BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008180
(575 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 PE=1 SV=2
Length = 961
Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust.
Identities = 272/556 (48%), Positives = 338/556 (60%), Gaps = 86/556 (15%)
Query: 54 NPRIDDTNSKNAGLEDVASVSAASQSDVSRAESRMRKKQEEQKYQGRIMMQQY-PSAQQG 112
N + + N++ A ED ++S S S SRMR+ QE+Q+ QGR M QY PS+
Sbjct: 279 NAQTERLNARQASHED-NNLSVFGASPPSSVASRMRRNQEDQQSQGRRMPPQYTPSS--- 334
Query: 113 FQYQVQGVQGQAVS----------------LGMNNAHNA----------------GTYMP 140
YQVQ Q +S + H+ YM
Sbjct: 335 --YQVQASSPQQMSYPRIGGTQDMMQSLPKIATGEVHSTFQSPHGLAPPPMYTSTAAYMT 392
Query: 141 SGNPFY-PSFQPSGAGVYPSQYNVGGYALNSALFPPFVAGYPS-QGPVPMPFDATSGSS- 197
S +PFY +FQ SG ++ QYN GGY S + P +++GYPS + VPMP+D +S SS
Sbjct: 393 SLSPFYHQNFQSSG--MFVPQYNYGGYPPASGIVPQYMSGYPSHEATVPMPYDISSTSSG 450
Query: 198 FN---IRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFGDAYNAS 254
+N + S+G+ IP + VDP +QYFQ DAY
Sbjct: 451 YNNPRLLPGVSSSGQNIPSL--------------------VDPFQLQYFQQAQVDAYAPP 490
Query: 255 VQHRLASSGVNGALADPSSKKEPIVAAYMGDQN-LQSSLNGGPSISNPRKVGMPVGGYYG 313
Q S G +K+ YM + L S L+ G + +PR +G Y+
Sbjct: 491 FQSSTDSFG----------QKDQQAVGYMANHEPLNSPLSPGYGLQSPRHMG----NYFA 536
Query: 314 GLPGMGVMGQFPTSPIASPVLPSSPVGST-SQLGLRHEMRL-PQGLNRNTGIY-SGWQGQ 370
PG+ VM Q+P SP+ASPV+PSSPVG S G R E R QG +RNTGIY GWQG
Sbjct: 537 VPPGVRVMPQYPGSPLASPVMPSSPVGGMMSHFGRRSETRYHQQGPSRNTGIYPGGWQGN 596
Query: 371 RTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSA 430
R +D K+HSFL+ELKS NA+K ELSDIAGR+VEFSVDQHGSRFIQQKLEHCS
Sbjct: 597 RG-GASSIVDDLKRHSFLDELKSPNARKLELSDIAGRVVEFSVDQHGSRFIQQKLEHCSD 655
Query: 431 EEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGC 490
EEK SVF EVLP ASKLMTDVFGNYVIQKF EHG+P QR+EL ++L GQ++ LSLQMYGC
Sbjct: 656 EEKASVFSEVLPQASKLMTDVFGNYVIQKFIEHGTPAQREELVKQLAGQMVSLSLQMYGC 715
Query: 491 RVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRG 550
RVIQKALEVI++ QK++L+ ELDG+V++CVRDQNGNHVIQKCIE +PA +I F+I+AFRG
Sbjct: 716 RVIQKALEVIDVDQKTELIRELDGNVLKCVRDQNGNHVIQKCIESMPAGRIGFVIAAFRG 775
Query: 551 QVATLSTHPYGCRVIQ 566
QVATLSTHPYGCRVIQ
Sbjct: 776 QVATLSTHPYGCRVIQ 791
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 95/174 (54%), Gaps = 7/174 (4%)
Query: 399 FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV-SVFKEVLPHASKLMTDVFGNYVI 457
F ++ G++ S +G R IQ+ LEHCS +E+ + E+L A L D +GNYV
Sbjct: 768 FVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDEILESAFALAHDQYGNYVT 827
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----- 512
Q E G PD+R+++ EKL G V+ +S Y V++K LE + ++ L+ E+
Sbjct: 828 QHVLERGKPDERRQIIEKLTGNVVQMSQHKYASNVVEKCLEHADSTEREFLIEEIMGKSE 887
Query: 513 -DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
D H++ ++DQ N+V+QK +E ++ E ++ + + +L + YG ++
Sbjct: 888 EDNHLLAMMKDQFANYVVQKVLEISKDQQREILVQRMKIHLQSLRKYTYGKHIV 941
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 401 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL------PHASKLMTDVFGN 454
+ + G +V+ S ++ S +++ LEH + E+ + +E++ H +M D F N
Sbjct: 843 IEKLTGNVVQMSQHKYASNVVEKCLEHADSTEREFLIEEIMGKSEEDNHLLAMMKDQFAN 902
Query: 455 YVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQK 495
YV+QK E QR+ L +++ + L YG ++ +
Sbjct: 903 YVVQKVLEISKDQQREILVQRMKIHLQSLRKYTYGKHIVAR 943
>sp|Q9C5E7|PUM6_ARATH Pumilio homolog 6, chloroplastic OS=Arabidopsis thaliana GN=APUM6
PE=1 SV=1
Length = 861
Score = 335 bits (859), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 199/413 (48%), Positives = 247/413 (59%), Gaps = 54/413 (13%)
Query: 155 GVYPSQYNVGGYALNSALFPPFVAGYPSQGPVPMPFDATSGSSFNIRTTSVSTGEGIPHI 214
VY QY G Y + + P F+ GYPS G VP+ F + + S G + H
Sbjct: 336 AVYSPQYGYGPY---TNMIPQFMPGYPSHGSVPV----VVSPDFIPQLSGPSAG-SVVHG 387
Query: 215 GSTQH-QKFYGHQGLMLQSPFVDPLHMQYFQHPFGDAYNASVQHRLASSGVNGALADPSS 273
G Q+ +K Y G Q F DP++MQY Q FG + + N A S
Sbjct: 388 GEMQYAEKLYVPPG---QPSFPDPMYMQYCQQSFGQMEPLAPR--------NHTNAPESQ 436
Query: 274 KKEPIVAAYMGDQNLQSSLNGGPSISNPRKVGMPVGGYYGGLPGMGVMGQFPTSPIASPV 333
K +P + GPS SN + GM V YYG P MG+M Q+ + + P+
Sbjct: 437 KDDPKFLRQIR----------GPSNSNMARPGMGVN-YYGIQPNMGIMVQYLPTHLGPPL 485
Query: 334 LPSSPVGSTSQLGLRHEMRLPQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSFLEELKS 393
P G Y GWQ Q + EG + +FLEELKS
Sbjct: 486 SP--------------------GHVPYVEAYPGWQPQGSLEGA---NGPRLCNFLEELKS 522
Query: 394 SNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFG 453
++F+LSDI G IVEFS DQHGSRFIQQKLE+C EEK +VF+E+LPHA KLMTDVFG
Sbjct: 523 GKGRRFDLSDITGHIVEFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFG 582
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
NYVIQKFFE+G+ QRKELA++L+GQ++PLSLQMYGCRVIQKAL+VIE Q+ +L ELD
Sbjct: 583 NYVIQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRVRLARELD 642
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
G VMRCVRDQNGNHVIQKCIE +PA+K+ F++ AFRGQV++LS HPYGCRVIQ
Sbjct: 643 GQVMRCVRDQNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQ 695
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 89/174 (51%), Gaps = 7/174 (4%)
Query: 399 FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVS-VFKEVLPHASKLMTDVFGNYVI 457
F L G++ S+ +G R IQ+ LE CS + + + +E+L L D +GNYV
Sbjct: 672 FMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDHQCRFITEEILESVCVLSKDQYGNYVT 731
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDG--- 514
Q E G+ ++R+ + KL G ++ LSL + VI+K LE ++ ++ E+ G
Sbjct: 732 QHVLEKGTSEERERIGRKLSGHIVQLSLHKFASNVIEKCLEYGGRVERDLIIKEIAGPDE 791
Query: 515 ---HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
++ ++DQ GN+V+QK E A++ + S R + L + YG ++
Sbjct: 792 SYNSLLMMMKDQYGNYVVQKIFETCTADQRLTLFSRVRMHASALKKYTYGKHIV 845
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 6/151 (3%)
Query: 387 FLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASK 446
LE + +F +I + S DQ+G+ Q LE ++EE+ + +++ H +
Sbjct: 697 LLERCSHDHQCRFITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQ 756
Query: 447 LMTDVFGNYVIQKFFEHGSPDQRKELAEKLVG------QVLPLSLQMYGCRVIQKALEVI 500
L F + VI+K E+G +R + +++ G +L + YG V+QK E
Sbjct: 757 LSLHKFASNVIEKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETC 816
Query: 501 ELHQKSQLVLELDGHVMRCVRDQNGNHVIQK 531
Q+ L + H + G H++ +
Sbjct: 817 TADQRLTLFSRVRMHASALKKYTYGKHIVSR 847
>sp|Q9ZW02|PUM3_ARATH Pumilio homolog 3 OS=Arabidopsis thaliana GN=APUM3 PE=1 SV=1
Length = 964
Score = 313 bits (802), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 197/453 (43%), Positives = 251/453 (55%), Gaps = 35/453 (7%)
Query: 116 QVQGVQGQAVSLGMNNAHNAGTYMPSGNPFYPSFQPSGAGVYPSQYNVGGYALNSALFPP 175
Q++G QG A + G + A Y +P Y + P+ A + +Q Y+ P
Sbjct: 370 QMRGSQGSAYNSG---SGVANPYQHHDSPNYYALNPAVASMMANQLGTNNYS------PM 420
Query: 176 FVAGYPSQGPVPMPFDATSGSSFNIRTTSVSTGEGIPHIGSTQHQKFYGHQGLMLQSPFV 235
+ + G M G SF ++S I +G+ + GH S
Sbjct: 421 YENASATLGYSAMD-SRLHGGSFVSSGQNLSESRNIGRVGNRMMEGGTGHP-----SHLA 474
Query: 236 DPLHMQYFQHPFGDAYNASVQHRLASSGVNGALADPSSKKEPIVAAYMGDQNLQSSLNGG 295
DP++ QY + + NA L ++ + I AY+G Q Q L
Sbjct: 475 DPMYHQYARF----SENADSFDLLNDPSMDRNYGNSYMNMLEIQRAYLGSQKSQYGL--- 527
Query: 296 PSISNPRKVGMPVGGYYGGLPGMGVMGQFPTSPIASPVLPSSPVGSTSQLGLRHE--MRL 353
P K G P Y G P G +P SP+A +P+S + S + R E MR
Sbjct: 528 -----PYKSGSPNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSLMSPYSPM-RRGEVNMRY 581
Query: 354 PQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSV 413
P TG G ++ + ++ S LEE KS+ + FELS+IAG +VEFS
Sbjct: 582 PAATRNYTGGVMG-----SWHMDASLDEGFGSSMLEEFKSNKTRGFELSEIAGHVVEFSS 636
Query: 414 DQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELA 473
DQ+GSRFIQQKLE + +EK V++E++P A LMTDVFGNYVIQKFFEHG P QR+EL
Sbjct: 637 DQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGNYVIQKFFEHGLPPQRRELG 696
Query: 474 EKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCI 533
EKL+ VLPLSLQMYGCRVIQKA+EV++L QK Q+V ELDGHVMRCVRDQNGNHV+QKCI
Sbjct: 697 EKLIDNVLPLSLQMYGCRVIQKAIEVVDLDQKIQMVKELDGHVMRCVRDQNGNHVVQKCI 756
Query: 534 ECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
ECVP E IEFIIS F G V TLSTHPYGCRVIQ
Sbjct: 757 ECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQ 789
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 94/175 (53%), Gaps = 7/175 (4%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHC-SAEEKVSVFKEVLPHASKLMTDVFGNYV 456
+F +S G +V S +G R IQ+ LEHC + + + V +E+L S L D +GNYV
Sbjct: 765 EFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQSKVMEEILSTVSMLTQDQYGNYV 824
Query: 457 IQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH- 515
+Q EHG PD+R + ++L G+++ +S Q + V++K L ++ LV E+ G
Sbjct: 825 VQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTT 884
Query: 516 -----VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
+ ++DQ N+V+QK +E ++ E I++ + + L + YG ++
Sbjct: 885 DENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHLNALKKYTYGKHIV 939
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 108/232 (46%), Gaps = 23/232 (9%)
Query: 339 VGSTSQLGLRHEMRLPQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQK 398
+T + + +E +P+ L T ++ + Q+ FE H Q+
Sbjct: 650 TATTDEKNMVYEEIMPKALALMTDVFGNYVIQKFFE----------HGL-------PPQR 692
Query: 399 FELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
EL + + ++ S+ +G R IQ+ +E ++K+ + KE+ H + + D GN+V+
Sbjct: 693 RELGEKLIDNVLPLSLQMYGCRVIQKAIEVVDLDQKIQMVKELDGHVMRCVRDQNGNHVV 752
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQ---KSQLVLELDG 514
QK E + + + G V+ LS YGCRVIQ+ LE H +S+++ E+
Sbjct: 753 QKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLE--HCHNPDTQSKVMEEILS 810
Query: 515 HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
V +DQ GN+V+Q +E ++ II G++ +S + V++
Sbjct: 811 TVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVE 862
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 73/157 (46%), Gaps = 6/157 (3%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
LE + + Q + +I + + DQ+G+ +Q LEH +E+ + KE+ ++
Sbjct: 792 LEHCHNPDTQSKVMEEILSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQM 851
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQV---LPLSLQM---YGCRVIQKALEVIE 501
F + V++K G P++R+ L +++G PL M + V+QK LE +
Sbjct: 852 SQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCD 911
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPA 538
Q+ ++ + H+ + G H++ + + V A
Sbjct: 912 DQQRELILTRIKVHLNALKKYTYGKHIVARVEKLVAA 948
>sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=1 SV=1
Length = 968
Score = 311 bits (796), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 193/421 (45%), Positives = 244/421 (57%), Gaps = 44/421 (10%)
Query: 161 YNVGGYALNSALFPPFVAGYPSQGPVPMPFDATSGSSFNIRTTS------VSTGEGIP-- 212
Y + YALN A+ + PM +D S F+ + VS+G+ +
Sbjct: 402 YCLNNYALNPAVASMMANQLGNNNFAPM-YDNVSALGFSGMDSRHHGRGFVSSGQNLSES 460
Query: 213 -HIGSTQHQKFYGHQGLMLQSPFVDPLHMQYFQHPFGDAYNASVQHRLASSGVNGALADP 271
++G ++ G GL QS VDP++ QY D+ + L DP
Sbjct: 461 RNLGRFSNRMMGGGAGL--QSHMVDPMYNQY-----ADSLDL--------------LNDP 499
Query: 272 SSKKEPIV-AAYMGDQNLQSSLNGG--PSISNPRKVGMPVGGYYGGLPGMGVMGQFPTSP 328
S + + ++YM LQ + G P K G P Y G P G +P SP
Sbjct: 500 SMDRNFMGGSSYMDMLELQRAYLGAQKSQYGVPYKSGSPNSHSYYGSPTFGSNMSYPGSP 559
Query: 329 IASPVLPSSPVGSTSQLGLRHE--MRLPQGL-NRNTGIYSGWQGQRTFEGQRTFEDSKKH 385
+A +P+S + S + R E MR P N + G+ W +F+ +
Sbjct: 560 LAHHGMPNSLMSPYSPM-RRDEVNMRFPSATRNYSGGLMGSWHMDASFD------EGFGS 612
Query: 386 SFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHAS 445
S LEE KS+ + FELS+IAG +VEFS DQ+GSRFIQQKLE + +EK V++E++P A
Sbjct: 613 SMLEEFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQAL 672
Query: 446 KLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQK 505
LMTDVFGNYVIQKFFEHG P QR+ELAEKL VLPLSLQMYGCRVIQKA+EV++L QK
Sbjct: 673 VLMTDVFGNYVIQKFFEHGLPPQRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQK 732
Query: 506 SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
++V ELDGHVMRCVRDQNGNHV+QKCIECVP E IEFIIS F G V TLSTHPYGCRVI
Sbjct: 733 IKMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVI 792
Query: 566 Q 566
Q
Sbjct: 793 Q 793
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 93/175 (53%), Gaps = 7/175 (4%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHC-SAEEKVSVFKEVLPHASKLMTDVFGNYV 456
+F +S G +V S +G R IQ+ LEHC + + V +E+L S L D +GNYV
Sbjct: 769 EFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMEEILSTVSMLAQDQYGNYV 828
Query: 457 IQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH- 515
+Q EHG PD+R + ++L G+++ +S Q + V++K L ++ LV E+ G
Sbjct: 829 VQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTT 888
Query: 516 -----VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
+ ++DQ N+V+QK +E ++ E I++ + + L + YG V+
Sbjct: 889 DENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHLTALKKYTYGKHVV 943
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 6/157 (3%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
LE + Q + +I + + DQ+G+ +Q LEH +E+ + KE+ ++
Sbjct: 796 LEHCHDPDTQSKVMEEILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQM 855
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQV---LPLSLQM---YGCRVIQKALEVIE 501
F + V++K G P++R+ L +++G PL M + V+QK LE +
Sbjct: 856 SQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCD 915
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPA 538
Q+ ++ + H+ + G HV+ + + V A
Sbjct: 916 DQQRELILTRIKVHLTALKKYTYGKHVVARIEKLVAA 952
>sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1
Length = 972
Score = 306 bits (783), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 175/345 (50%), Positives = 212/345 (61%), Gaps = 34/345 (9%)
Query: 227 GLMLQSPFVDPLHMQYFQHPFGDAYNASVQHRLASSGVNGALADPSSKKEPIVAAYMGDQ 286
G LQS DP++ QY D+ + L DPS + +YM
Sbjct: 482 GTGLQSHMADPMYHQY-----ADSLDL--------------LNDPSMDVNFMGNSYMNML 522
Query: 287 NLQSSLNGG--PSISNPRKVGMPVGGYYGGLPGMGVMGQFPTSPIASPVLPSSPVGSTSQ 344
LQ + G P K G P G P G +P SP+A +LP+S V S
Sbjct: 523 ELQRAYLGAQKSQYGVPYKSGSPNSHTDYGSP---TFGSYPGSPLAHHLLPNSLVSPCSP 579
Query: 345 LGLRHE--MRLPQGL-NRNTGIYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFEL 401
+ R E MR P N G+ W + + + S LEE KS+ + FEL
Sbjct: 580 M-RRGEVNMRYPSATRNYAGGVMGSWHMDASLD------EGFGSSMLEEFKSNKTRGFEL 632
Query: 402 SDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFF 461
++IAG +VEFS DQ+GSRFIQQKLE +++EK V++E++PHA LMTDVFGNYVIQKFF
Sbjct: 633 AEIAGHVVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGNYVIQKFF 692
Query: 462 EHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVR 521
EHG P QR+ELA+KL VLPLSLQMYGCRVIQKA+EV++L QK ++V ELDGHVMRCVR
Sbjct: 693 EHGLPPQRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVR 752
Query: 522 DQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
DQNGNHV+QKCIECVP E IEFIIS F G V TLSTHPYGCRVIQ
Sbjct: 753 DQNGNHVVQKCIECVPEENIEFIISTFFGNVVTLSTHPYGCRVIQ 797
Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 7/175 (4%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHC-SAEEKVSVFKEVLPHASKLMTDVFGNYV 456
+F +S G +V S +G R IQ+ LEHC + + V E++ S L D +GNYV
Sbjct: 773 EFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMDEIMSTISMLAQDQYGNYV 832
Query: 457 IQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH- 515
IQ EHG PD+R + ++L G+++ +S Q + V++K L ++ LV E+ G
Sbjct: 833 IQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEEREFLVNEMLGTT 892
Query: 516 -----VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
+ ++DQ N+V+QK +E ++ E I+ + + L + YG ++
Sbjct: 893 DENEPLQAMMKDQFANYVVQKVLETCDDQQRELILGRIKVHLNALKKYTYGKHIV 947
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 90/172 (52%), Gaps = 2/172 (1%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
Q+ EL+D + ++ S+ +G R IQ+ +E ++K+ + KE+ H + + D GN+
Sbjct: 699 QRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNH 758
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALE-VIELHQKSQLVLELDG 514
V+QK E + + + G V+ LS YGCRVIQ+ LE + +S+++ E+
Sbjct: 759 VVQKCIECVPEENIEFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMDEIMS 818
Query: 515 HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ +DQ GN+VIQ +E ++ II G++ +S + V++
Sbjct: 819 TISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVE 870
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 6/157 (3%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
LE + Q + +I I + DQ+G+ IQ LEH +E+ + KE+ ++
Sbjct: 800 LEHCHDPDTQSKVMDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQM 859
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQV---LPLSLQM---YGCRVIQKALEVIE 501
F + V++K G P++R+ L +++G PL M + V+QK LE +
Sbjct: 860 SQQKFASNVVEKCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCD 919
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPA 538
Q+ ++ + H+ + G H++ + + V A
Sbjct: 920 DQQRELILGRIKVHLNALKKYTYGKHIVARVEKLVAA 956
>sp|Q9SS47|PUM4_ARATH Pumilio homolog 4 OS=Arabidopsis thaliana GN=APUM4 PE=1 SV=2
Length = 1003
Score = 268 bits (686), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 130/216 (60%), Positives = 161/216 (74%), Gaps = 4/216 (1%)
Query: 351 MRLPQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVE 410
MR+ Q + + G QG + T E S LE K++ + ELS+I G ++E
Sbjct: 616 MRMSQSASMMKVPFGGLQGSSHVDIGSTAE----ASLLEGFKNNKTRSLELSEIVGHVIE 671
Query: 411 FSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRK 470
FS+DQ+GSRFIQQKLE + EEK ++F E+LP+ LMTDVFGNYVIQKFFEHG+ QRK
Sbjct: 672 FSMDQYGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKFFEHGTTKQRK 731
Query: 471 ELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQ 530
ELAE++ G VL LSLQMYGCRVIQKALEV+EL Q++++V ELDG VM+CV DQNGNHVIQ
Sbjct: 732 ELAEQVTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNHVIQ 791
Query: 531 KCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
KCIE +P + I+FIIS+F G+V LSTHPYGCRVIQ
Sbjct: 792 KCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQ 827
Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 7/175 (4%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCS-AEEKVSVFKEVLPHASKLMTDVFGNYV 456
+F +S G+++ S +G R IQ+ LEH E + + +E++ L D +GNYV
Sbjct: 803 QFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDSVCTLAQDQYGNYV 862
Query: 457 IQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH- 515
IQ +HG P +R E+ KL GQ++ +S Q + V++K L ++ LV E+ G+
Sbjct: 863 IQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNVVEKCLTFGGPEERQVLVNEMLGYT 922
Query: 516 -----VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
+ ++D GN+V+QK +E + + I+S + + L + YG ++
Sbjct: 923 DENEPLQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLNALKRYTYGKHIV 977
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 106/217 (48%), Gaps = 21/217 (9%)
Query: 353 LPQGLNRNTGIYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSD-IAGRIVEF 411
LP G T ++ + Q+ FE + Q+ EL++ + G ++
Sbjct: 702 LPYGRTLMTDVFGNYVIQKFFE-----------------HGTTKQRKELAEQVTGHVLAL 744
Query: 412 SVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKE 471
S+ +G R IQ+ LE E++ + KE+ K + D GN+VIQK E D +
Sbjct: 745 SLQMYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNHVIQKCIERLPQDWIQF 804
Query: 472 LAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVL-ELDGHVMRCVRDQNGNHVIQ 530
+ G+VL LS YGCRVIQ+ LE I+ + ++++ E+ V +DQ GN+VIQ
Sbjct: 805 IISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDSVCTLAQDQYGNYVIQ 864
Query: 531 KCIE-CVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
I+ P E+ E II+ GQ+ +S + V++
Sbjct: 865 HIIQHGKPHERSE-IINKLAGQIVKMSQQKFASNVVE 900
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 71/155 (45%), Gaps = 6/155 (3%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
LE + Q+ + +I + + DQ+G+ IQ ++H E+ + ++ K+
Sbjct: 830 LEHIDDIETQRIIMEEIMDSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKM 889
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVG---QVLPLSLQM---YGCRVIQKALEVIE 501
F + V++K G P++R+ L +++G + PL M +G V+QK LE +
Sbjct: 890 SQQKFASNVVEKCLTFGGPEERQVLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVLETCD 949
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECV 536
+ ++ + H+ R G H++ + + +
Sbjct: 950 DQSLALILSRIKVHLNALKRYTYGKHIVARVEKLI 984
>sp|P25822|PUM_DROME Maternal protein pumilio OS=Drosophila melanogaster GN=pum PE=1 SV=2
Length = 1533
Score = 248 bits (633), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 114/183 (62%), Positives = 140/183 (76%)
Query: 384 KHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPH 443
+ LE+ ++ +L D+A IVEFS DQHGSRFIQQKLE +A EK VF E+L
Sbjct: 1092 RSRLLEDFRNQRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAA 1151
Query: 444 ASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELH 503
A LMTDVFGNYVIQKFFE G+P+Q+ L ++ G VL L+LQMYGCRVIQKALE I
Sbjct: 1152 AYSLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPE 1211
Query: 504 QKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCR 563
Q+ ++V ELDGHV++CV+DQNGNHV+QKCIECV ++FII+AF+GQV +LSTHPYGCR
Sbjct: 1212 QQQEIVHELDGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCR 1271
Query: 564 VIQ 566
VIQ
Sbjct: 1272 VIQ 1274
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 92/173 (53%), Gaps = 4/173 (2%)
Query: 396 AQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
A +F ++ G++ S +G R IQ+ LEHC+AE+ + E+ H +L+ D +GNY
Sbjct: 1248 ALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDELHEHTEQLIQDQYGNY 1307
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL--- 512
VIQ EHG + + L + G+VL LS + V++K + +++ L+ E+
Sbjct: 1308 VIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVEKCVTHATRGERTGLIDEVCTF 1367
Query: 513 -DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRV 564
D + ++DQ N+V+QK I+ +++ +++ R +A L + YG +
Sbjct: 1368 NDNALHVMMKDQYANYVVQKMIDVSEPTQLKKLMTKIRPHMAALRKYTYGKHI 1420
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 401 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASK----LMTDVFGNYV 456
++ + G+++ S + S +++ + H + E+ + EV +M D + NYV
Sbjct: 1325 INSVRGKVLVLSQHKFASNVVEKCVTHATRGERTGLIDEVCTFNDNALHVMMKDQYANYV 1384
Query: 457 IQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQK 495
+QK + P Q K+L K+ + L YG + K
Sbjct: 1385 VQKMIDVSEPTQLKKLMTKIRPHMAALRKYTYGKHINAK 1423
>sp|Q80U58|PUM2_MOUSE Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=2
Length = 1066
Score = 247 bits (630), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 117/187 (62%), Positives = 143/187 (76%), Gaps = 2/187 (1%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 705 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEIL 764
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 765 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 824
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 825 SDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHP 884
Query: 560 YGCRVIQ 566
YGCRVIQ
Sbjct: 885 YGCRVIQ 891
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 93/173 (53%), Gaps = 3/173 (1%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L+ I G ++ ++ +G R IQ+ LE S++++V + KE+ H K + D G
Sbjct: 791 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNG 850
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 851 NHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELH 910
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
H + V+DQ GN+VIQ +E E I+S RG+V LS H + V++
Sbjct: 911 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVE 963
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 95/175 (54%), Gaps = 7/175 (4%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC+AE+ + + +E+ H +L+ D +GNYVI
Sbjct: 867 QFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVI 926
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G+VL LS + V++K + +++ L+ E+ D
Sbjct: 927 QHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQND 986
Query: 514 G---HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G + ++DQ N+V+QK I+ + + I+ R + TL + YG ++
Sbjct: 987 GPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHIL 1041
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 401 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-----PHAS--KLMTDVFG 453
+S+I G+++ S + S +++ + H S E+ + EV PH++ +M D +
Sbjct: 942 VSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYA 1001
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQK 495
NYV+QK + P QRK + K+ + L YG ++ K
Sbjct: 1002 NYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAK 1043
>sp|Q8TB72|PUM2_HUMAN Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=2
Length = 1066
Score = 247 bits (630), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 117/187 (62%), Positives = 143/187 (76%), Gaps = 2/187 (1%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L D+ G IVEFS DQHGSRFIQQKLE + E+ VF E+L
Sbjct: 705 SGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIL 764
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LMTDVFGNYVIQKFFE GS DQ+ LA ++ G VLPL+LQMYGCRVIQKALE I
Sbjct: 765 QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESIS 824
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ S++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 825 SDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHP 884
Query: 560 YGCRVIQ 566
YGCRVIQ
Sbjct: 885 YGCRVIQ 891
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 93/173 (53%), Gaps = 3/173 (1%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L+ I G ++ ++ +G R IQ+ LE S++++V + KE+ H K + D G
Sbjct: 791 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNG 850
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 851 NHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELH 910
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
H + V+DQ GN+VIQ +E E I+S RG+V LS H + V++
Sbjct: 911 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVE 963
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 95/175 (54%), Gaps = 7/175 (4%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC+AE+ + + +E+ H +L+ D +GNYVI
Sbjct: 867 QFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVI 926
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G+VL LS + V++K + +++ L+ E+ D
Sbjct: 927 QHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQND 986
Query: 514 G---HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G + ++DQ N+V+QK I+ + + I+ R + TL + YG ++
Sbjct: 987 GPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHIL 1041
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 401 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-----PHAS--KLMTDVFG 453
+S+I G+++ S + S +++ + H S E+ + EV PH++ +M D +
Sbjct: 942 VSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYA 1001
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQK 495
NYV+QK + P QRK + K+ + L YG ++ K
Sbjct: 1002 NYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAK 1043
>sp|Q14671|PUM1_HUMAN Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3
Length = 1186
Score = 243 bits (620), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 113/185 (61%), Positives = 142/185 (76%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 827 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 886
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 887 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 946
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 947 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 1006
Query: 562 CRVIQ 566
CRVIQ
Sbjct: 1007 CRVIQ 1011
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 1/171 (0%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L++ I G ++ ++ +G R IQ+ LE ++++ + +E+ H K + D GN+
Sbjct: 913 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNH 972
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 973 VVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQH 1032
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ V+DQ GN+VIQ +E E I++ RG V LS H + V++
Sbjct: 1033 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1083
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 93/175 (53%), Gaps = 7/175 (4%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC ++ + + +E+ H +L+ D +GNYVI
Sbjct: 987 QFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVI 1046
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G VL LS + V++K + +++ L+ E+ D
Sbjct: 1047 QHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMND 1106
Query: 514 G---HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G + ++DQ N+V+QK I+ + + ++ R +ATL + YG ++
Sbjct: 1107 GPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 1161
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 401 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-----PHAS--KLMTDVFG 453
+++I G ++ S + S +++ + H S E+ + EV PH++ +M D +
Sbjct: 1062 VAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYA 1121
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQK 495
NYV+QK + P QRK + K+ + L YG ++ K
Sbjct: 1122 NYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAK 1163
>sp|Q5R5X3|PUM1_PONAB Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=1
Length = 1186
Score = 243 bits (620), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 113/185 (61%), Positives = 142/185 (76%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 827 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 886
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 887 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 946
Query: 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYG 561
Q++++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHPYG
Sbjct: 947 SDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 1006
Query: 562 CRVIQ 566
CRVIQ
Sbjct: 1007 CRVIQ 1011
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 1/171 (0%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK L++ I G ++ ++ +G R IQ+ LE ++++ + +E+ H K + D GN+
Sbjct: 913 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNH 972
Query: 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL H
Sbjct: 973 VVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQH 1032
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ V+DQ GN+VIQ +E E I++ RG V LS H + V++
Sbjct: 1033 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1083
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 93/175 (53%), Gaps = 7/175 (4%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC ++ + + +E+ H +L+ D +GNYVI
Sbjct: 987 QFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVI 1046
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G VL LS + V++K + +++ L+ E+ D
Sbjct: 1047 QHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMND 1106
Query: 514 G---HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G + ++DQ N+V+QK I+ + + ++ R +ATL + YG ++
Sbjct: 1107 GPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 1161
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-----P 442
LE + + K +++I G ++ S + S +++ + H S E+ + EV P
Sbjct: 1050 LEHGRPEDKSKI-VAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGP 1108
Query: 443 HAS--KLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQK 495
H++ +M D + NYV+QK + P QRK + K+ + L YG ++ K
Sbjct: 1109 HSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAK 1163
>sp|Q80U78|PUM1_MOUSE Pumilio homolog 1 OS=Mus musculus GN=Pum1 PE=1 SV=2
Length = 1189
Score = 240 bits (613), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 114/187 (60%), Positives = 143/187 (76%), Gaps = 2/187 (1%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE +A E+ VF E+L
Sbjct: 828 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEIL 887
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 888 QAAYQLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 947
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 948 SDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 1007
Query: 560 YGCRVIQ 566
YGCRVIQ
Sbjct: 1008 YGCRVIQ 1014
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 94/176 (53%), Gaps = 3/176 (1%)
Query: 394 SNAQKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTD 450
S+ QK L++ I G ++ ++ +G R IQ+ LE ++++V + +E+ H K + D
Sbjct: 911 SHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKD 970
Query: 451 VFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVL 510
GN+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++
Sbjct: 971 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILE 1030
Query: 511 ELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
EL H + V+DQ GN+VIQ +E E I++ RG V LS H + V++
Sbjct: 1031 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1086
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 93/175 (53%), Gaps = 7/175 (4%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC ++ + + +E+ H +L+ D +GNYVI
Sbjct: 990 QFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVI 1049
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G VL LS + V++K + +++ L+ E+ D
Sbjct: 1050 QHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMND 1109
Query: 514 G---HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G + ++DQ N+V+QK I+ + + ++ R +ATL + YG ++
Sbjct: 1110 GPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 1164
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-----P 442
LE + + K +++I G ++ S + S +++ + H S E+ + EV P
Sbjct: 1053 LEHGRPEDKSKI-VAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGP 1111
Query: 443 HAS--KLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQK 495
H++ +M D + NYV+QK + P QRK + K+ + L YG ++ K
Sbjct: 1112 HSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAK 1166
>sp|Q2VB19|PUM1_CHICK Pumilio homolog 1 OS=Gallus gallus GN=PUM1 PE=2 SV=1
Length = 1189
Score = 238 bits (607), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 113/187 (60%), Positives = 142/187 (75%), Gaps = 2/187 (1%)
Query: 382 SKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441
S + LE+ +++ +L +IAG I+EFS DQHGSRFIQ KLE + E+ VF E+L
Sbjct: 828 SGRSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEIL 887
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501
A +LM DVFGNYVIQKFFE GS +Q+ LAE++ G VL L+LQMYGCRVIQKALE I
Sbjct: 888 QAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIP 947
Query: 502 LHQK--SQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHP 559
Q+ +++V ELDGHV++CV+DQNGNHV+QKCIECV + ++FII AF+GQV LSTHP
Sbjct: 948 PDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHP 1007
Query: 560 YGCRVIQ 566
YGCRVIQ
Sbjct: 1008 YGCRVIQ 1014
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 93/175 (53%), Gaps = 7/175 (4%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F + G++ S +G R IQ+ LEHC E+ + + +E+ H +L+ D +GNYVI
Sbjct: 990 QFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTLPILEELHQHTEQLVQDQYGNYVI 1049
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL----D 513
Q EHG P+ + ++ ++ G VL LS + V++K + +++ L+ E+ D
Sbjct: 1050 QHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAMLIDEVCTMND 1109
Query: 514 G---HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
G + ++DQ N+V+QK I+ + + ++ R +ATL + YG ++
Sbjct: 1110 GPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKHIL 1164
Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 3/173 (1%)
Query: 397 QKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV--SVFKEVLPHASKLMTDVFG 453
QK L++ I G ++ ++ +G R IQ+ LE +++V + +E+ H K + D G
Sbjct: 914 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQVINEMVRELDGHVLKCVKDQNG 973
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
N+V+QK E P + + + GQV LS YGCRVIQ+ LE Q ++ EL
Sbjct: 974 NHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTLPILEELH 1033
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
H + V+DQ GN+VIQ +E E I++ RG V LS H + V++
Sbjct: 1034 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVE 1086
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 401 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-----PHAS--KLMTDVFG 453
+++I G ++ S + S +++ + H S E+ + EV PH++ +M D +
Sbjct: 1065 VAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAMLIDEVCTMNDGPHSALYTMMKDQYA 1124
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQK 495
NYV+QK + P QRK + K+ + L YG ++ K
Sbjct: 1125 NYVVQKMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKHILAK 1166
>sp|O94462|PUF3_SCHPO mRNA-binding protein puf3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=puf3 PE=2 SV=4
Length = 732
Score = 211 bits (536), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 101/178 (56%), Positives = 129/178 (72%), Gaps = 2/178 (1%)
Query: 391 LKSSNAQK-FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHAS-KLM 448
L +N Q+ FELSDI G +V FS DQHGSRFIQQKL + EE+ +VF+E+ + +LM
Sbjct: 383 LFHANKQRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLM 442
Query: 449 TDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQL 508
D+FGNYV+QK+FE G+ Q++ L ++ G V LSLQMYGCRV+QKA+E I + QL
Sbjct: 443 MDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQL 502
Query: 509 VLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ ELDGHV+ CV DQNGNHVIQK IEC+ ++FI+ A R Q+ LS HPYGCRVIQ
Sbjct: 503 IQELDGHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQ 560
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 91/175 (52%), Gaps = 8/175 (4%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F L + +I S +G R IQ+ +EHC +E K+ + +E+LPH KL D +GNYV+
Sbjct: 536 QFILRALRPQIHVLSAHPYGCRVIQRAIEHCHSERKL-IIEELLPHILKLTQDQYGNYVV 594
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH-- 515
Q GS +K + + ++ +L LS + V+++ + I + +++ ++
Sbjct: 595 QHILRTGSESDKKYIFDLMIDHLLFLSCHKFASNVVERCISYISDVDRRRILNKIISEKA 654
Query: 516 -----VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
+M ++D+ N+VIQK ++ P E+ + +IS ++ L YG +I
Sbjct: 655 ENCSILMLMMKDKYANYVIQKLLDASPEEERDLLISYIYPHISVLKKFTYGKHLI 709
>sp|Q07807|PUF3_YEAST mRNA-binding protein PUF3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PUF3 PE=1 SV=1
Length = 879
Score = 198 bits (504), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 94/166 (56%), Positives = 117/166 (70%)
Query: 401 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKF 460
L DI G +EF DQHGSRFIQ++L A EK +F E+ A +L DVFGNYVIQKF
Sbjct: 536 LKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKF 595
Query: 461 FEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCV 520
FE GS Q+ L ++ G + LSLQMY CRVIQKALE I+ +Q+ +LVLEL V++ +
Sbjct: 596 FEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMI 655
Query: 521 RDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+DQNGNHVIQK IE +P EK+ FI+S+ G + LSTH YGCRVIQ
Sbjct: 656 KDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQ 701
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 19/177 (10%)
Query: 399 FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQ 458
F LS + G I S +G R IQ+ LE S+E++ S+ E+ L+ D +GNYVIQ
Sbjct: 678 FILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQ 737
Query: 459 ------KFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV--- 509
+F D ++E+ E + V+ S + V++K++ +QK ++
Sbjct: 738 YVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKI 797
Query: 510 ----------LELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLS 556
LE D ++ ++DQ N+VIQK + E + I+ A R + L+
Sbjct: 798 LPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEGEGKKLIVIAIRAYLDKLN 854
>sp|Q92359|YDHE_SCHPO Pumilio domain-containing protein C6G9.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC6G9.14 PE=4 SV=1
Length = 681
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 92/160 (57%), Gaps = 1/160 (0%)
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPD 467
I+ F DQHG R++Q+ LE + +VF E P+ + LM D FGNY+ QK FEH S
Sbjct: 348 ILSFCKDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGNYLCQKLFEHASEA 407
Query: 468 QRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIEL-HQKSQLVLELDGHVMRCVRDQNGN 526
QR + + +++P+S M+G R +QK ++++ Q S +V L +V+ +D NGN
Sbjct: 408 QRSTFIQIIAPKLVPISFNMHGTRALQKIIDLVSSPDQISCIVNALRPNVVLLTKDLNGN 467
Query: 527 HVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
HVIQKC+ E +FI A +STH +GC V+Q
Sbjct: 468 HVIQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQ 507
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 1/164 (0%)
Query: 404 IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-PHASKLMTDVFGNYVIQKFFE 462
IA ++V S + HG+R +Q+ ++ S+ +++S L P+ L D+ GN+VIQK
Sbjct: 416 IAPKLVPISFNMHGTRALQKIIDLVSSPDQISCIVNALRPNVVLLTKDLNGNHVIQKCLN 475
Query: 463 HGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRD 522
S + + + + + L +S +GC V+Q+ + Q QLV + H + V+D
Sbjct: 476 KFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQIEQLVEHIVPHALTLVQD 535
Query: 523 QNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
GN+V+Q +E E IIS F +V LST + V++
Sbjct: 536 AFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVME 579
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 84/170 (49%), Gaps = 2/170 (1%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
+F I ++ S +HG +Q+ +H S + + + ++PHA L+ D FGNYV+
Sbjct: 483 QFIFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQIEQLVEHIVPHALTLVQDAFGNYVL 542
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL--DGH 515
Q E +P+ + + + +V LS Q + V++K + K +L+ EL + H
Sbjct: 543 QYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVMEKCIFFAPAAIKEKLISELMDEKH 602
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
+ + +RD N+VIQ ++ ++ ++ + + ++ P G R++
Sbjct: 603 LPKLLRDSFANYVIQTALDNASVKQRAELVERIKPLIPSIKNTPCGRRIL 652
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 387 FLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL--PHA 444
++ EL + N + +S ++ S + S +++ + A K + E++ H
Sbjct: 544 YVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVMEKCIFFAPAAIKEKLISELMDEKHL 603
Query: 445 SKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQK 495
KL+ D F NYVIQ ++ S QR EL E++ + + G R++ K
Sbjct: 604 PKLLRDSFANYVIQTALDNASVKQRAELVERIKPLIPSIKNTPCGRRILSK 654
>sp|Q9LM20|PUM8_ARATH Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana
GN=APUM8 PE=3 SV=2
Length = 515
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 101/171 (59%), Gaps = 4/171 (2%)
Query: 400 ELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQK 459
++S+ G + + DQHG RF+Q E SA + + +F EV+PH +LM D FGNY++QK
Sbjct: 195 KVSEFQGYVYFMAKDQHGCRFLQWIFEDGSALDALVIFSEVIPHVVELMMDPFGNYLMQK 254
Query: 460 FFEHGSPDQRKELAEKLV---GQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-LDGH 515
+ + +QR ++ + GQ++ +SL YG RV+Q+ +E I+ ++ LV L
Sbjct: 255 LLDVCNEEQRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVESIKTRKQISLVKSALRPG 314
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ +RD NGNHVIQ+C++C+ E EFI ++TH +GC V+Q
Sbjct: 315 FLNLIRDLNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQ 365
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 82/162 (50%), Gaps = 1/162 (0%)
Query: 406 GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-PHASKLMTDVFGNYVIQKFFEHG 464
G+++ S++ +G+R +Q+ +E +++S+ K L P L+ D+ GN+VIQ+ +
Sbjct: 276 GQLIRISLNAYGTRVVQRLVESIKTRKQISLVKSALRPGFLNLIRDLNGNHVIQRCLQCL 335
Query: 465 SPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQN 524
S + + + E + ++ +GC V+QK + Q+ +LV E+ + + +D
Sbjct: 336 STEDNEFIFEDATKFCIDIATHRHGCCVLQKCIAYSSGLQREKLVTEISRNSLFLAQDPY 395
Query: 525 GNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
GN+ +Q +E I +++ +G LS + +++
Sbjct: 396 GNYAVQFVLELRDFSAIAAMLAQLKGHYVELSMQKFSSHMVE 437
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 5/156 (3%)
Query: 414 DQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELA 473
D +G+ IQ+ L+ S E+ +F++ + T G V+QK + S QR++L
Sbjct: 321 DLNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQKCIAYSSGLQREKLV 380
Query: 474 EKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCI 533
++ L L+ YG +Q LE+ + + ++ +L GH + + +H++++C+
Sbjct: 381 TEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVELSMQKFSSHMVERCL 440
Query: 534 ECVPAEK---IEFIISAFRGQVATLSTHPYGCRVIQ 566
P + + +IS L PY VIQ
Sbjct: 441 THCPESRPQIVRELISV--PHFDILIQDPYANFVIQ 474
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 4/175 (2%)
Query: 393 SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVF 452
S+ +F D ++ + +HG +Q+ + + S ++ + E+ ++ L D +
Sbjct: 336 STEDNEFIFEDATKFCIDIATHRHGCCVLQKCIAYSSGLQREKLVTEISRNSLFLAQDPY 395
Query: 453 GNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL 512
GNY +Q E + +L G + LS+Q + ++++ L + Q+V EL
Sbjct: 396 GNYAVQFVLELRDFSAIAAMLAQLKGHYVELSMQKFSSHMVERCLTHCP-ESRPQIVREL 454
Query: 513 DG--HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
H ++D N VIQ + ++ R + L +PY R+
Sbjct: 455 ISVPHFDILIQDPYANFVIQAALAVTKGSLHATLVEVIRPH-SILRNNPYCKRIF 508
Score = 41.2 bits (95), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 387 FLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL--PHA 444
F+ EL+ +A L+ + G VE S+ + S +++ L HC E + + +E++ PH
Sbjct: 402 FVLELRDFSAIAAMLAQLKGHYVELSMQKFSSHMVERCLTHC-PESRPQIVRELISVPHF 460
Query: 445 SKLMTDVFGNYVIQ 458
L+ D + N+VIQ
Sbjct: 461 DILIQDPYANFVIQ 474
>sp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana
GN=APUM7 PE=3 SV=2
Length = 650
Score = 122 bits (306), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 102/170 (60%), Gaps = 4/170 (2%)
Query: 401 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKF 460
+ DI G + + DQHG RF+Q+ + ++ + + +F EV+ H +LM D FGNY++QK
Sbjct: 331 MCDIQGYVYLMAKDQHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLMQKL 390
Query: 461 FEHGSPDQRKEL---AEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV-LELDGHV 516
+ + +QR ++ A + GQ++ +SL YG RV+Q+ +E I ++ LV L L
Sbjct: 391 LDVCTEEQRTQIVLVATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALRPGF 450
Query: 517 MRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ ++D NGNHVIQ+C++C+ E +FI A ++TH +GC V+Q
Sbjct: 451 LDLIKDLNGNHVIQRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQ 500
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 82/162 (50%), Gaps = 1/162 (0%)
Query: 406 GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-PHASKLMTDVFGNYVIQKFFEHG 464
G+++ S++ +G+R +Q+ +E + +++S+ K L P L+ D+ GN+VIQ+ +
Sbjct: 411 GQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALRPGFLDLIKDLNGNHVIQRCLQCL 470
Query: 465 SPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQN 524
S + K + + ++ +GC V+QK + Q+ +L+ E+ + + +D
Sbjct: 471 STEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQREKLIAEISRNSLLLAQDPF 530
Query: 525 GNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
GN+ +Q IE + +++ +G LS + +++
Sbjct: 531 GNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVE 572
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 75/178 (42%), Gaps = 10/178 (5%)
Query: 393 SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVF 452
S+ KF E + +HG +Q+ + + +++ + E+ ++ L D F
Sbjct: 471 STEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQREKLIAEISRNSLLLAQDPF 530
Query: 453 GNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELH---QKSQLV 509
GNY +Q E P + +L G + LS+Q + ++++ L +H + Q+V
Sbjct: 531 GNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVERCL----MHCPESRPQIV 586
Query: 510 LELDG--HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
EL H + ++D N VIQ + ++ R + L +PY R+
Sbjct: 587 RELVSVPHFDQLLQDPYANFVIQAALAATKGPLHASLVEVIRPH-SILRNNPYCKRIF 643
Score = 42.0 bits (97), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 387 FLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEV--LPHA 444
F+ EL+ +A L+ + G V+ S+ + S +++ L HC E + + +E+ +PH
Sbjct: 537 FVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVERCLMHC-PESRPQIVRELVSVPHF 595
Query: 445 SKLMTDVFGNYVIQ 458
+L+ D + N+VIQ
Sbjct: 596 DQLLQDPYANFVIQ 609
>sp|P25339|PUF4_YEAST Pumilio homology domain family member 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PUF4 PE=1 SV=2
Length = 888
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 108/194 (55%), Gaps = 12/194 (6%)
Query: 374 EGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEK 433
E QR E+S + F + + L G I DQHG RF+Q++L+ ++
Sbjct: 545 EKQRKIEESSR--FADAV---------LDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAA 593
Query: 434 VSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVI 493
++F+E + +LMTD FGNY+IQK E + +QR L + + +SL +G R +
Sbjct: 594 DAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRAL 653
Query: 494 QKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQV 552
QK +E I+ +++Q+V++ L + ++ +D NGNHVIQKC++ + E +FI A
Sbjct: 654 QKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSC 713
Query: 553 ATLSTHPYGCRVIQ 566
++TH +GC V+Q
Sbjct: 714 IDIATHRHGCCVLQ 727
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 10/187 (5%)
Query: 387 FLEELKSSNAQKFELSDIAG-RIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-PHA 444
LEE+ + Q+ L+ I+ VE S++ HG+R +Q+ +E +E+ + + L P+
Sbjct: 620 LLEEVTTE--QRIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYT 677
Query: 445 SKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQ 504
+L D+ GN+VIQK + P+ + + + + + ++ +GC V+Q+ L+ Q
Sbjct: 678 VQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQ 737
Query: 505 KSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEF-----IISAFRGQVATLSTHP 559
L +L V + D GN+V+Q I AEK ++ I+ + + LS H
Sbjct: 738 CDNLCDKLLALVDKLTLDPFGNYVVQYII-TKEAEKNKYDYTHKIVHLLKPRAIELSIHK 796
Query: 560 YGCRVIQ 566
+G VI+
Sbjct: 797 FGSNVIE 803
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 92/192 (47%), Gaps = 18/192 (9%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
L+ LK N Q F I+ ++ + +HG +Q+ L+H + E+ ++ ++L KL
Sbjct: 694 LQRLKPENFQ-FIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKL 752
Query: 448 MTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLP----LSLQMYGCRVIQKALEVIELH 503
D FGNYV+Q + + + K+V + P LS+ +G VI+K L+ +
Sbjct: 753 TLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIEKILKTAIVS 812
Query: 504 QKSQLVLEL-----DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL--- 555
+ ++LE+ + + + D GN+V+Q ++ + ++ +++ VA L
Sbjct: 813 EP--MILEILNNGGETGIQSLLNDSYGNYVLQTALD-ISHKQNDYLYKRLSEIVAPLLVG 869
Query: 556 --STHPYGCRVI 565
P+G R+I
Sbjct: 870 PIRNTPHGKRII 881
>sp|P39016|MPT5_YEAST Suppressor protein MPT5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MPT5 PE=1 SV=2
Length = 859
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 94/171 (54%), Gaps = 15/171 (8%)
Query: 409 VEFSVDQHGSRFIQQKLEHCSAEEKVS--VFKEVLPHASKLMTDVFGNYVIQKFFEHGSP 466
++ + DQ G RF+Q+KLE S V +++++ P L+ D FGNY++QK ++ +
Sbjct: 216 IKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQKLCDYLTA 275
Query: 467 DQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDG---------HVM 517
+Q+ L + + V +S+ YG R +QK ++ ++ + Q+ L + G V+
Sbjct: 276 EQKTLLIQTIYPNVFQISINQYGTRSLQKIIDTVD--NEVQIDLIIKGFSQEFTSIEQVV 333
Query: 518 RCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQ--VATLSTHPYGCRVIQ 566
+ D NGNHVIQKCI K FII A Q + T+STH +GC V+Q
Sbjct: 334 TLINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQ 384
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 88/177 (49%), Gaps = 17/177 (9%)
Query: 404 IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKE-------VLPHASKLMTDVFGNYV 456
I + + S++Q+G+R +Q+ ++ E ++ + + + L+ D+ GN+V
Sbjct: 285 IYPNVFQISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQEFTSIEQVVTLINDLNGNHV 344
Query: 457 IQKFFEHGSPDQRKELAEKLVGQ--VLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDG 514
IQK SP + + + +V Q ++ +S +GC V+QK L V L Q ++ +++
Sbjct: 345 IQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQKLLSVCTLQQIFKISVKIVQ 404
Query: 515 HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISA-----FRGQVATLSTHPYGCRVIQ 566
+ + DQ GN++IQ ++ ++++F + A ++ LS + V++
Sbjct: 405 FLPGLINDQFGNYIIQFLLDI---KELDFYLLAELFNRLSNELCQLSCLKFSSNVVE 458
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 406 GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGS 465
I+ S +HG +Q+ L C+ ++ + +++ L+ D FGNY+IQ +
Sbjct: 368 NNIITISTHKHGCCVLQKLLSVCTLQQIFKISVKIVQFLPGLINDQFGNYIIQFLLDIKE 427
Query: 466 PD--QRKELAEKLVGQVLPLSLQMYGCRVIQKALE 498
D EL +L ++ LS + V++K ++
Sbjct: 428 LDFYLLAELFNRLSNELCQLSCLKFSSNVVEKFIK 462
>sp|Q9LVC3|PUM12_ARATH Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2
Length = 596
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 98/175 (56%), Gaps = 5/175 (2%)
Query: 397 QKFE-LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455
QK+ +++ G+I + DQHG RF+Q+ + +F E++ + S+LM D FGNY
Sbjct: 270 QKYNSIAEARGKIYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFGNY 329
Query: 456 VIQKFFEHGSPDQRKELAEKLV---GQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL 512
++QK E + DQR ++ + G ++ +S M+G R +QK +E + ++ +++
Sbjct: 330 LVQKLLEVCNEDQRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVETAKREEEISIIISA 389
Query: 513 DGH-VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
H ++ +++ NGNHV+Q+C++ + +F+ A L+T +GC V+Q
Sbjct: 390 LKHGIVHLIKNVNGNHVVQRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQ 444
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 2/170 (1%)
Query: 398 KFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457
KF VE + D+HG +Q+ L + E+K + E+ +A L D FGNYV+
Sbjct: 420 KFLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQKQHLVSEIASNALLLSQDPFGNYVL 479
Query: 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD--GH 515
Q FE E+ E+L G LS+Q V++K L++ + +++++ EL G
Sbjct: 480 QYVFELQLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHRARIIRELINYGR 539
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVI 565
+ + + D GN+VIQ ++ ++ A + +++L T+PYG +V+
Sbjct: 540 LDQVMLDPYGNYVIQAALKQSKGNVHALLVDAIKLNISSLRTNPYGKKVL 589
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 1/162 (0%)
Query: 406 GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHA-SKLMTDVFGNYVIQKFFEHG 464
G +++ S D HG+R +Q+ +E EE++S+ L H L+ +V GN+V+Q+ ++
Sbjct: 355 GLLIKISCDMHGTRAVQKIVETAKREEEISIIISALKHGIVHLIKNVNGNHVVQRCLQYL 414
Query: 465 SPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQN 524
P K L E + + L+ +GC V+QK L E QK LV E+ + + +D
Sbjct: 415 LPYCGKFLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQKQHLVSEIASNALLLSQDPF 474
Query: 525 GNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
GN+V+Q E I+ G LS V++
Sbjct: 475 GNYVLQYVFELQLQWATFEILEQLEGNYTELSMQKCSSNVVE 516
>sp|Q1PFN9|PUM9_ARATH Pumilio homolog 9 OS=Arabidopsis thaliana GN=APUM9 PE=2 SV=1
Length = 564
Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 5/187 (2%)
Query: 394 SNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFG 453
SN + +I G + + DQ G R +Q+ +E + E + ++ H +L D FG
Sbjct: 240 SNNDLVSMVEIYGSVNLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVELSMDPFG 299
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVG---QVLPLSLQMYGCRVIQKALEVIELHQKSQLVL 510
NY++QK F+ +QR + L +++ + L YG RV+QK +E ++ Q+ LV
Sbjct: 300 NYIVQKLFDVSDEEQRTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQIALVK 359
Query: 511 E-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQPH- 568
L + V+D NGNHVIQ C++ + EF++ A A ++ H +GC V+Q
Sbjct: 360 SGLKPGFLALVKDLNGNHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQCCI 419
Query: 569 NNASGFQ 575
+N+ G Q
Sbjct: 420 SNSVGLQ 426
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 97/195 (49%), Gaps = 16/195 (8%)
Query: 376 QRTFE--DSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEK 433
Q+ F+ D ++ + + + +SN ++ ++ ++ +G+R +Q+ +E +++
Sbjct: 304 QKLFDVSDEEQRTLIVSVLTSNPRE---------LIRICLNTYGTRVVQKMIETVKTKQQ 354
Query: 434 VSVFKEVL-PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRV 492
+++ K L P L+ D+ GN+VIQ + P+ + + E +++ +GC V
Sbjct: 355 IALVKSGLKPGFLALVKDLNGNHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCV 414
Query: 493 IQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIE-CVPAEKIEFIISAFRGQ 551
+Q + Q+ +LV E+ + + +D GN+V+Q I+ V A K ++ FR
Sbjct: 415 LQCCISNSVGLQRERLVAEISRNSLHLSQDPFGNYVVQYLIDQQVSAVK---LLVQFRMH 471
Query: 552 VATLSTHPYGCRVIQ 566
A L+T + VI+
Sbjct: 472 YAELATQKFSSHVIE 486
>sp|Q09312|FBF2_CAEEL Fem-3 mRNA-binding factor 2 OS=Caenorhabditis elegans GN=fbf-2 PE=1
SV=1
Length = 632
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 104/186 (55%), Gaps = 17/186 (9%)
Query: 398 KFELSDI--AGRIVEFSVDQHGSRFIQQKLE-HCSAEEKVSVFKEVLPHAS---KLMTDV 451
+ LS++ +G +++F+VD+ G +F+++ ++ ++ +K +F++V+ KL T++
Sbjct: 182 RLSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNI 241
Query: 452 FGNYVIQKFF-------EHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQ 504
FGNY++Q + G ++++L + Q+ + L + CRVIQ +L+ ++L
Sbjct: 242 FGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSL 301
Query: 505 KSQLVLEL--DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIIS--AFRGQVATLSTHPY 560
+LV L D ++ DQN NHVIQK + +P + EFI+ A + + + Y
Sbjct: 302 ACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKY 361
Query: 561 GCRVIQ 566
GCRV+Q
Sbjct: 362 GCRVVQ 367
>sp|Q9LP21|PUM10_ARATH Putative pumilio homolog 10 OS=Arabidopsis thaliana GN=APUM10 PE=3
SV=2
Length = 528
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 101/218 (46%), Gaps = 18/218 (8%)
Query: 367 WQGQRTFEGQRTFEDSKKHSFLEELKSSNA--------------QKFELSDIAGRIVEFS 412
+G F+G FE + L ++ S A + +I G + +
Sbjct: 163 LRGNDAFKGSLMFEGIRVSQILAAMEGSGASYPDEPKINGGLPLDLVSMVEIYGSVNLMA 222
Query: 413 VDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKEL 472
DQ G R +Q+ +E + + +F E++ H +L D GNY++QK +QR +
Sbjct: 223 RDQIGCRALQKLVEEGTVLDSKVIFLEIIDHVVELSMDPLGNYIVQKLLVVSDEEQRTMI 282
Query: 473 AEKLVG---QVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHV 528
L +++ + L G RVIQK ++ ++ Q+ LV L+ + V D NG HV
Sbjct: 283 VSVLTSKPRELIKICLNTNGTRVIQKMIKTVKTKQQIALVKSALEPGFLVLVNDSNGYHV 342
Query: 529 IQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+Q C+E + +F++ A A L+TH YGC V+Q
Sbjct: 343 LQSCLEFLVPNDNKFVVEAATEYCAQLATHQYGCYVLQ 380
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-PHASKLMTDVFGNYVIQKFFEHGSP 466
+++ ++ +G+R IQ+ ++ ++++++ K L P L+ D G +V+Q E P
Sbjct: 293 LIKICLNTNGTRVIQKMIKTVKTKQQIALVKSALEPGFLVLVNDSNGYHVLQSCLEFLVP 352
Query: 467 DQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGN 526
+ K + E L+ YGC V+Q +L Q +LV E+ +R +D GN
Sbjct: 353 NDNKFVVEAATEYCAQLATHQYGCYVLQCSLINTVGLQHERLVAEISRDSLRLSQDPFGN 412
Query: 527 HVIQKCIECVPAEKIEFI--ISAFRGQVATLSTHPYGCRVIQ 566
+V+Q C+ +++ + + FR L+T + VI+
Sbjct: 413 YVVQ----CLIDQQVSSVNLLLPFRTHCIELATQKFSSHVIE 450
>sp|Q9N5M6|FBF1_CAEEL Fem-3 mRNA-binding factor 1 OS=Caenorhabditis elegans GN=fbf-1 PE=1
SV=1
Length = 614
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 104/186 (55%), Gaps = 17/186 (9%)
Query: 398 KFELSDI--AGRIVEFSVDQHGSRFIQQKLE-HCSAEEKVSVFKEVLPHAS---KLMTDV 451
+ LS++ +G +++F+VD+ G +F+++ ++ ++ +K +F++V+ KL T++
Sbjct: 180 RLSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNI 239
Query: 452 FGNYVIQKF-------FEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQ 504
FGNY +Q+ ++ + ++++L + Q+ + L + CRVIQ +L+ ++L
Sbjct: 240 FGNYFVQEIIGMSLTTYDDDNIKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSL 299
Query: 505 KSQLVLEL--DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIIS--AFRGQVATLSTHPY 560
+LV L D ++ DQN NHVIQK + +P + EFI+ A + + Y
Sbjct: 300 ACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICFDKY 359
Query: 561 GCRVIQ 566
GCRV+Q
Sbjct: 360 GCRVVQ 365
>sp|Q9LDW3|PUM11_ARATH Pumilio homolog 11 OS=Arabidopsis thaliana GN=APUM11 PE=3 SV=2
Length = 556
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 105/207 (50%), Gaps = 13/207 (6%)
Query: 364 YSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQ 423
+S G R +G +K+ S +L S + D G + + DQ G R +Q+
Sbjct: 211 FSAMGGSRELDGSAKCMKNKEDSL--DLAS-------MVDSYGSVYLMAKDQLGCRLLQK 261
Query: 424 KLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLV---GQV 480
++ + + + +FKEV+ + +L TD FGNY+IQK E + +QR ++ +L G +
Sbjct: 262 FVDEGNFVDVMIIFKEVINNVIELGTDPFGNYLIQKLIEVCNEEQRTQILIRLTSKPGLL 321
Query: 481 LPLSLQMYGCRVIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAE 539
+ +S+ YG RV+QK +E + ++ LV L + R+ NGNHVI C++
Sbjct: 322 VKISINNYGTRVVQKLIETVTTKEQISLVKSALVPGFLSLFRELNGNHVILNCLKFFSPN 381
Query: 540 KIEFIISAFRGQVATLSTHPYGCRVIQ 566
+FI+ A ++T +GC V+Q
Sbjct: 382 DNKFILEAATKFCIEIATTRHGCCVLQ 408
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 87/170 (51%), Gaps = 7/170 (4%)
Query: 400 ELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL-PHASKLMTDVFGNYVIQ 458
L+ G +V+ S++ +G+R +Q+ +E + +E++S+ K L P L ++ GN+VI
Sbjct: 313 RLTSKPGLLVKISINNYGTRVVQKLIETVTTKEQISLVKSALVPGFLSLFRELNGNHVIL 372
Query: 459 KFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMR 518
+ SP+ K + E + ++ +GC V+Q+ + Q +LV E+ + +
Sbjct: 373 NCLKFFSPNDNKFILEAATKFCIEIATTRHGCCVLQRCVSYSVGEQHEKLVDEISRNSLL 432
Query: 519 CVRDQNGNHVIQKCIECVPAEKI--EFIISAFRGQVATLSTHPYGCRVIQ 566
+D GN+++Q IE +K+ ++ RG L+T +G V++
Sbjct: 433 LAQDPFGNYLVQYIIE----KKVGGVNVLFELRGNYVKLATQKFGSHVVE 478
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 24/193 (12%)
Query: 385 HSFLEELK--SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLP 442
H L LK S N KF L +E + +HG +Q+ + + E+ + E+
Sbjct: 369 HVILNCLKFFSPNDNKFILEAATKFCIEIATTRHGCCVLQRCVSYSVGEQHEKLVDEISR 428
Query: 443 HASKLMTDVFGNYVIQKFFEH--GSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVI 500
++ L D FGNY++Q E G + EL G + L+ Q +G V++K L
Sbjct: 429 NSLLLAQDPFGNYLVQYIIEKKVGGVNVLFELR----GNYVKLATQKFGSHVVEKCLRYY 484
Query: 501 ELHQKSQLVLELD-----GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQV--- 552
+SQ+V EL G+++ +D N+VIQ C ++ F+ ++ +V
Sbjct: 485 P-ESRSQIVNELVSVLNFGYLL---QDPYANYVIQ----CALSKTKGFVRASLVEKVRRY 536
Query: 553 ATLSTHPYGCRVI 565
L PY R+
Sbjct: 537 ENLKMTPYCKRIF 549
>sp|Q09829|YAD3_SCHPO Pumilio domain-containing protein C4G8.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC4G8.03c PE=4 SV=1
Length = 780
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Query: 406 GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGS 465
G + DQ+G R++Q+ L+ F E+ +LM D FGNY+ QK F + S
Sbjct: 465 GHLSTICKDQYGCRYLQKLLDENPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFVYAS 524
Query: 466 PDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL---DGHVMRCVRD 522
+Q+ + + ++ + +YG R +Q ++ + +++ L+L++ + C D
Sbjct: 525 REQKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLAC--D 582
Query: 523 QNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
NG HV+QKCI P EK+E + + + TL+T+ +GC ++Q
Sbjct: 583 NNGTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQ 626
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 86/176 (48%), Gaps = 2/176 (1%)
Query: 393 SSNAQKFE-LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVF-KEVLPHASKLMTD 450
+S QK L+ I IV+ + +G+R +Q ++ ++ E++S+ K ++P + L D
Sbjct: 523 ASREQKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLACD 582
Query: 451 VFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVL 510
G +V+QK P++ + L + ++ L+ +GC ++Q+ L+ + +LV
Sbjct: 583 NNGTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNGDIQERLVN 642
Query: 511 ELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ + V++ GN+++Q +E E II F G + LS + I+
Sbjct: 643 SIIKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFSSNAIE 698
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPD 467
++ + ++HG +Q+ L+ + + + + ++ L+ + +GNY++Q E
Sbjct: 612 LITLATNRHGCCILQRCLDRTNGDIQERLVNSIIKSCLLLVQNAYGNYLVQHVLELNIQP 671
Query: 468 QRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDG--HVMRCVRDQNG 525
+ + EK G + LSLQ + I++ + + Q++ E ++ + + D
Sbjct: 672 YTERIIEKFFGNICKLSLQKFSSNAIEQCIRTASPSTREQMLQEFLSFPNIEQLLDDCYA 731
Query: 526 NHVIQKCIECVPAEKIEFII 545
N+V+Q+ + V E +F+I
Sbjct: 732 NYVMQRFLN-VADESQKFLI 750
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 406 GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL--PHASKLMTDVFGNYVIQKFFEH 463
G I + S+ + S I+Q + S + + +E L P+ +L+ D + NYV+Q+F
Sbjct: 682 GNICKLSLQKFSSNAIEQCIRTASPSTREQMLQEFLSFPNIEQLLDDCYANYVMQRFLNV 741
Query: 464 GSPDQRKELAEKLVGQVLP 482
Q K L + + V+P
Sbjct: 742 ADESQ-KFLILRSISHVIP 759
>sp|O74438|MCP2_SCHPO Meiotic coiled-coil protein 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mcp2 PE=4 SV=1
Length = 703
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 13/176 (7%)
Query: 399 FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQ 458
++ + I +I+ S DQ S F+QQKL+ S + K ++ ++ LM + FGN+++Q
Sbjct: 358 YDWNVIIDKII-VSNDQQSSIFLQQKLKISSYDMKQNIVDSIISQIHPLMLNRFGNFLVQ 416
Query: 459 KFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL----EVIELHQKSQLVLELDG 514
+ FEHG+ Q +++ ++G +L L+ +GC V+QKA+ E I+L +L L +D
Sbjct: 417 RCFEHGTAPQIRQMGSAMLGNMLKLATDPFGCHVVQKAIDNVTEDIKLAMMDELFLTIDV 476
Query: 515 HVMRCVRDQNGNHVIQKCIEC----VPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+M HV QK E P + + +A RG+ ++ G V+Q
Sbjct: 477 TIMH----HYACHVWQKLFETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQ 528
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 87/170 (51%), Gaps = 10/170 (5%)
Query: 404 IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEH 463
+ G+ E +V ++GS +Q E+C ++K +E++ H + +GN+V+Q E+
Sbjct: 510 LRGKWHEVAVGENGSLVVQNMFENCVEKDKRECIEEIIFHLDGIARGQWGNWVVQHMVEN 569
Query: 464 GSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALE-----VIELHQKSQLVLELDGH--- 515
G + K + + L+ + + S+ + +VI+KA++ I L+ K +D
Sbjct: 570 GQGEDLKRVIDALLNRAVEFSIDQFASKVIEKAIKSGPKNFISLYLKQITNARVDRTRQP 629
Query: 516 VMRCVRDQNGNHVIQKCIEC-VPAEKIEFIISAFRGQVATLSTHPYGCRV 564
++ DQ GN++IQ+ I+ PAEK +I+ + + +L YG +V
Sbjct: 630 LIDIASDQYGNYLIQQIIQLGQPAEK-NLVITHIKKHMVSLRGSKYGQKV 678
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 75/169 (44%), Gaps = 4/169 (2%)
Query: 402 SDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFF 461
S + G +++ + D G +Q+ +++ + + K+++ E+ + + +V QK F
Sbjct: 432 SAMLGNMLKLATDPFGCHVVQKAIDNVTEDIKLAMMDELFLTIDVTIMHHYACHVWQKLF 491
Query: 462 E---HGSP-DQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVM 517
E + P + + L G+ +++ G V+Q E K + + E+ H+
Sbjct: 492 ETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVEKDKRECIEEIIFHLD 551
Query: 518 RCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
R Q GN V+Q +E E ++ +I A + S + +VI+
Sbjct: 552 GIARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFASKVIE 600
>sp|Q10238|MPF1_SCHPO Meiotic PUF family protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mpf1 PE=4 SV=1
Length = 581
Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 82/169 (48%), Gaps = 8/169 (4%)
Query: 404 IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEH 463
+ G+ ++ SV + GS +Q E+C ++K + E++ + +++ +GN+VIQ EH
Sbjct: 404 MQGKWLQVSVSEMGSLVVQTIFENCKEKDKRTCLDEIINNMDQIICGQWGNWVIQHIIEH 463
Query: 464 GSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDG--------H 515
GS ++ + L+ +V S Y +V+++AL V + + V E+
Sbjct: 464 GSEPDKQRILNSLLKEVESYSTNRYASKVVERALRVCHVTFFDRYVKEITTPQNELPTIF 523
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRV 564
+ +Q GN+++Q ++ +I + + + +L H YG R+
Sbjct: 524 LQEIASNQYGNYIVQYLLQVATPSQINLMAEHLKKHMVSLRGHKYGQRI 572
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 95/192 (49%), Gaps = 6/192 (3%)
Query: 379 FEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFK 438
FE + HS E L+ S A + + +I+ F DQ S +QQ+L++ E+ +++
Sbjct: 233 FEKNSVHSGKETLQYS-ATISKWKAMIEQII-FQNDQAASLSLQQQLKNEDIEDNINLIN 290
Query: 439 EVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALE 498
+LP + LM + FGN++IQK FE+ + Q + + L V LS+ +G V+QK+LE
Sbjct: 291 TILPFSVTLMKNKFGNFLIQKCFEYSTEAQLQSFSYFLKKHVKELSIDAFGSHVLQKSLE 350
Query: 499 VIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAF----RGQVAT 554
+ + L+ EL + + ++ HV QK E ++ I F +G+
Sbjct: 351 IYPERFTNNLIEELIECLPATLMQRHSCHVWQKFFETRRKSLVDGIFDHFNKKMQGKWLQ 410
Query: 555 LSTHPYGCRVIQ 566
+S G V+Q
Sbjct: 411 VSVSEMGSLVVQ 422
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 12/171 (7%)
Query: 404 IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEH 463
+ + E S+D GS +Q+ LE ++ +E++ + +V QKFFE
Sbjct: 328 LKKHVKELSIDAFGSHVLQKSLEIYPERFTNNLIEELIECLPATLMQRHSCHVWQKFFE- 386
Query: 464 GSPDQRKELAE--------KLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGH 515
+RK L + K+ G+ L +S+ G V+Q E + K + E+ +
Sbjct: 387 ---TRRKSLVDGIFDHFNKKMQGKWLQVSVSEMGSLVVQTIFENCKEKDKRTCLDEIINN 443
Query: 516 VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ + + Q GN VIQ IE + I+++ +V + ST+ Y +V++
Sbjct: 444 MDQIICGQWGNWVIQHIIEHGSEPDKQRILNSLLKEVESYSTNRYASKVVE 494
>sp|Q9P789|YN8E_SCHPO Pumilio domain-containing protein P35G2.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP35G2.14 PE=1 SV=2
Length = 1065
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 11/177 (6%)
Query: 400 ELSDIAGRIVEFSVDQHGSRFIQQKLEH---------CSAEEKVSVFKEVLPHASKLMTD 450
EL+D A +I S R KL C+ EE + L S L +D
Sbjct: 725 ELTDFAAQIPSISKAFSSRRLNAPKLRQVRKRIDNGLCTQEEVEDIAINWLDEVSDLSSD 784
Query: 451 VFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVL 510
GN V+QK F++ S ++ + E++ + + + G QK ++V + +L+
Sbjct: 785 HLGNTVVQKLFDYCSDPVKEMMLERIAPHLAQIGIHKNGTWAAQKIVDVASTEAQMRLIA 844
Query: 511 E-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ L ++ DQ GN+V+Q C++ A +F+ A Q ++ YG R ++
Sbjct: 845 KHLQPYIPLLFADQFGNYVVQTCLK-FGAPMNDFVFEAILNQFWVIAQSRYGSRAVR 900
>sp|O81465|PUM15_ARATH Pumilio homolog 15 OS=Arabidopsis thaliana GN=APUM15 PE=3 SV=1
Length = 477
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 92/231 (39%), Gaps = 60/231 (25%)
Query: 392 KSSNAQKFELSDIA----GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL 447
K ++ Q + DI V V HG+ IQ + +EE++S F E L + S L
Sbjct: 210 KCTDEQITRVLDIVLEEPFEFVRLCVHTHGTHAIQGLMRSLCSEEQISRFMETLCYVSLL 269
Query: 448 MT-DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL--------- 497
+T DV + VI F SP + L E +V +++ GC +++K +
Sbjct: 270 LTKDVIAHRVILFCFNQFSPSHTRYLLEVIVQNCYQVAIDQNGCCMLKKLIRQSSRELRD 329
Query: 498 ----EVIE------------LHQKSQLVL---------------------ELDGHVMRCV 520
E+I L KS LV LDG+ ++
Sbjct: 330 PLIKEIISIAVRLCGNCYGTLTPKSLLVRNYVVQYLLRLKDYEVTSALSKHLDGNYVQLS 389
Query: 521 RDQNGNHVIQKCIECVPAEKIEF----IISAFRGQVATLSTHPYGCRVIQP 567
D+ G+HV+QKC+ E EF II+ + +L PYG VIQ
Sbjct: 390 YDKYGSHVVQKCL-----ESREFSSRRIIAELLSDIDSLLVDPYGDYVIQT 435
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 387 FLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASK 446
+L LK + G V+ S D++GS +Q+ LE + + E+L
Sbjct: 364 YLLRLKDYEVTSALSKHLDGNYVQLSYDKYGSHVVQKCLESREFSSR-RIIAELLSDIDS 422
Query: 447 LMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVI 493
L+ D +G+YVIQ + + + +E L L + CR++
Sbjct: 423 LLVDPYGDYVIQTAWIVSEVRDKHDDSESFYVDFYQLILWLVFCRIM 469
>sp|Q9FMH4|PUM13_ARATH Putative pumilio homolog 13 OS=Arabidopsis thaliana GN=APUM13 PE=3
SV=1
Length = 527
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 12/176 (6%)
Query: 401 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV-------SVFKEVLPHASKLMTDVFG 453
L ++ + ++DQ+G +QQ C +E+V + EV+ HA KL + G
Sbjct: 356 LEVVSQHCYQIAIDQNGCCLLQQ----CFDKERVPNHEIRQRLISEVIEHALKLCLNCHG 411
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELD 513
NYV+Q E + + L KL+ L+ YG V+QK L++ + K +V++L
Sbjct: 412 NYVVQYVVELDNQHETDLLVNKLLRNYAHLARNKYGSHVVQKLLKLRGIDSK-LIVVDLL 470
Query: 514 GHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQPHN 569
+ + D GN+VIQ + + + + + + +G ++++ N
Sbjct: 471 RGIDTLLLDPFGNYVIQTAWFVSKEDVRQMLRYYIERNIRLMRCNKFGNKILEKLN 526
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/205 (19%), Positives = 78/205 (38%), Gaps = 45/205 (21%)
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVF--------------- 452
I E VD G+ ++ + CS+E+ + + V H SK + F
Sbjct: 249 ICELMVDPFGNDVVKLLIGKCSSEQIILIVDVVTRHISKFVNICFNPIGTLAIQVLLTSI 308
Query: 453 ---------------------------GNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSL 485
YVI F + Q + L E + +++
Sbjct: 309 HERANNQIPRIMDAISSVALQLTRNTNAKYVILACFRMFTSSQCRRLLEVVSQHCYQIAI 368
Query: 486 QMYGCRVIQKAL--EVIELHQ-KSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIE 542
GC ++Q+ E + H+ + +L+ E+ H ++ + +GN+V+Q +E + +
Sbjct: 369 DQNGCCLLQQCFDKERVPNHEIRQRLISEVIEHALKLCLNCHGNYVVQYVVELDNQHETD 428
Query: 543 FIISAFRGQVATLSTHPYGCRVIQP 567
+++ A L+ + YG V+Q
Sbjct: 429 LLVNKLLRNYAHLARNKYGSHVVQK 453
Score = 36.2 bits (82), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 387 FLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASK 446
++ EL + + ++ + + +++GS +Q+ L+ + K+ V ++L
Sbjct: 417 YVVELDNQHETDLLVNKLLRNYAHLARNKYGSHVVQKLLKLRGIDSKLIVV-DLLRGIDT 475
Query: 447 LMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQK 495
L+ D FGNYVIQ + D R+ L + + + +G ++++K
Sbjct: 476 LLLDPFGNYVIQTAWFVSKEDVRQMLRYYIERNIRLMRCNKFGNKILEK 524
>sp|O60059|YG58_SCHPO Pumilio domain-containing protein C56F2.08c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC56F2.08c PE=1
SV=1
Length = 661
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 2/137 (1%)
Query: 431 EEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGC 490
EE + + +L ++L +D GN V+QKFFE+ S ++ + E++ + + + G
Sbjct: 183 EEIEVIARSMLDDVAELSSDYLGNTVVQKFFEYCSDPIKEAMLERIAPYLAAIGIHKNGT 242
Query: 491 RVIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFR 549
QK ++V ++ L+++ L + DQ GN+V Q C+ K F+
Sbjct: 243 WAAQKIIDVASTEKQMDLIVKHLRPYTALLYFDQFGNYVAQCCLR-FKYPKNTFLFEVMA 301
Query: 550 GQVATLSTHPYGCRVIQ 566
+ +G R I+
Sbjct: 302 RHCCEIGQSRFGARAIR 318
>sp|Q9XI17|PUM20_ARATH Putative pumilio homolog 20 OS=Arabidopsis thaliana GN=APUM20 PE=5
SV=2
Length = 332
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 392 KSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDV 451
K+ + + I R + D++ S +++ + ++K ++++ +L +AS + D
Sbjct: 113 KTDDVDALFAAAILRRFLHIITDKYASYVVRRGMTVFDKKKKKAMYEHILHYASHIARDK 172
Query: 452 FGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE 511
GN + R +L + + + L LS YG VIQ+ L++ +L K+ +V+
Sbjct: 173 HGNLALNDIITDA---YRNKLFDVIAHKALVLSNDAYGNFVIQRVLKLNDLRSKNNIVVS 229
Query: 512 LDGHVMRCVRDQNGNHVIQKCIE 534
L GH + + G++V+ +E
Sbjct: 230 LRGHFVDLSFQKYGSYVVDVLLE 252
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 439 EVLPHASKLMT-DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL 497
+V+ H + +++ D +GN+VIQ+ + + + L G + LS Q YG V+ L
Sbjct: 192 DVIAHKALVLSNDAYGNFVIQRVLKLNDLRSKNNIVVSLRGHFVDLSFQKYGSYVVDVLL 251
Query: 498 EVIE-LHQKSQLVLELDGH-VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555
E E + + ++E +G +MR R++ GN ++ K + E + F G V L
Sbjct: 252 ETKESMVVVVEELMECEGDMLMRLARNEYGNFLVCKALRVTQKEMVR--TDLFWGLVHKL 309
>sp|Q4PSD1|PUM14_ARATH Pumilio homolog 14 OS=Arabidopsis thaliana GN=APUM14 PE=2 SV=1
Length = 518
Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 410 EFSVDQHGSRFIQQKLEHCSAEEKV-------SVFKEVLPHASKLMTDVFGNYVIQKFFE 462
+ ++DQHG +Q C +++V + E + +A +L + +GNYV+Q E
Sbjct: 356 QIAIDQHGCCLLQL----CFNKDRVPNLEIRQRLIMEAIANALRLCLNCYGNYVVQYIVE 411
Query: 463 HGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRD 522
+ L +L+G L+ YG +QK L++ + + +V++L + + D
Sbjct: 412 LNNRYLIDALVRQLIGNYAHLARNKYGSHAVQKLLKLRWIDSRV-IVIDLLREIDTLLLD 470
Query: 523 QNGNHVIQ 530
GN+VIQ
Sbjct: 471 PFGNYVIQ 478
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 427 HCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHG---SPDQRKELAEKLVGQVLPL 483
HC + + ++ + ++ D G ++Q F + + R+ L + + L L
Sbjct: 342 HCRL-----LLELIVQNCHQIAIDQHGCCLLQLCFNKDRVPNLEIRQRLIMEAIANALRL 396
Query: 484 SLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEF 543
L YG V+Q +E+ + LV +L G+ R++ G+H +QK ++ +
Sbjct: 397 CLNCYGNYVVQYIVELNNRYLIDALVRQLIGNYAHLARNKYGSHAVQKLLKLRWIDSRVI 456
Query: 544 IISAFRGQVATLSTHPYGCRVIQP 567
+I R ++ TL P+G VIQ
Sbjct: 457 VIDLLR-EIDTLLLDPFGNYVIQT 479
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 17/189 (8%)
Query: 392 KSSNAQKFELSDIAGR----IVEFSVDQHGSRFIQQKLEHCSAEEK------VSVFKEVL 441
+ S+ Q +L DI + V +D G+ IQ L + K V V + V
Sbjct: 260 RCSSEQIVQLVDIVTQQMFQFVNICIDSLGTNAIQVLLTCINERAKDQIPRIVDVVRTVA 319
Query: 442 PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL---E 498
SK +F + F P + L E +V +++ +GC ++Q
Sbjct: 320 LQLSKSNHAIFVILACFRLF----PLHCRLLLELIVQNCHQIAIDQHGCCLLQLCFNKDR 375
Query: 499 VIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTH 558
V L + +L++E + +R + GN+V+Q +E I+ ++ G A L+ +
Sbjct: 376 VPNLEIRQRLIMEAIANALRLCLNCYGNYVVQYIVELNNRYLIDALVRQLIGNYAHLARN 435
Query: 559 PYGCRVIQP 567
YG +Q
Sbjct: 436 KYGSHAVQK 444
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 387 FLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASK 446
++ EL + + + G + +++GS +Q+ L+ + +V V ++L
Sbjct: 408 YIVELNNRYLIDALVRQLIGNYAHLARNKYGSHAVQKLLKLRWIDSRVIVI-DLLREIDT 466
Query: 447 LMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQK 495
L+ D FGNYVIQ + D R+ L + + + +G +V++K
Sbjct: 467 LLLDPFGNYVIQTAWFVSKDDVRRMLRYHIERNIPMMRCNKFGNKVLEK 515
>sp|Q9LRZ3|PUM24_ARATH Pumilio homolog 24 OS=Arabidopsis thaliana GN=APUM24 PE=2 SV=1
Length = 641
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%)
Query: 401 LSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKF 460
+ + G++ E +V SR +Q ++ CS EK +F E+ P L ++ + + IQK
Sbjct: 116 IRKMKGKVPEIAVSHVSSRVLQTCVKFCSQAEKDVLFTELQPQFLNLASNKYAVHFIQKM 175
Query: 461 FEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLEL 512
+ S Q L G V PL ++G V++ A + QK +L+ EL
Sbjct: 176 LDGASKQQLAACISSLRGHVAPLLRHVFGSLVVEHAYHLGSAAQKQELLAEL 227
Score = 42.0 bits (97), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 464 GSPDQRKELAE---KLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCV 520
G D+ K ++E K+ G+V +++ RV+Q ++ +K L EL +
Sbjct: 104 GKEDRSKLISEAIRKMKGKVPEIAVSHVSSRVLQTCVKFCSQAEKDVLFTELQPQFLNLA 163
Query: 521 RDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
++ H IQK ++ +++ IS+ RG VA L H +G V++
Sbjct: 164 SNKYAVHFIQKMLDGASKQQLAACISSLRGHVAPLLRHVFGSLVVE 209
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 394 SNAQKFEL-SDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVF 452
S A+K L +++ + + + +++ FIQ+ L+ S ++ + + H + L+ VF
Sbjct: 144 SQAEKDVLFTELQPQFLNLASNKYAVHFIQKMLDGASKQQLAACISSLRGHVAPLLRHVF 203
Query: 453 GNYVIQKFFEHGSPDQRKELAEKLVGQVLPL 483
G+ V++ + GS Q++EL +L L L
Sbjct: 204 GSLVVEHAYHLGSAAQKQELLAELYSTELQL 234
>sp|Q9C8B8|PUM17_ARATH Putative pumilio homolog 17 OS=Arabidopsis thaliana GN=APUM17 PE=5
SV=2
Length = 332
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 79/166 (47%), Gaps = 19/166 (11%)
Query: 374 EGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEK 433
+G R F+ K+ EL + ++ L + DQ+G + + ++
Sbjct: 137 QGMRIFKQDKR-----ELMYDHILRYALF--------LARDQYGCIALNEIIKELDDPYY 183
Query: 434 VSVFKEVLPHASKLMT-DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRV 492
+++ + + L++ D +GN+V+Q + +A+KL G + LS + YG +
Sbjct: 184 RDELMDIVSNNALLLSNDAYGNFVVQHVLKLHDSRCTGNIADKLCGYCVELSFKKYGSYI 243
Query: 493 IQKALEVIELHQKSQLVLELDG----HVMRCVRDQNGNHVIQKCIE 534
+++ LEV ++ + +VL+L ++R R +NGN V+ K +E
Sbjct: 244 VERLLEVRDIPMAT-IVLDLLACKTEMLIRLARSENGNFVVCKLLE 288
Score = 36.2 bits (82), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 70/154 (45%), Gaps = 2/154 (1%)
Query: 414 DQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELA 473
+++GS+ +Q KL S + V F ++ +M D + +YV + D+R+ +
Sbjct: 93 NKNGSKSLQ-KLMRMSDDMDVFFFVAIMRLFIHVMIDKYASYVAIQGMRIFKQDKRELMY 151
Query: 474 EKLVGQVLPLSLQMYGCRVIQKAL-EVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKC 532
+ ++ L L+ YGC + + + E+ + + + +L+ + + + D GN V+Q
Sbjct: 152 DHILRYALFLARDQYGCIALNEIIKELDDPYYRDELMDIVSNNALLLSNDAYGNFVVQHV 211
Query: 533 IECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
++ + I G LS YG +++
Sbjct: 212 LKLHDSRCTGNIADKLCGYCVELSFKKYGSYIVE 245
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/143 (19%), Positives = 62/143 (43%), Gaps = 1/143 (0%)
Query: 393 SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVF 452
S + F I + +D++ S Q + +++ ++ +L +A L D +
Sbjct: 107 SDDMDVFFFVAIMRLFIHVMIDKYASYVAIQGMRIFKQDKRELMYDHILRYALFLARDQY 166
Query: 453 GNYVIQKFF-EHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE 511
G + + E P R EL + + L LS YG V+Q L++ + + +
Sbjct: 167 GCIALNEIIKELDDPYYRDELMDIVSNNALLLSNDAYGNFVVQHVLKLHDSRCTGNIADK 226
Query: 512 LDGHVMRCVRDQNGNHVIQKCIE 534
L G+ + + G++++++ +E
Sbjct: 227 LCGYCVELSFKKYGSYIVERLLE 249
>sp|Q9LVG3|PUM18_ARATH Pumilio homolog 18 OS=Arabidopsis thaliana GN=APUM18 PE=2 SV=1
Length = 327
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 82/191 (42%), Gaps = 14/191 (7%)
Query: 386 SFLEELKSSNAQKFELSDIAGRI-------VEFSVDQHGSRFIQQKLEHCSAEEKVSVF- 437
S+ +E+ SN+ K EL +A + + + GSR +Q+ L + V F
Sbjct: 56 SYFKEM-ISNSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLL---GKSDDVDAFF 111
Query: 438 -KEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKA 496
+L + TD + +YV + +K L E+++ L L+ +GC +
Sbjct: 112 CAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHGCIALNDI 171
Query: 497 L-EVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555
+ + + + + QL+ + + +R D +GN V+Q + + I I GQ L
Sbjct: 172 ITDADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYDSRCIHNIAVNLYGQCIEL 231
Query: 556 STHPYGCRVIQ 566
S YG +++
Sbjct: 232 SFKKYGSYIVE 242
Score = 39.3 bits (90), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 11/152 (7%)
Query: 409 VEFSVDQHGSRFIQQKLEHCSAEE---KVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGS 465
++ + DQHG + + A++ + + + V +A +L D GN+V+Q
Sbjct: 156 LDLACDQHGCIALNDIIT--DADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYD 213
Query: 466 PDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-LDG-HVMRCVRDQ 523
+A L GQ + LS + YG +++K LEV E + L DG +MR R++
Sbjct: 214 SRCIHNIAVNLYGQCIELSFKKYGSYIVEKLLEVEESMVVVVVELLGCDGDRLMRLARNE 273
Query: 524 NGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555
GN V+ K + +++ F G V L
Sbjct: 274 FGNFVVVKALRFTKMSRMDL----FWGLVQKL 301
>sp|Q9LXC5|PUM21_ARATH Putative pumilio homolog 21 OS=Arabidopsis thaliana GN=APUM21 PE=3
SV=1
Length = 517
Score = 45.8 bits (107), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 436 VFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQK 495
+F+ V +A L D +G +V+Q +P +AE+L G L+++ G V++K
Sbjct: 362 IFECVANNADWLSFDPYGTHVVQNILILQNPVATTAIAERLRGSFFRLAMERQGSYVVEK 421
Query: 496 ALEVIELHQKSQLVLELDGHVMRCVR---DQNGNHVIQKCIECVPAEKIEFIISAF 548
L+ + Q++ E G+ VR D+ GN V+Q + + +++ ++ F
Sbjct: 422 CLK--SDFARDQVLEEFRGNAKEWVRMTTDKFGNFVVQSALRVMKEKEMRPLLREF 475
>sp|Q12221|PUF2_YEAST mRNA-binding protein PUF2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PUF2 PE=1 SV=1
Length = 1075
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 7/150 (4%)
Query: 419 RFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVG 478
+F L E+ V + LP +L +D GN VIQK FE+ S R + K
Sbjct: 559 QFDSNSLSTIEMEQLAIVMLDQLP---ELSSDYLGNTVIQKLFENSSNIIRDIMLRKCNK 615
Query: 479 QVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-LDGHVMRCVRDQNGNHVIQKCIEC-V 536
+ + + G V QK +++ ++ LV + + DQ GN+VIQ ++
Sbjct: 616 YLTSMGVHKNGTWVCQKIIKMANTPRQINLVTSGVSDYCTPLFNDQFGNYVIQGILKFGF 675
Query: 537 PAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
P FI + T+ + YG R ++
Sbjct: 676 PWN--SFIFESVLSHFWTIVQNRYGSRAVR 703
>sp|Q9FIE9|PUM16_ARATH Putative pumilio homolog 16 OS=Arabidopsis thaliana GN=APUM16 PE=3
SV=2
Length = 332
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 372 TFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAE 431
T +G R F+ K+ EL ++ +AG DQ+G + + +
Sbjct: 135 TIQGMRVFQQDKR-----ELMYDQILRYACF-LAG-------DQYGCIALNEIITDLDDP 181
Query: 432 EKVSVFKEVLPHASKLMT-DVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGC 490
+++ + + L++ D +GN+V+Q + + +A+KL G + LS + YG
Sbjct: 182 YYRDQLLDIVANNALLLSNDAYGNFVVQHVLKLRDSRCTRNIADKLCGYCVELSFKKYGS 241
Query: 491 RVIQKALEVIELHQKSQLVLELDG----HVMRCVRDQNGNHVIQKCIE 534
++++ LE ++ + +VL+L ++R R + GN V+ K +E
Sbjct: 242 YIVERLLEAGDVPMAT-VVLDLLACKTEMLIRLARSEYGNFVVCKALE 288
Score = 40.8 bits (94), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/205 (18%), Positives = 89/205 (43%), Gaps = 11/205 (5%)
Query: 363 IYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQ 422
I++ G + + D+ ++ L +S+ F + + +++GS+ +Q
Sbjct: 51 IFNFMTGSEDLKDDISVLDTGTLMWMASLMTSDCDYFMV---------ITTNKNGSKTLQ 101
Query: 423 QKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLP 482
KL S + V F+ ++ +MTD + +YV + D+R+ + ++++
Sbjct: 102 -KLMGMSDDMDVFFFEAIMRLFIHVMTDKYASYVTIQGMRVFQQDKRELMYDQILRYACF 160
Query: 483 LSLQMYGCRVIQKAL-EVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKI 541
L+ YGC + + + ++ + + + QL+ + + + D GN V+Q ++ +
Sbjct: 161 LAGDQYGCIALNEIITDLDDPYYRDQLLDIVANNALLLSNDAYGNFVVQHVLKLRDSRCT 220
Query: 542 EFIISAFRGQVATLSTHPYGCRVIQ 566
I G LS YG +++
Sbjct: 221 RNIADKLCGYCVELSFKKYGSYIVE 245
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/185 (18%), Positives = 79/185 (42%), Gaps = 8/185 (4%)
Query: 393 SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVF 452
S + F I + D++ S Q + +++ ++ ++L +A L D +
Sbjct: 107 SDDMDVFFFEAIMRLFIHVMTDKYASYVTIQGMRVFQQDKRELMYDQILRYACFLAGDQY 166
Query: 453 GNYVIQKFF-EHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE 511
G + + + P R +L + + L LS YG V+Q L++ + + +
Sbjct: 167 GCIALNEIITDLDDPYYRDQLLDIVANNALLLSNDAYGNFVVQHVLKLRDSRCTRNIADK 226
Query: 512 LDGHVMRCVRDQNGNHVIQKCIEC--VPAEKIEFIISAFRGQVAT-LSTHPYG----CRV 564
L G+ + + G++++++ +E VP + + A + ++ L+ YG C+
Sbjct: 227 LCGYCVELSFKKYGSYIVERLLEAGDVPMATVVLDLLACKTEMLIRLARSEYGNFVVCKA 286
Query: 565 IQPHN 569
++ N
Sbjct: 287 LELTN 291
>sp|P47135|JSN1_YEAST Protein JSN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=JSN1 PE=1 SV=1
Length = 1091
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 2/128 (1%)
Query: 440 VLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEV 499
+L +L +D GN ++QK FEH S + + K + + + G QK + +
Sbjct: 618 MLDELPELSSDYLGNTIVQKLFEHSSDIIKDIMLRKTSKYLTSMGVHKNGTWACQKMITM 677
Query: 500 IEL-HQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTH 558
Q Q+ + + + DQ GN+VIQ C+ +FI + + +
Sbjct: 678 AHTPRQIMQVTQGVKDYCTPLINDQFGNYVIQ-CVLKFGFPWNQFIFESIIANFWVIVQN 736
Query: 559 PYGCRVIQ 566
YG R ++
Sbjct: 737 RYGARAVR 744
Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 388 LEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKV-SVFKEVLPHASK 446
L E S + L + + V ++G+ Q+ + ++ V + V + +
Sbjct: 638 LFEHSSDIIKDIMLRKTSKYLTSMGVHKNGTWACQKMITMAHTPRQIMQVTQGVKDYCTP 697
Query: 447 LMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALE 498
L+ D FGNYVIQ + G P + + E ++ + YG R ++ LE
Sbjct: 698 LINDQFGNYVIQCVLKFGFP-WNQFIFESIIANFWVIVQNRYGARAVRACLE 748
>sp|Q9LSS8|PUM19_ARATH Putative pumilio homolog 19 OS=Arabidopsis thaliana GN=APUM19 PE=3
SV=2
Length = 327
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 6/155 (3%)
Query: 415 QHGSRFIQQKLEHCSAEEKVSVF--KEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKEL 472
+ GSR +Q+ L + V F +L + TD + +YV + +K L
Sbjct: 91 KFGSRRVQKLL---GKSDDVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKAL 147
Query: 473 AEKLVGQVLPLSLQMYGCRVIQKAL-EVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQK 531
E+++ L L+ +GC + + + + + + QL+ + + +R D +GN V+Q
Sbjct: 148 YERILYHALDLACDQHGCIALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQH 207
Query: 532 CIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566
+ + I I GQ LS YG +++
Sbjct: 208 VLTLYDSRCIHNIAVNLYGQCIELSFKKYGSYIVE 242
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 11/152 (7%)
Query: 409 VEFSVDQHGSRFIQQKLEHCSAEE---KVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGS 465
++ + DQHG + + A++ + + + V+ +A +L D GN+V+Q
Sbjct: 156 LDLACDQHGCIALNDIIT--DADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYD 213
Query: 466 PDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLE-LDG-HVMRCVRDQ 523
+A L GQ + LS + YG +++K LEV E + L DG +MR R++
Sbjct: 214 SRCIHNIAVNLYGQCIELSFKKYGSYIVEKLLEVEESMVVVVVELLGCDGDRLMRLARNE 273
Query: 524 NGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555
GN V+ K + +++ F G V L
Sbjct: 274 FGNFVVVKALRFTKEMRMDL----FWGLVQKL 301
>sp|O61345|PEN_DROME Protein penguin OS=Drosophila melanogaster GN=pen PE=2 SV=1
Length = 737
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/156 (19%), Positives = 71/156 (45%), Gaps = 9/156 (5%)
Query: 378 TFEDSKK----HSFLEELKSSNAQK-----FELSDIAGRIVEFSVDQHGSRFIQQKLEHC 428
T+E SK+ H L ++ N K +++ ++ I + +R IQ L++
Sbjct: 133 TYEISKEANQIHEKLRCRRTENKDKLVEQIYKVLNVGDTISKVVKAHDTARVIQSMLKYA 192
Query: 429 SAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMY 488
S + + +++LP ++ + + +Q+ ++G+P + +L + L G ++ L+
Sbjct: 193 SPALRAEISEKLLPFTVEMCQSKYAQFCVQRMLKYGAPATKAKLVDSLYGHIVRLAGHSI 252
Query: 489 GCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQN 524
G ++ + +Q+ + E G + R +D N
Sbjct: 253 GSGLLDSMYQSATPNQRIYMRQEFYGDLYRKAKDSN 288
>sp|Q8BKS9|K0020_MOUSE Pumilio domain-containing protein KIAA0020 OS=Mus musculus
GN=Kiaa0020 PE=2 SV=2
Length = 647
Score = 41.2 bits (95), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 428 CSAEEKVSVFKEVLPHAS-KLMTDVFGN---YVIQKFFEHGSPDQRKELAEKLVGQVLPL 483
C E++V + ++ K+ T F + VIQ F ++G+ +QRK+ ++L G ++ L
Sbjct: 149 CDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCFIQYGNEEQRKQAFQELQGDLVEL 208
Query: 484 SLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQ 530
S Y +++K L Q ++++ GHV + +R + +++
Sbjct: 209 SKAKYSRNIVKKFLMYGSKPQVAEIIRSFKGHVRKMLRHSEASAIVE 255
Score = 38.1 bits (87), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 10/163 (6%)
Query: 394 SNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFG 453
S+ QK I G+I + +R IQ +++ + E++ F+E+ +L +
Sbjct: 159 SDLQKL----IQGKIKTIAFAHDSTRVIQCFIQYGNEEQRKQAFQELQGDLVELSKAKYS 214
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL-EVIELHQKSQLVLEL 512
+++KF +GS Q E+ G V + +++ A + L Q++ L EL
Sbjct: 215 RNIVKKFLMYGSKPQVAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEEL 274
Query: 513 DGHVMRCVRDQNGNH-VIQKCIECVPAEKIEFIISAFRGQVAT 554
G+ + + + +H + K +E PA K+E I+ + Q+ T
Sbjct: 275 YGNTFQLYK--SADHPTLDKVLELQPA-KLELIMDEMK-QILT 313
>sp|Q562C7|K0020_RAT Pumilio domain-containing protein KIAA0020 homolog OS=Rattus
norvegicus PE=2 SV=1
Length = 647
Score = 40.0 bits (92), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 428 CSAEEKVSVFKEVLPHAS-KLMTDVFGN---YVIQKFFEHGSPDQRKELAEKLVGQVLPL 483
C E++V + ++ K+ T F + VIQ ++GS +QRK E+L G ++ L
Sbjct: 149 CDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCLIQYGSEEQRKWAFEELQGDLVEL 208
Query: 484 SLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQ 530
S Y +++K L Q ++++ GHV + +R + +++
Sbjct: 209 SKAKYSRNIVKKFLMYGSKPQIAEIIRSFKGHVRKMLRHSEASAIVE 255
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 10/163 (6%)
Query: 394 SNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFG 453
S+ QK I G+I + +R IQ +++ S E++ F+E+ +L +
Sbjct: 159 SDLQKL----IQGKIKTIAFAHDSTRVIQCLIQYGSEEQRKWAFEELQGDLVELSKAKYS 214
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL-EVIELHQKSQLVLEL 512
+++KF +GS Q E+ G V + +++ A + L Q++ L EL
Sbjct: 215 RNIVKKFLMYGSKPQIAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEEL 274
Query: 513 DGHVMRCVRDQNGNH-VIQKCIECVPAEKIEFIISAFRGQVAT 554
G+ + + + +H ++K +E P K+E I+ + Q+ T
Sbjct: 275 YGNTFQLYK--SADHPTLEKVLEVQPG-KLELILDEMK-QILT 313
>sp|Q15397|K0020_HUMAN Pumilio domain-containing protein KIAA0020 OS=Homo sapiens
GN=KIAA0020 PE=1 SV=3
Length = 648
Score = 39.3 bits (90), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 74/162 (45%), Gaps = 8/162 (4%)
Query: 394 SNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFG 453
S+ QK I G+I + +R IQ +++ + E++ F+E+ +L +
Sbjct: 160 SDLQKL----IQGKIKTIAFAHDSTRVIQCYIQYGNEEQRKQAFEELRDDLVELSKAKYS 215
Query: 454 NYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL-EVIELHQKSQLVLEL 512
+++KF +GS Q E+ G V + +++ A + L Q++ L EL
Sbjct: 216 RNIVKKFLMYGSKPQIAEIIRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEEL 275
Query: 513 DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVAT 554
G+ + + + + + K +E P EK+E I+ + Q+ T
Sbjct: 276 YGNTFQLYKSAD-HRTLDKVLEVQP-EKLELIMDEMK-QILT 314
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 428 CSAEEKVSVFKEVLPHAS-KLMTDVFGN---YVIQKFFEHGSPDQRKELAEKLVGQVLPL 483
C E++V + ++ K+ T F + VIQ + ++G+ +QRK+ E+L ++ L
Sbjct: 150 CDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCYIQYGNEEQRKQAFEELRDDLVEL 209
Query: 484 SLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQ 530
S Y +++K L Q ++++ GHV + +R + +++
Sbjct: 210 SKAKYSRNIVKKFLMYGSKPQIAEIIRSFKGHVRKMLRHAEASAIVE 256
>sp|Q04373|PUF6_YEAST Pumilio homology domain family member 6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PUF6 PE=1 SV=1
Length = 656
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 1/128 (0%)
Query: 408 IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPD 467
I + + SR +Q +++ S + + + + L T +G Y++ K +GS
Sbjct: 161 ISDLVLKHDASRIVQTLVKYSSKDRREQIVDALKGKFYVLATSAYGKYLLVKLLHYGSRS 220
Query: 468 QRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELH-QKSQLVLELDGHVMRCVRDQNGN 526
R+ + +L G + L G V++ + H Q+ Q++ E G R+ + +
Sbjct: 221 SRQTIINELHGSLRKLMRHREGAYVVEDLFVLYATHEQRQQMIKEFWGSEYAVFRETHKD 280
Query: 527 HVIQKCIE 534
I+K E
Sbjct: 281 LTIEKVCE 288
>sp|Q9UKN7|MYO15_HUMAN Unconventional myosin-XV OS=Homo sapiens GN=MYO15A PE=1 SV=2
Length = 3530
Score = 36.2 bits (82), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 432 EKVSVFKEVL-----PHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQV 480
E VS+FK +L PH ++FGNY++QK P+ R E+ +L QV
Sbjct: 2084 EAVSIFKLILRFMGDPHLHGARENIFGNYIVQKGL--AVPELRDEILAQLANQV 2135
>sp|Q9UU76|PUF6_SCHPO Pumilio homology domain family member 6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=puf6 PE=1 SV=1
Length = 642
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 67/146 (45%), Gaps = 3/146 (2%)
Query: 389 EELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLM 448
EE K+ A+ F+L I + + SR +Q ++ S +++ ++ E+ L
Sbjct: 149 EERKTIIAELFDL--IRTNVKQLVFKHDMSRVVQTCVKFGSKQQRETICAELAGSYVDLC 206
Query: 449 TDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKAL-EVIELHQKSQ 507
+G Y+ K F++G+P ++ + ++ G V+ + V++ A E L Q+
Sbjct: 207 KSPYGKYLAIKIFKYGTPKMKEVILGEMYGNVVKMIRHREAAYVVEDAFREFTNLQQQRA 266
Query: 508 LVLELDGHVMRCVRDQNGNHVIQKCI 533
L+ E G + +D+ + I K +
Sbjct: 267 LICEFYGPEFQVFKDRTQDIHIDKLL 292
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 225,066,949
Number of Sequences: 539616
Number of extensions: 10233537
Number of successful extensions: 27456
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 26887
Number of HSP's gapped (non-prelim): 389
length of query: 575
length of database: 191,569,459
effective HSP length: 123
effective length of query: 452
effective length of database: 125,196,691
effective search space: 56588904332
effective search space used: 56588904332
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)