BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008181
(575 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 551 bits (1420), Expect = e-157, Method: Compositional matrix adjust.
Identities = 290/536 (54%), Positives = 383/536 (71%), Gaps = 7/536 (1%)
Query: 33 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEF 92
AK++ F AR ML+GV+ +A+AVKVT+GPKGRNV+I+KS G P++TKDGV+VA+ IE
Sbjct: 3 AKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIEL 62
Query: 93 RDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKM 152
DK +++GA +V++VA TN AGDGTT ATVL QAI+ EG K+VAAG+N MDL+ GI +
Sbjct: 63 SDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDV 122
Query: 153 AIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNT 212
A V+ +KS A+ ++ E+ QV TISANGE IG+ +A AM++VG EGVITV +
Sbjct: 123 ATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKG 182
Query: 213 MVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVE 272
M E+EVV GM+ RGY+SPYFVT+ ELE+ IL+++KK+S + +V LLE ++
Sbjct: 183 METEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQ 242
Query: 273 KNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIIS 332
+ LLIVAEDVE +ALA L++NK G+K+ A+KAPGFGD R+A L D+AILTGG++IS
Sbjct: 243 SQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVIS 302
Query: 333 EDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFD 392
ED G+ L+ V +MLG AKKV+++ D+T ++ G G+K IE R ++ Q + ++ + +D
Sbjct: 303 EDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQ-IEETTSDYD 361
Query: 393 REKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLY 452
REK QER++KL GGVAV +VGG +E+EV ERKDRV DALNATRAAV+EGIV GGGVAL+
Sbjct: 362 REKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQ 421
Query: 453 ATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDA 512
K LE L N DQ GI II+ AL+AP IA NAG DG+ + GK+ E D FGF+A
Sbjct: 422 GAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNA 481
Query: 513 AKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNSDDKNKPPSRVP 568
EY DM K G+IDP KVVRTAL DAASV+ L TTEA + KP + P
Sbjct: 482 QTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMI------AEKPEPKAP 531
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1MNF|A Chain A, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|B Chain B, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|C Chain C, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|D Chain D, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|E Chain E, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|F Chain F, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|G Chain G, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|H Chain H, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|I Chain I, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|J Chain J, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|K Chain K, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|L Chain L, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|M Chain M, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|N Chain N, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1XCK|A Chain A, Crystal Structure Of Apo Groel
pdb|1XCK|B Chain B, Crystal Structure Of Apo Groel
pdb|1XCK|C Chain C, Crystal Structure Of Apo Groel
pdb|1XCK|D Chain D, Crystal Structure Of Apo Groel
pdb|1XCK|E Chain E, Crystal Structure Of Apo Groel
pdb|1XCK|F Chain F, Crystal Structure Of Apo Groel
pdb|1XCK|G Chain G, Crystal Structure Of Apo Groel
pdb|1XCK|H Chain H, Crystal Structure Of Apo Groel
pdb|1XCK|I Chain I, Crystal Structure Of Apo Groel
pdb|1XCK|J Chain J, Crystal Structure Of Apo Groel
pdb|1XCK|K Chain K, Crystal Structure Of Apo Groel
pdb|1XCK|L Chain L, Crystal Structure Of Apo Groel
pdb|1XCK|M Chain M, Crystal Structure Of Apo Groel
pdb|1XCK|N Chain N, Crystal Structure Of Apo Groel
pdb|2C7C|A Chain A, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|B Chain B, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|C Chain C, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|D Chain D, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|E Chain E, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|F Chain F, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|G Chain G, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|H Chain H, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|I Chain I, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|J Chain J, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|K Chain K, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|L Chain L, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|M Chain M, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|N Chain N, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|A Chain A, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|B Chain B, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|C Chain C, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|D Chain D, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|E Chain E, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|F Chain F, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|G Chain G, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|H Chain H, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|I Chain I, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|J Chain J, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|K Chain K, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|L Chain L, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|M Chain M, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|N Chain N, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2CGT|A Chain A, Groel-Adp-Gp31 Complex
pdb|2CGT|B Chain B, Groel-Adp-Gp31 Complex
pdb|2CGT|C Chain C, Groel-Adp-Gp31 Complex
pdb|2CGT|D Chain D, Groel-Adp-Gp31 Complex
pdb|2CGT|E Chain E, Groel-Adp-Gp31 Complex
pdb|2CGT|F Chain F, Groel-Adp-Gp31 Complex
pdb|2CGT|G Chain G, Groel-Adp-Gp31 Complex
pdb|2CGT|H Chain H, Groel-Adp-Gp31 Complex
pdb|2CGT|I Chain I, Groel-Adp-Gp31 Complex
pdb|2CGT|J Chain J, Groel-Adp-Gp31 Complex
pdb|2CGT|K Chain K, Groel-Adp-Gp31 Complex
pdb|2CGT|L Chain L, Groel-Adp-Gp31 Complex
pdb|2CGT|M Chain M, Groel-Adp-Gp31 Complex
pdb|2CGT|N Chain N, Groel-Adp-Gp31 Complex
pdb|2NWC|A Chain A, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|B Chain B, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|C Chain C, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|D Chain D, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|E Chain E, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|F Chain F, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|G Chain G, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|H Chain H, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|I Chain I, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|J Chain J, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|K Chain K, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|L Chain L, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|M Chain M, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|N Chain N, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|3E76|A Chain A, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|B Chain B, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|C Chain C, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|D Chain D, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|E Chain E, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|F Chain F, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|G Chain G, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|H Chain H, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|I Chain I, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|J Chain J, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|K Chain K, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|L Chain L, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|M Chain M, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|N Chain N, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
Length = 547
Score = 506 bits (1303), Expect = e-143, Method: Compositional matrix adjust.
Identities = 270/521 (51%), Positives = 370/521 (71%), Gaps = 2/521 (0%)
Query: 33 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEF 92
AKD+ FG AR ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VAR IE
Sbjct: 2 AKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
Query: 93 RDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKM 152
DK +++GA +VK+VA N AAGDGTT ATVL QAI+TEG K+VAAG+N MDL+ GI
Sbjct: 62 EDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDK 121
Query: 153 AIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNT 212
A+ A + +LK+ + S + I QV TISAN + +G+L+A AM+KVGKEGVITV DG
Sbjct: 122 AVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 181
Query: 213 MVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVE 272
+ +EL+VV GM+ RGY+SPYF+ P+T ELE+P IL+ DKKIS++ ++ +LE +
Sbjct: 182 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAK 241
Query: 273 KNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIIS 332
+ LLI+AEDVE +ALA L++N VKV A+KAPGFGD R+A L D+A LTGG +IS
Sbjct: 242 AGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVIS 301
Query: 333 EDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFD 392
E+ G+ L+K E LG AK+V ++ D T ++ G G++ I+ R ++ Q + ++ + +D
Sbjct: 302 EEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQ-IEEATSDYD 360
Query: 393 REKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLY 452
REK QER++KL GGVAV KVG A+EVE+ E+K RV DAL+ATRAAVEEG+V GGGVAL+
Sbjct: 361 REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIR 420
Query: 453 ATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDA 512
L +L+ +NEDQ GI + A++AP I N G + S ++ ++ D N+G++A
Sbjct: 421 VASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPS-VVANTVKGGDGNYGYNA 479
Query: 513 AKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATV 553
A EY +M+ GI+DP KV R+AL AASV+ L TTE V
Sbjct: 480 ATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMV 520
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes
pdb|1PCQ|B Chain B, Crystal Structure Of Groel-Groes
pdb|1PCQ|C Chain C, Crystal Structure Of Groel-Groes
pdb|1PCQ|D Chain D, Crystal Structure Of Groel-Groes
pdb|1PCQ|E Chain E, Crystal Structure Of Groel-Groes
pdb|1PCQ|F Chain F, Crystal Structure Of Groel-Groes
pdb|1PCQ|G Chain G, Crystal Structure Of Groel-Groes
pdb|1PCQ|H Chain H, Crystal Structure Of Groel-Groes
pdb|1PCQ|I Chain I, Crystal Structure Of Groel-Groes
pdb|1PCQ|J Chain J, Crystal Structure Of Groel-Groes
pdb|1PCQ|K Chain K, Crystal Structure Of Groel-Groes
pdb|1PCQ|L Chain L, Crystal Structure Of Groel-Groes
pdb|1PCQ|M Chain M, Crystal Structure Of Groel-Groes
pdb|1PCQ|N Chain N, Crystal Structure Of Groel-Groes
pdb|1PF9|A Chain A, Groel-Groes-Adp
pdb|1PF9|B Chain B, Groel-Groes-Adp
pdb|1PF9|C Chain C, Groel-Groes-Adp
pdb|1PF9|D Chain D, Groel-Groes-Adp
pdb|1PF9|E Chain E, Groel-Groes-Adp
pdb|1PF9|F Chain F, Groel-Groes-Adp
pdb|1PF9|G Chain G, Groel-Groes-Adp
pdb|1PF9|H Chain H, Groel-Groes-Adp
pdb|1PF9|I Chain I, Groel-Groes-Adp
pdb|1PF9|J Chain J, Groel-Groes-Adp
pdb|1PF9|K Chain K, Groel-Groes-Adp
pdb|1PF9|L Chain L, Groel-Groes-Adp
pdb|1PF9|M Chain M, Groel-Groes-Adp
pdb|1PF9|N Chain N, Groel-Groes-Adp
pdb|1SVT|A Chain A, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|B Chain B, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|C Chain C, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|D Chain D, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|E Chain E, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|F Chain F, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|G Chain G, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|H Chain H, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|I Chain I, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|J Chain J, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|K Chain K, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|L Chain L, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|M Chain M, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|N Chain N, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|A Chain A, Groel-Groes-Adp7
pdb|1SX4|B Chain B, Groel-Groes-Adp7
pdb|1SX4|C Chain C, Groel-Groes-Adp7
pdb|1SX4|D Chain D, Groel-Groes-Adp7
pdb|1SX4|E Chain E, Groel-Groes-Adp7
pdb|1SX4|F Chain F, Groel-Groes-Adp7
pdb|1SX4|G Chain G, Groel-Groes-Adp7
pdb|1SX4|H Chain H, Groel-Groes-Adp7
pdb|1SX4|I Chain I, Groel-Groes-Adp7
pdb|1SX4|J Chain J, Groel-Groes-Adp7
pdb|1SX4|K Chain K, Groel-Groes-Adp7
pdb|1SX4|L Chain L, Groel-Groes-Adp7
pdb|1SX4|M Chain M, Groel-Groes-Adp7
pdb|1SX4|N Chain N, Groel-Groes-Adp7
pdb|2YNJ|A Chain A, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|B Chain B, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|C Chain C, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|D Chain D, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|E Chain E, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|F Chain F, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|G Chain G, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|H Chain H, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|I Chain I, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|J Chain J, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|K Chain K, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|L Chain L, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|M Chain M, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|N Chain N, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
Length = 524
Score = 506 bits (1302), Expect = e-143, Method: Compositional matrix adjust.
Identities = 270/521 (51%), Positives = 370/521 (71%), Gaps = 2/521 (0%)
Query: 33 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEF 92
AKD+ FG AR ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VAR IE
Sbjct: 2 AKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
Query: 93 RDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKM 152
DK +++GA +VK+VA N AAGDGTT ATVL QAI+TEG K+VAAG+N MDL+ GI
Sbjct: 62 EDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDK 121
Query: 153 AIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNT 212
A+ A + +LK+ + S + I QV TISAN + +G+L+A AM+KVGKEGVITV DG
Sbjct: 122 AVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 181
Query: 213 MVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVE 272
+ +EL+VV GM+ RGY+SPYF+ P+T ELE+P IL+ DKKIS++ ++ +LE +
Sbjct: 182 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAK 241
Query: 273 KNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIIS 332
+ LLI+AEDVE +ALA L++N VKV A+KAPGFGD R+A L D+A LTGG +IS
Sbjct: 242 AGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVIS 301
Query: 333 EDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFD 392
E+ G+ L+K E LG AK+V ++ D T ++ G G++ I+ R ++ Q + ++ + +D
Sbjct: 302 EEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQ-IEEATSDYD 360
Query: 393 REKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLY 452
REK QER++KL GGVAV KVG A+EVE+ E+K RV DAL+ATRAAVEEG+V GGGVAL+
Sbjct: 361 REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIR 420
Query: 453 ATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDA 512
L +L+ +NEDQ GI + A++AP I N G + S ++ ++ D N+G++A
Sbjct: 421 VASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPS-VVANTVKGGDGNYGYNA 479
Query: 513 AKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATV 553
A EY +M+ GI+DP KV R+AL AASV+ L TTE V
Sbjct: 480 ATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMV 520
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|B Chain B, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|C Chain C, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|D Chain D, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|E Chain E, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|F Chain F, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|G Chain G, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|H Chain H, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|I Chain I, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|J Chain J, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|K Chain K, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|L Chain L, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|M Chain M, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|N Chain N, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
Length = 526
Score = 506 bits (1302), Expect = e-143, Method: Compositional matrix adjust.
Identities = 270/521 (51%), Positives = 370/521 (71%), Gaps = 2/521 (0%)
Query: 33 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEF 92
AKD+ FG AR ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VAR IE
Sbjct: 2 AKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
Query: 93 RDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKM 152
DK +++GA +VK+VA N AAGDGTT ATVL QAI+TEG K+VAAG+N MDL+ GI
Sbjct: 62 EDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDK 121
Query: 153 AIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNT 212
A+ A + +LK+ + S + I QV TISAN + +G+L+A AM+KVGKEGVITV DG
Sbjct: 122 AVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 181
Query: 213 MVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVE 272
+ +EL+VV GM+ RGY+SPYF+ P+T ELE+P IL+ DKKIS++ ++ +LE +
Sbjct: 182 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAK 241
Query: 273 KNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIIS 332
+ LLI+AEDVE +ALA L++N VKV A+KAPGFGD R+A L D+A LTGG +IS
Sbjct: 242 AGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVIS 301
Query: 333 EDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFD 392
E+ G+ L+K E LG AK+V ++ D T ++ G G++ I+ R ++ Q + ++ + +D
Sbjct: 302 EEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQ-IEEATSDYD 360
Query: 393 REKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLY 452
REK QER++KL GGVAV KVG A+EVE+ E+K RV DAL+ATRAAVEEG+V GGGVAL+
Sbjct: 361 REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIR 420
Query: 453 ATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDA 512
L +L+ +NEDQ GI + A++AP I N G + S ++ ++ D N+G++A
Sbjct: 421 VASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPS-VVANTVKGGDGNYGYNA 479
Query: 513 AKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATV 553
A EY +M+ GI+DP KV R+AL AASV+ L TTE V
Sbjct: 480 ATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMV 520
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|B Chain B, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|C Chain C, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|D Chain D, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|E Chain E, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|F Chain F, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|G Chain G, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|H Chain H, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|I Chain I, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|J Chain J, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|K Chain K, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|L Chain L, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|M Chain M, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|N Chain N, Crystal Structure Of The Chaperonin Groel-E461k
Length = 548
Score = 506 bits (1302), Expect = e-143, Method: Compositional matrix adjust.
Identities = 269/521 (51%), Positives = 370/521 (71%), Gaps = 2/521 (0%)
Query: 33 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEF 92
AKD+ FG AR ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VAR IE
Sbjct: 3 AKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 62
Query: 93 RDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKM 152
DK +++GA +VK+VA N AAGDGTT ATVL QAI+TEG K+VAAG+N MDL+ GI
Sbjct: 63 EDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDK 122
Query: 153 AIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNT 212
A+ A + +LK+ + S + I QV TISAN + +G+L+A AM+KVGKEGVITV DG
Sbjct: 123 AVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 182
Query: 213 MVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVE 272
+ +EL+VV GM+ RGY+SPYF+ P+T ELE+P IL+ DKKIS++ ++ +LE +
Sbjct: 183 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAK 242
Query: 273 KNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIIS 332
+ LLI+AEDVE +ALA L++N VKV A+KAPGFGD R+A L D+A LTGG +IS
Sbjct: 243 AGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVIS 302
Query: 333 EDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFD 392
E+ G+ L+K E LG AK+V ++ D T ++ G G++ I+ R ++ Q + ++ + +D
Sbjct: 303 EEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQ-IEEATSDYD 361
Query: 393 REKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLY 452
REK QER++KL GGVAV KVG A+EVE+ E+K RV DAL+ATRAAVEEG+V GGGVAL+
Sbjct: 362 REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIR 421
Query: 453 ATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDA 512
L +L+ +NEDQ GI + A++AP I N G + +++ ++ D N+G++A
Sbjct: 422 VASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCG-EKPSVVANTVKGGDGNYGYNA 480
Query: 513 AKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATV 553
A EY +M+ GI+DP KV R+AL AASV+ L TTE V
Sbjct: 481 ATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMV 521
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|B Chain B, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|C Chain C, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|D Chain D, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|E Chain E, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|F Chain F, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|G Chain G, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|H Chain H, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|I Chain I, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|J Chain J, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|K Chain K, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|L Chain L, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|M Chain M, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|N Chain N, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
Length = 524
Score = 504 bits (1297), Expect = e-143, Method: Compositional matrix adjust.
Identities = 269/521 (51%), Positives = 370/521 (71%), Gaps = 2/521 (0%)
Query: 33 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEF 92
AKD+ FG AR ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VAR IE
Sbjct: 2 AKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
Query: 93 RDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKM 152
DK +++GA +VK+VA N AAGDGTT ATVL QAI+TEG K+VAAG+N MDL+ GI
Sbjct: 62 EDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDK 121
Query: 153 AIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNT 212
A+ A + +LK+ + S + I QV TISAN + +G+L+A AM+KVGKEGVITV DG
Sbjct: 122 AVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 181
Query: 213 MVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVE 272
+ +EL+VV GM+ RGY+SPYF+ P+T ELE+P IL+ DKKIS++ ++ +LE +
Sbjct: 182 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAK 241
Query: 273 KNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIIS 332
+ LLI+AEDVE +ALA L++N VKV A+KAPGFGD R+A L D+A LTGG +IS
Sbjct: 242 AGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVIS 301
Query: 333 EDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFD 392
E+ G+ L+K E LG AK+V ++ D T ++ G G++ I+ R ++ Q + ++ + +D
Sbjct: 302 EEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQ-IEEATSDYD 360
Query: 393 REKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLY 452
REK QER++KL GGVAV KVG A+EVE+ E+K RV DAL+ATRAAVEEG+V GGGVAL+
Sbjct: 361 REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIR 420
Query: 453 ATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDA 512
L +L+ +N+DQ GI + A++AP I N G + S ++ ++ D N+G++A
Sbjct: 421 VASKLADLRGQNKDQNVGIKVALRAMEAPLRQIVLNCGEEPS-VVANTVKGGDGNYGYNA 479
Query: 513 AKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATV 553
A EY +M+ GI+DP KV R+AL AASV+ L TTE V
Sbjct: 480 ATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMV 520
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
Length = 548
Score = 502 bits (1293), Expect = e-142, Method: Compositional matrix adjust.
Identities = 269/521 (51%), Positives = 369/521 (70%), Gaps = 2/521 (0%)
Query: 33 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEF 92
AKD+ FG AR ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VAR IE
Sbjct: 3 AKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 62
Query: 93 RDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKM 152
DK +++GA +VK+VA N AAGDGTT ATVL QAI+TEG K+VAAG+N MDL+ GI
Sbjct: 63 EDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDK 122
Query: 153 AIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNT 212
A+ A + +LK+ + S + I QV TISAN + +G+L+A AM+KVGKEGVITV DG
Sbjct: 123 AVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 182
Query: 213 MVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVE 272
+ +EL+VV GM+ RGY+SPYF+ P+T ELE+P IL+ DKKIS++ ++ +LE +
Sbjct: 183 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAK 242
Query: 273 KNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIIS 332
+ LLI+AEDVE +ALA L++N VKV A+KAPGFGD R+A L D+A LTGG +IS
Sbjct: 243 AGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVIS 302
Query: 333 EDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFD 392
E+ G+ L+K E LG AK+V ++ D T ++ G G++ I+ R ++ Q + ++ + +D
Sbjct: 303 EEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQ-IEEATSDYD 361
Query: 393 REKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLY 452
REK QER++KL GGVAV KVG A+EVE+ E+K RV AL+ATRAAVEEG+V GGGVAL+
Sbjct: 362 REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEAALHATRAAVEEGVVAGGGVALIR 421
Query: 453 ATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDA 512
L +L+ +NEDQ GI + A++AP I N G + S ++ ++ D N+G++A
Sbjct: 422 VASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPS-VVANTVKGGDGNYGYNA 480
Query: 513 AKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATV 553
A EY +M+ GI+DP KV R+AL AASV+ L TTE V
Sbjct: 481 ATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMV 521
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|2C7E|A Chain A, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|B Chain B, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|C Chain C, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|D Chain D, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|E Chain E, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|F Chain F, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|G Chain G, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|H Chain H, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|I Chain I, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|J Chain J, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|K Chain K, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|L Chain L, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|M Chain M, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|N Chain N, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
Length = 547
Score = 501 bits (1289), Expect = e-142, Method: Compositional matrix adjust.
Identities = 268/521 (51%), Positives = 368/521 (70%), Gaps = 2/521 (0%)
Query: 33 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEF 92
AKD+ FG A ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VAR IE
Sbjct: 2 AKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
Query: 93 RDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKM 152
DK +++GA +VK+VA N AAGDGTT ATVL QAI+TEG K+VAAG+N MDL+ GI
Sbjct: 62 EDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDK 121
Query: 153 AIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNT 212
A+ + +LK+ + S + I QV TISAN + +G+L+A AM+KVGKEGVITV DG
Sbjct: 122 AVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 181
Query: 213 MVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVE 272
+ +EL+VV GM+ RGY+SPYF+ P+T ELE+P IL+ DKKIS++ ++ +LE +
Sbjct: 182 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAK 241
Query: 273 KNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIIS 332
+ LLI+AEDVE +ALA L++N VKV A+KAPGFGD R+A L D+A LTGG +IS
Sbjct: 242 AGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVIS 301
Query: 333 EDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFD 392
E+ G+ L+K E LG AK+V ++ D T ++ G G++ I+ R ++ Q + ++ + +D
Sbjct: 302 EEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQ-IEEATSDYD 360
Query: 393 REKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLY 452
REK QER++KL GGVAV KVG A+EVE+ E+K RV DAL+ATRAAVEEG+V GGGVAL+
Sbjct: 361 REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIR 420
Query: 453 ATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDA 512
L +L+ +NEDQ GI + A++AP I N G + S ++ ++ D N+G++A
Sbjct: 421 VASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPS-VVANTVKGGDGNYGYNA 479
Query: 513 AKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATV 553
A EY +M+ GI+DP KV R+AL AASV+ L TTE V
Sbjct: 480 ATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMV 520
>pdb|1SS8|A Chain A, Groel
pdb|1SS8|B Chain B, Groel
pdb|1SS8|C Chain C, Groel
pdb|1SS8|D Chain D, Groel
pdb|1SS8|E Chain E, Groel
pdb|1SS8|F Chain F, Groel
pdb|1SS8|G Chain G, Groel
Length = 524
Score = 500 bits (1288), Expect = e-142, Method: Compositional matrix adjust.
Identities = 268/521 (51%), Positives = 368/521 (70%), Gaps = 2/521 (0%)
Query: 33 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEF 92
AKD+ FG A ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VAR IE
Sbjct: 2 AKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
Query: 93 RDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKM 152
DK +++GA +VK+VA N AAGDGTT ATVL QAI+TEG K+VAAG+N MDL+ GI
Sbjct: 62 EDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDK 121
Query: 153 AIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNT 212
A+ + +LK+ + S + I QV TISAN + +G+L+A AM+KVGKEGVITV DG
Sbjct: 122 AVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 181
Query: 213 MVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVE 272
+ +EL+VV GM+ RGY+SPYF+ P+T ELE+P IL+ DKKIS++ ++ +LE +
Sbjct: 182 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAK 241
Query: 273 KNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIIS 332
+ LLI+AEDVE +ALA L++N VKV A+KAPGFGD R+A L D+A LTGG +IS
Sbjct: 242 AGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVIS 301
Query: 333 EDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFD 392
E+ G+ L+K E LG AK+V ++ D T ++ G G++ I+ R ++ Q + ++ + +D
Sbjct: 302 EEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQ-IEEATSDYD 360
Query: 393 REKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLY 452
REK QER++KL GGVAV KVG A+EVE+ E+K RV DAL+ATRAAVEEG+V GGGVAL+
Sbjct: 361 REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIR 420
Query: 453 ATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDA 512
L +L+ +NEDQ GI + A++AP I N G + S ++ ++ D N+G++A
Sbjct: 421 VASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPS-VVANTVKGGDGNYGYNA 479
Query: 513 AKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATV 553
A EY +M+ GI+DP KV R+AL AASV+ L TTE V
Sbjct: 480 ATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMV 520
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14
pdb|1SX3|B Chain B, Groel14-(Atpgammas)14
pdb|1SX3|C Chain C, Groel14-(Atpgammas)14
pdb|1SX3|D Chain D, Groel14-(Atpgammas)14
pdb|1SX3|E Chain E, Groel14-(Atpgammas)14
pdb|1SX3|F Chain F, Groel14-(Atpgammas)14
pdb|1SX3|G Chain G, Groel14-(Atpgammas)14
pdb|1SX3|H Chain H, Groel14-(Atpgammas)14
pdb|1SX3|I Chain I, Groel14-(Atpgammas)14
pdb|1SX3|J Chain J, Groel14-(Atpgammas)14
pdb|1SX3|K Chain K, Groel14-(Atpgammas)14
pdb|1SX3|L Chain L, Groel14-(Atpgammas)14
pdb|1SX3|M Chain M, Groel14-(Atpgammas)14
pdb|1SX3|N Chain N, Groel14-(Atpgammas)14
Length = 525
Score = 500 bits (1288), Expect = e-142, Method: Compositional matrix adjust.
Identities = 268/521 (51%), Positives = 368/521 (70%), Gaps = 2/521 (0%)
Query: 33 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEF 92
AKD+ FG A ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VAR IE
Sbjct: 2 AKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
Query: 93 RDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKM 152
DK +++GA +VK+VA N AAGDGTT ATVL QAI+TEG K+VAAG+N MDL+ GI
Sbjct: 62 EDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDK 121
Query: 153 AIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNT 212
A+ + +LK+ + S + I QV TISAN + +G+L+A AM+KVGKEGVITV DG
Sbjct: 122 AVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 181
Query: 213 MVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVE 272
+ +EL+VV GM+ RGY+SPYF+ P+T ELE+P IL+ DKKIS++ ++ +LE +
Sbjct: 182 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAK 241
Query: 273 KNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIIS 332
+ LLI+AEDVE +ALA L++N VKV A+KAPGFGD R+A L D+A LTGG +IS
Sbjct: 242 AGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVIS 301
Query: 333 EDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFD 392
E+ G+ L+K E LG AK+V ++ D T ++ G G++ I+ R ++ Q + ++ + +D
Sbjct: 302 EEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQ-IEEATSDYD 360
Query: 393 REKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLY 452
REK QER++KL GGVAV KVG A+EVE+ E+K RV DAL+ATRAAVEEG+V GGGVAL+
Sbjct: 361 REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIR 420
Query: 453 ATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDA 512
L +L+ +NEDQ GI + A++AP I N G + S ++ ++ D N+G++A
Sbjct: 421 VASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPS-VVANTVKGGDGNYGYNA 479
Query: 513 AKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATV 553
A EY +M+ GI+DP KV R+AL AASV+ L TTE V
Sbjct: 480 ATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMV 520
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|B Chain B, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|C Chain C, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|D Chain D, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|E Chain E, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|F Chain F, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|G Chain G, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|H Chain H, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|I Chain I, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|J Chain J, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|K Chain K, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|L Chain L, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|M Chain M, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|N Chain N, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|O Chain O, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|P Chain P, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Q Chain Q, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|R Chain R, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|S Chain S, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|T Chain T, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|U Chain U, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|V Chain V, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|W Chain W, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|X Chain X, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Y Chain Y, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Z Chain Z, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|1 Chain 1, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|2 Chain 2, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
Length = 547
Score = 500 bits (1288), Expect = e-142, Method: Compositional matrix adjust.
Identities = 268/521 (51%), Positives = 368/521 (70%), Gaps = 2/521 (0%)
Query: 33 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEF 92
AKD+ FG AR ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VAR IE
Sbjct: 2 AKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
Query: 93 RDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKM 152
DK +++GA +VK+VA N AAGDGTT ATVL QAI+TEG K+VAAG+N MDL+ GI
Sbjct: 62 EDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDK 121
Query: 153 AIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNT 212
A+ A + +LK+ + S + I QV TISAN + +G+L+A AM+KVGKEGVITV DG
Sbjct: 122 AVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 181
Query: 213 MVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVE 272
+ +EL+VV GM+ RGY+SPYF+ P+T ELE+P IL+ DKKIS++ ++ +LE +
Sbjct: 182 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAK 241
Query: 273 KNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIIS 332
+ LLI+AEDVE +ALA L++N VKV A+KAPGFGD R+A L D+A LTGG +IS
Sbjct: 242 AGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVIS 301
Query: 333 EDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFD 392
E+ G+ L+K E LG AK+V ++ D T ++ G G++ I+ R ++ Q + ++ + +D
Sbjct: 302 EEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQ-IEEATSDYD 360
Query: 393 REKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLY 452
REK QER++KL GGVAV KVG A+EVE+ E+K RV AL+ATRAAVEEG+V GGGVAL+
Sbjct: 361 REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEAALHATRAAVEEGVVAGGGVALIR 420
Query: 453 ATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDA 512
L +L+ +N DQ GI + A++AP I N G + S ++ ++ D N+G++A
Sbjct: 421 VASKLADLRGQNADQNVGIKVALRAMEAPLRQIVLNCGEEPS-VVANTVKGGDGNYGYNA 479
Query: 513 AKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATV 553
A EY +M+ GI+DP KV R+AL AASV+ L TTE V
Sbjct: 480 ATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMV 520
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|B Chain B, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|C Chain C, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|D Chain D, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|E Chain E, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|F Chain F, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|G Chain G, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
Length = 548
Score = 498 bits (1283), Expect = e-141, Method: Compositional matrix adjust.
Identities = 267/521 (51%), Positives = 367/521 (70%), Gaps = 2/521 (0%)
Query: 33 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEF 92
AKD+ FG A ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VAR IE
Sbjct: 3 AKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 62
Query: 93 RDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKM 152
DK +++GA +VK+VA N AAGDGTT ATVL QAI+TEG K+VAAG+N MDL+ GI
Sbjct: 63 EDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDK 122
Query: 153 AIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNT 212
A+ + +LK+ + S + I QV TISAN + +G+L+A AM+KVGKEGVITV DG
Sbjct: 123 AVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 182
Query: 213 MVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVE 272
+ +EL+VV GM+ RGY+SPYF+ P+T ELE+P IL+ DKKIS++ ++ +LE +
Sbjct: 183 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAK 242
Query: 273 KNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIIS 332
+ LLI+AEDVE +ALA ++N VKV A+KAPGFGD R+A L D+A LTGG +IS
Sbjct: 243 AGKPLLIIAEDVEGEALATAVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVIS 302
Query: 333 EDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFD 392
E+ G+ L+K E LG AK+V ++ D T ++ G G++ I+ R ++ Q + ++ + +D
Sbjct: 303 EEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQ-IEEATSDYD 361
Query: 393 REKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLY 452
REK QER++KL GGVAV KVG A+EVE+ E+K RV DAL+ATRAAVEEG+V GGGVAL+
Sbjct: 362 REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIR 421
Query: 453 ATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDA 512
L +L+ +NEDQ GI + A++AP I N G + S ++ ++ D N+G++A
Sbjct: 422 VASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPS-VVANTVKGGDGNYGYNA 480
Query: 513 AKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATV 553
A EY +M+ GI+DP KV R+AL AASV+ L TTE V
Sbjct: 481 ATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMV 521
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|B Chain B, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|C Chain C, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|D Chain D, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|E Chain E, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|F Chain F, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|G Chain G, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|H Chain H, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|I Chain I, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|J Chain J, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|K Chain K, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|L Chain L, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|M Chain M, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|N Chain N, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
Length = 547
Score = 498 bits (1283), Expect = e-141, Method: Compositional matrix adjust.
Identities = 267/521 (51%), Positives = 367/521 (70%), Gaps = 2/521 (0%)
Query: 33 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEF 92
AKD+ FG A ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VAR IE
Sbjct: 2 AKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
Query: 93 RDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKM 152
DK +++GA +VK+VA N AAGDGTT ATVL QAI+TEG K+VAAG+N MDL+ GI
Sbjct: 62 EDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDK 121
Query: 153 AIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNT 212
A+ + +LK+ + S + I QV TISAN + +G+L+A AM+KVGKEGVITV DG
Sbjct: 122 AVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 181
Query: 213 MVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVE 272
+ +EL+VV GM+ RGY+SPYF+ P+T ELE+P IL+ DKKIS++ ++ +LE +
Sbjct: 182 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAK 241
Query: 273 KNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIIS 332
+ LLI+AEDVE +ALA L++N VKV A+KAPGFGD R+A L D+A LTGG +IS
Sbjct: 242 AGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVIS 301
Query: 333 EDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFD 392
E+ G+ L+K E LG AK+V ++ D T ++ G G++ I+ R ++ Q + ++ + +D
Sbjct: 302 EEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQ-IEEATSDYD 360
Query: 393 REKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLY 452
REK QER++KL GGVAV KVG A+EVE+ E+K RV DAL+ATRAAVEEG+V GGGVAL+
Sbjct: 361 REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIR 420
Query: 453 ATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDA 512
L +L+ +N DQ GI + A++AP I N G + S ++ ++ D N+G++A
Sbjct: 421 VASKLADLRGQNADQNVGIKVALRAMEAPLRQIVLNCGEEPS-VVANTVKGGDGNYGYNA 479
Query: 513 AKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATV 553
A EY +M+ GI+DP KV R+AL AASV+ L TTE V
Sbjct: 480 ATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMV 520
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|B Chain B, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|C Chain C, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|D Chain D, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|E Chain E, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|F Chain F, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|G Chain G, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
Length = 547
Score = 498 bits (1281), Expect = e-141, Method: Compositional matrix adjust.
Identities = 267/521 (51%), Positives = 367/521 (70%), Gaps = 2/521 (0%)
Query: 33 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEF 92
AKD+ FG A ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VAR IE
Sbjct: 2 AKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
Query: 93 RDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKM 152
DK +++GA +VK+VA N AAGDGTT ATVL QAI+TEG K+VAAG+N MDL+ GI
Sbjct: 62 EDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDK 121
Query: 153 AIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNT 212
A+ + +LK+ + S + I QV TISAN + +G+L+A AM+KVGKEGVITV DG
Sbjct: 122 AVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 181
Query: 213 MVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVE 272
+ +EL+VV GM+ RGY+SPYF+ P+T ELE+P IL+ DKKIS++ ++ +LE +
Sbjct: 182 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAK 241
Query: 273 KNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIIS 332
+ LLI+AEDVE +ALA ++N VKV A+KAPGFGD R+A L D+A LTGG +IS
Sbjct: 242 AGKPLLIIAEDVEGEALATAVVNTIRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVIS 301
Query: 333 EDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFD 392
E+ G+ L+K E LG AK+V ++ D T ++ G G++ I+ R ++ Q + ++ + +D
Sbjct: 302 EEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQ-IEEATSDYD 360
Query: 393 REKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLY 452
REK QER++KL GGVAV KVG A+EVE+ E+K RV DAL+ATRAAVEEG+V GGGVAL+
Sbjct: 361 REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIR 420
Query: 453 ATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDA 512
L +L+ +NEDQ GI + A++AP I N G + S ++ ++ D N+G++A
Sbjct: 421 VASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPS-VVANTVKGGDGNYGYNA 479
Query: 513 AKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATV 553
A EY +M+ GI+DP KV R+AL AASV+ L TTE V
Sbjct: 480 ATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMV 520
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|B Chain B, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|C Chain C, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|D Chain D, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|E Chain E, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|F Chain F, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|G Chain G, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|H Chain H, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|I Chain I, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|J Chain J, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|K Chain K, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|L Chain L, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|M Chain M, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|N Chain N, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
Length = 526
Score = 497 bits (1280), Expect = e-141, Method: Compositional matrix adjust.
Identities = 267/521 (51%), Positives = 367/521 (70%), Gaps = 2/521 (0%)
Query: 33 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEF 92
AKD+ FG A ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VAR IE
Sbjct: 2 AKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIEL 61
Query: 93 RDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKM 152
DK +++GA +VK+VA N AAGDGTT ATVL QAI+TEG K+VAAG+N MDL+ GI
Sbjct: 62 EDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDK 121
Query: 153 AIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNT 212
A+ + +LK+ + S + I QV TISAN + +G+L+A AM+KVGKEGVITV DG
Sbjct: 122 AVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTG 181
Query: 213 MVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVE 272
+ +EL+VV GM+ RGY+SPYF+ P+T ELE+P IL+ DKKIS++ ++ +LE +
Sbjct: 182 LQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAK 241
Query: 273 KNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIIS 332
+ LLI+AEDVE +ALA ++N VKV A+KAPGFGD R+A L D+A LTGG +IS
Sbjct: 242 AGKPLLIIAEDVEGEALATAVVNTIRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVIS 301
Query: 333 EDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFD 392
E+ G+ L+K E LG AK+V ++ D T ++ G G++ I+ R ++ Q + ++ + +D
Sbjct: 302 EEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQ-IEEATSDYD 360
Query: 393 REKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLY 452
REK QER++KL GGVAV KVG A+EVE+ E+K RV DAL+ATRAAVEEG+V GGGVAL+
Sbjct: 361 REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIR 420
Query: 453 ATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDA 512
L +L+ +NEDQ GI + A++AP I N G + S ++ ++ D N+G++A
Sbjct: 421 VASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPS-VVANTVKGGDGNYGYNA 479
Query: 513 AKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATV 553
A EY +M+ GI+DP KV R+AL AASV+ L TTE V
Sbjct: 480 ATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMV 520
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|B Chain B, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|C Chain C, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|D Chain D, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|E Chain E, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|F Chain F, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|G Chain G, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|H Chain H, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|I Chain I, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|J Chain J, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|K Chain K, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|L Chain L, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|M Chain M, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|N Chain N, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|AA Chain a, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|BB Chain b, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|CC Chain c, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|DD Chain d, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|EE Chain e, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|FF Chain f, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|GG Chain g, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|HH Chain h, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|II Chain i, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|JJ Chain j, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|KK Chain k, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|LL Chain l, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|MM Chain m, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|NN Chain n, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 543
Score = 491 bits (1263), Expect = e-139, Method: Compositional matrix adjust.
Identities = 265/536 (49%), Positives = 372/536 (69%), Gaps = 4/536 (0%)
Query: 32 VAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIE 91
+AK + F AR A+ +GV+ VA AVKVT+GP+GRNV++EK G+P +TKDGVTVA+ +E
Sbjct: 1 MAKILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVE 60
Query: 92 FRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIK 151
D +++GA L+K+VA TN AGDGTT ATVL QAI+ EG K+VAAG N + L+ GI+
Sbjct: 61 LEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIE 120
Query: 152 MAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGN 211
A++A + +K+ A + + I +VATISAN + E+G+L+A AMEKVGKEG+ITV +
Sbjct: 121 KAVEAAVEKIKALAIPVEDRKAIEEVATISAN-DPEVGKLIADAMEKVGKEGIITVEESK 179
Query: 212 TMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAV 271
++ EL+ V G + +GYISPYFVT+P+T + LE+ ILI +KK+S++ L+ +LE
Sbjct: 180 SLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVA 239
Query: 272 EKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEII 331
+ + LLI+AEDVE +ALA L++NK + V A+KAPGFGD R+ L D+A +TGG +I
Sbjct: 240 QTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVI 299
Query: 332 SEDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATF 391
SE+ G L+ MLG A++V ++ D+T ++ G G K+ IE R + + + + + +
Sbjct: 300 SEELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGI-KKELETTDSEY 358
Query: 392 DREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALL 451
REK QERL+KL GGVAV +VG A+E E+ E+K R DALNATRAAVEEGIVPGGGV LL
Sbjct: 359 AREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLL 418
Query: 452 YATKALENLKTENE-DQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLL-EQDDVNFG 509
A A+E L + E D+ G I++ AL+ P IA NAG++GS I+ ++L E + +G
Sbjct: 419 RAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYG 478
Query: 510 FDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNSDDKNKPPS 565
F+AA GE+VDMV+AGI+DP KV R+AL +AAS+ L TTEA V + K P+
Sbjct: 479 FNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPEKKESTPA 534
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 456 bits (1172), Expect = e-128, Method: Compositional matrix adjust.
Identities = 255/537 (47%), Positives = 357/537 (66%), Gaps = 7/537 (1%)
Query: 32 VAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIE 91
+AK I + AR + +G++ +A+AVKVT+GPKGRNV++EK G P +T DGV++A+ IE
Sbjct: 1 MAKTIAYDEEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIE 60
Query: 92 FRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIK 151
D + +GA LVK+VA T+ AGDGTT ATVL QA++ EG ++VAAG N + L+ GI+
Sbjct: 61 LEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIE 120
Query: 152 MAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGN 211
A++ V L A+ + T E+I A ISA G++ IG+L+A AM+KVG EGVITV + N
Sbjct: 121 KAVEKVTETLLKGAKEVETKEQIAATAAISA-GDQSIGDLIAEAMDKVGNEGVITVEESN 179
Query: 212 TMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAV 271
T +LE+ GM+ +GYIS YFVTDP+ Q+ LE+P IL+ K+S + L+ LLE +
Sbjct: 180 TFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVI 239
Query: 272 EKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEII 331
+ LLI+AEDVE +AL+ L++NK K A+KAPGFGD R+A L D+AILTGG++I
Sbjct: 240 GAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVI 299
Query: 332 SEDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATF 391
SE+ GLTL+ +LG A+KV V+ D+T ++ G GD I R ++ Q + S + +
Sbjct: 300 SEEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQE-IENSDSDY 358
Query: 392 DREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALL 451
DREK QERL+KL GGVAV K G A+EVE+ ERK R+ DA+ +AAVEEGIV GGGV LL
Sbjct: 359 DREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVTLL 418
Query: 452 YATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFD 511
A L+ LK E D+ G +I++ AL+AP IA N+G + ++ + + G +
Sbjct: 419 QAAPTLDELKLEG-DEATGANIVKVALEAPLKQIAFNSGLE-PGVVAEKVRNLPAGHGLN 476
Query: 512 AAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNSDDKNKPPSRVP 568
A G Y D++ AG+ DP+KV R+AL +AAS++ LF TTEA V +D K + VP
Sbjct: 477 AQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVV---ADKPEKEKASVP 530
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
Length = 504
Score = 416 bits (1068), Expect = e-116, Method: Compositional matrix adjust.
Identities = 234/494 (47%), Positives = 325/494 (65%), Gaps = 7/494 (1%)
Query: 75 GNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGC 134
G P +T DGV++A+ IE D + +GA LVK+VA T+ AGDGTT ATVL QA++ EG
Sbjct: 2 GAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGL 61
Query: 135 KSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLAR 194
++VAAG N + L+ GI+ A++ V L A+ + T E+I A ISA G++ IG+L+A
Sbjct: 62 RNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVETKEQIAATAAISA-GDQSIGDLIAE 120
Query: 195 AMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYD 254
AM+KVG EGVITV + NT +LE+ GM+ +GYIS YFVTDP+ Q+ LE+P IL+
Sbjct: 121 AMDKVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVS 180
Query: 255 KKISDMNSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDN 314
K+S + L+ LLE + + LLI+AEDVE +AL+ L++NK K A+KAPGFGD
Sbjct: 181 SKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDR 240
Query: 315 RRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEE 374
R+A L D+AILTGG++ISE+ GLTL+ +LG A+KV V+ D+T ++ G GD I
Sbjct: 241 RKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAG 300
Query: 375 RCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNAT 434
R ++ Q + S + +DREK QERL+KL GGVAV K G A+EVE+ ERK R+ DA+
Sbjct: 301 RVAQIRQE-IENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNA 359
Query: 435 RAAVEEGIVPGGGVALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGS 494
+AAVEEGIV GGGV LL A L+ LK E D+ G +I++ AL+AP IA N+G +
Sbjct: 360 KAAVEEGIVAGGGVTLLQAAPTLDELKLEG-DEATGANIVKVALEAPLKQIAFNSGLE-P 417
Query: 495 TIIGKLLEQDDVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVL 554
++ + + G +A G Y D++ AG+ DP+KV R+AL +AAS++ LF TTEA V
Sbjct: 418 GVVAEKVRNLPAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVV- 476
Query: 555 VNSDDKNKPPSRVP 568
+D K + VP
Sbjct: 477 --ADKPEKEKASVP 488
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues
188-379
Length = 192
Score = 182 bits (461), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 92/193 (47%), Positives = 134/193 (69%), Gaps = 1/193 (0%)
Query: 218 EVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKNRAL 277
+VV GM+ RGY+SPYF+ P+T ELE+P IL+ DKKIS++ ++ +LE + + L
Sbjct: 1 DVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPL 60
Query: 278 LIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGL 337
LI+AEDVE +ALA L++N VKV A+KAPGFGD R+A L D+A LTGG +ISE+ G+
Sbjct: 61 LIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGM 120
Query: 338 TLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQ 397
L+K E LG AK+V ++ D T ++ G G++ I+ R ++ Q + ++ + +DREK Q
Sbjct: 121 ELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQ-IEEATSDYDREKLQ 179
Query: 398 ERLSKLTGGVAVF 410
ER++KL GGVAV
Sbjct: 180 ERVAKLAGGVAVI 192
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The
Molecular Chaperonin Groel Apical Domain
Length = 193
Score = 179 bits (453), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Query: 222 GMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKNRALLIVA 281
GM+ RGY+SPYF+ P+T + ELE+P IL+ DKKIS++ L+ +LE + + LLI+A
Sbjct: 9 GMQFDRGYLSPYFINKPETGEVELESPFILLVDKKISNIRELLPVLEAVAKAGKPLLIIA 68
Query: 282 EDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDK 341
EDVE +ALA L++N VKV A+KAPGFGD R+A L D+A LTGG +ISE+ G+ L+K
Sbjct: 69 EDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEELGMKLEK 128
Query: 342 VKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLS 401
E LG AK+V ++ D T ++ G G++ I+ R ++ Q + ++ + +DREK QER++
Sbjct: 129 ATLEDLGQAKRVVITKDTTTIIDGVGEEAAIQGRVAQIRQQ-IEEATSDYDREKLQERVA 187
Query: 402 KLTGGV 407
KL GGV
Sbjct: 188 KLAGGV 193
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The
Molecular Chaperonin Groel Apical Domain
Length = 193
Score = 178 bits (452), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Query: 222 GMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKNRALLIVA 281
GM+ RGY+SPYF+ P+T + ELE+P IL+ DKKIS++ L+ +LE + + LLI+A
Sbjct: 9 GMQFDRGYLSPYFINKPETGEVELESPFILLTDKKISNIRELLPVLEAVAKAGKPLLIIA 68
Query: 282 EDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDK 341
EDVE +ALA L++N VKV A+KAPGFGD R+A L D+A LTGG +ISE+ G+ L+K
Sbjct: 69 EDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEELGMKLEK 128
Query: 342 VKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLS 401
E LG AK+V ++ D T ++ G G++ I+ R ++ Q + ++ + +DREK QER++
Sbjct: 129 ATLEDLGQAKRVVITKDTTTIIDGVGEEAAIQGRVAQIRQQ-IEEATSDYDREKLQERVA 187
Query: 402 KLTGGV 407
KL GGV
Sbjct: 188 KLAGGV 193
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising
Residues 191-376, Mutant With Ala 262 Replaced With Leu
And Ile 267 Replaced With Met
Length = 203
Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/186 (47%), Positives = 129/186 (69%), Gaps = 1/186 (0%)
Query: 222 GMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKNRALLIVA 281
GM+ RGY+SPYF+ P+T ELE+P IL+ DKKIS++ ++ +LE + + LLI+A
Sbjct: 19 GMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIA 78
Query: 282 EDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDK 341
EDVE +ALA L++N VKV A+KAPGFGD R+A L D+A LTGG +ISE+ G+ L+K
Sbjct: 79 EDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEK 138
Query: 342 VKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLS 401
E LG AK+V ++ D T ++ G G++ I+ R ++ Q + ++ + +DREK QER++
Sbjct: 139 ATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQ-IEEATSDYDREKLQERVA 197
Query: 402 KLTGGV 407
KL GGV
Sbjct: 198 KLAGGV 203
>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel
From Xenorhapdus Nematophila
Length = 201
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/186 (47%), Positives = 128/186 (68%), Gaps = 1/186 (0%)
Query: 222 GMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKNRALLIVA 281
GM+ RGY+SPYF+ P++ ELENP IL+ DKKIS++ L+ +LE + ++ L+I+A
Sbjct: 14 GMQFDRGYLSPYFINKPESGSVELENPYILLVDKKISNIRELLPVLEGVAKASKPLVIIA 73
Query: 282 EDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDK 341
EDVE +ALA L++N VKV ++KAPGFGD R+A L D+A LT G +ISE+ GL L+K
Sbjct: 74 EDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIGLELEK 133
Query: 342 VKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLS 401
E LG AK+V ++ D T ++ G G++ I R ++ Q + +S + +DREK QER++
Sbjct: 134 ATLEDLGQAKRVVINKDTTTIIDGVGEEGAIAARVTQIRQQ-IEESTSDYDREKLQERVA 192
Query: 402 KLTGGV 407
KL GGV
Sbjct: 193 KLAGGV 198
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1
Apical Domain
Length = 194
Score = 155 bits (391), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 130/194 (67%), Gaps = 1/194 (0%)
Query: 216 ELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKNR 275
ELE G+ +G++S YFVTD Q+ LE+ LIL++ KIS + L+ LLE +
Sbjct: 1 ELEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGK 60
Query: 276 ALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDR 335
LLIVAEDVE +ALA L++N +K A+K P FGD R+A L+DLA++TGG++++ D
Sbjct: 61 PLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDA 120
Query: 336 GLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREK 395
G+ L +V E+LG+A++V VS DDT+++ GGG + + R + + + + KS + +DREK
Sbjct: 121 GMVLREVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANRAKHL-RAEIDKSDSDWDREK 179
Query: 396 AQERLSKLTGGVAV 409
ERL+KL GGVAV
Sbjct: 180 LGERLAKLAGGVAV 193
>pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345
Length = 155
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 107/154 (69%)
Query: 222 GMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKNRALLIVA 281
GM+ RGY+SPYF+ P+T ELE+P IL+ DKKIS++ ++ +LE + + LLI+A
Sbjct: 2 GMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIA 61
Query: 282 EDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDK 341
EDVE +ALA L++N VKV A+KAPGFGD R+A L D+A LTGG +ISE+ G+ L+K
Sbjct: 62 EDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEK 121
Query: 342 VKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEER 375
E LG AK+V ++ D T ++ G G++ I+ R
Sbjct: 122 ATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGR 155
>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel
pdb|1DK7|B Chain B, Crystal Structure Of An Isolated Apical Domain Of Groel
pdb|1DKD|A Chain A, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
pdb|1DKD|B Chain B, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
pdb|1DKD|C Chain C, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
pdb|1DKD|D Chain D, Crystal Structure Of A Groel (Apical Domain) And A
Dodecameric Peptide Complex
Length = 146
Score = 148 bits (374), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 101/144 (70%)
Query: 222 GMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKNRALLIVA 281
GM+ RGY+SPYF+ P+T ELE+P IL+ DKKIS++ ++ +LE + + LLI+A
Sbjct: 2 GMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIA 61
Query: 282 EDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDK 341
EDVE +ALA L++N VKV A+KAPGFGD R+A L D+A LTGG +ISE+ G+ L+K
Sbjct: 62 EDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEK 121
Query: 342 VKEEMLGTAKKVTVSVDDTIVLHG 365
E LG AK+V ++ D T ++ G
Sbjct: 122 ATLEDLGQAKRVVINKDTTTIIDG 145
>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical
Domain) Comprising Residues 192-336
Length = 145
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 99/144 (68%)
Query: 222 GMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKNRALLIVA 281
G + +GYISPYFVT+P+T + LE+ ILI +KK+S++ L+ +LE + + LLI+A
Sbjct: 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIA 60
Query: 282 EDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDK 341
EDVE +ALA L++NK + V A+KAPGFGD R+ L D+A +TGG +ISE+ G L+
Sbjct: 61 EDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLEN 120
Query: 342 VKEEMLGTAKKVTVSVDDTIVLHG 365
MLG A++V ++ D+T ++ G
Sbjct: 121 ATLSMLGRAERVRITKDETTIVGG 144
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 122/540 (22%), Positives = 218/540 (40%), Gaps = 90/540 (16%)
Query: 53 VAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATN 112
+AEAV+ T+GP+G + +I G ++ DG T+ + ++ A A + +A + +
Sbjct: 23 IAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPA----AKTLVDIAKSQD 78
Query: 113 KAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPE 172
GDGTT T+L L + V G++ + + A ++ +K A + +
Sbjct: 79 AEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKED 138
Query: 173 EITQVATISANGEREI-GELLARAMEKVGKEGVITVVDGNTMVNEL-------------- 217
++ Q + + +L+++ K VVD M+++L
Sbjct: 139 KVEQRKLLEKCAMTALSSKLISQQKAFFAK----MVVDAVMMLDDLLQLKMIGIKKVQGG 194
Query: 218 -----EVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVE 272
++V G+ + + F PK + NP+I + + + LEL E
Sbjct: 195 ALEESQLVAGVAFKKTFSYAGFEMQPK----KYHNPMIALLNVE----------LELKAE 240
Query: 273 KNRALLIV--AEDVER--DALAMLILNK----HHAGVKVCAIKAPGFGDNRRANLDDLAI 324
K+ A + V ED + DA ++ +K HH+G KV K P GD D +
Sbjct: 241 KDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLP-IGDVATQYFADRDM 299
Query: 325 LTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVD--DTIVLHGGGDKKLIEERCEEVCQT 382
G + ED +K M+ + SV+ + VL RC+ +T
Sbjct: 300 FCAGRVPEED-------LKRTMMACGGSIQTSVNALSSDVLG----------RCQVFEET 342
Query: 383 AMGKSAATFDREKAQERLSKLTG----GVAVFKVGGASEVEVGERKDRVTDALNATRAAV 438
+G ER + TG + G +E + E + + DA+ R A+
Sbjct: 343 QIGG-----------ERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAI 391
Query: 439 E-EGIVPGGGVALLYATKALENL-KTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTI 496
+ + +V GGG + +K L + +T Q+ I AL+ + NAGFD + I
Sbjct: 392 KNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNI 451
Query: 497 IGKL---LEQDDVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATV 553
+ KL Q + +G D + D +A + +P V AL A+ + L + + T+
Sbjct: 452 LNKLRARHAQGGMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETI 511
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 132/532 (24%), Positives = 232/532 (43%), Gaps = 89/532 (16%)
Query: 53 VAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATN 112
+AE V+ T+GPKG + ++ S+G+ VT DG T+ I+ + A A ++ +VA +
Sbjct: 35 IAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPA----AKMMVEVAKTQD 90
Query: 113 KAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPE 172
K AGDGTT A V+ +L + + + ++ + G +A + L A + +
Sbjct: 91 KEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDD 150
Query: 173 EIT--QVATISANGE--REIGELLAR-AMEKVG----KEGVITVVDGNTM---------V 214
E T ++A S G+ ELLA+ A+E V K+ VVD + + V
Sbjct: 151 EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGV 210
Query: 215 NELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILI----YDKK--ISDMNSLVGLLE 268
E E+V G+ + + + P + K L N + + D K I+ + L+ LE
Sbjct: 211 EESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLE 270
Query: 269 LAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRR---ANLDDLAIL 325
++ + L + + + + ++ + K + + G RR ++++ LA
Sbjct: 271 ---QEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKA 327
Query: 326 TGGEIISEDRGLTLDKVKEEMLGTAKKV---TVSVDDTIVLHGGGDKKLIEERCEEVCQT 382
TG +I++ + LT E LG A+ V ++ ++ I + G + K V
Sbjct: 328 TGAKIVTNVKDLT-----PEDLGYAEVVEERKLAGENMIFVEGCKNPKA-------VTIL 375
Query: 383 AMGKSAATFDR-EKAQERLSKLTGGV----AVFKVGGASEVEVGERKDRVTDALNATRAA 437
G + D E+A E K+ V AV GGA E+E+ R D +
Sbjct: 376 IRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQV------ 429
Query: 438 VEEGIVPGGGVALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTII 497
GG AL A+EN +ALK T+A NAG D ++
Sbjct: 430 -------GGKEAL-----AIENF--------------ADALKIIPKTLAENAGLDTVEML 463
Query: 498 GKLLEQDD---VNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLF 546
K++ + + G D +G+ DM++ GII+PL+V + A+ A+ +++
Sbjct: 464 VKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMI 515
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 129/544 (23%), Positives = 222/544 (40%), Gaps = 104/544 (19%)
Query: 37 NFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKA 96
G+ A+ + + VA +K ++GP+G + I+ G +T DG T+ +E ++
Sbjct: 41 QHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEI 100
Query: 97 KDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDA 156
A L+ Q++ + + GDGTT VL A+L + + + G++ + + +G A
Sbjct: 101 ----AKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKL 156
Query: 157 VISDLKSRAQMIS-TPEEITQVATISANGEREIGELLARAMEKVGK---EGVITVVDGNT 212
IS L+ IS + +E+ + + A +++++ ++ + E VI V+D +
Sbjct: 157 AISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVEAVINVMDKDR 216
Query: 213 MVNELEV------VGG----MKLARGYISPYFVTDPKTQKCELENPLILIYDKKISD--- 259
+ ++ VGG KL G I + P+ KC + K+ SD
Sbjct: 217 KDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKC--------VLPKEGSDGVK 268
Query: 260 MNSLVGLLELAVEKNRALLIVA--------EDVERDALAMLILNKHHAGVKVCAIKAPGF 311
+ L E K + L ++ + E+D +I + AG V I GF
Sbjct: 269 LAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADV-VICQWGF 327
Query: 312 GDNRR----------------ANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTV 355
D L+ +AI T G I+ + L+ DK LGT
Sbjct: 328 DDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDK-----LGT------ 376
Query: 356 SVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGA 415
C + + G T DR E+ SK T V F V G+
Sbjct: 377 --------------------CSRIYEQEFG---TTKDRMLIIEQ-SKETKTVTCF-VRGS 411
Query: 416 SEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTENEDQRRGIHI- 473
+++ V E + + D+L R V++ +V GGG A + + A+ +E D++RGI
Sbjct: 412 NKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAV----SEEADKQRGIDQY 467
Query: 474 ----IQNALKAPTLTIASNAGFDG----STIIGKLLEQDDVNFGFDAAKGEYVDMVKAGI 525
AL +T+A N+G D ST+ K L++ N G D DM + +
Sbjct: 468 AFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGYGSNDMKELFV 527
Query: 526 IDPL 529
+DP
Sbjct: 528 VDPF 531
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 134/566 (23%), Positives = 239/566 (42%), Gaps = 108/566 (19%)
Query: 38 FGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAK 97
+G A A + V V EA+K T GP+G + ++ S+G+ +T DG T+ ++ + A
Sbjct: 27 YGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPA- 85
Query: 98 DVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAV 157
A L+ Q+A ++ DGT A + + ++ + + V+ + SG K A +
Sbjct: 86 ---AKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVA 142
Query: 158 ISDLKSRAQMISTPEE-------ITQVATISANGERE-IGELLARAMEKVGK-EGVITVV 208
+ ++ AQ +S + +T +++ + G RE I +++ +A+ +V + G V
Sbjct: 143 LQTIQELAQTVSINDTDLLRKIAMTSLSSKAVAGAREYIADIVVKAVTQVAELRGDKWYV 202
Query: 209 DGNTM---------VNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDK---- 255
D + + +N+ ++V G+ + + + P PK LEN I + D
Sbjct: 203 DLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGM---PK----RLENAKIALIDASLEV 255
Query: 256 ---------KISDMNSLVGLLE----LAVEKNRALLIVAEDVERDALAMLILNKHHAGVK 302
+I+D + L+ L EK +L +V +I K V
Sbjct: 256 EKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANV-------IICQKGIDEVA 308
Query: 303 VCAIKAPGFGDNRRA---NLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDD 359
+ G RRA +L+ LA TGG ++S +D++ E+ LG A
Sbjct: 309 QSYLAKKGVLAVRRAKKSDLEKLARATGGRVVS-----NIDEISEQDLGYA--------- 354
Query: 360 TIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVE 419
LIEER +G+ F E A+ S +++ GG +
Sbjct: 355 ----------SLIEER-------KVGEDKMVF-VEGAKNPKS-----ISILIRGGLERL- 390
Query: 420 VGERKDRVTDALNATRAAVEEG--IVPGGGVALLYATKALENLKTENEDQRRGIHIIQNA 477
V E + + DAL +++G I GG V + A K + ++ + NA
Sbjct: 391 VDETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLRKYAPQVGGKEQLAVEAYANA 450
Query: 478 LKAPTLTIASNAGFDGSTIIGKLLE----QDDVNFGFDAAKGEYVDMVKAGIIDPLKVVR 533
L++ + NAGFD ++ KL +++ +G D G+ VDM + G+I+P V
Sbjct: 451 LESLVSILIENAGFDPIDLLMKLRSTHENENNKWYGIDLYAGQPVDMWQKGVIEPALVKM 510
Query: 534 TALADAASVSLLFTTTEATVLVNSDD 559
A+ A T AT+++ DD
Sbjct: 511 NAIKAA--------TEAATLVLRIDD 528
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 128/574 (22%), Positives = 239/574 (41%), Gaps = 112/574 (19%)
Query: 39 GVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKD 98
G A+ ++ +A+AV+ T+GPKG + ++ SIG+ ++ DG T+ + ++
Sbjct: 20 GKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPT-- 77
Query: 99 VGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVI 158
A ++ +V+ A + A GDGTT A VL+ +L + + GV+ + +G ++A++
Sbjct: 78 --AKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEAR 135
Query: 159 SDLKSRAQMISTPEEITQVATISANGERE------IGELLARAMEKVGKEGVITVVDGNT 212
+ A+ + + ++A + +G+ + +L+ +A+ V + V DG T
Sbjct: 136 KIIDEIAEKSTDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAE-----VRDGKT 190
Query: 213 M---------------VNELEVVGGMKLARGYIS---PYFVTDPK---------TQKCEL 245
+ VN+ + + G+ + + + P V + K +K E+
Sbjct: 191 IVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEI 250
Query: 246 ENPLILIYDKKISD-MNSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVC 304
E + + KI D +N + VEK +++ +++ K V
Sbjct: 251 EAKVQISDPSKIQDFLNQETNTFKQMVEK----------IKKSGANVVLCQKGIDDVAQH 300
Query: 305 AIKAPGFGDNRR---ANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDDTI 361
+ G RR ++++ LA TG +I+++ LD + +LG A+ V
Sbjct: 301 YLAKEGIYAVRRVKKSDMEKLAKATGAKIVTD-----LDDLTPSVLGEAETVE------- 348
Query: 362 VLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVG 421
++K+ ++R V MG K V++ GG V V
Sbjct: 349 ------ERKIGDDRMTFV----MG---------------CKNPKAVSILIRGGTDHV-VS 382
Query: 422 ERKDRVTDALNATRAAVEEG--IVPGGGVALLYATKALENLKTENEDQRRGIHIIQNALK 479
E + + DA+ E+G + GG V A + + + ++ I AL+
Sbjct: 383 EVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALE 442
Query: 480 APTLTIASNAGFDGSTIIGKLLEQDD---VNFGFDAAKGEYVDMVKAGIIDPLKVVRTAL 536
T+A NAG D + KL D+ ++ G D DM G++DPL+V AL
Sbjct: 443 IIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHAL 502
Query: 537 ADAASVSLLFTTTEATVLVNSDD-----KNKPPS 565
A V AT+++ DD K+ PPS
Sbjct: 503 ESAVEV--------ATMILRIDDVIASKKSTPPS 528
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 132/533 (24%), Positives = 232/533 (43%), Gaps = 91/533 (17%)
Query: 53 VAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATN 112
+AE V+ T+GPKG + ++ S+G+ VT D T+ I+ + A A ++ +VA +
Sbjct: 35 IAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPA----AKMMVEVAKTQD 90
Query: 113 KAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPE 172
K AGDGTT A V+ +L + + + ++ + G +A + L A + +
Sbjct: 91 KEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDD 150
Query: 173 EIT--QVATISANGE--REIGELLAR-AMEKV-----GKEGVITVVDGNTM--------- 213
E T ++A S G+ ELLA+ A+E V K+G VVD + +
Sbjct: 151 EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGK-YVVDLDNIKFEKKAGEG 209
Query: 214 VNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILI----YDKK--ISDMNSLVGLL 267
V E E+V G+ + + + P + K L N + + D K I+ + L+ L
Sbjct: 210 VEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFL 269
Query: 268 ELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRR---ANLDDLAI 324
E ++ + L + + + + ++ + K + + G RR ++++ LA
Sbjct: 270 E---QEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAK 326
Query: 325 LTGGEIISEDRGLTLDKVKEEMLGTAKKV---TVSVDDTIVLHGGGDKKLIEERCEEVCQ 381
TG +I++ + LT E LG A+ V ++ ++ I + G + K V
Sbjct: 327 ATGAKIVTNVKDLT-----PEDLGYAEVVEERKLAGENMIFVEGCKNPKA-------VTI 374
Query: 382 TAMGKSAATFDR-EKAQERLSKLTGGV----AVFKVGGASEVEVGERKDRVTDALNATRA 436
G + D E+A E K+ V AV GGA E+E+ R D +
Sbjct: 375 LIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQV----- 429
Query: 437 AVEEGIVPGGGVALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTI 496
GG AL A+EN +ALK T+A NAG D +
Sbjct: 430 --------GGKEAL-----AIENF--------------ADALKIIPKTLAENAGLDTVEM 462
Query: 497 IGKLLEQDD---VNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLF 546
+ K++ + + G D +G+ DM++ GII+PL+V + A+ A+ +++
Sbjct: 463 LVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMI 515
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 132/533 (24%), Positives = 232/533 (43%), Gaps = 91/533 (17%)
Query: 53 VAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATN 112
+AE V+ T+GPKG + ++ S+G+ VT D T+ I+ + A A ++ +VA +
Sbjct: 35 IAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPA----AKMMVEVAKTQD 90
Query: 113 KAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPE 172
K AGDGTT A V+ +L + + + ++ + G +A + L A + +
Sbjct: 91 KEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAIRVDPDD 150
Query: 173 EIT--QVATISANGE--REIGELLAR-AMEKV-----GKEGVITVVDGNTM--------- 213
E T ++A S G+ ELLA+ A+E V K+G VVD + +
Sbjct: 151 EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGK-YVVDLDNIKFEKKAGEG 209
Query: 214 VNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILI----YDKK--ISDMNSLVGLL 267
V E E+V G+ + + + P + K L N + + D K I+ + L+ L
Sbjct: 210 VEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFL 269
Query: 268 ELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRR---ANLDDLAI 324
E ++ + L + + + + ++ + K + + G RR ++++ LA
Sbjct: 270 E---QEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAK 326
Query: 325 LTGGEIISEDRGLTLDKVKEEMLGTAKKV---TVSVDDTIVLHGGGDKKLIEERCEEVCQ 381
TG +I++ + LT E LG A+ V ++ ++ I + G + K V
Sbjct: 327 ATGAKIVTNVKDLT-----PEDLGYAEVVEERKLAGENMIFVEGCKNPKA-------VTI 374
Query: 382 TAMGKSAATFDR-EKAQERLSKLTGGV----AVFKVGGASEVEVGERKDRVTDALNATRA 436
G + D E+A E K+ V AV GGA E+E+ R D +
Sbjct: 375 LIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQV----- 429
Query: 437 AVEEGIVPGGGVALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTI 496
GG AL A+EN +ALK T+A NAG D +
Sbjct: 430 --------GGKEAL-----AIENF--------------ADALKIIPKTLAENAGLDTVEM 462
Query: 497 IGKLLEQDD---VNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLF 546
+ K++ + + G D +G+ DM++ GII+PL+V + A+ A+ +++
Sbjct: 463 LVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMI 515
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 127/541 (23%), Positives = 219/541 (40%), Gaps = 98/541 (18%)
Query: 42 ARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNP-KVTKDGVTVARSIEFRDKAKDVG 100
AR + G V + VK T+GPKG + +++ + N VT DG T+ +SI + A V
Sbjct: 18 ARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVL 77
Query: 101 ANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSV-AAGVNVMDLRSGI--------- 150
N+ K + GDGTT TVL+ +L E K + + ++ + G
Sbjct: 78 VNISK----VQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALD 133
Query: 151 ---KMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITV 207
K A+D R +I + T + I + + EL A I
Sbjct: 134 ALTKAAVDNSHDKTMFREDLIHIA-KTTLSSKILSQDKDHFAELATNA---------ILR 183
Query: 208 VDGNTMVNELEVVG--GMKLARGYISPYFVTDPK---TQKCELENPLILIYDKKI-SDMN 261
+ G+T + ++++ G KL+ ++ F+ K Q +EN ILI + + +D
Sbjct: 184 LKGSTNLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQPKRIENAKILIANTTLDTDKV 243
Query: 262 SLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGV-----KVCAIKAP------- 309
+ G + V+ A L E ER+ + I G+ + P
Sbjct: 244 KIFG-TKFKVDST-AKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDL 301
Query: 310 GFGDNRRANL---DDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGG 366
G A+ + LA++TGGE++S T D+ + LG
Sbjct: 302 GINSIEHADFEGVERLALVTGGEVVS-----TFDEPSKCKLG------------------ 338
Query: 367 GDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKV-GGASEVEVGERKD 425
C+ + + +G E+ + S G A V GA++ + E +
Sbjct: 339 --------ECDVIEEIMLG--------EQPFLKFSGCKAGEACTIVLRGATDQTLDEAER 382
Query: 426 RVTDALNA-TRAAVEEGIVPGGGVALLYATKALENLKTENEDQRRGIHI--IQNALKAPT 482
+ DAL+ ++ E V GGG A + +KA++ + +N D ++ + + AL+
Sbjct: 383 SLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDT-EAQNIDGKKSLAVEAFARALRQLP 441
Query: 483 LTIASNAGFDGSTIIGKL---LEQDDVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADA 539
+A NAGFD S ++ KL + G D G DM + GI++ K+ R ++ A
Sbjct: 442 TILADNAGFDSSELVSKLRSSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSA 501
Query: 540 A 540
+
Sbjct: 502 S 502
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 121/528 (22%), Positives = 221/528 (41%), Gaps = 82/528 (15%)
Query: 53 VAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATN 112
+AE V+ T+GPKG + ++ +G+ VT DGVT+ R + A A ++ +VA
Sbjct: 25 IAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPA----AKMLIEVAKTQE 80
Query: 113 KAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPE 172
K GDGTT A V+ +L + + + V+ + G + A LK+ A + +
Sbjct: 81 KEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQD 140
Query: 173 E--ITQVATISANG------EREIGELLARAME-------KVGKEGVITVVDGNTMVNEL 217
+ +T++A S G + ++ E++ A+ KV K+ + +++
Sbjct: 141 KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDT 200
Query: 218 EVVGGMKLARGYIS---PYFVTDPKTQKCELENPLILIYDK------KISDMNSLVGLLE 268
E++ G+ + + +S P VTD K L N I I + +I+D L+ +E
Sbjct: 201 ELIKGVLVDKERVSAQMPKKVTDAKIA---LLNCAIEIKETETDAEIRITDPAKLMEFIE 257
Query: 269 LAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRR---ANLDDLAIL 325
++ + L + +++ +L K + + G RR ++++ LA
Sbjct: 258 ---QEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKA 314
Query: 326 TGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMG 385
TG +I+ + L+ + GD L+EER G
Sbjct: 315 TGANVITNIKDLSAQDL------------------------GDAGLVEER------KISG 344
Query: 386 KSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVP 444
S + K + ++ L + G +E + E V DA+ +E+G IV
Sbjct: 345 DSMIFVEECKHPKAVTML--------IRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVS 396
Query: 445 GGG-VALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQ 503
GGG + + K E + + ++ + +AL+ T+A NAG D I+ K+
Sbjct: 397 GGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAA 456
Query: 504 DDVN----FGFDAAKGEYVDMVKAGIIDPLKVVRTALADAA-SVSLLF 546
N G + G DM + G+++PL+V A+ AA S +L
Sbjct: 457 HASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLL 504
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 121/528 (22%), Positives = 221/528 (41%), Gaps = 82/528 (15%)
Query: 53 VAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATN 112
+AE V+ T+GPKG + ++ +G+ VT DGVT+ R + A A ++ +VA
Sbjct: 31 IAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPA----AKMLIEVAKTQE 86
Query: 113 KAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPE 172
K GDGTT A V+ +L + + + V+ + G + A LK+ A + +
Sbjct: 87 KEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQD 146
Query: 173 E--ITQVATISANG------EREIGELLARAME-------KVGKEGVITVVDGNTMVNEL 217
+ +T++A S G + ++ E++ A+ KV K+ + +++
Sbjct: 147 KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDT 206
Query: 218 EVVGGMKLARGYIS---PYFVTDPKTQKCELENPLILIYDK------KISDMNSLVGLLE 268
E++ G+ + + +S P VTD K L N I I + +I+D L+ +E
Sbjct: 207 ELIKGVLVDKERVSAQMPKKVTDAKIA---LLNCAIEIKETETDAEIRITDPAKLMEFIE 263
Query: 269 LAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRR---ANLDDLAIL 325
++ + L + +++ +L K + + G RR ++++ LA
Sbjct: 264 ---QEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKA 320
Query: 326 TGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMG 385
TG +I+ + L+ + GD L+EER G
Sbjct: 321 TGANVITNIKDLSAQDL------------------------GDAGLVEER------KISG 350
Query: 386 KSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVP 444
S + K + ++ L + G +E + E V DA+ +E+G IV
Sbjct: 351 DSMIFVEECKHPKAVTML--------IRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVS 402
Query: 445 GGG-VALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQ 503
GGG + + K E + + ++ + +AL+ T+A NAG D I+ K+
Sbjct: 403 GGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAA 462
Query: 504 DDVN----FGFDAAKGEYVDMVKAGIIDPLKVVRTALADAA-SVSLLF 546
N G + G DM + G+++PL+V A+ AA S +L
Sbjct: 463 HASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLL 510
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 121/528 (22%), Positives = 220/528 (41%), Gaps = 82/528 (15%)
Query: 53 VAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATN 112
+AE V+ T+GPKG + ++ +G+ VT DGVT+ R + A A ++ +VA
Sbjct: 25 IAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPA----AKMLIEVAKTQE 80
Query: 113 KAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPE 172
K GDGTT A V+ +L + + + V+ + G + A LK+ A + +
Sbjct: 81 KEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQD 140
Query: 173 E--ITQVATISANG------EREIGELLARAME-------KVGKEGVITVVDGNTMVNEL 217
+ +T++A S G + ++ E++ A+ KV K+ + +++
Sbjct: 141 KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDT 200
Query: 218 EVVGGMKLARGYIS---PYFVTDPKTQKCELENPLILIYDK------KISDMNSLVGLLE 268
E++ G+ + + +S P VTD K L N I I + +I+D L+ +E
Sbjct: 201 ELIKGVLVDKERVSAQMPKKVTDAKIA---LLNCAIEIKETETDAEIRITDPAKLMEFIE 257
Query: 269 LAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRR---ANLDDLAIL 325
++ + L + +++ +L K + + G RR ++++ LA
Sbjct: 258 ---QEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKA 314
Query: 326 TGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMG 385
TG +I+ L+ + GD L+EER G
Sbjct: 315 TGANVIAAIAALSAQDL------------------------GDAGLVEER------KISG 344
Query: 386 KSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVP 444
S + K + ++ L + G +E + E V DA+ +E+G IV
Sbjct: 345 DSMIFVEECKHPKAVTML--------IRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVS 396
Query: 445 GGG-VALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQ 503
GGG + + K E + + ++ + +AL+ T+A NAG D I+ K+
Sbjct: 397 GGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAA 456
Query: 504 DDVN----FGFDAAKGEYVDMVKAGIIDPLKVVRTALADAA-SVSLLF 546
N G + G DM + G+++PL+V A+ AA S +L
Sbjct: 457 HASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLL 504
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 121/528 (22%), Positives = 220/528 (41%), Gaps = 82/528 (15%)
Query: 53 VAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATN 112
+AE V+ T+GPKG + ++ +G+ VT DGVT+ R + A A ++ +VA
Sbjct: 31 IAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPA----AKMLIEVAKTQE 86
Query: 113 KAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPE 172
K GDGTT A V+ +L + + + V+ + G + A LK+ A + +
Sbjct: 87 KEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQD 146
Query: 173 E--ITQVATISANG------EREIGELLARAME-------KVGKEGVITVVDGNTMVNEL 217
+ +T++A S G + ++ E++ A+ KV K+ + +++
Sbjct: 147 KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDT 206
Query: 218 EVVGGMKLARGYIS---PYFVTDPKTQKCELENPLILIYDK------KISDMNSLVGLLE 268
E++ G+ + + +S P VTD K L N I I + +I+D L+ +E
Sbjct: 207 ELIKGVLVDKERVSAQMPKKVTDAKIA---LLNCAIEIKETETDAEIRITDPAKLMEFIE 263
Query: 269 LAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRR---ANLDDLAIL 325
++ + L + +++ +L K + + G RR ++++ LA
Sbjct: 264 ---QEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKA 320
Query: 326 TGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMG 385
TG +I+ L+ + GD L+EER G
Sbjct: 321 TGANVIAAIAALSAQDL------------------------GDAGLVEER------KISG 350
Query: 386 KSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVP 444
S + K + ++ L + G +E + E V DA+ +E+G IV
Sbjct: 351 DSMIFVEECKHPKAVTML--------IRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVS 402
Query: 445 GGG-VALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQ 503
GGG + + K E + + ++ + +AL+ T+A NAG D I+ K+
Sbjct: 403 GGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAA 462
Query: 504 DDVN----FGFDAAKGEYVDMVKAGIIDPLKVVRTALADAA-SVSLLF 546
N G + G DM + G+++PL+V A+ AA S +L
Sbjct: 463 HASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLL 510
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 119/546 (21%), Positives = 239/546 (43%), Gaps = 112/546 (20%)
Query: 43 RAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGAN 102
R + + VA+A++ ++GPKG + +I+ G+ +T DG T+ + ++ A A
Sbjct: 13 RFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPA----AR 68
Query: 103 LVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDA---VIS 159
++ +++ A + AGDGTT ++ ++L K + G++ + + A++ +++
Sbjct: 69 MLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILT 128
Query: 160 DLKSRAQMISTPEEITQVATISANGE--REIGELLAR----AMEKVGKEGVITVVD---- 209
D+ SR +S E + A S N + + LL+ A+ KV T VD
Sbjct: 129 DM-SRPVELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDI 187
Query: 210 ------GNTMVNELEVVGGMKLAR---------------GYISPYFVTDPKTQKCELENP 248
G T +++ E+V G+ L + G I + ++ PKT +++N
Sbjct: 188 KIVKKLGGT-IDDCELVEGLVLTQKVANSGITRVEKAKIGLIQ-FCLSAPKT---DMDNQ 242
Query: 249 LILI----YDKKISDMNSLVGLLELAVEKNRA-LLIVAEDVERDA---LAMLILNKHHAG 300
+++ D+ + + + + L ++K +L++ + + RDA LA+ LNK
Sbjct: 243 IVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNK---- 298
Query: 301 VKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDDT 360
+K+ +K D R +++ + G + ++ +D+ +MLG+A
Sbjct: 299 MKIMVVK-----DIEREDIEFICKTIGTKPVAH-----VDQFTADMLGSA---------- 338
Query: 361 IVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFK-----VGGA 415
E EEV GK L K+TG + K V G+
Sbjct: 339 -------------ELAEEVSLNGSGK-------------LIKITGCASPGKTVTIVVRGS 372
Query: 416 SEVEVGERKDRVTDALNATRAAVEE-GIVPGGGVA-LLYATKALENLKTENEDQRRGIHI 473
+++ + E + + DAL R V++ ++ GGG + A + E +T + + I
Sbjct: 373 NKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIRA 432
Query: 474 IQNALKAPTLTIASNAGFDGSTIIGKLLE---QDDVNFGFDAAKGEYVDMVKAGIIDPLK 530
+A++ T+A NAG + + + +L Q + G + KG ++++ ++ PL
Sbjct: 433 FADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGGISNILEELVVQPLL 492
Query: 531 VVRTAL 536
V +AL
Sbjct: 493 VSVSAL 498
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 119/525 (22%), Positives = 215/525 (40%), Gaps = 98/525 (18%)
Query: 53 VAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATN 112
+AE V+ T+GPKG + ++ +G+ VT DGVT+ R + A A ++ +VA
Sbjct: 31 IAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPA----AKMLIEVAKTQE 86
Query: 113 KAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPE 172
K GDGTT A V+ +L + + + V+ + G + A LK+ A + +
Sbjct: 87 KEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQD 146
Query: 173 E--ITQVATISANG------EREIGELLARAME-------KVGKEGVITVVDGNTMVNEL 217
+ +T++A S G + ++ E++ A+ KV K+ + +++
Sbjct: 147 KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDT 206
Query: 218 EVVGGMKLARGYIS---PYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKN 274
E++ G+ + + +S P VTD K + LL A+E+
Sbjct: 207 ELIKGVLVDKERVSAQMPKKVTDAK------------------------IALLNCAIEET 242
Query: 275 RALLI---VAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRR---ANLDDLAILTGG 328
+ ++ VAE ++ +L K + + G RR ++++ LA TG
Sbjct: 243 ASEMLKDMVAE-IKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGA 301
Query: 329 EIISEDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSA 388
+I+ + L+ + GD L+EER G S
Sbjct: 302 NVITNIKDLSAQDL------------------------GDAGLVEER------KISGDSM 331
Query: 389 ATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGG 447
+ K + ++ L + G +E + E V DA+ +E+G IV GGG
Sbjct: 332 IFVEECKHPKAVTML--------IRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGG 383
Query: 448 -VALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDV 506
+ + K E + + ++ + +AL+ T+A NAG D I+ K+
Sbjct: 384 STEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHAS 443
Query: 507 N----FGFDAAKGEYVDMVKAGIIDPLKVVRTALADAA-SVSLLF 546
N G + G DM + G+++PL+V A+ AA S +L
Sbjct: 444 NGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLL 488
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 119/525 (22%), Positives = 215/525 (40%), Gaps = 98/525 (18%)
Query: 53 VAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATN 112
+AE V+ T+GPKG + ++ +G+ VT DGVT+ R + A A ++ +VA
Sbjct: 25 IAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPA----AKMLIEVAKTQE 80
Query: 113 KAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPE 172
K GDGTT A V+ +L + + + V+ + G + A LK+ A + +
Sbjct: 81 KEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQD 140
Query: 173 E--ITQVATISANG------EREIGELLARAME-------KVGKEGVITVVDGNTMVNEL 217
+ +T++A S G + ++ E++ A+ KV K+ + +++
Sbjct: 141 KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDT 200
Query: 218 EVVGGMKLARGYIS---PYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKN 274
E++ G+ + + +S P VTD K + LL A+E+
Sbjct: 201 ELIKGVLVDKERVSAQMPKKVTDAK------------------------IALLNCAIEET 236
Query: 275 RALLI---VAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRR---ANLDDLAILTGG 328
+ ++ VAE ++ +L K + + G RR ++++ LA TG
Sbjct: 237 ASEMLKDMVAE-IKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGA 295
Query: 329 EIISEDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSA 388
+I+ + L+ + GD L+EER G S
Sbjct: 296 NVITNIKDLSAQDL------------------------GDAGLVEER------KISGDSM 325
Query: 389 ATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGG 447
+ K + ++ L + G +E + E V DA+ +E+G IV GGG
Sbjct: 326 IFVEECKHPKAVTML--------IRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGG 377
Query: 448 -VALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDV 506
+ + K E + + ++ + +AL+ T+A NAG D I+ K+
Sbjct: 378 STEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHAS 437
Query: 507 N----FGFDAAKGEYVDMVKAGIIDPLKVVRTALADAA-SVSLLF 546
N G + G DM + G+++PL+V A+ AA S +L
Sbjct: 438 NGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLL 482
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 119/525 (22%), Positives = 214/525 (40%), Gaps = 98/525 (18%)
Query: 53 VAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATN 112
+AE V+ T+GPKG + ++ +G+ VT DGVT+ R + A A ++ +VA
Sbjct: 25 IAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPA----AKMLIEVAKTQE 80
Query: 113 KAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPE 172
K GDGTT A V+ +L + + + V+ + G + A LK+ A + +
Sbjct: 81 KEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQD 140
Query: 173 E--ITQVATISANG------EREIGELLARAME-------KVGKEGVITVVDGNTMVNEL 217
+ +T++A S G + ++ E++ A+ KV K+ + +++
Sbjct: 141 KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDT 200
Query: 218 EVVGGMKLARGYIS---PYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKN 274
E++ G+ + + +S P VTD K + LL A+E+
Sbjct: 201 ELIKGVLVDKERVSAQMPKKVTDAK------------------------IALLNCAIEET 236
Query: 275 RALLI---VAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRR---ANLDDLAILTGG 328
+ ++ VAE ++ +L K + + G RR ++++ LA TG
Sbjct: 237 ASEMLKDMVAE-IKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGA 295
Query: 329 EIISEDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSA 388
+I+ L+ + GD L+EER G S
Sbjct: 296 NVIAAIAALSAQDL------------------------GDAGLVEER------KISGDSM 325
Query: 389 ATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGG 447
+ K + ++ L + G +E + E V DA+ +E+G IV GGG
Sbjct: 326 IFVEECKHPKAVTML--------IRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGG 377
Query: 448 -VALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDV 506
+ + K E + + ++ + +AL+ T+A NAG D I+ K+
Sbjct: 378 STEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHAS 437
Query: 507 N----FGFDAAKGEYVDMVKAGIIDPLKVVRTALADAA-SVSLLF 546
N G + G DM + G+++PL+V A+ AA S +L
Sbjct: 438 NGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLL 482
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 119/520 (22%), Positives = 220/520 (42%), Gaps = 49/520 (9%)
Query: 73 SIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTE 132
S+G+ +T DG T+ + ++ + A A ++ +V+ + GDGTT A VL+ +L++
Sbjct: 5 SMGDIVITNDGATILKEMDIQHPA----AKMIVEVSKTQDAEVGDGTTTAAVLSGELLSK 60
Query: 133 GCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEE--ITQVA--TISANGEREI 188
+ + GV+ + G + A + L++ IS +E + ++A I+ G
Sbjct: 61 AEELIMKGVHSTIISEGYRHAAEKCREILETITIAISPDDEAALIKIAGTAITGKGAEAY 120
Query: 189 GELLARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENP 248
E L+ K + V DG VN LE + K A G I + D E +P
Sbjct: 121 KEKLSALTVKAVRSIVEEEEDG-LKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHP 179
Query: 249 LILIYDKKISDMNSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKA 308
+ +K+ N+ + LL VE + + + L L++ ++ A K
Sbjct: 180 NM---PEKVE--NAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKV 234
Query: 309 PGFGDNR---RANLDDLAILTGGEIISEDRGL-TLDKVKEEMLGTAKKVTVSVDDTIVLH 364
G N + +DD+A + E G+ + +VK+ L KVT + TI+
Sbjct: 235 IASGANVVFCQKGIDDMA-----QYYIEKAGIYAVRRVKKSDLKRLSKVTGA---TII-- 284
Query: 365 GGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTG-----GVAVFKVGGASEVE 419
+ +++ +G + ++E +++ +TG V V GG V
Sbjct: 285 ---------QDLDQITTEDVGTAGLVEEKEVRGGKMTYVTGCQNSKAVTVLLHGGTEHV- 334
Query: 420 VGERKDRVTDALNATRAAVEEG--IVPGGGVALLYATKALENLKTENEDQRRGIHIIQNA 477
V + DAL+ +E+G +V GG + + + E T ++ + A
Sbjct: 335 VDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYASTLKGREQLAVSKFAEA 394
Query: 478 LKAPTLTIASNAGFDGSTIIGKLLEQDD---VNFGFDAAKGEYVDMVKAGIIDPLKVVRT 534
L+ + +A NAG D I+ +L Q + N G + GE VDM + +I+PL++
Sbjct: 395 LEVIPVALAENAGLDPIDIMVELRSQHEKGNKNAGLNVYTGEVVDMWENDVIEPLRIKTQ 454
Query: 535 ALADAASVSLLFTTTEATVLVN-SDDKNKPPSRVPNMDGL 573
A+ A +++ + V S ++ P +P+M L
Sbjct: 455 AINAAMEATVMILRIDDVVASKGSANQGMGPGGLPDMPDL 494
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 118/525 (22%), Positives = 214/525 (40%), Gaps = 98/525 (18%)
Query: 53 VAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATN 112
+AE V+ T+GPKG + ++ +G+ VT DGVT+ R + A A ++ +VA
Sbjct: 25 IAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPA----AKMLIEVAKTQE 80
Query: 113 KAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPE 172
K GDGTT A V+ +L + + + V+ + G + A LK+ A + +
Sbjct: 81 KEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQD 140
Query: 173 E--ITQVATISANG------EREIGELLARAME-------KVGKEGVITVVDGNTMVNEL 217
+ +T++A S G + ++ E++ A+ KV K+ + +++
Sbjct: 141 KEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDT 200
Query: 218 EVVGGMKLARGYIS---PYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKN 274
E++ G+ + + +S P VTD K + LL A+E+
Sbjct: 201 ELIKGVLVDKERVSAQMPKKVTDAK------------------------IALLNCAIEET 236
Query: 275 RALLI---VAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRR---ANLDDLAILTGG 328
+ ++ VAE ++ +L K + + G RR ++++ LA TG
Sbjct: 237 ASEMLKDMVAE-IKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGA 295
Query: 329 EIISEDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSA 388
+I+ + L+ + GD L+EER G S
Sbjct: 296 NVITNIKDLSAQDL------------------------GDAGLVEER------KISGDSM 325
Query: 389 ATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGG 447
+ K + ++ L + G +E + E V A+ +E+G IV GGG
Sbjct: 326 IFVEECKHPKAVTML--------IRGTTEHVIEEVARAVDAAVGVVGCTIEDGRIVSGGG 377
Query: 448 -VALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDV 506
+ + K E + + ++ + +AL+ T+A NAG D I+ K+
Sbjct: 378 STEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHAS 437
Query: 507 N----FGFDAAKGEYVDMVKAGIIDPLKVVRTALADAA-SVSLLF 546
N G + G DM + G+++PL+V A+ AA S +L
Sbjct: 438 NGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLL 482
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 114/539 (21%), Positives = 220/539 (40%), Gaps = 84/539 (15%)
Query: 48 QGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQV 107
+G+ V E +GPKG ++ GN K+TKDG + ++ + A L+ +
Sbjct: 27 EGLQSVLET---NLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPT----AVLIARA 79
Query: 108 AGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLK----S 163
A A ++ GDGTT L +L + + + GV+ + G ++A + L S
Sbjct: 80 AAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKIS 139
Query: 164 RAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELEVVGGM 223
+ + + E + QVA S ++ L + + + V++V D +L +V M
Sbjct: 140 KTNLSNDREFLLQVARSSL--LTKVDADLTEVLTPIVTDAVLSVYDAQADNLDLHMVEIM 197
Query: 224 KLARGYISPYFVTDPKTQKCELENPLILIYDKKISDM-----NSLVGLLELAVEK----- 273
++ ++SP T K L+L + + DM N+ V +L +++E
Sbjct: 198 QMQ--HLSPKDTTFIKG--------LVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEV 247
Query: 274 NRALLIVAEDVERDALAMLILNKHHAGVK--------VCAIKA-PGFGDNRRANLDDLAI 324
N + D +RD LA A +K VC + GF + +D +++
Sbjct: 248 NSGFFYSSAD-QRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSL 306
Query: 325 LTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAM 384
++ ++ L L + K + + VT GG+ + E++ +
Sbjct: 307 ----DVFAKHNILALRRAKRRNMERLQLVT-----------GGEA---QNSVEDLSPQIL 348
Query: 385 GKSAATFDREKAQERLSKLTGGV----AVFKVGGASEVEVGERKDRVTDALNATRAAV-E 439
G S + +E+ + +T + G++ + + KD V D L A + +
Sbjct: 349 GFSGLVYQETIGEEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKD 408
Query: 440 EGIVPGGGVALLYATKALENLKTENEDQ-------RRGIHIIQNALKAPTLTIASNAGFD 492
+ I+PG G + ++ L++ N ++ + GI AL T+ N+GFD
Sbjct: 409 KNIIPGAGAFYIALSRY---LRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFD 465
Query: 493 GSTIIGKLLEQ-------DDVNF-GFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVS 543
++ + ++ D+ + G D G+ D GI D +V+R A+ A ++
Sbjct: 466 PLDVLAMVEDELDDAQDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIA 524
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 113/499 (22%), Positives = 190/499 (38%), Gaps = 81/499 (16%)
Query: 35 DINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRD 94
D + G G + + V EA+K T+GP G +++I S ++ DG T+ + ++
Sbjct: 18 DASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVH 77
Query: 95 KAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAI 154
A A + ++ A + GDGTT T+L ++ E + G++ + G + A+
Sbjct: 78 PA----AKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAV 133
Query: 155 DAVISDLKSRAQMI----STPEEITQVATISANGEREIGELLARAMEKVGKEGVITV--- 207
+ + A I S+ E+ + +A + I A K+ + V+++
Sbjct: 134 SLAVEKINELAVDITSEKSSGRELLERCARTAMSSKLIHNN-ADFFVKMCVDAVLSLDRN 192
Query: 208 -----------VDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKK 256
+ G M L + G+ + + F PK + NP IL
Sbjct: 193 DLDDKLIGIKKIPGGAMEESL-FINGVAFKKTFSYAGFEQQPK----KFNNPKIL----- 242
Query: 257 ISDMNSLVGLLELAVEKNRALLIV--AEDVER--DALAMLILNK----HHAGVKVCAIKA 308
SL LEL EK+ A + V ED + DA LI K G + K
Sbjct: 243 -----SLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKL 297
Query: 309 PGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGD 368
P GD D I G + ++D + V GG
Sbjct: 298 P-IGDLATQFFADRNIFCAGRVSADDMNRVIQAV----------------------GGS- 333
Query: 369 KKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTG-----GVAVFKVGGASEVEVGER 423
I+ ++ +G A + + ER + G + GGA +V + E
Sbjct: 334 ---IQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQAKTCTLLLRGGAEQV-IAEV 389
Query: 424 KDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENL-KTENEDQRRGIHIIQNALKAP 481
+ + DA+ + A++ IV GGG + +K L + KT Q+ I+ AL+
Sbjct: 390 ERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVI 449
Query: 482 TLTIASNAGFDGSTIIGKL 500
+ NAGFD I+ KL
Sbjct: 450 PRQLCENAGFDAIEILNKL 468
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 125/533 (23%), Positives = 211/533 (39%), Gaps = 82/533 (15%)
Query: 42 ARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPK--VTKDGVTVARSIEFRDKAKDV 99
AR + G + + VK T+GPKG + I+ S + VT DG T+ ++I + A V
Sbjct: 11 ARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKV 70
Query: 100 GANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVIS 159
++ + + GDGTT TVL +L E +A ++ + +G + A A
Sbjct: 71 LVDMSR----VQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQ 126
Query: 160 DLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVV----DGNT-MV 214
L + A + E + ++ G +LL + K V V+ GN +
Sbjct: 127 ALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSGNLEAI 186
Query: 215 NELEVVGGMKLARGYISPYFVTDPK---TQKCELENPLILIYDKKIS------------- 258
+ ++ +GG LA Y+ F+ D K Q +EN ILI + +
Sbjct: 187 HVIKKLGG-SLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRV 245
Query: 259 DMNSLVGLLELAVEKNRALL---IVAEDVERDALAMLILN---KHHAGVKVCAIKAPGFG 312
D + V +E A ++ I+ + LI N + V AI+ F
Sbjct: 246 DSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADF- 304
Query: 313 DNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLI 372
++ LA++TGGEI S T D + LG+ K +++ ++ G+ KLI
Sbjct: 305 ----VGVERLALVTGGEIAS-----TFDHPELVKLGSCKL----IEEVMI----GEDKLI 347
Query: 373 EERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALN 432
A+G++ R GA++ + E + + DAL
Sbjct: 348 -----HFSGVALGEACTIVLR--------------------GATQQILDEAERSLHDALC 382
Query: 433 ATRAAVEEG-IVPGGGVALLYATKALENLKTENEDQRR-GIHIIQNALKAPTLTIASNAG 490
V++ V GGG + + A+ L + + + AL+ IA NAG
Sbjct: 383 VLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAG 442
Query: 491 FDGSTIIGKL---LEQDDVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAA 540
+D + ++ +L + G D +G DM GI + +V R L AA
Sbjct: 443 YDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAA 495
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|L Chain L, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|DD Chain d, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|LL Chain l, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|D Chain D, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|L Chain L, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|DD Chain d, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|LL Chain l, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 528
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 13/135 (9%)
Query: 43 RAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGAN 102
R A + VA+A++ ++GPKG + +I+ S G ++ DG T+ + + A
Sbjct: 21 RKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPV----AR 76
Query: 103 LVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVN---VMD-LRSGIKMAIDAVI 158
++ +V+ A + AGDGTT +LT A+L + + G++ + D +S K ++D ++
Sbjct: 77 MLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILL 136
Query: 159 S-----DLKSRAQMI 168
L R Q++
Sbjct: 137 EMCHKVSLSDREQLV 151
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Query: 412 VGGASEVEVGERKDRVTDALNATRAAVEE-GIVPGGGVALLYATKALENLKTENEDQRRG 470
+ GA+ + + E + + DAL R V+E G++ GGG + ++ L E +
Sbjct: 379 IRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEARSMEGVQAF 438
Query: 471 I-HIIQNALKAPTLTIASNAGFDGSTIIGKL---LEQDDVNFGFDAAKGEYVDMVKAGII 526
I +AL+ T+A NAG + ++ +L E ++N G + + + I+
Sbjct: 439 IWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHENGELNDGISVRRSGTTNTYEEHIL 498
Query: 527 DPLKVVRTALADAA 540
P+ V +A+ A+
Sbjct: 499 QPVLVSTSAITLAS 512
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 130/587 (22%), Positives = 222/587 (37%), Gaps = 140/587 (23%)
Query: 38 FGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAK 97
G+ A + + VA +K ++GP G + ++ G+ VT DG T+ ++ +
Sbjct: 7 MGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQI- 65
Query: 98 DVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAI--- 154
A L+ +++ + + GDGTT VL A+L E + + G++ + + G + A
Sbjct: 66 ---AKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIA 122
Query: 155 --------DAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVIT 206
D+V+ D+K+ +I T + T + + N R M ++ V+T
Sbjct: 123 IEHLDKISDSVLVDMKNTEPLIQTAK--TTLGSKVVNS-------CHRQMAEIAVNAVLT 173
Query: 207 VVDGNTMVNELEV------VGG----MKLARGYISPYFVTDPKTQK-----------CEL 245
V D + E+ VGG KL +G I + P+ K C
Sbjct: 174 VADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPF 233
Query: 246 ENPLILIYDKKISDMNSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCA 305
E P K D+ S VE +AL + E++ +I G + A
Sbjct: 234 EPPKPKTKHK--LDVTS--------VEDFKAL----QKYEKEKFEEMIRQIKETGANL-A 278
Query: 306 IKAPGFGD--NRRANLDDL--------------AILTGGEIISEDRGLTLDK------VK 343
+ GF D N +DL AI TGG I+ LT +K VK
Sbjct: 279 VCQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVK 338
Query: 344 EEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKL 403
E GT K DK L+ E+C K
Sbjct: 339 EISFGTTK----------------DKMLVIEQC-------------------------KN 357
Query: 404 TGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKAL--ENL 460
+ V +F + G +++ + E K + DAL R + + +V GGG A + A+ E
Sbjct: 358 SRAVTIF-IRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEAD 416
Query: 461 KTENEDQRRGIHIIQNALKAPTLTIASNAGFDG----STIIGKLLEQDDVNFGFDAAKGE 516
K +Q + +AL+ + +A N+G + + + + +++ + G D
Sbjct: 417 KCPTLEQ-YAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKG 475
Query: 517 YVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNSDDKNKP 563
DM +I+ T + +SL T +++ DD KP
Sbjct: 476 TNDMKHQHVIE------TLIGKKQQISL--ATQMVRMILKIDDIRKP 514
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 36/215 (16%)
Query: 376 CEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATR 435
C+EV Q + ++ S + + GA++ + E + + D+L+ +
Sbjct: 358 CDEVVQAKFSDDECILIKGTSKHSSSSII-------LRGANDYSLDEMERSLHDSLSVVK 410
Query: 436 AAVEEG-IVPGGGVALLYATKALENLKTE-NEDQRRGIHIIQNALKAPTLTIASNAGFDG 493
+E G +VPGGG L+N T ++ I AL T+A NA D
Sbjct: 411 RTLESGNVVPGGGCVEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDS 470
Query: 494 STIIGKL---------LEQDDV------NFGFDAAKGEYVDMVKAGIIDP----LKVVRT 534
S ++ KL + +DV N+G D +G+ VD + AG+++P +K +++
Sbjct: 471 SELVAKLRSYHAASQMAKPEDVKRRSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKS 530
Query: 535 ALADAASVSLLFTTTEATVLVNSDDKNKPPSRVPN 569
AL A V++L T TV +PP P+
Sbjct: 531 AL--EACVAILRIDTMITV------DPEPPKEDPH 557
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 31/155 (20%)
Query: 53 VAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATN 112
VA VK ++GP G + ++ IG+ VT DG T+ ++ + A + L +Q +
Sbjct: 36 VANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQ----QD 91
Query: 113 KAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPE 172
+ GDGTT ++ +L + V ++ + +G ++A+ I
Sbjct: 92 REIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAI-------------- 137
Query: 173 EITQVATISANGEREIGELLARAMEKVGKEGVITV 207
R I E+L+ +++ +GKE +I +
Sbjct: 138 -------------RFINEVLSTSVDTLGKETLINI 159
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 53 VAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATN 112
++ +V+ ++GP+G + ++ S+G+ +T DGVT+ + ++ A A ++ +V+ +
Sbjct: 33 ISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPA----AKMMVEVSKTQD 88
Query: 113 KAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMA 153
GDGTT A ++ +L + + V+ + G +MA
Sbjct: 89 SFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMA 129
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 105/244 (43%), Gaps = 57/244 (23%)
Query: 315 RRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEE 374
+++++D LA TG I+S T+D++ LGTA
Sbjct: 315 KKSDMDKLAKATGASIVS-----TIDEISSSDLGTA------------------------ 345
Query: 375 RCEEVCQTAMGKSAATFDREKAQERLSKLTG-----GVAVFKVGGASEVEVGERKDRVTD 429
E V Q +G+ TF +TG V++ V G +E V E + +TD
Sbjct: 346 --ERVEQVKVGEDYMTF-----------VTGCKNPKAVSIL-VRGETEHVVDEMERSITD 391
Query: 430 ALNATRAAVEEGIVPGGGVALLYATKALENLKTENED----QRRGIHIIQNALKAPTLTI 485
+L+ +A+E+G GG A L++ + Q+ I +A++ +
Sbjct: 392 SLHVVASALEDGAYAAGGGATAAEIAF--RLRSYAQKIGGRQQLAIEKFADAIEEIPRAL 449
Query: 486 ASNAGFDGSTIIGKLLEQD---DVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASV 542
A NAG D I+ KL + + +G + GE DMVK G+I+P++V + A+ A
Sbjct: 450 AENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEA 509
Query: 543 SLLF 546
+++
Sbjct: 510 AIMI 513
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 529
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 35 DINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRD 94
D + G R+ + + +A VK ++GP G + ++ IG+ +T DG T+ + +E
Sbjct: 4 DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 63
Query: 95 KAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMA 153
A A ++ ++A +K GDGTT ++ +L + V ++ + SG ++A
Sbjct: 64 PA----AKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLA 118
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 414 GASEVEVGERKDRVTDALNATRAAVE-EGIVPGGGVALLYATKALENLKTE--NEDQRRG 470
GA++ E + + DAL + +E + +VPGGG + LEN T + +Q
Sbjct: 373 GANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAI 432
Query: 471 IHIIQNALKAPTLTIASNAGFDGSTIIGKLL----------EQDDVNF-GFDAAKGEYVD 519
++ L P T+A NA D + ++ KL E+ ++ + G D G+ D
Sbjct: 433 AEFARSLLVIPN-TLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRD 491
Query: 520 MVKAGIIDP--LKVVRTALADAASVSLL 545
+AG+ +P +KV A A++++L
Sbjct: 492 NKQAGVFEPTIVKVKSLKFATEAAITIL 519
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 105/521 (20%), Positives = 215/521 (41%), Gaps = 64/521 (12%)
Query: 53 VAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATN 112
+A+ ++ +GPK ++ +G +T DG + R I+ + A A + +++ +
Sbjct: 21 IADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPA----AKSMIEISRTQD 76
Query: 113 KAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPE 172
+ GDGTT +L +L+ + ++ + S + A+D +IS LK + + T
Sbjct: 77 EEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSN 136
Query: 173 EITQVATISANGEREIGELLARAMEKVGKEGVITV---------VDGNTMVNELEVVGGM 223
T + I+++ ++ + + + V TV +D ++ GG+
Sbjct: 137 RDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGI 196
Query: 224 ----KLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKNRALLI 279
+ RG + VT P+ ++ ++NP I++ D S + G + +E R
Sbjct: 197 IEDSCVLRGVMINKDVTHPRMRR-YIKNPRIVLLD---SSLEYKKGESQTDIEITR---- 248
Query: 280 VAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTL 339
E D +L + + + ++C +D+ L +I+E +G++
Sbjct: 249 -----EEDFTRILQMEEEYIQ-QLC---------------EDIIQLKPDVVITE-KGIS- 285
Query: 340 DKVKEEMLG---TAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREK- 395
D + ++ TA + D+ + G + I R EE+ + +G A + +K
Sbjct: 286 DLAQHYLMRANITAIRRVRKTDNNRIARACGAR--IVSRPEELREEDVGTGAGLLEIKKI 343
Query: 396 AQERLSKLT----GGVAVFKVGGASEVEVGERKDRVTDALNATR-AAVEEGIVPGGGVAL 450
E + +T + GAS+ + E + + DA+ R ++ +VPGGG +
Sbjct: 344 GDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASE 403
Query: 451 LYATKAL-ENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDG----STIIGKLLEQDD 505
+ AL E K ++ + AL+ T+ N G +++ K +++
Sbjct: 404 MAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENC 463
Query: 506 VNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLF 546
+G + G VDM + GI +PL V A ++L
Sbjct: 464 ETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLL 504
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Query: 50 VSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAG 109
+ E+ + +MGP GRN II +G +T D T+ R ++ A VK +
Sbjct: 35 IRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPA-------VKVLVM 87
Query: 110 ATNKA---AGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDL 161
AT + GDGT +L +L K ++ G++ +++ G MA + +L
Sbjct: 88 ATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKEL 142
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Query: 42 ARAAMLQGVSE---VAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKD 98
A+AA+ +S + + ++ +GPKG ++ G+ K+TKDG + ++ +
Sbjct: 8 AQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPT-- 65
Query: 99 VGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMA 153
A+L+ +VA A + GDGTT ++ +L + ++ G++ + G + A
Sbjct: 66 --ASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAA 118
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Query: 413 GGASEVEVGERKDRVTDALNATR-AAVEEGIVPGGGVA-LLYATKALENLKTENEDQRRG 470
GG+ ++ + E + DA+ R + + PGGG + + K E K Q+
Sbjct: 439 GGSKDI-LNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLEGIQQWP 497
Query: 471 IHIIQNALKAPTLTIASNAGFDGSTIIGKL---LEQDDVNFGFDAAKGEYVDMVKAGIID 527
+ +A++ T+ NAG D ++ +L Q + G D KG+ VDMV GI +
Sbjct: 498 YQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDMVSYGIWE 557
Query: 528 P----LKVVRTALADAA 540
P + V+TA+ A
Sbjct: 558 PEVIKQQSVKTAIESAC 574
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 39 GVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKD 98
G A+ + + VA+ ++ +GPK ++ +G +T DG + R I+ A
Sbjct: 17 GRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPA-- 74
Query: 99 VGANLVKQVAGATNKAAGDGTTCATVLTQAILTE 132
A + +++ ++ GDGTT +L IL +
Sbjct: 75 --AKSMLELSRTQDEEVGDGTTTVIILAGEILAQ 106
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 47 LQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQ 106
+Q E+A+ + GP G N ++ + VT D T+ R +E + A A ++
Sbjct: 17 IQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPA----AKMIVM 72
Query: 107 VAGATNKAAGDGTTCATVL 125
+ + GDGT V
Sbjct: 73 ASHMQEQEVGDGTNFVLVF 91
>pdb|1J6R|A Chain A, Crystal Structure Of Activation (Adomet Binding) Domain Of
Methionine Synthase (Tm0269) From Thermotoga Maritima At
2.2 A Resolution
pdb|1J6R|B Chain B, Crystal Structure Of Activation (Adomet Binding) Domain Of
Methionine Synthase (Tm0269) From Thermotoga Maritima At
2.2 A Resolution
Length = 214
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 75/179 (41%), Gaps = 24/179 (13%)
Query: 327 GGEIISEDRGLTLDKVKEEMLGTAKKV----------TVSVDDTIVLHGGGDKKLIEERC 376
G E I E+ T+++ EE+L AK V ++S DD + K L +
Sbjct: 38 GAEEIPEEFRKTVNRAYEELLDAAKPVVLWRDFEVDGSLSFDDMRLTGELATKHLSGSKI 97
Query: 377 EEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASE-VEVGERKDRVTDALNATR 435
V +GK EK +E K +A F G ASE VE RK V L R
Sbjct: 98 ITVFLATLGKKVD----EKIEEYFRKGEDLLAFFIDGIASEMVEYALRK--VDAELRMKR 151
Query: 436 AAVEEG--IVPGGGVALLYATKALENLKTENEDQRRGIHIIQNA-LKAPTLTIASNAGF 491
+ +E I PG G L K + + E D +++I+++ + P TI + G+
Sbjct: 152 SNLEGSFRISPGYGDLPLSLNKKIAEIFKEEVD----VNVIEDSYVLVPRKTITAFVGW 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,472,328
Number of Sequences: 62578
Number of extensions: 624187
Number of successful extensions: 1634
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1438
Number of HSP's gapped (non-prelim): 83
length of query: 575
length of database: 14,973,337
effective HSP length: 104
effective length of query: 471
effective length of database: 8,465,225
effective search space: 3987120975
effective search space used: 3987120975
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)