Query 008180
Match_columns 575
No_of_seqs 247 out of 1303
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 20:03:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gvo_A Pumilio 2, pumilio homo 100.0 7.1E-40 2.4E-44 338.7 11.5 191 383-573 3-193 (351)
2 3k49_A MRNA-binding protein PU 100.0 8.1E-40 2.8E-44 340.3 12.0 191 383-573 3-198 (369)
3 3k62_A FEM-3 mRNA-binding fact 100.0 1.2E-37 4E-42 331.2 15.4 192 363-574 4-212 (412)
4 3gvo_A Pumilio 2, pumilio homo 100.0 3.2E-37 1.1E-41 318.8 14.1 195 379-573 68-265 (351)
5 3bwt_A Protein PUF4; pumilio, 100.0 1.4E-36 4.7E-41 310.5 14.4 175 399-573 6-181 (333)
6 3v71_A PUF (pumilio/FBF) domai 100.0 1.1E-35 3.7E-40 312.7 13.7 177 398-574 10-196 (382)
7 3bwt_A Protein PUF4; pumilio, 100.0 1.4E-34 4.9E-39 295.6 17.5 196 377-572 53-256 (333)
8 3k49_A MRNA-binding protein PU 100.0 3.7E-35 1.3E-39 305.3 12.1 195 379-573 73-276 (369)
9 3k62_A FEM-3 mRNA-binding fact 100.0 2.9E-34 9.8E-39 305.2 16.0 197 377-573 73-301 (412)
10 3v71_A PUF (pumilio/FBF) domai 100.0 1.3E-33 4.4E-38 297.0 11.2 197 377-573 64-281 (382)
11 2yvy_A MGTE, Mg2+ transporter 73.4 17 0.0006 35.3 10.1 19 424-442 39-57 (278)
12 2ilr_A Protein FACE, fanconi a 57.4 99 0.0034 31.2 12.0 66 488-557 143-213 (264)
13 3u0r_A Apoptosis inhibitor 5; 54.6 2.2E+02 0.0076 31.2 14.9 157 408-568 89-265 (507)
14 2xes_A Protein PAT1 homolog 1; 52.9 37 0.0013 33.7 8.1 93 443-535 72-176 (248)
15 3tpo_A Importin subunit alpha- 47.5 2.5E+02 0.0087 29.4 14.1 17 417-433 294-310 (529)
16 1k1a_A B-cell lymphoma 3-encod 46.9 44 0.0015 30.1 7.0 125 414-546 43-171 (241)
17 2zy9_A Mg2+ transporter MGTE; 44.4 11 0.00038 40.2 2.9 68 422-513 57-124 (473)
18 2xes_A Protein PAT1 homolog 1; 41.0 1E+02 0.0034 30.7 9.0 95 406-500 71-177 (248)
19 2rfa_A Transient receptor pote 37.8 76 0.0026 28.5 7.1 127 414-547 72-219 (232)
20 3mhs_B Protein SUS1; multi-pro 36.5 1.1E+02 0.0036 26.3 7.3 64 457-520 30-93 (96)
21 2npp_B PP2A, B subunit, serine 33.7 4.7E+02 0.016 28.0 13.4 46 493-539 308-353 (449)
22 4fhr_B Flagellar motor switch 33.5 1.1E+02 0.0039 29.5 7.9 49 465-513 58-110 (216)
23 2oux_A Magnesium transporter; 31.6 1.2E+02 0.0042 29.5 8.0 18 424-441 42-59 (286)
24 2fv2_A RCD1 required for cell 31.0 2.3E+02 0.0078 28.6 9.7 47 452-499 164-218 (268)
25 2yvy_A MGTE, Mg2+ transporter 30.9 1.1E+02 0.0038 29.5 7.5 18 459-476 86-103 (278)
26 2fv2_A RCD1 required for cell 30.5 2.4E+02 0.0083 28.5 9.8 47 488-535 164-218 (268)
27 3hjl_A Flagellar motor switch 30.0 4.7E+02 0.016 26.8 13.3 169 377-555 87-289 (329)
28 3ul1_B Importin subunit alpha- 29.7 5E+02 0.017 27.0 13.8 173 399-572 228-425 (510)
29 3fga_B Serine/threonine-protei 29.7 5.3E+02 0.018 27.3 15.2 72 493-565 275-354 (403)
30 3v31_A Ankyrin repeat family A 27.5 1.9E+02 0.0066 24.4 7.7 125 413-547 32-157 (167)
31 1awc_B Protein (GA binding pro 26.8 55 0.0019 27.7 4.0 20 449-468 30-49 (153)
32 1n0r_A 4ANK, 4 ankyrin repeats 26.8 1.8E+02 0.0062 22.8 7.0 90 449-545 31-121 (126)
33 3jxi_A Vanilloid receptor-rela 26.3 3.6E+02 0.012 24.4 9.9 128 416-547 92-247 (260)
34 2jab_A H10-2-G3; HER2, darpin, 26.3 1.4E+02 0.0049 24.6 6.5 89 449-544 43-132 (136)
35 2pnn_A Transient receptor pote 25.8 3.7E+02 0.013 24.8 9.9 129 414-546 98-254 (273)
36 3dad_A FH1/FH2 domain-containi 25.3 4.2E+02 0.014 27.5 10.8 70 380-454 116-194 (339)
37 3eu9_A Huntingtin-interacting 24.5 1.8E+02 0.0063 25.6 7.2 125 413-546 38-164 (240)
38 2zy9_A Mg2+ transporter MGTE; 24.4 1.2E+02 0.004 32.3 6.8 62 379-441 51-112 (473)
39 2dzn_A Probable 26S proteasome 22.2 2.3E+02 0.0078 25.0 7.4 129 413-546 32-161 (228)
40 1x5b_A Signal transducing adap 22.0 1.8E+02 0.006 26.8 6.6 30 492-521 75-105 (163)
41 3rjo_A Endoplasmic reticulum a 21.8 4.5E+02 0.015 27.0 10.5 115 380-501 266-388 (419)
42 3utm_A Tankyrase-1; tankyrase, 21.6 94 0.0032 29.4 4.9 25 449-473 87-111 (351)
43 2rfa_A Transient receptor pote 21.1 1.5E+02 0.0053 26.4 6.0 132 413-550 33-179 (232)
44 4dhx_B Enhancer of yellow 2 tr 21.1 3.5E+02 0.012 23.3 7.8 60 457-516 34-95 (101)
45 2f8y_A Notch homolog 1, transl 20.9 2.4E+02 0.0083 24.8 7.2 123 414-547 55-180 (223)
46 2y1l_E Darpin-8.4; hydrolase-i 20.0 1.9E+02 0.0065 24.7 6.2 121 413-544 43-165 (169)
No 1
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=7.1e-40 Score=338.66 Aligned_cols=191 Identities=61% Similarity=0.999 Sum_probs=186.6
Q ss_pred HHHHHHHHHhcchhhHhHHHHHHHHHHHHhhCccccHHHHHHhhcCCHHHHHHHHHHHhhhHHHhhcCccccHHHHHHhh
Q 008180 383 KKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFE 462 (575)
Q Consensus 383 ~rskLLeeL~s~e~rk~iLs~IkG~VveLA~Dq~GSRVLQkLLe~~s~Eer~~If~ELkp~iveLmtD~yGNyVVQKLfE 462 (575)
-|+.++|+|.+++.++++|++++|+++++|+||+|||+||++|+.+++++++.||+|+.+++.+||+|+||||||||+|+
T Consensus 3 ~~~~l~e~~r~~~~~~~~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle 82 (351)
T 3gvo_A 3 GRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFE 82 (351)
T ss_dssp CCCHHHHHHHTTCCTTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHH
T ss_pred CccHHHHHHhCCCCCCcCHHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHh
Confidence 36789999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhhcChhhhccCcchhHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHhCChhhHH
Q 008180 463 HGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIE 542 (575)
Q Consensus 463 ~gs~Eqr~~II~~L~g~I~~Ls~hkyGSrVVQKlLE~~s~eqr~~II~EL~g~l~~LvkDq~GNyVIQK~Le~~~~k~rk 542 (575)
+++++++..|++.+.+++.+|+.|+|||||||++|+.++.+++..|++||.+++..|++|++||||||+||++++++.++
T Consensus 83 ~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~ 162 (351)
T 3gvo_A 83 FGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQ 162 (351)
T ss_dssp HCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTH
T ss_pred hCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHhhcC
Q 008180 543 FIISAFRGQVATLSTHPYGCRVIQPHNNASG 573 (575)
Q Consensus 543 ~IIk~L~~~iveLSthkyGs~VVQK~Le~~d 573 (575)
+|++.|.+++.+|++|+|||+|||+||+++.
T Consensus 163 ~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~ 193 (351)
T 3gvo_A 163 FIIDAFKGQVFVLSTHPYGCRVIQRILEHCT 193 (351)
T ss_dssp HHHHHTTTTHHHHHTSTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHCC
Confidence 9999999999999999999999999999875
No 2
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=8.1e-40 Score=340.33 Aligned_cols=191 Identities=51% Similarity=0.822 Sum_probs=183.9
Q ss_pred HHHHHHHHHhcchh-----hHhHHHHHHHHHHHHhhCccccHHHHHHhhcCCHHHHHHHHHHHhhhHHHhhcCccccHHH
Q 008180 383 KKHSFLEELKSSNA-----QKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVI 457 (575)
Q Consensus 383 ~rskLLeeL~s~e~-----rk~iLs~IkG~VveLA~Dq~GSRVLQkLLe~~s~Eer~~If~ELkp~iveLmtD~yGNyVV 457 (575)
.|+.+||+|.++.. +++.+++++|++++||+||+|||+||++|+++++++++.||+||++++.+|++|+||||||
T Consensus 3 ~~s~lle~~~~~~~~~~~~~~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vv 82 (369)
T 3k49_A 3 HRSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVI 82 (369)
T ss_dssp --CHHHHHHHTTCC------CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHH
T ss_pred CcchhHHHHhCCCCccccccceeHHHHHHHHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHH
Confidence 58899999997753 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHhhcChhhhccCcchhHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHhCC
Q 008180 458 QKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVP 537 (575)
Q Consensus 458 QKLfE~gs~Eqr~~II~~L~g~I~~Ls~hkyGSrVVQKlLE~~s~eqr~~II~EL~g~l~~LvkDq~GNyVIQK~Le~~~ 537 (575)
||+|++++++++..|++.+.+++.+|+.|+|||||||+++++++.+++..|++||.+++..|++|++||||||+||+.++
T Consensus 83 Qkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~ 162 (369)
T 3k49_A 83 QKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIP 162 (369)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSC
T ss_pred HHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhcCcchHHHHHHHHhhcC
Q 008180 538 AEKIEFIISAFRGQVATLSTHPYGCRVIQPHNNASG 573 (575)
Q Consensus 538 ~k~rk~IIk~L~~~iveLSthkyGs~VVQK~Le~~d 573 (575)
++.+++|++.|.+++.+|++|+|||+|||+||+++.
T Consensus 163 ~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~ 198 (369)
T 3k49_A 163 IEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGS 198 (369)
T ss_dssp GGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCC
Confidence 999999999999999999999999999999999875
No 3
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=1.2e-37 Score=331.23 Aligned_cols=192 Identities=28% Similarity=0.557 Sum_probs=178.5
Q ss_pred CCCCcccccccCCCcccCchHHHHHHHHHhcchhhHhHHHHH--HHHHHHHhhCccccHHHHHHhhcC-CHHHHHHHHHH
Q 008180 363 IYSGWQGQRTFEGQRTFEDSKKHSFLEELKSSNAQKFELSDI--AGRIVEFSVDQHGSRFIQQKLEHC-SAEEKVSVFKE 439 (575)
Q Consensus 363 ~~~~We~~r~~~~~k~~~d~~rskLLeeL~s~e~rk~iLs~I--kG~VveLA~Dq~GSRVLQkLLe~~-s~Eer~~If~E 439 (575)
.++.|..++.++ +.+. +.|..+ +|++++||+||+|||+||++|+.+ ++++++.||+|
T Consensus 4 ~~~~w~~~~~~~----~~~~----------------~~L~~~~~~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~e 63 (412)
T 3k62_A 4 VLPTWSLDSNGE----MRSR----------------LSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQ 63 (412)
T ss_dssp -CCGGGBCTTSS----BCTT----------------CCHHHHHHHTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred cCccchhcccCC----CCCC----------------CcHHHHHhCCCcHHHhcCChhHHHHHHHhccCCCHHHHHHHHHH
Confidence 578899999888 3433 233444 699999999999999999999997 89999999999
Q ss_pred Hhhh---HHHhhcCccccHHHHHHhhcCCH-------HHHHHHHHHhhcChhhhccCcchhHHHHHHHHhcCHHHHHHHH
Q 008180 440 VLPH---ASKLMTDVFGNYVIQKFFEHGSP-------DQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLV 509 (575)
Q Consensus 440 Lkp~---iveLmtD~yGNyVVQKLfE~gs~-------Eqr~~II~~L~g~I~~Ls~hkyGSrVVQKlLE~~s~eqr~~II 509 (575)
|.++ +.+||+|+||||||||+|+++++ +++..|++.+.+++.+|+.|+|||||||++|+.++.+++..|+
T Consensus 64 l~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv 143 (412)
T 3k62_A 64 VIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLV 143 (412)
T ss_dssp HSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHhhhhHHHHHHhCcHHHHHHHHHHHhCCcccccccHHHHHHHHHHHHHHHHHHHcChhhhHHHHHHHHhCCHHHHHHHH
Confidence 9985 89999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHH--HHHHHHhhcCCchhHHHHHHHHhCChhhHHHHHHHHH--HHHHHHhcCcchHHHHHHHHhhcCC
Q 008180 510 LEL--DGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFR--GQVATLSTHPYGCRVIQPHNNASGF 574 (575)
Q Consensus 510 ~EL--~g~l~~LvkDq~GNyVIQK~Le~~~~k~rk~IIk~L~--~~iveLSthkyGs~VVQK~Le~~dd 574 (575)
++| .+++..|++|++|||||||||+.++++.+++|++.|. +++.+||+|+|||+|||+|||++.+
T Consensus 144 ~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~ 212 (412)
T 3k62_A 144 QALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTA 212 (412)
T ss_dssp HTSCCSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSC
T ss_pred HHHhccccHHHHHhCccccHHHHHHHHhCCHHHHHHHHHHHhcchhHHHHhcCcchHHHHHHHHHhcCc
Confidence 999 7899999999999999999999999999999999998 6999999999999999999999864
No 4
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=3.2e-37 Score=318.84 Aligned_cols=195 Identities=31% Similarity=0.426 Sum_probs=170.4
Q ss_pred cCchHHHHHHHHHh---cchhhHhHHHHHHHHHHHHhhCccccHHHHHHhhcCCHHHHHHHHHHHhhhHHHhhcCccccH
Q 008180 379 FEDSKKHSFLEELK---SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455 (575)
Q Consensus 379 ~~d~~rskLLeeL~---s~e~rk~iLs~IkG~VveLA~Dq~GSRVLQkLLe~~s~Eer~~If~ELkp~iveLmtD~yGNy 455 (575)
+.|++++.+++.+. +.+++..+++.+.|++++|+.|++||||||++|+.++.+++..|++|+.+++.+|++|+||||
T Consensus 68 ~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ 147 (351)
T 3gvo_A 68 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNH 147 (351)
T ss_dssp HTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHH
T ss_pred HhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhH
Confidence 44444444444433 334555666667777777777777777777777777777777788888888899999999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhcChhhhccCcchhHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHh
Q 008180 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIEC 535 (575)
Q Consensus 456 VVQKLfE~gs~Eqr~~II~~L~g~I~~Ls~hkyGSrVVQKlLE~~s~eqr~~II~EL~g~l~~LvkDq~GNyVIQK~Le~ 535 (575)
||||+|++++++++..|++.+.+++..|+.|+|||+|||++|+.++.+++..|+++|.+++..|++|++||||||+||++
T Consensus 148 ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~ 227 (351)
T 3gvo_A 148 VVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEH 227 (351)
T ss_dssp HHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHhcCcchHHHHHHHHhhcC
Q 008180 536 VPAEKIEFIISAFRGQVATLSTHPYGCRVIQPHNNASG 573 (575)
Q Consensus 536 ~~~k~rk~IIk~L~~~iveLSthkyGs~VVQK~Le~~d 573 (575)
++++.+++|++.|++++.+||+|+|||+||++||++++
T Consensus 228 ~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~ 265 (351)
T 3gvo_A 228 GRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHAS 265 (351)
T ss_dssp SCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSC
T ss_pred CchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999876
No 5
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=1.4e-36 Score=310.54 Aligned_cols=175 Identities=33% Similarity=0.511 Sum_probs=167.7
Q ss_pred hHHHHHHHHHHHHhhCccccHHHHHHhhcCCHHHHHHHHHHHhhhHHHhhcCccccHHHHHHhhcCCHHHHHHHHHHhhc
Q 008180 399 FELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVG 478 (575)
Q Consensus 399 ~iLs~IkG~VveLA~Dq~GSRVLQkLLe~~s~Eer~~If~ELkp~iveLmtD~yGNyVVQKLfE~gs~Eqr~~II~~L~g 478 (575)
.++++++|++++||+||+|||+||++|++++++++..||+|+.+++.+||+|+||||||||+|++++++++..|++.+.+
T Consensus 6 ~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~~ 85 (333)
T 3bwt_A 6 AVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSP 85 (333)
T ss_dssp CCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHGG
T ss_pred CcHHHHHHHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHHHh
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhccCcchhHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHhCChhhHHHHHHHHHHHHHHHhc
Q 008180 479 QVLPLSLQMYGCRVIQKALEVIE-LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLST 557 (575)
Q Consensus 479 ~I~~Ls~hkyGSrVVQKlLE~~s-~eqr~~II~EL~g~l~~LvkDq~GNyVIQK~Le~~~~k~rk~IIk~L~~~iveLSt 557 (575)
++.+|+.|+|||||||++++++. .+++..|+++|.+++..|++|++||||||+||+.++++.+++|++.|.+++.+|++
T Consensus 86 ~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~~~l~~ 165 (333)
T 3bwt_A 86 HFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIAT 165 (333)
T ss_dssp GHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSHHHHHT
T ss_pred HHHHHHhcccccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999985 55677789999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHhhcC
Q 008180 558 HPYGCRVIQPHNNASG 573 (575)
Q Consensus 558 hkyGs~VVQK~Le~~d 573 (575)
|+|||+|||+||+++.
T Consensus 166 ~~~Gs~Vvq~~l~~~~ 181 (333)
T 3bwt_A 166 HRHGCCVLQRCLDHGT 181 (333)
T ss_dssp STTHHHHHHHHHHHCC
T ss_pred CchhHHHHHHHHHhCC
Confidence 9999999999999874
No 6
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-35 Score=312.73 Aligned_cols=177 Identities=25% Similarity=0.480 Sum_probs=165.2
Q ss_pred HhHHHHH--HHHHHHHhhCccccHHHHHHhhcCCHH-HHHHHHHHHh---hhHHHhhcCccccHHHHHHhhcCCHHHHHH
Q 008180 398 KFELSDI--AGRIVEFSVDQHGSRFIQQKLEHCSAE-EKVSVFKEVL---PHASKLMTDVFGNYVIQKFFEHGSPDQRKE 471 (575)
Q Consensus 398 k~iLs~I--kG~VveLA~Dq~GSRVLQkLLe~~s~E-er~~If~ELk---p~iveLmtD~yGNyVVQKLfE~gs~Eqr~~ 471 (575)
.+.|.++ +|+++++|+||+|||+||++|+.++++ .+..||++|. +++.+||+|+||||||||+|++++++++..
T Consensus 10 ~~~L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~ 89 (382)
T 3v71_A 10 FISLEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRE 89 (382)
T ss_dssp -CCHHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHH
T ss_pred cCcHHHHhhCCCEehhccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHH
Confidence 3456677 699999999999999999999999865 4789999986 689999999999999999999999999999
Q ss_pred HHHH-hhcChhhhccCcchhHHHHHHHHhcCHHHHHHHHHHHHH-HHHHhhcCCchhHHHHHHHHhCChhhHHHHHHHHH
Q 008180 472 LAEK-LVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDG-HVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFR 549 (575)
Q Consensus 472 II~~-L~g~I~~Ls~hkyGSrVVQKlLE~~s~eqr~~II~EL~g-~l~~LvkDq~GNyVIQK~Le~~~~k~rk~IIk~L~ 549 (575)
|+.. +.+++..|+.|+|||||||++|++++.+++..|+++|.+ ++..|++|++|||||||||++.+++.+++|++.|.
T Consensus 90 li~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~~~ 169 (382)
T 3v71_A 90 LLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLS 169 (382)
T ss_dssp HHHHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHHHH
T ss_pred HHHHHhcchHHHHHhCccchHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcCcccccHHHHHHHHCCHHHHHHHHHHHh
Confidence 9987 589999999999999999999999999999999999998 89999999999999999999999999999999997
Q ss_pred --HHHHHHhcCcchHHHHHHHHhhcCC
Q 008180 550 --GQVATLSTHPYGCRVIQPHNNASGF 574 (575)
Q Consensus 550 --~~iveLSthkyGs~VVQK~Le~~dd 574 (575)
+++.+||+|+|||+|||+|||++..
T Consensus 170 ~~~~~~~la~h~~Gc~VlQ~~le~~~~ 196 (382)
T 3v71_A 170 SGDSLMAVCQDKYGCRLVQQVIDRLAE 196 (382)
T ss_dssp STTHHHHHHHSTTHHHHHHHHHHHHTC
T ss_pred cccchHhHhcCchhhHHHHHHHHhCCH
Confidence 6999999999999999999998864
No 7
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=1.4e-34 Score=295.63 Aligned_cols=196 Identities=23% Similarity=0.307 Sum_probs=181.1
Q ss_pred cccCchHHHHHHHHHh---cchhhHhHHHHHHHHHHHHhhCccccHHHHHHhhcC-CHHHHHHHHHHHhhhHHHhhcCcc
Q 008180 377 RTFEDSKKHSFLEELK---SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHC-SAEEKVSVFKEVLPHASKLMTDVF 452 (575)
Q Consensus 377 k~~~d~~rskLLeeL~---s~e~rk~iLs~IkG~VveLA~Dq~GSRVLQkLLe~~-s~Eer~~If~ELkp~iveLmtD~y 452 (575)
.++.|++++.+++.+. +.+++..+++.+.|++++|+.|++||||||++|+++ +++++..|++||.+++.+|++|+|
T Consensus 53 ~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~~~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~ 132 (333)
T 3bwt_A 53 ELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLN 132 (333)
T ss_dssp HHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTT
T ss_pred HHhcCcccHHHHHHHHhhCCHHHHHHHHHHHHhHHHHHHhcccccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCc
Confidence 4567888888888766 446777888999999999999999999999999998 577888899999999999999999
Q ss_pred ccHHHHHHhhcCCHHHHHHHHHHhhcChhhhccCcchhHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHH
Q 008180 453 GNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKC 532 (575)
Q Consensus 453 GNyVVQKLfE~gs~Eqr~~II~~L~g~I~~Ls~hkyGSrVVQKlLE~~s~eqr~~II~EL~g~l~~LvkDq~GNyVIQK~ 532 (575)
|||||||+|++++++.+..|++.|.+++.+|+.|+|||+|||+|+++++.+++..|+++|.+++..|++|++||||||++
T Consensus 133 gn~Viqk~l~~~~~~~~~~i~~~l~~~~~~l~~~~~Gs~Vvq~~l~~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~ 212 (333)
T 3bwt_A 133 GNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYI 212 (333)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHSHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHH
T ss_pred ccHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCChhh----HHHHHHHHHHHHHHHhcCcchHHHHHHHHhhc
Q 008180 533 IECVPAEK----IEFIISAFRGQVATLSTHPYGCRVIQPHNNAS 572 (575)
Q Consensus 533 Le~~~~k~----rk~IIk~L~~~iveLSthkyGs~VVQK~Le~~ 572 (575)
|+.++++. ++.|++.|++++.+||+|+|||+||++||+..
T Consensus 213 L~~~~~~~~~~~~~~ii~~l~~~~~~Ls~~k~gs~Vvek~l~~~ 256 (333)
T 3bwt_A 213 ITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIEKILKTA 256 (333)
T ss_dssp HHHHHHHTCCSHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHTSH
T ss_pred HHhCCccccchhHHHHHHHHHHHHHHHHcccHHHHHHHHHHccc
Confidence 99876643 68999999999999999999999999999864
No 8
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=3.7e-35 Score=305.25 Aligned_cols=195 Identities=24% Similarity=0.317 Sum_probs=162.9
Q ss_pred cCchHHHHHHHHHh---cchhhHhHHHHHHHHHHHHhhCccccHHHHHHhhcCCHHHHHHHHHHHhhhHHHhhcCccccH
Q 008180 379 FEDSKKHSFLEELK---SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY 455 (575)
Q Consensus 379 ~~d~~rskLLeeL~---s~e~rk~iLs~IkG~VveLA~Dq~GSRVLQkLLe~~s~Eer~~If~ELkp~iveLmtD~yGNy 455 (575)
+.|++++.+++.+. +.+++..+++.+.|++.+|+.|++||||||++|++++++++..|+.||.+++.+|++|+||||
T Consensus 73 ~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ 152 (369)
T 3k49_A 73 SNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNH 152 (369)
T ss_dssp HHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHH
T ss_pred hhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccch
Confidence 34444444444333 233445566666666666666666666666666667777777777788888888888999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhcChhhhccCcchhHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHh
Q 008180 456 VIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIEC 535 (575)
Q Consensus 456 VVQKLfE~gs~Eqr~~II~~L~g~I~~Ls~hkyGSrVVQKlLE~~s~eqr~~II~EL~g~l~~LvkDq~GNyVIQK~Le~ 535 (575)
|||++|++++++.+..|++.|.+++..|+.|+|||+|||+||++++.+++..|+++|.+++..|++|++||||||++|+.
T Consensus 153 ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~ 232 (369)
T 3k49_A 153 VIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQ 232 (369)
T ss_dssp HHHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhc
Confidence 99999999988889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhh------HHHHHHHHHHHHHHHhcCcchHHHHHHHHhhcC
Q 008180 536 VPAEK------IEFIISAFRGQVATLSTHPYGCRVIQPHNNASG 573 (575)
Q Consensus 536 ~~~k~------rk~IIk~L~~~iveLSthkyGs~VVQK~Le~~d 573 (575)
++++. ++.|++.|.+++.+||+|+|||+||++||++++
T Consensus 233 ~~~~~~~~~~~~~~i~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~ 276 (369)
T 3k49_A 233 DQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVVEKSILYGS 276 (369)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSC
T ss_pred CCchhhhhHhHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHhCC
Confidence 98765 678999999999999999999999999999865
No 9
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=2.9e-34 Score=305.21 Aligned_cols=197 Identities=15% Similarity=0.208 Sum_probs=178.9
Q ss_pred cccCchHHHHHHHHHh---cc-------hhhHhHHHHHHHHHHHHhhCccccHHHHHHhhcCCHHHHHHHHHHH--hhhH
Q 008180 377 RTFEDSKKHSFLEELK---SS-------NAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEV--LPHA 444 (575)
Q Consensus 377 k~~~d~~rskLLeeL~---s~-------e~rk~iLs~IkG~VveLA~Dq~GSRVLQkLLe~~s~Eer~~If~EL--kp~i 444 (575)
.+|.|+++..++++|. +. +++..+++.++|++++|+.|++|||+||++|+.++++++..|++|| .+++
T Consensus 73 ~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~~~~~i 152 (412)
T 3k62_A 73 KLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARL 152 (412)
T ss_dssp HHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSCCSHHH
T ss_pred HHHhCcHHHHHHHHHHHhCCcccccccHHHHHHHHHHHHHHHHHHHcChhhhHHHHHHHHhCCHHHHHHHHHHHhccccH
Confidence 4588999999999877 34 5677899999999999999999999999999999999999999999 7899
Q ss_pred HHhhcCccccHHHHHHhhcCCHHHHHHHHHHhh--cChhhhccCcchhHHHHHHHHhcC------------HHHHHH---
Q 008180 445 SKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLV--GQVLPLSLQMYGCRVIQKALEVIE------------LHQKSQ--- 507 (575)
Q Consensus 445 veLmtD~yGNyVVQKLfE~gs~Eqr~~II~~L~--g~I~~Ls~hkyGSrVVQKlLE~~s------------~eqr~~--- 507 (575)
.+|++|+||||||||+|++++++++..|++.|. +++.+|++|+|||+|||++||.++ .++|..
T Consensus 153 ~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~ 232 (412)
T 3k62_A 153 IAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQ 232 (412)
T ss_dssp HHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHhCccccHHHHHHHHhCCHHHHHHHHHHHhcchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999998 599999999999999999999987 345543
Q ss_pred -HHHHHHHHHHHhhcCCchhHHHHHHHHhCChhh-HHHHHH-HHHHHHHHHhcCcchHHHHHHHHhhcC
Q 008180 508 -LVLELDGHVMRCVRDQNGNHVIQKCIECVPAEK-IEFIIS-AFRGQVATLSTHPYGCRVIQPHNNASG 573 (575)
Q Consensus 508 -II~EL~g~l~~LvkDq~GNyVIQK~Le~~~~k~-rk~IIk-~L~~~iveLSthkyGs~VVQK~Le~~d 573 (575)
|++++..++..|+.|+|||||||+||+++.++. ++.|++ .|.+++++||+|||||+||+|||++++
T Consensus 233 ~L~~~I~~~~~~L~~dq~GNyViQ~iL~~g~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~ 301 (412)
T 3k62_A 233 RLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAP 301 (412)
T ss_dssp HHHHHHHHTHHHHHHSTTTHHHHHHHHHCGGGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhhCccccHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHhCC
Confidence 566677788999999999999999999988764 778887 599999999999999999999999876
No 10
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=1.3e-33 Score=296.97 Aligned_cols=197 Identities=18% Similarity=0.249 Sum_probs=176.2
Q ss_pred cccCchHHHHHHHHHh---cchhhHhHHHH-HHHHHHHHhhCccccHHHHHHhhcCCHHHHHHHHHHHhh-hHHHhhcCc
Q 008180 377 RTFEDSKKHSFLEELK---SSNAQKFELSD-IAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLP-HASKLMTDV 451 (575)
Q Consensus 377 k~~~d~~rskLLeeL~---s~e~rk~iLs~-IkG~VveLA~Dq~GSRVLQkLLe~~s~Eer~~If~ELkp-~iveLmtD~ 451 (575)
.+|.|++++.++++|. +.+++..++.. ++|++++|+.|++|||+||++|++++.+++..|+.||.+ ++..|++|+
T Consensus 64 ~L~~d~~Gn~vvQklle~~~~~~~~~li~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~ 143 (382)
T 3v71_A 64 GLCHSRNGNFIVQKLVELATPAEQRELLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQ 143 (382)
T ss_dssp HHHSSTTHHHHHHHHHHTCCHHHHHHHHHHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHST
T ss_pred HHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcchHHHHHhCccchHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcCc
Confidence 3578999999999988 33556667765 689999999999999999999999999999999999998 899999999
Q ss_pred cccHHHHHHhhcCCHHHHHHHHHHhh--cChhhhccCcchhHHHHHHHHhcCHHH-------HH----HHHHHHHHHHHH
Q 008180 452 FGNYVIQKFFEHGSPDQRKELAEKLV--GQVLPLSLQMYGCRVIQKALEVIELHQ-------KS----QLVLELDGHVMR 518 (575)
Q Consensus 452 yGNyVVQKLfE~gs~Eqr~~II~~L~--g~I~~Ls~hkyGSrVVQKlLE~~s~eq-------r~----~II~EL~g~l~~ 518 (575)
+|||||||+|++++++++..|++.|. +++..|+.|+|||+|||++|++++.++ +. .|++++.+++..
T Consensus 144 ~GnhVIQk~le~~~~~~~~~Ii~~~~~~~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~ 223 (382)
T 3v71_A 144 ISIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYR 223 (382)
T ss_dssp TTHHHHHHHHTTSCTTTSHHHHHHHHSTTHHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccccHHHHHHHHCCHHHHHHHHHHHhcccchHhHhcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997 689999999999999999999986532 22 456677778899
Q ss_pred hhcCCchhHHHHHHHHhCCh--hhHHHHHHH-HHHHHHHHhcCcchHHHHHHHHhhcC
Q 008180 519 CVRDQNGNHVIQKCIECVPA--EKIEFIISA-FRGQVATLSTHPYGCRVIQPHNNASG 573 (575)
Q Consensus 519 LvkDq~GNyVIQK~Le~~~~--k~rk~IIk~-L~~~iveLSthkyGs~VVQK~Le~~d 573 (575)
|+.|+|||||||+||+.+.+ +.|..|++. |.+++++||+|+|||+||++||++++
T Consensus 224 L~~d~~GNyVIQ~iL~~~~~~e~~r~~ii~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~ 281 (382)
T 3v71_A 224 LSSNEFANYVIQYVIKSSGIMEMYRDTIIDKCLLRNLLSMSQDKYASHVIEGAFLFAP 281 (382)
T ss_dssp HHTSTTTHHHHHHHHTCCSTHHHHHHHHHHHTTTTCHHHHTTSTTHHHHHHHHHHHCC
T ss_pred HhhCccccHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHhCC
Confidence 99999999999999999764 468889975 99999999999999999999999875
No 11
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=73.37 E-value=17 Score=35.31 Aligned_cols=19 Identities=11% Similarity=0.100 Sum_probs=9.9
Q ss_pred HhhcCCHHHHHHHHHHHhh
Q 008180 424 KLEHCSAEEKVSVFKEVLP 442 (575)
Q Consensus 424 LLe~~s~Eer~~If~ELkp 442 (575)
+|+..+++++..+|.++-+
T Consensus 39 ~l~~L~~~~~~~v~~~l~~ 57 (278)
T 2yvy_A 39 LWDELKGEHRYVVLTLLPK 57 (278)
T ss_dssp GGGGSCHHHHHHHHHHSCH
T ss_pred HHHhCCHHHHHHHHHhCCh
Confidence 4555555555555554443
No 12
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=57.37 E-value=99 Score=31.17 Aligned_cols=66 Identities=11% Similarity=0.118 Sum_probs=35.6
Q ss_pred chhHHHHHHHH--hcCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHhC---ChhhHHHHHHHHHHHHHHHhc
Q 008180 488 YGCRVIQKALE--VIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECV---PAEKIEFIISAFRGQVATLST 557 (575)
Q Consensus 488 yGSrVVQKlLE--~~s~eqr~~II~EL~g~l~~LvkDq~GNyVIQK~Le~~---~~k~rk~IIk~L~~~iveLSt 557 (575)
.=|.+|.++++ ..+.+.+..++..+ .++.=+++=--|+|.+++.- +++....+++.+.+....+++
T Consensus 143 ~Q~eLi~rlik~e~l~p~~~~lll~~i----L~l~WtE~~~~Vlq~lL~~k~~L~~~~i~~Lv~~L~~~a~~~sk 213 (264)
T 2ilr_A 143 AQTELLCCLVKMESLEPDAQVLMLGQI----LELPWKEETFLVLQSLLERQVEMTPEKFSVLMEKLCKKGLAATT 213 (264)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHH----HHSCCCHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHC-----CC
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHH----HhccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhHHhhc
Confidence 33556666663 35555555444444 44566666677788888752 455566666666555444444
No 13
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=54.55 E-value=2.2e+02 Score=31.20 Aligned_cols=157 Identities=15% Similarity=0.141 Sum_probs=78.2
Q ss_pred HHHHhhCccccHHH---HHHhhcCCHHHHHHHHHHHhhhHHHhhcCccccHHHHHHhhcCCHHHHHHHHHHhhcChhhhc
Q 008180 408 IVEFSVDQHGSRFI---QQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLS 484 (575)
Q Consensus 408 VveLA~Dq~GSRVL---QkLLe~~s~Eer~~If~ELkp~iveLmtD~yGNyVVQKLfE~gs~Eqr~~II~~L~g~I~~Ls 484 (575)
+..+|.+.+-++|. -++|....+.|...+-+.|...+..=.+...+..+.| |..+.+..|..+++-|..++..|-
T Consensus 89 Lp~~ck~~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~--i~~~~e~~Rer~lkFi~~kl~~l~ 166 (507)
T 3u0r_A 89 LPQFATGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQ--ILQGEDIVRERAIKFLSTKLKTLP 166 (507)
T ss_dssp GGGGCCTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--HHHSCHHHHHHHHHHHHHHGGGSC
T ss_pred hHHHhhhhhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHH--HcccchHHHHHHHHHHHHHHhhcc
Confidence 44455554455544 3344555566666665555444332223333322222 222566778888888877777776
Q ss_pred cCcchhHH-------HHHHHHhcCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHh----------CChhhHHHHHHH
Q 008180 485 LQMYGCRV-------IQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIEC----------VPAEKIEFIISA 547 (575)
Q Consensus 485 ~hkyGSrV-------VQKlLE~~s~eqr~~II~EL~g~l~~LvkDq~GNyVIQK~Le~----------~~~k~rk~IIk~ 547 (575)
...+.-.+ +.++++-++.++-..+++-| .-..+..+..|.--+-.++.. .+++..++++..
T Consensus 167 ~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL--~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C 244 (507)
T 3u0r_A 167 DEVLTKEVEELILTESKKVLEDVTGEEFVLFMKIL--SGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQC 244 (507)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHH--HTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHH--HhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHH
Confidence 66665432 33444445555554444333 112333444443322222222 245556677777
Q ss_pred HHHHHHHHhcCcchHHHHHHH
Q 008180 548 FRGQVATLSTHPYGCRVIQPH 568 (575)
Q Consensus 548 L~~~iveLSthkyGs~VVQK~ 568 (575)
+...+.-.+....++..+.-+
T Consensus 245 ~~~ALP~FS~~v~StkFv~y~ 265 (507)
T 3u0r_A 245 TRQAVPLFSKNVHSTRFVTYF 265 (507)
T ss_dssp HHHHGGGCBTTBCCHHHHHHH
T ss_pred HHHHHHHhccCCChHHHHHHH
Confidence 666655555554444444333
No 14
>2xes_A Protein PAT1 homolog 1; mRNA decapping, P-bodies, RNA binding protein; 2.10A {Homo sapiens} PDB: 2xer_A 2xeq_A
Probab=52.92 E-value=37 Score=33.74 Aligned_cols=93 Identities=12% Similarity=0.089 Sum_probs=65.8
Q ss_pred hHHHhhcCccccHHHHHHhhcCCHHHHHHHHHHhhcChhhhccCcchhH-------HHHHHHHhcCHHHHHHHHHHH---
Q 008180 443 HASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCR-------VIQKALEVIELHQKSQLVLEL--- 512 (575)
Q Consensus 443 ~iveLmtD~yGNyVVQKLfE~gs~Eqr~~II~~L~g~I~~Ls~hkyGSr-------VVQKlLE~~s~eqr~~II~EL--- 512 (575)
.+..++.-+-|+-+|.++|.+-+.+++-.|+..|..|+..|...--.-. .+.++|..++-.....++..|
T Consensus 72 ~Fi~~Lsv~KGKkLl~Rll~~L~~~q~~til~~I~~~L~~Li~~d~~d~vL~~L~~~~~~~I~~~~l~~l~~~l~~Ll~~ 151 (248)
T 2xes_A 72 HFVQIMCIRKGKRMVARILPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVSITSLLRQLMNL 151 (248)
T ss_dssp HHHHHHTSHHHHHHHHHHGGGSCHHHHHHHHHHHHHTHHHHHHHTTTTCCGGGGHHHHHHHHTTCCHHHHHHHHHHHTSS
T ss_pred ceeeeeehHhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 4678888889999999999999999999999988888777633211112 334444455556556666666
Q ss_pred --HHHHHHhhcCCchhHHHHHHHHh
Q 008180 513 --DGHVMRCVRDQNGNHVIQKCIEC 535 (575)
Q Consensus 513 --~g~l~~LvkDq~GNyVIQK~Le~ 535 (575)
..++..++++++|--+|..+|..
T Consensus 152 ~~~~~l~~v~~~k~GlSlLt~LLsR 176 (248)
T 2xes_A 152 PGSPHLTAVLQNKFGLSLLLILLSR 176 (248)
T ss_dssp TTTTCCHHHHTSHHHHHHHHHHHHH
T ss_pred cCCccceeeeecCchHHHHHHHHHH
Confidence 12466677888888888887765
No 15
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=47.48 E-value=2.5e+02 Score=29.39 Aligned_cols=17 Identities=6% Similarity=-0.214 Sum_probs=7.1
Q ss_pred ccHHHHHHhhcCCHHHH
Q 008180 417 GSRFIQQKLEHCSAEEK 433 (575)
Q Consensus 417 GSRVLQkLLe~~s~Eer 433 (575)
+...|-.+|...+.+.+
T Consensus 294 ~i~~Lv~lL~~~~~~v~ 310 (529)
T 3tpo_A 294 VVPQLVKLLGATELPIV 310 (529)
T ss_dssp CHHHHHHHHTCSCHHHH
T ss_pred chHHHHHHhcCCChhHH
Confidence 33334444444444433
No 16
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=46.94 E-value=44 Score=30.12 Aligned_cols=125 Identities=11% Similarity=0.077 Sum_probs=65.6
Q ss_pred CccccHHHHHHhhcCCHHHHHHHHHHHhhhHHH-hhcCccccHHHHHHhhcCCHHHHHHHHHHhhcC-hhhhccCcchhH
Q 008180 414 DQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASK-LMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQ-VLPLSLQMYGCR 491 (575)
Q Consensus 414 Dq~GSRVLQkLLe~~s~Eer~~If~ELkp~ive-LmtD~yGNyVVQKLfE~gs~Eqr~~II~~L~g~-I~~Ls~hkyGSr 491 (575)
+..|...|...+..+..+....+ ..+-.. -..+..|...+...+..+..+..+.|++..... +..-..+..|..
T Consensus 43 ~~~g~t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t 118 (241)
T 1k1a_A 43 NNLRQTPLHLAVITTLPSVVRLL----VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT 118 (241)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCC
T ss_pred cccCCCHHHHHHHcCCHHHHHHH----HHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCc
Confidence 34455566666666555433333 222221 244667777777777777776666666654321 122234555665
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHh-hcC-CchhHHHHHHHHhCChhhHHHHHH
Q 008180 492 VIQKALEVIELHQKSQLVLELDGHVMRC-VRD-QNGNHVIQKCIECVPAEKIEFIIS 546 (575)
Q Consensus 492 VVQKlLE~~s~eqr~~II~EL~g~l~~L-vkD-q~GNyVIQK~Le~~~~k~rk~IIk 546 (575)
.+..++..... ++++.|...-..+ ..+ .+|...+..++.....+..+.+++
T Consensus 119 ~L~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 171 (241)
T 1k1a_A 119 ALHVAVNTECQ----ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ 171 (241)
T ss_dssp HHHHHHHHTCH----HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCH----HHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHH
Confidence 66555554433 3344443321111 233 678888888877776555555554
No 17
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=44.41 E-value=11 Score=40.25 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=36.8
Q ss_pred HHHhhcCCHHHHHHHHHHHhhhHHHhhcCccccHHHHHHhhcCCHHHHHHHHHHhhcChhhhccCcchhHHHHHHHHhcC
Q 008180 422 QQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501 (575)
Q Consensus 422 QkLLe~~s~Eer~~If~ELkp~iveLmtD~yGNyVVQKLfE~gs~Eqr~~II~~L~g~I~~Ls~hkyGSrVVQKlLE~~s 501 (575)
-.+|+..+++++..+|.++-+.. ...+|+..+++.+..|++.|.. .-+..+++..+
T Consensus 57 a~ll~~L~~~~~~~v~~~L~~~~------------~~evl~~l~~~~~~~ll~~l~~------------d~~~~~l~~l~ 112 (473)
T 2zy9_A 57 LALWDELKGEHRYVVLTLLPKAK------------AAEVLSHLSPEEQAEYLKTLPP------------WRLREILEELS 112 (473)
T ss_dssp HHGGGGSCHHHHHHHHHHSCHHH------------HHHHTTSSCHHHHHHHHHHSCH------------HHHHHHHHHSC
T ss_pred HHHHHhCCHHHHHHHHHhCCHHH------------HHHHHHcCCHHHHHHHHHcCCH------------HHHHHHHHhCC
Confidence 34666667777777766554432 2345555555555555555432 22333555555
Q ss_pred HHHHHHHHHHHH
Q 008180 502 LHQKSQLVLELD 513 (575)
Q Consensus 502 ~eqr~~II~EL~ 513 (575)
.+++..+++++.
T Consensus 113 ~dd~~~ll~~l~ 124 (473)
T 2zy9_A 113 LDDLADALQAVR 124 (473)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC
Confidence 555555555553
No 18
>2xes_A Protein PAT1 homolog 1; mRNA decapping, P-bodies, RNA binding protein; 2.10A {Homo sapiens} PDB: 2xer_A 2xeq_A
Probab=41.01 E-value=1e+02 Score=30.67 Aligned_cols=95 Identities=13% Similarity=0.146 Sum_probs=70.6
Q ss_pred HHHHHHhhCccccHHHHHHhhcCCHHHHHHHHHHHhhhHHHhhcCccccH-------HHHHHhhcCCHHHHHHHHHHhh-
Q 008180 406 GRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNY-------VIQKFFEHGSPDQRKELAEKLV- 477 (575)
Q Consensus 406 G~VveLA~Dq~GSRVLQkLLe~~s~Eer~~If~ELkp~iveLmtD~yGNy-------VVQKLfE~gs~Eqr~~II~~L~- 477 (575)
..++.+..-..|-++|-++|.+.+.+++..|+..|..|+..|...--.-. .+.+++...+-.....++..+.
T Consensus 71 ~~Fi~~Lsv~KGKkLl~Rll~~L~~~q~~til~~I~~~L~~Li~~d~~d~vL~~L~~~~~~~I~~~~l~~l~~~l~~Ll~ 150 (248)
T 2xes_A 71 DHFVQIMCIRKGKRMVARILPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVSITSLLRQLMN 150 (248)
T ss_dssp HHHHHHHTSHHHHHHHHHHGGGSCHHHHHHHHHHHHHTHHHHHHHTTTTCCGGGGHHHHHHHHTTCCHHHHHHHHHHHTS
T ss_pred CceeeeeehHhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 57888889999999999999999999999999999998877743211111 2334445566665556666662
Q ss_pred ----cChhhhccCcchhHHHHHHHHhc
Q 008180 478 ----GQVLPLSLQMYGCRVIQKALEVI 500 (575)
Q Consensus 478 ----g~I~~Ls~hkyGSrVVQKlLE~~ 500 (575)
.++.-++++++|.-+|-.++..+
T Consensus 151 ~~~~~~l~~v~~~k~GlSlLt~LLsRa 177 (248)
T 2xes_A 151 LPGSPHLTAVLQNKFGLSLLLILLSRG 177 (248)
T ss_dssp STTTTCCHHHHTSHHHHHHHHHHHHHH
T ss_pred ccCCccceeeeecCchHHHHHHHHHHH
Confidence 36778899999999988888653
No 19
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=37.79 E-value=76 Score=28.52 Aligned_cols=127 Identities=9% Similarity=-0.039 Sum_probs=76.8
Q ss_pred CccccHHHHHHhhcCCHHHHHHHHHHHhhhHHHhh--------------cCccccHHHHHHhhcCCHHHHHHHHHHhhcC
Q 008180 414 DQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLM--------------TDVFGNYVIQKFFEHGSPDQRKELAEKLVGQ 479 (575)
Q Consensus 414 Dq~GSRVLQkLLe~~s~Eer~~If~ELkp~iveLm--------------tD~yGNyVVQKLfE~gs~Eqr~~II~~L~g~ 479 (575)
+..|...|......+..+....+++ +-..+- .+.+|...+....+.+..+..+.|++. .
T Consensus 72 ~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g 144 (232)
T 2rfa_A 72 LYEGQTALHIAVINQNVNLVRALLA----RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH---G 144 (232)
T ss_dssp TTTTCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHT---T
T ss_pred CCCCcCHHHHHHHcCCHHHHHHHHh----CCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHC---C
Confidence 3456666666666666554443332 221111 133688888888888877766666653 1
Q ss_pred hhhhccCcchhHHHHHHHHhcCHHHHHHHHHHHHHHHHH-------hhcCCchhHHHHHHHHhCChhhHHHHHHH
Q 008180 480 VLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMR-------CVRDQNGNHVIQKCIECVPAEKIEFIISA 547 (575)
Q Consensus 480 I~~Ls~hkyGSrVVQKlLE~~s~eqr~~II~EL~g~l~~-------LvkDq~GNyVIQK~Le~~~~k~rk~IIk~ 547 (575)
.---..+..|.-.+..++.....+....|++.|..+-.. ..+|..|...+..+.+.+..+..+.+++.
T Consensus 145 a~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 145 ADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp CCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 112345677887787777777666655666666543221 36788999888888887765555555443
No 20
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=36.49 E-value=1.1e+02 Score=26.28 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=33.8
Q ss_pred HHHHhhcCCHHHHHHHHHHhhcChhhhccCcchhHHHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Q 008180 457 IQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCV 520 (575)
Q Consensus 457 VQKLfE~gs~Eqr~~II~~L~g~I~~Ls~hkyGSrVVQKlLE~~s~eqr~~II~EL~g~l~~Lv 520 (575)
-++|.++|..++.+.++......--.+..+.--..|.-++-+.++.+-|.+|+..++..+...+
T Consensus 30 ~~rL~EcGW~Devr~~~r~~i~~~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~~~v 93 (96)
T 3mhs_B 30 KARLLQEGWVDKVKDLTKSEMNINESTNFTQILSTVEPKALEMVSDSTRETVLKQIREFLEEIV 93 (96)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHCCcHHHHHHHHHHHHHhcCCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHHHHHHHHh
Confidence 4556777766666655554432112233333333444445555666666666666666555444
No 21
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=33.72 E-value=4.7e+02 Score=28.03 Aligned_cols=46 Identities=20% Similarity=0.326 Sum_probs=29.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHhCChh
Q 008180 493 IQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAE 539 (575)
Q Consensus 493 VQKlLE~~s~eqr~~II~EL~g~l~~LvkDq~GNyVIQK~Le~~~~k 539 (575)
|+.+++...+.+-..++..|-..+.+|+...+ ..|.+.+|.....+
T Consensus 308 leeile~~~~~ef~~i~~~lF~~la~ci~S~h-fqVAErAL~~w~N~ 353 (449)
T 2npp_B 308 LEEILDVIEPSEFVKIMEPLFRQLAKCVSSPH-FQVAERALYYWNNE 353 (449)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSC-HHHHHHHHGGGGCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHCCH
Confidence 44566677777777777777667777776644 34666666555433
No 22
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=33.52 E-value=1.1e+02 Score=29.47 Aligned_cols=49 Identities=14% Similarity=0.235 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHhhcChhhhccC----cchhHHHHHHHHhcCHHHHHHHHHHHH
Q 008180 465 SPDQRKELAEKLVGQVLPLSLQ----MYGCRVIQKALEVIELHQKSQLVLELD 513 (575)
Q Consensus 465 s~Eqr~~II~~L~g~I~~Ls~h----kyGSrVVQKlLE~~s~eqr~~II~EL~ 513 (575)
+++...+|-+.|..++..+... .-|...+-.++...+......|++.|.
T Consensus 58 ~p~~~~~l~~~L~~~l~~~~~~~~~~~gG~~~~A~IlN~~~~~~e~~il~~L~ 110 (216)
T 4fhr_B 58 SPEVVKEIERNLEKKISGFVSRTFSKVGGIDTAAEIMNNLDRTTEKKIMDKLV 110 (216)
T ss_dssp CHHHHHHHHHHHHHHSTTCC-------CSHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccccccccCCcHHHHHHHHHcCChhHHHHHHHHHH
Confidence 4555555544444443333222 225566666777766666666666553
No 23
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=31.60 E-value=1.2e+02 Score=29.51 Aligned_cols=18 Identities=0% Similarity=0.128 Sum_probs=8.7
Q ss_pred HhhcCCHHHHHHHHHHHh
Q 008180 424 KLEHCSAEEKVSVFKEVL 441 (575)
Q Consensus 424 LLe~~s~Eer~~If~ELk 441 (575)
+|+..+++++..+|.+|-
T Consensus 42 ~l~~L~~~~~~~v~~~l~ 59 (286)
T 2oux_A 42 FYQSLDEKDRQHLYNYLS 59 (286)
T ss_dssp HHTTSCHHHHHHHHHHSC
T ss_pred HHHhCCHHHHHHHHHhCC
Confidence 444445555555554443
No 24
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=31.00 E-value=2.3e+02 Score=28.64 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=25.9
Q ss_pred cccHHHHHHhhc--------CCHHHHHHHHHHhhcChhhhccCcchhHHHHHHHHh
Q 008180 452 FGNYVIQKFFEH--------GSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEV 499 (575)
Q Consensus 452 yGNyVVQKLfE~--------gs~Eqr~~II~~L~g~I~~Ls~hkyGSrVVQKlLE~ 499 (575)
-+.|++||++.. .+.|-+..+...|..-+..|+.++ ..|++..++.+
T Consensus 164 vAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~p-s~RLLKhiirc 218 (268)
T 2fv2_A 164 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEP-SARLLKHVVRC 218 (268)
T ss_dssp HHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 567888888753 345555555555544444454443 34555555544
No 25
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=30.88 E-value=1.1e+02 Score=29.48 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=7.8
Q ss_pred HHhhcCCHHHHHHHHHHh
Q 008180 459 KFFEHGSPDQRKELAEKL 476 (575)
Q Consensus 459 KLfE~gs~Eqr~~II~~L 476 (575)
.+++..+++.+..|++.+
T Consensus 86 ~ll~~l~~d~~~~ll~~l 103 (278)
T 2yvy_A 86 EILEELSLDDLADALQAV 103 (278)
T ss_dssp HHHHHSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhC
Confidence 344444444444444443
No 26
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=30.52 E-value=2.4e+02 Score=28.47 Aligned_cols=47 Identities=15% Similarity=0.325 Sum_probs=25.1
Q ss_pred chhHHHHHHHH--------hcCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHh
Q 008180 488 YGCRVIQKALE--------VIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIEC 535 (575)
Q Consensus 488 yGSrVVQKlLE--------~~s~eqr~~II~EL~g~l~~LvkDq~GNyVIQK~Le~ 535 (575)
-+..+|||++. +.+.+....+..-|..-+..++.++.. +++.+++.|
T Consensus 164 vAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~-RLLKhiirc 218 (268)
T 2fv2_A 164 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSA-RLLKHVVRC 218 (268)
T ss_dssp HHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHH
Confidence 35667777763 233444444445455555556655543 555555554
No 27
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=30.01 E-value=4.7e+02 Score=26.80 Aligned_cols=169 Identities=12% Similarity=0.165 Sum_probs=0.0
Q ss_pred cccCchHHHHHHHHHhcchhhHhHHHHHHHHHHHHhhCccccHHHHHHhhcCCHHHHHHHHHHHhh----hHHHhhcCcc
Q 008180 377 RTFEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLP----HASKLMTDVF 452 (575)
Q Consensus 377 k~~~d~~rskLLeeL~s~e~rk~iLs~IkG~VveLA~Dq~GSRVLQkLLe~~s~Eer~~If~ELkp----~iveLmtD~y 452 (575)
+.+..++...+++++.. .......+....-+...+.. +|+.-.|.....|+..|.+ .+....-...
T Consensus 87 ~aLg~~~A~~ll~~i~~---------~~~~~~~~~L~~~dp~~la~-~i~~EhPQtiAlILs~L~p~~AA~vL~~Lp~~~ 156 (329)
T 3hjl_A 87 KVIPPTLAEKFRGILEL---------GDAEKILKEIEKVDSRILAS-LLKNEHPQTIALFLSQLSPKKSAEIIQNLPEEL 156 (329)
T ss_dssp HHSCCCHHHHHHHHHHH---------HHHHHHHHHHHTSCHHHHHH-HHTTSCHHHHHHHHTTSCHHHHHHHHHTSCHHH
T ss_pred HhCCHHHHHHHHHHHhc---------cccCCHHHHHHCCCHHHHHH-HHHhCCHHHHHHHHHcCCHHHHHHHHHhCCHHH
Q ss_pred ccHHHHHHhhcCC--HHHHHHHHHHhhcChhhh----ccCcchhHHHHHHHHhcCHHHHHHHHHHHHHH-----------
Q 008180 453 GNYVIQKFFEHGS--PDQRKELAEKLVGQVLPL----SLQMYGCRVIQKALEVIELHQKSQLVLELDGH----------- 515 (575)
Q Consensus 453 GNyVVQKLfE~gs--~Eqr~~II~~L~g~I~~L----s~hkyGSrVVQKlLE~~s~eqr~~II~EL~g~----------- 515 (575)
-+-|+..+..... ++...+|-+.|...+..+ ....-|...+-.+|...+......|++.|...
T Consensus 157 r~ev~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~~gG~~~vA~ILN~~d~~~e~~il~~L~~~dpela~~Ir~~ 236 (329)
T 3hjl_A 157 KKEVVKRIATLENVNVQYVKELAQILLEEISSLGAKEALKLEGTAVAAELLNTLDKETRELILQSIGQEDPLLEERIREK 236 (329)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHSCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhcCChHHHHHHHHHHHHhCHHHHHHHHHH
Q ss_pred -------------HHHhhcCCchhHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 008180 516 -------------VMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATL 555 (575)
Q Consensus 516 -------------l~~LvkDq~GNyVIQK~Le~~~~k~rk~IIk~L~~~iveL 555 (575)
-+..+....-+-.+-..|+-.+++.++.|++.+-....++
T Consensus 237 MF~Fedl~~lddr~iq~llrev~~~~L~~ALKga~~elrekil~nmS~Raa~~ 289 (329)
T 3hjl_A 237 MFTFEDIRKLSDRDIIEILKVVDKNTLMIALLGAPEDIKQKFLSNMSKRAAKL 289 (329)
T ss_dssp HSCGGGGGGSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHTTSCHHHHHH
T ss_pred hcCHHHHhCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHhcCHHHHHH
No 28
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=29.69 E-value=5e+02 Score=27.05 Aligned_cols=173 Identities=12% Similarity=0.090 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhCcc------ccHHHHHHhhcCCHHHHHHHHHHHhhhHHHhhcCccccHHHHHH-----hhcCCHH
Q 008180 399 FELSDIAGRIVEFSVDQH------GSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKF-----FEHGSPD 467 (575)
Q Consensus 399 ~iLs~IkG~VveLA~Dq~------GSRVLQkLLe~~s~Eer~~If~ELkp~iveLmtD~yGNyVVQKL-----fE~gs~E 467 (575)
.....+...++.+..+.+ +++.|..+.+.........+-..+.+.+++|+.+....-....+ +-.++++
T Consensus 228 ~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~ 307 (510)
T 3ul1_B 228 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE 307 (510)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHH
Q ss_pred HHHHHHH-HhhcChhhhccCcc------hhHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcCCc------hhHHHHHHHH
Q 008180 468 QRKELAE-KLVGQVLPLSLQMY------GCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQN------GNHVIQKCIE 534 (575)
Q Consensus 468 qr~~II~-~L~g~I~~Ls~hky------GSrVVQKlLE~~s~eqr~~II~EL~g~l~~LvkDq~------GNyVIQK~Le 534 (575)
++..+++ .....+..|..+.. +|++|..+...........+-..+.+.++.++.+.+ +.++|..+..
T Consensus 308 ~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 308 QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Q ss_pred hCChhhHHHHHHH-HHHHHHHHhcCcchHHHHHHHHhhc
Q 008180 535 CVPAEKIEFIISA-FRGQVATLSTHPYGCRVIQPHNNAS 572 (575)
Q Consensus 535 ~~~~k~rk~IIk~-L~~~iveLSthkyGs~VVQK~Le~~ 572 (575)
.++.+.+..|++. ....+.+|-..+- ..|++.+++.+
T Consensus 388 ~~~~~~~~~L~~~g~i~~L~~LL~~~d-~~i~~~~L~aL 425 (510)
T 3ul1_B 388 GGTVEQIVYLVHCGIIEPLMNLLSAKD-TKIIQVILDAI 425 (510)
T ss_dssp HCCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHhcCCC-HHHHHHHHHHH
No 29
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=29.66 E-value=5.3e+02 Score=27.31 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=46.6
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHhCChhh--------HHHHHHHHHHHHHHHhcCcchHHH
Q 008180 493 IQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEK--------IEFIISAFRGQVATLSTHPYGCRV 564 (575)
Q Consensus 493 VQKlLE~~s~eqr~~II~EL~g~l~~LvkDq~GNyVIQK~Le~~~~k~--------rk~IIk~L~~~iveLSthkyGs~V 564 (575)
|+.+++...+++-..+...|-..+.+|+...+ ..|.+..|.....+. ++.|+-.+.+.+.+.+..-+-.-|
T Consensus 275 le~iLe~~~~~~f~~i~~~lf~~la~ci~S~h-fqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v 353 (403)
T 3fga_B 275 LEEILDVIEPSEFVKIMEPLFRQLAKCVSSPH-FQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTI 353 (403)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSC-HHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHH
Confidence 45577777777777777777777777777773 457777776654433 445555666667776666555443
Q ss_pred H
Q 008180 565 I 565 (575)
Q Consensus 565 V 565 (575)
.
T Consensus 354 ~ 354 (403)
T 3fga_B 354 H 354 (403)
T ss_dssp H
T ss_pred H
Confidence 3
No 30
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=27.51 E-value=1.9e+02 Score=24.41 Aligned_cols=125 Identities=13% Similarity=0.013 Sum_probs=70.1
Q ss_pred hCccccHHHHHHhhcCCHHHHHHHHHHHhhhHHHhhcCccccHHHHHHhhcCCHHHHHHHHHHhhcChhhhccCcchhHH
Q 008180 413 VDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRV 492 (575)
Q Consensus 413 ~Dq~GSRVLQkLLe~~s~Eer~~If~ELkp~iveLmtD~yGNyVVQKLfE~gs~Eqr~~II~~L~g~I~~Ls~hkyGSrV 492 (575)
.+..|...|......+..+....+++. ...--..+..|...+...+..+..+..+.+++.=. . --..+..|.-.
T Consensus 32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~--~~~~~~~g~t~ 105 (167)
T 3v31_A 32 TDEEGFTPLMWAAAHGQIAVVEFLLQN---GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV-D--VNEYDWNGGTP 105 (167)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTC-C--TTCCCTTSCCH
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHc---CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCC-C--CCcCCCCCCCH
Confidence 455566666666666665443333322 11122357788888888888887776666665411 1 12345566666
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHH-HHHhhcCCchhHHHHHHHHhCChhhHHHHHHH
Q 008180 493 IQKALEVIELHQKSQLVLELDGH-VMRCVRDQNGNHVIQKCIECVPAEKIEFIISA 547 (575)
Q Consensus 493 VQKlLE~~s~eqr~~II~EL~g~-l~~LvkDq~GNyVIQK~Le~~~~k~rk~IIk~ 547 (575)
+..++..... .+++.|..+ ...-.+|..|...+..++.....+..+.|++.
T Consensus 106 L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (167)
T 3v31_A 106 LLYAVHGNHV----KCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157 (167)
T ss_dssp HHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCH----HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence 6666655443 344444332 11235688888888888877765544444443
No 31
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=26.82 E-value=55 Score=27.68 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=9.0
Q ss_pred cCccccHHHHHHhhcCCHHH
Q 008180 449 TDVFGNYVIQKFFEHGSPDQ 468 (575)
Q Consensus 449 tD~yGNyVVQKLfE~gs~Eq 468 (575)
.+.+|...+......+..+.
T Consensus 30 ~~~~g~t~L~~A~~~~~~~~ 49 (153)
T 1awc_B 30 TDWLGTSPLHLAAQYGHFST 49 (153)
T ss_dssp CCTTCCCHHHHHHHHTCHHH
T ss_pred cCCCCCCHHHHHHHcCCHHH
Confidence 34444444444444444433
No 32
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=26.76 E-value=1.8e+02 Score=22.80 Aligned_cols=90 Identities=17% Similarity=0.069 Sum_probs=48.4
Q ss_pred cCccccHHHHHHhhcCCHHHHHHHHHHhhcChhhhccCcchhHHHHHHHHhcCHHHHHHHHHHHHHHHH-HhhcCCchhH
Q 008180 449 TDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVM-RCVRDQNGNH 527 (575)
Q Consensus 449 tD~yGNyVVQKLfE~gs~Eqr~~II~~L~g~I~~Ls~hkyGSrVVQKlLE~~s~eqr~~II~EL~g~l~-~LvkDq~GNy 527 (575)
.+..|...+...+..+..+..+.+++.= ...-..+..|...+..++..... ++++.|..+-. --.+|..|..
T Consensus 31 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t 103 (126)
T 1n0r_A 31 KDKNGRTPLHLAARNGHLEVVKLLLEAG---ADVNAKDKNGRTPLHLAARNGHL----EVVKLLLEAGADVNAKDKNGRT 103 (126)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCC
T ss_pred cCCCCCcHHHHHHHcCcHHHHHHHHHcC---CCCcccCCCCCcHHHHHHHcChH----HHHHHHHHcCCCCcccCCCCCC
Confidence 4667777777777777766555555421 11113345566666666655443 33444333211 1245677777
Q ss_pred HHHHHHHhCChhhHHHHH
Q 008180 528 VIQKCIECVPAEKIEFII 545 (575)
Q Consensus 528 VIQK~Le~~~~k~rk~II 545 (575)
.+..++.....+..+.++
T Consensus 104 ~l~~A~~~~~~~~~~~Ll 121 (126)
T 1n0r_A 104 PLHLAARNGHLEVVKLLL 121 (126)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHH
Confidence 777777766544444443
No 33
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.31 E-value=3.6e+02 Score=24.43 Aligned_cols=128 Identities=11% Similarity=0.062 Sum_probs=78.5
Q ss_pred cccHHHHHHhhcCCHHHHHHHHHHHhhhHHHh-hcC--------------ccccHHHHHHhhcCCHHHHHHHHHHhhcCh
Q 008180 416 HGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL-MTD--------------VFGNYVIQKFFEHGSPDQRKELAEKLVGQV 480 (575)
Q Consensus 416 ~GSRVLQkLLe~~s~Eer~~If~ELkp~iveL-mtD--------------~yGNyVVQKLfE~gs~Eqr~~II~~L~g~I 480 (575)
.|...|......+..+....++ .+-..+ ..+ .+|...+......+..+..+.|++.-....
T Consensus 92 ~g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga 167 (260)
T 3jxi_A 92 RGQTALHIAIERRCKHYVELLV----EKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQA 167 (260)
T ss_dssp ESBCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHH----hCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC
Confidence 6666777777777655444333 322222 233 578888888888888776666666210111
Q ss_pred hhhccCcchhHHHHHHHHhcC-----HHHHHHHHHHHHHHHHHh--------hcCCchhHHHHHHHHhCChhhHHHHHHH
Q 008180 481 LPLSLQMYGCRVIQKALEVIE-----LHQKSQLVLELDGHVMRC--------VRDQNGNHVIQKCIECVPAEKIEFIISA 547 (575)
Q Consensus 481 ~~Ls~hkyGSrVVQKlLE~~s-----~eqr~~II~EL~g~l~~L--------vkDq~GNyVIQK~Le~~~~k~rk~IIk~ 547 (575)
.-=..+..|.-.+..+..... .+...++++.|..+-..+ ++|..|...+..+...+..+..+.+++.
T Consensus 168 ~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 247 (260)
T 3jxi_A 168 DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247 (260)
T ss_dssp CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 122456778877777776544 122246667766654444 6899999999998888776555555443
No 34
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=26.27 E-value=1.4e+02 Score=24.56 Aligned_cols=89 Identities=17% Similarity=0.124 Sum_probs=49.1
Q ss_pred cCccccHHHHHHhhcCCHHHHHHHHHHhhcChhhhccCcchhHHHHHHHHhcCHHHHHHHHHHHHHHH-HHhhcCCchhH
Q 008180 449 TDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHV-MRCVRDQNGNH 527 (575)
Q Consensus 449 tD~yGNyVVQKLfE~gs~Eqr~~II~~L~g~I~~Ls~hkyGSrVVQKlLE~~s~eqr~~II~EL~g~l-~~LvkDq~GNy 527 (575)
.|..|...+...+..+..+..+.|++. + ..--..+..|.-.+..++..... ++++.|..+= .--.+|.+|..
T Consensus 43 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g-~~~~~~d~~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t 115 (136)
T 2jab_A 43 KDEYGLTPLYLATAHGHLEIVEVLLKN--G-ADVNAVDAIGFTPLHLAAFIGHL----EIAEVLLKHGADVNAQDKFGKT 115 (136)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHT--T-CCTTCCCTTCCCHHHHHHHHTCH----HHHHHHHHTTCCTTCCCTTSCC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc--C-CCCCcCCCCCCCHHHHHHHcCCH----HHHHHHHHcCCCCcCcCCCCCC
Confidence 466777777777777776655555543 1 11113455666666666555443 3344443321 12246777877
Q ss_pred HHHHHHHhCChhhHHHH
Q 008180 528 VIQKCIECVPAEKIEFI 544 (575)
Q Consensus 528 VIQK~Le~~~~k~rk~I 544 (575)
.+..++.....+..+.+
T Consensus 116 pl~~A~~~~~~~~~~~L 132 (136)
T 2jab_A 116 AFDISIGNGNEDLAEIL 132 (136)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHH
Confidence 77777776654444433
No 35
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=25.75 E-value=3.7e+02 Score=24.76 Aligned_cols=129 Identities=10% Similarity=0.050 Sum_probs=77.7
Q ss_pred CccccHHHHHHhhcCCHHHHHHHHHHHhhhHHHh-hcCc--------------cccHHHHHHhhcCCHHHHHHHHHHhhc
Q 008180 414 DQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKL-MTDV--------------FGNYVIQKFFEHGSPDQRKELAEKLVG 478 (575)
Q Consensus 414 Dq~GSRVLQkLLe~~s~Eer~~If~ELkp~iveL-mtD~--------------yGNyVVQKLfE~gs~Eqr~~II~~L~g 478 (575)
+..|...|......+..+....+++ +-..+ ..+. +|...+-.....+..+..+.|++.-..
T Consensus 98 d~~g~tpL~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 173 (273)
T 2pnn_A 98 YYKGQTALHIAIERRNMTLVTLLVE----NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQ 173 (273)
T ss_dssp TTTTCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred cCCCCCHHHHHHHcCCHHHHHHHHH----CCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccC
Confidence 4467777777777776554444433 22222 2232 788888888888887766666663101
Q ss_pred ChhhhccCcchhHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHh--------hcCCchhHHHHHHHHhCChhhHHHHH
Q 008180 479 QVLPLSLQMYGCRVIQKALEVIEL-----HQKSQLVLELDGHVMRC--------VRDQNGNHVIQKCIECVPAEKIEFII 545 (575)
Q Consensus 479 ~I~~Ls~hkyGSrVVQKlLE~~s~-----eqr~~II~EL~g~l~~L--------vkDq~GNyVIQK~Le~~~~k~rk~II 545 (575)
...--..+..|.-.+..+++.... +...++++.|..+-..+ ++|..|...+..+...+..+..+.|+
T Consensus 174 gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll 253 (273)
T 2pnn_A 174 PADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL 253 (273)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHH
Confidence 112224567787777777765431 11245666665554444 58999999998888887665555554
Q ss_pred H
Q 008180 546 S 546 (575)
Q Consensus 546 k 546 (575)
+
T Consensus 254 ~ 254 (273)
T 2pnn_A 254 Q 254 (273)
T ss_dssp H
T ss_pred H
Confidence 4
No 36
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=25.35 E-value=4.2e+02 Score=27.55 Aligned_cols=70 Identities=20% Similarity=0.171 Sum_probs=41.0
Q ss_pred CchHHHHHHHHHhcch--hhHhHHHHHHHH-------HHHHhhCccccHHHHHHhhcCCHHHHHHHHHHHhhhHHHhhcC
Q 008180 380 EDSKKHSFLEELKSSN--AQKFELSDIAGR-------IVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTD 450 (575)
Q Consensus 380 ~d~~rskLLeeL~s~e--~rk~iLs~IkG~-------VveLA~Dq~GSRVLQkLLe~~s~Eer~~If~ELkp~iveLmtD 450 (575)
.......+++.|.+.. .++..|-.++.- +.||. ..+|...|=++++.++.+.... +..-+.+||.+
T Consensus 116 ps~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI-~~~GL~~Li~vi~~~~gN~q~Y----~L~AL~~LM~~ 190 (339)
T 3dad_A 116 LSVRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFV-HSEGLSCLIRVGAAADHNYQSY----ILRALGQLMLF 190 (339)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHH-HTTHHHHHHHHHTTSCHHHHHH----HHHHHHHHTTS
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHH-HhccHHHHHHHHHhcChHHHHH----HHHHHHHHHhc
Confidence 4456677888888543 333344444331 22333 3678888888888886555444 44445677777
Q ss_pred cccc
Q 008180 451 VFGN 454 (575)
Q Consensus 451 ~yGN 454 (575)
.+|-
T Consensus 191 v~Gm 194 (339)
T 3dad_A 191 VDGM 194 (339)
T ss_dssp HHHH
T ss_pred cccc
Confidence 6665
No 37
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=24.49 E-value=1.8e+02 Score=25.60 Aligned_cols=125 Identities=11% Similarity=0.042 Sum_probs=65.8
Q ss_pred hCccccHHHHHHhhcCCHHHHHHHHHHHhhhHHHhhcCccccHHHHHHhhcCCHHHHHHHHHHhhcChhhhccCcchhHH
Q 008180 413 VDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRV 492 (575)
Q Consensus 413 ~Dq~GSRVLQkLLe~~s~Eer~~If~ELkp~iveLmtD~yGNyVVQKLfE~gs~Eqr~~II~~L~g~I~~Ls~hkyGSrV 492 (575)
.+..|...|...+..+..+....+++. ..-..-..+.+|...+...+..+..+..+.+++. ....-..+..|...
T Consensus 38 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~ 112 (240)
T 3eu9_A 38 PDKENVTLLHWAAINNRIDLVKYYISK--GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY---GADPSLIDGEGCSC 112 (240)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCH
T ss_pred CCCCCCCHHHHHHHhCCHHHHHHHHHc--CCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCH
Confidence 345566667767766665544433321 1111223455677777777777776655555543 11122345667667
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHhCC-hhhHHHHHH
Q 008180 493 IQKALEVIELHQKSQLVLELDGHV-MRCVRDQNGNHVIQKCIECVP-AEKIEFIIS 546 (575)
Q Consensus 493 VQKlLE~~s~eqr~~II~EL~g~l-~~LvkDq~GNyVIQK~Le~~~-~k~rk~IIk 546 (575)
+..++.....+ +++.|..+- .--..|..|...+..++.... .+..+.+++
T Consensus 113 l~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~ 164 (240)
T 3eu9_A 113 IHLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT 164 (240)
T ss_dssp HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHH
T ss_pred HHHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHh
Confidence 77666665543 444443321 122457777777777665543 333444433
No 38
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=24.43 E-value=1.2e+02 Score=32.32 Aligned_cols=62 Identities=10% Similarity=0.055 Sum_probs=25.5
Q ss_pred cCchHHHHHHHHHhcchhhHhHHHHHHHHHHHHhhCccccHHHHHHhhcCCHHHHHHHHHHHh
Q 008180 379 FEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVL 441 (575)
Q Consensus 379 ~~d~~rskLLeeL~s~e~rk~iLs~IkG~VveLA~Dq~GSRVLQkLLe~~s~Eer~~If~ELk 441 (575)
+...++..++++|-. +.+..+++.+-.....=....-.......+|+..+.++...+++++-
T Consensus 51 l~~~d~a~ll~~L~~-~~~~~v~~~L~~~~~~evl~~l~~~~~~~ll~~l~~d~~~~~l~~l~ 112 (473)
T 2zy9_A 51 IHPQDLLALWDELKG-EHRYVVLTLLPKAKAAEVLSHLSPEEQAEYLKTLPPWRLREILEELS 112 (473)
T ss_dssp SCHHHHHHGGGGSCH-HHHHHHHHHSCHHHHHHHTTSSCHHHHHHHHHHSCHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHhCCH-HHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 344555555555443 33333444333222222222233333444444444444444444443
No 39
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=22.23 E-value=2.3e+02 Score=25.05 Aligned_cols=129 Identities=12% Similarity=0.036 Sum_probs=68.1
Q ss_pred hCccccHHHHHHhhcCCHHHHHHHHHHHhhhHHHhhcCccccHHHHHHhhcCCHHHHHHHHHHhhcChhhhccCcchhHH
Q 008180 413 VDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRV 492 (575)
Q Consensus 413 ~Dq~GSRVLQkLLe~~s~Eer~~If~ELkp~iveLmtD~yGNyVVQKLfE~gs~Eqr~~II~~L~g~I~~Ls~hkyGSrV 492 (575)
.+..|...|...+..+..+....+++.-.+--.....+..|...+...++.+..+..+.+++.-. ....-..+..|.-.
T Consensus 32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~~~g~t~ 110 (228)
T 2dzn_A 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL-KPDLNKITNQGVTC 110 (228)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSS-CCCTTCCCTTCCCH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CcccccCCcCCCCH
Confidence 56667777777777666554433332211111111267778877777777776654444433210 02222345556666
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHH-HHHhhcCCchhHHHHHHHHhCChhhHHHHHH
Q 008180 493 IQKALEVIELHQKSQLVLELDGH-VMRCVRDQNGNHVIQKCIECVPAEKIEFIIS 546 (575)
Q Consensus 493 VQKlLE~~s~eqr~~II~EL~g~-l~~LvkDq~GNyVIQK~Le~~~~k~rk~IIk 546 (575)
+..++.....+ +++.|..+ ..--.+|.+|...+..+......+..+.+++
T Consensus 111 L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 111 LHLAVGKKWFE----VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161 (228)
T ss_dssp HHHHHHTTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHcCCHh----HHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 66666554433 44444332 1112457788888888877766554444443
No 40
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=21.96 E-value=1.8e+02 Score=26.76 Aligned_cols=30 Identities=3% Similarity=0.057 Sum_probs=14.6
Q ss_pred HHHHHHHhcCHHHHHHHH-HHHHHHHHHhhc
Q 008180 492 VIQKALEVIELHQKSQLV-LELDGHVMRCVR 521 (575)
Q Consensus 492 VVQKlLE~~s~eqr~~II-~EL~g~l~~Lvk 521 (575)
+++.|++.|...-..+|. ++|.+.+..++.
T Consensus 75 LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~ 105 (163)
T 1x5b_A 75 LLGACVANCGKIFHLEVCSRDFATEVRAVIK 105 (163)
T ss_dssp HHHHHHHHTCHHHHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHHHHHHc
Confidence 455555555555444444 334444444443
No 41
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=21.80 E-value=4.5e+02 Score=26.95 Aligned_cols=115 Identities=12% Similarity=0.039 Sum_probs=59.1
Q ss_pred CchHHHHHHHHHhcchhhHhHHHHHHHHHH--HHhhCccccHHHHHHhhcCCHHHHHHHHHHHhhhHHHhhcCcc-ccHH
Q 008180 380 EDSKKHSFLEELKSSNAQKFELSDIAGRIV--EFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVF-GNYV 456 (575)
Q Consensus 380 ~d~~rskLLeeL~s~e~rk~iLs~IkG~Vv--eLA~Dq~GSRVLQkLLe~~s~Eer~~If~ELkp~iveLmtD~y-GNyV 456 (575)
+..++..+|.-|...+.... ++.+..-+. ++...|+...++..+. .++.-+..+++-++.+...|..--- |.+.
T Consensus 266 ~~~ek~~ll~aL~~s~d~~l-l~~~L~~~l~~~~ir~qD~~~~~~~v~--~n~~g~~~aw~fl~~nw~~l~~~~~~~~~~ 342 (419)
T 3rjo_A 266 SSTEKSQIEFALCRTQNKEK-LQWLLDESFKGDKIKTQEFPQILTLIG--RNPVGYPLAWQFLRKNWNKLVQKFELGSSS 342 (419)
T ss_dssp CHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTSSSCGGGHHHHHHHHH--TSTTTHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCchhHHHHHHHHHh--cCcchHHHHHHHHHHHHHHHHHHhCcCchh
Confidence 44566667766654433322 222222221 1234566677777653 3556667777777777766654221 3355
Q ss_pred HHHHhh-----cCCHHHHHHHHHHhhcChhhhccCcchhHHHHHHHHhcC
Q 008180 457 IQKFFE-----HGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIE 501 (575)
Q Consensus 457 VQKLfE-----~gs~Eqr~~II~~L~g~I~~Ls~hkyGSrVVQKlLE~~s 501 (575)
+..++. +.++++.+++-+-|..+-.. .-+.+.++..+|.+.
T Consensus 343 ~~~~i~~~~~~~~t~~~l~e~~~Ff~~~~~~----~~~~~~~~qale~i~ 388 (419)
T 3rjo_A 343 IAHMVMGTTNQFSTRTRLEEVKGFFSSLKEN----GSQLRCVQQTIETIE 388 (419)
T ss_dssp HHHHHHHTTTTCCSHHHHHHHHHHHHTTTTC-----CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHhCccc----chHHHHHHHHHHHHH
Confidence 555554 24455555554444443111 113466777777654
No 42
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=21.58 E-value=94 Score=29.45 Aligned_cols=25 Identities=16% Similarity=0.053 Sum_probs=11.3
Q ss_pred cCccccHHHHHHhhcCCHHHHHHHH
Q 008180 449 TDVFGNYVIQKFFEHGSPDQRKELA 473 (575)
Q Consensus 449 tD~yGNyVVQKLfE~gs~Eqr~~II 473 (575)
.|..|...+...+..+..+..+.|+
T Consensus 87 ~~~~g~t~L~~A~~~g~~~iv~~Ll 111 (351)
T 3utm_A 87 KDKGGLVPLHNACSYGHYEVTELLL 111 (351)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCCcHHHHHHHCCCHHHHHHHH
Confidence 3444555555555554444333333
No 43
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.06 E-value=1.5e+02 Score=26.44 Aligned_cols=132 Identities=14% Similarity=0.017 Sum_probs=75.3
Q ss_pred hCccccHHHHHHhhcCCHHHHHHHHHHHhhhHHH---hhcCccccHHHHHHhhcCCHHHHHHHHHHhhcChhhhc-----
Q 008180 413 VDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASK---LMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLS----- 484 (575)
Q Consensus 413 ~Dq~GSRVLQkLLe~~s~Eer~~If~ELkp~ive---LmtD~yGNyVVQKLfE~gs~Eqr~~II~~L~g~I~~Ls----- 484 (575)
.+.+|...|......+..+....+++.- ..+.. -..|..|...+...+..+..+..+.|++.-. .+....
T Consensus 33 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~~~~ 110 (232)
T 2rfa_A 33 RGAMGETALHIAALYDNLEAAMVLMEAA-PELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGA-SVSARATGSVF 110 (232)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHC-GGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCCSGGG
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcC-chhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCC-CCCcccCCcce
Confidence 3566766777777777655544444321 11111 3456788888888888888877776666421 111110
Q ss_pred ------cCcchhHHHHHHHHhcCHHHHHHHHHHHHHHH-HHhhcCCchhHHHHHHHHhCChhhHHHHHHHHHH
Q 008180 485 ------LQMYGCRVIQKALEVIELHQKSQLVLELDGHV-MRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRG 550 (575)
Q Consensus 485 ------~hkyGSrVVQKlLE~~s~eqr~~II~EL~g~l-~~LvkDq~GNyVIQK~Le~~~~k~rk~IIk~L~~ 550 (575)
.+.+|.-.+..+...... .+++.|..+= .--.+|.+|...+..++.....+....|++.|..
T Consensus 111 ~~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~ 179 (232)
T 2rfa_A 111 HYRPHNLIYYGEHPLSFAACVGSE----EIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLS 179 (232)
T ss_dssp SCCTTCSCCCCSSHHHHHHHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred eecccccccCCCCHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHh
Confidence 122566666666665544 3444443321 1224688888888888877766555555555543
No 44
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=21.06 E-value=3.5e+02 Score=23.27 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=31.5
Q ss_pred HHHHhhcCCHHHHHHHHHHhhc--ChhhhccCcchhHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 008180 457 IQKFFEHGSPDQRKELAEKLVG--QVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHV 516 (575)
Q Consensus 457 VQKLfE~gs~Eqr~~II~~L~g--~I~~Ls~hkyGSrVVQKlLE~~s~eqr~~II~EL~g~l 516 (575)
-++|.++|..++.+.++..+.. .+-.+..+.--..|.-++-+.++.+.|.+|+..++..+
T Consensus 34 ~~rL~EcGW~Devr~~~r~~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~rIr~fL 95 (101)
T 4dhx_B 34 RAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALVPDSVKKELLQRIRTFL 95 (101)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCcHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHHHHH
Confidence 3456777766666666555432 22333444444444445555556666666665555443
No 45
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=20.89 E-value=2.4e+02 Score=24.85 Aligned_cols=123 Identities=7% Similarity=-0.031 Sum_probs=68.1
Q ss_pred CccccHHHHHHhhcCCHHHHHHHHHHHhhhH--HHhhcCccccHHHHHHhhcCCHHHHHHHHHHhhcChhhhccCcchhH
Q 008180 414 DQHGSRFIQQKLEHCSAEEKVSVFKEVLPHA--SKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCR 491 (575)
Q Consensus 414 Dq~GSRVLQkLLe~~s~Eer~~If~ELkp~i--veLmtD~yGNyVVQKLfE~gs~Eqr~~II~~L~g~I~~Ls~hkyGSr 491 (575)
+..|...|...+..+..+....+ ..+- .--..+..|...+......+..+..+.+++.- ..--..+..|.-
T Consensus 55 ~~~g~t~L~~A~~~~~~~~v~~L----l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t 127 (223)
T 2f8y_A 55 DNMGRTPLHAAVSADAQGVFQIL----IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH---ADVNAVDDLGKS 127 (223)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHH----HHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT---CCTTCBCTTSCB
T ss_pred CCCCCCHHHHHHHcCCHHHHHHH----HHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcC---CCCcCcCCCCCc
Confidence 44555556666665554433333 3221 12245677777777777777766555555521 112234566766
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHH-HHHhhcCCchhHHHHHHHHhCChhhHHHHHHH
Q 008180 492 VIQKALEVIELHQKSQLVLELDGH-VMRCVRDQNGNHVIQKCIECVPAEKIEFIISA 547 (575)
Q Consensus 492 VVQKlLE~~s~eqr~~II~EL~g~-l~~LvkDq~GNyVIQK~Le~~~~k~rk~IIk~ 547 (575)
.+..++.....+ +++.|..+ ...-.+|.+|...+..++.....+..+.+++.
T Consensus 128 ~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 180 (223)
T 2f8y_A 128 ALHWAAAVNNVD----AAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 180 (223)
T ss_dssp HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 666666655433 34444332 11225678888888888877766555555543
No 46
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=20.05 E-value=1.9e+02 Score=24.70 Aligned_cols=121 Identities=14% Similarity=0.017 Sum_probs=65.4
Q ss_pred hCccccHHHHHHhhcCCHHHHHHHHHHHhhhHHH-hhcCccccHHHHHHhhcCCHHHHHHHHHHhhcChhhhccCcchhH
Q 008180 413 VDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASK-LMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCR 491 (575)
Q Consensus 413 ~Dq~GSRVLQkLLe~~s~Eer~~If~ELkp~ive-LmtD~yGNyVVQKLfE~gs~Eqr~~II~~L~g~I~~Ls~hkyGSr 491 (575)
.+..|...|......+..+....++ .+-.. -..+..|...+...+..+..+..+.+++.= ..--..+..|.-
T Consensus 43 ~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t 115 (169)
T 2y1l_E 43 EDASGWTPLHLAAFNGHLEIVEVLL----KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG---ADVNANDMEGHT 115 (169)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCCCCCCCCC
Confidence 3455666666666666554333333 22222 245777888888888887776665555531 111234556666
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHH-HhhcCCchhHHHHHHHHhCChhhHHHH
Q 008180 492 VIQKALEVIELHQKSQLVLELDGHVM-RCVRDQNGNHVIQKCIECVPAEKIEFI 544 (575)
Q Consensus 492 VVQKlLE~~s~eqr~~II~EL~g~l~-~LvkDq~GNyVIQK~Le~~~~k~rk~I 544 (575)
.+..++..... .+++.|..+-. --.+|.+|...+..++.....+..+.+
T Consensus 116 ~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 165 (169)
T 2y1l_E 116 PLHLAAMFGHL----EIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165 (169)
T ss_dssp HHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCH----HHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence 66666655443 34444433211 124677787777777776654444333
Done!