred CCCCCccccccccC
Q 008179 554 EKRSGSKRHRKVAA 567 (575)
Q Consensus 554 ~~~~~~~~~~~~~~ 567 (575)
-.+.|.+||||+..
T Consensus 11 lgkggakrhrkv~~ 24 (26)
T 4gqb_C 11 LGKGGAKRHRKVXX 24 (26)
T ss_pred cCccchhhhccccc
Confidence 34567789999864
No 9
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=11.27 E-value=74 Score=21.35 Aligned_cols=21 Identities=24% Similarity=0.146 Sum_probs=14.3
Q ss_pred chhhHHHHHHhhHHhheeeee
Q 008179 65 RRVAMLLLVGLPLLIFTLGSY 85 (575)
Q Consensus 65 ~~~~~l~l~~~~~~~~~~~~~ 85 (575)
+|+.-.+++++++.++||.=|
T Consensus 2 ~k~~k~l~~vv~~F~icW~P~ 22 (33)
T 2ki9_A 2 VRLAKTLGLVLAVLLICWFPV 22 (33)
T ss_dssp CSSSSHHHHHHHHHTTTSSHH
T ss_pred chhhhhHHHHHHHHHHHHhHH
Confidence 455555666777788899755
No 10
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=10.89 E-value=61 Score=22.33 Aligned_cols=16 Identities=13% Similarity=0.384 Sum_probs=9.0
Q ss_pred hHHHHHHhhHHhheee
Q 008179 68 AMLLLVGLPLLIFTLG 83 (575)
Q Consensus 68 ~~l~l~~~~~~~~~~~ 83 (575)
.||+++.++++|.+|.
T Consensus 8 ~lLIviav~aaVllyl 23 (26)
T 3j1r_A 8 LLLILIAVAAAVLLYT 23 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555666665543
Done!