Your job contains 1 sequence.
>008180
MNISEAPEANGSADVHVDPCVMDPQDIALISNNGPAAVSFSSSPCPDGTETSRNPRIDDT
NSKNAGLEDVASVSAASQSDVSRAESRMRKKQEEQKYQGRIMMQQYPSAQQGFQYQVQGV
QGQAVSLGMNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGY
PSQGPVPMPFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHM
QYFQHPFGDAYNASVQHRLASSGVNGALADPSSKKEPIVAAYMGDQNLQSSLNGGPSISN
PRKVGMPVGGYYGGLPGMGVMGQFPTSPIASPVLPSSPVGSTSQLGLRHEMRLPQGLNRN
TGIYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRF
IQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQV
LPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEK
IEFIISAFRGQVATLSTHPYGCRVIQPHNNASGFQ
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008180
(575 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2087560 - symbol:PUM5 "pumilio 5" species:3702... 969 1.5e-97 1
TAIR|locus:2117552 - symbol:PUM6 "pumilio 6" species:3702... 743 1.7e-84 2
TAIR|locus:2043187 - symbol:PUM2 "pumilio 2" species:3702... 737 3.9e-79 3
TAIR|locus:2043182 - symbol:PUM1 "pumilio 1" species:3702... 737 3.2e-75 2
TAIR|locus:2043047 - symbol:PUM3 "pumilio 3" species:3702... 749 3.1e-74 1
TAIR|locus:2076324 - symbol:PUM4 "pumilio 4" species:3702... 651 2.7e-63 1
RGD|1307190 - symbol:Pum1 "pumilio homolog 1 (Drosophila)... 599 1.4e-62 3
FB|FBgn0003165 - symbol:pum "pumilio" species:7227 "Droso... 601 7.3e-62 3
ZFIN|ZDB-GENE-081031-76 - symbol:pum2 "pumilio homolog 2 ... 599 8.4e-62 3
UNIPROTKB|B4E2B6 - symbol:PUM2 "Pumilio homolog 2" specie... 615 1.1e-61 2
UNIPROTKB|E2RT57 - symbol:PUM2 "Uncharacterized protein" ... 615 1.9e-61 2
UNIPROTKB|F1SCU6 - symbol:PUM2 "Uncharacterized protein" ... 615 2.0e-61 2
UNIPROTKB|F1N2B8 - symbol:PUM2 "Uncharacterized protein" ... 615 2.1e-61 2
UNIPROTKB|F1NV23 - symbol:PUM2 "Uncharacterized protein" ... 611 5.3e-61 2
UNIPROTKB|E1BWC0 - symbol:PUM2 "Uncharacterized protein" ... 611 5.3e-61 2
RGD|1311024 - symbol:Pum2 "pumilio homolog 2 (Drosophila)... 602 6.7e-61 2
UNIPROTKB|F1STL2 - symbol:PUM1 "Uncharacterized protein" ... 593 6.9e-61 2
UNIPROTKB|Q8TB72 - symbol:PUM2 "Pumilio homolog 2" specie... 604 3.3e-60 2
MGI|MGI:1931751 - symbol:Pum2 "pumilio 2 (Drosophila)" sp... 603 4.2e-60 2
MGI|MGI:1931749 - symbol:Pum1 "pumilio 1 (Drosophila)" sp... 588 5.0e-60 3
UNIPROTKB|E9PR38 - symbol:PUM1 "Pumilio homolog 1" specie... 593 1.2e-59 2
UNIPROTKB|B4DG92 - symbol:PUM1 "cDNA FLJ56067, highly sim... 593 6.3e-59 2
UNIPROTKB|E1BE82 - symbol:PUM1 "Uncharacterized protein" ... 593 8.8e-59 2
UNIPROTKB|Q14671 - symbol:PUM1 "Pumilio homolog 1" specie... 593 8.8e-59 2
DICTYBASE|DDB_G0279735 - symbol:pufA "RNA binding protein... 578 8.8e-59 2
UNIPROTKB|H0YDK8 - symbol:PUM1 "Pumilio homolog 1" specie... 582 1.1e-58 2
UNIPROTKB|E7EWT3 - symbol:PUM1 "Pumilio homolog 1" specie... 582 5.6e-58 2
ZFIN|ZDB-GENE-030131-2074 - symbol:pum1 "pumilio homolog ... 576 7.4e-58 2
UNIPROTKB|F6XHY4 - symbol:PUM1 "Uncharacterized protein" ... 582 1.2e-57 2
UNIPROTKB|E9PCJ0 - symbol:PUM1 "Pumilio homolog 1" specie... 582 1.4e-57 2
UNIPROTKB|Q5T1Z4 - symbol:PUM1 "Pumilio homolog 1" specie... 582 1.4e-57 2
UNIPROTKB|E2QVA9 - symbol:PUM1 "Uncharacterized protein" ... 582 1.6e-57 2
UNIPROTKB|Q5T1Z8 - symbol:PUM1 "Pumilio homolog 1 (Drosop... 582 1.6e-57 2
UNIPROTKB|Q2VB19 - symbol:PUM1 "Pumilio homolog 1" specie... 581 1.8e-57 2
UNIPROTKB|H0YEH2 - symbol:PUM1 "Pumilio homolog 1" specie... 593 1.0e-56 1
WB|WBGene00004245 - symbol:puf-9 species:6239 "Caenorhabd... 516 1.3e-51 2
SGD|S000003936 - symbol:PUF3 "Protein of the mitochondria... 503 3.8e-51 2
POMBASE|SPAC1687.22c - symbol:puf3 "RNA-binding protein P... 517 1.2e-49 1
CGD|CAL0000998 - symbol:PUF3 species:5476 "Candida albica... 506 7.3e-49 2
UNIPROTKB|H0YC97 - symbol:PUM1 "Pumilio homolog 1" specie... 487 1.8e-46 1
ASPGD|ASPL0000000865 - symbol:AN6587 species:162425 "Emer... 472 9.8e-46 2
WB|WBGene00004244 - symbol:puf-8 species:6239 "Caenorhabd... 371 7.9e-33 1
ASPGD|ASPL0000057098 - symbol:AN10071 species:162425 "Eme... 354 5.3e-30 1
UNIPROTKB|H0YDC5 - symbol:PUM1 "Pumilio homolog 1" specie... 322 1.5e-28 1
TAIR|locus:2015036 - symbol:PUM8 "pumilio 8" species:3702... 301 3.5e-24 1
DICTYBASE|DDB_G0289987 - symbol:DDB_G0289987 "Pumilio hom... 302 1.6e-23 1
POMBASE|SPAC6G9.14 - symbol:SPAC6G9.14 "RNA-binding prote... 298 2.0e-23 1
TAIR|locus:2194699 - symbol:PUM7 "pumilio 7" species:3702... 295 3.8e-23 1
SGD|S000002982 - symbol:PUF4 "Member of the PUF protein f... 292 6.0e-22 2
GENEDB_PFALCIPARUM|PFD0825c - symbol:PFD0825c "RNA-bindin... 276 2.6e-21 1
UNIPROTKB|Q8I1R7 - symbol:PFD0825c "RNA-binding protein o... 276 2.6e-21 1
TAIR|locus:2167111 - symbol:PUM12 "pumilio 12" species:37... 260 2.6e-19 1
DICTYBASE|DDB_G0279557 - symbol:DDB_G0279557 "pumilio RNA... 255 4.6e-19 2
TAIR|locus:2011349 - symbol:PUM9 "pumilio 9" species:3702... 249 3.9e-18 1
SGD|S000003146 - symbol:MPT5 "mRNA-binding protein of the... 250 6.9e-18 1
WB|WBGene00004239 - symbol:puf-3 species:6239 "Caenorhabd... 245 7.9e-18 1
UNIPROTKB|Q9U2G4 - symbol:puf-3 "Protein PUF-3" species:6... 245 7.9e-18 1
WB|WBGene00022257 - symbol:puf-11 species:6239 "Caenorhab... 238 4.9e-17 1
TAIR|locus:2011360 - symbol:PUM10 "pumilio 10" species:37... 233 2.0e-16 1
CGD|CAL0000028 - symbol:MPT5 species:5476 "Candida albica... 233 5.9e-16 1
TAIR|locus:2138258 - symbol:PUM11 "pumilio 11" species:37... 221 4.9e-15 1
WB|WBGene00001402 - symbol:fbf-2 species:6239 "Caenorhabd... 222 4.9e-15 1
POMBASE|SPAC4G8.03c - symbol:SPAC4G8.03c "RNA-binding pro... 222 7.1e-15 1
WB|WBGene00001401 - symbol:fbf-1 species:6239 "Caenorhabd... 216 2.1e-14 1
UNIPROTKB|Q9N5M6 - symbol:fbf-1 "Fem-3 mRNA-binding facto... 216 2.1e-14 1
CGD|CAL0004399 - symbol:orf19.5381 species:5476 "Candida ... 216 8.6e-14 3
POMBASE|SPCC1682.08c - symbol:SPCC1682.08c "RNA-binding p... 196 5.4e-12 2
POMBASE|SPAC4G9.05 - symbol:mpf1 "meiotic PUF family prot... 180 1.8e-10 1
WB|WBGene00004241 - symbol:puf-5 species:6239 "Caenorhabd... 179 2.1e-10 1
WB|WBGene00004243 - symbol:puf-7 species:6239 "Caenorhabd... 174 5.8e-10 1
WB|WBGene00004242 - symbol:puf-6 species:6239 "Caenorhabd... 173 7.5e-10 1
POMBASE|SPBP35G2.14 - symbol:SPBP35G2.14 "RNA-binding pro... 149 2.5e-07 3
WB|WBGene00004240 - symbol:puf-4 species:6239 "Caenorhabd... 96 2.5e-06 2
TAIR|locus:2167771 - symbol:PUM13 "pumilio 13" species:37... 135 1.3e-05 1
UNIPROTKB|H0YDQ6 - symbol:PUM1 "Pumilio homolog 1" specie... 107 3.9e-05 1
TAIR|locus:2086760 - symbol:PUM24 "pumilio 24" species:37... 131 4.7e-05 1
POMBASE|SPBC56F2.08c - symbol:SPBC56F2.08c "RNA-binding p... 129 8.1e-05 1
ASPGD|ASPL0000066087 - symbol:AN7474 species:162425 "Emer... 128 9.1e-05 2
TAIR|locus:2133534 - symbol:PUM15 "pumilio 15" species:37... 126 0.00011 1
CGD|CAL0000283 - symbol:orf19.4262 species:5476 "Candida ... 124 0.00018 1
TAIR|locus:2144010 - symbol:PUM19 "pumilio 19" species:37... 119 0.00033 1
TAIR|locus:2164165 - symbol:PUM18 "pumilio 18" species:37... 118 0.00042 1
DICTYBASE|DDB_G0288551 - symbol:DDB_G0288551 "pumilio RNA... 120 0.00080 1
>TAIR|locus:2087560 [details] [associations]
symbol:PUM5 "pumilio 5" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005773 "vacuole" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005829
GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AP000383 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
EMBL:AK228410 EMBL:BX824276 IPI:IPI00527056 IPI:IPI00972845
RefSeq:NP_188660.3 UniGene:At.38266 ProteinModelPortal:Q9LJX4
SMR:Q9LJX4 STRING:Q9LJX4 PaxDb:Q9LJX4 PRIDE:Q9LJX4
EnsemblPlants:AT3G20250.1 GeneID:821569 KEGG:ath:AT3G20250
TAIR:At3g20250 InParanoid:Q9LJX4 OMA:QHKYASN PhylomeDB:Q9LJX4
Genevestigator:Q9LJX4 Uniprot:Q9LJX4
Length = 961
Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
Identities = 243/538 (45%), Positives = 301/538 (55%)
Query: 49 TETSRNPRIDDTNSKNAGLEXXXXXXXXXXXXXXRAESRMRKKQEEQKYQGRIMMQQYPS 108
+++ N + + N++ A E A SRMR+ QE+Q+ QGR M QY
Sbjct: 274 SQSFTNAQTERLNARQASHEDNNLSVFGASPPSSVA-SRMRRNQEDQQSQGRRMPPQYTP 332
Query: 109 AXXXXXXXXXXXXXXXXSLGMNNAHNAGTYMPSGNPFYPSFQ-PSGAGVYPSQYNVGGYA 167
+ G + + + +G + +FQ P G P + Y
Sbjct: 333 SSYQVQASSPQQMSYPRIGGTQDMMQSLPKIATGE-VHSTFQSPHGLAPPPMYTSTAAYM 391
Query: 168 LN-----------SALFPPFV--AGYP-SQGPVPMPFDATSGSSFNIRTTSVSTGEGIPH 213
+ S +F P GYP + G VP SG + T +
Sbjct: 392 TSLSPFYHQNFQSSGMFVPQYNYGGYPPASGIVPQYM---SGYPSHEATVPMPYDISSTS 448
Query: 214 IGSTQHQKFYGHQGLMLQSP-FVDPLHMQYFQHPFGDAYNASVQHRLASSGVNGALADPS 272
G + G P VDP +QYFQ DAY Q SS D
Sbjct: 449 SGYNNPRLLPGVSSSGQNIPSLVDPFQLQYFQQAQVDAYAPPFQ----SS------TDSF 498
Query: 273 SKKEPIVAAYMGDQN-LQSSLNGGPSISNPRKXXXXXXXXXXXXXXXXXXXQFPTSPIAS 331
+K+ YM + L S L+ G + +PR Q+P SP+AS
Sbjct: 499 GQKDQQAVGYMANHEPLNSPLSPGYGLQSPRHMGNYFAVPPGVRVMP----QYPGSPLAS 554
Query: 332 PVLPSSPVGST-SQLGLRHEMRL-PQGLNRNTGIY-SGWQGQRTFEGQRTFEDSKKHSFL 388
PV+PSSPVG S G R E R QG +RNTGIY GWQG R +D K+HSFL
Sbjct: 555 PVMPSSPVGGMMSHFGRRSETRYHQQGPSRNTGIYPGGWQGNRG-GASSIVDDLKRHSFL 613
Query: 389 EELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLM 448
+ELKS NA+K ELSDIAGR+VEFSVDQHGSRFIQQKLEHCS EEK SVF EVLP ASKLM
Sbjct: 614 DELKSPNARKLELSDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLM 673
Query: 449 TDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQL 508
TDVFGNYVIQKF EHG+P QR+EL ++L GQ++ LSLQMYGCRVIQKALEVI++ QK++L
Sbjct: 674 TDVFGNYVIQKFIEHGTPAQREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTEL 733
Query: 509 VLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ ELDG+V++CVRDQNGNHVIQKCIE +PA +I F+I+AFRGQVATLSTHPYGCRVIQ
Sbjct: 734 IRELDGNVLKCVRDQNGNHVIQKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQ 791
Score = 262 (97.3 bits), Expect = 3.9e-19, P = 3.9e-19
Identities = 54/174 (31%), Positives = 95/174 (54%)
Query: 399 FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS-VFKEVLPHASKLMTDVFGNYVI 457
F ++ G++ S +G R IQ+ LEHCS +E+ + E+L A L D +GNYV
Sbjct: 768 FVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDEILESAFALAHDQYGNYVT 827
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----- 512
Q E G PD+R+++ EKL G V+ +S Y V++K LE + ++ L+ E+
Sbjct: 828 QHVLERGKPDERRQIIEKLTGNVVQMSQHKYASNVVEKCLEHADSTEREFLIEEIMGKSE 887
Query: 513 -DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
D H++ ++DQ N+V+QK +E ++ E ++ + + +L + YG ++
Sbjct: 888 EDNHLLAMMKDQFANYVVQKVLEISKDQQREILVQRMKIHLQSLRKYTYGKHIV 941
Score = 212 (79.7 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 57/182 (31%), Positives = 90/182 (49%)
Query: 387 FLEELKSSNAQKFEL-SDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHAS 445
F+E + AQ+ EL +AG++V S+ +G R IQ+ LE ++K + +E+ +
Sbjct: 685 FIEH--GTPAQREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTELIRELDGNVL 742
Query: 446 KLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQK 505
K + D GN+VIQK E + + GQV LS YGCRVIQ+ LE ++
Sbjct: 743 KCVRDQNGNHVIQKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDEE 802
Query: 506 SQLVL-ELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRV 564
+ ++ E+ DQ GN+V Q +E ++ II G V +S H Y V
Sbjct: 803 THCIIDEILESAFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQMSQHKYASNV 862
Query: 565 IQ 566
++
Sbjct: 863 VE 864
Score = 141 (54.7 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 52/193 (26%), Positives = 80/193 (41%)
Query: 375 GQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV 434
G R + +H EE A F S++ + + D G+ IQ+ +EH + ++
Sbjct: 642 GSRFIQQKLEHCSDEE----KASVF--SEVLPQASKLMTDVFGNYVIQKFIEHGTPAQRE 695
Query: 435 SVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQ 494
+ K++ L ++G VIQK E DQ+ EL +L G VL G VIQ
Sbjct: 696 ELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTELIRELDGNVLKCVRDQNGNHVIQ 755
Query: 495 KALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQVA 553
K +E + + ++ G V G VIQ+ +E C E+ II
Sbjct: 756 KCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDEILESAF 815
Query: 554 TLSTHPYGCRVIQ 566
L+ YG V Q
Sbjct: 816 ALAHDQYGNYVTQ 828
>TAIR|locus:2117552 [details] [associations]
symbol:PUM6 "pumilio 6" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AL049480 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 EMBL:AF360298 EMBL:AY133866 EMBL:AK318840
EMBL:AK319148 IPI:IPI00518278 IPI:IPI00520481 IPI:IPI00656838
IPI:IPI00972816 PIR:T04242 RefSeq:NP_001031720.1 RefSeq:NP_567733.1
RefSeq:NP_974618.2 UniGene:At.21892 UniGene:At.28428
ProteinModelPortal:Q9C5E7 SMR:Q9C5E7 STRING:Q9C5E7 PaxDb:Q9C5E7
PRIDE:Q9C5E7 EnsemblPlants:AT4G25880.1 GeneID:828694
KEGG:ath:AT4G25880 TAIR:At4g25880 InParanoid:Q9C5E7 OMA:MEGSFLA
PhylomeDB:Q9C5E7 ProtClustDB:CLSN2689613 Genevestigator:Q9C5E7
Uniprot:Q9C5E7
Length = 861
Score = 743 (266.6 bits), Expect = 1.7e-84, Sum P(2) = 1.7e-84
Identities = 141/203 (69%), Positives = 168/203 (82%)
Query: 364 YSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQ 423
Y GWQ Q + EG + +FLEELKS ++F+LSDI G IVEFS DQHGSRFIQQ
Sbjct: 496 YPGWQPQGSLEGAN---GPRLCNFLEELKSGKGRRFDLSDITGHIVEFSADQHGSRFIQQ 552
Query: 424 KLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPL 483
KLE+C EEK +VF+E+LPHA KLMTDVFGNYVIQKFFE+G+ QRKELA++L+GQ++PL
Sbjct: 553 KLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQKFFEYGNSTQRKELADQLMGQIVPL 612
Query: 484 SLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEF 543
SLQMYGCRVIQKAL+VIE Q+ +L ELDG VMRCVRDQNGNHVIQKCIE +PA+K+ F
Sbjct: 613 SLQMYGCRVIQKALDVIEPDQRVRLARELDGQVMRCVRDQNGNHVIQKCIENIPADKVGF 672
Query: 544 IISAFRGQVATLSTHPYGCRVIQ 566
++ AFRGQV++LS HPYGCRVIQ
Sbjct: 673 MLYAFRGQVSSLSMHPYGCRVIQ 695
Score = 224 (83.9 bits), Expect = 7.5e-23, Sum P(2) = 7.5e-23
Identities = 58/207 (28%), Positives = 104/207 (50%)
Query: 371 RTFEGQ--RTFEDSKKHSFLEE-LKSSNAQK--FELSDIAGRIVEFSVDQHGSRFIQQKL 425
R +GQ R D + +++ +++ A K F L G++ S+ +G R IQ+ L
Sbjct: 639 RELDGQVMRCVRDQNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLL 698
Query: 426 EHCSAEEKVS-VFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLS 484
E CS + + + +E+L L D +GNYV Q E G+ ++R+ + KL G ++ LS
Sbjct: 699 ERCSHDHQCRFITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLS 758
Query: 485 LQMYGCRVIQKALEVIELHQKSQLVLELDG------HVMRCVRDQNGNHVIQKCIECVPA 538
L + VI+K LE ++ ++ E+ G ++ ++DQ GN+V+QK E A
Sbjct: 759 LHKFASNVIEKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTA 818
Query: 539 EKIEFIISAFRGQVATLSTHPYGCRVI 565
++ + S R + L + YG ++
Sbjct: 819 DQRLTLFSRVRMHASALKKYTYGKHIV 845
Score = 213 (80.0 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 58/175 (33%), Positives = 92/175 (52%)
Query: 394 SNAQKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVF 452
++ Q+ EL+D + G+IV S+ +G R IQ+ L+ +++V + +E+ + + D
Sbjct: 594 NSTQRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRVRLARELDGQVMRCVRDQN 653
Query: 453 GNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIEL-HQKSQLVLE 511
GN+VIQK E+ D+ + GQV LS+ YGCRVIQ+ LE HQ + E
Sbjct: 654 GNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDHQCRFITEE 713
Query: 512 LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ V +DQ GN+V Q +E +E+ E I G + LS H + VI+
Sbjct: 714 ILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLHKFASNVIE 768
Score = 144 (55.7 bits), Expect = 5.0e-14, Sum P(2) = 5.0e-14
Identities = 46/165 (27%), Positives = 71/165 (43%)
Query: 403 DIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFE 462
+I + D G+ IQ+ E+ ++ ++ + +++ L ++G VIQK +
Sbjct: 568 EILPHACKLMTDVFGNYVIQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQKALD 627
Query: 463 HGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRD 522
PDQR LA +L GQV+ G VIQK +E I + ++ G V
Sbjct: 628 VIEPDQRVRLARELDGQVMRCVRDQNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMH 687
Query: 523 QNGNHVIQKCIE-CVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
G VIQ+ +E C + FI V LS YG V Q
Sbjct: 688 PYGCRVIQRLLERCSHDHQCRFITEEILESVCVLSKDQYGNYVTQ 732
Score = 124 (48.7 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 37/150 (24%), Positives = 67/150 (44%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
LE + +F +I + S DQ+G+ Q LE ++EE+ + +++ H +L
Sbjct: 698 LERCSHDHQCRFITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQL 757
Query: 448 MTDVFGNYVIQKFFEHGSPDQR----KELA--EKLVGQVLPLSLQMYGCRVIQKALEVIE 501
F + VI+K E+G +R KE+A ++ +L + YG V+QK E
Sbjct: 758 SLHKFASNVIEKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCT 817
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQK 531
Q+ L + H + G H++ +
Sbjct: 818 ADQRLTLFSRVRMHASALKKYTYGKHIVSR 847
Score = 122 (48.0 bits), Expect = 1.7e-84, Sum P(2) = 1.7e-84
Identities = 40/112 (35%), Positives = 51/112 (45%)
Query: 138 YMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPMPFDATSGSS 197
YM S Y P+ VY QY G Y N + P F+ GYPS G VP+
Sbjct: 322 YMTSPAHVYNMQSPA---VYSPQYGYGPYT-N--MIPQFMPGYPSHGSVPV----VVSPD 371
Query: 198 FNIRTTSVSTGEGIPHIGSTQH-QKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
F + + S G + H G Q+ +K Y G Q F DP++MQY Q FG
Sbjct: 372 FIPQLSGPSAGS-VVHGGEMQYAEKLYVPPG---QPSFPDPMYMQYCQQSFG 419
Score = 121 (47.7 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 33/111 (29%), Positives = 56/111 (50%)
Query: 404 IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-PHAS-----KLMTDVFGNYVI 457
++G IV+ S+ + S I++ LE+ E+ + KE+ P S +M D +GNYV+
Sbjct: 750 LSGHIVQLSLHKFASNVIEKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVV 809
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQL 508
QK FE + DQR L ++ L YG ++ + LE + + +L
Sbjct: 810 QKIFETCTADQRLTLFSRVRMHASALKKYTYGKHIVSR-LEQPSIEENQEL 859
>TAIR|locus:2043187 [details] [associations]
symbol:PUM2 "pumilio 2" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS;IDA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005829 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003730 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 ProtClustDB:CLSN2717398 InterPro:IPR012940
Pfam:PF07990 EMBL:AY096653 EMBL:AK226635 IPI:IPI00539996 PIR:E84693
RefSeq:NP_001189630.1 RefSeq:NP_180482.1 UniGene:At.28148
UniGene:At.48528 ProteinModelPortal:Q9ZW06 SMR:Q9ZW06 STRING:Q9ZW06
PaxDb:Q9ZW06 PRIDE:Q9ZW06 ProMEX:Q9ZW06 EnsemblPlants:AT2G29190.1
EnsemblPlants:AT2G29190.2 GeneID:817468 KEGG:ath:AT2G29190
TAIR:At2g29190 InParanoid:Q9ZW06 OMA:LAANCED PhylomeDB:Q9ZW06
Genevestigator:Q9ZW06 Uniprot:Q9ZW06
Length = 972
Score = 737 (264.5 bits), Expect = 3.9e-79, Sum P(3) = 3.9e-79
Identities = 150/245 (61%), Positives = 181/245 (73%)
Query: 324 FPTSPIASPVLPSSPVGSTSQLGLRHE--MRLPQGLNRNTGIYSGWQGQRTFEGQRTFED 381
+P SP+A +LP+S V S + R E MR P G G G ++ + ++
Sbjct: 559 YPGSPLAHHLLPNSLVSPCSPMR-RGEVNMRYPSATRNYAG---GVMG--SWHMDASLDE 612
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S LEE KS+ + FEL++IAG +VEFS DQ+GSRFIQQKLE +++EK V++E++
Sbjct: 613 GFGSSMLEEFKSNKTRGFELAEIAGHVVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIM 672
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
PHA LMTDVFGNYVIQKFFEHG P QR+ELA+KL VLPLSLQMYGCRVIQKA+EV++
Sbjct: 673 PHALALMTDVFGNYVIQKFFEHGLPPQRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVD 732
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
L QK ++V ELDGHVMRCVRDQNGNHV+QKCIECVP E IEFIIS F G V TLSTHPYG
Sbjct: 733 LDQKIKMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGNVVTLSTHPYG 792
Query: 562 CRVIQ 566
CRVIQ
Sbjct: 793 CRVIQ 797
Score = 235 (87.8 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 54/175 (30%), Positives = 91/175 (52%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS-VFKEVLPHASKLMTDVFGNYV 456
+F +S G +V S +G R IQ+ LEHC + S V E++ S L D +GNYV
Sbjct: 773 EFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMDEIMSTISMLAQDQYGNYV 832
Query: 457 IQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH- 515
IQ EHG PD+R + ++L G+++ +S Q + V++K L ++ LV E+ G
Sbjct: 833 IQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEEREFLVNEMLGTT 892
Query: 516 -----VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
+ ++DQ N+V+QK +E ++ E I+ + + L + YG ++
Sbjct: 893 DENEPLQAMMKDQFANYVVQKVLETCDDQQRELILGRIKVHLNALKKYTYGKHIV 947
Score = 207 (77.9 bits), Expect = 4.3e-13, Sum P(3) = 4.3e-13
Identities = 51/173 (29%), Positives = 92/173 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
Q+ EL+D + ++ S+ +G R IQ+ +E ++K+ + KE+ H + + D GN+
Sbjct: 699 QRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNH 758
Query: 456 VIQKFFEHGSPDQRKE-LAEKLVGQVLPLSLQMYGCRVIQKALEVI-ELHQKSQLVLELD 513
V+QK E P++ E + G V+ LS YGCRVIQ+ LE + +S+++ E+
Sbjct: 759 VVQKCIEC-VPEENIEFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMDEIM 817
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ +DQ GN+VIQ +E ++ II G++ +S + V++
Sbjct: 818 STISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVE 870
Score = 142 (55.0 bits), Expect = 5.0e-06, Sum P(3) = 5.0e-06
Identities = 38/157 (24%), Positives = 72/157 (45%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
LE + Q + +I I + DQ+G+ IQ LEH +E+ + KE+ ++
Sbjct: 800 LEHCHDPDTQSKVMDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQM 859
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQV---LPLSLQM---YGCRVIQKALEVIE 501
F + V++K G P++R+ L +++G PL M + V+QK LE +
Sbjct: 860 SQQKFASNVVEKCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCD 919
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPA 538
Q+ ++ + H+ + G H++ + + V A
Sbjct: 920 DQQRELILGRIKVHLNALKKYTYGKHIVARVEKLVAA 956
Score = 48 (22.0 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 13/66 (19%), Positives = 32/66 (48%)
Query: 348 RHEMRLPQGLNRNTGIYSGWQGQRTFEGQRT-------FEDSKKHSFLEELKSSNAQKFE 400
R ++R+ Q L ++ + G +R ++ F+ K+H F E S+++ +++
Sbjct: 125 REDLRVAQRLKGSSNVLGGVGDRRKVNDSQSLFSMPPGFDQRKQHEFEVEKTSASSSEWD 184
Query: 401 LSDIAG 406
+ + G
Sbjct: 185 ANGLIG 190
Score = 47 (21.6 bits), Expect = 3.9e-79, Sum P(3) = 3.9e-79
Identities = 24/93 (25%), Positives = 38/93 (40%)
Query: 161 YNVGGYALNSALFPPFV--AGYPSQGPVPMPFDATSGSSFNIRTTS------VSTGEGIP 212
Y + Y LN A+ G + PV A S F+ + VS+G+ +
Sbjct: 407 YCLNNYGLNPAVASMMANQLGTNNYSPVYENASAASAMGFSGMDSRLHGGGYVSSGQNLS 466
Query: 213 ---HIGSTQHQKFYGHQGLMLQSPFVDPLHMQY 242
++G ++ G GL QS DP++ QY
Sbjct: 467 ESRNLGRFSNRMMGGGTGL--QSHMADPMYHQY 497
Score = 43 (20.2 bits), Expect = 3.9e-79, Sum P(3) = 3.9e-79
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 30 ISNNG---PAAVSFSSSPC--PDGT-ETSRNPRIDDTNSK--NAGL 67
+S NG P A++ SPC P G+ S N + + +N N GL
Sbjct: 264 LSRNGTPDPQAIARVPSPCLTPIGSGRVSSNDKRNTSNQSPFNGGL 309
Score = 43 (20.2 bits), Expect = 4.4e-78, Sum P(3) = 4.4e-78
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 182 SQGPVPMP--FDATSGSSFNIRTTSVSTGE-------GIPHIGSTQHQKFY 223
SQ MP FD F + TS S+ E G+P +G QK +
Sbjct: 153 SQSLFSMPPGFDQRKQHEFEVEKTSASSSEWDANGLIGLPGLGIGGKQKSF 203
Score = 37 (18.1 bits), Expect = 4.4e-78, Sum P(3) = 4.4e-78
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 280 AAYMGDQNLQSSLNGGPSISN 300
A+ MG + S L+GG +S+
Sbjct: 441 ASAMGFSGMDSRLHGGGYVSS 461
>TAIR|locus:2043182 [details] [associations]
symbol:PUM1 "pumilio 1" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
IPI:IPI00536716 PIR:F84693 RefSeq:NP_180483.1 UniGene:At.38509
ProteinModelPortal:Q9ZW07 SMR:Q9ZW07 STRING:Q9ZW07 PaxDb:Q9ZW07
PRIDE:Q9ZW07 EnsemblPlants:AT2G29200.1 GeneID:817469
KEGG:ath:AT2G29200 TAIR:At2g29200 HOGENOM:HOG000238460
InParanoid:Q9ZW07 OMA:DQAHKAT PhylomeDB:Q9ZW07
ProtClustDB:CLSN2717398 Genevestigator:Q9ZW07 InterPro:IPR012940
Pfam:PF07990 Uniprot:Q9ZW07
Length = 968
Score = 737 (264.5 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
Identities = 163/304 (53%), Positives = 197/304 (64%)
Query: 268 LADPSSKKEPIV-AAYMGDQNLQSSLNGGPSISN--PRKXXXXXXXXXXXXXXXXXXXQF 324
L DPS + + ++YM LQ + G P K +
Sbjct: 496 LNDPSMDRNFMGGSSYMDMLELQRAYLGAQKSQYGVPYKSGSPNSHSYYGSPTFGSNMSY 555
Query: 325 PTSPIASPVLPSSPVGSTSQLGLRHE--MRLPQGLNRNTGIYSGWQGQRTFEGQRTFEDS 382
P SP+A +P+S + S + R E MR P RN YSG ++ +F++
Sbjct: 556 PGSPLAHHGMPNSLMSPYSPMR-RDEVNMRFPSA-TRN---YSGGL-MGSWHMDASFDEG 609
Query: 383 KKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLP 442
S LEE KS+ + FELS+IAG +VEFS DQ+GSRFIQQKLE + +EK V++E++P
Sbjct: 610 FGSSMLEEFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMP 669
Query: 443 HASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIEL 502
A LMTDVFGNYVIQKFFEHG P QR+ELAEKL VLPLSLQMYGCRVIQKA+EV++L
Sbjct: 670 QALVLMTDVFGNYVIQKFFEHGLPPQRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDL 729
Query: 503 HQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGC 562
QK ++V ELDGHVMRCVRDQNGNHV+QKCIECVP E IEFIIS F G V TLSTHPYGC
Sbjct: 730 DQKIKMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGC 789
Query: 563 RVIQ 566
RVIQ
Sbjct: 790 RVIQ 793
Score = 244 (91.0 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 55/175 (31%), Positives = 93/175 (53%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS-VFKEVLPHASKLMTDVFGNYV 456
+F +S G +V S +G R IQ+ LEHC + S V +E+L S L D +GNYV
Sbjct: 769 EFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMEEILSTVSMLAQDQYGNYV 828
Query: 457 IQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH- 515
+Q EHG PD+R + ++L G+++ +S Q + V++K L ++ LV E+ G
Sbjct: 829 VQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTT 888
Query: 516 -----VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
+ ++DQ N+V+QK +E ++ E I++ + + L + YG V+
Sbjct: 889 DENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHLTALKKYTYGKHVV 943
Score = 203 (76.5 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 50/173 (28%), Positives = 92/173 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
Q+ EL++ + ++ S+ +G R IQ+ +E ++K+ + KE+ H + + D GN+
Sbjct: 695 QRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNH 754
Query: 456 VIQKFFEHGSPDQRKE-LAEKLVGQVLPLSLQMYGCRVIQKALEVI-ELHQKSQLVLELD 513
V+QK E P++ E + G V+ LS YGCRVIQ+ LE + +S+++ E+
Sbjct: 755 VVQKCIEC-VPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMEEIL 813
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
V +DQ GN+V+Q +E ++ II G++ +S + V++
Sbjct: 814 STVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVE 866
Score = 146 (56.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 102/445 (22%), Positives = 167/445 (37%)
Query: 131 NAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPMPF 190
+A+N G + NP+ P+ Y + YALN A+ + PM +
Sbjct: 382 SAYNGGVGL--ANPYQQLDSPN--------YCLNNYALNPAVASMMANQLGNNNFAPM-Y 430
Query: 191 DATSGSSFNIRTTS------VSTGEGIP---HIGSTQHQKFYGHQGLMLQSPFVDPLHMQ 241
D S F+ + VS+G+ + ++G ++ G GL QS VDP++ Q
Sbjct: 431 DNVSALGFSGMDSRHHGRGFVSSGQNLSESRNLGRFSNRMMGGGAGL--QSHMVDPMYNQ 488
Query: 242 YFQHPFGDAYNASVQHRLASSGVNGALADPSSKKEPIVAAYMGDQNLQSSLNGGPSISNP 301
Y D N R G + D + AY+G Q Q + P
Sbjct: 489 YADSL--DLLNDPSMDRNFMGG--SSYMDMLELQR----AYLGAQKSQYGV--------P 532
Query: 302 RKXXXXXXXXXXXXXXXXXXXQFPTSPIASPVLPSSPVGSTSQLGLRH-EMRLPQGL-NR 359
K +P SP+A +P+S + S + MR P N
Sbjct: 533 YKSGSPNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSLMSPYSPMRRDEVNMRFPSATRNY 592
Query: 360 NTGIYSGWQGQRTF-EG-----QRTFEDSKKHSF-LEELK------SSNA-------QKF 399
+ G+ W +F EG F+ +K F L E+ SS+ QK
Sbjct: 593 SGGLMGSWHMDASFDEGFGSSMLEEFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKL 652
Query: 400 ELS----------DIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMT 449
E + +I + + D G+ IQ+ EH ++ + +++ H L
Sbjct: 653 ETATTDEKNMVYEEIMPQALVLMTDVFGNYVIQKFFEHGLPPQRRELAEKLFDHVLPLSL 712
Query: 450 DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 509
++G VIQK E DQ+ ++ ++L G V+ G V+QK +E + ++
Sbjct: 713 QMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFII 772
Query: 510 LELDGHVMRCVRDQNGNHVIQKCIE 534
GHV+ G VIQ+ +E
Sbjct: 773 STFFGHVVTLSTHPYGCRVIQRVLE 797
Score = 145 (56.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 37/157 (23%), Positives = 72/157 (45%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
LE + Q + +I + + DQ+G+ +Q LEH +E+ + KE+ ++
Sbjct: 796 LEHCHDPDTQSKVMEEILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQM 855
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQV---LPLSLQM---YGCRVIQKALEVIE 501
F + V++K G P++R+ L +++G PL M + V+QK LE +
Sbjct: 856 SQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCD 915
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPA 538
Q+ ++ + H+ + G HV+ + + V A
Sbjct: 916 DQQRELILTRIKVHLTALKKYTYGKHVVARIEKLVAA 952
Score = 40 (19.1 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 30 ISNNG---PAAVSFSSSPCPDGTETSRNPRIDDTNSKN 64
+S NG P A++ SPC + R D N+ N
Sbjct: 256 LSRNGTPDPQAIARVPSPCLTPIGSGRMSSNDKRNTSN 293
>TAIR|locus:2043047 [details] [associations]
symbol:PUM3 "pumilio 3" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005886 GO:GO:0005737
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
ProtClustDB:CLSN2717398 InterPro:IPR012940 Pfam:PF07990
IPI:IPI00542656 PIR:A84693 RefSeq:NP_180478.1 UniGene:At.46280
ProteinModelPortal:Q9ZW02 SMR:Q9ZW02 PaxDb:Q9ZW02 PRIDE:Q9ZW02
EnsemblPlants:AT2G29140.1 GeneID:817463 KEGG:ath:AT2G29140
TAIR:At2g29140 InParanoid:Q9ZW02 OMA:MYENASA PhylomeDB:Q9ZW02
Genevestigator:Q9ZW02 Uniprot:Q9ZW02
Length = 964
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 186/427 (43%), Positives = 240/427 (56%)
Query: 152 SGAGVY-PSQYNVGG--YALNSALFPPFVAGYPSQGPVPMPFDATSGSSFNIRTTSVSTG 208
SG+GV P Q++ YALN A+ + PM +A++ ++ + + G
Sbjct: 381 SGSGVANPYQHHDSPNYYALNPAVASMMANQLGTNNYSPMYENASATLGYSAMDSRLHGG 440
Query: 209 EGIPHIGSTQHQKFYGHQG-LMLQ------SPFVDPLHMQYFQHPFGDAYNASVQHRLAS 261
+ + + G G M++ S DP++ QY + F + NA L
Sbjct: 441 SFVSSGQNLSESRNIGRVGNRMMEGGTGHPSHLADPMYHQYAR--FSE--NADSFDLLND 496
Query: 262 SGVNGALADPSSKKEPIVAAYMGDQNLQSSLNGGPSISNPRKXXXXXXXXXXXXXXXXXX 321
++ + I AY+G Q Q L P K
Sbjct: 497 PSMDRNYGNSYMNMLEIQRAYLGSQKSQYGL--------PYKSGSPNSHSYYGSPTFGSN 548
Query: 322 XQFPTSPIASPVLPSSPVGSTSQLGLRHE--MRLPQGLNRNTGIYSGWQGQRTFEGQRTF 379
+P SP+A +P+S + S + R E MR P TG G G ++ +
Sbjct: 549 MSYPGSPLAHHGMPNSLMSPYSPMR-RGEVNMRYPAATRNYTG---GVMG--SWHMDASL 602
Query: 380 EDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKE 439
++ S LEE KS+ + FELS+IAG +VEFS DQ+GSRFIQQKLE + +EK V++E
Sbjct: 603 DEGFGSSMLEEFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEE 662
Query: 440 VLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEV 499
++P A LMTDVFGNYVIQKFFEHG P QR+EL EKL+ VLPLSLQMYGCRVIQKA+EV
Sbjct: 663 IMPKALALMTDVFGNYVIQKFFEHGLPPQRRELGEKLIDNVLPLSLQMYGCRVIQKAIEV 722
Query: 500 IELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
++L QK Q+V ELDGHVMRCVRDQNGNHV+QKCIECVP E IEFIIS F G V TLSTHP
Sbjct: 723 VDLDQKIQMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHP 782
Query: 560 YGCRVIQ 566
YGCRVIQ
Sbjct: 783 YGCRVIQ 789
Score = 242 (90.2 bits), Expect = 6.3e-17, P = 6.3e-17
Identities = 53/175 (30%), Positives = 94/175 (53%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHC-SAEEKVSVFKEVLPHASKLMTDVFGNYV 456
+F +S G +V S +G R IQ+ LEHC + + + V +E+L S L D +GNYV
Sbjct: 765 EFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQSKVMEEILSTVSMLTQDQYGNYV 824
Query: 457 IQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH- 515
+Q EHG PD+R + ++L G+++ +S Q + V++K L ++ LV E+ G
Sbjct: 825 VQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTT 884
Query: 516 -----VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
+ ++DQ N+V+QK +E ++ E I++ + + L + YG ++
Sbjct: 885 DENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHLNALKKYTYGKHIV 939
Score = 204 (76.9 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 104/448 (23%), Positives = 183/448 (40%)
Query: 148 SFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPMPFD----ATSGSSFNI-RT 202
SF SG + S+ N+G N + G+PS PM + + SF++
Sbjct: 441 SFVSSGQNLSESR-NIGRVG-NRMMEGG--TGHPSHLADPMYHQYARFSENADSFDLLND 496
Query: 203 TSVSTGEGIPHIGSTQHQKFY-GHQGLMLQSPFVD--PLHMQYFQHP-FGDAYNASVQHR 258
S+ G ++ + Q+ Y G Q P+ P Y+ P FG N S
Sbjct: 497 PSMDRNYGNSYMNMLEIQRAYLGSQKSQYGLPYKSGSPNSHSYYGSPTFGS--NMSYPGS 554
Query: 259 -LASSGVNGALADPSS--KKEPIVAAY-----------MGDQNLQSSLNGGPSISNPRKX 304
LA G+ +L P S ++ + Y MG ++ +SL+ G S +
Sbjct: 555 PLAHHGMPNSLMSPYSPMRRGEVNMRYPAATRNYTGGVMGSWHMDASLDEGFGSSMLEEF 614
Query: 305 XXXXXXXXXXXXXXXXXXQFPTSPIASPVLPSS-PVGSTSQLGLRHEMRLPQGLNRNTGI 363
+F + S + +T + + +E +P+ L T +
Sbjct: 615 KSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDV 674
Query: 364 YSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSD-IAGRIVEFSVDQHGSRFIQ 422
+ + Q+ FE H Q+ EL + + ++ S+ +G R IQ
Sbjct: 675 FGNYVIQKFFE----------HGL-------PPQRRELGEKLIDNVLPLSLQMYGCRVIQ 717
Query: 423 QKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKE-LAEKLVGQVL 481
+ +E ++K+ + KE+ H + + D GN+V+QK E P++ E + G V+
Sbjct: 718 KAIEVVDLDQKIQMVKELDGHVMRCVRDQNGNHVVQKCIEC-VPEENIEFIISTFFGHVV 776
Query: 482 PLSLQMYGCRVIQKALEVIELHQ---KSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPA 538
LS YGCRVIQ+ LE H +S+++ E+ V +DQ GN+V+Q +E
Sbjct: 777 TLSTHPYGCRVIQRVLE--HCHNPDTQSKVMEEILSTVSMLTQDQYGNYVVQHVLEHGKP 834
Query: 539 EKIEFIISAFRGQVATLSTHPYGCRVIQ 566
++ II G++ +S + V++
Sbjct: 835 DERTVIIKELAGKIVQMSQQKFASNVVE 862
Score = 144 (55.7 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 36/157 (22%), Positives = 73/157 (46%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
LE + + Q + +I + + DQ+G+ +Q LEH +E+ + KE+ ++
Sbjct: 792 LEHCHNPDTQSKVMEEILSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQM 851
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQV---LPLSLQM---YGCRVIQKALEVIE 501
F + V++K G P++R+ L +++G PL M + V+QK LE +
Sbjct: 852 SQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCD 911
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPA 538
Q+ ++ + H+ + G H++ + + V A
Sbjct: 912 DQQRELILTRIKVHLNALKKYTYGKHIVARVEKLVAA 948
>TAIR|locus:2076324 [details] [associations]
symbol:PUM4 "pumilio 4" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729 EMBL:AC009400
eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460 InterPro:IPR012940
Pfam:PF07990 EMBL:AK117911 EMBL:BT005311 IPI:IPI00525853
RefSeq:NP_187647.2 UniGene:At.27627 UniGene:At.48643
ProteinModelPortal:Q9SS47 SMR:Q9SS47 PaxDb:Q9SS47 PRIDE:Q9SS47
EnsemblPlants:AT3G10360.1 GeneID:820198 KEGG:ath:AT3G10360
TAIR:At3g10360 InParanoid:Q9SS47 OMA:FKNNKTR PhylomeDB:Q9SS47
Genevestigator:Q9SS47 Uniprot:Q9SS47
Length = 1003
Score = 651 (234.2 bits), Expect = 2.7e-63, P = 2.7e-63
Identities = 130/216 (60%), Positives = 161/216 (74%)
Query: 351 MRLPQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVE 410
MR+ Q + + G QG + T E S LE K++ + ELS+I G ++E
Sbjct: 616 MRMSQSASMMKVPFGGLQGSSHVDIGSTAEAS----LLEGFKNNKTRSLELSEIVGHVIE 671
Query: 411 FSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRK 470
FS+DQ+GSRFIQQKLE + EEK ++F E+LP+ LMTDVFGNYVIQKFFEHG+ QRK
Sbjct: 672 FSMDQYGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKFFEHGTTKQRK 731
Query: 471 ELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQ 530
ELAE++ G VL LSLQMYGCRVIQKALEV+EL Q++++V ELDG VM+CV DQNGNHVIQ
Sbjct: 732 ELAEQVTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNHVIQ 791
Query: 531 KCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
KCIE +P + I+FIIS+F G+V LSTHPYGCRVIQ
Sbjct: 792 KCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQ 827
Score = 236 (88.1 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 51/175 (29%), Positives = 91/175 (52%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCS-AEEKVSVFKEVLPHASKLMTDVFGNYV 456
+F +S G+++ S +G R IQ+ LEH E + + +E++ L D +GNYV
Sbjct: 803 QFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDSVCTLAQDQYGNYV 862
Query: 457 IQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH- 515
IQ +HG P +R E+ KL GQ++ +S Q + V++K L ++ LV E+ G+
Sbjct: 863 IQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNVVEKCLTFGGPEERQVLVNEMLGYT 922
Query: 516 -----VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
+ ++D GN+V+QK +E + + I+S + + L + YG ++
Sbjct: 923 DENEPLQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLNALKRYTYGKHIV 977
Score = 227 (85.0 bits), Expect = 3.0e-15, P = 3.0e-15
Identities = 58/173 (33%), Positives = 94/173 (54%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
Q+ EL++ + G ++ S+ +G R IQ+ LE E++ + KE+ K + D GN+
Sbjct: 729 QRKELAEQVTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNH 788
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-LDG 514
VIQK E D + + G+VL LS YGCRVIQ+ LE I+ + ++++E +
Sbjct: 789 VIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMD 848
Query: 515 HVMRCVRDQNGNHVIQKCIEC-VPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
V +DQ GN+VIQ I+ P E+ E II+ GQ+ +S + V++
Sbjct: 849 SVCTLAQDQYGNYVIQHIIQHGKPHERSE-IINKLAGQIVKMSQQKFASNVVE 900
Score = 136 (52.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 33/150 (22%), Positives = 68/150 (45%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
LE + Q+ + +I + + DQ+G+ IQ ++H E+ + ++ K+
Sbjct: 830 LEHIDDIETQRIIMEEIMDSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKM 889
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQV---LPLSLQM---YGCRVIQKALEVIE 501
F + V++K G P++R+ L +++G PL M +G V+QK LE +
Sbjct: 890 SQQKFASNVVEKCLTFGGPEERQVLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVLETCD 949
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQK 531
+ ++ + H+ R G H++ +
Sbjct: 950 DQSLALILSRIKVHLNALKRYTYGKHIVAR 979
Score = 135 (52.6 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 42/154 (27%), Positives = 69/154 (44%)
Query: 414 DQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELA 473
D G+ IQ+ EH + +++ + ++V H L ++G VIQK E +Q+ +
Sbjct: 711 DVFGNYVIQKFFEHGTTKQRKELAEQVTGHVLALSLQMYGCRVIQKALEVVELEQQARMV 770
Query: 474 EKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCI 533
++L G V+ G VIQK +E + ++ G V+ G VIQ+ +
Sbjct: 771 KELDGSVMKCVHDQNGNHVIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVL 830
Query: 534 ECVP-AEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
E + E I+ V TL+ YG VIQ
Sbjct: 831 EHIDDIETQRIIMEEIMDSVCTLAQDQYGNYVIQ 864
>RGD|1307190 [details] [associations]
symbol:Pum1 "pumilio homolog 1 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 RGD:1307190 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 IPI:IPI00776810
Ensembl:ENSRNOT00000056233 UCSC:RGD:1307190 ArrayExpress:D3ZHQ4
Uniprot:D3ZHQ4
Length = 944
Score = 599 (215.9 bits), Expect = 1.4e-62, Sum P(3) = 1.4e-62
Identities = 114/185 (61%), Positives = 143/185 (77%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE +A E+ VF E+L
Sbjct: 585 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEIL 644
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 645 QAAYQLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 704
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 705 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 764
Query: 562 CRVIQ 566
CRVIQ
Sbjct: 765 CRVIQ 769
Score = 251 (93.4 bits), Expect = 8.4e-18, Sum P(3) = 8.4e-18
Identities = 59/174 (33%), Positives = 93/174 (53%)
Query: 394 SNAQKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVF 452
S+ QK L++ I G ++ ++ +G R IQ+ LE ++++ + +E+ H K + D
Sbjct: 668 SHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQN 727
Query: 453 GNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL 512
GN+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 728 GNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEEL 787
Query: 513 DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
H + V+DQ GN+VIQ +E E I++ RG V LS H + V++
Sbjct: 788 HQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 841
Score = 235 (87.8 bits), Expect = 5.6e-16, Sum P(3) = 5.6e-16
Identities = 50/175 (28%), Positives = 94/175 (53%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC ++ + + +E+ H +L+ D +GNYVI
Sbjct: 745 QFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVI 804
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G VL LS + V++K + +++ L+ E+ D
Sbjct: 805 QHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMND 864
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ + + ++ R +ATL + YG ++
Sbjct: 865 GPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 919
Score = 148 (57.2 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 44/171 (25%), Positives = 80/171 (46%)
Query: 390 ELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMT 449
E S+ Q + ++ G +++ DQ+G+ +Q+ +E + + L T
Sbjct: 701 EFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALST 760
Query: 450 DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 509
+G VIQ+ EH PDQ + E+L L YG VIQ LE KS++V
Sbjct: 761 HPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIV 820
Query: 510 LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 560
E+ G+V+ + + ++V++KC+ A + E + +V T++ P+
Sbjct: 821 AEIRGNVLVLSQHKFASNVVEKCV--THASRTERAVLI--DEVCTMNDGPH 867
Score = 47 (21.6 bits), Expect = 1.4e-62, Sum P(3) = 1.4e-62
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 181 PSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
PSQGP P P ++ GSS ++ ++ G G
Sbjct: 507 PSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 540
Score = 40 (19.1 bits), Expect = 1.4e-62, Sum P(3) = 1.4e-62
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 4 SEAPEANGSADVHVDPCVMDPQDIALISNNGPAAVSFSSSPCPDG 48
S GS+D++ +A I ++ ++SFSSSP P G
Sbjct: 463 SRRDSLTGSSDLYK----RTSSSLAPIGHSFYNSLSFSSSPGPVG 503
Score = 39 (18.8 bits), Expect = 2.2e-59, Sum P(2) = 2.2e-59
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 291 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 345
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 346 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPSNNLASS 401
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 402 SFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 456
>FB|FBgn0003165 [details] [associations]
symbol:pum "pumilio" species:7227 "Drosophila melanogaster"
[GO:0005737 "cytoplasm" evidence=NAS;IDA] [GO:0048477 "oogenesis"
evidence=TAS] [GO:0007280 "pole cell migration" evidence=IMP;TAS]
[GO:0042078 "germ-line stem cell division" evidence=NAS;TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0017148
"negative regulation of translation" evidence=TAS] [GO:0007281
"germ cell development" evidence=TAS] [GO:0001709 "cell fate
determination" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] [GO:0008258 "head involution"
evidence=IMP] [GO:0007268 "synaptic transmission" evidence=IMP]
[GO:0008595 "anterior/posterior axis specification, embryo"
evidence=TAS] [GO:0007067 "mitosis" evidence=TAS] [GO:0045786
"negative regulation of cell cycle" evidence=TAS] [GO:0016477 "cell
migration" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0007616 "long-term memory"
evidence=IMP;TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0050804
"regulation of synaptic transmission" evidence=IMP] [GO:0008582
"regulation of synaptic growth at neuromuscular junction"
evidence=IDA] [GO:0048149 "behavioral response to ethanol"
evidence=IMP] [GO:0042059 "negative regulation of epidermal growth
factor receptor signaling pathway" evidence=IMP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 EMBL:AE014297 GO:GO:0005737 GO:GO:0045892
GO:GO:0007280 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0007067 GO:GO:0008595 GO:GO:0007616 GO:GO:0048477
GO:GO:0048813 GO:GO:0003730 GO:GO:0045727 GO:GO:0042059
GO:GO:0001709 GO:GO:0045786 GO:GO:0008582 GO:GO:0000288
GO:GO:0000900 GO:GO:0008258 GO:GO:0042078 GO:GO:0050804
eggNOG:COG5099 GeneTree:ENSGT00390000017241 EMBL:X62589 EMBL:L07943
EMBL:BT001872 EMBL:BT009970 EMBL:BT021317 PIR:A46221
RefSeq:NP_524285.2 RefSeq:NP_731314.1 RefSeq:NP_731315.1
RefSeq:NP_731316.2 RefSeq:NP_788604.1 UniGene:Dm.1115 PDB:3H3D
PDBsum:3H3D ProteinModelPortal:P25822 SMR:P25822 MINT:MINT-822094
STRING:P25822 PaxDb:P25822 EnsemblMetazoa:FBtr0081990
EnsemblMetazoa:FBtr0081991 EnsemblMetazoa:FBtr0081992
EnsemblMetazoa:FBtr0333667 GeneID:41094 KEGG:dme:Dmel_CG9755
UCSC:CG9755-RA CTD:41094 FlyBase:FBgn0003165 InParanoid:P25822
OMA:LASPTIC OrthoDB:EOG4HMGRT PhylomeDB:P25822
EvolutionaryTrace:P25822 GenomeRNAi:41094 NextBio:822132
Bgee:P25822 GermOnline:CG9755 Uniprot:P25822
Length = 1533
Score = 601 (216.6 bits), Expect = 7.3e-62, Sum P(3) = 7.3e-62
Identities = 114/179 (63%), Positives = 139/179 (77%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
LE+ ++ +L D+A IVEFS DQHGSRFIQQKLE +A EK VF E+L A L
Sbjct: 1096 LEDFRNQRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSL 1155
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 507
MTDVFGNYVIQKFFE G+P+Q+ L ++ G VL L+LQMYGCRVIQKALE I Q+ +
Sbjct: 1156 MTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQQE 1215
Query: 508 LVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+V ELDGHV++CV+DQNGNHV+QKCIECV ++FII+AF+GQV +LSTHPYGCRVIQ
Sbjct: 1216 IVHELDGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQ 1274
Score = 252 (93.8 bits), Expect = 2.8e-18, Sum P(3) = 2.8e-18
Identities = 58/171 (33%), Positives = 91/171 (53%)
Query: 397 QKFELS-DIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L + G +++ ++ +G R IQ+ LE S E++ + E+ H K + D GN+
Sbjct: 1176 QKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQQEIVHELDGHVLKCVKDQNGNH 1235
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + GQV LS YGCRVIQ+ LE Q + ++ EL H
Sbjct: 1236 VVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDELHEH 1295
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ ++DQ GN+VIQ +E E +I++ RG+V LS H + V++
Sbjct: 1296 TEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVE 1346
Score = 232 (86.7 bits), Expect = 4.9e-16, Sum P(3) = 4.9e-16
Identities = 53/172 (30%), Positives = 93/172 (54%)
Query: 396 AQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
A +F ++ G++ S +G R IQ+ LEHC+AE+ + E+ H +L+ D +GNY
Sbjct: 1248 ALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDELHEHTEQLIQDQYGNY 1307
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL--- 512
VIQ EHG + + L + G+VL LS + V++K + +++ L+ E+
Sbjct: 1308 VIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVEKCVTHATRGERTGLIDEVCTF 1367
Query: 513 -DG--HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
D HVM ++DQ N+V+QK I+ +++ +++ R +A L + YG
Sbjct: 1368 NDNALHVM--MKDQYANYVVQKMIDVSEPTQLKKLMTKIRPHMAALRKYTYG 1417
Score = 162 (62.1 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 51/190 (26%), Positives = 86/190 (45%)
Query: 380 EDSKKHSFLEE-LKSSNAQKFEL--SDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+D F+++ L+ + A + ++ S+I D G+ IQ+ E + E+K ++
Sbjct: 1121 QDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTDVFGNYVIQKFFEFGTPEQKNTL 1180
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+V H +L ++G VIQK E SP+Q++E+ +L G VL G V+QK
Sbjct: 1181 GMQVKGHVLQLALQMYGCRVIQKALESISPEQQQEIVHELDGHVLKCVKDQNGNHVVQKC 1240
Query: 497 LEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLS 556
+E ++ ++ G V G VIQ+ +E AE+ I+ L
Sbjct: 1241 IECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDELHEHTEQLI 1300
Query: 557 THPYGCRVIQ 566
YG VIQ
Sbjct: 1301 QDQYGNYVIQ 1310
Score = 123 (48.4 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 35/146 (23%), Positives = 67/146 (45%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
LE + Q+ + ++ G +++ DQ+G+ +Q+ +E + L
Sbjct: 1205 LESISPEQQQEI-VHELDGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSL 1263
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 507
T +G VIQ+ EH + +Q + ++L L YG VIQ LE + KS
Sbjct: 1264 STHPYGCRVIQRILEHCTAEQTTPILDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSI 1323
Query: 508 LVLELDGHVMRCVRDQNGNHVIQKCI 533
L+ + G V+ + + ++V++KC+
Sbjct: 1324 LINSVRGKVLVLSQHKFASNVVEKCV 1349
Score = 57 (25.1 bits), Expect = 7.3e-62, Sum P(3) = 7.3e-62
Identities = 24/94 (25%), Positives = 37/94 (39%)
Query: 89 RKKQEEQKYQGRIMMQQYPSAXXXXXXXXXXXXXXXXSLGMNNAHNAGTYMPSGNPFYPS 148
+++Q++Q+ Q + QY + S G H+ G P N P
Sbjct: 262 QQQQQQQQQQQQQHPGQYNANLLNHAAALGHMSSYAQSGGSMYDHHGGAMHPGMNGGMPK 321
Query: 149 FQP---SGAGVYPSQY-NVGGYA---LNSALFPP 175
QP GAG P Y +GG + +A+ PP
Sbjct: 322 QQPLGPPGAGG-PQDYVYMGGQTTVPMGAAMMPP 354
Score = 42 (19.8 bits), Expect = 7.3e-62, Sum P(3) = 7.3e-62
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 260 ASSGVNGALADPSSKKEPIVAAYMGDQNLQSSLNG 294
A+SG GAL ++ P+ A + QS L G
Sbjct: 957 AASGAYGALGAGNASASPLGAPITPPPSAQSCLLG 991
Score = 39 (18.8 bits), Expect = 3.9e-58, Sum P(2) = 3.9e-58
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 84 AESRMRKKQEEQ 95
AESR R++Q++Q
Sbjct: 997 AESRQRQQQQQQ 1008
>ZFIN|ZDB-GENE-081031-76 [details] [associations]
symbol:pum2 "pumilio homolog 2 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 ZFIN:ZDB-GENE-081031-76
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01062788 EMBL:CABZ01062789
EMBL:CABZ01062790 EMBL:CU468963 IPI:IPI00864826
Ensembl:ENSDART00000086578 Bgee:F1R4Q6 Uniprot:F1R4Q6
Length = 1206
Score = 599 (215.9 bits), Expect = 8.4e-62, Sum P(3) = 8.4e-62
Identities = 116/187 (62%), Positives = 143/187 (76%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G +VEFS DQHGSRFIQQKLE ++ E+ VF E+L
Sbjct: 821 SGRSRLLEDFRNNRFPNLQLRDLPGHMVEFSQDQHGSRFIQQKLERATSAERQMVFGEIL 880
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 881 QAAYQLMTDVFGNYVIQKFFEFGSADQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 940
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ S +V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 941 SDQQVISDIVRELDGHVLKCVKDQNGNHVVQKCIECVQPQALQFIIDAFQGQVFVLSTHP 1000
Query: 560 YGCRVIQ 566
YGCRVIQ
Sbjct: 1001 YGCRVIQ 1007
Score = 169 (64.5 bits), Expect = 6.8e-09, Sum P(3) = 6.8e-09
Identities = 42/122 (34%), Positives = 65/122 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L+ I G ++ ++ +G R IQ+ LE S++++V + +E+ H K + D G
Sbjct: 907 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISDIVRELDGHVLKCVKDQNG 966
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 967 NHVVQKCIECVQPQALQFIIDAFQGQVFVLSTHPYGCRVIQRILEHCTQEQTLPILEELH 1026
Query: 514 GH 515
H
Sbjct: 1027 QH 1028
Score = 165 (63.1 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 50/167 (29%), Positives = 91/167 (54%)
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEV-LPHASKLMTDVFGNYVIQKFFEHGSP 466
I+E + QH + + QK + S + KV+ FK + + L D +GNYVIQ EHG P
Sbjct: 1021 ILE-ELHQHSEQ-LGQK--NTSVQLKVT-FKGLRICSFDLLFKDQYGNYVIQHVLEHGRP 1075
Query: 467 DQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----DG-H--VMRC 519
+ + ++ ++ G+VL LS + V++K + +++ L+ E+ DG H +
Sbjct: 1076 EDKSKIVAEVRGKVLALSQHKFASNVVEKCVIHSSRAERALLIDEVCCQKDGPHSALYTM 1135
Query: 520 VRDQNGNHVIQKCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRVI 565
++DQ N+V+Q+ I+ PA++ + I+ R +ATL + YG ++
Sbjct: 1136 MKDQYANYVVQRMIDMAEPAQR-KIIMHKIRPHIATLRKYTYGKHIL 1181
Score = 55 (24.4 bits), Expect = 8.4e-62, Sum P(3) = 8.4e-62
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 130 NNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGG-YALNSALFPPFVAGYPSQGPVP 187
++ H G +P+G+ Y S P Y S + ++ +S LFPP A Y +P
Sbjct: 764 SSIHLGG--LPNGSGRYISAAPGAEAKYRSSGSTSSLFSSSSQLFPPPRARYSRSDVMP 820
Score = 38 (18.4 bits), Expect = 8.4e-62, Sum P(3) = 8.4e-62
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 37 AVSFSSSPCPDGTETSRNP 55
++ +SSSP P G +P
Sbjct: 731 SLGYSSSPSPIGLTPGHSP 749
>UNIPROTKB|B4E2B6 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AC007041
UniGene:Hs.467824 HGNC:HGNC:14958 ChiTaRS:PUM2 EMBL:AK304198
IPI:IPI01009448 SMR:B4E2B6 STRING:B4E2B6 Ensembl:ENST00000536417
UCSC:uc010yjz.1 Uniprot:B4E2B6
Length = 1008
Score = 615 (221.5 bits), Expect = 1.1e-61, Sum P(2) = 1.1e-61
Identities = 117/185 (63%), Positives = 143/185 (77%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 649 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL 708
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 709 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 768
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q+S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 769 SDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYG 828
Query: 562 CRVIQ 566
CRVIQ
Sbjct: 829 CRVIQ 833
Score = 260 (96.6 bits), Expect = 7.4e-19, Sum P(2) = 7.4e-19
Identities = 61/171 (35%), Positives = 92/171 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L+ I G ++ ++ +G R IQ+ LE S++++ + KE+ H K + D GN+
Sbjct: 735 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNH 794
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 795 VVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQH 854
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ V+DQ GN+VIQ +E E I+S RG+V LS H + V++
Sbjct: 855 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVE 905
Score = 248 (92.4 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 54/176 (30%), Positives = 99/176 (56%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC+AE+ + + +E+ H +L+ D +GNYVI
Sbjct: 809 QFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVI 868
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G+VL LS + V++K + +++ L+ E+ D
Sbjct: 869 QHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQND 928
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ PA++ + I+ R + TL + YG ++
Sbjct: 929 GPHSALYTMMKDQYANYVVQKMIDMAEPAQR-KIIMHKIRPHITTLRKYTYGKHIL 983
Score = 154 (59.3 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 50/191 (26%), Positives = 87/191 (45%)
Query: 380 EDSKKHSFLEEL--KSSNAQK-FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+D F+++ +++ A++ ++I + D G+ IQ+ E S ++K+++
Sbjct: 680 QDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLAL 739
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+ H L ++G VIQK E S DQ+ E+ ++L G VL G V+QK
Sbjct: 740 ATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKC 799
Query: 497 LEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555
+E ++ Q Q +++ G V G VIQ+ +E AE+ I+ L
Sbjct: 800 IECVQ-PQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQL 858
Query: 556 STHPYGCRVIQ 566
YG VIQ
Sbjct: 859 VQDQYGNYVIQ 869
Score = 142 (55.0 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 39/146 (26%), Positives = 71/146 (48%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
LE + SS+ Q + ++ G +++ DQ+G+ +Q+ +E + + L
Sbjct: 764 LESI-SSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVL 822
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 507
T +G VIQ+ EH + +Q + E+L L YG VIQ LE KS+
Sbjct: 823 STHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSK 882
Query: 508 LVLELDGHVMRCVRDQNGNHVIQKCI 533
+V E+ G V+ + + ++V++KC+
Sbjct: 883 IVSEIRGKVLALSQHKFASNVVEKCV 908
Score = 124 (48.7 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 35/128 (27%), Positives = 60/128 (46%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-----P 442
LE + + K +S+I G+++ S + S +++ + H S E+ + EV P
Sbjct: 872 LEHGRPEDKSKI-VSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGP 930
Query: 443 HAS--KLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVI 500
H++ +M D + NYV+QK + P QRK + K+ + L YG ++ K LE
Sbjct: 931 HSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAK-LEKY 989
Query: 501 ELHQKSQL 508
L L
Sbjct: 990 YLKNSPDL 997
Score = 47 (21.6 bits), Expect = 1.1e-61, Sum P(2) = 1.1e-61
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 NAGTYMPSGNPFYPSF----QPSGAGV-YPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
++ + P G PFY S PS G+ PSQ G++L PP ++ + S + +
Sbjct: 542 SSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQ--TPGHSLTP---PPSLSSHGSSSSLHL 596
Query: 189 PFDATSGS 196
T+GS
Sbjct: 597 G-GLTNGS 603
Score = 47 (21.6 bits), Expect = 1.1e-61, Sum P(2) = 1.1e-61
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 139 MPSGNPFYPSFQPSGAGVYPSQYNVGGYALN-SALFPPFVAGYPSQGPVPMPFDATSGSS 197
+ + + Y S A + YN G++ + S + P + P P P ++ GSS
Sbjct: 532 LSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSS 591
Query: 198 FNIRTTSVSTGEG 210
++ ++ G G
Sbjct: 592 SSLHLGGLTNGSG 604
Score = 46 (21.3 bits), Expect = 1.4e-61, Sum P(2) = 1.4e-61
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 230 LQSPFVDPLHMQYFQHPFGDAYNASV-QHRLASSGVNGALADPSSKKEP 277
L P V P QY+ P+G Y A++ Q + A++ N A +S+ +P
Sbjct: 279 LAGPAVVP--PQYYGVPWG-VYPANLFQQQAAAAANNTASQQAASQAQP 324
>UNIPROTKB|E2RT57 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 CTD:23369 OMA:LFDYSSQ
EMBL:AAEX03010760 RefSeq:XP_849088.1 Ensembl:ENSCAFT00000006180
GeneID:607618 KEGG:cfa:607618 Uniprot:E2RT57
Length = 1063
Score = 615 (221.5 bits), Expect = 1.9e-61, Sum P(2) = 1.9e-61
Identities = 117/185 (63%), Positives = 143/185 (77%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 704 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL 763
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 764 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 823
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q+S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 824 SDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYG 883
Query: 562 CRVIQ 566
CRVIQ
Sbjct: 884 CRVIQ 888
Score = 260 (96.6 bits), Expect = 8.7e-19, Sum P(2) = 8.7e-19
Identities = 61/171 (35%), Positives = 92/171 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L+ I G ++ ++ +G R IQ+ LE S++++ + KE+ H K + D GN+
Sbjct: 790 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNH 849
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 850 VVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQH 909
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ V+DQ GN+VIQ +E E I+S RG+V LS H + V++
Sbjct: 910 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVE 960
Score = 248 (92.4 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 54/176 (30%), Positives = 99/176 (56%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC+AE+ + + +E+ H +L+ D +GNYVI
Sbjct: 864 QFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVI 923
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G+VL LS + V++K + +++ L+ E+ D
Sbjct: 924 QHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQND 983
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ PA++ + I+ R + TL + YG ++
Sbjct: 984 GPHSALYTMMKDQYANYVVQKMIDMAEPAQR-KIIMHKIRPHITTLRKYTYGKHIL 1038
Score = 154 (59.3 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 50/191 (26%), Positives = 87/191 (45%)
Query: 380 EDSKKHSFLEEL--KSSNAQK-FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+D F+++ +++ A++ ++I + D G+ IQ+ E S ++K+++
Sbjct: 735 QDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLAL 794
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+ H L ++G VIQK E S DQ+ E+ ++L G VL G V+QK
Sbjct: 795 ATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKC 854
Query: 497 LEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555
+E ++ Q Q +++ G V G VIQ+ +E AE+ I+ L
Sbjct: 855 IECVQ-PQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQL 913
Query: 556 STHPYGCRVIQ 566
YG VIQ
Sbjct: 914 VQDQYGNYVIQ 924
Score = 142 (55.0 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 39/146 (26%), Positives = 71/146 (48%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
LE + SS+ Q + ++ G +++ DQ+G+ +Q+ +E + + L
Sbjct: 819 LESI-SSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVL 877
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 507
T +G VIQ+ EH + +Q + E+L L YG VIQ LE KS+
Sbjct: 878 STHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSK 937
Query: 508 LVLELDGHVMRCVRDQNGNHVIQKCI 533
+V E+ G V+ + + ++V++KC+
Sbjct: 938 IVSEIRGKVLALSQHKFASNVVEKCV 963
Score = 124 (48.7 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 35/128 (27%), Positives = 60/128 (46%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-----P 442
LE + + K +S+I G+++ S + S +++ + H S E+ + EV P
Sbjct: 927 LEHGRPEDKSKI-VSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGP 985
Query: 443 HAS--KLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVI 500
H++ +M D + NYV+QK + P QRK + K+ + L YG ++ K LE
Sbjct: 986 HSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAK-LEKY 1044
Query: 501 ELHQKSQL 508
L L
Sbjct: 1045 YLKNSPDL 1052
Score = 47 (21.6 bits), Expect = 1.9e-61, Sum P(2) = 1.9e-61
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 NAGTYMPSGNPFYPSF----QPSGAGV-YPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
++ + P G PFY S PS G+ PSQ G++L PP ++ + S + +
Sbjct: 597 SSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQ--TPGHSLTP---PPSLSSHGSSSSLHL 651
Query: 189 PFDATSGS 196
T+GS
Sbjct: 652 G-GLTNGS 658
Score = 47 (21.6 bits), Expect = 1.9e-61, Sum P(2) = 1.9e-61
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 139 MPSGNPFYPSFQPSGAGVYPSQYNVGGYALN-SALFPPFVAGYPSQGPVPMPFDATSGSS 197
+ + + Y S A + YN G++ + S + P + P P P ++ GSS
Sbjct: 587 LSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSS 646
Query: 198 FNIRTTSVSTGEG 210
++ ++ G G
Sbjct: 647 SSLHLGGLTNGSG 659
Score = 45 (20.9 bits), Expect = 3.2e-61, Sum P(2) = 3.2e-61
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 230 LQSPFVDPLHMQYFQHPFGDAYNASV-QHRLASSGVNGALADPSSKKEP 277
L P V P QY+ P+G Y A++ Q + A++ N A +S+ +P
Sbjct: 335 LAGPAVVP--PQYYGVPWG-VYPANLFQQQAAAAANNTANQQAASQAQP 380
>UNIPROTKB|F1SCU6 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AEMK01186664
EMBL:CU466989 Ensembl:ENSSSCT00000009411 Uniprot:F1SCU6
Length = 1064
Score = 615 (221.5 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 117/185 (63%), Positives = 143/185 (77%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 705 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL 764
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 765 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 824
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q+S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 825 SDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYG 884
Query: 562 CRVIQ 566
CRVIQ
Sbjct: 885 CRVIQ 889
Score = 260 (96.6 bits), Expect = 8.7e-19, Sum P(2) = 8.7e-19
Identities = 61/171 (35%), Positives = 92/171 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L+ I G ++ ++ +G R IQ+ LE S++++ + KE+ H K + D GN+
Sbjct: 791 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNH 850
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 851 VVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQH 910
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ V+DQ GN+VIQ +E E I+S RG+V LS H + V++
Sbjct: 911 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVE 961
Score = 248 (92.4 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 54/176 (30%), Positives = 99/176 (56%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC+AE+ + + +E+ H +L+ D +GNYVI
Sbjct: 865 QFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVI 924
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G+VL LS + V++K + +++ L+ E+ D
Sbjct: 925 QHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQND 984
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ PA++ + I+ R + TL + YG ++
Sbjct: 985 GPHSALYTMMKDQYANYVVQKMIDMAEPAQR-KIIMHKIRPHITTLRKYTYGKHIL 1039
Score = 154 (59.3 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 50/191 (26%), Positives = 87/191 (45%)
Query: 380 EDSKKHSFLEEL--KSSNAQK-FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+D F+++ +++ A++ ++I + D G+ IQ+ E S ++K+++
Sbjct: 736 QDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLAL 795
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+ H L ++G VIQK E S DQ+ E+ ++L G VL G V+QK
Sbjct: 796 ATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKC 855
Query: 497 LEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555
+E ++ Q Q +++ G V G VIQ+ +E AE+ I+ L
Sbjct: 856 IECVQ-PQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQL 914
Query: 556 STHPYGCRVIQ 566
YG VIQ
Sbjct: 915 VQDQYGNYVIQ 925
Score = 142 (55.0 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 39/146 (26%), Positives = 71/146 (48%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
LE + SS+ Q + ++ G +++ DQ+G+ +Q+ +E + + L
Sbjct: 820 LESI-SSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVL 878
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 507
T +G VIQ+ EH + +Q + E+L L YG VIQ LE KS+
Sbjct: 879 STHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSK 938
Query: 508 LVLELDGHVMRCVRDQNGNHVIQKCI 533
+V E+ G V+ + + ++V++KC+
Sbjct: 939 IVSEIRGKVLALSQHKFASNVVEKCV 964
Score = 124 (48.7 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 35/128 (27%), Positives = 60/128 (46%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-----P 442
LE + + K +S+I G+++ S + S +++ + H S E+ + EV P
Sbjct: 928 LEHGRPEDKSKI-VSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGP 986
Query: 443 HAS--KLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVI 500
H++ +M D + NYV+QK + P QRK + K+ + L YG ++ K LE
Sbjct: 987 HSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAK-LEKY 1045
Query: 501 ELHQKSQL 508
L L
Sbjct: 1046 YLKNSPDL 1053
Score = 47 (21.6 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 NAGTYMPSGNPFYPSF----QPSGAGV-YPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
++ + P G PFY S PS G+ PSQ G++L PP ++ + S + +
Sbjct: 598 SSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQ--TPGHSLTP---PPSLSSHGSSSSLHL 652
Query: 189 PFDATSGS 196
T+GS
Sbjct: 653 G-GLTNGS 659
Score = 47 (21.6 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 139 MPSGNPFYPSFQPSGAGVYPSQYNVGGYALN-SALFPPFVAGYPSQGPVPMPFDATSGSS 197
+ + + Y S A + YN G++ + S + P + P P P ++ GSS
Sbjct: 588 LSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSS 647
Query: 198 FNIRTTSVSTGEG 210
++ ++ G G
Sbjct: 648 SSLHLGGLTNGSG 660
Score = 45 (20.9 bits), Expect = 3.2e-61, Sum P(2) = 3.2e-61
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 230 LQSPFVDPLHMQYFQHPFGDAYNASV-QHRLASSGVNGALADPSSKKEP 277
L P V P QY+ P+G Y A++ Q + A++ N A +S+ +P
Sbjct: 339 LAGPAVVP--PQYYGVPWG-VYPANLFQQQAAAAANNTANQQAASQAQP 384
>UNIPROTKB|F1N2B8 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:DAAA02031737
IPI:IPI00703675 Ensembl:ENSBTAT00000014813 Uniprot:F1N2B8
Length = 1069
Score = 615 (221.5 bits), Expect = 2.1e-61, Sum P(2) = 2.1e-61
Identities = 117/185 (63%), Positives = 143/185 (77%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 710 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL 769
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 770 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 829
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q+S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 830 SDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYG 889
Query: 562 CRVIQ 566
CRVIQ
Sbjct: 890 CRVIQ 894
Score = 260 (96.6 bits), Expect = 8.8e-19, Sum P(2) = 8.8e-19
Identities = 61/171 (35%), Positives = 92/171 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L+ I G ++ ++ +G R IQ+ LE S++++ + KE+ H K + D GN+
Sbjct: 796 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNH 855
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 856 VVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQH 915
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ V+DQ GN+VIQ +E E I+S RG+V LS H + V++
Sbjct: 916 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVE 966
Score = 249 (92.7 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 54/176 (30%), Positives = 100/176 (56%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC+AE+ + + +E+ H +L+ D +GNYVI
Sbjct: 870 QFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVI 929
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G+VL LS + V++K + +++ L+ E+ D
Sbjct: 930 QHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQND 989
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ PA++ + I+ R ++TL + YG ++
Sbjct: 990 GPHSALYTMMKDQYANYVVQKMIDMAEPAQR-KIIMHKIRPHISTLRKYTYGKHIL 1044
Score = 154 (59.3 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 50/191 (26%), Positives = 87/191 (45%)
Query: 380 EDSKKHSFLEEL--KSSNAQK-FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+D F+++ +++ A++ ++I + D G+ IQ+ E S ++K+++
Sbjct: 741 QDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLAL 800
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+ H L ++G VIQK E S DQ+ E+ ++L G VL G V+QK
Sbjct: 801 ATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKC 860
Query: 497 LEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555
+E ++ Q Q +++ G V G VIQ+ +E AE+ I+ L
Sbjct: 861 IECVQ-PQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQL 919
Query: 556 STHPYGCRVIQ 566
YG VIQ
Sbjct: 920 VQDQYGNYVIQ 930
Score = 142 (55.0 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 39/146 (26%), Positives = 71/146 (48%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
LE + SS+ Q + ++ G +++ DQ+G+ +Q+ +E + + L
Sbjct: 825 LESI-SSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVL 883
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 507
T +G VIQ+ EH + +Q + E+L L YG VIQ LE KS+
Sbjct: 884 STHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSK 943
Query: 508 LVLELDGHVMRCVRDQNGNHVIQKCI 533
+V E+ G V+ + + ++V++KC+
Sbjct: 944 IVSEIRGKVLALSQHKFASNVVEKCV 969
Score = 123 (48.4 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 35/128 (27%), Positives = 60/128 (46%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-----P 442
LE + + K +S+I G+++ S + S +++ + H S E+ + EV P
Sbjct: 933 LEHGRPEDKSKI-VSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGP 991
Query: 443 HAS--KLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVI 500
H++ +M D + NYV+QK + P QRK + K+ + L YG ++ K LE
Sbjct: 992 HSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHISTLRKYTYGKHILAK-LEKY 1050
Query: 501 ELHQKSQL 508
L L
Sbjct: 1051 YLKNSPDL 1058
Score = 47 (21.6 bits), Expect = 2.1e-61, Sum P(2) = 2.1e-61
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 NAGTYMPSGNPFYPSF----QPSGAGV-YPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
++ + P G PFY S PS G+ PSQ G++L PP ++ + S + +
Sbjct: 603 SSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQ--TPGHSLTP---PPSLSSHGSSSSLHL 657
Query: 189 PFDATSGS 196
T+GS
Sbjct: 658 G-GLTNGS 664
Score = 47 (21.6 bits), Expect = 2.1e-61, Sum P(2) = 2.1e-61
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 139 MPSGNPFYPSFQPSGAGVYPSQYNVGGYALN-SALFPPFVAGYPSQGPVPMPFDATSGSS 197
+ + + Y S A + YN G++ + S + P + P P P ++ GSS
Sbjct: 593 LSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSS 652
Query: 198 FNIRTTSVSTGEG 210
++ ++ G G
Sbjct: 653 SSLHLGGLTNGSG 665
Score = 45 (20.9 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 230 LQSPFVDPLHMQYFQHPFGDAYNASV-QHRLASSGVNGALADPSSKKEP 277
L P V P QY+ P+G Y A++ Q + A++ N A +S+ +P
Sbjct: 341 LAGPAVVP--PQYYGVPWG-VYPANLFQQQAAAAANNTANQQAASQAQP 386
>UNIPROTKB|F1NV23 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00735100 Ensembl:ENSGALT00000026590 Uniprot:F1NV23
Length = 1061
Score = 611 (220.1 bits), Expect = 5.3e-61, Sum P(2) = 5.3e-61
Identities = 116/185 (62%), Positives = 143/185 (77%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 702 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL 761
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 762 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 821
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 822 PDQQNEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYG 881
Query: 562 CRVIQ 566
CRVIQ
Sbjct: 882 CRVIQ 886
Score = 257 (95.5 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 61/171 (35%), Positives = 91/171 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L+ I G ++ ++ +G R IQ+ LE S +++ + KE+ H K + D GN+
Sbjct: 788 QKLALATRIRGHVLPLALQMYGCRVIQKALESISPDQQNEMVKELDGHVLKCVKDQNGNH 847
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 848 VVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQH 907
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ V+DQ GN+VIQ +E E I+S RG+V LS H + V++
Sbjct: 908 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVE 958
Score = 248 (92.4 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 54/176 (30%), Positives = 99/176 (56%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC+AE+ + + +E+ H +L+ D +GNYVI
Sbjct: 862 QFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVI 921
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G+VL LS + V++K + +++ L+ E+ D
Sbjct: 922 QHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQND 981
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ PA++ + I+ R + TL + YG ++
Sbjct: 982 GPHSALYTMMKDQYANYVVQKMIDMAEPAQR-KIIMHKIRPHITTLRKYTYGKHIL 1036
Score = 162 (62.1 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 51/191 (26%), Positives = 88/191 (46%)
Query: 380 EDSKKHSFLEEL--KSSNAQK-FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+D F+++ +++ A++ ++I + D G+ IQ+ E S ++K+++
Sbjct: 733 QDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLAL 792
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+ H L ++G VIQK E SPDQ+ E+ ++L G VL G V+QK
Sbjct: 793 ATRIRGHVLPLALQMYGCRVIQKALESISPDQQNEMVKELDGHVLKCVKDQNGNHVVQKC 852
Query: 497 LEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555
+E ++ Q Q +++ G V G VIQ+ +E AE+ I+ L
Sbjct: 853 IECVQ-PQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQL 911
Query: 556 STHPYGCRVIQ 566
YG VIQ
Sbjct: 912 VQDQYGNYVIQ 922
Score = 137 (53.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 38/146 (26%), Positives = 70/146 (47%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
LE + S + Q + ++ G +++ DQ+G+ +Q+ +E + + L
Sbjct: 817 LESI-SPDQQNEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVL 875
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 507
T +G VIQ+ EH + +Q + E+L L YG VIQ LE KS+
Sbjct: 876 STHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSK 935
Query: 508 LVLELDGHVMRCVRDQNGNHVIQKCI 533
+V E+ G V+ + + ++V++KC+
Sbjct: 936 IVSEIRGKVLALSQHKFASNVVEKCV 961
Score = 130 (50.8 bits), Expect = 0.00011, P = 0.00011
Identities = 63/250 (25%), Positives = 100/250 (40%)
Query: 327 SPIASPVLPS-------SPVGSTSQLGLRHEMRLPQGLNRNTGIY-SGWQGQRTFEGQRT 378
SPI P LPS +P S S G + L GL +G Y S G + +
Sbjct: 617 SPIGMP-LPSQTPGHSLTPPPSLSSHGSSSSLHLG-GLTNGSGRYISAAPGAEA-KYRSA 673
Query: 379 FEDSKKHSFLEELKSSNAQKFELSDI--AGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
S S +L + ++ SDI +GR D +RF +L
Sbjct: 674 ASTSSLFSSTSQLFPPSRLRYSRSDIMPSGRS-RLLEDFRNNRFPNLQL----------- 721
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
++++ H + D G+ IQ+ E +P +R+ + +++ L ++G VIQK
Sbjct: 722 -RDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKF 780
Query: 497 LEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLS 556
E L QK L + GHV+ G VIQK +E + ++ ++ G V
Sbjct: 781 FEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISPDQQNEMVKELDGHVLKCV 840
Query: 557 THPYGCRVIQ 566
G V+Q
Sbjct: 841 KDQNGNHVVQ 850
Score = 126 (49.4 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 35/128 (27%), Positives = 61/128 (47%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-----P 442
LE + + K +S+I G+++ S + S +++ + H S E+ + EV P
Sbjct: 925 LEHGRPEDKSKI-VSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGP 983
Query: 443 HAS--KLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVI 500
H++ +M D + NYV+QK + P QRK + K+ + L YG ++ K LE
Sbjct: 984 HSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAK-LEKY 1042
Query: 501 ELHQKSQL 508
L + L
Sbjct: 1043 YLKNSADL 1050
Score = 47 (21.6 bits), Expect = 5.3e-61, Sum P(2) = 5.3e-61
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 NAGTYMPSGNPFYPSF----QPSGAGV-YPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
++ + P G PFY S PS G+ PSQ G++L PP ++ + S + +
Sbjct: 595 SSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQ--TPGHSLTP---PPSLSSHGSSSSLHL 649
Query: 189 PFDATSGS 196
T+GS
Sbjct: 650 G-GLTNGS 656
Score = 47 (21.6 bits), Expect = 5.3e-61, Sum P(2) = 5.3e-61
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 139 MPSGNPFYPSFQPSGAGVYPSQYNVGGYALN-SALFPPFVAGYPSQGPVPMPFDATSGSS 197
+ + + Y S A + YN G++ + S + P + P P P ++ GSS
Sbjct: 585 LSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSS 644
Query: 198 FNIRTTSVSTGEG 210
++ ++ G G
Sbjct: 645 SSLHLGGLTNGSG 657
>UNIPROTKB|E1BWC0 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0034063 "stress
granule assembly" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00682927 Ensembl:ENSGALT00000026591 Uniprot:E1BWC0
Length = 1062
Score = 611 (220.1 bits), Expect = 5.3e-61, Sum P(2) = 5.3e-61
Identities = 116/185 (62%), Positives = 143/185 (77%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 703 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL 762
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 763 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 822
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 823 PDQQNEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYG 882
Query: 562 CRVIQ 566
CRVIQ
Sbjct: 883 CRVIQ 887
Score = 257 (95.5 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 61/171 (35%), Positives = 91/171 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L+ I G ++ ++ +G R IQ+ LE S +++ + KE+ H K + D GN+
Sbjct: 789 QKLALATRIRGHVLPLALQMYGCRVIQKALESISPDQQNEMVKELDGHVLKCVKDQNGNH 848
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 849 VVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQH 908
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ V+DQ GN+VIQ +E E I+S RG+V LS H + V++
Sbjct: 909 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVE 959
Score = 248 (92.4 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 54/176 (30%), Positives = 99/176 (56%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC+AE+ + + +E+ H +L+ D +GNYVI
Sbjct: 863 QFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVI 922
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G+VL LS + V++K + +++ L+ E+ D
Sbjct: 923 QHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQND 982
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ PA++ + I+ R + TL + YG ++
Sbjct: 983 GPHSALYTMMKDQYANYVVQKMIDMAEPAQR-KIIMHKIRPHITTLRKYTYGKHIL 1037
Score = 162 (62.1 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 51/191 (26%), Positives = 88/191 (46%)
Query: 380 EDSKKHSFLEEL--KSSNAQK-FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+D F+++ +++ A++ ++I + D G+ IQ+ E S ++K+++
Sbjct: 734 QDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLAL 793
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+ H L ++G VIQK E SPDQ+ E+ ++L G VL G V+QK
Sbjct: 794 ATRIRGHVLPLALQMYGCRVIQKALESISPDQQNEMVKELDGHVLKCVKDQNGNHVVQKC 853
Query: 497 LEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555
+E ++ Q Q +++ G V G VIQ+ +E AE+ I+ L
Sbjct: 854 IECVQ-PQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQL 912
Query: 556 STHPYGCRVIQ 566
YG VIQ
Sbjct: 913 VQDQYGNYVIQ 923
Score = 137 (53.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 38/146 (26%), Positives = 70/146 (47%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
LE + S + Q + ++ G +++ DQ+G+ +Q+ +E + + L
Sbjct: 818 LESI-SPDQQNEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVL 876
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 507
T +G VIQ+ EH + +Q + E+L L YG VIQ LE KS+
Sbjct: 877 STHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSK 936
Query: 508 LVLELDGHVMRCVRDQNGNHVIQKCI 533
+V E+ G V+ + + ++V++KC+
Sbjct: 937 IVSEIRGKVLALSQHKFASNVVEKCV 962
Score = 130 (50.8 bits), Expect = 0.00011, P = 0.00011
Identities = 63/250 (25%), Positives = 100/250 (40%)
Query: 327 SPIASPVLPS-------SPVGSTSQLGLRHEMRLPQGLNRNTGIY-SGWQGQRTFEGQRT 378
SPI P LPS +P S S G + L GL +G Y S G + +
Sbjct: 618 SPIGMP-LPSQTPGHSLTPPPSLSSHGSSSSLHLG-GLTNGSGRYISAAPGAEA-KYRSA 674
Query: 379 FEDSKKHSFLEELKSSNAQKFELSDI--AGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
S S +L + ++ SDI +GR D +RF +L
Sbjct: 675 ASTSSLFSSTSQLFPPSRLRYSRSDIMPSGRS-RLLEDFRNNRFPNLQL----------- 722
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
++++ H + D G+ IQ+ E +P +R+ + +++ L ++G VIQK
Sbjct: 723 -RDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKF 781
Query: 497 LEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLS 556
E L QK L + GHV+ G VIQK +E + ++ ++ G V
Sbjct: 782 FEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISPDQQNEMVKELDGHVLKCV 841
Query: 557 THPYGCRVIQ 566
G V+Q
Sbjct: 842 KDQNGNHVVQ 851
Score = 126 (49.4 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 35/128 (27%), Positives = 61/128 (47%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-----P 442
LE + + K +S+I G+++ S + S +++ + H S E+ + EV P
Sbjct: 926 LEHGRPEDKSKI-VSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGP 984
Query: 443 HAS--KLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVI 500
H++ +M D + NYV+QK + P QRK + K+ + L YG ++ K LE
Sbjct: 985 HSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAK-LEKY 1043
Query: 501 ELHQKSQL 508
L + L
Sbjct: 1044 YLKNSADL 1051
Score = 47 (21.6 bits), Expect = 5.3e-61, Sum P(2) = 5.3e-61
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 NAGTYMPSGNPFYPSF----QPSGAGV-YPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
++ + P G PFY S PS G+ PSQ G++L PP ++ + S + +
Sbjct: 596 SSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQ--TPGHSLTP---PPSLSSHGSSSSLHL 650
Query: 189 PFDATSGS 196
T+GS
Sbjct: 651 G-GLTNGS 657
Score = 47 (21.6 bits), Expect = 5.3e-61, Sum P(2) = 5.3e-61
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 139 MPSGNPFYPSFQPSGAGVYPSQYNVGGYALN-SALFPPFVAGYPSQGPVPMPFDATSGSS 197
+ + + Y S A + YN G++ + S + P + P P P ++ GSS
Sbjct: 586 LSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSS 645
Query: 198 FNIRTTSVSTGEG 210
++ ++ G G
Sbjct: 646 SSLHLGGLTNGSG 658
>RGD|1311024 [details] [associations]
symbol:Pum2 "pumilio homolog 2 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 RGD:1311024
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
IPI:IPI00950922 Ensembl:ENSRNOT00000064843 ArrayExpress:D4A0R8
Uniprot:D4A0R8
Length = 904
Score = 602 (217.0 bits), Expect = 6.7e-61, Sum P(2) = 6.7e-61
Identities = 116/187 (62%), Positives = 143/187 (76%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E++
Sbjct: 543 SGRSRLLEDFRNNRFPNLQLRDLMGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIV 602
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 603 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALANRIRGHVLPLALQMYGCRVIQKALESIS 662
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 663 SDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHP 722
Query: 560 YGCRVIQ 566
YGCRVIQ
Sbjct: 723 YGCRVIQ 729
Score = 257 (95.5 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 62/173 (35%), Positives = 94/173 (54%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L++ I G ++ ++ +G R IQ+ LE S++++V + KE+ H K + D G
Sbjct: 629 QKLALANRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNG 688
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 689 NHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELH 748
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
H + V+DQ GN+VIQ +E E I+S RG+V LS H + V++
Sbjct: 749 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVE 801
Score = 248 (92.4 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 54/176 (30%), Positives = 99/176 (56%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC+AE+ + + +E+ H +L+ D +GNYVI
Sbjct: 705 QFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVI 764
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G+VL LS + V++K + +++ L+ E+ D
Sbjct: 765 QHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQND 824
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ PA++ + I+ R + TL + YG ++
Sbjct: 825 GPHSALYTMMKDQYANYVVQKMIDMAEPAQR-KIIMHKIRPHITTLRKYTYGKHIL 879
Score = 136 (52.9 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 38/147 (25%), Positives = 69/147 (46%)
Query: 388 LEELKSSNAQKFEL-SDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASK 446
LE + S E+ ++ G +++ DQ+G+ +Q+ +E + +
Sbjct: 658 LESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFV 717
Query: 447 LMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKS 506
L T +G VIQ+ EH + +Q + E+L L YG VIQ LE KS
Sbjct: 718 LSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKS 777
Query: 507 QLVLELDGHVMRCVRDQNGNHVIQKCI 533
++V E+ G V+ + + ++V++KC+
Sbjct: 778 KIVSEIRGKVLALSQHKFASNVVEKCV 804
Score = 124 (48.7 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 35/128 (27%), Positives = 60/128 (46%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-----P 442
LE + + K +S+I G+++ S + S +++ + H S E+ + EV P
Sbjct: 768 LEHGRPEDKSKI-VSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGP 826
Query: 443 HAS--KLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVI 500
H++ +M D + NYV+QK + P QRK + K+ + L YG ++ K LE
Sbjct: 827 HSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAK-LEKY 885
Query: 501 ELHQKSQL 508
L L
Sbjct: 886 YLKNSPDL 893
Score = 47 (21.6 bits), Expect = 6.7e-61, Sum P(2) = 6.7e-61
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 NAGTYMPSGNPFYPSF----QPSGAGV-YPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
++ + P G PFY S PS G+ PSQ G++L PP ++ + S + +
Sbjct: 436 SSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQ--TPGHSLTP---PPSLSSHGSSSSLHL 490
Query: 189 PFDATSGS 196
T+GS
Sbjct: 491 G-GLTNGS 497
Score = 47 (21.6 bits), Expect = 6.7e-61, Sum P(2) = 6.7e-61
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 139 MPSGNPFYPSFQPSGAGVYPSQYNVGGYALN-SALFPPFVAGYPSQGPVPMPFDATSGSS 197
+ + + Y S A + YN G++ + S + P + P P P ++ GSS
Sbjct: 426 LSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSS 485
Query: 198 FNIRTTSVSTGEG 210
++ ++ G G
Sbjct: 486 SSLHLGGLTNGSG 498
Score = 46 (21.3 bits), Expect = 8.5e-61, Sum P(2) = 8.5e-61
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 230 LQSPFVDPLHMQYFQHPFGDAYNASV-QHRLASSGVNGALADPSSKKEP 277
L P V P QY+ P+G Y A++ Q + A++ N A +S+ +P
Sbjct: 171 LAGPAVVP--PQYYGVPWG-VYPANLFQQQAAAAASNTANQQAASQAQP 216
>UNIPROTKB|F1STL2 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:CU928875
Ensembl:ENSSSCT00000003986 OMA:ANHVVEF Uniprot:F1STL2
Length = 735
Score = 593 (213.8 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 113/185 (61%), Positives = 142/185 (76%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 376 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 435
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 436 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 495
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 496 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 555
Query: 562 CRVIQ 566
CRVIQ
Sbjct: 556 CRVIQ 560
Score = 247 (92.0 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 58/171 (33%), Positives = 91/171 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L++ I G ++ ++ +G R IQ+ LE ++++ + +E+ H K + D GN+
Sbjct: 462 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNH 521
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 522 VVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQH 581
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ V+DQ GN+VIQ +E E I++ RG V LS H + V++
Sbjct: 582 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 632
Score = 238 (88.8 bits), Expect = 6.3e-17, Sum P(2) = 6.3e-17
Identities = 52/176 (29%), Positives = 97/176 (55%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC ++ + + +E+ H +L+ D +GNYVI
Sbjct: 536 QFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVI 595
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G VL LS + V++K + +++ L+ E+ D
Sbjct: 596 QHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMND 655
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ PA++ + ++ R +ATL + YG ++
Sbjct: 656 GPHSALYTMMKDQYANYVVQKMIDVAEPAQR-KIVMHKIRPHIATLRKYTYGKHIL 710
Score = 148 (57.2 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 44/171 (25%), Positives = 80/171 (46%)
Query: 390 ELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMT 449
E S+ Q + ++ G +++ DQ+G+ +Q+ +E + + L T
Sbjct: 492 EFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALST 551
Query: 450 DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 509
+G VIQ+ EH PDQ + E+L L YG VIQ LE KS++V
Sbjct: 552 HPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIV 611
Query: 510 LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 560
E+ G+V+ + + ++V++KC+ A + E + +V T++ P+
Sbjct: 612 AEIRGNVLVLSQHKFASNVVEKCV--THASRTERAVLI--DEVCTMNDGPH 658
Score = 48 (22.0 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 159 SQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
S YN G + +S+ P + PSQGP P P ++ GSS ++ ++ G G
Sbjct: 279 SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 331
Score = 39 (18.8 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 82 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 136
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 137 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPSNNLASS 192
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 193 SFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 247
Score = 37 (18.1 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 284 LSFSSSPGPVG 294
>UNIPROTKB|Q8TB72 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 EMBL:CH471053 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 HOGENOM:HOG000238461
HOVERGEN:HBG049462 EMBL:AF315591 EMBL:D87078 EMBL:AC007041
EMBL:AK093847 EMBL:BC024218 EMBL:BC112046 EMBL:BC112048
EMBL:AF272350 IPI:IPI00022184 IPI:IPI00398749 IPI:IPI00398750
RefSeq:NP_056132.1 UniGene:Hs.467824 PDB:3Q0Q PDB:3Q0R PDB:3Q0S
PDBsum:3Q0Q PDBsum:3Q0R PDBsum:3Q0S ProteinModelPortal:Q8TB72
SMR:Q8TB72 IntAct:Q8TB72 MINT:MINT-254513 STRING:Q8TB72
PhosphoSite:Q8TB72 DMDM:41688714 PaxDb:Q8TB72 PRIDE:Q8TB72
Ensembl:ENST00000319801 Ensembl:ENST00000338086
Ensembl:ENST00000361078 Ensembl:ENST00000403432
Ensembl:ENST00000440577 GeneID:23369 KEGG:hsa:23369 UCSC:uc002rds.1
CTD:23369 GeneCards:GC02M020448 HGNC:HGNC:14958 HPA:HPA030316
MIM:607205 neXtProt:NX_Q8TB72 PharmGKB:PA34043 InParanoid:Q8TB72
OMA:HITSIPR PhylomeDB:Q8TB72 ChiTaRS:PUM2 EvolutionaryTrace:Q8TB72
GenomeRNAi:23369 NextBio:45440 ArrayExpress:Q8TB72 Bgee:Q8TB72
CleanEx:HS_PUM2 Genevestigator:Q8TB72 GermOnline:ENSG00000055917
Uniprot:Q8TB72
Length = 1066
Score = 604 (217.7 bits), Expect = 3.3e-60, Sum P(2) = 3.3e-60
Identities = 117/187 (62%), Positives = 143/187 (76%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 705 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL 764
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 765 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 824
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 825 SDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHP 884
Query: 560 YGCRVIQ 566
YGCRVIQ
Sbjct: 885 YGCRVIQ 891
Score = 255 (94.8 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 62/173 (35%), Positives = 93/173 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L+ I G ++ ++ +G R IQ+ LE S++++V + KE+ H K + D G
Sbjct: 791 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNG 850
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 851 NHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELH 910
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
H + V+DQ GN+VIQ +E E I+S RG+V LS H + V++
Sbjct: 911 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVE 963
Score = 248 (92.4 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 54/176 (30%), Positives = 99/176 (56%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC+AE+ + + +E+ H +L+ D +GNYVI
Sbjct: 867 QFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVI 926
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G+VL LS + V++K + +++ L+ E+ D
Sbjct: 927 QHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQND 986
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ PA++ + I+ R + TL + YG ++
Sbjct: 987 GPHSALYTMMKDQYANYVVQKMIDMAEPAQR-KIIMHKIRPHITTLRKYTYGKHIL 1041
Score = 136 (52.9 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 38/147 (25%), Positives = 69/147 (46%)
Query: 388 LEELKSSNAQKFEL-SDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASK 446
LE + S E+ ++ G +++ DQ+G+ +Q+ +E + +
Sbjct: 820 LESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFV 879
Query: 447 LMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKS 506
L T +G VIQ+ EH + +Q + E+L L YG VIQ LE KS
Sbjct: 880 LSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKS 939
Query: 507 QLVLELDGHVMRCVRDQNGNHVIQKCI 533
++V E+ G V+ + + ++V++KC+
Sbjct: 940 KIVSEIRGKVLALSQHKFASNVVEKCV 966
Score = 124 (48.7 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 35/128 (27%), Positives = 60/128 (46%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-----P 442
LE + + K +S+I G+++ S + S +++ + H S E+ + EV P
Sbjct: 930 LEHGRPEDKSKI-VSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGP 988
Query: 443 HAS--KLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVI 500
H++ +M D + NYV+QK + P QRK + K+ + L YG ++ K LE
Sbjct: 989 HSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAK-LEKY 1047
Query: 501 ELHQKSQL 508
L L
Sbjct: 1048 YLKNSPDL 1055
Score = 47 (21.6 bits), Expect = 3.3e-60, Sum P(2) = 3.3e-60
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 NAGTYMPSGNPFYPSF----QPSGAGV-YPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
++ + P G PFY S PS G+ PSQ G++L PP ++ + S + +
Sbjct: 598 SSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQ--TPGHSLTP---PPSLSSHGSSSSLHL 652
Query: 189 PFDATSGS 196
T+GS
Sbjct: 653 G-GLTNGS 659
Score = 47 (21.6 bits), Expect = 3.3e-60, Sum P(2) = 3.3e-60
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 139 MPSGNPFYPSFQPSGAGVYPSQYNVGGYALN-SALFPPFVAGYPSQGPVPMPFDATSGSS 197
+ + + Y S A + YN G++ + S + P + P P P ++ GSS
Sbjct: 588 LSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSS 647
Query: 198 FNIRTTSVSTGEG 210
++ ++ G G
Sbjct: 648 SSLHLGGLTNGSG 660
Score = 46 (21.3 bits), Expect = 4.2e-60, Sum P(2) = 4.2e-60
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 230 LQSPFVDPLHMQYFQHPFGDAYNASV-QHRLASSGVNGALADPSSKKEP 277
L P V P QY+ P+G Y A++ Q + A++ N A +S+ +P
Sbjct: 335 LAGPAVVP--PQYYGVPWG-VYPANLFQQQAAAAANNTASQQAASQAQP 380
>MGI|MGI:1931751 [details] [associations]
symbol:Pum2 "pumilio 2 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0030425
"dendrite" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO;IDA] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931751 GO:GO:0048471
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0043025 GO:GO:0030425 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HOGENOM:HOG000238461 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP CTD:23369
ChiTaRS:PUM2 EMBL:AY027917 EMBL:AF315590 EMBL:AK122225
EMBL:BC013765 EMBL:BC041773 IPI:IPI00112203 IPI:IPI00400191
IPI:IPI00400192 RefSeq:NP_001153691.1 RefSeq:NP_001153694.1
RefSeq:NP_109648.2 UniGene:Mm.341243 PDB:3GVO PDB:3GVT PDBsum:3GVO
PDBsum:3GVT ProteinModelPortal:Q80U58 SMR:Q80U58 IntAct:Q80U58
STRING:Q80U58 PhosphoSite:Q80U58 PaxDb:Q80U58 PRIDE:Q80U58
Ensembl:ENSMUST00000163569 Ensembl:ENSMUST00000168361
Ensembl:ENSMUST00000169089 Ensembl:ENSMUST00000178015 GeneID:80913
KEGG:mmu:80913 UCSC:uc007mzw.2 UCSC:uc007mzy.2 UCSC:uc007naa.2
InParanoid:Q80U58 OMA:LFDYSSQ EvolutionaryTrace:Q80U58
NextBio:350290 Bgee:Q80U58 CleanEx:MM_PUM2 Genevestigator:Q80U58
GermOnline:ENSMUSG00000020594 Uniprot:Q80U58
Length = 1066
Score = 603 (217.3 bits), Expect = 4.2e-60, Sum P(2) = 4.2e-60
Identities = 117/187 (62%), Positives = 143/187 (76%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 705 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEIL 764
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 765 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 824
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 825 SDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHP 884
Query: 560 YGCRVIQ 566
YGCRVIQ
Sbjct: 885 YGCRVIQ 891
Score = 255 (94.8 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 62/173 (35%), Positives = 93/173 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L+ I G ++ ++ +G R IQ+ LE S++++V + KE+ H K + D G
Sbjct: 791 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNG 850
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 851 NHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELH 910
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
H + V+DQ GN+VIQ +E E I+S RG+V LS H + V++
Sbjct: 911 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVE 963
Score = 248 (92.4 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 54/176 (30%), Positives = 99/176 (56%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC+AE+ + + +E+ H +L+ D +GNYVI
Sbjct: 867 QFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVI 926
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G+VL LS + V++K + +++ L+ E+ D
Sbjct: 927 QHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQND 986
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ PA++ + I+ R + TL + YG ++
Sbjct: 987 GPHSALYTMMKDQYANYVVQKMIDMAEPAQR-KIIMHKIRPHITTLRKYTYGKHIL 1041
Score = 136 (52.9 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 38/147 (25%), Positives = 69/147 (46%)
Query: 388 LEELKSSNAQKFEL-SDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASK 446
LE + S E+ ++ G +++ DQ+G+ +Q+ +E + +
Sbjct: 820 LESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFV 879
Query: 447 LMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKS 506
L T +G VIQ+ EH + +Q + E+L L YG VIQ LE KS
Sbjct: 880 LSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKS 939
Query: 507 QLVLELDGHVMRCVRDQNGNHVIQKCI 533
++V E+ G V+ + + ++V++KC+
Sbjct: 940 KIVSEIRGKVLALSQHKFASNVVEKCV 966
Score = 124 (48.7 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 35/128 (27%), Positives = 60/128 (46%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-----P 442
LE + + K +S+I G+++ S + S +++ + H S E+ + EV P
Sbjct: 930 LEHGRPEDKSKI-VSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGP 988
Query: 443 HAS--KLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVI 500
H++ +M D + NYV+QK + P QRK + K+ + L YG ++ K LE
Sbjct: 989 HSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAK-LEKY 1047
Query: 501 ELHQKSQL 508
L L
Sbjct: 1048 YLKNSPDL 1055
Score = 47 (21.6 bits), Expect = 4.2e-60, Sum P(2) = 4.2e-60
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 NAGTYMPSGNPFYPSF----QPSGAGV-YPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
++ + P G PFY S PS G+ PSQ G++L PP ++ + S + +
Sbjct: 598 SSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQ--TPGHSLTP---PPSLSSHGSSSSLHL 652
Query: 189 PFDATSGS 196
T+GS
Sbjct: 653 G-GLTNGS 659
Score = 47 (21.6 bits), Expect = 4.2e-60, Sum P(2) = 4.2e-60
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 139 MPSGNPFYPSFQPSGAGVYPSQYNVGGYALN-SALFPPFVAGYPSQGPVPMPFDATSGSS 197
+ + + Y S A + YN G++ + S + P + P P P ++ GSS
Sbjct: 588 LSTSSDLYKRSSSSLAPIGQPFYNSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSS 647
Query: 198 FNIRTTSVSTGEG 210
++ ++ G G
Sbjct: 648 SSLHLGGLTNGSG 660
Score = 46 (21.3 bits), Expect = 5.3e-60, Sum P(2) = 5.3e-60
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 230 LQSPFVDPLHMQYFQHPFGDAYNASV-QHRLASSGVNGALADPSSKKEP 277
L P V P QY+ P+G Y A++ Q + A++ N A +S+ +P
Sbjct: 334 LAGPAVVP--PQYYGVPWG-VYPANLFQQQAAAAASNTANQQAASQAQP 379
>MGI|MGI:1931749 [details] [associations]
symbol:Pum1 "pumilio 1 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931749
GO:GO:0005737 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099
GeneTree:ENSGT00390000017241 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK OrthoDB:EOG4P8FHP ChiTaRS:PUM1
EMBL:AF321909 EMBL:AK122205 EMBL:AK052145 EMBL:BC048174
EMBL:BC050747 IPI:IPI00330262 IPI:IPI00400349 IPI:IPI00400350
IPI:IPI00400351 RefSeq:NP_001153075.1 RefSeq:NP_001153076.1
RefSeq:NP_001153077.1 RefSeq:NP_001153078.1 RefSeq:NP_109647.2
UniGene:Mm.440206 ProteinModelPortal:Q80U78 SMR:Q80U78
IntAct:Q80U78 STRING:Q80U78 PhosphoSite:Q80U78 PaxDb:Q80U78
PRIDE:Q80U78 Ensembl:ENSMUST00000030315 Ensembl:ENSMUST00000097862
Ensembl:ENSMUST00000097864 GeneID:80912 KEGG:mmu:80912
UCSC:uc008uzl.2 InParanoid:Q80U78 NextBio:350286 Bgee:Q80U78
CleanEx:MM_PUM1 Genevestigator:Q80U78 Uniprot:Q80U78
Length = 1189
Score = 588 (212.0 bits), Expect = 5.0e-60, Sum P(3) = 5.0e-60
Identities = 114/187 (60%), Positives = 143/187 (76%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE +A E+ VF E+L
Sbjct: 828 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEIL 887
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 888 QAAYQLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 947
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 948 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 1007
Query: 560 YGCRVIQ 566
YGCRVIQ
Sbjct: 1008 YGCRVIQ 1014
Score = 247 (92.0 bits), Expect = 6.5e-17, Sum P(3) = 6.5e-17
Identities = 60/176 (34%), Positives = 94/176 (53%)
Query: 394 SNAQKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTD 450
S+ QK L++ I G ++ ++ +G R IQ+ LE ++++V + +E+ H K + D
Sbjct: 911 SHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 970
Query: 451 VFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVL 510
GN+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++
Sbjct: 971 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILE 1030
Query: 511 ELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
EL H + V+DQ GN+VIQ +E E I++ RG V LS H + V++
Sbjct: 1031 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1086
Score = 235 (87.8 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 50/175 (28%), Positives = 94/175 (53%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC ++ + + +E+ H +L+ D +GNYVI
Sbjct: 990 QFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVI 1049
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G VL LS + V++K + +++ L+ E+ D
Sbjct: 1050 QHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMND 1109
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ + + ++ R +ATL + YG ++
Sbjct: 1110 GPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 1164
Score = 143 (55.4 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 41/158 (25%), Positives = 75/158 (47%)
Query: 403 DIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFE 462
++ G +++ DQ+G+ +Q+ +E + + L T +G VIQ+ E
Sbjct: 959 ELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILE 1018
Query: 463 HGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRD 522
H PDQ + E+L L YG VIQ LE KS++V E+ G+V+ +
Sbjct: 1019 HCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQH 1078
Query: 523 QNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 560
+ ++V++KC+ A + E + +V T++ P+
Sbjct: 1079 KFASNVVEKCV--THASRTERAVLI--DEVCTMNDGPH 1112
Score = 47 (21.6 bits), Expect = 5.0e-60, Sum P(3) = 5.0e-60
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 181 PSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
PSQGP P P ++ GSS ++ ++ G G
Sbjct: 750 PSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 783
Score = 40 (19.1 bits), Expect = 5.0e-60, Sum P(3) = 5.0e-60
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 4 SEAPEANGSADVHVDPCVMDPQDIALISNNGPAAVSFSSSPCPDG 48
S GS+D++ +A I ++ +++S+SSSP P G
Sbjct: 706 SRRDSLTGSSDLYK----RTSSSLAPIGHSFYSSLSYSSSPGPVG 746
Score = 39 (18.8 bits), Expect = 2.7e-57, Sum P(2) = 2.7e-57
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 534 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 588
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 589 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPSNNLASS 644
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 645 SFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 699
>UNIPROTKB|E9PR38 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00909786 ProteinModelPortal:E9PR38 SMR:E9PR38
Ensembl:ENST00000424085 ArrayExpress:E9PR38 Bgee:E9PR38
Uniprot:E9PR38
Length = 944
Score = 593 (213.8 bits), Expect = 1.2e-59, Sum P(2) = 1.2e-59
Identities = 113/185 (61%), Positives = 142/185 (76%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 585 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 644
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 645 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 704
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 705 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 764
Query: 562 CRVIQ 566
CRVIQ
Sbjct: 765 CRVIQ 769
Score = 247 (92.0 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 58/171 (33%), Positives = 91/171 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L++ I G ++ ++ +G R IQ+ LE ++++ + +E+ H K + D GN+
Sbjct: 671 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNH 730
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 731 VVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQH 790
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ V+DQ GN+VIQ +E E I++ RG V LS H + V++
Sbjct: 791 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 841
Score = 235 (87.8 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 50/175 (28%), Positives = 94/175 (53%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC ++ + + +E+ H +L+ D +GNYVI
Sbjct: 745 QFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVI 804
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G VL LS + V++K + +++ L+ E+ D
Sbjct: 805 QHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMND 864
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ + + ++ R +ATL + YG ++
Sbjct: 865 GPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 919
Score = 148 (57.2 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 44/171 (25%), Positives = 80/171 (46%)
Query: 390 ELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMT 449
E S+ Q + ++ G +++ DQ+G+ +Q+ +E + + L T
Sbjct: 701 EFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALST 760
Query: 450 DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 509
+G VIQ+ EH PDQ + E+L L YG VIQ LE KS++V
Sbjct: 761 HPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIV 820
Query: 510 LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 560
E+ G+V+ + + ++V++KC+ A + E + +V T++ P+
Sbjct: 821 AEIRGNVLVLSQHKFASNVVEKCV--THASRTERAVLI--DEVCTMNDGPH 867
Score = 48 (22.0 bits), Expect = 1.2e-59, Sum P(2) = 1.2e-59
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 159 SQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
S YN G + +S+ P + PSQGP P P ++ GSS ++ ++ G G
Sbjct: 488 SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 540
Score = 39 (18.8 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 291 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 345
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 346 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPNNNLASS 401
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 402 SFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 456
Score = 37 (18.1 bits), Expect = 1.7e-58, Sum P(2) = 1.7e-58
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 493 LSFSSSPGPVG 503
>UNIPROTKB|B4DG92 [details] [associations]
symbol:PUM1 "cDNA FLJ56067, highly similar to Pumilio
homolog 1" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
HOGENOM:HOG000238461 HOVERGEN:HBG049462 EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 EMBL:AK294477
IPI:IPI00939543 SMR:B4DG92 STRING:B4DG92 Ensembl:ENST00000373742
UCSC:uc010ogb.1 Uniprot:B4DG92
Length = 1127
Score = 593 (213.8 bits), Expect = 6.3e-59, Sum P(2) = 6.3e-59
Identities = 113/185 (61%), Positives = 142/185 (76%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 768 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 827
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 828 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 887
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 888 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 947
Query: 562 CRVIQ 566
CRVIQ
Sbjct: 948 CRVIQ 952
Score = 247 (92.0 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 58/171 (33%), Positives = 91/171 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L++ I G ++ ++ +G R IQ+ LE ++++ + +E+ H K + D GN+
Sbjct: 854 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNH 913
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 914 VVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQH 973
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ V+DQ GN+VIQ +E E I++ RG V LS H + V++
Sbjct: 974 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1024
Score = 235 (87.8 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 50/175 (28%), Positives = 94/175 (53%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC ++ + + +E+ H +L+ D +GNYVI
Sbjct: 928 QFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVI 987
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G VL LS + V++K + +++ L+ E+ D
Sbjct: 988 QHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMND 1047
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ + + ++ R +ATL + YG ++
Sbjct: 1048 GPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 1102
Score = 148 (57.2 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 44/171 (25%), Positives = 80/171 (46%)
Query: 390 ELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMT 449
E S+ Q + ++ G +++ DQ+G+ +Q+ +E + + L T
Sbjct: 884 EFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALST 943
Query: 450 DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 509
+G VIQ+ EH PDQ + E+L L YG VIQ LE KS++V
Sbjct: 944 HPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIV 1003
Query: 510 LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 560
E+ G+V+ + + ++V++KC+ A + E + +V T++ P+
Sbjct: 1004 AEIRGNVLVLSQHKFASNVVEKCV--THASRTERAVLI--DEVCTMNDGPH 1050
Score = 48 (22.0 bits), Expect = 6.3e-59, Sum P(2) = 6.3e-59
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 159 SQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
S YN G + +S+ P + PSQGP P P ++ GSS ++ ++ G G
Sbjct: 671 SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 723
Score = 39 (18.8 bits), Expect = 5.6e-58, Sum P(2) = 5.6e-58
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 474 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 528
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 529 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPNNNLASS 584
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 585 SFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 639
Score = 37 (18.1 bits), Expect = 9.0e-58, Sum P(2) = 9.0e-58
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 676 LSFSSSPGPVG 686
>UNIPROTKB|E1BE82 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 CTD:9698 OMA:RHVVGVK
EMBL:DAAA02006263 EMBL:DAAA02006264 EMBL:DAAA02006265
IPI:IPI00713931 RefSeq:NP_001180052.1 UniGene:Bt.44441
Ensembl:ENSBTAT00000025262 GeneID:535450 KEGG:bta:535450
NextBio:20876753 Uniprot:E1BE82
Length = 1186
Score = 593 (213.8 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 113/185 (61%), Positives = 142/185 (76%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 827 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 886
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 887 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 946
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 947 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 1006
Query: 562 CRVIQ 566
CRVIQ
Sbjct: 1007 CRVIQ 1011
Score = 247 (92.0 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 58/171 (33%), Positives = 91/171 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L++ I G ++ ++ +G R IQ+ LE ++++ + +E+ H K + D GN+
Sbjct: 913 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNH 972
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 973 VVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQH 1032
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ V+DQ GN+VIQ +E E I++ RG V LS H + V++
Sbjct: 1033 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1083
Score = 238 (88.8 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 52/176 (29%), Positives = 97/176 (55%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC ++ + + +E+ H +L+ D +GNYVI
Sbjct: 987 QFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVI 1046
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G VL LS + V++K + +++ L+ E+ D
Sbjct: 1047 QHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMND 1106
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ PA++ + ++ R +ATL + YG ++
Sbjct: 1107 GPHSALYTMMKDQYANYVVQKMIDVAEPAQR-KIVMHKIRPHIATLRKYTYGKHIL 1161
Score = 148 (57.2 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 44/171 (25%), Positives = 80/171 (46%)
Query: 390 ELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMT 449
E S+ Q + ++ G +++ DQ+G+ +Q+ +E + + L T
Sbjct: 943 EFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALST 1002
Query: 450 DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 509
+G VIQ+ EH PDQ + E+L L YG VIQ LE KS++V
Sbjct: 1003 HPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIV 1062
Query: 510 LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 560
E+ G+V+ + + ++V++KC+ A + E + +V T++ P+
Sbjct: 1063 AEIRGNVLVLSQHKFASNVVEKCV--THASRTERAVLI--DEVCTMNDGPH 1109
Score = 48 (22.0 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 159 SQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
S YN G + +S+ P + PSQGP P P ++ GSS ++ ++ G G
Sbjct: 730 SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 782
Score = 39 (18.8 bits), Expect = 7.8e-58, Sum P(2) = 7.8e-58
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 533 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 587
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 588 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPSNNLASS 643
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 644 SFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 698
Score = 37 (18.1 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 735 LSFSSSPGPVG 745
>UNIPROTKB|Q14671 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS]
[GO:0016044 "cellular membrane organization" evidence=TAS]
Reactome:REACT_11123 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005829 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 GO:GO:0016044
GO:GO:0006892 eggNOG:COG5099 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AF315592 EMBL:D43951
EMBL:AL356320 EMBL:AL445235 EMBL:AK291779 EMBL:BC013398
IPI:IPI00551014 IPI:IPI00941189 RefSeq:NP_001018494.1
RefSeq:NP_055491.1 UniGene:Hs.281707 PDB:1IB2 PDB:1M8W PDB:1M8X
PDB:1M8Y PDB:1M8Z PDB:2YJY PDB:3BSB PDB:3BSX PDB:3Q0L PDB:3Q0M
PDB:3Q0N PDB:3Q0O PDB:3Q0P PDBsum:1IB2 PDBsum:1M8W PDBsum:1M8X
PDBsum:1M8Y PDBsum:1M8Z PDBsum:2YJY PDBsum:3BSB PDBsum:3BSX
PDBsum:3Q0L PDBsum:3Q0M PDBsum:3Q0N PDBsum:3Q0O PDBsum:3Q0P
ProteinModelPortal:Q14671 SMR:Q14671 DIP:DIP-29082N IntAct:Q14671
MINT:MINT-1199500 STRING:Q14671 PhosphoSite:Q14671 DMDM:41688619
UCD-2DPAGE:Q14671 PaxDb:Q14671 PRIDE:Q14671 DNASU:9698
Ensembl:ENST00000257075 Ensembl:ENST00000440538 GeneID:9698
KEGG:hsa:9698 UCSC:uc001bsi.1 UCSC:uc001bsj.1 GeneCards:GC01M031405
HGNC:HGNC:14957 HPA:HPA027424 MIM:607204 neXtProt:NX_Q14671
PharmGKB:PA34042 PhylomeDB:Q14671 ChiTaRS:PUM1
EvolutionaryTrace:Q14671 GenomeRNAi:9698 NextBio:36439
ArrayExpress:Q14671 Bgee:Q14671 CleanEx:HS_PUM1
Genevestigator:Q14671 GermOnline:ENSG00000134644 Uniprot:Q14671
Length = 1186
Score = 593 (213.8 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 113/185 (61%), Positives = 142/185 (76%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 827 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 886
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 887 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 946
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 947 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 1006
Query: 562 CRVIQ 566
CRVIQ
Sbjct: 1007 CRVIQ 1011
Score = 247 (92.0 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 58/171 (33%), Positives = 91/171 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L++ I G ++ ++ +G R IQ+ LE ++++ + +E+ H K + D GN+
Sbjct: 913 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNH 972
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 973 VVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQH 1032
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ V+DQ GN+VIQ +E E I++ RG V LS H + V++
Sbjct: 1033 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1083
Score = 235 (87.8 bits), Expect = 5.8e-16, Sum P(2) = 5.8e-16
Identities = 50/175 (28%), Positives = 94/175 (53%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC ++ + + +E+ H +L+ D +GNYVI
Sbjct: 987 QFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVI 1046
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G VL LS + V++K + +++ L+ E+ D
Sbjct: 1047 QHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMND 1106
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ + + ++ R +ATL + YG ++
Sbjct: 1107 GPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 1161
Score = 148 (57.2 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 44/171 (25%), Positives = 80/171 (46%)
Query: 390 ELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMT 449
E S+ Q + ++ G +++ DQ+G+ +Q+ +E + + L T
Sbjct: 943 EFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALST 1002
Query: 450 DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 509
+G VIQ+ EH PDQ + E+L L YG VIQ LE KS++V
Sbjct: 1003 HPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIV 1062
Query: 510 LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 560
E+ G+V+ + + ++V++KC+ A + E + +V T++ P+
Sbjct: 1063 AEIRGNVLVLSQHKFASNVVEKCV--THASRTERAVLI--DEVCTMNDGPH 1109
Score = 48 (22.0 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 159 SQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
S YN G + +S+ P + PSQGP P P ++ GSS ++ ++ G G
Sbjct: 730 SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 782
Score = 39 (18.8 bits), Expect = 7.8e-58, Sum P(2) = 7.8e-58
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 533 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 587
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 588 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPNNNLASS 643
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 644 SFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 698
Score = 37 (18.1 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 735 LSFSSSPGPVG 745
>DICTYBASE|DDB_G0279735 [details] [associations]
symbol:pufA "RNA binding protein" species:44689
"Dictyostelium discoideum" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 dictyBase:DDB_G0279735
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000032
OMA:FNDSANG RefSeq:XP_641551.1 EnsemblProtists:DDB0233053
GeneID:8622225 KEGG:ddi:DDB_G0279735 InParanoid:Q54WA7
ProtClustDB:CLSZ2846814 Uniprot:Q54WA7
Length = 785
Score = 578 (208.5 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 113/191 (59%), Positives = 143/191 (74%)
Query: 376 QRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS 435
Q+T E + + LE+ ++ K ELSDI G I EFS DQ GSR IQQK+E+ S EEK
Sbjct: 433 QQTNEYTTRSQLLEDFRNLK-MKLELSDIKGHIAEFSKDQVGSRIIQQKIENASLEEKQL 491
Query: 436 VFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQK 495
VF EV+ LMTDVFGNYV+QKFFEHG+ +Q++ LA+KL G +L L+LQMYGCRVIQK
Sbjct: 492 VFDEVVVAVHSLMTDVFGNYVLQKFFEHGTTEQKRILADKLSGHILSLTLQMYGCRVIQK 551
Query: 496 ALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555
A+E IEL ++ L+ EL+GH+++CV DQNGNHVIQKCIE +P I+FII +F G + L
Sbjct: 552 AIESIELDKQILLIGELNGHIVQCVTDQNGNHVIQKCIEKIPTHLIQFIIDSFHGHIYQL 611
Query: 556 STHPYGCRVIQ 566
+THPYGCRVIQ
Sbjct: 612 ATHPYGCRVIQ 622
Score = 215 (80.7 bits), Expect = 9.6e-14, Sum P(2) = 9.6e-14
Identities = 55/172 (31%), Positives = 92/172 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L+D ++G I+ ++ +G R IQ+ +E ++++ + E+ H + +TD GN+
Sbjct: 524 QKRILADKLSGHILSLTLQMYGCRVIQKAIESIELDKQILLIGELNGHIVQCVTDQNGNH 583
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
VIQK E + + + G + L+ YGCRVIQ+ LE Q + ++ EL
Sbjct: 584 VIQKCIEKIPTHLIQFIIDSFHGHIYQLATHPYGCRVIQRILEHCAEKQVAPILDELMRC 643
Query: 516 VMRCVRDQNGNHVIQKCIEC-VPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ V+DQ GN+VIQ +E P +K I+ +GQ+ LS H + VI+
Sbjct: 644 AVSLVQDQYGNYVIQHVLENGTPRDK-SAIVCKLQGQIYNLSQHKFASNVIE 694
Score = 196 (74.1 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 51/178 (28%), Positives = 93/178 (52%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G I + + +G R IQ+ LEHC+ ++ + E++ A L+ D +GNYVI
Sbjct: 598 QFIIDSFHGHIYQLATHPYGCRVIQRILEHCAEKQVAPILDELMRCAVSLVQDQYGNYVI 657
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH-- 515
Q E+G+P + + KL GQ+ LS + VI+K ++ ++ ++ E+ G
Sbjct: 658 QHVLENGTPRDKSAIVCKLQGQIYNLSQHKFASNVIEKCVQHGCTAERILIINEILGDAN 717
Query: 516 -------VMRCVRDQNGNHVIQKCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRVI 565
+++ ++D N+VIQK ++ V PA++ + II+ + V TL G +I
Sbjct: 718 SPNSSNVLLKILKDPYANYVIQKILDIVEPAQR-DMIINRIQPFVPTLKKVTPGKHII 774
Score = 152 (58.6 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 46/173 (26%), Positives = 84/173 (48%)
Query: 401 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKF 460
+ ++ G IV+ DQ+G+ IQ+ +E + H +L T +G VIQ+
Sbjct: 565 IGELNGHIVQCVTDQNGNHVIQKCIEKIPTHLIQFIIDSFHGHIYQLATHPYGCRVIQRI 624
Query: 461 FEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCV 520
EH + Q + ++L+ + L YG VIQ LE KS +V +L G +
Sbjct: 625 LEHCAEKQVAPILDELMRCAVSLVQDQYGNYVIQHVLENGTPRDKSAIVCKLQGQIYNLS 684
Query: 521 RDQNGNHVIQKCIE--CVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ-PHNN 570
+ + ++VI+KC++ C AE+I II+ G + ++ ++++ P+ N
Sbjct: 685 QHKFASNVIEKCVQHGCT-AERI-LIINEILGDANSPNSSNVLLKILKDPYAN 735
Score = 43 (20.2 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 24 PQDIALISNNGPAAVSFSSSPCPDGTETS 52
P ++SNN +V SSSP P + S
Sbjct: 359 PAPNVVLSNNSTNSVVSSSSPPPTTSSPS 387
>UNIPROTKB|H0YDK8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000498419 Uniprot:H0YDK8
Length = 900
Score = 582 (209.9 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 113/187 (60%), Positives = 142/187 (75%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 539 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 598
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 599 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 658
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 659 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 718
Query: 560 YGCRVIQ 566
YGCRVIQ
Sbjct: 719 YGCRVIQ 725
Score = 243 (90.6 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 59/173 (34%), Positives = 92/173 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L++ I G ++ ++ +G R IQ+ LE ++++V + +E+ H K + D G
Sbjct: 625 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 684
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 685 NHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELH 744
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
H + V+DQ GN+VIQ +E E I++ RG V LS H + V++
Sbjct: 745 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 797
Score = 235 (87.8 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 50/175 (28%), Positives = 94/175 (53%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC ++ + + +E+ H +L+ D +GNYVI
Sbjct: 701 QFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVI 760
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G VL LS + V++K + +++ L+ E+ D
Sbjct: 761 QHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMND 820
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ + + ++ R +ATL + YG ++
Sbjct: 821 GPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 875
Score = 143 (55.4 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 41/158 (25%), Positives = 75/158 (47%)
Query: 403 DIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFE 462
++ G +++ DQ+G+ +Q+ +E + + L T +G VIQ+ E
Sbjct: 670 ELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILE 729
Query: 463 HGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRD 522
H PDQ + E+L L YG VIQ LE KS++V E+ G+V+ +
Sbjct: 730 HCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQH 789
Query: 523 QNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 560
+ ++V++KC+ A + E + +V T++ P+
Sbjct: 790 KFASNVVEKCV--THASRTERAVLI--DEVCTMNDGPH 823
Score = 48 (22.0 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 159 SQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
S YN G + +S+ P + PSQGP P P ++ GSS ++ ++ G G
Sbjct: 442 SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 494
Score = 39 (18.8 bits), Expect = 9.6e-58, Sum P(2) = 9.6e-58
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 245 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 299
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 300 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPNNNLASS 355
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 356 SFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 410
Score = 37 (18.1 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 447 LSFSSSPGPVG 457
>UNIPROTKB|E7EWT3 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00939543 ProteinModelPortal:E7EWT3 SMR:E7EWT3
Ensembl:ENST00000423018 UCSC:uc010oga.1 ArrayExpress:E7EWT3
Bgee:E7EWT3 Uniprot:E7EWT3
Length = 1044
Score = 582 (209.9 bits), Expect = 5.6e-58, Sum P(2) = 5.6e-58
Identities = 113/187 (60%), Positives = 142/187 (75%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 683 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 742
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 743 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 802
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 803 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 862
Query: 560 YGCRVIQ 566
YGCRVIQ
Sbjct: 863 YGCRVIQ 869
Score = 243 (90.6 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
Identities = 59/173 (34%), Positives = 92/173 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L++ I G ++ ++ +G R IQ+ LE ++++V + +E+ H K + D G
Sbjct: 769 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 828
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 829 NHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELH 888
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
H + V+DQ GN+VIQ +E E I++ RG V LS H + V++
Sbjct: 889 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 941
Score = 235 (87.8 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
Identities = 50/175 (28%), Positives = 94/175 (53%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC ++ + + +E+ H +L+ D +GNYVI
Sbjct: 845 QFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVI 904
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G VL LS + V++K + +++ L+ E+ D
Sbjct: 905 QHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMND 964
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ + + ++ R +ATL + YG ++
Sbjct: 965 GPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 1019
Score = 143 (55.4 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 41/158 (25%), Positives = 75/158 (47%)
Query: 403 DIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFE 462
++ G +++ DQ+G+ +Q+ +E + + L T +G VIQ+ E
Sbjct: 814 ELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILE 873
Query: 463 HGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRD 522
H PDQ + E+L L YG VIQ LE KS++V E+ G+V+ +
Sbjct: 874 HCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQH 933
Query: 523 QNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 560
+ ++V++KC+ A + E + +V T++ P+
Sbjct: 934 KFASNVVEKCV--THASRTERAVLI--DEVCTMNDGPH 967
Score = 48 (22.0 bits), Expect = 5.6e-58, Sum P(2) = 5.6e-58
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 159 SQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
S YN G + +S+ P + PSQGP P P ++ GSS ++ ++ G G
Sbjct: 586 SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 638
Score = 37 (18.1 bits), Expect = 8.1e-57, Sum P(2) = 8.1e-57
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 591 LSFSSSPGPVG 601
>ZFIN|ZDB-GENE-030131-2074 [details] [associations]
symbol:pum1 "pumilio homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 ZFIN:ZDB-GENE-030131-2074 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01057427 EMBL:CABZ01093012
EMBL:CU207343 IPI:IPI00995409 Ensembl:ENSDART00000122308
ArrayExpress:E7FFV0 Bgee:E7FFV0 Uniprot:E7FFV0
Length = 1154
Score = 576 (207.8 bits), Expect = 7.4e-58, Sum P(2) = 7.4e-58
Identities = 114/188 (60%), Positives = 141/188 (75%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG ++EFS DQHGSRFIQ KLE S E+ VF E+L
Sbjct: 792 SGRSRLLEDFRNNRYPNLQLREIAGHVMEFSQDQHGSRFIQLKLERASPAERQLVFNEIL 851
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS DQ+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 852 QAAYQLMVDVFGNYVIQKFFEFGSLDQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 911
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQ-VATLSTH 558
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV ++FII AF+GQ V LSTH
Sbjct: 912 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPHALQFIIDAFKGQQVFALSTH 971
Query: 559 PYGCRVIQ 566
PYGCRVIQ
Sbjct: 972 PYGCRVIQ 979
Score = 238 (88.8 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 60/174 (34%), Positives = 93/174 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L++ I G ++ ++ +G R IQ+ LE ++++V + +E+ H K + D G
Sbjct: 878 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 937
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQ-VLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL 512
N+V+QK E P + + + GQ V LS YGCRVIQ+ LE Q ++ E+
Sbjct: 938 NHVVQKCIECVQPHALQFIIDAFKGQQVFALSTHPYGCRVIQRILEHCLPEQTLSILEEI 997
Query: 513 DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
H + V+DQ GN+VIQ +E AE I+S RG V LS H + V++
Sbjct: 998 HQHTEQLVQDQYGNYVIQHVLEHGRAEDKSKIVSEIRGNVLGLSQHKFASNVVE 1051
Score = 232 (86.7 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 55/185 (29%), Positives = 99/185 (53%)
Query: 390 ELKSSNAQKFELSDIAGRIVEFSVDQH--GSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
E +A +F + G+ V F++ H G R IQ+ LEHC E+ +S+ +E+ H +L
Sbjct: 946 ECVQPHALQFIIDAFKGQQV-FALSTHPYGCRVIQRILEHCLPEQTLSILEEIHQHTEQL 1004
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 507
+ D +GNYVIQ EHG + + ++ ++ G VL LS + V++K + +++
Sbjct: 1005 VQDQYGNYVIQHVLEHGRAEDKSKIVSEIRGNVLGLSQHKFASNVVEKCVTHSLRAERAM 1064
Query: 508 LVLEL----DG-H--VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 560
L+ E+ DG H + ++DQ N+V+QK I+ + + ++ R +ATL + Y
Sbjct: 1065 LIDEVCSMADGPHSALYTMMKDQYANYVVQKMIDVAEPTQRKIVMHKIRPHIATLRKYTY 1124
Query: 561 GCRVI 565
G ++
Sbjct: 1125 GKHIL 1129
Score = 115 (45.5 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 30/115 (26%), Positives = 55/115 (47%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-----P 442
LE ++ + K +S+I G ++ S + S +++ + H E+ + EV P
Sbjct: 1018 LEHGRAEDKSKI-VSEIRGNVLGLSQHKFASNVVEKCVTHSLRAERAMLIDEVCSMADGP 1076
Query: 443 HAS--KLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQK 495
H++ +M D + NYV+QK + P QRK + K+ + L YG ++ K
Sbjct: 1077 HSALYTMMKDQYANYVVQKMIDVAEPTQRKIVMHKIRPHIATLRKYTYGKHILAK 1131
Score = 56 (24.8 bits), Expect = 7.4e-58, Sum P(2) = 7.4e-58
Identities = 21/67 (31%), Positives = 32/67 (47%)
Query: 148 SFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTT 203
S P G G + YN G + +S+ P + P+QGP P P +T GSS ++
Sbjct: 687 SLTPIGHGAF---YN--GLSFSSSPGPVGMP-LPNQGPSHSLTPPPSLSTHGSSSSLNLG 740
Query: 204 SVSTGEG 210
++ G G
Sbjct: 741 GLTNGSG 747
Score = 37 (18.1 bits), Expect = 7.4e-56, Sum P(2) = 7.4e-56
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 700 LSFSSSPGPVG 710
>UNIPROTKB|F6XHY4 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 GeneTree:ENSGT00390000017241
OMA:RHVVGVK Ensembl:ENSCAFT00000017823 EMBL:AAEX03001673
Uniprot:F6XHY4
Length = 1162
Score = 582 (209.9 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 113/187 (60%), Positives = 142/187 (75%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 801 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 860
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 861 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 920
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 921 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 980
Query: 560 YGCRVIQ 566
YGCRVIQ
Sbjct: 981 YGCRVIQ 987
Score = 243 (90.6 bits), Expect = 7.0e-17, Sum P(2) = 7.0e-17
Identities = 59/173 (34%), Positives = 92/173 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L++ I G ++ ++ +G R IQ+ LE ++++V + +E+ H K + D G
Sbjct: 887 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 946
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 947 NHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELH 1006
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
H + V+DQ GN+VIQ +E E I++ RG V LS H + V++
Sbjct: 1007 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1059
Score = 238 (88.8 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 52/176 (29%), Positives = 97/176 (55%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC ++ + + +E+ H +L+ D +GNYVI
Sbjct: 963 QFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVI 1022
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G VL LS + V++K + +++ L+ E+ D
Sbjct: 1023 QHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMND 1082
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ PA++ + ++ R +ATL + YG ++
Sbjct: 1083 GPHSALYTMMKDQYANYVVQKMIDVAEPAQR-KIVMHKIRPHIATLRKYTYGKHIL 1137
Score = 143 (55.4 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 41/158 (25%), Positives = 75/158 (47%)
Query: 403 DIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFE 462
++ G +++ DQ+G+ +Q+ +E + + L T +G VIQ+ E
Sbjct: 932 ELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILE 991
Query: 463 HGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRD 522
H PDQ + E+L L YG VIQ LE KS++V E+ G+V+ +
Sbjct: 992 HCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQH 1051
Query: 523 QNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 560
+ ++V++KC+ A + E + +V T++ P+
Sbjct: 1052 KFASNVVEKCV--THASRTERAVLI--DEVCTMNDGPH 1085
Score = 48 (22.0 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 159 SQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
S YN G + +S+ P + PSQGP P P ++ GSS ++ ++ G G
Sbjct: 704 SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 756
Score = 37 (18.1 bits), Expect = 1.7e-56, Sum P(2) = 1.7e-56
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 709 LSFSSSPGPVG 719
>UNIPROTKB|E9PCJ0 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 CTD:9698 EMBL:AL356320 EMBL:AL445235
RefSeq:NP_001018494.1 UniGene:Hs.281707 DNASU:9698 GeneID:9698
KEGG:hsa:9698 HGNC:HGNC:14957 ChiTaRS:PUM1 GenomeRNAi:9698
NextBio:36439 IPI:IPI00941275 ProteinModelPortal:E9PCJ0 SMR:E9PCJ0
Ensembl:ENST00000426105 UCSC:uc001bsh.1 ArrayExpress:E9PCJ0
Bgee:E9PCJ0 Uniprot:E9PCJ0
Length = 1188
Score = 582 (209.9 bits), Expect = 1.4e-57, Sum P(2) = 1.4e-57
Identities = 113/187 (60%), Positives = 142/187 (75%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 827 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 886
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 887 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 946
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 947 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 1006
Query: 560 YGCRVIQ 566
YGCRVIQ
Sbjct: 1007 YGCRVIQ 1013
Score = 243 (90.6 bits), Expect = 7.5e-17, Sum P(2) = 7.5e-17
Identities = 59/173 (34%), Positives = 92/173 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L++ I G ++ ++ +G R IQ+ LE ++++V + +E+ H K + D G
Sbjct: 913 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 972
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 973 NHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELH 1032
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
H + V+DQ GN+VIQ +E E I++ RG V LS H + V++
Sbjct: 1033 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1085
Score = 235 (87.8 bits), Expect = 5.8e-16, Sum P(2) = 5.8e-16
Identities = 50/175 (28%), Positives = 94/175 (53%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC ++ + + +E+ H +L+ D +GNYVI
Sbjct: 989 QFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVI 1048
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G VL LS + V++K + +++ L+ E+ D
Sbjct: 1049 QHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMND 1108
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ + + ++ R +ATL + YG ++
Sbjct: 1109 GPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 1163
Score = 143 (55.4 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 41/158 (25%), Positives = 75/158 (47%)
Query: 403 DIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFE 462
++ G +++ DQ+G+ +Q+ +E + + L T +G VIQ+ E
Sbjct: 958 ELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILE 1017
Query: 463 HGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRD 522
H PDQ + E+L L YG VIQ LE KS++V E+ G+V+ +
Sbjct: 1018 HCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQH 1077
Query: 523 QNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 560
+ ++V++KC+ A + E + +V T++ P+
Sbjct: 1078 KFASNVVEKCV--THASRTERAVLI--DEVCTMNDGPH 1111
Score = 48 (22.0 bits), Expect = 1.4e-57, Sum P(2) = 1.4e-57
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 159 SQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
S YN G + +S+ P + PSQGP P P ++ GSS ++ ++ G G
Sbjct: 730 SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 782
Score = 39 (18.8 bits), Expect = 1.2e-56, Sum P(2) = 1.2e-56
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 533 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 587
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 588 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPNNNLASS 643
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 644 SFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 698
Score = 37 (18.1 bits), Expect = 2.0e-56, Sum P(2) = 2.0e-56
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 735 LSFSSSPGPVG 745
>UNIPROTKB|Q5T1Z4 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461 HOVERGEN:HBG049462
OrthoDB:EOG4P8FHP EMBL:AL356320 EMBL:AL445235 UniGene:Hs.281707
HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00646054 SMR:Q5T1Z4
STRING:Q5T1Z4 Ensembl:ENST00000373747 UCSC:uc001bsf.1
Uniprot:Q5T1Z4
Length = 1189
Score = 582 (209.9 bits), Expect = 1.4e-57, Sum P(2) = 1.4e-57
Identities = 113/187 (60%), Positives = 142/187 (75%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 828 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 887
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 888 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 947
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 948 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 1007
Query: 560 YGCRVIQ 566
YGCRVIQ
Sbjct: 1008 YGCRVIQ 1014
Score = 243 (90.6 bits), Expect = 7.5e-17, Sum P(2) = 7.5e-17
Identities = 59/173 (34%), Positives = 92/173 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L++ I G ++ ++ +G R IQ+ LE ++++V + +E+ H K + D G
Sbjct: 914 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 973
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 974 NHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELH 1033
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
H + V+DQ GN+VIQ +E E I++ RG V LS H + V++
Sbjct: 1034 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1086
Score = 235 (87.8 bits), Expect = 5.8e-16, Sum P(2) = 5.8e-16
Identities = 50/175 (28%), Positives = 94/175 (53%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC ++ + + +E+ H +L+ D +GNYVI
Sbjct: 990 QFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVI 1049
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G VL LS + V++K + +++ L+ E+ D
Sbjct: 1050 QHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMND 1109
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ + + ++ R +ATL + YG ++
Sbjct: 1110 GPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 1164
Score = 143 (55.4 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 41/158 (25%), Positives = 75/158 (47%)
Query: 403 DIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFE 462
++ G +++ DQ+G+ +Q+ +E + + L T +G VIQ+ E
Sbjct: 959 ELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILE 1018
Query: 463 HGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRD 522
H PDQ + E+L L YG VIQ LE KS++V E+ G+V+ +
Sbjct: 1019 HCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQH 1078
Query: 523 QNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 560
+ ++V++KC+ A + E + +V T++ P+
Sbjct: 1079 KFASNVVEKCV--THASRTERAVLI--DEVCTMNDGPH 1112
Score = 48 (22.0 bits), Expect = 1.4e-57, Sum P(2) = 1.4e-57
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 159 SQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
S YN G + +S+ P + PSQGP P P ++ GSS ++ ++ G G
Sbjct: 731 SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 783
Score = 39 (18.8 bits), Expect = 1.2e-56, Sum P(2) = 1.2e-56
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 534 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 588
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 589 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPNNNLASS 644
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 645 SFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 699
Score = 37 (18.1 bits), Expect = 2.0e-56, Sum P(2) = 2.0e-56
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 736 LSFSSSPGPVG 746
>UNIPROTKB|E2QVA9 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 CTD:9698 RefSeq:XP_852168.1
Ensembl:ENSCAFT00000017823 GeneID:478158 KEGG:cfa:478158
NextBio:20853526 Uniprot:E2QVA9
Length = 1224
Score = 582 (209.9 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 113/187 (60%), Positives = 142/187 (75%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 863 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 922
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 923 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 982
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 983 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 1042
Query: 560 YGCRVIQ 566
YGCRVIQ
Sbjct: 1043 YGCRVIQ 1049
Score = 243 (90.6 bits), Expect = 8.1e-17, Sum P(2) = 8.1e-17
Identities = 59/173 (34%), Positives = 92/173 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L++ I G ++ ++ +G R IQ+ LE ++++V + +E+ H K + D G
Sbjct: 949 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 1008
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 1009 NHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELH 1068
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
H + V+DQ GN+VIQ +E E I++ RG V LS H + V++
Sbjct: 1069 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1121
Score = 238 (88.8 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 52/176 (29%), Positives = 97/176 (55%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC ++ + + +E+ H +L+ D +GNYVI
Sbjct: 1025 QFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVI 1084
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G VL LS + V++K + +++ L+ E+ D
Sbjct: 1085 QHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMND 1144
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ PA++ + ++ R +ATL + YG ++
Sbjct: 1145 GPHSALYTMMKDQYANYVVQKMIDVAEPAQR-KIVMHKIRPHIATLRKYTYGKHIL 1199
Score = 143 (55.4 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 41/158 (25%), Positives = 75/158 (47%)
Query: 403 DIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFE 462
++ G +++ DQ+G+ +Q+ +E + + L T +G VIQ+ E
Sbjct: 994 ELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILE 1053
Query: 463 HGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRD 522
H PDQ + E+L L YG VIQ LE KS++V E+ G+V+ +
Sbjct: 1054 HCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQH 1113
Query: 523 QNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 560
+ ++V++KC+ A + E + +V T++ P+
Sbjct: 1114 KFASNVVEKCV--THASRTERAVLI--DEVCTMNDGPH 1147
Score = 48 (22.0 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 159 SQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
S YN G + +S+ P + PSQGP P P ++ GSS ++ ++ G G
Sbjct: 766 SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 818
Score = 39 (18.8 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 569 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 623
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 624 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPSNSLASS 679
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 680 SFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 734
Score = 37 (18.1 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 771 LSFSSSPGPVG 781
>UNIPROTKB|Q5T1Z8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1 (Drosophila), isoform CRA_c"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00032355
SMR:Q5T1Z8 STRING:Q5T1Z8 Ensembl:ENST00000373741 UCSC:uc001bsk.1
Uniprot:Q5T1Z8
Length = 1224
Score = 582 (209.9 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 113/187 (60%), Positives = 142/187 (75%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 863 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 922
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 923 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 982
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 983 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 1042
Query: 560 YGCRVIQ 566
YGCRVIQ
Sbjct: 1043 YGCRVIQ 1049
Score = 243 (90.6 bits), Expect = 8.1e-17, Sum P(2) = 8.1e-17
Identities = 59/173 (34%), Positives = 92/173 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L++ I G ++ ++ +G R IQ+ LE ++++V + +E+ H K + D G
Sbjct: 949 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 1008
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 1009 NHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELH 1068
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
H + V+DQ GN+VIQ +E E I++ RG V LS H + V++
Sbjct: 1069 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1121
Score = 235 (87.8 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 50/175 (28%), Positives = 94/175 (53%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC ++ + + +E+ H +L+ D +GNYVI
Sbjct: 1025 QFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVI 1084
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G VL LS + V++K + +++ L+ E+ D
Sbjct: 1085 QHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMND 1144
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ + + ++ R +ATL + YG ++
Sbjct: 1145 GPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 1199
Score = 143 (55.4 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 41/158 (25%), Positives = 75/158 (47%)
Query: 403 DIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFE 462
++ G +++ DQ+G+ +Q+ +E + + L T +G VIQ+ E
Sbjct: 994 ELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILE 1053
Query: 463 HGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRD 522
H PDQ + E+L L YG VIQ LE KS++V E+ G+V+ +
Sbjct: 1054 HCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQH 1113
Query: 523 QNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 560
+ ++V++KC+ A + E + +V T++ P+
Sbjct: 1114 KFASNVVEKCV--THASRTERAVLI--DEVCTMNDGPH 1147
Score = 48 (22.0 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 159 SQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
S YN G + +S+ P + PSQGP P P ++ GSS ++ ++ G G
Sbjct: 766 SFYN--GLSFSSSPGPVGMP-LPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 818
Score = 39 (18.8 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 569 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 623
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 624 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPNNNLASS 679
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 680 SFYGNNSLNSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 734
Score = 37 (18.1 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 38 VSFSSSPCPDG 48
+SFSSSP P G
Sbjct: 771 LSFSSSPGPVG 781
>UNIPROTKB|Q2VB19 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HSSP:Q14671 EMBL:DQ275191 EMBL:AJ851393 IPI:IPI00581936
IPI:IPI00682137 RefSeq:NP_001012858.1 UniGene:Gga.22920
ProteinModelPortal:Q2VB19 SMR:Q2VB19 Ensembl:ENSGALT00000000834
Ensembl:ENSGALT00000035201 GeneID:419554 KEGG:gga:419554 CTD:9698
HOGENOM:HOG000238461 HOVERGEN:HBG049462 InParanoid:Q2VB19
OMA:RHVVGVK OrthoDB:EOG4P8FHP NextBio:20822590 Uniprot:Q2VB19
Length = 1189
Score = 581 (209.6 bits), Expect = 1.8e-57, Sum P(2) = 1.8e-57
Identities = 113/187 (60%), Positives = 142/187 (75%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 828 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 887
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 888 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 947
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 948 PDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 1007
Query: 560 YGCRVIQ 566
YGCRVIQ
Sbjct: 1008 YGCRVIQ 1014
Score = 243 (90.6 bits), Expect = 7.5e-17, Sum P(2) = 7.5e-17
Identities = 53/176 (30%), Positives = 97/176 (55%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC E+ + + +E+ H +L+ D +GNYVI
Sbjct: 990 QFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTLPILEELHQHTEQLVQDQYGNYVI 1049
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G VL LS + V++K + +++ L+ E+ D
Sbjct: 1050 QHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAMLIDEVCTMND 1109
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ PA++ + ++ R +ATL + YG ++
Sbjct: 1110 GPHSALYTMMKDQYANYVVQKMIDVAEPAQR-KIVMHKIRPHIATLRKYTYGKHIL 1164
Score = 242 (90.2 bits), Expect = 9.6e-17, Sum P(2) = 9.6e-17
Identities = 59/173 (34%), Positives = 91/173 (52%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L++ I G ++ ++ +G R IQ+ LE +++V + +E+ H K + D G
Sbjct: 914 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQVINEMVRELDGHVLKCVKDQNG 973
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 974 NHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTLPILEELH 1033
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
H + V+DQ GN+VIQ +E E I++ RG V LS H + V++
Sbjct: 1034 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1086
Score = 139 (54.0 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 39/158 (24%), Positives = 74/158 (46%)
Query: 403 DIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFE 462
++ G +++ DQ+G+ +Q+ +E + + L T +G VIQ+ E
Sbjct: 959 ELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILE 1018
Query: 463 HGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRD 522
H P+Q + E+L L YG VIQ LE KS++V E+ G+V+ +
Sbjct: 1019 HCLPEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQH 1078
Query: 523 QNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 560
+ ++V++KC+ + +I +V T++ P+
Sbjct: 1079 KFASNVVEKCVTHASRTERAMLID----EVCTMNDGPH 1112
Score = 48 (22.0 bits), Expect = 1.8e-57, Sum P(2) = 1.8e-57
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 159 SQYNVGGYALNSALFPPFVAGYPSQGP----VPMPFDATSGSSFNIRTTSVSTGEG 210
S YN G++ + P PSQGP P P ++ GSS ++ ++ G G
Sbjct: 731 SFYNGLGFSSSPG---PVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNGSG 783
Score = 39 (18.8 bits), Expect = 1.6e-56, Sum P(2) = 1.6e-56
Identities = 36/175 (20%), Positives = 63/175 (36%)
Query: 129 MNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPM 188
+N+A G + +G P YP P+ Y Q G +N+ A P P+
Sbjct: 534 VNSALAFGQGLAAGMPGYPVLAPAA---YYDQ--TGALVVNAGARNGLGAPVRLVAPAPV 588
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFG 248
++S + + + S + T + F + L Q P P
Sbjct: 589 II-SSSAAQAAVAAAAASANGAAGGLAGTTNGPF---RPLGTQQPQPQPQQQPTNNLASS 644
Query: 249 DAY-NASVQHRLASSGV-NGALADPSSKKEPIVAAYMGDQNLQSSLNG-GPSISN 300
Y N S+ SS + + A P++ ++ L S+L G G +++N
Sbjct: 645 SFYGNNSLSSNSQSSSLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVAN 699
>UNIPROTKB|H0YEH2 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525843 Uniprot:H0YEH2
Length = 1125
Score = 593 (213.8 bits), Expect = 1.0e-56, P = 1.0e-56
Identities = 113/185 (61%), Positives = 142/185 (76%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 766 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 825
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 826 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 885
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 886 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 945
Query: 562 CRVIQ 566
CRVIQ
Sbjct: 946 CRVIQ 950
Score = 247 (92.0 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 58/171 (33%), Positives = 91/171 (53%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L++ I G ++ ++ +G R IQ+ LE ++++ + +E+ H K + D GN+
Sbjct: 852 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNH 911
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 912 VVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQH 971
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ V+DQ GN+VIQ +E E I++ RG V LS H + V++
Sbjct: 972 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1022
Score = 235 (87.8 bits), Expect = 4.6e-16, P = 4.6e-16
Identities = 50/175 (28%), Positives = 94/175 (53%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC ++ + + +E+ H +L+ D +GNYVI
Sbjct: 926 QFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVI 985
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G VL LS + V++K + +++ L+ E+ D
Sbjct: 986 QHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMND 1045
Query: 514 G-H--VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G H + ++DQ N+V+QK I+ + + ++ R +ATL + YG ++
Sbjct: 1046 GPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 1100
Score = 148 (57.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 44/171 (25%), Positives = 80/171 (46%)
Query: 390 ELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMT 449
E S+ Q + ++ G +++ DQ+G+ +Q+ +E + + L T
Sbjct: 882 EFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALST 941
Query: 450 DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 509
+G VIQ+ EH PDQ + E+L L YG VIQ LE KS++V
Sbjct: 942 HPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIV 1001
Query: 510 LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 560
E+ G+V+ + + ++V++KC+ A + E + +V T++ P+
Sbjct: 1002 AEIRGNVLVLSQHKFASNVVEKCV--THASRTERAVLI--DEVCTMNDGPH 1048
>WB|WBGene00004245 [details] [associations]
symbol:puf-9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040017 "positive regulation of locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0002009 GO:GO:0005737 GO:GO:0040010 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0040017 GO:GO:0003730 GO:GO:0006402 EMBL:FO081143
eggNOG:COG5099 HSSP:Q14671 GeneTree:ENSGT00680000100664 PIR:T26218
RefSeq:NP_508980.2 ProteinModelPortal:Q23191 SMR:Q23191
STRING:Q23191 PaxDb:Q23191 EnsemblMetazoa:W06B11.2.1
EnsemblMetazoa:W06B11.2.2 GeneID:180850 KEGG:cel:CELE_W06B11.2
UCSC:W06B11.2 CTD:180850 WormBase:W06B11.2 HOGENOM:HOG000020400
InParanoid:Q23191 OMA:TIKPHIA NextBio:911254 Uniprot:Q23191
Length = 703
Score = 516 (186.7 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 111/226 (49%), Positives = 149/226 (65%)
Query: 354 PQGLNRNTGIYSGWQGQRTF--EGQRTFEDSKKHSFLEEL------KSSNAQKFE-LSDI 404
P G+ N G+ + W QR+F Q+ ++ +F + + N Q + L DI
Sbjct: 286 PNGMG-NGGVMNDWS-QRSFGMPQQQAQQNGLPPNFSQNPPRRRGPEDPNGQTPKTLQDI 343
Query: 405 AGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHG 464
++EF+ DQHGSRFIQQKLE S +K ++F VL +A +LMTDVFGNYVIQKFFE G
Sbjct: 344 KNNVIEFAKDQHGSRFIQQKLERASLRDKAAIFTPVLENAEELMTDVFGNYVIQKFFEFG 403
Query: 465 SPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQN 524
+ +QR +L + G V+ L+LQMYGCRVIQKALE +E + +++ E++G V++CV+DQN
Sbjct: 404 NNEQRNQLVGTIRGNVMKLALQMYGCRVIQKALEYVEEKYQHEILGEMEGQVLKCVKDQN 463
Query: 525 GNHVIQKCIECVPAEKIEFIISAFR----GQVATLSTHPYGCRVIQ 566
GNHVIQK IE V E+++FII AF V TLS HPYGCRVIQ
Sbjct: 464 GNHVIQKVIERVEPERLQFIIDAFTKNNSDNVYTLSVHPYGCRVIQ 509
Score = 189 (71.6 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 44/167 (26%), Positives = 87/167 (52%)
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPD 467
+ SV +G R IQ+ LE+C+ E+K V + H +L+ D +GNYVIQ EHGSP
Sbjct: 495 VYTLSVHPYGCRVIQRVLEYCNEEQKQPVLDALQIHLKQLVLDQYGNYVIQHVIEHGSPS 554
Query: 468 QRKELAEKLVGQ-VLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL---DGH-----VMR 518
++++ + ++ +L + + VI+K L H + L+++ D + +++
Sbjct: 555 DKEQIVQDVISDDLLKFAQHKFASNVIEKCL-TFGGHAERNLIIDKVCGDPNDPSPPLLQ 613
Query: 519 CVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
++D N+V+QK ++ + + I + +ATL + +G ++
Sbjct: 614 MMKDPFANYVVQKMLDVADPQHRKKITLTIKPHIATLRKYNFGKHIL 660
Score = 37 (18.1 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 269 ADPSSKKEPIVAAYMGDQNLQSSLNG 294
ADPS+ + A ++ ++N NG
Sbjct: 157 ADPSNGMPGMAAEFVNNENGMPGPNG 182
>SGD|S000003936 [details] [associations]
symbol:PUF3 "Protein of the mitochondrial outer surface"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=IDA] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0032473
"external side of mitochondrial outer membrane" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IMP] [GO:0051646
"mitochondrion localization" evidence=IMP] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009060 "aerobic respiration"
evidence=IMP] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0016020 "membrane" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SGD:S000003936 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0005741 GO:GO:0003729
EMBL:BK006945 GO:GO:0009060 GO:GO:0007005 GO:GO:0008298
GO:GO:0000288 EMBL:X97560 EMBL:X91488 GO:GO:0051646 eggNOG:COG5099
GO:GO:0032473 OrthoDB:EOG4RR9RJ EMBL:Z73117 EMBL:Z73118 PIR:S64755
RefSeq:NP_013088.1 PDB:3K49 PDB:3K4E PDBsum:3K49 PDBsum:3K4E
ProteinModelPortal:Q07807 SMR:Q07807 DIP:DIP-4449N IntAct:Q07807
MINT:MINT-552454 STRING:Q07807 PaxDb:Q07807 PeptideAtlas:Q07807
EnsemblFungi:YLL013C GeneID:850647 KEGG:sce:YLL013C CYGD:YLL013c
GeneTree:ENSGT00680000100664 OMA:FIPYLIQ EvolutionaryTrace:Q07807
NextBio:966590 Genevestigator:Q07807 GermOnline:YLL013C
Uniprot:Q07807
Length = 879
Score = 503 (182.1 bits), Expect = 3.8e-51, Sum P(2) = 3.8e-51
Identities = 112/243 (46%), Positives = 150/243 (61%)
Query: 330 ASPVLPSS-PVGSTSQLGLRHEMRLPQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSFL 388
A+P L +S P +TS+ + N + +S Q + Q+T+ S L
Sbjct: 462 ANPYLENSIPTKNTSKKNASSKSNESTANNHKSHSHSHPHSQSLQQQQQTYHRSP---LL 518
Query: 389 EELKSSNAQK-----FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPH 443
E+L++S++ K L DI G +EF DQHGSRFIQ++L A EK +F E+
Sbjct: 519 EQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDD 578
Query: 444 ASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELH 503
A +L DVFGNYVIQKFFE GS Q+ L ++ G + LSLQMY CRVIQKALE I+ +
Sbjct: 579 AIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSN 638
Query: 504 QKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCR 563
Q+ +LVLEL V++ ++DQNGNHVIQK IE +P EK+ FI+S+ G + LSTH YGCR
Sbjct: 639 QRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCR 698
Query: 564 VIQ 566
VIQ
Sbjct: 699 VIQ 701
Score = 188 (71.2 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 50/180 (27%), Positives = 85/180 (47%)
Query: 394 SNAQKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVF 452
S QK L D G + + S+ + R IQ+ LE+ + +++ + E+ +++ D
Sbjct: 600 SKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQN 659
Query: 453 GNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL 512
GN+VIQK E ++ + L G + LS YGCRVIQ+ LE + ++ EL
Sbjct: 660 GNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNEL 719
Query: 513 DGHVMRCVRDQNGNHVIQKCIE---CVPAEKIEF---IISAFRGQVATLSTHPYGCRVIQ 566
+ ++DQ GN+VIQ ++ E ++ II V S H + V++
Sbjct: 720 KDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVVE 779
Score = 169 (64.5 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 55/190 (28%), Positives = 91/190 (47%)
Query: 380 EDSKKHSFLE-ELKSSNAQKFEL--SDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
+D F++ EL +S A + E+ ++I +E S D G+ IQ+ E S +K ++
Sbjct: 548 KDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTL 607
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+ + +L ++ VIQK E+ +QR EL +L VL + G VIQKA
Sbjct: 608 VDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKA 667
Query: 497 LEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLS 556
+E I + + ++ L GH+ G VIQ+ +E +E E I++ + + L
Sbjct: 668 IETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLI 727
Query: 557 THPYGCRVIQ 566
YG VIQ
Sbjct: 728 QDQYGNYVIQ 737
Score = 60 (26.2 bits), Expect = 3.8e-51, Sum P(2) = 3.8e-51
Identities = 29/93 (31%), Positives = 41/93 (44%)
Query: 126 SLGMNNAH--NAGTYMPSGNP-FYPSFQPSGAGV----YPSQYNVGGYALNSALFPPFVA 178
SL NAH + + P F PS P+ G P+Q + G A N+ FPP++
Sbjct: 252 SLESENAHYPKRNIWNVANTPVFRPSNNPAAVGATNVALPNQQD--GPANNN--FPPYMN 307
Query: 179 GYPS----QGPVPMPF-DATSGSSFNIRTTSVS 206
G+P QGP F + GS N + +S
Sbjct: 308 GFPPNQFHQGPHYQNFPNYLIGSPSNFISQMIS 340
Score = 50 (22.7 bits), Expect = 4.3e-50, Sum P(2) = 4.3e-50
Identities = 26/105 (24%), Positives = 40/105 (38%)
Query: 193 TSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFGDAYN 252
+S SS + T++S G P ST +KF+G+ G Q D + + N
Sbjct: 73 SSESSPIFKKTALSVGTAPPF--STNSKKFFGNGGNYYQYRSTDTASLSSASYN-----N 125
Query: 253 ASVQHRLASSGVNGALADPSSKKEPIVAA---YMGDQNLQSSLNG 294
H A+ G N + + +A Y G+ N S G
Sbjct: 126 YHTHHTAANLGKNNKVNHLLGQYSASIAGPVYYNGNDNNNSGGEG 170
Score = 40 (19.1 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 24/103 (23%), Positives = 39/103 (37%)
Query: 134 NAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNS----ALFPPFVAG-YPSQGPVPM 188
N Y P+ NP P P + + N A NS P++ P++
Sbjct: 420 NPYIYYPTPNPI-PVKMPKDEKTFKKRNNKNHPANNSNNANKQANPYLENSIPTKNTSKK 478
Query: 189 PFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQ 231
+A+S S+ + S PH S Q Q+ H+ +L+
Sbjct: 479 --NASSKSNESTANNHKSHSHSHPHSQSLQQQQQTYHRSPLLE 519
>POMBASE|SPAC1687.22c [details] [associations]
symbol:puf3 "RNA-binding protein Puf3 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0033554
"cellular response to stress" evidence=IEP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC1687.22c GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0005741 GO:GO:0033554 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 RefSeq:NP_593141.2 HSSP:Q14671
ProteinModelPortal:O94462 SMR:O94462 EnsemblFungi:SPAC1687.22c.1
GeneID:2542300 KEGG:spo:SPAC1687.22c OrthoDB:EOG4RR9RJ
NextBio:20803362 Uniprot:O94462
Length = 732
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 100/175 (57%), Positives = 128/175 (73%)
Query: 394 SNAQK-FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHAS-KLMTDV 451
+N Q+ FELSDI G +V FS DQHGSRFIQQKL + EE+ +VF+E+ + +LM D+
Sbjct: 386 ANKQRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMDI 445
Query: 452 FGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE 511
FGNYV+QK+FE G+ Q++ L ++ G V LSLQMYGCRV+QKA+E I + QL+ E
Sbjct: 446 FGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLIQE 505
Query: 512 LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
LDGHV+ CV DQNGNHVIQK IEC+ ++FI+ A R Q+ LS HPYGCRVIQ
Sbjct: 506 LDGHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQ 560
Score = 221 (82.9 bits), Expect = 8.2e-15, P = 8.2e-15
Identities = 52/178 (29%), Positives = 90/178 (50%)
Query: 390 ELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMT 449
E + ++ LS I G + S+ +G R +Q+ +E+ S E +V + +E+ H +
Sbjct: 456 EFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLIQELDGHVLDCVC 515
Query: 450 DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 509
D GN+VIQK E + + L Q+ LS YGCRVIQ+A+E H + +L+
Sbjct: 516 DQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRAIE--HCHSERKLI 573
Query: 510 LE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+E L H+++ +DQ GN+V+Q + ++I + LS H + V++
Sbjct: 574 IEELLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCHKFASNVVE 631
Score = 211 (79.3 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 49/175 (28%), Positives = 95/175 (54%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F L + +I S +G R IQ+ +EHC +E K+ + +E+LPH KL D +GNYV+
Sbjct: 536 QFILRALRPQIHVLSAHPYGCRVIQRAIEHCHSERKL-IIEELLPHILKLTQDQYGNYVV 594
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVI-ELHQK---SQLVLELD 513
Q GS +K + + ++ +L LS + V+++ + I ++ ++ ++++ E
Sbjct: 595 QHILRTGSESDKKYIFDLMIDHLLFLSCHKFASNVVERCISYISDVDRRRILNKIISEKA 654
Query: 514 GH---VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
+ +M ++D+ N+VIQK ++ P E+ + +IS ++ L YG +I
Sbjct: 655 ENCSILMLMMKDKYANYVIQKLLDASPEEERDLLISYIYPHISVLKKFTYGKHLI 709
Score = 149 (57.5 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 48/190 (25%), Positives = 89/190 (46%)
Query: 381 DSKKHSFLEE-LKSSNAQKFE--LSDIAGR-IVEFSVDQHGSRFIQQKLEHCSAEEKVSV 436
D F+++ L ++ ++ E +IA ++ +D G+ +Q+ E + ++K +
Sbjct: 407 DQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMDIFGNYVVQKYFEFGNEKQKQIL 466
Query: 437 FKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
++ H L ++G V+QK E+ SP+ + +L ++L G VL G VIQKA
Sbjct: 467 LSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLIQELDGHVLDCVCDQNGNHVIQKA 526
Query: 497 LEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLS 556
+E I+ ++ L + G VIQ+ IE +E+ + II + L+
Sbjct: 527 IECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRAIEHCHSER-KLIIEELLPHILKLT 585
Query: 557 THPYGCRVIQ 566
YG V+Q
Sbjct: 586 QDQYGNYVVQ 595
Score = 132 (51.5 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 41/159 (25%), Positives = 71/159 (44%)
Query: 413 VDQHGSRFIQQK----LEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQ 468
++Q+G F+QQ L H + + + ++L + TD G+ IQ+ + ++
Sbjct: 367 INQNGQEFLQQSRVLYLFHANKQRHFEL-SDILGNVVLFSTDQHGSRFIQQKLATATEEE 425
Query: 469 RKELAEKLVG-QVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNH 527
R+ + +++ L L + ++G V+QK E QK L+ ++ GHV G
Sbjct: 426 REAVFQEIASTSCLQLMMDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCR 485
Query: 528 VIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
V+QK IE + E +I G V G VIQ
Sbjct: 486 VVQKAIEYISPEHQVQLIQELDGHVLDCVCDQNGNHVIQ 524
>CGD|CAL0000998 [details] [associations]
symbol:PUF3 species:5476 "Candida albicans" [GO:0032473
"external side of mitochondrial outer membrane" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0008298 "intracellular
mRNA localization" evidence=IEA] [GO:0051646 "mitochondrion
localization" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IEA]
[GO:0009060 "aerobic respiration" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0000998 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099 EMBL:AACQ01000198
EMBL:AACQ01000197 RefSeq:XP_711443.1 RefSeq:XP_711460.1
ProteinModelPortal:Q59P09 GeneID:3646939 GeneID:3646950
KEGG:cal:CaO19.1795 KEGG:cal:CaO19.9361 Uniprot:Q59P09
Length = 929
Score = 506 (183.2 bits), Expect = 7.3e-49, Sum P(2) = 7.3e-49
Identities = 103/217 (47%), Positives = 147/217 (67%)
Query: 358 NRNTGIYSGWQGQR--TFEGQR-TFEDSKKHSF----LEELKSSNAQKFELSDIAGRIVE 410
N ++G G +R F+G+ T H + LEE++S N + ++L DI G +E
Sbjct: 533 NNSSGSTPGVGSKRKGNFKGKNNTTNGGGNHIYRSPLLEEVRS-NPKPYQLKDIYGHAIE 591
Query: 411 FSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRK 470
F+ DQHGSRFIQQKL + EEK ++F E+ + +LMTDVFGNYVIQK+FE+G+ Q++
Sbjct: 592 FTKDQHGSRFIQQKLPEATEEEKETIFNEIWEISYELMTDVFGNYVIQKYFEYGTTTQKQ 651
Query: 471 ELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQ 530
L E ++G + LSLQMYGCRV+Q+ALE I+ + +++ EL H++ C +DQNGNHVIQ
Sbjct: 652 VLLESMIGHIHELSLQMYGCRVVQRALEAIDNEGQLRIIEELKDHILICCKDQNGNHVIQ 711
Query: 531 KCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
K IE + P +I +I+++ Q+ LSTHPYGCRVIQ
Sbjct: 712 KSIEKIKPFSQIRYILTSLDNQIYHLSTHPYGCRVIQ 748
Score = 221 (82.9 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 55/178 (30%), Positives = 89/178 (50%)
Query: 390 ELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMT 449
E ++ ++ L + G I E S+ +G R +Q+ LE E ++ + +E+ H
Sbjct: 643 EYGTTTQKQVLLESMIGHIHELSLQMYGCRVVQRALEAIDNEGQLRIIEELKDHILICCK 702
Query: 450 DVFGNYVIQKFFEHGSP-DQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQL 508
D GN+VIQK E P Q + + L Q+ LS YGCRVIQ+ LE ++ + +
Sbjct: 703 DQNGNHVIQKSIEKIKPFSQIRYILTSLDNQIYHLSTHPYGCRVIQRLLEYSDIDDQKLI 762
Query: 509 VLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ +L+ + + DQ GN+VIQ +E E+ E I+ G V S H + VI+
Sbjct: 763 LSQLNNFLYYLILDQYGNYVIQHILENGTQEEKEPILEIVLGSVVQFSKHKFASNVIE 820
Score = 156 (60.0 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 30/125 (24%), Positives = 72/125 (57%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
+E++K + ++ L+ + +I S +G R IQ+ LE+ +++ + ++ L
Sbjct: 714 IEKIKPFSQIRYILTSLDNQIYHLSTHPYGCRVIQRLLEYSDIDDQKLILSQLNNFLYYL 773
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 507
+ D +GNYVIQ E+G+ ++++ + E ++G V+ S + VI+K ++ +++Q+ +
Sbjct: 774 ILDQYGNYVIQHILENGTQEEKEPILEIVLGSVVQFSKHKFASNVIEKCIKFGDINQRKR 833
Query: 508 LVLEL 512
++ E+
Sbjct: 834 ILHEV 838
Score = 37 (18.1 bits), Expect = 7.3e-49, Sum P(2) = 7.3e-49
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 177 VAGYPSQGPVPMPFDATSGSSFNIRTTSV-STGEGIPHIGSTQHQKFYGH 225
+ Y + P+ + S N T ++ ST H +T++Q Y H
Sbjct: 219 IDNYNNNSPIQTAAALSINSDLNSDTVNINSTTTNSNH-DATKNQGNYSH 267
>UNIPROTKB|H0YC97 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000529846 Bgee:H0YC97 Uniprot:H0YC97
Length = 227
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 95/149 (63%), Positives = 117/149 (78%)
Query: 405 AGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHG 464
AG I+EFS DQHGSRFIQ KLE + E+ VF E+L A +LM DVFGNYVIQKFFE G
Sbjct: 1 AGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFG 60
Query: 465 SPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQK--SQLVLELDGHVMRCVRD 522
S +Q+ LAE++ G VL L+LQMYGCRVIQKALE I Q+ +++V ELDGHV++CV+D
Sbjct: 61 SLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 120
Query: 523 QNGNHVIQKCIECVPAEKIEFIISAFRGQ 551
QNGNHV+QKCIECV + ++FII AF+GQ
Sbjct: 121 QNGNHVVQKCIECVQPQSLQFIIDAFKGQ 149
Score = 170 (64.9 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 56/194 (28%), Positives = 90/194 (46%)
Query: 380 EDSKKHSFLEELKSSNAQKFE----LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS 435
+D F++ LK A E ++I + VD G+ IQ+ E S E+K++
Sbjct: 9 QDQHGSRFIQ-LKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLA 67
Query: 436 VFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQR--KELAEKLVGQVLPLSLQMYGCRVI 493
+ + + H L ++G VIQK E DQ+ E+ +L G VL G V+
Sbjct: 68 LAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVV 127
Query: 494 QKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQV 552
QK +E ++ Q Q +++ G +DQ GN+VIQ +E E I++ RG V
Sbjct: 128 QKCIECVQ-PQSLQFIIDAFKG------QDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNV 180
Query: 553 ATLSTHPYGCRVIQ 566
LS H + V++
Sbjct: 181 LVLSQHKFASNVVE 194
Score = 156 (60.0 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 46/167 (27%), Positives = 85/167 (50%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L++ I G ++ ++ +G R IQ+ LE ++++V + +E+ H K + D G
Sbjct: 64 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 123
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQ YG VIQ LE KS++V E+
Sbjct: 124 NHVVQKCIECVQPQSLQFIIDAFKGQ------DQYGNYVIQHVLEHGRPEDKSKIVAEIR 177
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 560
G+V+ + + ++V++KC+ A + E + +V T++ P+
Sbjct: 178 GNVLVLSQHKFASNVVEKCV--THASRTERAVLI--DEVCTMNDGPH 220
>ASPGD|ASPL0000000865 [details] [associations]
symbol:AN6587 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000110 eggNOG:COG5099 OrthoDB:EOG4RR9RJ
RefSeq:XP_664191.1 ProteinModelPortal:Q5AYP3
EnsemblFungi:CADANIAT00007365 GeneID:2870653 KEGG:ani:AN6587.2
HOGENOM:HOG000201252 OMA:SHKSSPQ Uniprot:Q5AYP3
Length = 849
Score = 472 (171.2 bits), Expect = 9.8e-46, Sum P(2) = 9.8e-46
Identities = 90/170 (52%), Positives = 122/170 (71%)
Query: 397 QKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYV 456
++FEL DI G IVEFS DQ+GSRF+QQK+E +++EK VF+E+LP+ +L D+FGNYV
Sbjct: 453 KRFELKDIYGHIVEFSGDQYGSRFLQQKIETANSDEKDRVFREILPNFLQLAQDIFGNYV 512
Query: 457 IQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHV 516
QK +EHG+ Q+K + E + +V+ LSL YGCRV+QKALE + Q++ LV E+ V
Sbjct: 513 AQKLYEHGNQTQKKMMTEDMRSKVVKLSLSPYGCRVVQKALEHVLTDQQAWLVREIQPQV 572
Query: 517 MRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ CV Q+GNHVIQK E VP + + ++ +FRGQV STH YGCRVIQ
Sbjct: 573 LECVESQHGNHVIQKVFEYVPTQYTKGLVDSFRGQVERQSTHSYGCRVIQ 622
Score = 239 (89.2 bits), Expect = 5.3e-16, Sum P(2) = 5.3e-16
Identities = 54/179 (30%), Positives = 90/179 (50%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
L E + +K D+ ++V+ S+ +G R +Q+ LEH +++ + +E+ P +
Sbjct: 516 LYEHGNQTQKKMMTEDMRSKVVKLSLSPYGCRVVQKALEHVLTDQQAWLVREIQPQVLEC 575
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 507
+ GN+VIQK FE+ K L + GQV S YGCRVIQ+ LE E +
Sbjct: 576 VESQHGNHVIQKVFEYVPTQYTKGLVDSFRGQVERQSTHSYGCRVIQRMLEFCEDVDRRF 635
Query: 508 LVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
++ E+ R + DQ GN+VIQ I+ E F+I + ++ S H + V++
Sbjct: 636 ILAEIRACAPRLIEDQYGNYVIQHIIQSGEEEDRSFMIEMVKQKLLWYSKHKFASNVVE 694
Score = 161 (61.7 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 38/135 (28%), Positives = 69/135 (51%)
Query: 406 GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGS 465
G++ S +G R IQ+ LE C ++ + E+ A +L+ D +GNYVIQ + G
Sbjct: 606 GQVERQSTHSYGCRVIQRMLEFCEDVDRRFILAEIRACAPRLIEDQYGNYVIQHIIQSGE 665
Query: 466 PDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----DGH---VMR 518
+ R + E + ++L S + V++K++E Q+ ++ L +GH ++
Sbjct: 666 EEDRSFMIEMVKQKLLWYSKHKFASNVVEKSIEFGNEAQRQDIITRLTAKTEGHETQLIE 725
Query: 519 CVRDQNGNHVIQKCI 533
+ DQ GN+V QK +
Sbjct: 726 LMADQYGNYVFQKVL 740
Score = 158 (60.7 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 55/192 (28%), Positives = 90/192 (46%)
Query: 387 FLEE-LKSSNAQKFE--LSDIAGRIVEFSVDQHGSRFIQQKL-EHCSAEEKVSVFKEVLP 442
FL++ ++++N+ + + +I ++ + D G+ ++ QKL EH + +K + +++
Sbjct: 476 FLQQKIETANSDEKDRVFREILPNFLQLAQDIFGN-YVAQKLYEHGNQTQKKMMTEDMRS 534
Query: 443 HASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIEL 502
KL +G V+QK EH DQ+ L ++ QVL +G VIQK E +
Sbjct: 535 KVVKLSLSPYGCRVVQKALEHVLTDQQAWLVREIQPQVLECVESQHGNHVIQKVFEYVPT 594
Query: 503 HQKSQLVLELDGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQVATLSTHPYG 561
LV G V R G VIQ+ +E C ++ FI++ R L YG
Sbjct: 595 QYTKGLVDSFRGQVERQSTHSYGCRVIQRMLEFCEDVDR-RFILAEIRACAPRLIEDQYG 653
Query: 562 CRVIQPHNNASG 573
VIQ H SG
Sbjct: 654 NYVIQ-HIIQSG 664
Score = 40 (19.1 bits), Expect = 9.8e-46, Sum P(2) = 9.8e-46
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 337 SPVGSTSQLGLRHEMRLPQGLNRNTGIYSGWQGQRTFEGQRTF 379
SP G TS +G R + R+ G+ +G G + Q F
Sbjct: 135 SPAGETSAMGNR--VLFNNNDRRSVGL-TGTAGTAAYPAQSGF 174
>WB|WBGene00004244 [details] [associations]
symbol:puf-8 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0007276 "gamete
generation" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0040022 "feminization of hermaphroditic
germ-line" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007140 "male meiosis" evidence=IMP] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0007283 GO:GO:0003723
GO:GO:0042127 GO:GO:0007140 GO:GO:0040027 GO:GO:0040020
GO:GO:0040022 GO:GO:0043186 eggNOG:COG5099
GeneTree:ENSGT00680000100664 EMBL:FO080733 PIR:T15717
RefSeq:NP_495523.3 ProteinModelPortal:Q09487 SMR:Q09487
DIP:DIP-27165N MINT:MINT-1110716 STRING:Q09487 PaxDb:Q09487
EnsemblMetazoa:C30G12.7 GeneID:174197 KEGG:cel:CELE_C30G12.7
UCSC:C30G12.7 CTD:174197 WormBase:C30G12.7 InParanoid:Q09487
OMA:KDSIFDE NextBio:882961 Uniprot:Q09487
Length = 535
Score = 371 (135.7 bits), Expect = 7.9e-33, P = 7.9e-33
Identities = 74/174 (42%), Positives = 112/174 (64%)
Query: 397 QKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAE-EKVSVFKEVLPHASKLMTDVFGNY 455
+ +LSDI G +++F+ DQ GSRFIQQ+L EK S+F EV+ +A +L+ D+FGNY
Sbjct: 188 KNLKLSDIRGALLKFAKDQVGSRFIQQELASSKDRFEKDSIFDEVVSNADELVDDIFGNY 247
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QKFFE+G L + ++ +V + QMY CRV+QKALE I + +++ ++
Sbjct: 248 VVQKFFEYGEERHWARLVDAIIDRVPEYAFQMYACRVLQKALEKINEPLQIKILSQIRHV 307
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAF---RGQVATLSTHPYGCRVIQ 566
+ RC++DQNGNHV+QK IE V + ++FI+ + +S PYGCRV+Q
Sbjct: 308 IHRCMKDQNGNHVVQKAIEKVSPQYVQFIVDTLLESSNTIYEMSVDPYGCRVVQ 361
Score = 215 (80.7 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 49/172 (28%), Positives = 86/172 (50%)
Query: 401 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKF 460
L + + I E SVD +G R +Q+ LEHCS + V ++ ++ + +GNYV+Q
Sbjct: 340 LLESSNTIYEMSVDPYGCRVVQRCLEHCSPSQTKPVIGQIHKRFDEIANNQYGNYVVQHV 399
Query: 461 FEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH----- 515
EHGS + R + ++ + + Y VI+K LE ++ KS +V H
Sbjct: 400 IEHGSEEDRMVIVTRVSNNLFEFATHKYSSNVIEKCLEQGAVYHKSMIVGAACHHQEGSV 459
Query: 516 --VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
V++ ++DQ N+V+QK + V +E+ +I R + L P+G ++
Sbjct: 460 PIVVQMMKDQYANYVVQKMFDQVTSEQRRELILTVRPHIPVLRQFPHGKHIL 511
Score = 175 (66.7 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 42/166 (25%), Positives = 78/166 (46%)
Query: 404 IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEH 463
I R+ E++ + R +Q+ LE + ++ + ++ + M D GN+V+QK E
Sbjct: 268 IIDRVPEYAFQMYACRVLQKALEKINEPLQIKILSQIRHVIHRCMKDQNGNHVVQKAIEK 327
Query: 464 GSPDQRKELAEKLV---GQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCV 520
SP + + + L+ + +S+ YGCRV+Q+ LE Q ++ ++
Sbjct: 328 VSPQYVQFIVDTLLESSNTIYEMSVDPYGCRVVQRCLEHCSPSQTKPVIGQIHKRFDEIA 387
Query: 521 RDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+Q GN+V+Q IE E I++ + +TH Y VI+
Sbjct: 388 NNQYGNYVVQHVIEHGSEEDRMVIVTRVSNNLFEFATHKYSSNVIE 433
>ASPGD|ASPL0000057098 [details] [associations]
symbol:AN10071 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BN001308 GO:GO:0003723
EnsemblFungi:CADANIAT00002391 OMA:HKFSSNV Uniprot:C8VU22
Length = 650
Score = 354 (129.7 bits), Expect = 5.3e-30, P = 5.3e-30
Identities = 78/214 (36%), Positives = 118/214 (55%)
Query: 364 YSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQ 423
Y G R E Q S++H+ + + S + I DQHG R++Q+
Sbjct: 197 YYGNGNYRLVESQPKPVGSRRHADGDSAQLSRFNNHPIEYYRNEIYGLCKDQHGCRYLQR 256
Query: 424 KLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPL 483
KLE + ++ +F E H +LMTD FGNY+ QK E+ + +QR L K Q++ +
Sbjct: 257 KLEERNDDQLQMIFAETHSHVIELMTDPFGNYLCQKLLEYSNDEQRTVLVNKAAPQLVKI 316
Query: 484 SLQMYGCRVIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIE 542
+L +G R +QK +E I +++Q V++ L HV+ V+D NGNHVIQKC+ + AEK +
Sbjct: 317 ALNQHGTRALQKMIEFISTEEQTQTVIDALKDHVVELVQDLNGNHVIQKCLNRLTAEKSQ 376
Query: 543 FIISAFRGQVATLSTHPYGCRVIQPH-NNASGFQ 575
FI A Q T+ TH +GC V+Q ++ASG Q
Sbjct: 377 FIYDAVGAQCVTVGTHRHGCCVLQRCIDHASGAQ 410
Score = 164 (62.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 45/189 (23%), Positives = 89/189 (47%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
L L + +Q F + + V +HG +Q+ ++H S ++ + +++ +A L
Sbjct: 367 LNRLTAEKSQ-FIYDAVGAQCVTVGTHRHGCCVLQRCIDHASGAQRARLIEQITENAFAL 425
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 507
+ D FGNYV+Q + + L + + ++ LS + VI+K L + + Q
Sbjct: 426 VQDPFGNYVVQYILDLAEARFTEPLCREFLSRIPKLSKHKFSSNVIEKCLRTADEEMRRQ 485
Query: 508 LVLE-LDGHVM-RCVRDQNGNHVIQKCIECV-PAEKIEFIISAFRGQVATLSTHPYGCRV 564
++ E L G + + +RD N+V+Q ++ PA + I+ + +L P+G R+
Sbjct: 486 MIEEMLAGDELEKMLRDSYANYVVQTAMDYADPATRAR-IVKYIEPILPSLRGTPHGRRI 544
Query: 565 ---IQPHNN 570
I P N+
Sbjct: 545 GSKIAPENS 553
Score = 122 (48.0 bits), Expect = 0.00045, P = 0.00045
Identities = 37/151 (24%), Positives = 66/151 (43%)
Query: 390 ELKSSNAQKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLM 448
E S+ Q + D + +VE D +G+ IQ+ L +AE+ ++ V +
Sbjct: 331 EFISTEEQTQTVIDALKDHVVELVQDLNGNHVIQKCLNRLTAEKSQFIYDAVGAQCVTVG 390
Query: 449 TDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQL 508
T G V+Q+ +H S QR L E++ L +G V+Q L++ E L
Sbjct: 391 THRHGCCVLQRCIDHASGAQRARLIEQITENAFALVQDPFGNYVVQYILDLAEARFTEPL 450
Query: 509 VLELDGHVMRCVRDQNGNHVIQKCIECVPAE 539
E + + + + ++VI+KC+ E
Sbjct: 451 CREFLSRIPKLSKHKFSSNVIEKCLRTADEE 481
>UNIPROTKB|H0YDC5 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525997 Uniprot:H0YDC5
Length = 217
Score = 322 (118.4 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 79/158 (50%), Positives = 95/158 (60%)
Query: 410 EFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQR 469
EFS DQHGSRFIQ KLE + E+ VF E+L A +LM DVFGNYVIQKFFE GS +Q+
Sbjct: 2 EFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQK 61
Query: 470 KELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVI 529
LAE++ G VL L+LQMYGCRVIQKALE I Q+ V L H C VI
Sbjct: 62 LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ---VFALSTHPYGC-------RVI 111
Query: 530 QKCIE-CVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
Q+ +E C+P + + I+ L YG VIQ
Sbjct: 112 QRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQ 148
Score = 195 (73.7 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 61/191 (31%), Positives = 89/191 (46%)
Query: 380 EDSKKHSFLEELKSSNAQKFE----LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS 435
+D F++ LK A E ++I + VD G+ IQ+ E S E+K++
Sbjct: 5 QDQHGSRFIQ-LKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLA 63
Query: 436 VFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQK 495
+ + + H L ++G VIQK E DQ QV LS YGCRVIQ+
Sbjct: 64 LAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ----------QVFALSTHPYGCRVIQR 113
Query: 496 ALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555
LE Q ++ EL H + V+DQ GN+VIQ +E E I++ RG V L
Sbjct: 114 ILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVL 173
Query: 556 STHPYGCRVIQ 566
S H + V++
Sbjct: 174 SQHKFASNVVE 184
Score = 172 (65.6 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 32/106 (30%), Positives = 60/106 (56%)
Query: 407 RIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSP 466
++ S +G R IQ+ LEHC ++ + + +E+ H +L+ D +GNYVIQ EHG P
Sbjct: 97 QVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRP 156
Query: 467 DQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL 512
+ + ++ ++ G VL LS + V++K + +++ L+ E+
Sbjct: 157 EDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEV 202
>TAIR|locus:2015036 [details] [associations]
symbol:PUM8 "pumilio 8" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AC073942 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000176806 IPI:IPI00535613 PIR:B86355 RefSeq:NP_173643.1
UniGene:At.51720 ProteinModelPortal:Q9LM20 SMR:Q9LM20 PRIDE:Q9LM20
EnsemblPlants:AT1G22240.1 GeneID:838829 KEGG:ath:AT1G22240
TAIR:At1g22240 InParanoid:Q9LM20 OMA:FCIDIAT PhylomeDB:Q9LM20
ProtClustDB:CLSN2914398 Genevestigator:Q9LM20 Uniprot:Q9LM20
Length = 515
Score = 301 (111.0 bits), Expect = 3.5e-24, P = 3.5e-24
Identities = 66/180 (36%), Positives = 105/180 (58%)
Query: 393 SSNAQKF--ELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTD 450
SSN + ++S+ G + + DQHG RF+Q E SA + + +F EV+PH +LM D
Sbjct: 186 SSNPNESLPKVSEFQGYVYFMAKDQHGCRFLQWIFEDGSALDALVIFSEVIPHVVELMMD 245
Query: 451 VFGNYVIQKFFEHGSPDQRKELAEKLV---GQVLPLSLQMYGCRVIQKALEVIELHQKSQ 507
FGNY++QK + + +QR ++ + GQ++ +SL YG RV+Q+ +E I+ ++
Sbjct: 246 PFGNYLMQKLLDVCNEEQRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVESIKTRKQIS 305
Query: 508 LVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
LV L + +RD NGNHVIQ+C++C+ E EFI ++TH +GC V+Q
Sbjct: 306 LVKSALRPGFLNLIRDLNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQ 365
Score = 127 (49.8 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 36/154 (23%), Positives = 70/154 (45%)
Query: 414 DQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELA 473
D +G+ IQ+ L+ S E+ +F++ + T G V+QK + S QR++L
Sbjct: 321 DLNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQKCIAYSSGLQREKLV 380
Query: 474 EKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCI 533
++ L L+ YG +Q LE+ + + ++ +L GH + + +H++++C+
Sbjct: 381 TEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVELSMQKFSSHMVERCL 440
Query: 534 ECVPAEKIEFIISAFR-GQVATLSTHPYGCRVIQ 566
P + + + L PY VIQ
Sbjct: 441 THCPESRPQIVRELISVPHFDILIQDPYANFVIQ 474
>DICTYBASE|DDB_G0289987 [details] [associations]
symbol:DDB_G0289987 "Pumilio homology domain family
member 4" species:44689 "Dictyostelium discoideum" [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50103 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0289987 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0008270 GO:GO:0003723
EMBL:AAFI02000150 eggNOG:COG5099 RefSeq:XP_635942.1
ProteinModelPortal:Q54GR0 EnsemblProtists:DDB0188671 GeneID:8627424
KEGG:ddi:DDB_G0289987 InParanoid:Q54GR0 OMA:IVRISMN Uniprot:Q54GR0
Length = 1036
Score = 302 (111.4 bits), Expect = 1.6e-23, P = 1.6e-23
Identities = 64/176 (36%), Positives = 99/176 (56%)
Query: 394 SNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFG 453
+N + + G I DQHG RF+Q+KLE + +FKEV + +LMTD FG
Sbjct: 702 ANKTYTSIDQVMGSIYPLCRDQHGCRFLQKKLEESDLQLTEIIFKEVCDYMLELMTDPFG 761
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-L 512
NY+ QK EH + QR + EK+ ++ +S+ M+G R +QK +E + ++ QL+ L
Sbjct: 762 NYLCQKLLEHCNDRQRLTIIEKVGTDIVRISMNMHGTRAVQKMIEYLTTPEQIQLIKRSL 821
Query: 513 DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFR--GQVATLSTHPYGCRVIQ 566
V+ ++D NGNHVIQKC+ + + +FI A G ++TH +GC V+Q
Sbjct: 822 KDSVVPLIQDLNGNHVIQKCLNKLSPQDNQFIYDAVSSDGSCIAVATHRHGCCVLQ 877
Score = 186 (70.5 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 42/161 (26%), Positives = 83/161 (51%)
Query: 406 GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGS 465
G + + +HG +Q+ ++H S +K+ + +EV+ ++ L+ D +GNYV+Q +
Sbjct: 861 GSCIAVATHRHGCCVLQRCIDHASESQKLQLIQEVIANSLVLVQDPYGNYVVQYVLDLPF 920
Query: 466 PDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-LD-GHVMRCVRDQ 523
E+A++ VG V L+ Q + V++K L V + + L+ E +D +++ ++D
Sbjct: 921 QGLATEMAKRFVGHVPILATQKFSSNVVEKCLHVADAITRGYLIQEVIDYDNLLHLLQDP 980
Query: 524 NGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRV 564
N+VIQ + + ++ A R + L PYG R+
Sbjct: 981 YANYVIQTSLTISEPHQHTKLVEAIRPHLPLLKNTPYGKRI 1021
Score = 184 (69.8 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 46/178 (25%), Positives = 95/178 (53%)
Query: 394 SNAQKFELSDIAGR-IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHAS-KLMTDV 451
++ Q+ + + G IV S++ HG+R +Q+ +E+ + E++ + K L + L+ D+
Sbjct: 773 NDRQRLTIIEKVGTDIVRISMNMHGTRAVQKMIEYLTTPEQIQLIKRSLKDSVVPLIQDL 832
Query: 452 FGNYVIQKFFEHGSPDQRKELAEKLV--GQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 509
GN+VIQK SP + + + + G + ++ +GC V+Q+ ++ QK QL+
Sbjct: 833 NGNHVIQKCLNKLSPQDNQFIYDAVSSDGSCIAVATHRHGCCVLQRCIDHASESQKLQLI 892
Query: 510 LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEF-IISAFRGQVATLSTHPYGCRVIQ 566
E+ + + V+D GN+V+Q ++ +P + + + F G V L+T + V++
Sbjct: 893 QEVIANSLVLVQDPYGNYVVQYVLD-LPFQGLATEMAKRFVGHVPILATQKFSSNVVE 949
>POMBASE|SPAC6G9.14 [details] [associations]
symbol:SPAC6G9.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC6G9.14 GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 OrthoDB:EOG42NN7Z PIR:T39076
RefSeq:NP_594123.1 ProteinModelPortal:Q92359
EnsemblFungi:SPAC6G9.14.1 GeneID:2542056 KEGG:spo:SPAC6G9.14
NextBio:20803131 Uniprot:Q92359
Length = 681
Score = 298 (110.0 bits), Expect = 2.0e-23, P = 2.0e-23
Identities = 65/175 (37%), Positives = 97/175 (55%)
Query: 393 SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVF 452
SS+ L + I+ F DQHG R++Q+ LE + +VF E P+ + LM D F
Sbjct: 335 SSSVASLSLQN--SNILSFCKDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAF 392
Query: 453 GNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIEL-HQKSQLVLE 511
GNY+ QK FEH S QR + + +++P+S M+G R +QK ++++ Q S +V
Sbjct: 393 GNYLCQKLFEHASEAQRSTFIQIIAPKLVPISFNMHGTRALQKIIDLVSSPDQISCIVNA 452
Query: 512 LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
L +V+ +D NGNHVIQKC+ E +FI A +STH +GC V+Q
Sbjct: 453 LRPNVVLLTKDLNGNHVIQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQ 507
Score = 193 (73.0 bits), Expect = 8.6e-12, P = 8.6e-12
Identities = 52/176 (29%), Positives = 90/176 (51%)
Query: 393 SSNAQKFE-LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-PHASKLMTD 450
+S AQ+ + IA ++V S + HG+R +Q+ ++ S+ +++S L P+ L D
Sbjct: 404 ASEAQRSTFIQIIAPKLVPISFNMHGTRALQKIIDLVSSPDQISCIVNALRPNVVLLTKD 463
Query: 451 VFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVL 510
+ GN+VIQK S + + + + + L +S +GC V+Q+ + Q QLV
Sbjct: 464 LNGNHVIQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQIEQLVE 523
Query: 511 ELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ H + V+D GN+V+Q +E E IIS F +V LST + V++
Sbjct: 524 HIVPHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVME 579
Score = 182 (69.1 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 39/159 (24%), Positives = 81/159 (50%)
Query: 409 VEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQ 468
++ S +HG +Q+ +H S + + + ++PHA L+ D FGNYV+Q E +P+
Sbjct: 494 LDVSTHRHGCCVVQRCFDHASPAQIEQLVEHIVPHALTLVQDAFGNYVLQYVLELNNPNH 553
Query: 469 RKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL--DGHVMRCVRDQNGN 526
+ + + +V LS Q + V++K + K +L+ EL + H+ + +RD N
Sbjct: 554 TEAIISYFLYKVRALSTQKFSSNVMEKCIFFAPAAIKEKLISELMDEKHLPKLLRDSFAN 613
Query: 527 HVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
+VIQ ++ ++ ++ + + ++ P G R++
Sbjct: 614 YVIQTALDNASVKQRAELVERIKPLIPSIKNTPCGRRIL 652
Score = 132 (51.5 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 39/140 (27%), Positives = 70/140 (50%)
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPD 467
+V + D +G+ IQ+ L S E+ +F + + T G V+Q+ F+H SP
Sbjct: 457 VVLLTKDLNGNHVIQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDHASPA 516
Query: 468 QRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQN-GN 526
Q ++L E +V L L +G V+Q LE+ + ++ ++ + +R + Q +
Sbjct: 517 QIEQLVEHIVPHALTLVQDAFGNYVLQYVLELNNPNH-TEAIISYFLYKVRALSTQKFSS 575
Query: 527 HVIQKCIECVPAEKIEFIIS 546
+V++KCI PA E +IS
Sbjct: 576 NVMEKCIFFAPAAIKEKLIS 595
>TAIR|locus:2194699 [details] [associations]
symbol:PUM7 "pumilio 7" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC012680 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00517199 PIR:H96810
RefSeq:NP_177940.2 UniGene:At.52554 ProteinModelPortal:Q9C9R6
SMR:Q9C9R6 EnsemblPlants:AT1G78160.1 GeneID:844152
KEGG:ath:AT1G78160 TAIR:At1g78160 HOGENOM:HOG000176806
InParanoid:Q9C9R6 OMA:REYSAYS PhylomeDB:Q9C9R6
Genevestigator:Q9C9R6 Uniprot:Q9C9R6
Length = 650
Score = 295 (108.9 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 61/170 (35%), Positives = 102/170 (60%)
Query: 401 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKF 460
+ DI G + + DQHG RF+Q+ + ++ + + +F EV+ H +LM D FGNY++QK
Sbjct: 331 MCDIQGYVYLMAKDQHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLMQKL 390
Query: 461 FEHGSPDQRKEL---AEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV-LELDGHV 516
+ + +QR ++ A + GQ++ +SL YG RV+Q+ +E I ++ LV L L
Sbjct: 391 LDVCTEEQRTQIVLVATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALRPGF 450
Query: 517 MRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ ++D NGNHVIQ+C++C+ E +FI A ++TH +GC V+Q
Sbjct: 451 LDLIKDLNGNHVIQRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQ 500
Score = 161 (61.7 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 36/162 (22%), Positives = 82/162 (50%)
Query: 406 GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-PHASKLMTDVFGNYVIQKFFEHG 464
G+++ S++ +G+R +Q+ +E + +++S+ K L P L+ D+ GN+VIQ+ +
Sbjct: 411 GQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALRPGFLDLIKDLNGNHVIQRCLQCL 470
Query: 465 SPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQN 524
S + K + + ++ +GC V+QK + Q+ +L+ E+ + + +D
Sbjct: 471 STEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQREKLIAEISRNSLLLAQDPF 530
Query: 525 GNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
GN+ +Q IE + +++ +G LS + +++
Sbjct: 531 GNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVE 572
Score = 128 (50.1 bits), Expect = 0.00010, P = 0.00010
Identities = 42/180 (23%), Positives = 79/180 (43%)
Query: 393 SSNAQKFELSDIAGRI-VEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDV 451
S+ KF + D A + E + +HG +Q+ + + +++ + E+ ++ L D
Sbjct: 471 STEDNKF-IFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQREKLIAEISRNSLLLAQDP 529
Query: 452 FGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE 511
FGNY +Q E P + +L G + LS+Q + ++++ L + Q+V E
Sbjct: 530 FGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVERCLMHCP-ESRPQIVRE 588
Query: 512 LDG--HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQPHN 569
L H + ++D N VIQ + ++ R + L +PY C+ I N
Sbjct: 589 LVSVPHFDQLLQDPYANFVIQAALAATKGPLHASLVEVIRPH-SILRNNPY-CKRIFSRN 646
>SGD|S000002982 [details] [associations]
symbol:PUF4 "Member of the PUF protein family" species:4932
"Saccharomyces cerevisiae" [GO:0008104 "protein localization"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003729
"mRNA binding" evidence=ISS;IDA] [GO:0001308 "negative regulation
of chromatin silencing involved in replicative cell aging"
evidence=IGI;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IGI]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000002982 GO:GO:0005737 GO:GO:0008104
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941
GO:GO:0017148 GO:GO:0003729 GO:GO:0006351 EMBL:S58126 GO:GO:0000288
eggNOG:COG5099 GeneTree:ENSGT00390000017241 GO:GO:0001308
OrthoDB:EOG42NN7Z EMBL:S57889 EMBL:Z72536 PIR:S64016
RefSeq:NP_011501.1 PDB:3BWT PDB:3BX2 PDB:3BX3 PDB:4DZS PDBsum:3BWT
PDBsum:3BX2 PDBsum:3BX3 PDBsum:4DZS ProteinModelPortal:P25339
SMR:P25339 DIP:DIP-2638N IntAct:P25339 MINT:MINT-425380
STRING:P25339 PaxDb:P25339 PeptideAtlas:P25339 EnsemblFungi:YGL014W
GeneID:852870 KEGG:sce:YGL014W CYGD:YGL014w HOGENOM:HOG000115799
OMA:FRRQTFH EvolutionaryTrace:P25339 NextBio:972496
Genevestigator:P25339 GermOnline:YGL014W Uniprot:P25339
Length = 888
Score = 292 (107.8 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
Identities = 64/186 (34%), Positives = 106/186 (56%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
++K +EE SS L G I DQHG RF+Q++L+ ++ ++F+E
Sbjct: 544 AEKQRKIEE--SSRFADAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETK 601
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
+ +LMTD FGNY+IQK E + +QR L + + +SL +G R +QK +E I+
Sbjct: 602 DYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRALQKLIECIK 661
Query: 502 LHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 560
+++Q+V++ L + ++ +D NGNHVIQKC++ + E +FI A ++TH +
Sbjct: 662 TDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRH 721
Query: 561 GCRVIQ 566
GC V+Q
Sbjct: 722 GCCVLQ 727
Score = 173 (66.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 51/186 (27%), Positives = 94/186 (50%)
Query: 388 LEELKSSNAQKFELSDIAG-RIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-PHAS 445
LEE+ + Q+ L+ I+ VE S++ HG+R +Q+ +E +E+ + + L P+
Sbjct: 621 LEEVTTE--QRIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTV 678
Query: 446 KLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQK 505
+L D+ GN+VIQK + P+ + + + + + ++ +GC V+Q+ L+ Q
Sbjct: 679 QLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQC 738
Query: 506 SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEF-----IISAFRGQVATLSTHPY 560
L +L V + D GN+V+Q I AEK ++ I+ + + LS H +
Sbjct: 739 DNLCDKLLALVDKLTLDPFGNYVVQYIIT-KEAEKNKYDYTHKIVHLLKPRAIELSIHKF 797
Query: 561 GCRVIQ 566
G VI+
Sbjct: 798 GSNVIE 803
Score = 151 (58.2 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 48/190 (25%), Positives = 90/190 (47%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
L+ LK N Q F I+ ++ + +HG +Q+ L+H + E+ ++ ++L KL
Sbjct: 694 LQRLKPENFQ-FIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKL 752
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLP----LSLQMYGCRVIQKALEVIELH 503
D FGNYV+Q + + + K+V + P LS+ +G VI+K L+ +
Sbjct: 753 TLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIEKILKTAIVS 812
Query: 504 QKSQL-VLELDGH--VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL----- 555
+ L +L G + + D GN+V+Q ++ + ++ +++ VA L
Sbjct: 813 EPMILEILNNGGETGIQSLLNDSYGNYVLQTALD-ISHKQNDYLYKRLSEIVAPLLVGPI 871
Query: 556 STHPYGCRVI 565
P+G R+I
Sbjct: 872 RNTPHGKRII 881
Score = 40 (19.1 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
Identities = 20/100 (20%), Positives = 36/100 (36%)
Query: 103 MQQYPSAXXXXXXXXXXXXXXXXSLGMNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYN 162
MQ + A S+ +N ++ +++P N S + S + S+ +
Sbjct: 231 MQNFSKAKKPSVGANNTAKTRTQSISFDNTPSSTSFIPPTNSV--SEKLSDFKIETSKED 288
Query: 163 VGGYALNSALFPP--FVAGYPSQGPVPMPFDATSGSSFNI 200
+ + P + A YP GP+ P G NI
Sbjct: 289 LINKTAPAKKESPTTYGAAYPYGGPLLQPNPIMPGHPHNI 328
Score = 38 (18.4 bits), Expect = 9.6e-22, Sum P(2) = 9.6e-22
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 19 PCVMDPQDIALISNNGPAAVSFSSSPCPDGTETSRNPR 56
P P +A + N +V+FS G T+ N +
Sbjct: 370 PLTQSPIHLAPVLNPSSNSVAFSDMKNDGGKPTTDNDK 407
>GENEDB_PFALCIPARUM|PFD0825c [details] [associations]
symbol:PFD0825c "RNA-binding protein of
pumilio/mpt5 family, putative" species:5833 "Plasmodium falciparum"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 276 (102.2 bits), Expect = 2.6e-21, P = 2.6e-21
Identities = 65/219 (29%), Positives = 110/219 (50%)
Query: 349 HEMRLPQGLNRNTGIYSGWQGQRTFEGQRTFE-DSKKHSFLEELKSSNAQKFELSDIAGR 407
H + P+ + N Y Q + F+ D +KH+ EE ++S +
Sbjct: 145 HYEKSPEQVIDNKRYYENLPEQVIINKKDMFKNDEEKHN--EE----GQVHIDMSKVMYD 198
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPD 467
I ++G +I +KL+ + EEK + +L L D++G+YV Q F+
Sbjct: 199 IYFLCFHKNGCEYIIKKLKEDNKEEKEIILNSLLIDTMSLCPDIYGSYVAQSIFDLKDEK 258
Query: 468 QRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNH 527
++ ++ + L+L YGCR+IQK+LE + K ++ EL +++ + QNGNH
Sbjct: 259 YKERFTDEFLKHTSFLTLHTYGCRLIQKSLESLSDEYKCKIFKELQEDLIKYICHQNGNH 318
Query: 528 VIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
VIQKC+E +P I+ II+ + LS+H YGCR++Q
Sbjct: 319 VIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQ 357
Score = 196 (74.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 51/153 (33%), Positives = 82/153 (53%)
Query: 416 HGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEK 475
+G R IQ+ LE S E K +FKE+ K + GN+VIQK E P ++
Sbjct: 279 YGCRLIQKSLESLSDEYKCKIFKELQEDLIKYICHQNGNHVIQKCVEV-LPCSYIDIIIN 337
Query: 476 LVGQVLP-LSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIE 534
++ + LP LS YGCR++Q+ E+ Q ++L ++ + ++++ GN+VIQKC E
Sbjct: 338 IIEEYLPFLSSHAYGCRIVQRIYEIGNEQQINRLNEQIIKKI-HLIKNRYGNYVIQKCFE 396
Query: 535 CVPAEKIEFIIS-AFRGQVATLSTHPYGCRVIQ 566
+ I FII+ + LS+H Y C +I+
Sbjct: 397 HSD-DNIRFIITDEIVNDIYKLSSHKYACNIIE 428
Score = 165 (63.1 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 43/162 (26%), Positives = 80/162 (49%)
Query: 416 HGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEK 475
+G R +Q+ E E++++ E + L+ + +GNYVIQK FEH + R + ++
Sbjct: 351 YGCRIVQRIYE-IGNEQQINRLNEQIIKKIHLIKNRYGNYVIQKCFEHSDDNIRFIITDE 409
Query: 476 LVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL-----DG--HVMRCVRDQNGNHV 528
+V + LS Y C +I+K L E K +++ ++ DG +++ +D GN +
Sbjct: 410 IVNDIYKLSSHKYACNIIEKILLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGNFM 469
Query: 529 IQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQPHNN 570
+QK + ++ FII + L YG +++ NN
Sbjct: 470 MQKLLTTCRKKERNFIIKTIIENLDKLKDETYGKYILRAINN 511
>UNIPROTKB|Q8I1R7 [details] [associations]
symbol:PFD0825c "RNA-binding protein of pumilio/mpt5
family, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 276 (102.2 bits), Expect = 2.6e-21, P = 2.6e-21
Identities = 65/219 (29%), Positives = 110/219 (50%)
Query: 349 HEMRLPQGLNRNTGIYSGWQGQRTFEGQRTFE-DSKKHSFLEELKSSNAQKFELSDIAGR 407
H + P+ + N Y Q + F+ D +KH+ EE ++S +
Sbjct: 145 HYEKSPEQVIDNKRYYENLPEQVIINKKDMFKNDEEKHN--EE----GQVHIDMSKVMYD 198
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPD 467
I ++G +I +KL+ + EEK + +L L D++G+YV Q F+
Sbjct: 199 IYFLCFHKNGCEYIIKKLKEDNKEEKEIILNSLLIDTMSLCPDIYGSYVAQSIFDLKDEK 258
Query: 468 QRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNH 527
++ ++ + L+L YGCR+IQK+LE + K ++ EL +++ + QNGNH
Sbjct: 259 YKERFTDEFLKHTSFLTLHTYGCRLIQKSLESLSDEYKCKIFKELQEDLIKYICHQNGNH 318
Query: 528 VIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
VIQKC+E +P I+ II+ + LS+H YGCR++Q
Sbjct: 319 VIQKCVEVLPCSYIDIIINIIEEYLPFLSSHAYGCRIVQ 357
Score = 196 (74.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 51/153 (33%), Positives = 82/153 (53%)
Query: 416 HGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEK 475
+G R IQ+ LE S E K +FKE+ K + GN+VIQK E P ++
Sbjct: 279 YGCRLIQKSLESLSDEYKCKIFKELQEDLIKYICHQNGNHVIQKCVEV-LPCSYIDIIIN 337
Query: 476 LVGQVLP-LSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIE 534
++ + LP LS YGCR++Q+ E+ Q ++L ++ + ++++ GN+VIQKC E
Sbjct: 338 IIEEYLPFLSSHAYGCRIVQRIYEIGNEQQINRLNEQIIKKI-HLIKNRYGNYVIQKCFE 396
Query: 535 CVPAEKIEFIIS-AFRGQVATLSTHPYGCRVIQ 566
+ I FII+ + LS+H Y C +I+
Sbjct: 397 HSD-DNIRFIITDEIVNDIYKLSSHKYACNIIE 428
Score = 165 (63.1 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 43/162 (26%), Positives = 80/162 (49%)
Query: 416 HGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEK 475
+G R +Q+ E E++++ E + L+ + +GNYVIQK FEH + R + ++
Sbjct: 351 YGCRIVQRIYE-IGNEQQINRLNEQIIKKIHLIKNRYGNYVIQKCFEHSDDNIRFIITDE 409
Query: 476 LVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL-----DG--HVMRCVRDQNGNHV 528
+V + LS Y C +I+K L E K +++ ++ DG +++ +D GN +
Sbjct: 410 IVNDIYKLSSHKYACNIIEKILLKKEYKYKKKIIKKIVNDISDGKDNIINICKDCYGNFM 469
Query: 529 IQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQPHNN 570
+QK + ++ FII + L YG +++ NN
Sbjct: 470 MQKLLTTCRKKERNFIIKTIIENLDKLKDETYGKYILRAINN 511
>TAIR|locus:2167111 [details] [associations]
symbol:PUM12 "pumilio 12" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB019234 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00534318
RefSeq:NP_200462.2 UniGene:At.55587 ProteinModelPortal:Q9LVC3
SMR:Q9LVC3 STRING:Q9LVC3 EnsemblPlants:AT5G56510.1 GeneID:835752
KEGG:ath:AT5G56510 TAIR:At5g56510 HOGENOM:HOG000176955
InParanoid:Q9LVC3 OMA:NDIEMIF PhylomeDB:Q9LVC3
Genevestigator:Q9LVC3 Uniprot:Q9LVC3
Length = 596
Score = 260 (96.6 bits), Expect = 2.6e-19, P = 2.6e-19
Identities = 61/223 (27%), Positives = 112/223 (50%)
Query: 351 MRLPQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSFLEELK--SSNAQKFE-LSDIAGR 407
MR LN I G G + G+ ++ L S QK+ +++ G+
Sbjct: 223 MRSQMDLNTAKVIKYG-AGDESQNGRLWLQNQLNEDLTMSLNNLSLQPQKYNSIAEARGK 281
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPD 467
I + DQHG RF+Q+ + +F E++ + S+LM D FGNY++QK E + D
Sbjct: 282 IYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFGNYLVQKLLEVCNED 341
Query: 468 QRKELAEKLV---GQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH-VMRCVRDQ 523
QR ++ + G ++ +S M+G R +QK +E + ++ +++ H ++ +++
Sbjct: 342 QRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVETAKREEEISIIISALKHGIVHLIKNV 401
Query: 524 NGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
NGNHV+Q+C++ + +F+ A L+T +GC V+Q
Sbjct: 402 NGNHVVQRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQ 444
Score = 199 (75.1 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 49/170 (28%), Positives = 87/170 (51%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
KF VE + D+HG +Q+ L + E+K + E+ +A L D FGNYV+
Sbjct: 420 KFLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQKQHLVSEIASNALLLSQDPFGNYVL 479
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD--GH 515
Q FE E+ E+L G LS+Q V++K L++ + +++++ EL G
Sbjct: 480 QYVFELQLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHRARIIRELINYGR 539
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
+ + + D GN+VIQ ++ ++ A + +++L T+PYG +V+
Sbjct: 540 LDQVMLDPYGNYVIQAALKQSKGNVHALLVDAIKLNISSLRTNPYGKKVL 589
Score = 186 (70.5 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 48/163 (29%), Positives = 81/163 (49%)
Query: 406 GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHAS-KLMTDVFGNYVIQKFFEHG 464
G +++ S D HG+R +Q+ +E EE++S+ L H L+ +V GN+V+Q+ ++
Sbjct: 355 GLLIKISCDMHGTRAVQKIVETAKREEEISIIISALKHGIVHLIKNVNGNHVVQRCLQYL 414
Query: 465 SPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQN 524
P K L E + + L+ +GC V+QK L E QK LV E+ + + +D
Sbjct: 415 LPYCGKFLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQKQHLVSEIASNALLLSQDPF 474
Query: 525 GNHVIQKCIECVPAEKIEF-IISAFRGQVATLSTHPYGCRVIQ 566
GN+V+Q E + + F I+ G LS V++
Sbjct: 475 GNYVLQYVFE-LQLQWATFEILEQLEGNYTELSMQKCSSNVVE 516
Score = 128 (50.1 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 43/182 (23%), Positives = 83/182 (45%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
+E K +S + IV + +G+ +Q+ L++ +F+ + H +L
Sbjct: 374 VETAKREEEISIIISALKHGIVHLIKNVNGNHVVQRCLQYLLPYCGKFLFEAAITHCVEL 433
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 507
TD G V+QK + +Q++ L ++ L LS +G V+Q E ++L +
Sbjct: 434 ATDRHGCCVLQKCLGYSEGEQKQHLVSEIASNALLLSQDPFGNYVLQYVFE-LQLQWATF 492
Query: 508 LVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAF--RGQVATLSTHPYGCRV 564
+LE L+G+ + ++V++KC++ + II G++ + PYG V
Sbjct: 493 EILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHRARIIRELINYGRLDQVMLDPYGNYV 552
Query: 565 IQ 566
IQ
Sbjct: 553 IQ 554
>DICTYBASE|DDB_G0279557 [details] [associations]
symbol:DDB_G0279557 "pumilio RNA-binding
region-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0279557 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AAFI02000031 eggNOG:COG5099 RefSeq:XP_641698.1
ProteinModelPortal:Q54WL9 EnsemblProtists:DDB0305068 GeneID:8622107
KEGG:ddi:DDB_G0279557 InParanoid:Q54WL9 OMA:STHAANS Uniprot:Q54WL9
Length = 782
Score = 255 (94.8 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 52/176 (29%), Positives = 94/176 (53%)
Query: 391 LKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS-VFKEVLPHASKLMT 449
L + + + L +I G+I + Q G RF+Q+KLE E V+ +F EV H ++LM
Sbjct: 458 LNNQDPKCTSLEEITGQIYHLTKYQAGCRFLQKKLEEKPDSEHVTLIFNEVFDHLNELMI 517
Query: 450 DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 509
D +G Y+I + ++ +QR+++ +K+ V + +YG IQK L+ + Q ++
Sbjct: 518 DPYGQYLIPQLMKYCDNNQRRQIVDKIAPSVETFACHVYGIHGIQKLLQYLSPDQVESII 577
Query: 510 LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
+ G V++ +D GN++IQ ++ E +F+ A G + + TH GC V+
Sbjct: 578 ASIKGKVIQLSKDNKGNYLIQSFLKQFSPEVNQFVCDAIMGNIEEICTHKVGCTVV 633
Score = 188 (71.2 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 45/173 (26%), Positives = 88/173 (50%)
Query: 395 NAQKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFG 453
N Q+ ++ D IA + F+ +G IQ+ L++ S ++ S+ + +L D G
Sbjct: 534 NNQRRQIVDKIAPSVETFACHVYGIHGIQKLLQYLSPDQVESIIASIKGKVIQLSKDNKG 593
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
NY+IQ F + SP+ + + + ++G + + GC V+ + ++ Q +LV ++
Sbjct: 594 NYLIQSFLKQFSPEVNQFVCDAIMGNIEEICTHKVGCTVVNRCIDNANPEQLEKLVDKIT 653
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
H ++ V+DQ GN+V+Q + A + I+S + +A LS + VI+
Sbjct: 654 EHSLKLVQDQFGNYVVQHLLSKNKAYSSKLIVS-LKDNIAELSIQKFSSNVIE 705
Score = 154 (59.3 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 40/167 (23%), Positives = 80/167 (47%)
Query: 401 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKF 460
++ I G++++ S D G+ IQ L+ S E V ++ + ++ T G V+ +
Sbjct: 577 IASIKGKVIQLSKDNKGNYLIQSFLKQFSPEVNQFVCDAIMGNIEEICTHKVGCTVVNRC 636
Query: 461 FEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCV 520
++ +P+Q ++L +K+ L L +G V+Q L + + S+L++ L ++
Sbjct: 637 IDNANPEQLEKLVDKITEHSLKLVQDQFGNYVVQHLLSKNKAYS-SKLIVSLKDNIAELS 695
Query: 521 RDQNGNHVIQKCIECVPAEKIEFIISAF-RGQVATLSTHPYGCRVIQ 566
+ ++VI+KC++ E II A + +L Y VIQ
Sbjct: 696 IQKFSSNVIEKCLQLADTPTYELIIKALTEADILSLLQDKYANFVIQ 742
Score = 147 (56.8 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 37/150 (24%), Positives = 71/150 (47%)
Query: 386 SFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHAS 445
SFL++ S +F I G I E + G + + +++ + E+ + ++ H+
Sbjct: 599 SFLKQF-SPEVNQFVCDAIMGNIEEICTHKVGCTVVNRCIDNANPEQLEKLVDKITEHSL 657
Query: 446 KLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQK 505
KL+ D FGNYV+Q K L L + LS+Q + VI+K L++ +
Sbjct: 658 KLVQDQFGNYVVQHLLSKNKAYSSK-LIVSLKDNIAELSIQKFSSNVIEKCLQLADTPTY 716
Query: 506 SQLVLEL-DGHVMRCVRDQNGNHVIQKCIE 534
++ L + ++ ++D+ N VIQ ++
Sbjct: 717 ELIIKALTEADILSLLQDKYANFVIQTALD 746
Score = 51 (23.0 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 29/114 (25%), Positives = 41/114 (35%)
Query: 233 PFVDPLHMQYFQHPFGDAYNASVQHRLASSGVNGALADPSSKKEPIVAAYMGDQNLQSSL 292
P Q Q P G ++S L SSG G+++ SS P + N Q+
Sbjct: 210 PLSSQQQTQQQQQPIGHPSSSSTPSSLNSSG--GSISTSSSTSSPATSTNT-TPNTQA-- 264
Query: 293 NGGPSISNPRKXXXXXXXXXXXXXXXXXXXQFP--TSPIASP-VLPSSPVGSTS 343
P +PRK P +S I SP ++P+ STS
Sbjct: 265 ---P-FKSPRKLNTSGSGLTSIIPPGFSNESSPNTSSNIVSPSTTTTTPLSSTS 314
Score = 41 (19.5 bits), Expect = 5.0e-18, Sum P(2) = 5.0e-18
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 179 GYPSQGPVPMPFDATSGS-SFNIRTTSVST 207
G+PS P +++ GS S + T+S +T
Sbjct: 225 GHPSSSSTPSSLNSSGGSISTSSSTSSPAT 254
Score = 38 (18.4 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 183 QGPVPMPFDATSGSSFNIRTTSVST 207
Q P+ P +++ SS N S+ST
Sbjct: 221 QQPIGHPSSSSTPSSLNSSGGSIST 245
>TAIR|locus:2011349 [details] [associations]
symbol:PUM9 "pumilio 9" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HOGENOM:HOG000124802 EMBL:DQ446324
IPI:IPI00533721 PIR:D86479 RefSeq:NP_174811.1 UniGene:At.51961
ProteinModelPortal:Q1PFN9 SMR:Q1PFN9 PRIDE:Q1PFN9
EnsemblPlants:AT1G35730.1 GeneID:840477 KEGG:ath:AT1G35730
TAIR:At1g35730 InParanoid:Q1PFN9 OMA:CAEIAIH PhylomeDB:Q1PFN9
ProtClustDB:CLSN2681930 Genevestigator:Q1PFN9 Uniprot:Q1PFN9
Length = 564
Score = 249 (92.7 bits), Expect = 3.9e-18, P = 3.9e-18
Identities = 58/187 (31%), Positives = 97/187 (51%)
Query: 394 SNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFG 453
SN + +I G + + DQ G R +Q+ +E + E + ++ H +L D FG
Sbjct: 240 SNNDLVSMVEIYGSVNLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVELSMDPFG 299
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVG---QVLPLSLQMYGCRVIQKALEVIELHQKSQLVL 510
NY++QK F+ +QR + L +++ + L YG RV+QK +E ++ Q+ LV
Sbjct: 300 NYIVQKLFDVSDEEQRTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQIALVK 359
Query: 511 E-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQPH- 568
L + V+D NGNHVIQ C++ + EF++ A A ++ H +GC V+Q
Sbjct: 360 SGLKPGFLALVKDLNGNHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQCCI 419
Query: 569 NNASGFQ 575
+N+ G Q
Sbjct: 420 SNSVGLQ 426
Score = 149 (57.5 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 37/160 (23%), Positives = 81/160 (50%)
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-PHASKLMTDVFGNYVIQKFFEHGSP 466
++ ++ +G+R +Q+ +E ++++++ K L P L+ D+ GN+VIQ + P
Sbjct: 329 LIRICLNTYGTRVVQKMIETVKTKQQIALVKSGLKPGFLALVKDLNGNHVIQSCLQTLGP 388
Query: 467 DQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGN 526
+ + + E +++ +GC V+Q + Q+ +LV E+ + + +D GN
Sbjct: 389 NDNEFVLEAATKYCAEIAIHRHGCCVLQCCISNSVGLQRERLVAEISRNSLHLSQDPFGN 448
Query: 527 HVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+V+Q I+ ++ ++ FR A L+T + VI+
Sbjct: 449 YVVQYLID-QQVSAVKLLVQ-FRMHYAELATQKFSSHVIE 486
>SGD|S000003146 [details] [associations]
symbol:MPT5 "mRNA-binding protein of the PUF family"
species:4932 "Saccharomyces cerevisiae" [GO:0030674 "protein
binding, bridging" evidence=IPI] [GO:0045947 "negative regulation
of translational initiation" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000003146 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941 GO:GO:0045947
GO:GO:0003729 eggNOG:COG5099 GeneTree:ENSGT00390000017241
EMBL:X83690 EMBL:Z72700 EMBL:D25541 EMBL:D26184 PIR:S64195
RefSeq:NP_011337.1 ProteinModelPortal:P39016 SMR:P39016
DIP:DIP-2271N IntAct:P39016 MINT:MINT-2779525 STRING:P39016
PaxDb:P39016 PRIDE:P39016 EnsemblFungi:YGL178W GeneID:852697
KEGG:sce:YGL178W CYGD:YGL178w HOGENOM:HOG000113640 OMA:ISINQYG
OrthoDB:EOG42NN7Z NextBio:972038 Genevestigator:P39016
GermOnline:YGL178W GO:GO:1900153 Uniprot:P39016
Length = 859
Score = 250 (93.1 bits), Expect = 6.9e-18, P = 6.9e-18
Identities = 60/188 (31%), Positives = 103/188 (54%)
Query: 393 SSNAQKFELSDIAGRIVEF---SVDQHGSRFIQQKLEHCSAEEKVS--VFKEVLPHASKL 447
S+++ E+S + R +++ + DQ G RF+Q+KLE S V +++++ P L
Sbjct: 197 STSSSMVEISALPLRDLDYIKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDL 256
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQ 507
+ D FGNY++QK ++ + +Q+ L + + V +S+ YG R +QK ++ ++ +
Sbjct: 257 ILDPFGNYLVQKLCDYLTAEQKTLLIQTIYPNVFQISINQYGTRSLQKIIDTVDNEVQID 316
Query: 508 LVL-----ELDG--HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAF--RGQVATLSTH 558
L++ E V+ + D NGNHVIQKCI K FII A + + T+STH
Sbjct: 317 LIIKGFSQEFTSIEQVVTLINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTH 376
Query: 559 PYGCRVIQ 566
+GC V+Q
Sbjct: 377 KHGCCVLQ 384
Score = 136 (52.9 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 38/156 (24%), Positives = 83/156 (53%)
Query: 401 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSV----FKEVLPHASKLMT---DVFG 453
+ I + + S++Q+G+R +Q+ ++ E ++ + F + +++T D+ G
Sbjct: 282 IQTIYPNVFQISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQEFTSIEQVVTLINDLNG 341
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQ--VLPLSLQMYGCRVIQKALEVIELHQKSQLVLE 511
N+VIQK SP + + + +V Q ++ +S +GC V+QK L V L Q ++ ++
Sbjct: 342 NHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQKLLSVCTLQQIFKISVK 401
Query: 512 LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISA 547
+ + + DQ GN++IQ ++ ++++F + A
Sbjct: 402 IVQFLPGLINDQFGNYIIQFLLDI---KELDFYLLA 434
>WB|WBGene00004239 [details] [associations]
symbol:puf-3 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0035046 "pronuclear
migration" evidence=IMP] [GO:0009992 "cellular water homeostasis"
evidence=IMP] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 245 (91.3 bits), Expect = 7.9e-18, P = 7.9e-18
Identities = 60/178 (33%), Positives = 99/178 (55%)
Query: 401 LSDIAGR--IVEFSVDQHGSRFIQQKLEHCSAEEKVSV----FKEVLPHAS---KLMTDV 451
L D+ +VEF+ D++G RF+Q EH E V F++++ + L +++
Sbjct: 137 LQDVLANDALVEFATDKNGCRFLQ---EHYPTENDNDVHQKLFRKLVEDRAIFLSLCSNM 193
Query: 452 FGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE 511
FGN+ +Q+ E + ++++ L E L + L L CRVIQ A++ +++H ++L LE
Sbjct: 194 FGNFFVQRVLECSNTEEQEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLE 253
Query: 512 L-DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQ--VATLSTHPYGCRVIQ 566
L D H++R DQNGNHVIQK ++ +P F++ F + + YGCRVIQ
Sbjct: 254 LRDTHLVRLSIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCRVIQ 311
>UNIPROTKB|Q9U2G4 [details] [associations]
symbol:puf-3 "Protein PUF-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 245 (91.3 bits), Expect = 7.9e-18, P = 7.9e-18
Identities = 60/178 (33%), Positives = 99/178 (55%)
Query: 401 LSDIAGR--IVEFSVDQHGSRFIQQKLEHCSAEEKVSV----FKEVLPHAS---KLMTDV 451
L D+ +VEF+ D++G RF+Q EH E V F++++ + L +++
Sbjct: 137 LQDVLANDALVEFATDKNGCRFLQ---EHYPTENDNDVHQKLFRKLVEDRAIFLSLCSNM 193
Query: 452 FGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE 511
FGN+ +Q+ E + ++++ L E L + L L CRVIQ A++ +++H ++L LE
Sbjct: 194 FGNFFVQRVLECSNTEEQEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLE 253
Query: 512 L-DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQ--VATLSTHPYGCRVIQ 566
L D H++R DQNGNHVIQK ++ +P F++ F + + YGCRVIQ
Sbjct: 254 LRDTHLVRLSIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCRVIQ 311
>WB|WBGene00022257 [details] [associations]
symbol:puf-11 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009792 GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0000003 GO:GO:0003723 EMBL:FO081731
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
RefSeq:NP_741425.1 ProteinModelPortal:Q8IU00 SMR:Q8IU00
IntAct:Q8IU00 STRING:Q8IU00 PaxDb:Q8IU00 EnsemblMetazoa:Y73B6BL.38
GeneID:177406 KEGG:cel:CELE_Y73B6BL.38 UCSC:Y73B6BL.38 CTD:177406
WormBase:Y73B6BL.38 InParanoid:Q8IU00 OMA:HVVKCGG NextBio:896676
Uniprot:Q8IU00
Length = 505
Score = 238 (88.8 bits), Expect = 4.9e-17, P = 4.9e-17
Identities = 54/166 (32%), Positives = 95/166 (57%)
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEE-KVSVFKEVLPHAS---KLMTDVFGNYVIQKFFEH 463
+VEF+ D++G RF+Q+ S + +F++++ + L ++FGN+ +Q+ E
Sbjct: 149 LVEFATDKNGCRFLQEHYPTESDNDIHQKLFRKLVEDRAIFLSLCCNMFGNFFVQRVLEC 208
Query: 464 GSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL-DGHVMRCVRD 522
+ ++++ L E L + L L CRVIQ A++ +++H ++L LEL D +++R D
Sbjct: 209 SNTEEQEILTEHLASDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLELRDTYLVRLSID 268
Query: 523 QNGNHVIQKCIECVPAEKIEFIISAFRGQ--VATLSTHPYGCRVIQ 566
QNGNHVIQK ++ +P F++ F + + YGCRVIQ
Sbjct: 269 QNGNHVIQKIVKTLPVSAWSFVVEFFADDDNLIHVCQDKYGCRVIQ 314
>TAIR|locus:2011360 [details] [associations]
symbol:PUM10 "pumilio 10" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00544215 PIR:F86479
RefSeq:NP_174813.1 UniGene:At.51962 ProteinModelPortal:Q9LP21
SMR:Q9LP21 PRIDE:Q9LP21 EnsemblPlants:AT1G35750.1 GeneID:840480
KEGG:ath:AT1G35750 TAIR:At1g35750 HOGENOM:HOG000124802
InParanoid:Q9LP21 OMA:GFEEMMA PhylomeDB:Q9LP21
Genevestigator:Q9LP21 Uniprot:Q9LP21
Length = 528
Score = 233 (87.1 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 61/212 (28%), Positives = 104/212 (49%)
Query: 367 WQGQRTFEGQRTFE-----DSKKHSFLEELKSSNAQKFELS---DIAGRIVEFSVDQHGS 418
++G FEG R + + S+ +E K + +L +I G + + DQ G
Sbjct: 169 FKGSLMFEGIRVSQILAAMEGSGASYPDEPKINGGLPLDLVSMVEIYGSVNLMARDQIGC 228
Query: 419 RFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVG 478
R +Q+ +E + + +F E++ H +L D GNY++QK +QR + L
Sbjct: 229 RALQKLVEEGTVLDSKVIFLEIIDHVVELSMDPLGNYIVQKLLVVSDEEQRTMIVSVLTS 288
Query: 479 ---QVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIE 534
+++ + L G RVIQK ++ ++ Q+ LV L+ + V D NG HV+Q C+E
Sbjct: 289 KPRELIKICLNTNGTRVIQKMIKTVKTKQQIALVKSALEPGFLVLVNDSNGYHVLQSCLE 348
Query: 535 CVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ +F++ A A L+TH YGC V+Q
Sbjct: 349 FLVPNDNKFVVEAATEYCAQLATHQYGCYVLQ 380
Score = 149 (57.5 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 41/161 (25%), Positives = 79/161 (49%)
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-PHASKLMTDVFGNYVIQKFFEHGSP 466
+++ ++ +G+R IQ+ ++ ++++++ K L P L+ D G +V+Q E P
Sbjct: 293 LIKICLNTNGTRVIQKMIKTVKTKQQIALVKSALEPGFLVLVNDSNGYHVLQSCLEFLVP 352
Query: 467 DQRKELAEKLVGQVLPLSLQMYGCRVIQKAL-EVIELHQKSQLVLELDGHVMRCVRDQNG 525
+ K + E L+ YGC V+Q +L + L Q +LV E+ +R +D G
Sbjct: 353 NDNKFVVEAATEYCAQLATHQYGCYVLQCSLINTVGL-QHERLVAEISRDSLRLSQDPFG 411
Query: 526 NHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
N+V+Q C+ + ++ FR L+T + VI+
Sbjct: 412 NYVVQ-CLIDQQVSSVNLLLP-FRTHCIELATQKFSSHVIE 450
>CGD|CAL0000028 [details] [associations]
symbol:MPT5 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045947 "negative regulation of
translational initiation" evidence=IEA] [GO:1900153 "positive
regulation of nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0030674 "protein binding, bridging"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 CGD:CAL0000028
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG5099
RefSeq:XP_722196.1 RefSeq:XP_722310.1 ProteinModelPortal:Q5AKY7
GeneID:3636032 GeneID:3636205 KEGG:cal:CaO19.12458
KEGG:cal:CaO19.4991 Uniprot:Q5AKY7
Length = 938
Score = 233 (87.1 bits), Expect = 5.9e-16, P = 5.9e-16
Identities = 54/186 (29%), Positives = 99/186 (53%)
Query: 389 EELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHC---SAEEKVS----VFKEVL 441
E L S N K L+ + I++ + DQ+G RF+Q+K++ + + +++ +F ++
Sbjct: 269 EYLASIN--KLPLTQLKSEILKLAKDQYGCRFLQKKIDESLVPNYQVRLANFEIIFNQIY 326
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
H +L+ D FGNY+IQK + + L E L + +S+ +G R +QK ++ +
Sbjct: 327 SHVYELIVDPFGNYLIQKLIVYCNESNLDLLMEILQYNLFQISINQHGTRALQKIIDSLN 386
Query: 502 -LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPY 560
HQ L+ L +++ ++D NGNHVIQK + +FI + + ++TH +
Sbjct: 387 NSHQLGLLIKGLKPYIIELIKDLNGNHVIQKILNKYEPPDCQFIYDSIIDDLYIVATHKH 446
Query: 561 GCRVIQ 566
GC V+Q
Sbjct: 447 GCCVLQ 452
Score = 150 (57.9 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 34/130 (26%), Positives = 72/130 (55%)
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVF-KEVLPHASKLMTDVFGNYVIQKFFEHGSP 466
+ + S++QHG+R +Q+ ++ + ++ + K + P+ +L+ D+ GN+VIQK P
Sbjct: 365 LFQISINQHGTRALQKIIDSLNNSHQLGLLIKGLKPYIIELIKDLNGNHVIQKILNKYEP 424
Query: 467 DQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQK---SQLVLELDGHVMRCVRDQ 523
+ + + ++ + ++ +GC V+QK L + L Q S+ +L+ + + + DQ
Sbjct: 425 PDCQFIYDSIIDDLYIVATHKHGCCVLQKCLNHVTLQQLGEFSRAILKFENFKL-LINDQ 483
Query: 524 NGNHVIQKCI 533
GN+V+Q I
Sbjct: 484 FGNYVLQYLI 493
>TAIR|locus:2138258 [details] [associations]
symbol:PUM11 "pumilio 11" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AL161513 eggNOG:COG5099 EMBL:AL161813 HOGENOM:HOG000124802
IPI:IPI00541594 PIR:A85089 RefSeq:NP_192624.2 UniGene:At.54217
ProteinModelPortal:Q9LDW3 SMR:Q9LDW3 EnsemblPlants:AT4G08840.1
GeneID:826455 KEGG:ath:AT4G08840 TAIR:At4g08840 InParanoid:Q9LDW3
OMA:MSISDER PhylomeDB:Q9LDW3 Genevestigator:Q9LDW3 Uniprot:Q9LDW3
Length = 556
Score = 221 (82.9 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 58/196 (29%), Positives = 100/196 (51%)
Query: 375 GQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV 434
G R + S K + K + + D G + + DQ G R +Q+ ++ + + +
Sbjct: 216 GSRELDGSAK---CMKNKEDSLDLASMVDSYGSVYLMAKDQLGCRLLQKFVDEGNFVDVM 272
Query: 435 SVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLV---GQVLPLSLQMYGCR 491
+FKEV+ + +L TD FGNY+IQK E + +QR ++ +L G ++ +S+ YG R
Sbjct: 273 IIFKEVINNVIELGTDPFGNYLIQKLIEVCNEEQRTQILIRLTSKPGLLVKISINNYGTR 332
Query: 492 VIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRG 550
V+QK +E + ++ LV L + R+ NGNHVI C++ +FI+ A
Sbjct: 333 VVQKLIETVTTKEQISLVKSALVPGFLSLFRELNGNHVILNCLKFFSPNDNKFILEAATK 392
Query: 551 QVATLSTHPYGCRVIQ 566
++T +GC V+Q
Sbjct: 393 FCIEIATTRHGCCVLQ 408
Score = 170 (64.9 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 44/169 (26%), Positives = 87/169 (51%)
Query: 401 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-PHASKLMTDVFGNYVIQK 459
L+ G +V+ S++ +G+R +Q+ +E + +E++S+ K L P L ++ GN+VI
Sbjct: 314 LTSKPGLLVKISINNYGTRVVQKLIETVTTKEQISLVKSALVPGFLSLFRELNGNHVILN 373
Query: 460 FFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRC 519
+ SP+ K + E + ++ +GC V+Q+ + Q +LV E+ + +
Sbjct: 374 CLKFFSPNDNKFILEAATKFCIEIATTRHGCCVLQRCVSYSVGEQHEKLVDEISRNSLLL 433
Query: 520 VRDQNGNHVIQKCIECVPAEKIEFIISAF--RGQVATLSTHPYGCRVIQ 566
+D GN+++Q IE +K+ + F RG L+T +G V++
Sbjct: 434 AQDPFGNYLVQYIIE----KKVGGVNVLFELRGNYVKLATQKFGSHVVE 478
Score = 121 (47.7 bits), Expect = 0.00047, P = 0.00047
Identities = 51/190 (26%), Positives = 81/190 (42%)
Query: 385 HSFLEELK--SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLP 442
H L LK S N KF L +E + +HG +Q+ + + E+ + E+
Sbjct: 369 HVILNCLKFFSPNDNKFILEAATKFCIEIATTRHGCCVLQRCVSYSVGEQHEKLVDEISR 428
Query: 443 HASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIEL 502
++ L D FGNY++Q E L E L G + L+ Q +G V++K L
Sbjct: 429 NSLLLAQDPFGNYLVQYIIEK-KVGGVNVLFE-LRGNYVKLATQKFGSHVVEKCLRYYP- 485
Query: 503 HQKSQLVLELDGHVMR---CVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
+SQ+V EL V+ ++D N+VIQ + ++ R + L P
Sbjct: 486 ESRSQIVNELVS-VLNFGYLLQDPYANYVIQCALSKTKGFVRASLVEKVR-RYENLKMTP 543
Query: 560 YGCRVIQPHN 569
Y C+ I N
Sbjct: 544 Y-CKRIFSKN 552
>WB|WBGene00001402 [details] [associations]
symbol:fbf-2 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=IGI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IPI] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0030154 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011 GO:GO:0007283
GO:GO:0051729 GO:GO:0040035 GO:GO:0003730 GO:GO:0045132
GO:GO:0040027 GO:GO:0040022 GO:GO:0043186 eggNOG:COG5099
GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078 EMBL:FO080717
PIR:T16128 RefSeq:NP_495220.1 PDB:3K5Q PDB:3K5Y PDB:3K5Z PDB:3K61
PDB:3K62 PDB:3K64 PDB:3QG9 PDB:3QGB PDB:3QGC PDB:3V6Y PDB:3V74
PDBsum:3K5Q PDBsum:3K5Y PDBsum:3K5Z PDBsum:3K61 PDBsum:3K62
PDBsum:3K64 PDBsum:3QG9 PDBsum:3QGB PDBsum:3QGC PDBsum:3V6Y
PDBsum:3V74 ProteinModelPortal:Q09312 SMR:Q09312 MINT:MINT-3385835
STRING:Q09312 EnsemblMetazoa:F21H12.5 GeneID:174017
KEGG:cel:CELE_F21H12.5 UCSC:F21H12.5 CTD:174017 WormBase:F21H12.5
InParanoid:Q09312 OMA:FALENID EvolutionaryTrace:Q09312
NextBio:882143 Uniprot:Q09312
Length = 632
Score = 222 (83.2 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 54/186 (29%), Positives = 104/186 (55%)
Query: 398 KFELSDI--AGRIVEFSVDQHGSRFIQQKLE-HCSAEEKVSVFKEVLPHAS---KLMTDV 451
+ LS++ +G +++F+VD+ G +F+++ ++ ++ +K +F++V+ KL T++
Sbjct: 182 RLSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNI 241
Query: 452 FGNYVIQKFF-------EHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQ 504
FGNY++Q + G ++++L + Q+ + L + CRVIQ +L+ ++L
Sbjct: 242 FGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSL 301
Query: 505 KSQLVLEL--DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIIS--AFRGQVATLSTHPY 560
+LV L D ++ DQN NHVIQK + +P + EFI+ A + + + Y
Sbjct: 302 ACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKY 361
Query: 561 GCRVIQ 566
GCRV+Q
Sbjct: 362 GCRVVQ 367
>POMBASE|SPAC4G8.03c [details] [associations]
symbol:SPAC4G8.03c "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC4G8.03c GO:GO:0005794 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 PIR:T38847 RefSeq:NP_593062.1
ProteinModelPortal:Q09829 EnsemblFungi:SPAC4G8.03c.1 GeneID:2543684
KEGG:spo:SPAC4G8.03c OrthoDB:EOG4QJVZ9 NextBio:20804690
Uniprot:Q09829
Length = 780
Score = 222 (83.2 bits), Expect = 7.1e-15, P = 7.1e-15
Identities = 50/176 (28%), Positives = 91/176 (51%)
Query: 392 KSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDV 451
KS + Q L G + DQ+G R++Q+ L+ F E+ +LM D
Sbjct: 451 KSQDNQIPHLVGFLGHLSTICKDQYGCRYLQKLLDENPKVNASLFFPEIRQSVVQLMIDP 510
Query: 452 FGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE 511
FGNY+ QK F + S +Q+ + + ++ + +YG R +Q ++ + +++ L+L+
Sbjct: 511 FGNYMCQKLFVYASREQKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLK 570
Query: 512 LDGHVMRCVR-DQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ + + D NG HV+QKCI P EK+E + + + TL+T+ +GC ++Q
Sbjct: 571 IIIPSLTTLACDNNGTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQ 626
Score = 153 (58.9 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 42/176 (23%), Positives = 86/176 (48%)
Query: 393 SSNAQKFE-LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVF-KEVLPHASKLMTD 450
+S QK L+ I IV+ + +G+R +Q ++ ++ E++S+ K ++P + L D
Sbjct: 523 ASREQKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLACD 582
Query: 451 VFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVL 510
G +V+QK P++ + L + ++ L+ +GC ++Q+ L+ + +LV
Sbjct: 583 NNGTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNGDIQERLVN 642
Query: 511 ELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ + V++ GN+++Q +E E II F G + LS + I+
Sbjct: 643 SIIKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFSSNAIE 698
Score = 120 (47.3 bits), Expect = 0.00095, P = 0.00095
Identities = 28/140 (20%), Positives = 67/140 (47%)
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPD 467
++ + ++HG +Q+ L+ + + + + ++ L+ + +GNY++Q E
Sbjct: 612 LITLATNRHGCCILQRCLDRTNGDIQERLVNSIIKSCLLLVQNAYGNYLVQHVLELNIQP 671
Query: 468 QRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDG--HVMRCVRDQNG 525
+ + EK G + LSLQ + I++ + + Q++ E ++ + + D
Sbjct: 672 YTERIIEKFFGNICKLSLQKFSSNAIEQCIRTASPSTREQMLQEFLSFPNIEQLLDDCYA 731
Query: 526 NHVIQKCIECVPAEKIEFII 545
N+V+Q+ + V E +F+I
Sbjct: 732 NYVMQRFLN-VADESQKFLI 750
>WB|WBGene00001401 [details] [associations]
symbol:fbf-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IGI;IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=IGI] [GO:0043073 "germ cell nucleus"
evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0010608 "posttranscriptional regulation of gene expression"
evidence=IGI] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0009792
GO:GO:0006898 GO:GO:0048471 GO:GO:0030154 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0007283 GO:GO:0051729 GO:GO:0003730 GO:GO:0007548
GO:GO:0040027 GO:GO:0040022 GO:GO:0043073 EMBL:FO081202
RefSeq:NP_495216.1 ProteinModelPortal:Q9N5M6 SMR:Q9N5M6
IntAct:Q9N5M6 STRING:Q9N5M6 EnsemblMetazoa:H12I13.4 GeneID:174016
KEGG:cel:CELE_H12I13.4 UCSC:H12I13.4 CTD:174016 WormBase:H12I13.4
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
InParanoid:Q9N5M6 OMA:TADSINV NextBio:882139 Uniprot:Q9N5M6
Length = 614
Score = 216 (81.1 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 53/186 (28%), Positives = 104/186 (55%)
Query: 398 KFELSDI--AGRIVEFSVDQHGSRFIQQKLE-HCSAEEKVSVFKEVLPHAS---KLMTDV 451
+ LS++ +G +++F+VD+ G +F+++ ++ ++ +K +F++V+ KL T++
Sbjct: 180 RLSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNI 239
Query: 452 FGNYVIQKF-------FEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQ 504
FGNY +Q+ ++ + ++++L + Q+ + L + CRVIQ +L+ ++L
Sbjct: 240 FGNYFVQEIIGMSLTTYDDDNIKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSL 299
Query: 505 KSQLVLEL--DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIIS--AFRGQVATLSTHPY 560
+LV L D ++ DQN NHVIQK + +P + EFI+ A + + Y
Sbjct: 300 ACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICFDKY 359
Query: 561 GCRVIQ 566
GCRV+Q
Sbjct: 360 GCRVVQ 365
>UNIPROTKB|Q9N5M6 [details] [associations]
symbol:fbf-1 "Fem-3 mRNA-binding factor 1" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0009792
GO:GO:0006898 GO:GO:0048471 GO:GO:0030154 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0007283 GO:GO:0051729 GO:GO:0003730 GO:GO:0007548
GO:GO:0040027 GO:GO:0040022 GO:GO:0043073 EMBL:FO081202
RefSeq:NP_495216.1 ProteinModelPortal:Q9N5M6 SMR:Q9N5M6
IntAct:Q9N5M6 STRING:Q9N5M6 EnsemblMetazoa:H12I13.4 GeneID:174016
KEGG:cel:CELE_H12I13.4 UCSC:H12I13.4 CTD:174016 WormBase:H12I13.4
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
InParanoid:Q9N5M6 OMA:TADSINV NextBio:882139 Uniprot:Q9N5M6
Length = 614
Score = 216 (81.1 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 53/186 (28%), Positives = 104/186 (55%)
Query: 398 KFELSDI--AGRIVEFSVDQHGSRFIQQKLE-HCSAEEKVSVFKEVLPHAS---KLMTDV 451
+ LS++ +G +++F+VD+ G +F+++ ++ ++ +K +F++V+ KL T++
Sbjct: 180 RLSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNI 239
Query: 452 FGNYVIQKF-------FEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQ 504
FGNY +Q+ ++ + ++++L + Q+ + L + CRVIQ +L+ ++L
Sbjct: 240 FGNYFVQEIIGMSLTTYDDDNIKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSL 299
Query: 505 KSQLVLEL--DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIIS--AFRGQVATLSTHPY 560
+LV L D ++ DQN NHVIQK + +P + EFI+ A + + Y
Sbjct: 300 ACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICFDKY 359
Query: 561 GCRVIQ 566
GCRV+Q
Sbjct: 360 GCRVVQ 365
>CGD|CAL0004399 [details] [associations]
symbol:orf19.5381 species:5476 "Candida albicans" [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0001308 "negative
regulation of chromatin silencing involved in replicative cell
aging" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
CGD:CAL0004399 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AACQ01000050 RefSeq:XP_717758.1
ProteinModelPortal:Q5A835 GeneID:3640530 KEGG:cal:CaO19.5381
Uniprot:Q5A835
Length = 783
Score = 216 (81.1 bits), Expect = 8.6e-14, Sum P(3) = 8.6e-14
Identities = 47/135 (34%), Positives = 79/135 (58%)
Query: 400 ELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQK 459
+L D G I+ DQHG RF+Q++L + +F E+ A +LM D FGNY+IQK
Sbjct: 440 KLQDFTGSILTLCKDQHGCRFLQREL--INETNATLIFNEIYFKAVELMIDPFGNYLIQK 497
Query: 460 FFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-LDGHVMR 518
F + +QR L + ++ ++L +G R +QK ++VIE +++ +++ L +++
Sbjct: 498 LFTMINLEQRLVLINQCSNELFRIALDPHGTRSLQKLIDVIETNEEIEIITRNLYSNIVV 557
Query: 519 CVRDQNGNHVIQKCI 533
RD NGNHV+QK +
Sbjct: 558 LSRDLNGNHVVQKIL 572
Score = 141 (54.7 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 39/183 (21%), Positives = 86/183 (46%)
Query: 395 NAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGN 454
N +F I ++ + +HG +Q+ L++ + ++ + +E+ H KL D +GN
Sbjct: 596 NQNQFIFDIIQANLLYIACHRHGCCVLQRCLDYGNKQQCQQLSQEIAKHTIKLSLDPYGN 655
Query: 455 YVIQKF---FEHGSPDQRKE------LAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQK 505
YV+Q + G Q + + +++ + LSL +G VI+K L++ + +
Sbjct: 656 YVVQYVLNKYSVGGDAQNTDNQVIDIIIQEIKSNFIQLSLHKFGSNVIEKCLKISSISKD 715
Query: 506 ---SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGC 562
+ +VL+ + + D GN+V+Q ++ E+ E + + + + P+G
Sbjct: 716 LIDNLIVLDHGQAFNQLLNDPFGNYVLQTSLDVANLEQFEQLSKILLPLLPNIKSTPHGR 775
Query: 563 RVI 565
R++
Sbjct: 776 RIL 778
Score = 42 (19.8 bits), Expect = 8.6e-14, Sum P(3) = 8.6e-14
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 130 NNAHNAGTYMPSGNPFYPSF 149
NN H AG+ S N PSF
Sbjct: 44 NNTHGAGSNSSSSND--PSF 61
Score = 41 (19.5 bits), Expect = 8.6e-14, Sum P(3) = 8.6e-14
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 174 PPFVAGYPSQGPVPMP 189
PP G PS P P P
Sbjct: 270 PPHSMGLPSFSPFPHP 285
Score = 39 (18.8 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 31 SNNGPAAVSF--SSSPCPDGTETSRNPRIDDT 60
S+N P+ ++ +S+ C + TE+ N I+ T
Sbjct: 55 SSNDPSFLNGENTSANCTNSTESDDNELIEPT 86
>POMBASE|SPCC1682.08c [details] [associations]
symbol:SPCC1682.08c "RNA-binding protein Mcp2"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPCC1682.08c GO:GO:0007126 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 eggNOG:COG5099
EMBL:AB189990 PIR:T41065 RefSeq:NP_587801.1
ProteinModelPortal:O74438 EnsemblFungi:SPCC1682.08c.1
GeneID:2539137 KEGG:spo:SPCC1682.08c OMA:FNDSANG OrthoDB:EOG4QNR4B
NextBio:20800309 Uniprot:O74438
Length = 703
Score = 196 (74.1 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 59/223 (26%), Positives = 106/223 (47%)
Query: 355 QGLNRNTGIYSGWQGQRTFEGQRTFEDSKKH---SFLEELKSSNAQKFELSDIAGRIVEF 411
+G+N + S W+ E + + ++ NA ++ + I +I+
Sbjct: 312 KGVNSAASLQSIWETMNNSNPSVIPESTSSREPAARYRKISERNAV-YDWNVIIDKII-V 369
Query: 412 SVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKE 471
S DQ S F+QQKL+ S + K ++ ++ LM + FGN+++Q+ FEHG+ Q ++
Sbjct: 370 SNDQQSSIFLQQKLKISSYDMKQNIVDSIISQIHPLMLNRFGNFLVQRCFEHGTAPQIRQ 429
Query: 472 LAEKLVGQVLPLSLQMYGCRVIQKAL----EVIELHQKSQLVLELDGHVMRCVRDQNGNH 527
+ ++G +L L+ +GC V+QKA+ E I+L +L L +D +M H
Sbjct: 430 MGSAMLGNMLKLATDPFGCHVVQKAIDNVTEDIKLAMMDELFLTIDVTIMH----HYACH 485
Query: 528 VIQKCIEC----VPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
V QK E P + + +A RG+ ++ G V+Q
Sbjct: 486 VWQKLFETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQ 528
Score = 169 (64.5 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 44/170 (25%), Positives = 87/170 (51%)
Query: 404 IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEH 463
+ G+ E +V ++GS +Q E+C ++K +E++ H + +GN+V+Q E+
Sbjct: 510 LRGKWHEVAVGENGSLVVQNMFENCVEKDKRECIEEIIFHLDGIARGQWGNWVVQHMVEN 569
Query: 464 GSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALE-----VIELHQKSQLVLELDGH--- 515
G + K + + L+ + + S+ + +VI+KA++ I L+ K +D
Sbjct: 570 GQGEDLKRVIDALLNRAVEFSIDQFASKVIEKAIKSGPKNFISLYLKQITNARVDRTRQP 629
Query: 516 VMRCVRDQNGNHVIQKCIEC-VPAEKIEFIISAFRGQVATLSTHPYGCRV 564
++ DQ GN++IQ+ I+ PAEK +I+ + + +L YG +V
Sbjct: 630 LIDIASDQYGNYLIQQIIQLGQPAEK-NLVITHIKKHMVSLRGSKYGQKV 678
Score = 45 (20.9 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 276 EPIVAAYMGDQNLQSSLNGGP 296
E I++A ++NL S+ NG P
Sbjct: 182 ENILSASSSEENLNSNRNGDP 202
>POMBASE|SPAC4G9.05 [details] [associations]
symbol:mpf1 "meiotic PUF family protein 1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPAC4G9.05 GO:GO:0007126 GO:GO:0005737 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0003729 eggNOG:COG5099
OrthoDB:EOG4QNR4B EMBL:AB248102 PIR:T38864 RefSeq:NP_593687.1
ProteinModelPortal:Q10238 EnsemblFungi:SPAC4G9.05.1 GeneID:2543134
KEGG:spo:SPAC4G9.05 NextBio:20804161 Uniprot:Q10238
Length = 581
Score = 180 (68.4 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 55/193 (28%), Positives = 97/193 (50%)
Query: 379 FEDSKKHSFLEELK-SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVF 437
FE + HS E L+ S+ K++ + +I+ F DQ S +QQ+L++ E+ +++
Sbjct: 233 FEKNSVHSGKETLQYSATISKWKA--MIEQII-FQNDQAASLSLQQQLKNEDIEDNINLI 289
Query: 438 KEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL 497
+LP + LM + FGN++IQK FE+ + Q + + L V LS+ +G V+QK+L
Sbjct: 290 NTILPFSVTLMKNKFGNFLIQKCFEYSTEAQLQSFSYFLKKHVKELSIDAFGSHVLQKSL 349
Query: 498 EVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAF----RGQVA 553
E+ + L+ EL + + ++ HV QK E ++ I F +G+
Sbjct: 350 EIYPERFTNNLIEELIECLPATLMQRHSCHVWQKFFETRRKSLVDGIFDHFNKKMQGKWL 409
Query: 554 TLSTHPYGCRVIQ 566
+S G V+Q
Sbjct: 410 QVSVSEMGSLVVQ 422
Score = 173 (66.0 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 45/197 (22%), Positives = 94/197 (47%)
Query: 376 QRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS 435
Q+ FE +K S ++ + +K + G+ ++ SV + GS +Q E+C ++K +
Sbjct: 382 QKFFETRRK-SLVDGIFDHFNKKMQ-----GKWLQVSVSEMGSLVVQTIFENCKEKDKRT 435
Query: 436 VFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQK 495
E++ + +++ +GN+VIQ EHGS ++ + L+ +V S Y +V+++
Sbjct: 436 CLDEIINNMDQIICGQWGNWVIQHIIEHGSEPDKQRILNSLLKEVESYSTNRYASKVVER 495
Query: 496 ALEVIELHQKSQLVLELDG--------HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISA 547
AL V + + V E+ + +Q GN+++Q ++ +I +
Sbjct: 496 ALRVCHVTFFDRYVKEITTPQNELPTIFLQEIASNQYGNYIVQYLLQVATPSQINLMAEH 555
Query: 548 FRGQVATLSTHPYGCRV 564
+ + +L H YG R+
Sbjct: 556 LKKHMVSLRGHKYGQRI 572
>WB|WBGene00004241 [details] [associations]
symbol:puf-5 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P
granule" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0035188
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0048477
GO:GO:0003723 GO:GO:0000910 EMBL:Z49967 GO:GO:0043186
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
PIR:T22634 RefSeq:NP_495814.1 ProteinModelPortal:Q20757 SMR:Q20757
STRING:Q20757 PaxDb:Q20757 EnsemblMetazoa:F54C9.8 GeneID:174373
KEGG:cel:CELE_F54C9.8 UCSC:F54C9.8 CTD:174373 WormBase:F54C9.8
InParanoid:Q20757 OMA:MISICIS NextBio:883756 Uniprot:Q20757
Length = 553
Score = 179 (68.1 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 44/176 (25%), Positives = 88/176 (50%)
Query: 401 LSDIA--GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVF----GN 454
L D+ G +++F++D+ G +F+++ E V + L + T + GN
Sbjct: 144 LQDVVSNGSLIDFAMDRTGVKFLERHFPEDHDNEMHFVLFDKLTEQGAVFTSLCRSAAGN 203
Query: 455 YVIQKFFEHGSPDQRKELAEKLVGQ-VLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
++IQKF EH + D+++ L K+ ++ + L + CRV+Q +++ ++ +LV ++
Sbjct: 204 FIIQKFVEHATLDEQERLVRKMCDNGLIEMCLDKFACRVVQMSIQKFDVSIAMKLVEKIS 263
Query: 514 G-HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAF-RGQ-VATLSTHPYGCRVIQ 566
+ DQ HV+QK ++ +P F + R + T+ YGCR++Q
Sbjct: 264 SLDFLPLCTDQCAIHVLQKVVKLLPISAWSFFVKFLCRDDNLMTVCQDKYGCRLVQ 319
>WB|WBGene00004243 [details] [associations]
symbol:puf-7 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IGI]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0035188 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0048477 GO:GO:0003723
GO:GO:0000910 GO:GO:0007281 eggNOG:COG5099
GeneTree:ENSGT00390000017241 EMBL:FO080145 HOGENOM:HOG000113900
PIR:T32538 RefSeq:NP_500820.1 PDB:3V71 PDBsum:3V71
ProteinModelPortal:O44169 SMR:O44169 STRING:O44169
EnsemblMetazoa:B0273.2.1 EnsemblMetazoa:B0273.2.2 GeneID:177332
KEGG:cel:CELE_B0273.2 UCSC:B0273.2.1 CTD:177332 WormBase:B0273.2
InParanoid:O44169 OMA:HAMQRIR NextBio:896304 Uniprot:O44169
Length = 485
Score = 174 (66.3 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 45/177 (25%), Positives = 91/177 (51%)
Query: 401 LSDIA--GRIVEFSVDQHGSRFIQQKLEHCSAEE-KVSVFKEVLPHASKLMTDVF----G 453
L D+ G++++F++D G +F++ S ++ + +VF E ++ L + G
Sbjct: 84 LEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVF-EKFTESTTLFVGLCHSRNG 142
Query: 454 NYVIQKFFEHGSPDQRKELAEKLV-GQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL 512
N+++QK E +P +++EL +++ G +L + + CRV+Q AL+ + QL+ EL
Sbjct: 143 NFIVQKLVELATPAEQRELLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQEL 202
Query: 513 DGHVMRCV-RDQNGNHVIQKCIECVPAEKIEFIISAFRG--QVATLSTHPYGCRVIQ 566
+ + DQ HVIQ+ ++ +P + F + + + YGCR++Q
Sbjct: 203 STFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYGCRLVQ 259
>WB|WBGene00004242 [details] [associations]
symbol:puf-6 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0035188 GO:GO:0005737 GO:GO:0008285 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0048477
GO:GO:0000910 GO:GO:0003730 GO:GO:0007281 GO:GO:0006402
eggNOG:COG5099 GeneTree:ENSGT00390000017241 EMBL:Z81507 PIR:T21080
RefSeq:NP_496773.1 ProteinModelPortal:O01322 SMR:O01322
STRING:O01322 EnsemblMetazoa:F18A11.1.1 EnsemblMetazoa:F18A11.1.2
GeneID:174947 KEGG:cel:CELE_F18A11.1 UCSC:F18A11.1.1 CTD:174947
WormBase:F18A11.1 HOGENOM:HOG000113900 InParanoid:O01322
OMA:RDIANHI NextBio:886152 Uniprot:O01322
Length = 485
Score = 173 (66.0 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 44/170 (25%), Positives = 88/170 (51%)
Query: 406 GRIVEFSVDQHGSRFIQQKLEHCSAEE-KVSVFKEVLPHASKLMTDVF----GNYVIQKF 460
G +++F++D G +F++ S ++ + +VF E L ++ L + GN+++QK
Sbjct: 91 GLLIDFAIDPSGVKFLEANYPLDSEDQIRKAVF-EKLTESTTLFVGLCHSRNGNFIVQKL 149
Query: 461 FEHGSPDQRKELAEKLV-GQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRC 519
E +P +++EL +++ G +L + + CRV+Q AL+ + QL+ EL +
Sbjct: 150 VELATPAEQRELLRQMIDGGLLVMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAA 209
Query: 520 V-RDQNGNHVIQKCIECVPAEKIEFIISAFRG--QVATLSTHPYGCRVIQ 566
+ DQ HVIQ+ ++ +P + F + + + YGCR++Q
Sbjct: 210 MCTDQISIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYGCRLVQ 259
>POMBASE|SPBP35G2.14 [details] [associations]
symbol:SPBP35G2.14 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
PomBase:SPBP35G2.14 GO:GO:0005829 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG5099 OrthoDB:EOG4MWCFG RefSeq:NP_595389.2
EnsemblFungi:SPBP35G2.14.1 GeneID:2541323 NextBio:20802433
Uniprot:Q9P789
Length = 1065
Score = 149 (57.5 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 42/177 (23%), Positives = 85/177 (48%)
Query: 400 ELSDIAGRIVEFS-------VDQHGSRFIQQKLEH--CSAEEKVSVFKEVLPHASKLMTD 450
EL+D A +I S ++ R +++++++ C+ EE + L S L +D
Sbjct: 725 ELTDFAAQIPSISKAFSSRRLNAPKLRQVRKRIDNGLCTQEEVEDIAINWLDEVSDLSSD 784
Query: 451 VFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVL 510
GN V+QK F++ S ++ + E++ + + + G QK ++V + +L+
Sbjct: 785 HLGNTVVQKLFDYCSDPVKEMMLERIAPHLAQIGIHKNGTWAAQKIVDVASTEAQMRLIA 844
Query: 511 E-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ L ++ DQ GN+V+Q C++ A +F+ A Q ++ YG R ++
Sbjct: 845 KHLQPYIPLLFADQFGNYVVQTCLK-FGAPMNDFVFEAILNQFWVIAQSRYGSRAVR 900
Score = 119 (46.9 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 34/170 (20%), Positives = 81/170 (47%)
Query: 393 SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVF-KEVLPHASKLMTDV 451
S ++ L IA + + + ++G+ Q+ ++ S E ++ + K + P+ L D
Sbjct: 799 SDPVKEMMLERIAPHLAQIGIHKNGTWAAQKIVDVASTEAQMRLIAKHLQPYIPLLFADQ 858
Query: 452 FGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE 511
FGNYV+Q + G+P + E ++ Q ++ YG R ++ LE ++ ++ ++++
Sbjct: 859 FGNYVVQTCLKFGAP-MNDFVFEAILNQFWVIAQSRYGSRAVRACLESPDVTEEQRVLVA 917
Query: 512 --LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISA-FRGQVATLSTH 558
+ + + + NG ++ +E + I +++ F + + TH
Sbjct: 918 AAITVYSVHLAMNGNGTLLLTYLVENMNYPHIPILLTRRFVQDIVRVCTH 967
Score = 53 (23.7 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 24/91 (26%), Positives = 36/91 (39%)
Query: 174 PPFVAGYPSQGPVPMPFDATSGSSF-NIRTT-SVSTGEGIPHIGSTQHQKFYGHQGLMLQ 231
PPF GYP +P + S SSF + T S S G I + +
Sbjct: 277 PPF--GYPPTTSSALPNASGSSSSFFGLPTAVSASAGTSFSDISPAAPKASLENNIASNA 334
Query: 232 SPFVDPLHMQYFQHPFGDAYNASVQHRLASS 262
S ++P+ + +F G ++ H ASS
Sbjct: 335 SSLLNPVGLDHFSAASG--WSRDFNHLPASS 363
Score = 44 (20.5 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 16/62 (25%), Positives = 25/62 (40%)
Query: 353 LPQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFS 412
LP G++ T + + + T R S KHS S K L ++ G+ + F
Sbjct: 599 LPSGVSATT-VATTFSAYGTVSSIRML--SHKHSAFLNFDSVETAKHVLEELNGKRIFFG 655
Query: 413 VD 414
D
Sbjct: 656 SD 657
>WB|WBGene00004240 [details] [associations]
symbol:puf-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HOGENOM:HOG000016078 EMBL:FO081656 PIR:T33752 RefSeq:NP_500301.1
UniGene:Cel.28747 ProteinModelPortal:Q8I723 SMR:Q8I723
EnsemblMetazoa:M4.2 GeneID:191754 KEGG:cel:CELE_M4.2 UCSC:M4.2
CTD:191754 WormBase:M4.2 InParanoid:Q8I723 NextBio:950224
Uniprot:Q8I723
Length = 420
Score = 96 (38.9 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 494 QKAL-EVIELHQKSQLVLELDGHVMR--CVRDQNGNHVIQKCIECVPAEKIEFIISAFRG 550
QK + E + + S+L EL G + C+ DQNGNHVIQ+ ++ +P +F++ F
Sbjct: 224 QKIIVEYLAIVLASRLASELRGVDLTHACI-DQNGNHVIQQLLKTLPPSSWQFLVEFFSR 282
Query: 551 QV--ATLSTHPYGCRVIQ 566
+ Y CRVIQ
Sbjct: 283 DTNFVEVCEDKYVCRVIQ 300
Score = 90 (36.7 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 37/162 (22%), Positives = 73/162 (45%)
Query: 323 QFPTSPIASPVLPSSPVGSTSQLGLRHEMR-LPQGLN-RNTGIYSGWQGQRTFEGQRTFE 380
Q P +P + + T++ G H +R L G N +++GI++ R+ + T
Sbjct: 77 QRPDTPRYQQRASTPSMTPTARFGY-HGIRPLFNGYNQKHSGIFNS-PANRSIVQKSTLP 134
Query: 381 DSKKHSFLEELKSSNAQKFELSDIA--GRIVEFSVDQHGSRFIQ-QKLEHCSAEEKVSVF 437
+ + + A L D+ ++EF D++G RF+Q Q E C E +F
Sbjct: 135 -----IWASDEHGNVADTVTLDDVIQMDSLMEFMKDKNGCRFLQDQYSEDCHVESHQKIF 189
Query: 438 KEVLPHASKLMTD---VFGNYVIQKFFEHGSPDQRKELAEKL 476
++++ + +FGN+ +Q+ E +++K + E L
Sbjct: 190 EQLVADRVIFLDQCKHMFGNFFVQRVLECSDAEEQKIIVEYL 231
>TAIR|locus:2167771 [details] [associations]
symbol:PUM13 "pumilio 13" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB008267 eggNOG:COG5099 IPI:IPI00522991 RefSeq:NP_199123.1
UniGene:At.55330 ProteinModelPortal:Q9FMH4 SMR:Q9FMH4 PaxDb:Q9FMH4
PRIDE:Q9FMH4 EnsemblPlants:AT5G43090.1 GeneID:834325
KEGG:ath:AT5G43090 TAIR:At5g43090 HOGENOM:HOG000136003
InParanoid:Q9FMH4 OMA:NGERNIW PhylomeDB:Q9FMH4
ProtClustDB:CLSN2686651 Genevestigator:Q9FMH4 Uniprot:Q9FMH4
Length = 527
Score = 135 (52.6 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 45/181 (24%), Positives = 86/181 (47%)
Query: 393 SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQ---KLEHCSAEEKVSVFKEVLPHASKLMT 449
SS ++ L ++ + ++DQ+G +QQ K + E + + EV+ HA KL
Sbjct: 349 SSQCRRL-LEVVSQHCYQIAIDQNGCCLLQQCFDKERVPNHEIRQRLISEVIEHALKLCL 407
Query: 450 DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 509
+ GNYV+Q E + + L KL+ L+ YG V+QK L++ + K +V
Sbjct: 408 NCHGNYVVQYVVELDNQHETDLLVNKLLRNYAHLARNKYGSHVVQKLLKLRGIDSKL-IV 466
Query: 510 LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAF-RGQVATLSTHPYGCRVIQPH 568
++L + + D GN+VIQ V E + ++ + + + + +G ++++
Sbjct: 467 VDLLRGIDTLLLDPFGNYVIQTAW-FVSKEDVRQMLRYYIERNIRLMRCNKFGNKILEKL 525
Query: 569 N 569
N
Sbjct: 526 N 526
>UNIPROTKB|H0YDQ6 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957 ChiTaRS:PUM1
Ensembl:ENST00000530669 Bgee:H0YDQ6 Uniprot:H0YDQ6
Length = 76
Score = 107 (42.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 20/24 (83%), Positives = 21/24 (87%)
Query: 543 FIISAFRGQVATLSTHPYGCRVIQ 566
FII AF+GQV LSTHPYGCRVIQ
Sbjct: 1 FIIDAFKGQVFALSTHPYGCRVIQ 24
>TAIR|locus:2086760 [details] [associations]
symbol:PUM24 "pumilio 24" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] [GO:0001510 "RNA methylation"
evidence=RCA] [GO:0006406 "mRNA export from nucleus" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA]
InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 SUPFAM:SSF48371
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB028608 eggNOG:NOG273657 KO:K14844 EMBL:AY045638
IPI:IPI00521400 RefSeq:NP_566559.1 UniGene:At.5720
ProteinModelPortal:Q9LRZ3 SMR:Q9LRZ3 STRING:Q9LRZ3 PaxDb:Q9LRZ3
PRIDE:Q9LRZ3 EnsemblPlants:AT3G16810.1 GeneID:820934
KEGG:ath:AT3G16810 TAIR:At3g16810 HOGENOM:HOG000070534
InParanoid:Q9LRZ3 OMA:IKHGSAK PhylomeDB:Q9LRZ3
ProtClustDB:CLSN2688458 Genevestigator:Q9LRZ3 Uniprot:Q9LRZ3
Length = 641
Score = 131 (51.2 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 32/107 (29%), Positives = 52/107 (48%)
Query: 406 GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGS 465
G++ E +V SR +Q ++ CS EK +F E+ P L ++ + + IQK + S
Sbjct: 121 GKVPEIAVSHVSSRVLQTCVKFCSQAEKDVLFTELQPQFLNLASNKYAVHFIQKMLDGAS 180
Query: 466 PDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL 512
Q L G V PL ++G V++ A + QK +L+ EL
Sbjct: 181 KQQLAACISSLRGHVAPLLRHVFGSLVVEHAYHLGSAAQKQELLAEL 227
>POMBASE|SPBC56F2.08c [details] [associations]
symbol:SPBC56F2.08c "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
PomBase:SPBC56F2.08c GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166 EMBL:CU329671
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000288 eggNOG:COG5099
OrthoDB:EOG4MWCFG PIR:T40536 RefSeq:NP_596709.1
ProteinModelPortal:O60059 EnsemblFungi:SPBC56F2.08c.1
GeneID:2540913 KEGG:spo:SPBC56F2.08c NextBio:20802028
Uniprot:O60059
Length = 661
Score = 129 (50.5 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 33/138 (23%), Positives = 65/138 (47%)
Query: 431 EEKVSVF-KEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYG 489
+E++ V + +L ++L +D GN V+QKFFE+ S ++ + E++ + + + G
Sbjct: 182 QEEIEVIARSMLDDVAELSSDYLGNTVVQKFFEYCSDPIKEAMLERIAPYLAAIGIHKNG 241
Query: 490 CRVIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAF 548
QK ++V ++ L+++ L + DQ GN+V Q C+ K F+
Sbjct: 242 TWAAQKIIDVASTEKQMDLIVKHLRPYTALLYFDQFGNYVAQCCLR-FKYPKNTFLFEVM 300
Query: 549 RGQVATLSTHPYGCRVIQ 566
+ +G R I+
Sbjct: 301 ARHCCEIGQSRFGARAIR 318
>ASPGD|ASPL0000066087 [details] [associations]
symbol:AN7474 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304
eggNOG:COG5099 OrthoDB:EOG4MWCFG RefSeq:XP_680743.1
ProteinModelPortal:Q5AW56 EnsemblFungi:CADANIAT00000567
GeneID:2869548 KEGG:ani:AN7474.2 HOGENOM:HOG000182368 OMA:RACLESH
Uniprot:Q5AW56
Length = 1175
Score = 128 (50.1 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 39/190 (20%), Positives = 90/190 (47%)
Query: 380 EDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEH--CSAEEKVSVF 437
E +K ++ +++ S E+ IA D R I++++++ CS +E
Sbjct: 619 ETTKINASIQQAISYQEFSDEIPPIAEPNQTRMFDAPRLRDIRKRIDNGNCSIQEIEETA 678
Query: 438 KEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL 497
+LP ++L +D GN V+QK FE+ S ++ + + + + + G QK +
Sbjct: 679 IAMLPEIAELASDYLGNTVVQKLFEYSSEPIKERILVPIAPHLGEIGVHKNGTWAAQKII 738
Query: 498 EVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLS 556
+V + + +++++ L + + DQ GN+V+Q C+ + +F+ ++ ++
Sbjct: 739 DVAKTPAQMRMIVDALRPYTVPLFLDQYGNYVLQCCLR-FGSPYNDFVFETMLSRMWEIA 797
Query: 557 THPYGCRVIQ 566
+G R ++
Sbjct: 798 QGRFGARAMR 807
Score = 52 (23.4 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 154 AGVYPSQYNVGGYALNSA-LFPPFVAGYPSQGPVPMPFDAT--SGSSFNIRT-TSVSTG 208
AG PS+++ G LN A L PFV+ P PF T SG ++ T++ G
Sbjct: 138 AGTVPSRFSPVG-VLNEANLQQPFVSQSSRPTPSTSPFRPTGMSGIDTGVKPPTTIGGG 195
>TAIR|locus:2133534 [details] [associations]
symbol:PUM15 "pumilio 15" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AF076275 eggNOG:COG5099 EMBL:AL161512 IPI:IPI00522940
PIR:T01828 RefSeq:NP_192596.1 UniGene:At.54205
ProteinModelPortal:O81465 SMR:O81465 PRIDE:O81465
EnsemblPlants:AT4G08560.1 GeneID:826417 KEGG:ath:AT4G08560
TAIR:At4g08560 InParanoid:O81465 OMA:ENIRREM PhylomeDB:O81465
Genevestigator:O81465 InterPro:IPR010264 Pfam:PF05938
Uniprot:O81465
Length = 477
Score = 126 (49.4 bits), Expect = 0.00011, P = 0.00011
Identities = 43/169 (25%), Positives = 70/169 (41%)
Query: 409 VEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMT-DVFGNYVIQKFFEHGSPD 467
V V HG+ IQ + +EE++S F E L + S L+T DV + VI F SP
Sbjct: 231 VRLCVHTHGTHAIQGLMRSLCSEEQISRFMETLCYVSLLLTKDVIAHRVILFCFNQFSPS 290
Query: 468 QRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNG-- 525
+ L E +V +++ GC +++K + + L+ E+ +R + G
Sbjct: 291 HTRYLLEVIVQNCYQVAIDQNGCCMLKKLIRQSSRELRDPLIKEIISIAVRLCGNCYGTL 350
Query: 526 --------NHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
N+V+Q + E + G LS YG V+Q
Sbjct: 351 TPKSLLVRNYVVQYLLRLKDYEVTSALSKHLDGNYVQLSYDKYGSHVVQ 399
Score = 118 (46.6 bits), Expect = 0.00080, P = 0.00080
Identities = 37/148 (25%), Positives = 69/148 (46%)
Query: 393 SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVF 452
S + ++ L I + ++DQ+G +++ + S E + + KE++ A +L + +
Sbjct: 288 SPSHTRYLLEVIVQNCYQVAIDQNGCCMLKKLIRQSSRELRDPLIKEIISIAVRLCGNCY 347
Query: 453 G----------NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIEL 502
G NYV+Q + L++ L G + LS YG V+QK LE E
Sbjct: 348 GTLTPKSLLVRNYVVQYLLRLKDYEVTSALSKHLDGNYVQLSYDKYGSHVVQKCLESREF 407
Query: 503 HQKSQLVLELDGHVMRCVRDQNGNHVIQ 530
+ +++ EL + + D G++VIQ
Sbjct: 408 SSR-RIIAELLSDIDSLLVDPYGDYVIQ 434
>CGD|CAL0000283 [details] [associations]
symbol:orf19.4262 species:5476 "Candida albicans" [GO:0032473
"external side of mitochondrial outer membrane" evidence=IEA]
[GO:0034629 "cellular protein complex localization" evidence=IEA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0051654
"establishment of mitochondrion localization" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0000283 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 EMBL:AACQ01000021
EMBL:AACQ01000022 eggNOG:COG5099 RefSeq:XP_720570.1
RefSeq:XP_720698.1 ProteinModelPortal:Q5AGB7 GeneID:3637600
GeneID:3637766 KEGG:cal:CaO19.11738 KEGG:cal:CaO19.4262
Uniprot:Q5AGB7
Length = 492
Score = 124 (48.7 bits), Expect = 0.00018, P = 0.00018
Identities = 45/183 (24%), Positives = 85/183 (46%)
Query: 391 LKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAE--EKVSVFKEVLPHASKLM 448
++SS + + ++A + + + ++G+ IQ+ + C ++ + + + P+A KL
Sbjct: 37 VESSLVKLMMVKEVAPYLTQLGIHKNGTWAIQKIINLCHSDYQQMYLIGASLKPYAVKLF 96
Query: 449 TDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKS-- 506
D FGNYVIQ + GSP + E ++ L +S+ +G R I+ LE H S
Sbjct: 97 NDQFGNYVIQGCIKFGSPFN-DFVFEAMLDNFLEISVGRFGARCIRTILE--SCHDSSST 153
Query: 507 -----QLVLELDGHVMRCVRD----QNGNHVIQKCIECVPA--EKIEFIISAFRGQVATL 555
+ VL + G ++ + NG+ +I ++ KIE ++S F + L
Sbjct: 154 SPVTNEQVLLVAGLIIEFANELAVNSNGSLLITWYLDTFKDCDSKIELLMSKFLPNIRAL 213
Query: 556 STH 558
H
Sbjct: 214 CVH 216
>TAIR|locus:2144010 [details] [associations]
symbol:PUM19 "pumilio 19" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB026632
eggNOG:COG5099 HOGENOM:HOG000152208 IPI:IPI00541936
RefSeq:NP_200826.1 UniGene:At.66750 ProteinModelPortal:Q9LSS8
SMR:Q9LSS8 EnsemblPlants:AT5G60180.1 GeneID:836140
KEGG:ath:AT5G60180 TAIR:At5g60180 InParanoid:Q9LSS8 OMA:NPTETSG
PhylomeDB:Q9LSS8 Genevestigator:Q9LSS8 Uniprot:Q9LSS8
Length = 327
Score = 119 (46.9 bits), Expect = 0.00033, P = 0.00033
Identities = 37/130 (28%), Positives = 63/130 (48%)
Query: 409 VEFSVDQHGSRFIQQKLEHCSAEE-KVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPD 467
++ + DQHG + + + + + V+ +A +L D GN+V+Q
Sbjct: 156 LDLACDQHGCIALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSR 215
Query: 468 QRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL---DG-HVMRCVRDQ 523
+A L GQ + LS + YG +++K LEV E +V+EL DG +MR R++
Sbjct: 216 CIHNIAVNLYGQCIELSFKKYGSYIVEKLLEVEE--SMVVVVVELLGCDGDRLMRLARNE 273
Query: 524 NGNHVIQKCI 533
GN V+ K +
Sbjct: 274 FGNFVVVKAL 283
>TAIR|locus:2164165 [details] [associations]
symbol:PUM18 "pumilio 18" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0007059 "chromosome segregation"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0007131
"reciprocal meiotic recombination" evidence=RCA] [GO:0042138
"meiotic DNA double-strand break formation" evidence=RCA]
InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB019231
eggNOG:COG5099 HOGENOM:HOG000152208 EMBL:DQ056729 IPI:IPI00533181
RefSeq:NP_200819.1 UniGene:At.55636 ProteinModelPortal:Q9LVG3
SMR:Q9LVG3 EnsemblPlants:AT5G60110.1 GeneID:836133
KEGG:ath:AT5G60110 TAIR:At5g60110 InParanoid:Q9LVG3 OMA:EMISNSD
PhylomeDB:Q9LVG3 ProtClustDB:CLSN2916299 Genevestigator:Q9LVG3
Uniprot:Q9LVG3
Length = 327
Score = 118 (46.6 bits), Expect = 0.00042, P = 0.00042
Identities = 37/139 (26%), Positives = 65/139 (46%)
Query: 409 VEFSVDQHGSRFIQQKLEHCSAEE-KVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPD 467
++ + DQHG + + + + + V +A +L D GN+V+Q
Sbjct: 156 LDLACDQHGCIALNDIITDADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYDSR 215
Query: 468 QRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL---DG-HVMRCVRDQ 523
+A L GQ + LS + YG +++K LEV E +V+EL DG +MR R++
Sbjct: 216 CIHNIAVNLYGQCIELSFKKYGSYIVEKLLEVEE--SMVVVVVELLGCDGDRLMRLARNE 273
Query: 524 NGNHVIQKCIECVPAEKIE 542
GN V+ K + +++
Sbjct: 274 FGNFVVVKALRFTKMSRMD 292
>DICTYBASE|DDB_G0288551 [details] [associations]
symbol:DDB_G0288551 "pumilio RNA-binding
region-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
dictyBase:DDB_G0288551 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099 KO:K14844
EMBL:AAFI02000116 RefSeq:XP_636672.1 ProteinModelPortal:Q54IS5
STRING:Q54IS5 EnsemblProtists:DDB0238675 GeneID:8626685
KEGG:ddi:DDB_G0288551 OMA:LLRNDHI ProtClustDB:CLSZ2429870
Uniprot:Q54IS5
Length = 679
Score = 120 (47.3 bits), Expect = 0.00080, P = 0.00080
Identities = 38/185 (20%), Positives = 86/185 (46%)
Query: 388 LEELKSSNAQKFELSD-----IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLP 442
++E+K S+ ++ L + + G ++ V SR +Q L++ + ++ VFKE+
Sbjct: 120 IKEIKLSSEERATLIEQLTQKLKGNVLNVIVKHDASRVVQTLLKYGNEAQREIVFKELKD 179
Query: 443 HASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL-EVIE 501
+ +G ++I K ++G+ +QR + ++ G+ + + V++ E+
Sbjct: 180 QELTISKTQYGRFLILKLLKYGTEEQRNTIIKQFYGKFVSMISHKESSSVVEYIFSEIAS 239
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
QK+ ++ E G R + + + +E P +K E II+ Q+ + + G
Sbjct: 240 KLQKTHIIEEFYGPEYRLFKTEQPR-TLDSIVESSPQKK-EPIITYLSSQLTKILSSK-G 296
Query: 562 CRVIQ 566
R++Q
Sbjct: 297 ERLVQ 301
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 575 526 0.00091 119 3 11 22 0.43 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 83
No. of states in DFA: 609 (65 KB)
Total size of DFA: 287 KB (2148 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 47.69u 0.10s 47.79t Elapsed: 00:00:02
Total cpu time: 47.71u 0.10s 47.81t Elapsed: 00:00:02
Start: Tue May 21 09:14:23 2013 End: Tue May 21 09:14:25 2013