Query 008180
Match_columns 575
No_of_seqs 247 out of 1303
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 20:03:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008180.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008180hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m8za_ a.118.1.8 (A:) Pumilio 100.0 1.8E-35 1.3E-39 298.5 11.7 190 384-573 2-191 (339)
2 d1m8za_ a.118.1.8 (A:) Pumilio 100.0 6.4E-30 4.7E-34 257.5 18.6 201 374-574 25-264 (339)
3 d2yvxa1 a.118.26.1 (A:7-131) M 55.9 5.8 0.00042 32.4 4.6 105 419-544 13-117 (125)
4 d2ouxa1 a.118.26.1 (A:6-135) M 45.7 33 0.0024 27.8 7.9 41 493-545 83-123 (130)
5 d1lkvx_ a.118.14.1 (X:) FliG { 20.8 74 0.0054 27.0 6.1 145 429-573 1-167 (213)
6 d2a0ba_ a.24.10.1 (A:) Aerobic 20.4 1.7E+02 0.012 22.4 7.9 26 457-482 42-67 (118)
7 d1b3ua_ a.118.1.2 (A:) Constan 17.8 2.6E+02 0.019 26.2 10.1 17 544-560 516-532 (588)
8 d2yvxa1 a.118.26.1 (A:7-131) M 17.7 2.1E+02 0.016 22.2 8.2 76 424-508 42-117 (125)
9 d1gxha_ a.28.2.1 (A:) ImmE8 (I 15.0 71 0.0052 25.1 3.9 43 379-421 10-52 (85)
10 d2jaka1 a.118.1.20 (A:30-372) 13.8 4.8E+02 0.035 24.4 15.9 175 377-552 128-337 (343)
No 1
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1.8e-35 Score=298.46 Aligned_cols=190 Identities=59% Similarity=0.979 Sum_probs=185.3
Q ss_pred HHHHHHHHhcchhhHhHHHHHHHHHHHHhhCccccHHHHHHhhcCCHHHHHHHHHHHhhhHHHhhcCccccHHHHHHhhc
Q 008180 384 KHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEH 463 (575)
Q Consensus 384 rskLLeeL~s~e~rk~iLs~IkG~VveLA~Dq~GSRVLQkLLe~~s~Eer~~If~ELkp~iveLmtD~yGNyVVQKLfE~ 463 (575)
|++|++++.+++.+.++|++++|+++++|+||+|||+||++|++++++++..||++|.+++.+||+|+||||||||+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~q~gSr~lQ~~l~~~~~~~~~~I~~~l~~~~~~L~~~~~gn~vvqkll~~ 81 (339)
T d1m8za_ 2 RSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEF 81 (339)
T ss_dssp CCHHHHHHHTTCCTTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHH
T ss_pred CchHhHHhhcCCCCCCcHHHHHhHHHHHhcCchhhHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhCcccchhHHHHHhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcChhhhccCcchhHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHhCChhhHHH
Q 008180 464 GSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEF 543 (575)
Q Consensus 464 gs~Eqr~~II~~L~g~I~~Ls~hkyGSrVVQKlLE~~s~eqr~~II~EL~g~l~~LvkDq~GNyVIQK~Le~~~~k~rk~ 543 (575)
++++++..|++.|.+++.+|+.|+|||+|||++++....+++..++++|.+++..+++|++|+||+++|++..+++.++.
T Consensus 82 ~~~~~~~~i~~~l~~~~~~L~~~~~gs~Vvq~l~~~~~~~~~~~l~~el~~~~~~l~~d~~~~~v~~~~l~~~~~~~~~~ 161 (339)
T d1m8za_ 82 GSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF 161 (339)
T ss_dssp SCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHHHSCGGGGHH
T ss_pred CCHHHHHHHHHHHHhhHHHHhcccccchHHHhhhccCCHHHHHHHHHHHhhhhHHHhcCCCcchHHHHHHHhcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHhhcC
Q 008180 544 IISAFRGQVATLSTHPYGCRVIQPHNNASG 573 (575)
Q Consensus 544 IIk~L~~~iveLSthkyGs~VVQK~Le~~d 573 (575)
|++.+.+++.+|++|++||+||+++|+.+.
T Consensus 162 i~~~~~~~~~~l~~~~~g~~vlq~~l~~~~ 191 (339)
T d1m8za_ 162 IIDAFKGQVFALSTHPYGCRVIQRILEHCL 191 (339)
T ss_dssp HHHHTTTTHHHHHTSTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCcchhHHHHHHHhcCC
Confidence 999999999999999999999999999764
No 2
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.96 E-value=6.4e-30 Score=257.53 Aligned_cols=201 Identities=30% Similarity=0.404 Sum_probs=179.4
Q ss_pred CCCcccCchHHHHHHHHHh---cchhhHhHHHHHHHHHHHHhhCccccHHHHHHhhcCCHHHHHHHHHHHhhhHHHhhcC
Q 008180 374 EGQRTFEDSKKHSFLEELK---SSNAQKFELSDIAGRIVEFSVDQHGSRFIQQKLEHCSAEEKVSVFKEVLPHASKLMTD 450 (575)
Q Consensus 374 ~~~k~~~d~~rskLLeeL~---s~e~rk~iLs~IkG~VveLA~Dq~GSRVLQkLLe~~s~Eer~~If~ELkp~iveLmtD 450 (575)
+..+++.|+.++++||.+. +.+++..+++++.+++.+|+.|++|++++|++|++++++++..|+++|.+++.+|+.|
T Consensus 25 ~~~~~~~~q~gSr~lQ~~l~~~~~~~~~~I~~~l~~~~~~L~~~~~gn~vvqkll~~~~~~~~~~i~~~l~~~~~~L~~~ 104 (339)
T d1m8za_ 25 HIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQ 104 (339)
T ss_dssp CHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHTTCHHHHHTS
T ss_pred HHHHHhcCchhhHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhCcccchhHHHHHhhCCHHHHHHHHHHHHhhHHHHhcc
Confidence 3345578999999999766 5678889999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHhhcCCHHHHHHHHHHh------------------------------------hcChhhhccCcchhHHHH
Q 008180 451 VFGNYVIQKFFEHGSPDQRKELAEKL------------------------------------VGQVLPLSLQMYGCRVIQ 494 (575)
Q Consensus 451 ~yGNyVVQKLfE~gs~Eqr~~II~~L------------------------------------~g~I~~Ls~hkyGSrVVQ 494 (575)
+||++|||++++..+.+++..++++| .+++..|+.|++||+|||
T Consensus 105 ~~gs~Vvq~l~~~~~~~~~~~l~~el~~~~~~l~~d~~~~~v~~~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~vlq 184 (339)
T d1m8za_ 105 MYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQ 184 (339)
T ss_dssp TTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHHHSCGGGGHHHHHHTTTTHHHHHTSTTHHHHHH
T ss_pred cccchHHHhhhccCCHHHHHHHHHHHhhhhHHHhcCCCcchHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 99999999999888776665554444 445556777888888888
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHhCChhhHHHHHHHHHHHHHHHhcCcchHHHHHHHHhhcCC
Q 008180 495 KALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQPHNNASGF 574 (575)
Q Consensus 495 KlLE~~s~eqr~~II~EL~g~l~~LvkDq~GNyVIQK~Le~~~~k~rk~IIk~L~~~iveLSthkyGs~VVQK~Le~~dd 574 (575)
++++.++.+++..++++|.+++..|++|++||||||++|+.++++.++.|++.|++++.+|++|+|||+||++||+.+++
T Consensus 185 ~~l~~~~~~~~~~l~~~l~~~~~~L~~~~~G~~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~gS~vve~~l~~~~~ 264 (339)
T d1m8za_ 185 RILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASR 264 (339)
T ss_dssp HHHHHSCHHHHHHHHHHHHHTHHHHTTSTTHHHHHHHHHHHSCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHcchhHHHHHHHHHHhCCH
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999998763
No 3
>d2yvxa1 a.118.26.1 (A:7-131) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=55.93 E-value=5.8 Score=32.45 Aligned_cols=105 Identities=10% Similarity=0.109 Sum_probs=55.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhhhHHHhhcCccccHHHHHHhhcCCHHHHHHHHHHhhcChhhhccCcchhHHHHHHHH
Q 008180 419 RFIQQKLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALE 498 (575)
Q Consensus 419 RVLQkLLe~~s~Eer~~If~ELkp~iveLmtD~yGNyVVQKLfE~gs~Eqr~~II~~L~g~I~~Ls~hkyGSrVVQKlLE 498 (575)
..|+.+|+...+.+...++.++-+.-... +|+..+.+....|+..+-.....-..+..+..-+.++++
T Consensus 13 ~~l~~~l~~~hpaDiA~~l~~L~~~~r~~------------l~~~l~~~~~aev~~~L~~~~~~~il~~l~~~~~~~~l~ 80 (125)
T d2yvxa1 13 RALREVLEEIHPQDLLALWDELKGEHRYV------------VLTLLPKAKAAEVLSHLSPEEQAEYLKTLPPWRLREILE 80 (125)
T ss_dssp HHHHTTTTTSCHHHHHHTTTTSCTTHHHH------------HTTTSCHHHHHHHHHTSCHHHHHHTTSSSCHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCHHHHHH------------HHhcCCHHHHHHHHHhCCHHHHHHHHHhCCHHHHHHHHH
Confidence 34455555555555555555544332222 333334444444444444433333333444455666888
Q ss_pred hcCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHhCChhhHHHH
Q 008180 499 VIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFI 544 (575)
Q Consensus 499 ~~s~eqr~~II~EL~g~l~~LvkDq~GNyVIQK~Le~~~~k~rk~I 544 (575)
....++...++.+|.... --++.++|...+++.|+.|
T Consensus 81 ~m~~DD~adll~~L~~e~---------~~~~~~iL~~l~~~~r~~i 117 (125)
T d2yvxa1 81 ELSLDDLADALQAVRKED---------PAYFQRLKDLLDPRTRAEV 117 (125)
T ss_dssp SSCHHHHHHHHHHHHTTC---------HHHHHHHGGGSCHHHHHHH
T ss_pred HCCchHHHHHHHHCCHHH---------HHHHHHHHHcCCHHHHHHH
Confidence 888888888888775311 1245566666666665544
No 4
>d2ouxa1 a.118.26.1 (A:6-135) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}
Probab=45.67 E-value=33 Score=27.82 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=20.8
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHhCChhhHHHHH
Q 008180 493 IQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFII 545 (575)
Q Consensus 493 VQKlLE~~s~eqr~~II~EL~g~l~~LvkDq~GNyVIQK~Le~~~~k~rk~II 545 (575)
+..+++..+.++...|+.+|.+. ....+|...+++.|..|-
T Consensus 83 ~a~il~~m~~DDaadll~~L~~~------------~~~~iL~~l~~~~r~~i~ 123 (130)
T d2ouxa1 83 AADMLAEMYTDNAVDLLNMLDKS------------QKAKYLSLLSSEEAGEIK 123 (130)
T ss_dssp HHHHHTTSCHHHHHHHHHHSCHH------------HHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHCCHH------------HHHHHHHcCCHHHHHHHH
Confidence 33455555555555555555332 234455555555555443
No 5
>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}
Probab=20.77 E-value=74 Score=27.02 Aligned_cols=145 Identities=7% Similarity=0.047 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhhhHHHhhcCccccHHHHHHhhcCCHHHHHHHHHHhhc----------------------ChhhhccC
Q 008180 429 SAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVG----------------------QVLPLSLQ 486 (575)
Q Consensus 429 s~Eer~~If~ELkp~iveLmtD~yGNyVVQKLfE~gs~Eqr~~II~~L~g----------------------~I~~Ls~h 486 (575)
.|++...++.+..++...+....--.=-.-.+|+..+++.+..|+..+.. ....-...
T Consensus 1 dp~~la~~l~~e~p~~~A~iL~~L~~d~aa~vL~~L~~~~~~~il~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (213)
T d1lkvx_ 1 DPVQLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVKEIERNLEKKISGFVSRTFSK 80 (213)
T ss_dssp CCTHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHhcccccccchHHHHHHHHHHHhccccccchhhhc
Q ss_pred cchhHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHhCChhhHHHHHHHHHHHHHHHhcCcchHHHHH
Q 008180 487 MYGCRVIQKALEVIELHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQVATLSTHPYGCRVIQ 566 (575)
Q Consensus 487 kyGSrVVQKlLE~~s~eqr~~II~EL~g~l~~LvkDq~GNyVIQK~Le~~~~k~rk~IIk~L~~~iveLSthkyGs~VVQ 566 (575)
..|...+-.++.......+..++..|...-..++.+..+..+----|..........++..+...-.-.+...-..-++.
T Consensus 81 ~~~~~~v~~il~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~f~dl~~l~~~~~~~~l~~i~~~~~~~a~~~~~~e~~~ 160 (213)
T d1lkvx_ 81 VGGIDTAAEIMNNLDRTTEKKIMDKLVQENPELADEIRRRMFVFEDILKLDDRSIQLVLREVDTRDLALALKGASDELKE 160 (213)
T ss_dssp CCCHHHHHHHHHTSCHHHHHHHHHHHHHHCHHHHHHHHHHHCCGGGGGGSCHHHHHHHHTTSCHHHHHHHHTTCCHHHHH
T ss_pred chHHHHHHHHHHhcccccchhheeeeeecChhhhhhHhhhccccccHHHHccccHhHHHHHhhhhhheeehhcCCHHHHH
Q ss_pred HHHhhcC
Q 008180 567 PHNNASG 573 (575)
Q Consensus 567 K~Le~~d 573 (575)
++|+..+
T Consensus 161 ~~l~~~~ 167 (213)
T d1lkvx_ 161 KIFKNMS 167 (213)
T ss_dssp HHHTTSC
T ss_pred HHHHhCC
No 6
>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}
Probab=20.41 E-value=1.7e+02 Score=22.44 Aligned_cols=26 Identities=12% Similarity=0.072 Sum_probs=15.5
Q ss_pred HHHHhhcCCHHHHHHHHHHhhcChhh
Q 008180 457 IQKFFEHGSPDQRKELAEKLVGQVLP 482 (575)
Q Consensus 457 VQKLfE~gs~Eqr~~II~~L~g~I~~ 482 (575)
+++.++..+.+....++..|+|....
T Consensus 42 l~~a~~~~d~~~~~~~aH~LKgsa~~ 67 (118)
T d2a0ba_ 42 LESNLTAQDKKGIVEEGHKIKGAAGS 67 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666664443
No 7
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.83 E-value=2.6e+02 Score=26.25 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhcCcc
Q 008180 544 IISAFRGQVATLSTHPY 560 (575)
Q Consensus 544 IIk~L~~~iveLSthky 560 (575)
+.+.+.+.+.+++.|+.
T Consensus 516 ~~~~ilp~ll~~~~D~v 532 (588)
T d1b3ua_ 516 TTKHMLPTVLRMAGDPV 532 (588)
T ss_dssp HHHHTHHHHHHGGGCSC
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 34445556666666653
No 8
>d2yvxa1 a.118.26.1 (A:7-131) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=17.68 E-value=2.1e+02 Score=22.22 Aligned_cols=76 Identities=9% Similarity=0.159 Sum_probs=54.1
Q ss_pred HhhcCCHHHHHHHHHHHhhhHHHhhcCccccHHHHHHhhcCCHHHHHHHHHHhhcChhhhccCcchhHHHHHHHHhcCHH
Q 008180 424 KLEHCSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSPDQRKELAEKLVGQVLPLSLQMYGCRVIQKALEVIELH 503 (575)
Q Consensus 424 LLe~~s~Eer~~If~ELkp~iveLmtD~yGNyVVQKLfE~gs~Eqr~~II~~L~g~I~~Ls~hkyGSrVVQKlLE~~s~e 503 (575)
+++..+.+....||.++-+....-.......--+.++|+...++....|++.+-.... .+++++++..+.+
T Consensus 42 l~~~l~~~~~aev~~~L~~~~~~~il~~l~~~~~~~~l~~m~~DD~adll~~L~~e~~---------~~~~~iL~~l~~~ 112 (125)
T d2yvxa1 42 VLTLLPKAKAAEVLSHLSPEEQAEYLKTLPPWRLREILEELSLDDLADALQAVRKEDP---------AYFQRLKDLLDPR 112 (125)
T ss_dssp HTTTSCHHHHHHHHHTSCHHHHHHTTSSSCHHHHHHHTTSSCHHHHHHHHHHHHTTCH---------HHHHHHGGGSCHH
T ss_pred HHhcCCHHHHHHHHHhCCHHHHHHHHHhCCHHHHHHHHHHCCchHHHHHHHHCCHHHH---------HHHHHHHHcCCHH
Confidence 4555577777788888877766666666677777788888888888888888754321 2456777777777
Q ss_pred HHHHH
Q 008180 504 QKSQL 508 (575)
Q Consensus 504 qr~~I 508 (575)
+|..|
T Consensus 113 ~r~~i 117 (125)
T d2yvxa1 113 TRAEV 117 (125)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 9
>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
Probab=14.97 E-value=71 Score=25.07 Aligned_cols=43 Identities=12% Similarity=0.303 Sum_probs=30.3
Q ss_pred cCchHHHHHHHHHhcchhhHhHHHHHHHHHHHHhhCccccHHH
Q 008180 379 FEDSKKHSFLEELKSSNAQKFELSDIAGRIVEFSVDQHGSRFI 421 (575)
Q Consensus 379 ~~d~~rskLLeeL~s~e~rk~iLs~IkG~VveLA~Dq~GSRVL 421 (575)
.+..+=..||.++.+.+...-.+..+..|+..+..|+.||-+|
T Consensus 10 YTE~EFl~fl~~i~n~~~~e~~~d~ll~hF~~iteHP~gsDLI 52 (85)
T d1gxha_ 10 YTETEFKKIIEDIINCEGDEKKQDDNLEHFISVTEHPSGSDLI 52 (85)
T ss_dssp SCHHHHHHHHHHHHHTCSSSHHHHHHHHHHHHTTCCTTTTHHH
T ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCcee
Confidence 4445555677777755555566777778888888888888765
No 10
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.84 E-value=4.8e+02 Score=24.43 Aligned_cols=175 Identities=15% Similarity=0.140 Sum_probs=0.0
Q ss_pred cccCchHHHHHHHHHhcchhhH--------------------hHHHHHHHHHHHHh---hCccccHHHHHHhhc------
Q 008180 377 RTFEDSKKHSFLEELKSSNAQK--------------------FELSDIAGRIVEFS---VDQHGSRFIQQKLEH------ 427 (575)
Q Consensus 377 k~~~d~~rskLLeeL~s~e~rk--------------------~iLs~IkG~VveLA---~Dq~GSRVLQkLLe~------ 427 (575)
+.++..+..++++-|.+.+.|. ++.+.+...++++. .+++|.--|=.++..
T Consensus 128 ~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~ 207 (343)
T d2jaka1 128 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFA 207 (343)
T ss_dssp TTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCC
T ss_pred hhCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhcc
Q ss_pred --CCHHHHHHHHHHHhhhHHHhhcCccccHHHHHHhhcC--CHHHHHHHHHHhhcChhhhccCcchhH--HHHHHHHhcC
Q 008180 428 --CSAEEKVSVFKEVLPHASKLMTDVFGNYVIQKFFEHG--SPDQRKELAEKLVGQVLPLSLQMYGCR--VIQKALEVIE 501 (575)
Q Consensus 428 --~s~Eer~~If~ELkp~iveLmtD~yGNyVVQKLfE~g--s~Eqr~~II~~L~g~I~~Ls~hkyGSr--VVQKlLE~~s 501 (575)
..+|.+..+.+-|.|=...=....|-.-+.+.+..+. ++.....+++.|..+...-...|.=+. -|..+++...
T Consensus 208 ~plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~~i~~llk~WP~t~~~Kev~FL~el~~il~~~~ 287 (343)
T d2jaka1 208 LPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIE 287 (343)
T ss_dssp SSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCC
T ss_pred CCchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCC
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHhCChhhHHHHHHHHHHHH
Q 008180 502 LHQKSQLVLELDGHVMRCVRDQNGNHVIQKCIECVPAEKIEFIISAFRGQV 552 (575)
Q Consensus 502 ~eqr~~II~EL~g~l~~LvkDq~GNyVIQK~Le~~~~k~rk~IIk~L~~~i 552 (575)
+++-..++..|-..+.+|+..+ -..|.++++.....+....+++.-...+
T Consensus 288 ~~~f~~~~~~lf~~la~ci~S~-h~qVAErAl~~w~N~~~~~li~~n~~~i 337 (343)
T d2jaka1 288 PSEFVKIMEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDNAAKI 337 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCS-SHHHHHHHHGGGGCHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHCCHHHHHHHHhCccce
Done!