Query 008181
Match_columns 575
No_of_seqs 128 out of 1444
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 20:31:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12849 groEL chaperonin GroE 100.0 3E-111 7E-116 926.8 61.7 540 32-574 1-540 (542)
2 PRK12852 groEL chaperonin GroE 100.0 7E-111 1E-115 927.5 61.9 543 32-575 2-545 (545)
3 PRK00013 groEL chaperonin GroE 100.0 6E-111 1E-115 924.5 61.0 539 32-572 1-541 (542)
4 PRK12850 groEL chaperonin GroE 100.0 3E-110 7E-115 920.3 61.1 542 32-575 2-544 (544)
5 PRK12851 groEL chaperonin GroE 100.0 6E-109 1E-113 909.4 60.7 538 32-571 2-540 (541)
6 PTZ00114 Heat shock protein 60 100.0 1E-108 3E-113 910.3 60.8 530 29-559 10-543 (555)
7 PRK14104 chaperonin GroEL; Pro 100.0 1E-108 3E-113 906.5 60.5 531 33-564 3-533 (546)
8 cd03344 GroEL GroEL_like type 100.0 1E-107 2E-112 896.9 59.7 519 34-554 1-519 (520)
9 TIGR02348 GroEL chaperonin Gro 100.0 4E-107 1E-111 893.2 59.5 521 34-557 2-523 (524)
10 PLN03167 Chaperonin-60 beta su 100.0 5E-107 1E-111 899.2 58.9 532 28-561 51-586 (600)
11 CHL00093 groEL chaperonin GroE 100.0 5E-106 1E-110 885.7 58.3 523 32-557 1-526 (529)
12 TIGR02347 chap_CCT_zeta T-comp 100.0 1.3E-91 2.8E-96 771.8 50.9 463 34-560 9-530 (531)
13 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.2E-91 2.5E-96 766.0 45.5 453 34-556 5-483 (484)
14 cd03335 TCP1_alpha TCP-1 (CTT 100.0 3.9E-91 8.5E-96 770.4 49.4 463 36-557 3-527 (527)
15 cd03339 TCP1_epsilon TCP-1 (CT 100.0 5.6E-91 1.2E-95 768.9 49.8 470 21-554 2-526 (526)
16 TIGR02339 thermosome_arch ther 100.0 9.6E-91 2.1E-95 766.4 50.6 458 33-554 8-518 (519)
17 TIGR02344 chap_CCT_gamma T-com 100.0 2.7E-90 5.8E-95 763.9 49.7 460 34-557 9-523 (525)
18 cd03343 cpn60 cpn60 chaperonin 100.0 3.2E-90 6.8E-95 762.8 50.0 458 34-555 8-516 (517)
19 TIGR02343 chap_CCT_epsi T-comp 100.0 3.7E-90 8E-95 761.7 50.2 471 21-555 6-531 (532)
20 TIGR02340 chap_CCT_alpha T-com 100.0 4.7E-90 1E-94 762.7 49.8 467 34-559 5-533 (536)
21 KOG0361 Chaperonin complex com 100.0 1.9E-91 4.2E-96 695.4 33.8 470 33-563 12-530 (543)
22 cd03340 TCP1_eta TCP-1 (CTT or 100.0 1.1E-89 2.3E-94 758.6 51.0 462 34-556 9-520 (522)
23 TIGR02342 chap_CCT_delta T-com 100.0 1.1E-89 2.4E-94 756.7 49.7 460 34-555 2-516 (517)
24 cd03338 TCP1_delta TCP-1 (CTT 100.0 1E-89 2.2E-94 758.0 49.5 459 35-555 2-515 (515)
25 KOG0356 Mitochondrial chaperon 100.0 3.8E-90 8.2E-95 718.1 42.4 527 33-563 16-544 (550)
26 PTZ00212 T-complex protein 1 s 100.0 2.2E-89 4.7E-94 756.3 50.8 462 33-559 14-529 (533)
27 cd03336 TCP1_beta TCP-1 (CTT o 100.0 2.8E-89 6E-94 753.5 50.8 460 34-558 6-516 (517)
28 TIGR02345 chap_CCT_eta T-compl 100.0 2.6E-89 5.7E-94 754.5 48.8 460 34-555 11-519 (522)
29 TIGR02346 chap_CCT_theta T-com 100.0 1.1E-88 2.4E-93 749.8 49.1 464 35-563 11-527 (531)
30 cd03337 TCP1_gamma TCP-1 (CTT 100.0 6.1E-89 1.3E-93 744.4 45.9 440 34-554 9-479 (480)
31 TIGR02341 chap_CCT_beta T-comp 100.0 6.4E-88 1.4E-92 741.9 51.0 460 34-558 7-517 (519)
32 COG0459 GroL Chaperonin GroEL 100.0 9E-89 2E-93 739.9 35.5 471 32-560 2-518 (524)
33 cd03341 TCP1_theta TCP-1 (CTT 100.0 2.6E-86 5.7E-91 722.3 48.5 439 38-555 5-471 (472)
34 cd00309 chaperonin_type_I_II c 100.0 7.8E-86 1.7E-90 719.4 48.6 439 35-554 2-464 (464)
35 KOG0363 Chaperonin complex com 100.0 8.2E-81 1.8E-85 615.8 33.1 463 34-561 11-524 (527)
36 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1.3E-79 2.9E-84 674.9 46.3 441 53-557 1-485 (485)
37 KOG0358 Chaperonin complex com 100.0 1.5E-80 3.2E-85 616.7 28.5 464 34-555 19-533 (534)
38 KOG0362 Chaperonin complex com 100.0 2.3E-73 5E-78 583.7 38.7 460 37-564 21-529 (537)
39 KOG0360 Chaperonin complex com 100.0 6E-74 1.3E-78 584.2 27.4 469 35-563 13-543 (545)
40 KOG0364 Chaperonin complex com 100.0 9.8E-73 2.1E-77 570.2 23.4 472 23-559 2-524 (527)
41 KOG0359 Chaperonin complex com 100.0 6.2E-68 1.3E-72 534.7 21.2 455 36-555 12-514 (520)
42 KOG0357 Chaperonin complex com 100.0 2.5E-65 5.3E-70 502.2 21.5 380 20-557 6-397 (400)
43 cd03333 chaperonin_like chaper 100.0 4.9E-27 1.1E-31 230.1 20.7 192 172-440 2-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 99.9 4.1E-26 8.8E-31 230.2 21.5 197 185-441 20-254 (261)
45 KOG0230 Phosphatidylinositol-4 99.3 2.7E-11 5.9E-16 140.1 14.7 206 185-450 334-577 (1598)
46 COG0459 GroL Chaperonin GroEL 97.2 0.00052 1.1E-08 76.1 6.8 120 267-409 237-356 (524)
47 smart00574 POX domain associat 48.2 83 0.0018 28.7 7.2 60 389-461 68-128 (140)
48 TIGR02345 chap_CCT_eta T-compl 47.6 1.1 2.4E-05 50.1 -5.9 60 274-334 247-315 (522)
49 PRK13600 putative ribosomal pr 38.2 1.4E+02 0.0031 24.8 6.6 55 265-329 20-74 (84)
50 PF07526 POX: Associated with 29.1 1.1E+02 0.0024 28.0 5.1 58 391-461 70-128 (140)
51 PRK06683 hypothetical protein; 24.2 2.8E+02 0.006 22.8 6.2 54 267-330 20-73 (82)
52 PRK13601 putative L7Ae-like ri 21.1 3.3E+02 0.0071 22.4 6.0 54 266-329 16-69 (82)
53 PTZ00072 40S ribosomal protein 20.1 2.4E+02 0.0052 25.9 5.3 57 126-182 27-93 (148)
No 1
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.1e-111 Score=926.84 Aligned_cols=540 Identities=57% Similarity=0.871 Sum_probs=519.8
Q ss_pred cchhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcc
Q 008181 32 VAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGAT 111 (575)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~q 111 (575)
|.|.+.||.+++..|++++..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||.+|+||+|++++|++|
T Consensus 1 ~~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~q 80 (542)
T PRK12849 1 MAKIIKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKT 80 (542)
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhc
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchHHHHH
Q 008181 112 NKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGEL 191 (575)
Q Consensus 112 d~~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~la~l 191 (575)
|+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|+++.++|.++|+|+++++++++++
T Consensus 81 d~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~l 160 (542)
T PRK12849 81 NDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGEL 160 (542)
T ss_pred CCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred HHHHHHHhcccCeEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccccCCHHHHHHHHHHHH
Q 008181 192 LARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAV 271 (575)
Q Consensus 192 v~ea~~~v~~~~~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~l~~~~~l~~~le~i~ 271 (575)
+++|+..+++++.|.++.|++.+|++++++|++|+++|.+|+|.++.+.|++.++||+|+++|++|++++++.++++++.
T Consensus 161 v~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~ 240 (542)
T PRK12849 161 IAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVA 240 (542)
T ss_pred HHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHH
Confidence 99999999988888888999998877999999999999999999888889999999999999999999999999999999
Q ss_pred HhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCccee
Q 008181 272 EKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAK 351 (575)
Q Consensus 272 ~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~ 351 (575)
+.|++|||++++|+++++++|..|++++.++|++||+|+|+++++++|+|||.+|||++++++.+..++++++++||+|+
T Consensus 241 ~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~ 320 (542)
T PRK12849 241 QSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAK 320 (542)
T ss_pred HhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceee
Confidence 99999999999999999999999999999999999999999999999999999999999998777779999999999999
Q ss_pred EEEEeeccEEEEecCCChhhHHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHH
Q 008181 352 KVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDAL 431 (575)
Q Consensus 352 ~v~~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal 431 (575)
.|+++++++++++++++++++..|++++ +.+++.+.++|++++|+||++||+|+++||+|||+|+.+++|++|+++||+
T Consensus 321 ~v~~~~~~~~~i~g~~~~~~i~~r~~~l-~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl 399 (542)
T PRK12849 321 RVTITKDNTTIVDGAGDKEAIEARVAQI-RRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDAL 399 (542)
T ss_pred EEEEeeeeEEEEeCCCCHHHHHHHHHHH-HHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCcccCccHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcCCCceeEe
Q 008181 432 NATRAAVEEGIVPGGGVALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFD 511 (575)
Q Consensus 432 ~~~~~al~~gvvpGGGa~E~~l~~~L~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~Gid 511 (575)
+++++++++|||||||++|++++..|++++..++++|+++++|++||+.||++||+|||+|+.+++.+|++.| .++|+|
T Consensus 400 ~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~-~~~G~d 478 (542)
T PRK12849 400 NATRAAVEEGIVPGGGVALLRAAKALDELAGLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE-DGFGFN 478 (542)
T ss_pred HHHHHHHHcCeecCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC-CCccee
Confidence 9999999999999999999999999999983378999999999999999999999999999999999999877 579999
Q ss_pred cCCCcccccccCcccccHHHHHHHHHHHHHHHHHHhccchhhccCCCCCCCCCCCCCCCCCCC
Q 008181 512 AAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNSDDKNKPPSRVPNMDGLG 574 (575)
Q Consensus 512 ~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~~~~~~~~~~~~~~~ 574 (575)
+.+|++.||++.|||||+.+|.++|+.|+++|++||++|++|+.+|++..| |-+||||++.+
T Consensus 479 ~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~-~~~~~~~~~~~ 540 (542)
T PRK12849 479 AATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEEEDP-PGGMGGMGGMG 540 (542)
T ss_pred CCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCccCCC-CCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999998866544 67889998876
No 2
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=6.8e-111 Score=927.47 Aligned_cols=543 Identities=54% Similarity=0.853 Sum_probs=521.1
Q ss_pred cchhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcc
Q 008181 32 VAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGAT 111 (575)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~q 111 (575)
|.|++.||.+++..|++|+..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||++||||+|++++|++|
T Consensus 2 ~~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q 81 (545)
T PRK12852 2 AAKDVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKT 81 (545)
T ss_pred CcchhhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchHHHHH
Q 008181 112 NKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGEL 191 (575)
Q Consensus 112 d~~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~la~l 191 (575)
|+++||||||+|+|+++||+++.+++++|+||..|++||++|.+.++++|+++++|+++.+++.++|++++++++.++++
T Consensus 82 ~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~l 161 (545)
T PRK12852 82 NDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKM 161 (545)
T ss_pred CceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888999999999989999999
Q ss_pred HHHHHHHhcccCeEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccccCCHHHHHHHHHHHH
Q 008181 192 LARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAV 271 (575)
Q Consensus 192 v~ea~~~v~~~~~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~l~~~~~l~~~le~i~ 271 (575)
+++|+.++++++.|.+..|++..+.+++++|+.|+++|.+|||+++++.|++.++||+|+++|++++++++++++++.+.
T Consensus 162 i~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~ 241 (545)
T PRK12852 162 IAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVV 241 (545)
T ss_pred HHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHHHH
Confidence 99999999988888888888875566999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCccee
Q 008181 272 EKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAK 351 (575)
Q Consensus 272 ~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~ 351 (575)
+.|+||||++++|+++++++|..|++++.++|++||+|+|+++++++|+|||.+|||++++++.+.++++++.++||+|+
T Consensus 242 ~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~ 321 (545)
T PRK12852 242 QSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAK 321 (545)
T ss_pred HhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999998777779999999999999
Q ss_pred EEEEeeccEEEEecCCChhhHHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHH
Q 008181 352 KVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDAL 431 (575)
Q Consensus 352 ~v~~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal 431 (575)
.|++.+++++++++++++..+..|+++| +.+++.+.+.|++++|++|++||+|+++||+|||+|+.+++|++|+++||+
T Consensus 322 ~v~~~~~~~~~i~~~~~~~~i~~ri~~l-~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl 400 (545)
T PRK12852 322 KVVIDKENTTIVNGAGKKADIEARVGQI-KAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDAL 400 (545)
T ss_pred EEEEEccEEEEEeCCCCHHHHHHHHHHH-HHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCcccCccHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcCCCceeEe
Q 008181 432 NATRAAVEEGIVPGGGVALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFD 511 (575)
Q Consensus 432 ~~~~~al~~gvvpGGGa~E~~l~~~L~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~Gid 511 (575)
+++++++++|||||||++|++++.+|.+++..++++|+++++|++||+.||++||+|||+|+.+++++|++.|++++|||
T Consensus 401 ~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d 480 (545)
T PRK12852 401 NATRAAVQEGIVPGGGVALLRAKKAVGRINNDNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFD 480 (545)
T ss_pred HHHHHHHhcCCCcCchHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEe
Confidence 99999999999999999999999999998766778999999999999999999999999999999999998888889999
Q ss_pred cCCCcccccccCcccccHHHHHHHHHHHHHHHHHHhccchhhccCCCCCCCCCC-CCCCCCCCCC
Q 008181 512 AAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNSDDKNKPPS-RVPNMDGLGY 575 (575)
Q Consensus 512 ~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~~~~~~-~~~~~~~~~~ 575 (575)
+.+|++.||++.|||||+.+|.++|+.|+++|++||++|++|..+|++...++| ++++||+.+|
T Consensus 481 ~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~~~ 545 (545)
T PRK12852 481 AQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKKDAAPAMPAGGGMGGMGF 545 (545)
T ss_pred CcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcCCCCCCCCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999998877666656 6667777765
No 3
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=6.2e-111 Score=924.48 Aligned_cols=539 Identities=56% Similarity=0.853 Sum_probs=514.9
Q ss_pred cchhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcc
Q 008181 32 VAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGAT 111 (575)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~q 111 (575)
|.+++.||++++..|++|+..++++|+|||||+||+|||+++.|+++|||||+||+|+|+++||++++||+|++++|++|
T Consensus 1 ~~~~~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~q 80 (542)
T PRK00013 1 MAKDIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKT 80 (542)
T ss_pred CCchhhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchHHHHH
Q 008181 112 NKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGEL 191 (575)
Q Consensus 112 d~~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~la~l 191 (575)
|+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++.++|.++|+|++++++.++++
T Consensus 81 d~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls~l 160 (542)
T PRK00013 81 NDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGKL 160 (542)
T ss_pred CcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999889999999
Q ss_pred HHHHHHHhcccCeEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccccCCHHHHHHHHHHHH
Q 008181 192 LARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAV 271 (575)
Q Consensus 192 v~ea~~~v~~~~~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~l~~~~~l~~~le~i~ 271 (575)
+++|+..+++++.|.++.+....+.+++++|++|+++|.+|||..+++.|++.++||+|+++|++|++++++.++++++.
T Consensus 161 v~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~ 240 (542)
T PRK00013 161 IAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQVA 240 (542)
T ss_pred HHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHHHH
Confidence 99999999887777766554444556999999999999999999988889999999999999999999999999999999
Q ss_pred HhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCccee
Q 008181 272 EKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAK 351 (575)
Q Consensus 272 ~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~ 351 (575)
+.|++|||++++|+++++++|..|++++.++|++||+|+|+++++++|+|||.+||+++++++.+++++++++++||+|+
T Consensus 241 ~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~ 320 (542)
T PRK00013 241 QSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAK 320 (542)
T ss_pred HhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999998877789999999999999
Q ss_pred EEEEeeccEEEEecCCChhhHHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHH
Q 008181 352 KVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDAL 431 (575)
Q Consensus 352 ~v~~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal 431 (575)
.|++.++++++|+++++++.+..|++++ +.+++.+.+.|++++|+||++||+|+++||+|||+|+.+++|++|+++||+
T Consensus 321 ~v~~~~~~~~~i~~~~~~~~i~~ri~~l-~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal 399 (542)
T PRK00013 321 KVVVTKDNTTIVDGAGDKEAIKARVAQI-KAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDAL 399 (542)
T ss_pred EEEEecCEEEEEeCCCCHHHHHHHHHHH-HHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCcccCccHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcCCCceeE
Q 008181 432 NATRAAVEEGIVPGGGVALLYATKALENLKTE-NEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGF 510 (575)
Q Consensus 432 ~~~~~al~~gvvpGGGa~E~~l~~~L~~~~~~-~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~Gi 510 (575)
+++++++++|+|||||++|++++.+|+++ .. ++++|+++++|++||+.||++||+|||+|+.+++++|++.|++++|+
T Consensus 400 ~~vk~al~~g~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~ 478 (542)
T PRK00013 400 HATRAAVEEGIVPGGGVALLRAAPALEAL-KGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGKGKGYGY 478 (542)
T ss_pred HHHHHHHHcCcccCcHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCCCEeE
Confidence 99999999999999999999999999988 44 78999999999999999999999999999999999999888778999
Q ss_pred ecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHhccchhhccCCCC-CCCCCCCCCCCCC
Q 008181 511 DAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNSDD-KNKPPSRVPNMDG 572 (575)
Q Consensus 511 d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~-~~~~~~~~~~~~~ 572 (575)
|+.+|++.||++.|||||+.||.++|+.|+++|++||++|++|..+|+. +.+|||.-+||+|
T Consensus 479 d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~ 541 (542)
T PRK00013 479 NAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPEKKAAAPPMGGGGMGG 541 (542)
T ss_pred eCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999887654 4677787778876
No 4
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3e-110 Score=920.34 Aligned_cols=542 Identities=56% Similarity=0.881 Sum_probs=517.2
Q ss_pred cchhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcc
Q 008181 32 VAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGAT 111 (575)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~q 111 (575)
|.|++.||.+++..|++|+..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||++|+||+|++++|++|
T Consensus 2 ~~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~q 81 (544)
T PRK12850 2 AAKEIRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKT 81 (544)
T ss_pred CcceecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchHHHHH
Q 008181 112 NKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGEL 191 (575)
Q Consensus 112 d~~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~la~l 191 (575)
|+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++.++|.++|++++++++.++++
T Consensus 82 d~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~l 161 (544)
T PRK12850 82 NDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIGEM 161 (544)
T ss_pred cchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred HHHHHHHhcccCeEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccccCCHHHHHHHHHHHH
Q 008181 192 LARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAV 271 (575)
Q Consensus 192 v~ea~~~v~~~~~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~l~~~~~l~~~le~i~ 271 (575)
+++|+..+++++.|.++.+....+++++++|++|+++|.+|+|+++.+.|+..++||+|+++|+++++.+++.++++++.
T Consensus 162 v~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~ 241 (544)
T PRK12850 162 IAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEAVV 241 (544)
T ss_pred HHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHHHH
Confidence 99999999888877766655555667999999999999999999888889999999999999999999999999999999
Q ss_pred HhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCccee
Q 008181 272 EKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAK 351 (575)
Q Consensus 272 ~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~ 351 (575)
+.|++|||++++|+++++++|..|++++..+|++||+|+|+++++++|+|||++|||++++++.+++++++++++||+|+
T Consensus 242 ~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~ 321 (544)
T PRK12850 242 QSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAK 321 (544)
T ss_pred HhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999998777779999999999999
Q ss_pred EEEEeeccEEEEecCCChhhHHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHH
Q 008181 352 KVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDAL 431 (575)
Q Consensus 352 ~v~~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal 431 (575)
.|++.++++++++++++++++..|++++ +.+++.+.++|++++|++|++||+|+++||+|||+|+.+++|++|+++||+
T Consensus 322 ~v~~~~~~~~~i~g~~~~~~i~~ri~~l-~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl 400 (544)
T PRK12850 322 RVLITKENTTIIDGAGDKKNIEARVKQI-RAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDAL 400 (544)
T ss_pred EEEEEeeeEEEEeCCCCHHHHHHHHHHH-HHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCcccCccHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcCCCceeEe
Q 008181 432 NATRAAVEEGIVPGGGVALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFD 511 (575)
Q Consensus 432 ~~~~~al~~gvvpGGGa~E~~l~~~L~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~Gid 511 (575)
+++++++++|||||||++|++++..|+++...++++|+++++|++||+.||++||+|||+|+.+++.+|++.| .++|+|
T Consensus 401 ~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-~~~G~d 479 (544)
T PRK12850 401 HATRAAVEEGIVPGGGVALLRARSALRGLKGANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP-GNFGFN 479 (544)
T ss_pred HHHHHHHhcCCccCCcHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-CCccee
Confidence 9999999999999999999999999999832378999999999999999999999999999999999998876 479999
Q ss_pred cCCCcccccccCcccccHHHHHHHHHHHHHHHHHHhccchhhccCCCCCCCCCC-CCCCCCCCCC
Q 008181 512 AAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNSDDKNKPPS-RVPNMDGLGY 575 (575)
Q Consensus 512 ~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~~~~~~-~~~~~~~~~~ 575 (575)
+.+|++.||++.|||||+.+|.++|+.|+++|++||++|++|..+|+..|+|.- .-|||+|.+|
T Consensus 480 ~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~~~~ 544 (544)
T PRK12850 480 AQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKKAAAAAAGPGPGMGGMGY 544 (544)
T ss_pred CCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCCCCCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999998877665544 5689999888
No 5
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=6.1e-109 Score=909.43 Aligned_cols=538 Identities=56% Similarity=0.856 Sum_probs=511.4
Q ss_pred cchhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcc
Q 008181 32 VAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGAT 111 (575)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~q 111 (575)
|.+.+.||.+++..|++++..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||++|+||+|++++|++|
T Consensus 2 ~~~~~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~q 81 (541)
T PRK12851 2 AAKEVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKT 81 (541)
T ss_pred CcceecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhh
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchHHHHH
Q 008181 112 NKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGEL 191 (575)
Q Consensus 112 d~~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~la~l 191 (575)
|+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++.+++.++|+++++++++|+++
T Consensus 82 d~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~~l 161 (541)
T PRK12851 82 NDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGRL 161 (541)
T ss_pred hHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888999999999889999999
Q ss_pred HHHHHHHhcccCeEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccccCCHHHHHHHHHHHH
Q 008181 192 LARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAV 271 (575)
Q Consensus 192 v~ea~~~v~~~~~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~l~~~~~l~~~le~i~ 271 (575)
+++|+..+++++.|.++.+....+++++++|++|+++|.+|+|+.+.+.|+++++||+|+++|+++++.+++.++++++.
T Consensus 162 v~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~ 241 (541)
T PRK12851 162 VAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEAVV 241 (541)
T ss_pred HHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHHHH
Confidence 99999999888866665544344556999999999999999999988899999999999999999999999999999999
Q ss_pred HhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCccee
Q 008181 272 EKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAK 351 (575)
Q Consensus 272 ~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~ 351 (575)
+.|+||||++++|+++++++|..|++++.++|++||+|+|+++++++|+|||.+|||++++++.+++++++++++||+|+
T Consensus 242 ~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~ 321 (541)
T PRK12851 242 QSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAK 321 (541)
T ss_pred HhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999998777778999999999999
Q ss_pred EEEEeeccEEEEecCCChhhHHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHH
Q 008181 352 KVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDAL 431 (575)
Q Consensus 352 ~v~~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal 431 (575)
.|++.+++|++++++++++++.+|+++| +++++.+.++|++++|++|++||+|+++||+|||+|+.+++|++|+++||+
T Consensus 322 ~v~~~~~~~~~i~~~~~~~~i~~ri~~l-~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl 400 (541)
T PRK12851 322 KVVVEKENTTIIDGAGSKTEIEGRVAQI-RAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDAL 400 (541)
T ss_pred EEEEEcceEEEEcCCCCHHHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCcccCccHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcCCCceeEe
Q 008181 432 NATRAAVEEGIVPGGGVALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFD 511 (575)
Q Consensus 432 ~~~~~al~~gvvpGGGa~E~~l~~~L~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~Gid 511 (575)
+++++++++|||||||++|++++..|++++..++++|+++++|++||+.||++||+|||+|+.+++++|++.| .++|+|
T Consensus 401 ~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~-~~~G~d 479 (541)
T PRK12851 401 HATRAAVEEGIVPGGGVALLRAVKALDKLETANGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP-GGYGFN 479 (541)
T ss_pred HHHHHHHHcCcccCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-CCeeee
Confidence 9999999999999999999999999999876678999999999999999999999999999999999999877 479999
Q ss_pred cCCCcccccccCcccccHHHHHHHHHHHHHHHHHHhccchhhccCCCCCCCCCC-CCCCCC
Q 008181 512 AAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNSDDKNKPPS-RVPNMD 571 (575)
Q Consensus 512 ~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~~~~~~-~~~~~~ 571 (575)
+.+|++.||++.|||||+.+|.++|+.|+++|++||++|++|..+|+..|+||. .-||||
T Consensus 480 ~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~~~~~~~~~~~ 540 (541)
T PRK12851 480 AATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKKEPAPPAPPGGGMD 540 (541)
T ss_pred CCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCCCCCCCCCCCcccC
Confidence 999999999999999999999999999999999999999999998876555433 456776
No 6
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=1.3e-108 Score=910.28 Aligned_cols=530 Identities=59% Similarity=0.927 Sum_probs=511.0
Q ss_pred ccccchhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHH
Q 008181 29 RNYVAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVA 108 (575)
Q Consensus 29 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s 108 (575)
..||.++..+|++++..|+++|..|+++|+|||||+||+|||+++.|+++|||||+||+|+|+++||++|+||+|++++|
T Consensus 10 ~~~~~~~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a 89 (555)
T PTZ00114 10 YRFKGKEIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVA 89 (555)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchHH
Q 008181 109 GATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREI 188 (575)
Q Consensus 109 ~~qd~~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~l 188 (575)
++||+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|+++.++|.++|+|++++++++
T Consensus 90 ~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l 169 (555)
T PTZ00114 90 SKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEI 169 (555)
T ss_pred HhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999989999
Q ss_pred HHHHHHHHHHhcccCeEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccccCCHHHHHHHHH
Q 008181 189 GELLARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLE 268 (575)
Q Consensus 189 a~lv~ea~~~v~~~~~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~l~~~~~l~~~le 268 (575)
++++++|+..++++|.|.+++|++++|++++++|++|+++|.+|+|+++.+.|++.++||+|+++|++|++++++.++++
T Consensus 170 ~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le 249 (555)
T PTZ00114 170 GSLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILE 249 (555)
T ss_pred HHHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHHHHHHHH
Confidence 99999999999988889999999999987899999999999999999988899999999999999999999999999999
Q ss_pred HHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCeEeecC-CCCcccccCcccC
Q 008181 269 LAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISED-RGLTLDKVKEEML 347 (575)
Q Consensus 269 ~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~-~~~~~~~~~~~~l 347 (575)
++.+.|+||+|++++|+++++++|..|++++.++|++||+|++|++++++|+|||.+|||+++++. .+..++++++++|
T Consensus 250 ~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~L 329 (555)
T PTZ00114 250 HAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSML 329 (555)
T ss_pred HHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999999996 6667788999999
Q ss_pred cceeEEEEeeccEEEEecCCChhhHHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHH
Q 008181 348 GTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRV 427 (575)
Q Consensus 348 G~~~~v~~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l 427 (575)
|+|+.|++.+++++++++++++.+|++|+.++ +.++..+.+.|++++|++|++||+++++||+|||+|+.+++|++|++
T Consensus 330 G~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l-~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i 408 (555)
T PTZ00114 330 GSAKKVTVTKDETVILTGGGDKAEIKERVELL-RSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRI 408 (555)
T ss_pred CCCceEEEEeceEEEEeCCCcHHHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCcccCccHHHHHHHHHHHhhhc--c-CchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcC
Q 008181 428 TDALNATRAAVEEGIVPGGGVALLYATKALENLKT--E-NEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQD 504 (575)
Q Consensus 428 ~dal~~~~~al~~gvvpGGGa~E~~l~~~L~~~~~--~-~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~ 504 (575)
+||++++++++++|||||||++|++++..|++++. . ++++|+++++|++||+.||++||+|||+|+.+++++|++..
T Consensus 409 ~Dal~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~~ 488 (555)
T PTZ00114 409 EDALNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILEKK 488 (555)
T ss_pred HHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 99999999999999999999999999999998875 3 68999999999999999999999999999999999998744
Q ss_pred CCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHhccchhhccCCCC
Q 008181 505 DVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNSDD 559 (575)
Q Consensus 505 ~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~ 559 (575)
++++|||+.+|++.||++.|||||+.||.++|+.|+++|++||++|++|...|.+
T Consensus 489 ~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~ 543 (555)
T PTZ00114 489 DPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDLPKE 543 (555)
T ss_pred CCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhCCcc
Confidence 6789999999999999999999999999999999999999999999999987665
No 7
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=1.4e-108 Score=906.49 Aligned_cols=531 Identities=55% Similarity=0.873 Sum_probs=511.7
Q ss_pred chhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhccc
Q 008181 33 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATN 112 (575)
Q Consensus 33 ~~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd 112 (575)
+|++.||.+++..|++|+..++++|+|||||+||+|||+++.|+++|||||+||+++|++++|++|||++|++++|++||
T Consensus 3 ~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd 82 (546)
T PRK14104 3 AKEVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSA 82 (546)
T ss_pred cceecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchHHHHHH
Q 008181 113 KAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELL 192 (575)
Q Consensus 113 ~~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~la~lv 192 (575)
+++||||||+|+|+++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++.++|.++|++++++++.+++++
T Consensus 83 ~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv 162 (546)
T PRK14104 83 DAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFL 162 (546)
T ss_pred ccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999877889999999999999999999
Q ss_pred HHHHHHhcccCeEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccccCCHHHHHHHHHHHHH
Q 008181 193 ARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVE 272 (575)
Q Consensus 193 ~ea~~~v~~~~~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~l~~~~~l~~~le~i~~ 272 (575)
++|+..++++|.|.+..+++.++++++++|++|+++|.+|||+++++.++.++++|+|+++|.+++++++++++++++.+
T Consensus 163 ~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~ 242 (546)
T PRK14104 163 ADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQ 242 (546)
T ss_pred HHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHH
Confidence 99999999989888888888766679999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCcceeE
Q 008181 273 KNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKK 352 (575)
Q Consensus 273 ~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~ 352 (575)
.|+||||++++|+++++++|..|++++..+|++||+|+|+++++++|+|||.+|||++++++.+..++++++++||+|++
T Consensus 243 ~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~ 322 (546)
T PRK14104 243 TGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKK 322 (546)
T ss_pred hCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeE
Confidence 99999999999999999999999999889999999999999999999999999999999999888899999999999999
Q ss_pred EEEeeccEEEEecCCChhhHHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHH
Q 008181 353 VTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALN 432 (575)
Q Consensus 353 v~~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~ 432 (575)
|+++++++++++++++++++.+|++++ +.+++.+.++|++++|+||++||+|+++||+|||+|+++++|++|+++||++
T Consensus 323 v~~~~~~~~~i~g~~~~~~i~~ri~~l-~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~ 401 (546)
T PRK14104 323 VMIDKENTTIVNGAGKKADIEARVAQI-KAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMH 401 (546)
T ss_pred EEEcCCEEEEEeCCCCHHHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCcccCccHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcCCCceeEec
Q 008181 433 ATRAAVEEGIVPGGGVALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDA 512 (575)
Q Consensus 433 ~~~~al~~gvvpGGGa~E~~l~~~L~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~Gid~ 512 (575)
++++++++|||||||++|++++..|+++...++++++++++|++||+.||++||+|||+|+.+++.+|+..|.+++|+|+
T Consensus 402 a~~~ai~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~ 481 (546)
T PRK14104 402 ATRAAVEEGIVPGGGVALLRASEQLKGIKTKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDS 481 (546)
T ss_pred HHHHHHHcCcCcCchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcCCCcEeEeC
Confidence 99999999999999999999999999885447899999999999999999999999999999999999877777899999
Q ss_pred CCCcccccccCcccccHHHHHHHHHHHHHHHHHHhccchhhccCCCCCCCCC
Q 008181 513 AKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNSDDKNKPP 564 (575)
Q Consensus 513 ~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~~~~~ 564 (575)
.+|++.||++.|||||+.||.++|++|+++|++||++|++|...|+..+.+|
T Consensus 482 ~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id~~I~~~~~~~~~~~ 533 (546)
T PRK14104 482 QTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKGGAGP 533 (546)
T ss_pred CCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCC
Confidence 9999999999999999999999999999999999999999998887766554
No 8
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=9.6e-108 Score=896.92 Aligned_cols=519 Identities=61% Similarity=0.930 Sum_probs=504.2
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcccc
Q 008181 34 KDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNK 113 (575)
Q Consensus 34 ~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd~ 113 (575)
+++.+|.+++..|++++..|+++++|||||+||+|||++++|+++|||||+||+++|+++||++++||+|++++|++||+
T Consensus 1 ~~~~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~ 80 (520)
T cd03344 1 KDIKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTND 80 (520)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchHHHHHHH
Q 008181 114 AAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLA 193 (575)
Q Consensus 114 ~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~la~lv~ 193 (575)
++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++.++|.++|+|+++++++++++++
T Consensus 81 e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~ 160 (520)
T cd03344 81 VAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIA 160 (520)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred HHHHHhcccCeEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccccCCHHHHHHHHHHHHHh
Q 008181 194 RAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEK 273 (575)
Q Consensus 194 ea~~~v~~~~~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~l~~~~~l~~~le~i~~~ 273 (575)
+|+..+++++.|.+++|++.+|++++++|++|+++|.+|+|..++++|+++++||+|+++|+++++++++.++++++.+.
T Consensus 161 ~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~ 240 (520)
T cd03344 161 EAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKA 240 (520)
T ss_pred HHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 99999988888888999999997799999999999999999988888999999999999999999999999999999999
Q ss_pred CCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCcceeEE
Q 008181 274 NRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKV 353 (575)
Q Consensus 274 ~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~v 353 (575)
|+||||++++|+++++++|..|++++.++|++||+|+++++++++|+|||.+|||++++++++.+++++++++||+|+.|
T Consensus 241 ~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v 320 (520)
T cd03344 241 GRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKV 320 (520)
T ss_pred CCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEE
Confidence 99999999999999999999999999999999999999999999999999999999999877777999999999999999
Q ss_pred EEeeccEEEEecCCChhhHHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHH
Q 008181 354 TVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNA 433 (575)
Q Consensus 354 ~~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~ 433 (575)
++++++++|++++++++++++|+++| +.+++.+.++|++++|+||++||+|+++||+|||+|+.+++|++|+++||+++
T Consensus 321 ~~~~~~~~~i~~~~~~~~i~~ri~~l-~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~ 399 (520)
T cd03344 321 VVTKDDTTIIGGAGDKAAIKARIAQI-RKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNA 399 (520)
T ss_pred EEeeceEEEEeCCCCHHHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCcccCccHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcCCCceeEecC
Q 008181 434 TRAAVEEGIVPGGGVALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDAA 513 (575)
Q Consensus 434 ~~~al~~gvvpGGGa~E~~l~~~L~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~Gid~~ 513 (575)
+++++++|+|||||++||+++.+|++++..++++|+++++|++||+.||++||+|||+|+.+++++|++.|+ ++|+|+.
T Consensus 400 ~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~-~~G~d~~ 478 (520)
T cd03344 400 TRAAVEEGIVPGGGVALLRASPALDKLKALNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD-GFGYDAA 478 (520)
T ss_pred HHHHHhcCCCcCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC-CEeEECC
Confidence 999999999999999999999999998766789999999999999999999999999999999999998887 8999999
Q ss_pred CCcccccccCcccccHHHHHHHHHHHHHHHHHHhccchhhc
Q 008181 514 KGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVL 554 (575)
Q Consensus 514 ~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~ 554 (575)
+|++.||++.|||||+.+|.++|+.|+++|++||++|.+|.
T Consensus 479 ~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~ 519 (520)
T cd03344 479 TGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV 519 (520)
T ss_pred CCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence 99999999999999999999999999999999999999885
No 9
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=4.5e-107 Score=893.20 Aligned_cols=521 Identities=57% Similarity=0.852 Sum_probs=502.1
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcccc
Q 008181 34 KDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNK 113 (575)
Q Consensus 34 ~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd~ 113 (575)
+.+.||.+++..|++|+..++++|+|||||+||+|||+++.|+++|||||+||+|+|+++||++|+|++|++++|++||+
T Consensus 2 ~~~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~ 81 (524)
T TIGR02348 2 KQIKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTND 81 (524)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchHHHHHHH
Q 008181 114 AAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLA 193 (575)
Q Consensus 114 ~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~la~lv~ 193 (575)
++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++.++|.++|+++++++++++++++
T Consensus 82 e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~ 161 (524)
T TIGR02348 82 VAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIA 161 (524)
T ss_pred eeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred HHHHHhcccCeEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccccCCHHHHHHHHHHHHHh
Q 008181 194 RAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEK 273 (575)
Q Consensus 194 ea~~~v~~~~~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~l~~~~~l~~~le~i~~~ 273 (575)
+|+..+++++.|.++.|+..+|++++++|++|+++|.+|+|.++++.|++.++||+|+++|+++++++++.++++++.+.
T Consensus 162 ~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~ 241 (524)
T TIGR02348 162 EAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQS 241 (524)
T ss_pred HHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHHHh
Confidence 99999998888888888888777799999999999999999998889999999999999999999999999999999999
Q ss_pred CCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCcceeEE
Q 008181 274 NRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKV 353 (575)
Q Consensus 274 ~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~v 353 (575)
|+||||++++|+++++++|..|++++.++|++||+|+|++.++++|+|||++|||++++.+.+++++++++++||+|+.|
T Consensus 242 g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v 321 (524)
T TIGR02348 242 GKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKV 321 (524)
T ss_pred CcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999877777999999999999999
Q ss_pred EEeeccEEEEecCCChhhHHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHH
Q 008181 354 TVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNA 433 (575)
Q Consensus 354 ~~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~ 433 (575)
++.++++++++++++++++..|++.+ +.+++.+.+.|++++|+||++||+|+++||+|||+|+.+++|++|+++||+++
T Consensus 322 ~~~~~~~~~i~~~~~~~~~~~ri~~l-~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~ 400 (524)
T TIGR02348 322 TVDKDNTTIVEGAGDKAAIKARVAQI-KAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNA 400 (524)
T ss_pred EEeecEEEEEcCCCCHHHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCcccCccHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcCCCceeEec
Q 008181 434 TRAAVEEGIVPGGGVALLYATKALENLKTE-NEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDA 512 (575)
Q Consensus 434 ~~~al~~gvvpGGGa~E~~l~~~L~~~~~~-~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~Gid~ 512 (575)
+|+++++|||||||++||+++..|++ +.. ++++++++++|++||+.||++||+|||+|+.+++++|++. ..++|||+
T Consensus 401 ~r~a~~~g~VpGGGa~e~~~s~~L~~-~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~ 478 (524)
T TIGR02348 401 TRAAVEEGIVPGGGVALLRAAAALEG-LKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES-KGNFGFNA 478 (524)
T ss_pred HHHHHhcCCccCCcHHHHHHHHHHHH-hccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc-CCCeeEeC
Confidence 99999999999999999999999998 544 7899999999999999999999999999999999999876 34599999
Q ss_pred CCCcccccccCcccccHHHHHHHHHHHHHHHHHHhccchhhccCC
Q 008181 513 AKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNS 557 (575)
Q Consensus 513 ~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~ 557 (575)
.+|++.||++.|||||+.||.++|+.|+++|++||++|++|...|
T Consensus 479 ~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~~~ 523 (524)
T TIGR02348 479 ATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVADKP 523 (524)
T ss_pred cCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhcCC
Confidence 999999999999999999999999999999999999999997643
No 10
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=4.8e-107 Score=899.15 Aligned_cols=532 Identities=44% Similarity=0.731 Sum_probs=508.9
Q ss_pred cccccchhhcccH--HHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHH
Q 008181 28 NRNYVAKDINFGV--GARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVK 105 (575)
Q Consensus 28 ~~~~~~~~~~~g~--~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~ 105 (575)
.+-.+.|++.||. ++|+.+++++..|+++|+|||||+||+|||++++|+++|||||+||+|+|+++||++|+||+|++
T Consensus 51 ~~~~~~k~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~ 130 (600)
T PLN03167 51 PKVKAAKELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVR 130 (600)
T ss_pred chhhhcceeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHH
Confidence 3445679999999 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCc
Q 008181 106 QVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGE 185 (575)
Q Consensus 106 ~~s~~qd~~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~ 185 (575)
++|++||+++||||||+++|+++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++ ++|.++|+++++++
T Consensus 131 ~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d-~~L~~vA~tS~~~~ 209 (600)
T PLN03167 131 QAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVED-SELADVAAVSAGNN 209 (600)
T ss_pred HHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999975 67999999999999
Q ss_pred hHHHHHHHHHHHHhcccCeEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccccCCHHHHHH
Q 008181 186 REIGELLARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVG 265 (575)
Q Consensus 186 ~~la~lv~ea~~~v~~~~~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~l~~~~~l~~ 265 (575)
+.|++|+++|+.+++++|.|.+++|++.+|++++++|++|+++|.+|||++++++|+++++||+|+++|++|++++++.+
T Consensus 210 ~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~ 289 (600)
T PLN03167 210 YEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIG 289 (600)
T ss_pred HHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHH
Confidence 99999999999999988889899999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCeEeecCCCCcccccCcc
Q 008181 266 LLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEE 345 (575)
Q Consensus 266 ~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~ 345 (575)
+++.+.+.|+||||++++|+++++++|+.|++++..+|++||+|+|++.++++|+|||.+|||++++++.++++++++.+
T Consensus 290 ~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~ 369 (600)
T PLN03167 290 ILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKE 369 (600)
T ss_pred HHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998878789999999
Q ss_pred cCcceeEEEEeeccEEEEecCCChhhHHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHH
Q 008181 346 MLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKD 425 (575)
Q Consensus 346 ~lG~~~~v~~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r 425 (575)
+||+|+.|++.+++++++++.++++.+++|+.+| +..++.+.++|+++++++|+++|+|++++|+|||+|+.+++|++|
T Consensus 370 ~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i-~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er 448 (600)
T PLN03167 370 VLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQI-KNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKL 448 (600)
T ss_pred HCceeeEEEEecccceeeCCCccHHHHHHHHHHH-HhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHH
Confidence 9999999999999999999988999999999999 999988999999999999999999999888899999999999999
Q ss_pred HHHHHHHHHHHHHHhCcccCccHHHHHHHHHHHhhhcc-CchhH-HHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhc
Q 008181 426 RVTDALNATRAAVEEGIVPGGGVALLYATKALENLKTE-NEDQR-RGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQ 503 (575)
Q Consensus 426 ~l~dal~~~~~al~~gvvpGGGa~E~~l~~~L~~~~~~-~~~~~-~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~ 503 (575)
+++||++++|+++++|+|||||++||+++.+|++++.. ++++| .++++|++||+.||++||+|||+|+.+++.+|++.
T Consensus 449 ~i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~ 528 (600)
T PLN03167 449 RVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSN 528 (600)
T ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999998765 55555 66999999999999999999999999999999866
Q ss_pred CCCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHhccchhhccCCCCCC
Q 008181 504 DDVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNSDDKN 561 (575)
Q Consensus 504 ~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~~ 561 (575)
+++++|||+.+|++.||++.|||||+.||+++|+.|+++|++||++|++|..+|.+++
T Consensus 529 ~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~~~~~ 586 (600)
T PLN03167 529 DNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEPEP 586 (600)
T ss_pred CCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 7788999999999999999999999999999999999999999999999998765544
No 11
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=5.1e-106 Score=885.75 Aligned_cols=523 Identities=47% Similarity=0.765 Sum_probs=500.0
Q ss_pred cchhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcc
Q 008181 32 VAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGAT 111 (575)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~q 111 (575)
|.|++.||.++|+++++||..++++|+|||||+||+|||+++.|+++|||||+||+|+|+++||++++|++|+++++.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~ 80 (529)
T CHL00093 1 MSKKILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKT 80 (529)
T ss_pred CCceeecCHHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchHHHHH
Q 008181 112 NKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGEL 191 (575)
Q Consensus 112 d~~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~la~l 191 (575)
++++||||||+|+|+++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++.++|.+||++++++++.|+++
T Consensus 81 ~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~l 160 (529)
T CHL00093 81 NDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVGSM 160 (529)
T ss_pred CceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred HHHHHHHhcccCeEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccccCCH-HHHHHHHHHH
Q 008181 192 LARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDM-NSLVGLLELA 270 (575)
Q Consensus 192 v~ea~~~v~~~~~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~l~~~-~~l~~~le~i 270 (575)
+++|+.+++++|.|.+..|+..++.+++++|++|+++|.+|||++.++.|+++++||+|+++|++|+.. .++.++++.+
T Consensus 161 v~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i 240 (529)
T CHL00093 161 IADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQV 240 (529)
T ss_pred HHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHHHH
Confidence 999999999888887777766666679999999999999999999888999999999999999999987 7899999999
Q ss_pred HHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCcce
Q 008181 271 VEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTA 350 (575)
Q Consensus 271 ~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~ 350 (575)
.+.+.+|+|++++|++++++.|+.|+.++..+|++||+|+++++++++|+|||.+|||++++++.+.+++++++++||+|
T Consensus 241 ~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~ 320 (529)
T CHL00093 241 TKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQA 320 (529)
T ss_pred HhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcc
Confidence 99999999999999999999999899888889999999999999999999999999999999888888999999999999
Q ss_pred eEEEEeeccEEEEecCCChhhHHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHH
Q 008181 351 KKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDA 430 (575)
Q Consensus 351 ~~v~~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~da 430 (575)
+.|++.++++++++ .++++++..||.++ +++++.+.++|++++|+||++||+|+++||+|||+|+.+++|++|+++||
T Consensus 321 ~~v~~~~~~~~~~~-~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DA 398 (529)
T CHL00093 321 RRIIVTKDSTTIIA-DGNEEQVKARCEQL-RKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDA 398 (529)
T ss_pred eEEEEecCEEEEEe-cCcHHHHHHHHHHH-HHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHH
Confidence 99999999999998 56788999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCcccCccHHHHHHHHHHHhhhc-c-CchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcCCCce
Q 008181 431 LNATRAAVEEGIVPGGGVALLYATKALENLKT-E-NEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNF 508 (575)
Q Consensus 431 l~~~~~al~~gvvpGGGa~E~~l~~~L~~~~~-~-~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~ 508 (575)
++++++++++|+|||||++||+++..|++++. . ++++|+++++|++||+.||++||+|||+|+.+++++++.. +.++
T Consensus 399 l~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-~~~~ 477 (529)
T CHL00093 399 INATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ-DFEI 477 (529)
T ss_pred HHHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc-CCCE
Confidence 99999999999999999999999999999876 4 7899999999999999999999999999999999999765 4589
Q ss_pred eEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHhccchhhccCC
Q 008181 509 GFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNS 557 (575)
Q Consensus 509 Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~ 557 (575)
|||+.+|++.||++.|||||+.||.++|+.|+++|++||++|++|..+|
T Consensus 478 G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~~ 526 (529)
T CHL00093 478 GYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDKK 526 (529)
T ss_pred eEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999865
No 12
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-91 Score=771.78 Aligned_cols=463 Identities=21% Similarity=0.332 Sum_probs=421.6
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcccc
Q 008181 34 KDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNK 113 (575)
Q Consensus 34 ~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd~ 113 (575)
.+...|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++||+
T Consensus 9 ~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~----a~ll~~~a~~qd~ 84 (531)
T TIGR02347 9 AESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPT----ASMIARAATAQDD 84 (531)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHHhhh
Confidence 467788999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccC---CCHHHHHHHHHHhcCC------
Q 008181 114 AAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMI---STPEEITQVATISANG------ 184 (575)
Q Consensus 114 ~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v---~~~~~L~~va~ts~~~------ 184 (575)
++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.+++.|+++++++ .+.+.|.++|+|++++
T Consensus 85 ~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~ 164 (531)
T TIGR02347 85 ITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPIDL 164 (531)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchhh
Confidence 9999999999999999999999999999999999999999999999999999764 4788899999999865
Q ss_pred chHHHHHHHHHHHHhcccCe--------EEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccc
Q 008181 185 EREIGELLARAMEKVGKEGV--------ITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKK 256 (575)
Q Consensus 185 ~~~la~lv~ea~~~v~~~~~--------I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~ 256 (575)
+++|++++++|+..+++++. |.+..|++..|+ ++++|++|+++|.+|+ |+++++||+|+++|++
T Consensus 165 ~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds-~~v~Giv~~~~~~~~~-------~~~~~~n~~Ill~~~~ 236 (531)
T TIGR02347 165 ADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDT-TLIRGLVLDHGARHPD-------MPRRVKNAYILTCNVS 236 (531)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCcccc-EEEeeEEEecCcCCCC-------CceeccCceEEEEeCC
Confidence 68999999999999987542 234678888887 9999999999999987 4678899999999998
Q ss_pred cCC-------------HHH-----------HHHHHHHHHHhCC-------C---EEEEecCchHHHHHHHHHhhcccCce
Q 008181 257 ISD-------------MNS-----------LVGLLELAVEKNR-------A---LLIVAEDVERDALAMLILNKHHAGVK 302 (575)
Q Consensus 257 l~~-------------~~~-----------l~~~le~i~~~~~-------~---lvI~~~~i~~~al~~l~~n~~~~~~~ 302 (575)
|+. +++ +..+++++.+.+. + ||+++++|++.++++|.++ +
T Consensus 237 le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~------~ 310 (531)
T TIGR02347 237 LEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKE------G 310 (531)
T ss_pred CCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHC------C
Confidence 752 222 3456677777551 4 8999999999999999876 4
Q ss_pred EEEEecCCCCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCcceeEE---EEeeccEEEEecCCChhhHHHHHHHH
Q 008181 303 VCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKV---TVSVDDTIVLHGGGDKKLIEERCEEV 379 (575)
Q Consensus 303 i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~v---~~~~~~~~~~~g~~~~~~i~~~~~~l 379 (575)
|+++++ +++++|+|||++|||+++++ ++++++++||+|+.| ++++++|++|++++++
T Consensus 311 I~~i~r-----v~~~~le~ia~~tGa~~i~~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~---------- 370 (531)
T TIGR02347 311 IMALRR-----AKRRNMERLTLACGGEALNS-----VEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNP---------- 370 (531)
T ss_pred ceEEcc-----CCHHHHHHHHHHhCCEEecc-----cccCCccccccceEEEEEEECCeEEEEEEcCCCC----------
Confidence 888884 46789999999999999999 899999999999999 5667889999987543
Q ss_pred HhhhhccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHH
Q 008181 380 CQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALE 458 (575)
Q Consensus 380 ~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~ 458 (575)
+++||+|||+|+.+++|++|+++||++++++++++| +|||||++||+++.+|+
T Consensus 371 --------------------------~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~ 424 (531)
T TIGR02347 371 --------------------------KSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLK 424 (531)
T ss_pred --------------------------CeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHH
Confidence 358999999999999999999999999999999999 99999999999999999
Q ss_pred hhhcc-CchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcCC---CceeEecCCCcccccccCcccccHHHHHH
Q 008181 459 NLKTE-NEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDD---VNFGFDAAKGEYVDMVKAGIIDPLKVVRT 534 (575)
Q Consensus 459 ~~~~~-~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~~---~~~Gid~~~g~i~d~~~~gI~dp~~vk~~ 534 (575)
+++.. ++++|+++++|++||+.||++||+|||+|+.+++.+|++.|+ .++|+|+.+|++.||++.|||||+.+|++
T Consensus 425 ~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~ 504 (531)
T TIGR02347 425 EEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVVGVDLETGEPIDPEIKGIWDNYRVKKQ 504 (531)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeeeccCCCccchhhccCEEcHHHHHH
Confidence 98776 789999999999999999999999999999999999988774 47999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccchhhccCCCCC
Q 008181 535 ALADAASVSLLFTTTEATVLVNSDDK 560 (575)
Q Consensus 535 ~l~~A~e~a~~iL~iD~iI~~~~~~~ 560 (575)
+|++|+|+|++|||||++|+.+|+.+
T Consensus 505 al~~A~e~a~~iLrID~ii~~~~~~~ 530 (531)
T TIGR02347 505 LIQSATVIASQLLLVDEVMRAGRSML 530 (531)
T ss_pred HHHHHHHHHHHHHhHHHHHhCccccC
Confidence 99999999999999999999877653
No 13
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.2e-91 Score=766.01 Aligned_cols=453 Identities=22% Similarity=0.326 Sum_probs=417.4
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcccc
Q 008181 34 KDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNK 113 (575)
Q Consensus 34 ~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd~ 113 (575)
.....|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++||+
T Consensus 5 ~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~----a~l~~~~a~~qd~ 80 (484)
T cd03342 5 AEVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPT----ASMIARAATAQDD 80 (484)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHH----HHHHHHHHHHhhh
Confidence 356788999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCC---CHHHHHHHHHHhcCCc-----
Q 008181 114 AAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMIS---TPEEITQVATISANGE----- 185 (575)
Q Consensus 114 ~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~---~~~~L~~va~ts~~~~----- 185 (575)
++||||||+++|+++||+++.+++++|+||..|++||++|.+.+++.|++++++++ +.+.+.+||+++++++
T Consensus 81 ~~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~ 160 (484)
T cd03342 81 ITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADL 160 (484)
T ss_pred HhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhH
Confidence 99999999999999999999999999999999999999999999999999999987 7889999999999875
Q ss_pred -hHHHHHHHHHHHHhcccC--------eEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccc
Q 008181 186 -REIGELLARAMEKVGKEG--------VITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKK 256 (575)
Q Consensus 186 -~~la~lv~ea~~~v~~~~--------~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~ 256 (575)
+.|++++++|+..+++++ .|.+.+|++..|+ ++++|++|+++|.+|+| +++++||+|+++|++
T Consensus 161 ~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds-~~i~G~~~~~~~~~~~m-------~~~~~n~~Ill~~~~ 232 (484)
T cd03342 161 ADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDT-KLIRGLVLDHGARHPDM-------PKRVENAYILTCNVS 232 (484)
T ss_pred HHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCChhhc-eEEeeEEEecCCCCCCC-------CccccCceEEEEeCC
Confidence 899999999999998765 2567789999887 99999999999999874 778899999999999
Q ss_pred cCCHHH-HHHHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCeEeecCC
Q 008181 257 ISDMNS-LVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDR 335 (575)
Q Consensus 257 l~~~~~-l~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~ 335 (575)
|+..+. +... ...+|||++++|++.++++|.+|+ |++|++ +++++|+|||++|||+++++
T Consensus 233 le~~~~~~~~~------~~~~lvi~~~~I~~~al~~l~~~~------I~av~~-----~~~~~l~~ia~~tGa~ii~~-- 293 (484)
T cd03342 233 LEYEKTEVNSG------FFYSVVINQKGIDPPSLDMLAKEG------ILALRR-----AKRRNMERLTLACGGVAMNS-- 293 (484)
T ss_pred CCCCccccCcE------EEEEEEEeCCCccHHHHHHHHHCC------CeEEEe-----CCHHHHHHHHHHhCCEEecc--
Confidence 976543 2111 124699999999999999998874 899985 47789999999999999999
Q ss_pred CCcccccCcccCcceeEEE---EeeccEEEEecCCChhhHHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeEEEEE
Q 008181 336 GLTLDKVKEEMLGTAKKVT---VSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKV 412 (575)
Q Consensus 336 ~~~~~~~~~~~lG~~~~v~---~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~i 412 (575)
++++++++||+|+.|+ +++++|+++++++++ +++||+|
T Consensus 294 ---l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~------------------------------------~~~tI~l 334 (484)
T cd03342 294 ---VDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNP------------------------------------KSCTILI 334 (484)
T ss_pred ---cccCChhhCcccceEEEEEECCeEEEEEECCCCC------------------------------------cEEEEEE
Confidence 9999999999999994 567889999987543 4689999
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHhHHHHHHHHhcC
Q 008181 413 GGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE-NEDQRRGIHIIQNALKAPTLTIASNAG 490 (575)
Q Consensus 413 rG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~-~~~~~~~i~~~a~AL~~ip~~L~~NaG 490 (575)
||+|+.+++|++|+++||++++++++++| +||||||+||+++.+|++++.. ++++|+++++|++||+.||++||+|||
T Consensus 335 rg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG 414 (484)
T cd03342 335 KGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSG 414 (484)
T ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999 9999999999999999999776 789999999999999999999999999
Q ss_pred CCHHHHHHHHHhcC---CCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHhccchhhccC
Q 008181 491 FDGSTIIGKLLEQD---DVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVN 556 (575)
Q Consensus 491 ~d~~~~l~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~ 556 (575)
+|+.+++.+|+..| +.++|+|+.+|++.||++.|||||+.+|+++|++|+|+|++|||||++|+.+
T Consensus 415 ~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 415 LDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred CCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 99999999998776 4579999999999999999999999999999999999999999999999763
No 14
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.9e-91 Score=770.36 Aligned_cols=463 Identities=21% Similarity=0.322 Sum_probs=419.1
Q ss_pred hcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcccccc
Q 008181 36 INFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNKAA 115 (575)
Q Consensus 36 ~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd~~~ 115 (575)
...|.+++..|++||..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++
T Consensus 3 ~~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~----akll~~~a~~q~~~~ 78 (527)
T cd03335 3 RTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKILVELAQLQDKEV 78 (527)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChH----HHHHHHHHHHHHHHh
Confidence 4578899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHh-hcccCC--CHHHHHHHHHHhcCC------ch
Q 008181 116 GDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKS-RAQMIS--TPEEITQVATISANG------ER 186 (575)
Q Consensus 116 GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~-~s~~v~--~~~~L~~va~ts~~~------~~ 186 (575)
||||||+|+|+++||+++.+++++|+||..|++||+.|.+.+++.|++ +++|++ +.+.|.++|+|++++ .+
T Consensus 79 GDGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~ 158 (527)
T cd03335 79 GDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSD 158 (527)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHH
Confidence 999999999999999999999999999999999999999999999996 899987 788899999999873 47
Q ss_pred HHHHHHHHHHHHhcc---cC---------eEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecc
Q 008181 187 EIGELLARAMEKVGK---EG---------VITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYD 254 (575)
Q Consensus 187 ~la~lv~ea~~~v~~---~~---------~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d 254 (575)
+|++++++|+..++. +| .|.+..|++++|+ ++++|++|+++|.+|. |++.++||+|+++|
T Consensus 159 ~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s-~li~Givi~~~~~~~~-------m~~~i~n~kIlll~ 230 (527)
T cd03335 159 FFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKES-YLVNGYALNCTRASQG-------MPTRVKNAKIACLD 230 (527)
T ss_pred HHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhc-ceeeeEEEecccCCCC-------CcccccCCcEEEEe
Confidence 999999999999852 23 1457789999987 9999999999998873 78899999999999
Q ss_pred cccCC-------------HHH-----------HHHHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCC
Q 008181 255 KKISD-------------MNS-----------LVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPG 310 (575)
Q Consensus 255 ~~l~~-------------~~~-----------l~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~ 310 (575)
++|+. +++ +.++++.+.+.|++|||++++|++.++++|.++ +|++++
T Consensus 231 ~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~------~I~~v~--- 301 (527)
T cd03335 231 FNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEA------GAMAVR--- 301 (527)
T ss_pred ccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHC------CcEEEE---
Confidence 98752 122 346778888999999999999999999999876 488887
Q ss_pred CCCcchhHHHHHHHHhCCeEeecCCCCc-ccccCcccCcceeEEE---EeeccEEEEecCCChhhHHHHHHHHHhhhhcc
Q 008181 311 FGDNRRANLDDLAILTGGEIISEDRGLT-LDKVKEEMLGTAKKVT---VSVDDTIVLHGGGDKKLIEERCEEVCQTAMGK 386 (575)
Q Consensus 311 ~~~~~~~~le~la~~tGa~iis~~~~~~-~~~~~~~~lG~~~~v~---~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~ 386 (575)
++++++|+|||++|||+++++..+++ .+++++++||+|+.|+ +++++|++|+++++
T Consensus 302 --~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~------------------ 361 (527)
T cd03335 302 --RVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKK------------------ 361 (527)
T ss_pred --eCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCC------------------
Confidence 45788999999999999999943331 2345566899999999 66788999998654
Q ss_pred CcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc-C
Q 008181 387 SAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE-N 464 (575)
Q Consensus 387 ~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~-~ 464 (575)
++++||+|||+|+.+++|++|+++||++++++++++| +|||||++||+++.+|++++.. +
T Consensus 362 ------------------~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~ 423 (527)
T cd03335 362 ------------------RSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLG 423 (527)
T ss_pred ------------------CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccC
Confidence 2579999999999999999999999999999999999 9999999999999999998776 7
Q ss_pred chhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcC-----------CCceeEecCCCcccccccCcccccHHHHH
Q 008181 465 EDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQD-----------DVNFGFDAAKGEYVDMVKAGIIDPLKVVR 533 (575)
Q Consensus 465 ~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~-----------~~~~Gid~~~g~i~d~~~~gI~dp~~vk~ 533 (575)
+++++++++|++||+.||++||+|||+|+.+++.+|++.| ++++|+|+.+|++.||++.|||||+.+|.
T Consensus 424 ~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~ 503 (527)
T cd03335 424 SREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSKI 503 (527)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCCCcccchhhccceecHHHHH
Confidence 8999999999999999999999999999999999998765 34689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccchhhccCC
Q 008181 534 TALADAASVSLLFTTTEATVLVNS 557 (575)
Q Consensus 534 ~~l~~A~e~a~~iL~iD~iI~~~~ 557 (575)
++|++|+|+|++|||||++|...|
T Consensus 504 ~~i~~A~e~a~~iLrID~ii~~~~ 527 (527)
T cd03335 504 KSLKFATEAAITILRIDDLIKLNP 527 (527)
T ss_pred HHHHHHHHHHHHHHhhcceeecCC
Confidence 999999999999999999998754
No 15
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.6e-91 Score=768.95 Aligned_cols=470 Identities=21% Similarity=0.342 Sum_probs=424.7
Q ss_pred ccCcccccccccc-hhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchh
Q 008181 21 VYGRVLCNRNYVA-KDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDV 99 (575)
Q Consensus 21 ~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ 99 (575)
++|.|+.+..... .+..+|.+++..|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~--- 78 (526)
T cd03339 2 EYGRPFIIVREQEKKKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQI--- 78 (526)
T ss_pred CCCCCeEEecCCCccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHH---
Confidence 6788865544311 468999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhccccccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCC----CHHHHH
Q 008181 100 GANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMIS----TPEEIT 175 (575)
Q Consensus 100 ga~ll~~~s~~qd~~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~----~~~~L~ 175 (575)
|+|++++|++||+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|++ +.+.|.
T Consensus 79 -akll~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~ 157 (526)
T cd03339 79 -AKLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLI 157 (526)
T ss_pred -HHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999885 577899
Q ss_pred HHHHHhcCC------chHHHHHHHHHHHHhccc--C-------eEEEecCCcccceEEEEeceEEeecccCCCCccCcCC
Q 008181 176 QVATISANG------EREIGELLARAMEKVGKE--G-------VITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKT 240 (575)
Q Consensus 176 ~va~ts~~~------~~~la~lv~ea~~~v~~~--~-------~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~ 240 (575)
++|+|++++ .+.|++++++|+..+... . .|.+.+|++++|| ++++|++|+++|.+|+|
T Consensus 158 ~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS-~~v~Givi~~~~~~~~m------ 230 (526)
T cd03339 158 QTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDT-KLVKGIVIDKDFSHPQM------ 230 (526)
T ss_pred HHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHc-ceeeeEEEecccCCCCC------
Confidence 999999875 368999999999887431 1 2567899999998 99999999999999874
Q ss_pred CceeccCceeeecccccC-------------CHHH-----------HHHHHHHHHHhCCCEEEEecCchHHHHHHHHHhh
Q 008181 241 QKCELENPLILIYDKKIS-------------DMNS-----------LVGLLELAVEKNRALLIVAEDVERDALAMLILNK 296 (575)
Q Consensus 241 ~~~~l~~~kIll~d~~l~-------------~~~~-----------l~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~ 296 (575)
++.++||||++++++++ ++++ +.++++++.+.|++|||++++|++.++++|.+++
T Consensus 231 -~~~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~ 309 (526)
T cd03339 231 -PKEVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNG 309 (526)
T ss_pred -CceecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCC
Confidence 56778899988887543 4444 6678899999999999999999999999998775
Q ss_pred cccCceEEEEecCCCCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCcceeEEEEe-----eccEEEEecCCChhh
Q 008181 297 HHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVS-----VDDTIVLHGGGDKKL 371 (575)
Q Consensus 297 ~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~v~~~-----~~~~~~~~g~~~~~~ 371 (575)
|.+|++. ++++|+|||++|||+++++ +++++++.+|+|+.|+.. .++++|+++|+++
T Consensus 310 ------I~av~~v-----~~~~LerIa~~tGa~ii~~-----l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~-- 371 (526)
T cd03339 310 ------LPAVRWV-----GGVEIELIAIATGGRIVPR-----FEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNS-- 371 (526)
T ss_pred ------CEEEEeC-----CHHHHHHHHHHhCCEEecc-----hhhCChhhcccCceEEEEEecCCCcEEEEEECCCCC--
Confidence 7788863 5678999999999999999 999999999999999842 3577888887643
Q ss_pred HHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHH
Q 008181 372 IEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVAL 450 (575)
Q Consensus 372 i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E 450 (575)
+.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|
T Consensus 372 ----------------------------------~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e 417 (526)
T cd03339 372 ----------------------------------KAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAE 417 (526)
T ss_pred ----------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHH
Confidence 458999999999999999999999999999999998 999999999
Q ss_pred HHHHHHHHhhhcc-CchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcC----CCceeEecCCCcccccccCcc
Q 008181 451 LYATKALENLKTE-NEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQD----DVNFGFDAAKGEYVDMVKAGI 525 (575)
Q Consensus 451 ~~l~~~L~~~~~~-~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~----~~~~Gid~~~g~i~d~~~~gI 525 (575)
|+++..|++++.. ++++++++++|++||++||++|++|||+|+.+++++|+..| +.++|+|+.+|++.||++.||
T Consensus 418 ~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV 497 (526)
T cd03339 418 ISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKV 497 (526)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCc
Confidence 9999999998766 78899999999999999999999999999999999998666 346999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHhccchhhc
Q 008181 526 IDPLKVVRTALADAASVSLLFTTTEATVL 554 (575)
Q Consensus 526 ~dp~~vk~~~l~~A~e~a~~iL~iD~iI~ 554 (575)
|||+.+|+++|+.|+|+|++|||||++|.
T Consensus 498 ~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (526)
T cd03339 498 FETLISKKQQILLATQVVKMILKIDDVIV 526 (526)
T ss_pred eecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence 99999999999999999999999999873
No 16
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=9.6e-91 Score=766.42 Aligned_cols=458 Identities=24% Similarity=0.400 Sum_probs=421.7
Q ss_pred chhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhccc
Q 008181 33 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATN 112 (575)
Q Consensus 33 ~~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd 112 (575)
..+..+|.+++..|++||..++++++|||||+||+|||+++.|+++|||||+||+|+|+++||+ ++|++++|++||
T Consensus 8 ~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~qd 83 (519)
T TIGR02339 8 GTQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPA----AKMLVEVAKTQD 83 (519)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHH----HHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred cccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCC--HHHHHHHHHHhcCCc-----
Q 008181 113 KAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMIST--PEEITQVATISANGE----- 185 (575)
Q Consensus 113 ~~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~--~~~L~~va~ts~~~~----- 185 (575)
+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|++. .+.|.++|+|+++++
T Consensus 84 ~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~ 163 (519)
T TIGR02339 84 AEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEV 163 (519)
T ss_pred HHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccch
Confidence 9999999999999999999999999999999999999999999999999999999863 678999999999865
Q ss_pred --hHHHHHHHHHHHHhcc---cCe---------EEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceee
Q 008181 186 --REIGELLARAMEKVGK---EGV---------ITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLIL 251 (575)
Q Consensus 186 --~~la~lv~ea~~~v~~---~~~---------I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIl 251 (575)
++|++++++|+.++++ +|. |.+++|++.+|+ ++++|++|+++|.+|. |+++++||+|+
T Consensus 164 ~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~vi~~~~~~~~-------m~~~i~n~kIl 235 (519)
T TIGR02339 164 TKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDT-ELVEGIVVDKEPVHPG-------MPKRVKNAKIA 235 (519)
T ss_pred hHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcc-eeEeeEEEecCCCCCC-------CccccCCCcEE
Confidence 7899999999999975 452 456899999987 9999999999999874 68889999999
Q ss_pred ecccc-------------cCCHHHHHHHHH-----------HHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEe
Q 008181 252 IYDKK-------------ISDMNSLVGLLE-----------LAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIK 307 (575)
Q Consensus 252 l~d~~-------------l~~~~~l~~~le-----------~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk 307 (575)
++|++ +++++++.++++ .+.+.|++|||++++|++.++++|.++ +|++|+
T Consensus 236 ll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~------gI~~v~ 309 (519)
T TIGR02339 236 LLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKA------GILAVR 309 (519)
T ss_pred EEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHC------CCEEEe
Confidence 99998 456666655544 899999999999999999999999755 477777
Q ss_pred cCCCCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCcceeEEEEee---ccEEEEecCCChhhHHHHHHHHHhhhh
Q 008181 308 APGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSV---DDTIVLHGGGDKKLIEERCEEVCQTAM 384 (575)
Q Consensus 308 ~~~~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~v~~~~---~~~~~~~g~~~~~~i~~~~~~l~~~~l 384 (575)
++++++|+|||++|||+++++ +++++++.||+|+.|++.+ ++|++|++|+++
T Consensus 310 -----~v~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~--------------- 364 (519)
T TIGR02339 310 -----RVKKSDIEKLARATGAKIVSS-----IKEITESDLGYAGLVEERKVGDDKMTFVEGCKNP--------------- 364 (519)
T ss_pred -----cCCHHHHHHHHHHhCCEEeCc-----hhhCChhhccCCceEEEEEECCeEEEEEEcCCCC---------------
Confidence 457899999999999999999 8889899999999999765 789999987543
Q ss_pred ccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc
Q 008181 385 GKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE 463 (575)
Q Consensus 385 ~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~ 463 (575)
..+||+|||+|+.+++|.+|+++||++++++++++| ||||||++||+++.+|++++..
T Consensus 365 ---------------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~ 423 (519)
T TIGR02339 365 ---------------------KAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARK 423 (519)
T ss_pred ---------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhc
Confidence 348999999999999999999999999999999999 9999999999999999998766
Q ss_pred -CchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcC---CCceeEecCCCcccccccCcccccHHHHHHHHHHH
Q 008181 464 -NEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQD---DVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADA 539 (575)
Q Consensus 464 -~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A 539 (575)
++++++++++|++||+.||++|++|||+|+.+++.+|+..| +.++|+|+.+|++.||++.|||||+.+|+++|+.|
T Consensus 424 ~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A 503 (519)
T TIGR02339 424 IGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSA 503 (519)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCCCccchhhccceEcHHHHHHHHHHH
Confidence 78999999999999999999999999999999999998765 35799999999999999999999999999999999
Q ss_pred HHHHHHHhccchhhc
Q 008181 540 ASVSLLFTTTEATVL 554 (575)
Q Consensus 540 ~e~a~~iL~iD~iI~ 554 (575)
+|+|++||+||++|+
T Consensus 504 ~e~a~~iL~id~ii~ 518 (519)
T TIGR02339 504 TEAATMILRIDDVIA 518 (519)
T ss_pred HHHHHHHHhHhHHhh
Confidence 999999999999985
No 17
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.7e-90 Score=763.88 Aligned_cols=460 Identities=20% Similarity=0.295 Sum_probs=421.2
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcccc
Q 008181 34 KDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNK 113 (575)
Q Consensus 34 ~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd~ 113 (575)
.+...|++++..|+.||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++||+
T Consensus 9 ~~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----akll~~~a~~q~~ 84 (525)
T TIGR02344 9 TKRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPA----AKSMIELSRTQDE 84 (525)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHH----HHHHHHHHHhhhh
Confidence 467889999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCC--CHHHHHHHHHHhcCC------c
Q 008181 114 AAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMIS--TPEEITQVATISANG------E 185 (575)
Q Consensus 114 ~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~--~~~~L~~va~ts~~~------~ 185 (575)
++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ +.+.|.++|+|++++ +
T Consensus 85 ~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~ 164 (525)
T TIGR02344 85 EVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWS 164 (525)
T ss_pred hccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchhHH
Confidence 99999999999999999999999999999999999999999999999999999886 577899999988765 5
Q ss_pred hHHHHHHHHHHHHhcccC-------------eEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeee
Q 008181 186 REIGELLARAMEKVGKEG-------------VITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILI 252 (575)
Q Consensus 186 ~~la~lv~ea~~~v~~~~-------------~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll 252 (575)
+.|++++++|+..+++++ .|++.+|++++|+ ++++|++|++++.++ .|+++++||+|++
T Consensus 165 ~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS-~lv~Gvvi~k~~~~~-------~m~~~~~n~kIll 236 (525)
T TIGR02344 165 DLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDS-CVLKGVMINKDVTHP-------KMRRYIENPRIVL 236 (525)
T ss_pred HHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhc-CcccceEEecccCCC-------CCccccCCCCEEE
Confidence 799999999999997643 2456689999997 999999999998765 4788999999999
Q ss_pred cccccCC-------------HHHHHHH-----------HHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEec
Q 008181 253 YDKKISD-------------MNSLVGL-----------LELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKA 308 (575)
Q Consensus 253 ~d~~l~~-------------~~~l~~~-----------le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~ 308 (575)
+|++|+. ++++.++ ++++.+.|++||+++++|++.++++|.++ +|++++
T Consensus 237 l~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~------~I~av~- 309 (525)
T TIGR02344 237 LDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKA------NISAIR- 309 (525)
T ss_pred EecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC------CceEEe-
Confidence 9998753 3555444 55888899999999999999999999765 588877
Q ss_pred CCCCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCcc-eeEEEE---eeccEEEEecCCChhhHHHHHHHHHhhhh
Q 008181 309 PGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGT-AKKVTV---SVDDTIVLHGGGDKKLIEERCEEVCQTAM 384 (575)
Q Consensus 309 ~~~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~-~~~v~~---~~~~~~~~~g~~~~~~i~~~~~~l~~~~l 384 (575)
++++++|+|||++|||+++++ +++++++++|+ |+.|++ +++++++|++|+++
T Consensus 310 ----~v~~~~LerIa~~tGa~ii~~-----l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~--------------- 365 (525)
T TIGR02344 310 ----RVRKTDNNRIARACGATIVNR-----PEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDP--------------- 365 (525)
T ss_pred ----cCCHHHHHHHHHHhCCeEecc-----hhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCC---------------
Confidence 568899999999999999999 89999999999 998886 45788999987543
Q ss_pred ccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc
Q 008181 385 GKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE 463 (575)
Q Consensus 385 ~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~ 463 (575)
..+||+|||+|+.+++|++|+++||+++++++++++ +|||||++||+|+.+|++++..
T Consensus 366 ---------------------~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~ 424 (525)
T TIGR02344 366 ---------------------KACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASK 424 (525)
T ss_pred ---------------------CEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhc
Confidence 358999999999999999999999999999999996 9999999999999999998776
Q ss_pred -CchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcC----CCceeEecCCCcccccccCcccccHHHHHHHHHH
Q 008181 464 -NEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQD----DVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALAD 538 (575)
Q Consensus 464 -~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~----~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~ 538 (575)
++++|+++++|++||+.||++||+|||+|+.+++++|+..| +.++|+|+.+|++.||++.|||||+.+|+++|+.
T Consensus 425 ~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~ 504 (525)
T TIGR02344 425 LEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKT 504 (525)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCccccchhccceecHHHHHHHHHH
Confidence 78999999999999999999999999999999999998866 3569999999999999999999999999999999
Q ss_pred HHHHHHHHhccchhhccCC
Q 008181 539 AASVSLLFTTTEATVLVNS 557 (575)
Q Consensus 539 A~e~a~~iL~iD~iI~~~~ 557 (575)
|+|+|++||+||++|...|
T Consensus 505 A~e~a~~iL~id~ii~~~~ 523 (525)
T TIGR02344 505 AIESACMLLRIDDIVSGVK 523 (525)
T ss_pred HHHHHHHHHhhhHHhhcCC
Confidence 9999999999999998765
No 18
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=3.2e-90 Score=762.84 Aligned_cols=458 Identities=23% Similarity=0.408 Sum_probs=422.3
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcccc
Q 008181 34 KDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNK 113 (575)
Q Consensus 34 ~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd~ 113 (575)
.+..+|.+++..|++||..++++++|||||+|++|||+++.|+++|||||+||+++|+++||. |+|++++|++||+
T Consensus 8 ~~~~~~~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~q~~ 83 (517)
T cd03343 8 TQRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPA----AKMLVEVAKTQDE 83 (517)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHH----HHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred ccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCC--CHHHHHHHHHHhcCCc------
Q 008181 114 AAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMIS--TPEEITQVATISANGE------ 185 (575)
Q Consensus 114 ~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~--~~~~L~~va~ts~~~~------ 185 (575)
++||||||+|+|+++||+++.+++++|+||..|++||++|.+.+++.|++++++++ +.+.|.+||+++++++
T Consensus 84 ~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~ 163 (517)
T cd03343 84 EVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAK 163 (517)
T ss_pred HhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999986 6888999999999875
Q ss_pred hHHHHHHHHHHHHhcccCe---------E--EEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecc
Q 008181 186 REIGELLARAMEKVGKEGV---------I--TVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYD 254 (575)
Q Consensus 186 ~~la~lv~ea~~~v~~~~~---------I--~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d 254 (575)
++|++++++|+.++++++. | .+++|++++|+ ++++|++|+++|.+|+| ++.++||+|+++|
T Consensus 164 ~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~v~~~~~~~~~m-------~~~~~n~~Illl~ 235 (517)
T cd03343 164 DKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDT-ELIRGIVIDKEVVHPGM-------PKRVENAKIALLD 235 (517)
T ss_pred HHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHc-ceeeeEEEeccCCCCCC-------ccccCCCcEEEEe
Confidence 8999999999999976431 4 45899999987 99999999999999874 6778999999999
Q ss_pred ccc-------------CCHHHHHH-----------HHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCC
Q 008181 255 KKI-------------SDMNSLVG-----------LLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPG 310 (575)
Q Consensus 255 ~~l-------------~~~~~l~~-----------~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~ 310 (575)
++| ++++++.+ +++.+.+.|++|||++++|+++++++|.++ +|++|+
T Consensus 236 ~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~------gI~~v~--- 306 (517)
T cd03343 236 APLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKA------GILAVR--- 306 (517)
T ss_pred ccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC------CcEEEE---
Confidence 985 55555544 556899999999999999999999999765 478887
Q ss_pred CCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCcceeEEEEe---eccEEEEecCCChhhHHHHHHHHHhhhhccC
Q 008181 311 FGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVS---VDDTIVLHGGGDKKLIEERCEEVCQTAMGKS 387 (575)
Q Consensus 311 ~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~v~~~---~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~ 387 (575)
++++++|+|||++|||+++++ ++++++++||+|++|++. +++|+++++|+++
T Consensus 307 --~v~~~~l~~Ia~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~------------------ 361 (517)
T cd03343 307 --RVKKSDMEKLARATGAKIVTN-----IDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNP------------------ 361 (517)
T ss_pred --eCCHHHHHHHHHHhCCEEecc-----hhhCChhhCCccceEEEEEECCeEEEEEEcCCCC------------------
Confidence 457899999999999999998 899999999999999965 6788999887643
Q ss_pred cchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc-Cc
Q 008181 388 AATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE-NE 465 (575)
Q Consensus 388 ~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~-~~ 465 (575)
..+||+|||+|+.+++|++|+++||++++++++++| ||||||++||+++..|++++.. ++
T Consensus 362 ------------------~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~ 423 (517)
T cd03343 362 ------------------KAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGG 423 (517)
T ss_pred ------------------ceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCC
Confidence 247999999999999999999999999999999999 9999999999999999998766 78
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcC---CCceeEecCCCcccccccCcccccHHHHHHHHHHHHHH
Q 008181 466 DQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQD---DVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASV 542 (575)
Q Consensus 466 ~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~ 542 (575)
++++++++|++||+.||++|++|||+|+.+++.+|++.| +.++|+|+.+|++.||++.|||||+.+|+++|++|+|+
T Consensus 424 ~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~ 503 (517)
T cd03343 424 REQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEA 503 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998765 35799999999999999999999999999999999999
Q ss_pred HHHHhccchhhcc
Q 008181 543 SLLFTTTEATVLV 555 (575)
Q Consensus 543 a~~iL~iD~iI~~ 555 (575)
|++||+||++|+.
T Consensus 504 a~~iL~id~ii~~ 516 (517)
T cd03343 504 ATMILRIDDVIAA 516 (517)
T ss_pred HHHHHhhhHhhhC
Confidence 9999999999975
No 19
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.7e-90 Score=761.72 Aligned_cols=471 Identities=21% Similarity=0.338 Sum_probs=423.1
Q ss_pred ccCccccccccc-chhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchh
Q 008181 21 VYGRVLCNRNYV-AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDV 99 (575)
Q Consensus 21 ~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ 99 (575)
.||.|+.+...- ..+...|.+++..|++||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~--- 82 (532)
T TIGR02343 6 EYGRPFIIIKDQDKKKRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPI--- 82 (532)
T ss_pred ccCCCchhhccccccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHH---
Confidence 478785543320 2457889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhccccccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCC----CHHHHH
Q 008181 100 GANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMIS----TPEEIT 175 (575)
Q Consensus 100 ga~ll~~~s~~qd~~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~----~~~~L~ 175 (575)
|+|++++|++||+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.+++.|++++++++ +.+.|.
T Consensus 83 -akll~~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~ 161 (532)
T TIGR02343 83 -AKLMVELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLI 161 (532)
T ss_pred -HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999875 367899
Q ss_pred HHHHHhcCC------chHHHHHHHHHHHHhcc-c-C-------eEEEecCCcccceEEEEeceEEeecccCCCCccCcCC
Q 008181 176 QVATISANG------EREIGELLARAMEKVGK-E-G-------VITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKT 240 (575)
Q Consensus 176 ~va~ts~~~------~~~la~lv~ea~~~v~~-~-~-------~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~ 240 (575)
++|+|++++ .+.|++++++|+..+.. + + .|.+.+|++++|+ ++++|++|+++|.+|+
T Consensus 162 ~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds-~~v~Gi~i~~~~~~~~------- 233 (532)
T TIGR02343 162 QAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDT-KLIKGIIIDKDFSHPQ------- 233 (532)
T ss_pred HHHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccc-eeEeeEEEecCcCCCC-------
Confidence 999999875 36799999999998843 1 1 2567799999998 9999999999999987
Q ss_pred CceeccCceeeeccccc-------------CCHHHH-----------HHHHHHHHHhCCCEEEEecCchHHHHHHHHHhh
Q 008181 241 QKCELENPLILIYDKKI-------------SDMNSL-----------VGLLELAVEKNRALLIVAEDVERDALAMLILNK 296 (575)
Q Consensus 241 ~~~~l~~~kIll~d~~l-------------~~~~~l-----------~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~ 296 (575)
|++.++||||+++++++ ++++++ .++++++.+.|++|||++++|++.++++|.+++
T Consensus 234 m~~~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~ 313 (532)
T TIGR02343 234 MPKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQND 313 (532)
T ss_pred CCeeecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCC
Confidence 46677899999888754 345544 677899999999999999999999999998875
Q ss_pred cccCceEEEEecCCCCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCcceeEEEEe---e--ccEEEEecCCChhh
Q 008181 297 HHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVS---V--DDTIVLHGGGDKKL 371 (575)
Q Consensus 297 ~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~v~~~---~--~~~~~~~g~~~~~~ 371 (575)
|.+||++ ++.+|+|||++|||+++++ ++++++++||+|+.|+.. . ++++++++|+++
T Consensus 314 ------i~~v~~~-----~~~~l~~Ia~~tGa~~i~~-----l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~-- 375 (532)
T TIGR02343 314 ------LPAVRWV-----GGHELELIAIATGGRIVPR-----FEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNS-- 375 (532)
T ss_pred ------cEEEEcC-----CHHHHHHHHHHhCCEEecc-----cccCCHhHCcccceEEEEEecCCcceEEEEECCCCC--
Confidence 7788854 5678999999999999999 999999999999999843 2 478888887643
Q ss_pred HHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHH
Q 008181 372 IEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVAL 450 (575)
Q Consensus 372 i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E 450 (575)
.++||+|||+|+.+++|++|+++||+++++++++++ +|||||++|
T Consensus 376 ----------------------------------~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e 421 (532)
T TIGR02343 376 ----------------------------------KAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAE 421 (532)
T ss_pred ----------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHH
Confidence 358999999999999999999999999999999996 999999999
Q ss_pred HHHHHHHHhhhcc-CchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcC----CCceeEecCCCcccccccCcc
Q 008181 451 LYATKALENLKTE-NEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQD----DVNFGFDAAKGEYVDMVKAGI 525 (575)
Q Consensus 451 ~~l~~~L~~~~~~-~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~----~~~~Gid~~~g~i~d~~~~gI 525 (575)
|+++++|++++.. ++++|+++++|++||+.||++|++|||+|+.+++++|++.| +.++|+|+.+|++.||++.||
T Consensus 422 ~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV 501 (532)
T TIGR02343 422 ISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDGTNDMKEQGV 501 (532)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCccccchhccC
Confidence 9999999998776 78899999999999999999999999999999999998755 356999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHhccchhhcc
Q 008181 526 IDPLKVVRTALADAASVSLLFTTTEATVLV 555 (575)
Q Consensus 526 ~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~ 555 (575)
|||+.+|+++|+.|+|+|++||+||++|..
T Consensus 502 ~Dp~~vk~~al~~A~e~a~~iL~id~ii~~ 531 (532)
T TIGR02343 502 FETLIGKKQQIQLATQLVRMILKIDDVISP 531 (532)
T ss_pred eecHHHHHHHHHHHHHHHHHHHhHhhhccC
Confidence 999999999999999999999999999953
No 20
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.7e-90 Score=762.69 Aligned_cols=467 Identities=20% Similarity=0.326 Sum_probs=421.4
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcccc
Q 008181 34 KDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNK 113 (575)
Q Consensus 34 ~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd~ 113 (575)
.+...|.+++..|++||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+
T Consensus 5 ~~~~~~~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~----akll~~~a~~qd~ 80 (536)
T TIGR02340 5 GERTSGQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKILVELAQLQDR 80 (536)
T ss_pred cceecHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChH----HHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhh-cccCC--CHHHHHHHHHHhcC------C
Q 008181 114 AAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSR-AQMIS--TPEEITQVATISAN------G 184 (575)
Q Consensus 114 ~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~-s~~v~--~~~~L~~va~ts~~------~ 184 (575)
++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.+++.|+++ ++|++ +.++|.++|+|+++ +
T Consensus 81 ~~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~ 160 (536)
T TIGR02340 81 EVGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLD 160 (536)
T ss_pred HhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhh
Confidence 999999999999999999999999999999999999999999999999975 88887 78889999999987 4
Q ss_pred chHHHHHHHHHHHHhc---ccCe---------EEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeee
Q 008181 185 EREIGELLARAMEKVG---KEGV---------ITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILI 252 (575)
Q Consensus 185 ~~~la~lv~ea~~~v~---~~~~---------I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll 252 (575)
+++|++++++|+..++ .+|. +.+++|++++|+ ++++|++|+++|.+| .|+++++||+|++
T Consensus 161 ~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s-~~i~Gi~i~~~~~~~-------~m~~~~~n~kIli 232 (536)
T TIGR02340 161 SDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARES-YLVKGYALNCTRASQ-------QMPKRIKKAKIAC 232 (536)
T ss_pred HHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCcccc-EEEEEEEEecccCCC-------CCcceecCCcEEE
Confidence 6899999999999985 2231 455789999766 999999999999887 4788999999999
Q ss_pred cccccCCH-------------H-----------HHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEec
Q 008181 253 YDKKISDM-------------N-----------SLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKA 308 (575)
Q Consensus 253 ~d~~l~~~-------------~-----------~l~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~ 308 (575)
+|++|+.. + .+.+.++.+.+.|++||+++++|++.++++|.+++ |+++++
T Consensus 233 ~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~------I~~i~r 306 (536)
T TIGR02340 233 LDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAG------AMGVRR 306 (536)
T ss_pred EecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC------cEEEec
Confidence 99987522 2 23456778889999999999999999999998764 888874
Q ss_pred CCCCCcchhHHHHHHHHhCCeEeecCCCC-cccccCcccCcceeEEE---EeeccEEEEecCCChhhHHHHHHHHHhhhh
Q 008181 309 PGFGDNRRANLDDLAILTGGEIISEDRGL-TLDKVKEEMLGTAKKVT---VSVDDTIVLHGGGDKKLIEERCEEVCQTAM 384 (575)
Q Consensus 309 ~~~~~~~~~~le~la~~tGa~iis~~~~~-~~~~~~~~~lG~~~~v~---~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l 384 (575)
+++++|+|||++|||+++++..++ ..+++++++||+|+.|+ +++++|++|++++++
T Consensus 307 -----v~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~--------------- 366 (536)
T TIGR02340 307 -----CKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGR--------------- 366 (536)
T ss_pred -----CCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCC---------------
Confidence 578899999999999999995443 22345667799999999 677899999886543
Q ss_pred ccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc
Q 008181 385 GKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE 463 (575)
Q Consensus 385 ~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~ 463 (575)
.++||+|||+|+.+++|++|+++||++++++++++| +|||||++||+++.+|++++..
T Consensus 367 ---------------------~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~ 425 (536)
T TIGR02340 367 ---------------------KSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATT 425 (536)
T ss_pred ---------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhh
Confidence 368999999999999999999999999999999999 9999999999999999988766
Q ss_pred -CchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcC-----------CCceeEecCCCcccccccCcccccHHH
Q 008181 464 -NEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQD-----------DVNFGFDAAKGEYVDMVKAGIIDPLKV 531 (575)
Q Consensus 464 -~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~-----------~~~~Gid~~~g~i~d~~~~gI~dp~~v 531 (575)
++++++++++|++||+.||++||+|||+|+.+++.+|++.| +.++|+|+.+|++.||++.|||||+.+
T Consensus 426 ~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~Dp~~~ 505 (536)
T TIGR02340 426 LGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVS 505 (536)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccCCccccchhccceecHHH
Confidence 78999999999999999999999999999999999998755 236999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccchhhccCCCC
Q 008181 532 VRTALADAASVSLLFTTTEATVLVNSDD 559 (575)
Q Consensus 532 k~~~l~~A~e~a~~iL~iD~iI~~~~~~ 559 (575)
|+++|+.|+|+|++|||||++|...|++
T Consensus 506 k~~~l~~A~e~a~~iL~ID~ii~~~~~~ 533 (536)
T TIGR02340 506 KVKSLKFATEAAITILRIDDLIKLNPEQ 533 (536)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcCCCC
Confidence 9999999999999999999999887643
No 21
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-91 Score=695.42 Aligned_cols=470 Identities=21% Similarity=0.328 Sum_probs=434.3
Q ss_pred chhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhccc
Q 008181 33 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATN 112 (575)
Q Consensus 33 ~~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd 112 (575)
+++-+.|+...-+|+.+|..+++.++|||||+||||+|++..|+++|+|||+||+|-|++.||+ |+.|+++|++||
T Consensus 12 gtd~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPa----aktlVdia~sQD 87 (543)
T KOG0361|consen 12 GTDPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPA----AKTLVDIARSQD 87 (543)
T ss_pred ccCcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChh----HHHHHHHHhhcc
Confidence 6999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCC--C----HHHHHHHHHHhcCC--
Q 008181 113 KAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMIS--T----PEEITQVATISANG-- 184 (575)
Q Consensus 113 ~~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~--~----~~~L~~va~ts~~~-- 184 (575)
.++||||||||+|++|+|+++..+++.|+||..|+++|++|...+++.|+++++.++ + ++.|.+.|.|++++
T Consensus 88 aEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKl 167 (543)
T KOG0361|consen 88 AEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKL 167 (543)
T ss_pred ccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999999998876 2 45688999998764
Q ss_pred ----chHHHHHHHHHHHHhcccC-----eEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeeccc
Q 008181 185 ----EREIGELLARAMEKVGKEG-----VITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDK 255 (575)
Q Consensus 185 ----~~~la~lv~ea~~~v~~~~-----~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~ 255 (575)
+++|++++++|+..+..+. -|++++||+++|| .+++|+.|++.|.+..| +.+|+++.||||+++|.
T Consensus 168 I~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS-~lv~GVAFkKtFsYAGf----EqqPKk~~NpkIl~Lnv 242 (543)
T KOG0361|consen 168 IRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDS-LLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNV 242 (543)
T ss_pred hhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchh-hhccceeeeehccccch----hhCccccCCceEEEEee
Confidence 6899999999999987431 1789999999999 89999999999998887 46789999999999998
Q ss_pred ccC-------------CHHH-----------HHHHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCC
Q 008181 256 KIS-------------DMNS-----------LVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGF 311 (575)
Q Consensus 256 ~l~-------------~~~~-----------l~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~ 311 (575)
+|+ ++++ +.+.++++..+|.++|+..-.|.|.|.+||..+. |.+ -
T Consensus 243 ELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrd------iFC-----A 311 (543)
T KOG0361|consen 243 ELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRD------IFC-----A 311 (543)
T ss_pred eeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccC------cee-----c
Confidence 653 3443 3456788999999999999999999999998765 332 4
Q ss_pred CCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCcceeEEE---EeeccEEEEecCCChhhHHHHHHHHHhhhhccCc
Q 008181 312 GDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVT---VSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSA 388 (575)
Q Consensus 312 ~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~v~---~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~ 388 (575)
|+++.++|.|+..+||+++.++ ..++.++.||+|..++ ++.++|.+|+||+..
T Consensus 312 GRV~~eDl~Rv~~acGGsi~tt-----~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~a------------------- 367 (543)
T KOG0361|consen 312 GRVPEEDLNRVMQACGGSIQTT-----VSDIKEEVLGTCALFEERQVGGERYNLFEGCPKA------------------- 367 (543)
T ss_pred CcCCHHHHHHHHHhcCcchhhh-----hhhcchhhcchhhhHHHHhhcchhhhhhcCCCcc-------------------
Confidence 6889999999999999999999 8999999999999987 577899999998743
Q ss_pred chhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc-Cch
Q 008181 389 ATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE-NED 466 (575)
Q Consensus 389 ~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~-~~~ 466 (575)
..||+++||+.++.++|.+|++|||++++|.|+++. +|+|||++||++++.|++|+.. .++
T Consensus 368 -----------------ktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK 430 (543)
T KOG0361|consen 368 -----------------KTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGK 430 (543)
T ss_pred -----------------ceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcH
Confidence 459999999999999999999999999999999997 9999999999999999999988 899
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcC---CCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHH
Q 008181 467 QRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQD---DVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVS 543 (575)
Q Consensus 467 ~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a 543 (575)
+|+.+.+|++|||.|||+||+|+|+|..+++++|+..| ..|+|+|++++.+.|+++.+||||..||++++..|+|+|
T Consensus 431 ~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa 510 (543)
T KOG0361|consen 431 QQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAA 510 (543)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccchhhHHHhhccChHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999988 579999999999999999999999999999999999999
Q ss_pred HHHhccchhhccCCCCCCCC
Q 008181 544 LLFTTTEATVLVNSDDKNKP 563 (575)
Q Consensus 544 ~~iL~iD~iI~~~~~~~~~~ 563 (575)
++||.+|+.|.+++.+.+||
T Consensus 511 ~lIlsvDeTikn~~S~~~~p 530 (543)
T KOG0361|consen 511 CLILSVDETIKNPKSQSAPP 530 (543)
T ss_pred hheEehhhhhcCCcccCCCC
Confidence 99999999999988777766
No 22
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.1e-89 Score=758.61 Aligned_cols=462 Identities=22% Similarity=0.337 Sum_probs=423.6
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcccc
Q 008181 34 KDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNK 113 (575)
Q Consensus 34 ~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd~ 113 (575)
.+...|.+++..|+.+|..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+
T Consensus 9 ~~~~~~~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~q~~ 84 (522)
T cd03340 9 TDTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPA----AKTLVDIAKSQDA 84 (522)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHH----HHHHHHHHHHhHh
Confidence 457788999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCC------HHHHHHHHHHhcC----
Q 008181 114 AAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMIST------PEEITQVATISAN---- 183 (575)
Q Consensus 114 ~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~------~~~L~~va~ts~~---- 183 (575)
++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|+++ .+.|.++|+|+++
T Consensus 85 ~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~ 164 (522)
T cd03340 85 EVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLI 164 (522)
T ss_pred HhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcc
Confidence 999999999999999999999999999999999999999999999999999998864 5669999999987
Q ss_pred --CchHHHHHHHHHHHHhcccC-----eEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccc
Q 008181 184 --GEREIGELLARAMEKVGKEG-----VITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKK 256 (575)
Q Consensus 184 --~~~~la~lv~ea~~~v~~~~-----~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~ 256 (575)
++++|++++++|+..+++++ .|.+.+|++.+|+ ++++|++|+++|.+|+|. .|+++++||+|+++|++
T Consensus 165 ~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds-~lv~Giv~~k~~~~~~~~----~~~~~~~n~kIll~~~~ 239 (522)
T cd03340 165 ASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDS-QLVNGVAFKKTFSYAGFE----QQPKKFKNPKILLLNVE 239 (522)
T ss_pred hhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChhhc-eeeeeEEEecccCccccc----cCCccccCCeEEEEeCC
Confidence 35899999999999998754 2556689999997 899999999999999864 36778999999999987
Q ss_pred cC-------------CHHH-----------HHHHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCC
Q 008181 257 IS-------------DMNS-----------LVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFG 312 (575)
Q Consensus 257 l~-------------~~~~-----------l~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~ 312 (575)
++ ++++ +.++++.+.+.|+++|+++++|++.++++|.+++ |+++++
T Consensus 240 Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~------I~~~~~---- 309 (522)
T cd03340 240 LELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRD------IFCAGR---- 309 (522)
T ss_pred CCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCC------cEEEEe----
Confidence 53 3333 4566788889999999999999999999998774 777764
Q ss_pred CcchhHHHHHHHHhCCeEeecCCCCcccccCcccCcceeEEE---EeeccEEEEecCCChhhHHHHHHHHHhhhhccCcc
Q 008181 313 DNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVT---VSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAA 389 (575)
Q Consensus 313 ~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~v~---~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~ 389 (575)
+++++|+|||++|||+++++ ++++++++||+|+.|+ ++++++++|++|..+
T Consensus 310 -v~~~~l~rIa~~tGa~ii~~-----l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-------------------- 363 (522)
T cd03340 310 -VPEEDLKRVAQATGGSIQTT-----VSNITDDVLGTCGLFEERQVGGERYNIFTGCPKA-------------------- 363 (522)
T ss_pred -CCHHHHHHHHHHHCCEEeec-----cccCCccccccceEEEEEEECCEEEEEEECCCCC--------------------
Confidence 47789999999999999999 8999999999999998 456789999987542
Q ss_pred hhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc-Cchh
Q 008181 390 TFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE-NEDQ 467 (575)
Q Consensus 390 ~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~-~~~~ 467 (575)
..+||++||+|+.+++|.+|+++||++++++++++| ||||||++||+++.+|++++.. ++++
T Consensus 364 ----------------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~ 427 (522)
T cd03340 364 ----------------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQ 427 (522)
T ss_pred ----------------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHH
Confidence 358999999999999999999999999999999998 9999999999999999998776 7899
Q ss_pred HHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcC---C-CceeEecCCCcccccccCcccccHHHHHHHHHHHHHHH
Q 008181 468 RRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQD---D-VNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVS 543 (575)
Q Consensus 468 ~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~---~-~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a 543 (575)
++++++|++||+.||++|++|||+|+.+++.+|++.| + .++|+|+.+|++.||++.|||||+.||+++|+.|+|+|
T Consensus 428 ~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a 507 (522)
T cd03340 428 QLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAA 507 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCcccchhhcCceEcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999876 2 56999999999999999999999999999999999999
Q ss_pred HHHhccchhhccC
Q 008181 544 LLFTTTEATVLVN 556 (575)
Q Consensus 544 ~~iL~iD~iI~~~ 556 (575)
++||+||++|+.+
T Consensus 508 ~~iL~id~ii~~~ 520 (522)
T cd03340 508 CLILSVDETIKNP 520 (522)
T ss_pred HHHhhhhhheeCC
Confidence 9999999999774
No 23
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-89 Score=756.68 Aligned_cols=460 Identities=22% Similarity=0.340 Sum_probs=416.0
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcccc
Q 008181 34 KDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNK 113 (575)
Q Consensus 34 ~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd~ 113 (575)
++...+.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++||+
T Consensus 2 ~~~~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~----akll~~~a~~qd~ 77 (517)
T TIGR02342 2 QDKDKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPA----AKMLVELSKAQDI 77 (517)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChH----HHHHHHHHHHHHH
Confidence 455678889999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCC--CHHHHHHHHHHhcCC------c
Q 008181 114 AAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMIS--TPEEITQVATISANG------E 185 (575)
Q Consensus 114 ~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~--~~~~L~~va~ts~~~------~ 185 (575)
++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.+++.|+++++|++ +.+.|.++|+|++++ .
T Consensus 78 ~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~ 157 (517)
T TIGR02342 78 EAGDGTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVSQYS 157 (517)
T ss_pred HhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccchhHH
Confidence 99999999999999999999999999999999999999999999999999999987 788899999999875 3
Q ss_pred hHHHHHHHHHHHHhccc---C-------eEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeeccc
Q 008181 186 REIGELLARAMEKVGKE---G-------VITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDK 255 (575)
Q Consensus 186 ~~la~lv~ea~~~v~~~---~-------~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~ 255 (575)
++|++++++|+..++++ + .|.+..|++.+|+ ++++|++|+++|.++ ++||+.++||+|+++++
T Consensus 158 ~~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds-~li~Givl~k~~~~~------~~mpk~i~n~kI~ll~~ 230 (517)
T TIGR02342 158 SLLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDT-ELIEGLVFTQKASRS------AGGPTRIEKAKIGLIQF 230 (517)
T ss_pred HHHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhc-EEEeeEEEecccccc------CCCCccccCCcEEEEec
Confidence 57899999999999752 2 2455689998887 999999999999874 24778889999999988
Q ss_pred ccC-------------CH-----------HHHHHHHHHHHHhCCCEEEEecCc-----hHHHHHHHHHhhcccCceEEEE
Q 008181 256 KIS-------------DM-----------NSLVGLLELAVEKNRALLIVAEDV-----ERDALAMLILNKHHAGVKVCAI 306 (575)
Q Consensus 256 ~l~-------------~~-----------~~l~~~le~i~~~~~~lvI~~~~i-----~~~al~~l~~n~~~~~~~i~~v 306 (575)
+|+ ++ +++.++++++.+.|++|||++++| ++.++++|..+ +|++|
T Consensus 231 ~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~------~I~av 304 (517)
T TIGR02342 231 QISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKM------KIMVV 304 (517)
T ss_pred CCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhC------CceEE
Confidence 764 21 345678899999999999999999 78888877654 59999
Q ss_pred ecCCCCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCcceeEEE-Ee--eccEEEEecCCChhhHHHHHHHHHhhh
Q 008181 307 KAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVT-VS--VDDTIVLHGGGDKKLIEERCEEVCQTA 383 (575)
Q Consensus 307 k~~~~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~v~-~~--~~~~~~~~g~~~~~~i~~~~~~l~~~~ 383 (575)
+ ++++++|+|||++|||+++++ ++++++++||+|+.|+ +. ++.++++.++++
T Consensus 305 ~-----~v~~~~LerIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~--------------- 359 (517)
T TIGR02342 305 K-----DIEREEVEFICKTIGCKPIAS-----IDHFTADKLGSAELVEEVTTDGGKIIKITGIQN--------------- 359 (517)
T ss_pred e-----cCCHHHHHHHHHHHCCEEEcc-----hhhcCcccCcCCceEEEEEECCeEEEEEEccCC---------------
Confidence 8 458899999999999999999 8899999999999998 33 445667776532
Q ss_pred hccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhc
Q 008181 384 MGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKT 462 (575)
Q Consensus 384 l~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~ 462 (575)
+++++||+|||+|+.+++|++|+++||+++++++++++ +|||||++||+++.+|++++.
T Consensus 360 --------------------~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~ 419 (517)
T TIGR02342 360 --------------------AGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLAR 419 (517)
T ss_pred --------------------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHh
Confidence 24679999999999999999999999999999999985 999999999999999999877
Q ss_pred c-CchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcC---CCceeEecCCCcccccccCcccccHHHHHHHHHH
Q 008181 463 E-NEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQD---DVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALAD 538 (575)
Q Consensus 463 ~-~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~ 538 (575)
+ ++++|+++++|++||++||++|++|||+|+.+++++|+..| +.++|+|+.+|++.||++.|||||+.+|+++|++
T Consensus 420 ~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~ai~~ 499 (517)
T TIGR02342 420 TMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITDMLEEEVLQPLLVTTSAVTL 499 (517)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccchhhccceEcHHHHHHHHHH
Confidence 6 78999999999999999999999999999999999998866 4579999999999999999999999999999999
Q ss_pred HHHHHHHHhccchhhcc
Q 008181 539 AASVSLLFTTTEATVLV 555 (575)
Q Consensus 539 A~e~a~~iL~iD~iI~~ 555 (575)
|+|+|++|||||++|+.
T Consensus 500 A~e~a~~iL~iD~ii~~ 516 (517)
T TIGR02342 500 ASETVRMILKIDDIVFT 516 (517)
T ss_pred HHHHHHHHhcccceeec
Confidence 99999999999999975
No 24
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1e-89 Score=758.01 Aligned_cols=459 Identities=22% Similarity=0.338 Sum_probs=419.0
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhccccc
Q 008181 35 DINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNKA 114 (575)
Q Consensus 35 ~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd~~ 114 (575)
+...+.+++..|+.||..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++||++
T Consensus 2 ~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~----a~ll~~~a~~q~~~ 77 (515)
T cd03338 2 DKEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPA----AKMLVELSKAQDIE 77 (515)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHH----HHHHHHHHHHHHhH
Confidence 45677889999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCC--CHHHHHHHHHHhcCC------ch
Q 008181 115 AGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMIS--TPEEITQVATISANG------ER 186 (575)
Q Consensus 115 ~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~--~~~~L~~va~ts~~~------~~ 186 (575)
+||||||+|+|+++||+++.+++++|+||..|++||++|.+.+++.|++++++++ +.+.|.++|+|++++ ++
T Consensus 78 ~GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~ 157 (515)
T cd03338 78 AGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSS 157 (515)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHH
Confidence 9999999999999999999999999999999999999999999999999999986 788899999999984 57
Q ss_pred HHHHHHHHHHHHhcccCe----------EEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccc
Q 008181 187 EIGELLARAMEKVGKEGV----------ITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKK 256 (575)
Q Consensus 187 ~la~lv~ea~~~v~~~~~----------I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~ 256 (575)
+|++++++|+.++++++. |.++.|++++|+ ++++|++|+++|.+|++ ||+.++||++++++++
T Consensus 158 ~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds-~lv~Giv~~k~~~~~~~------~p~~i~n~ki~ll~~~ 230 (515)
T cd03338 158 LLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDT-ELVDGLVFTQKASKKAG------GPTRIEKAKIGLIQFC 230 (515)
T ss_pred HHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhc-eeeeeEEEeccccCcCC------CCccccCCcEEEEecc
Confidence 899999999999987652 677889999998 99999999999999753 3667789999888776
Q ss_pred cC-------------CH-----------HHHHHHHHHHHHhCCCEEEEecCc-----hHHHHHHHHHhhcccCceEEEEe
Q 008181 257 IS-------------DM-----------NSLVGLLELAVEKNRALLIVAEDV-----ERDALAMLILNKHHAGVKVCAIK 307 (575)
Q Consensus 257 l~-------------~~-----------~~l~~~le~i~~~~~~lvI~~~~i-----~~~al~~l~~n~~~~~~~i~~vk 307 (575)
|+ ++ +++.++++.+++.|++|||++++| ++.++++|..+ +|++|+
T Consensus 231 le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~------~I~av~ 304 (515)
T cd03338 231 LSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKL------KIMVVK 304 (515)
T ss_pred ccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHC------CceEEe
Confidence 53 22 346678899999999999999998 78888877653 689988
Q ss_pred cCCCCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCcceeEEEEee---ccEEEEecCCChhhHHHHHHHHHhhhh
Q 008181 308 APGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSV---DDTIVLHGGGDKKLIEERCEEVCQTAM 384 (575)
Q Consensus 308 ~~~~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~v~~~~---~~~~~~~g~~~~~~i~~~~~~l~~~~l 384 (575)
++++++|+|||++|||+++++ ++++++++||+|+.|++.+ ++++++.++.+
T Consensus 305 -----~~~~~~LerIa~~tGa~ii~s-----l~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~---------------- 358 (515)
T cd03338 305 -----DIEREEIEFICKTIGCKPVAS-----IDHFTEDKLGSADLVEEVSLGDGKIVKITGVKN---------------- 358 (515)
T ss_pred -----cCCHHHHHHHHHHHCCEEecc-----cccCCHhhCCCCceEEEEEECCeEEEEEEecCC----------------
Confidence 468899999999999999999 8999999999999998643 46777887542
Q ss_pred ccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc
Q 008181 385 GKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE 463 (575)
Q Consensus 385 ~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~ 463 (575)
+++++||+|||+|+.+++|++|+++||++++++++++| +|||||++||+|+.+|++++..
T Consensus 359 -------------------~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~ 419 (515)
T cd03338 359 -------------------PGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWART 419 (515)
T ss_pred -------------------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhcc
Confidence 13679999999999999999999999999999999999 9999999999999999998766
Q ss_pred -CchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcC---CCceeEecCCCcccccccCcccccHHHHHHHHHHH
Q 008181 464 -NEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQD---DVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADA 539 (575)
Q Consensus 464 -~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A 539 (575)
++++|+++++|++||+.||++|++|||+|+.+++++|+..| +.++|+|+.+|++.||++.|||||+.+|+++|+.|
T Consensus 420 ~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A 499 (515)
T cd03338 420 LTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLA 499 (515)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccchhhcCceecHHHHHHHHHHH
Confidence 78999999999999999999999999999999999998865 45799999999999999999999999999999999
Q ss_pred HHHHHHHhccchhhcc
Q 008181 540 ASVSLLFTTTEATVLV 555 (575)
Q Consensus 540 ~e~a~~iL~iD~iI~~ 555 (575)
+++|++||+||++|++
T Consensus 500 ~~~a~~iL~ID~ii~~ 515 (515)
T cd03338 500 TETVRMILKIDDIVLA 515 (515)
T ss_pred HHHHHHHhccchhhcC
Confidence 9999999999999863
No 25
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-90 Score=718.09 Aligned_cols=527 Identities=58% Similarity=0.879 Sum_probs=513.8
Q ss_pred chhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhccc
Q 008181 33 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATN 112 (575)
Q Consensus 33 ~~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd 112 (575)
.|++.||.++|...++++..|+++|..||||+|++++|.+..|.|+|||||.|+.+++.+.++++|+||+|+++++.+.+
T Consensus 16 ak~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN 95 (550)
T KOG0356|consen 16 AKDIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTN 95 (550)
T ss_pred ccccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchHHHHHH
Q 008181 113 KAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELL 192 (575)
Q Consensus 113 ~~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~la~lv 192 (575)
+.+||||||+++|++++..++.+-+.+|.+|.+|.+|+..+.+.+++.|+++++|+++.+++.+||.++.++|.++++++
T Consensus 96 ~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSAngD~~ig~li 175 (550)
T KOG0356|consen 96 EEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATISANGDKEIGNLI 175 (550)
T ss_pred CccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCeEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccccCCHHHHHHHHHHHHH
Q 008181 193 ARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVE 272 (575)
Q Consensus 193 ~ea~~~v~~~~~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~l~~~~~l~~~le~i~~ 272 (575)
.+|+.+++++|+|.++.|.++.|++++++||.|++||++|||++.++.+.++|++|++++++.++++++++.|.++...+
T Consensus 176 ~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ivp~LE~A~~ 255 (550)
T KOG0356|consen 176 SDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVPALELALA 255 (550)
T ss_pred HHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHHHhHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCeEeecCCC-CcccccCcccCccee
Q 008181 273 KNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRG-LTLDKVKEEMLGTAK 351 (575)
Q Consensus 273 ~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~~-~~~~~~~~~~lG~~~ 351 (575)
...||+|++++|+.++|..|+.|++++..++++||.|+||+.++..+.|++.+||+.++..+.+ +++++.+.++||.++
T Consensus 256 ~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~ 335 (550)
T KOG0356|consen 256 KRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVG 335 (550)
T ss_pred ccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcce
Confidence 9999999999999999999999999999999999999999999999999999999999999988 889999999999999
Q ss_pred EEEEeeccEEEEecCCChhhHHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHH
Q 008181 352 KVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDAL 431 (575)
Q Consensus 352 ~v~~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal 431 (575)
++.++.+.++++.+.+++.+++.||+++ +..+..+.+.|+.+++++|+++|+|++++|.|+|.|+.|++|++.+++|||
T Consensus 336 evvvtkd~t~ll~g~~~~~~v~~rIeqi-k~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dal 414 (550)
T KOG0356|consen 336 EVVVTKDDTMLLKGKGNKAQVEGRIEQI-KEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDAL 414 (550)
T ss_pred eEEEecCcceeeCCCCCHHHHHHHHHHH-HHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCcccCccHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcCCCceeE
Q 008181 432 NATRAAVEEGIVPGGGVALLYATKALENLKTE-NEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGF 510 (575)
Q Consensus 432 ~~~~~al~~gvvpGGGa~E~~l~~~L~~~~~~-~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~Gi 510 (575)
+++++++++|+|||||+++++|+..|..+... +..++.+++++.+||..|..+|++|||.|+..++.|++. ..+||
T Consensus 415 nat~aaveeGivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~---~~~gy 491 (550)
T KOG0356|consen 415 NATRAAVEEGIVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN---DDYGY 491 (550)
T ss_pred HHHHHHhhcCcccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh---hhhhh
Confidence 99999999999999999999999999887654 678899999999999999999999999999999999994 38999
Q ss_pred ecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHhccchhhccCCCCCCCC
Q 008181 511 DAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNSDDKNKP 563 (575)
Q Consensus 511 d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~~~~ 563 (575)
|..++++.||++.||+||+.|.+.+|..|..+|+++++++.+|...|++++.+
T Consensus 492 da~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvteipk~~~~~ 544 (550)
T KOG0356|consen 492 DAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKEEAGN 544 (550)
T ss_pred hhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEeccccccCC
Confidence 99999999999999999999999999999999999999999999999988443
No 26
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=2.2e-89 Score=756.33 Aligned_cols=462 Identities=24% Similarity=0.340 Sum_probs=420.4
Q ss_pred chhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecC-----CCCeEEecChHHHhccccccCccchhhhHHHHHH
Q 008181 33 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKS-----IGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQV 107 (575)
Q Consensus 33 ~~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~-----~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~ 107 (575)
..+...|.+++..|+.||..++++++|||||+||+|||++. .|+++|||||+||+|+|+++||. |+|++++
T Consensus 14 ~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~----akll~~~ 89 (533)
T PTZ00212 14 GAQEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPA----AKILVDI 89 (533)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHH----HHHHHHH
Confidence 35677889999999999999999999999999999999998 69999999999999999999997 9999999
Q ss_pred HhccccccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCC-----HHHHHHHHHHhc
Q 008181 108 AGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMIST-----PEEITQVATISA 182 (575)
Q Consensus 108 s~~qd~~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~-----~~~L~~va~ts~ 182 (575)
|++||+++||||||+|+|+++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++ .+.|.++|+|++
T Consensus 90 a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l 169 (533)
T PTZ00212 90 SKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTL 169 (533)
T ss_pred HHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999864 567999999887
Q ss_pred CC------chHHHHHHHHHHHHhccc----C-eEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceee
Q 008181 183 NG------EREIGELLARAMEKVGKE----G-VITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLIL 251 (575)
Q Consensus 183 ~~------~~~la~lv~ea~~~v~~~----~-~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIl 251 (575)
++ .+.|++++++|+..+... . .+.+.+|++++|+ ++++|+++++.+.++ |+++++||+|+
T Consensus 170 ~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds-~lv~G~v~~~~~~~~--------~~~~i~n~kIl 240 (533)
T PTZ00212 170 SSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDS-YLEDGFILEKKIGVG--------QPKRLENCKIL 240 (533)
T ss_pred cccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcccc-EEEEeEEEecccCCC--------CCccccCCcEE
Confidence 65 378999999999888432 1 3677899999998 999999999987542 67889999999
Q ss_pred eccccc--------------CCHHHH-----------HHHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEE
Q 008181 252 IYDKKI--------------SDMNSL-----------VGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAI 306 (575)
Q Consensus 252 l~d~~l--------------~~~~~l-----------~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~v 306 (575)
++|++| ++++++ .++++.+.+.|+++++++++|++.++++|.++ +|++|
T Consensus 241 l~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~------~I~av 314 (533)
T PTZ00212 241 VANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEA------GIMAI 314 (533)
T ss_pred EEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC------CCEEE
Confidence 999986 444443 33577888999999999999999999999876 48999
Q ss_pred ecCCCCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCcceeEEE---EeeccEEEEecCCChhhHHHHHHHHHhhh
Q 008181 307 KAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVT---VSVDDTIVLHGGGDKKLIEERCEEVCQTA 383 (575)
Q Consensus 307 k~~~~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~v~---~~~~~~~~~~g~~~~~~i~~~~~~l~~~~ 383 (575)
|+ +++++++|||++|||+++++ ++++++++||+|+.|+ ++++++++|++|..
T Consensus 315 r~-----v~~~~l~rIa~~tGa~iis~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~--------------- 369 (533)
T PTZ00212 315 EH-----ADFDGMERLAAALGAEIVST-----FDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAK--------------- 369 (533)
T ss_pred ec-----CCHHHHHHHHHHhCCEEeec-----CCCCCHHHccCCceEEEEEECCeEEEEEEccCC---------------
Confidence 84 36689999999999999999 8999999999999998 56788999988642
Q ss_pred hccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhc
Q 008181 384 MGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKT 462 (575)
Q Consensus 384 l~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~ 462 (575)
+++|||+|||+|+.+++|+||+++||++++++++++| +||||||+|++++..|+++++
T Consensus 370 ---------------------~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~ 428 (533)
T PTZ00212 370 ---------------------GEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAK 428 (533)
T ss_pred ---------------------CCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHh
Confidence 3579999999999999999999999999999999998 999999999999999999977
Q ss_pred c-CchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcC---CCceeEecCCCcccccccCcccccHHHHHHHHHH
Q 008181 463 E-NEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQD---DVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALAD 538 (575)
Q Consensus 463 ~-~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~ 538 (575)
. ++++++++++|++||++||++|++|||+|+.+++.+|+..| +.++|+|+.+|++.||++.|||||+.+|+++|+.
T Consensus 429 ~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~ 508 (533)
T PTZ00212 429 KVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCS 508 (533)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCcccchhhccceecHHHHHHHHHH
Confidence 6 78999999999999999999999999999999999998765 4579999999999999999999999999999999
Q ss_pred HHHHHHHHhccchhhccCCCC
Q 008181 539 AASVSLLFTTTEATVLVNSDD 559 (575)
Q Consensus 539 A~e~a~~iL~iD~iI~~~~~~ 559 (575)
|+|+|++||+||++|...|++
T Consensus 509 A~e~a~~iL~id~ii~~~~~~ 529 (533)
T PTZ00212 509 ATEAAEMILRVDDIIRCAPRQ 529 (533)
T ss_pred HHHHHHHHHhhhHhhhcCCcc
Confidence 999999999999999986533
No 27
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.8e-89 Score=753.51 Aligned_cols=460 Identities=26% Similarity=0.350 Sum_probs=418.2
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecC--CCCeEEecChHHHhccccccCccchhhhHHHHHHHhcc
Q 008181 34 KDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKS--IGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGAT 111 (575)
Q Consensus 34 ~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~--~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~q 111 (575)
.+...|.+++..|+.||..++++++|||||+||+|||++. +|+++|||||+||+++|+++||. |+|++++|++|
T Consensus 6 ~~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~q 81 (517)
T cd03336 6 AQEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPA----AKVLVDISKVQ 81 (517)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChH----HHHHHHHHHHH
Confidence 3567789999999999999999999999999999999998 59999999999999999999997 99999999999
Q ss_pred ccccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCC-----CHHHHHHHHHHhcCC--
Q 008181 112 NKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMIS-----TPEEITQVATISANG-- 184 (575)
Q Consensus 112 d~~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~-----~~~~L~~va~ts~~~-- 184 (575)
|+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|++ +.+.|.++|+|++++
T Consensus 82 d~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~ 161 (517)
T cd03336 82 DDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKI 161 (517)
T ss_pred HhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccc
Confidence 9999999999999999999999999999999999999999999999999999999884 256799999988754
Q ss_pred ----chHHHHHHHHHHHHhccc----C-eEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeeccc
Q 008181 185 ----EREIGELLARAMEKVGKE----G-VITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDK 255 (575)
Q Consensus 185 ----~~~la~lv~ea~~~v~~~----~-~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~ 255 (575)
+++|++++++|+..++.. . .|.+.+|++++|+ ++++|+++++.+.++ |+++++||+|+++|+
T Consensus 162 ~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds-~l~~G~v~~~~~~~~--------~~~~~~n~kIli~~~ 232 (517)
T cd03336 162 LTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDS-YLDEGFLLDKKIGVN--------QPKRIENAKILIANT 232 (517)
T ss_pred cchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCccce-EEEeeEEEecccCCC--------CCCeeccccEEEEec
Confidence 578999999999998532 1 3667789999998 899999999986542 578899999999999
Q ss_pred ccC--------------CHHHH-----------HHHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCC
Q 008181 256 KIS--------------DMNSL-----------VGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPG 310 (575)
Q Consensus 256 ~l~--------------~~~~l-----------~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~ 310 (575)
+|+ +++++ .++++.+.+.|++++++++.|++.++++|.++ +|++|+++
T Consensus 233 ~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~------~I~av~~v- 305 (517)
T cd03336 233 PMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADA------GIMAIEHA- 305 (517)
T ss_pred CCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC------CcEEEecC-
Confidence 765 44443 33577888999999999999999999999766 48999977
Q ss_pred CCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCcceeEEEE---eeccEEEEecCCChhhHHHHHHHHHhhhhccC
Q 008181 311 FGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTV---SVDDTIVLHGGGDKKLIEERCEEVCQTAMGKS 387 (575)
Q Consensus 311 ~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~v~~---~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~ 387 (575)
++++|+|||++|||+++++ ++++++++||+|+.|+. +++++++|.+|++
T Consensus 306 ----~~~~L~rIa~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~------------------- 357 (517)
T cd03336 306 ----DFDGVERLALVTGGEIAST-----FDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAA------------------- 357 (517)
T ss_pred ----CHHHHHHHHHHhCCEEecc-----cCCCCcccccccceEEEEEECCeEEEEEEccCC-------------------
Confidence 4557999999999999999 89999999999999984 4578889988653
Q ss_pred cchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc-Cc
Q 008181 388 AATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE-NE 465 (575)
Q Consensus 388 ~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~-~~ 465 (575)
++.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++||+++.+|++++.+ ++
T Consensus 358 -----------------~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~ 420 (517)
T cd03336 358 -----------------GEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPG 420 (517)
T ss_pred -----------------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCC
Confidence 2568999999999999999999999999999999998 9999999999999999999776 78
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcC---CCceeEecCCCcccccccCcccccHHHHHHHHHHHHHH
Q 008181 466 DQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQD---DVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASV 542 (575)
Q Consensus 466 ~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~ 542 (575)
++|+++++|++||+.||++||+|||+|+.+++.+|++.| +.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+
T Consensus 421 ~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~ 500 (517)
T cd03336 421 KKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEA 500 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998866 45799999999999999999999999999999999999
Q ss_pred HHHHhccchhhccCCC
Q 008181 543 SLLFTTTEATVLVNSD 558 (575)
Q Consensus 543 a~~iL~iD~iI~~~~~ 558 (575)
|++||+||++|+.+|+
T Consensus 501 a~~iL~id~ii~~~~~ 516 (517)
T cd03336 501 AEMILRVDDIIKCAPR 516 (517)
T ss_pred HHHHHhHhHHhhcCCC
Confidence 9999999999998764
No 28
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.6e-89 Score=754.47 Aligned_cols=460 Identities=22% Similarity=0.320 Sum_probs=420.1
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcccc
Q 008181 34 KDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNK 113 (575)
Q Consensus 34 ~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd~ 113 (575)
.+..+|.+++..|+++|..++++|+|||||+||+|||++..| ++|||||+||+++|+++||+ |+|++++|++||+
T Consensus 11 ~~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~----a~ll~~~a~~q~~ 85 (522)
T TIGR02345 11 TDTSQGKGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPA----AKTLVDIAKSQDS 85 (522)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChH----HHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999989 99999999999999999999 9999999999999
Q ss_pred ccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCC-----CHHHHHHHHHHhcC-----
Q 008181 114 AAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMIS-----TPEEITQVATISAN----- 183 (575)
Q Consensus 114 ~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~-----~~~~L~~va~ts~~----- 183 (575)
++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|++ +.+.|.++|+|+++
T Consensus 86 ~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~ 165 (522)
T TIGR02345 86 EVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIA 165 (522)
T ss_pred HhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999987 45789999999987
Q ss_pred -CchHHHHHHHHHHHHhcccC------eEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccc
Q 008181 184 -GEREIGELLARAMEKVGKEG------VITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKK 256 (575)
Q Consensus 184 -~~~~la~lv~ea~~~v~~~~------~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~ 256 (575)
++++|++++++|+.++++++ .|.+.+|++++|+ ++++|++|+++|.+|+|. .|++.++||+|+++|++
T Consensus 166 ~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds-~~v~Giv~~~~~~~~~~~----~~~~~~~n~kIll~~~~ 240 (522)
T TIGR02345 166 HEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDS-VLVNGVAFKKTFSYAGFE----QQPKKFANPKILLLNVE 240 (522)
T ss_pred chHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHHhc-ceecceEEecccCccccc----cCCceeccceEEEEecC
Confidence 46899999999999997642 3566689999998 899999999999999874 46788999999999998
Q ss_pred cC-------------CHHH-----------HHHHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCC
Q 008181 257 IS-------------DMNS-----------LVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFG 312 (575)
Q Consensus 257 l~-------------~~~~-----------l~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~ 312 (575)
|+ ++++ +...++.+.+.|+++++++++|++.++++|.++ +|+++++
T Consensus 241 Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~------~I~~~~~---- 310 (522)
T TIGR02345 241 LELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADH------NIFCAGR---- 310 (522)
T ss_pred cccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHC------CcEEEec----
Confidence 74 2333 345567788889999999999999999999876 4788764
Q ss_pred CcchhHHHHHHHHhCCeEeecCCCCcccccCcccCcceeEEEEe---eccEEEEecCCChhhHHHHHHHHHhhhhccCcc
Q 008181 313 DNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVS---VDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAA 389 (575)
Q Consensus 313 ~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~v~~~---~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~ 389 (575)
+..+++++++++|||+++++ ++++++++||+|+.|+.. ++++.+|+|++++
T Consensus 311 -v~~~dl~ria~~tga~ii~~-----~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~-------------------- 364 (522)
T TIGR02345 311 -VSDEDLKRVVKACGGSIQST-----TSDLEADVLGTCALFEERQIGSERYNYFTGCPHA-------------------- 364 (522)
T ss_pred -CCHHHHHHHHHHhCCeEEcc-----hhhCChhhccCCceEEEEEECCeEEEEEEcCCCC--------------------
Confidence 56789999999999999999 899999999999999853 4678888876432
Q ss_pred hhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc-Cchh
Q 008181 390 TFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE-NEDQ 467 (575)
Q Consensus 390 ~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~-~~~~ 467 (575)
.++||+|||+|+.+++|++|+++||+++++++++++ +|||||++||+++.+|++++.. ++++
T Consensus 365 ----------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~ 428 (522)
T TIGR02345 365 ----------------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQ 428 (522)
T ss_pred ----------------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHH
Confidence 368999999999999999999999999999999985 9999999999999999998766 7899
Q ss_pred HHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcC---CCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHH
Q 008181 468 RRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQD---DVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSL 544 (575)
Q Consensus 468 ~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~ 544 (575)
++++++|++||++||++||+|||+|+.+++.+|++.| +.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|+
T Consensus 429 ~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~ 508 (522)
T TIGR02345 429 QLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTEDIGDNFENFVWEPLLVKKNALKAAFEAAC 508 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998865 3469999999999999999999999999999999999999
Q ss_pred HHhccchhhcc
Q 008181 545 LFTTTEATVLV 555 (575)
Q Consensus 545 ~iL~iD~iI~~ 555 (575)
+||++|++|+.
T Consensus 509 ~iL~id~ii~~ 519 (522)
T TIGR02345 509 TILSIDETIMN 519 (522)
T ss_pred HHHhHHHHHhC
Confidence 99999999976
No 29
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-88 Score=749.84 Aligned_cols=464 Identities=19% Similarity=0.301 Sum_probs=416.5
Q ss_pred hhcccH-HHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcccc
Q 008181 35 DINFGV-GARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNK 113 (575)
Q Consensus 35 ~~~~g~-~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd~ 113 (575)
+..+|. +++..|+.+|..|+++|+|||||+||+|||++..|+++|||||+||+|+|+++||+ ++|++++|++||+
T Consensus 11 ~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~----akll~e~a~sqd~ 86 (531)
T TIGR02346 11 RHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPA----AKLLVMASEMQEN 86 (531)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHH----HHHHHHHHHHHhh
Confidence 455664 59999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcc-cCC---CHHHHHHHHHHhcCC-----
Q 008181 114 AAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQ-MIS---TPEEITQVATISANG----- 184 (575)
Q Consensus 114 ~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~-~v~---~~~~L~~va~ts~~~----- 184 (575)
++||||||+|+|+++||+++.+++++|+||..|++||+.|++.+++.|+++++ ++. +.+.|.++++|++++
T Consensus 87 ~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~ 166 (531)
T TIGR02346 87 EIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGN 166 (531)
T ss_pred hhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCch
Confidence 99999999999999999999999999999999999999999999999999986 664 477899999988753
Q ss_pred chHHHHHHHHHHHHhcccC--e-------EEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeeccc
Q 008181 185 EREIGELLARAMEKVGKEG--V-------ITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDK 255 (575)
Q Consensus 185 ~~~la~lv~ea~~~v~~~~--~-------I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~ 255 (575)
+++|++++++|+.++++++ . |.+..|++.+|+ ++++|++|++++. .+++.++||||+++++
T Consensus 167 ~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds-~li~Gi~~~~~~~---------~~~k~i~n~kI~l~~~ 236 (531)
T TIGR02346 167 EDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNS-EVLKGMVFNREAE---------GSVKRVKNAKVAVFSC 236 (531)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhc-eeEeeeEEeccCC---------CCceeccCCCEEEEec
Confidence 7899999999999998653 2 455689999986 9999999999842 1467889999999988
Q ss_pred ccC-------------CH-----------HHHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCC
Q 008181 256 KIS-------------DM-----------NSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGF 311 (575)
Q Consensus 256 ~l~-------------~~-----------~~l~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~ 311 (575)
+++ ++ +++.++++.+.+.|++|||++++|++.++++|..+ +|++|+++++
T Consensus 237 ~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~------~I~av~~~~~ 310 (531)
T TIGR02346 237 PLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKY------NIMVLKIPSK 310 (531)
T ss_pred CcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHC------CcEEEecCCH
Confidence 652 22 24567889999999999999999999999999754 5999998754
Q ss_pred CCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCcceeEEEEe---eccEEEEecCCChhhHHHHHHHHHhhhhccCc
Q 008181 312 GDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVS---VDDTIVLHGGGDKKLIEERCEEVCQTAMGKSA 388 (575)
Q Consensus 312 ~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~v~~~---~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~ 388 (575)
.+|+|||.+|||+++++ ++++++++||+|+.|++. ++++.++.++..
T Consensus 311 -----~~l~~Ia~~tGa~ii~~-----l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~-------------------- 360 (531)
T TIGR02346 311 -----FELRRLCKTVGATPLAR-----LGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENG-------------------- 360 (531)
T ss_pred -----HHHHHHHHHHCCEEecc-----cccCCHhHccccceEEEEEECCEEEEEEEccCC--------------------
Confidence 47999999999999999 888999999999999864 357777776431
Q ss_pred chhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc-Cch
Q 008181 389 ATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE-NED 466 (575)
Q Consensus 389 ~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~-~~~ 466 (575)
.++++||+|||+|+.+++|++|+++||++++++++++| +|||||++||+++.+|++++.. +++
T Consensus 361 ---------------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~ 425 (531)
T TIGR02346 361 ---------------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGL 425 (531)
T ss_pred ---------------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCH
Confidence 24679999999999999999999999999999999999 9999999999999999998766 789
Q ss_pred hHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcC---CCceeEecCCCc--ccccccCcccccHHHHHHHHHHHHH
Q 008181 467 QRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQD---DVNFGFDAAKGE--YVDMVKAGIIDPLKVVRTALADAAS 541 (575)
Q Consensus 467 ~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~---~~~~Gid~~~g~--i~d~~~~gI~dp~~vk~~~l~~A~e 541 (575)
+++++++|++||+.||++||+|||+|+.+++.+|+..| +.++|+|+.+|+ +.||++.|||||+.||+++|+.|+|
T Consensus 426 ~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e 505 (531)
T TIGR02346 426 DQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKLATE 505 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCccccChhhcCceEcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998875 457999999999 5999999999999999999999999
Q ss_pred HHHHHhccchhhccCCCCCCCC
Q 008181 542 VSLLFTTTEATVLVNSDDKNKP 563 (575)
Q Consensus 542 ~a~~iL~iD~iI~~~~~~~~~~ 563 (575)
+|++|||||++|...|...|.+
T Consensus 506 ~a~~iL~id~ii~~~~~~~~~~ 527 (531)
T TIGR02346 506 AAVTVLRVDQIIMAKPAGGPKP 527 (531)
T ss_pred HHHHHhhhhHhhccCCCCCCCC
Confidence 9999999999999887655555
No 30
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.1e-89 Score=744.41 Aligned_cols=440 Identities=21% Similarity=0.331 Sum_probs=406.6
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcccc
Q 008181 34 KDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNK 113 (575)
Q Consensus 34 ~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd~ 113 (575)
.+...|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||. |+|++++|++||+
T Consensus 9 ~~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~q~~ 84 (480)
T cd03337 9 TKRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPA----AKSMIELSRTQDE 84 (480)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHhHHH
Confidence 457789999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred ccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCC--CHHHHHHHHHHhcCC------c
Q 008181 114 AAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMIS--TPEEITQVATISANG------E 185 (575)
Q Consensus 114 ~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~--~~~~L~~va~ts~~~------~ 185 (575)
++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ +.+.|.++++|++++ +
T Consensus 85 ~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~ 164 (480)
T cd03337 85 EVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWS 164 (480)
T ss_pred HhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhHH
Confidence 99999999999999999999999999999999999999999999999999999987 788899999999884 4
Q ss_pred hHHHHHHHHHHHHhccc--C-----------eEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeee
Q 008181 186 REIGELLARAMEKVGKE--G-----------VITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILI 252 (575)
Q Consensus 186 ~~la~lv~ea~~~v~~~--~-----------~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll 252 (575)
+.|++++++|+..++++ + .|++.+|++.+|+ ++++|++|++++.+| .|+++++||+|++
T Consensus 165 ~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds-~li~Gvvi~k~~~~~-------~m~~~~~n~kIll 236 (480)
T cd03337 165 DLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDS-RVLDGVMLNKDVTHP-------KMRRRIENPRIVL 236 (480)
T ss_pred HHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhc-ccccceEEeccCCCC-------CCCcEecCCCEEE
Confidence 78999999999999753 2 1456679999986 999999999999886 4788999999999
Q ss_pred cccccCCHHHHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCeEee
Q 008181 253 YDKKISDMNSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIIS 332 (575)
Q Consensus 253 ~d~~l~~~~~l~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis 332 (575)
++++|+. |||++++|++.++++|.++ +|++|++ +++++|+|||++|||++++
T Consensus 237 l~~~Le~-----------------lvi~~k~I~d~al~~L~~~------~I~~v~~-----v~~~~L~rIa~~tGa~ii~ 288 (480)
T cd03337 237 LDCPLEY-----------------LVITEKGVSDLAQHYLVKA------GITALRR-----VRKTDNNRIARACGATIVN 288 (480)
T ss_pred EecCcce-----------------EEEeCCCccHHHHHHHHHC------CcEEEEe-----CCHHHHHHHHHHHCCEEec
Confidence 9999875 9999999999999999887 4889884 5788999999999999999
Q ss_pred cCCCCcccccCcccCcc-eeEEEE---eeccEEEEecCCChhhHHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeE
Q 008181 333 EDRGLTLDKVKEEMLGT-AKKVTV---SVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVA 408 (575)
Q Consensus 333 ~~~~~~~~~~~~~~lG~-~~~v~~---~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~ 408 (575)
+ ++++++++||+ |+.++. ++++++++++|+++ +.+
T Consensus 289 ~-----~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~------------------------------------~~~ 327 (480)
T cd03337 289 R-----PEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP------------------------------------KAC 327 (480)
T ss_pred c-----hhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC------------------------------------CEE
Confidence 9 88999999999 555553 34678888886543 468
Q ss_pred EEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHhHHHHHHH
Q 008181 409 VFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE-NEDQRRGIHIIQNALKAPTLTIA 486 (575)
Q Consensus 409 tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~-~~~~~~~i~~~a~AL~~ip~~L~ 486 (575)
||+|||+|+.+++|.+|+++||+++++++++++ +|||||++||+++++|++++.+ ++++|+++++|++||++||++||
T Consensus 328 TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La 407 (480)
T cd03337 328 TILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLA 407 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999996 9999999999999999998876 78999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHhcC----CCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHhccchhhc
Q 008181 487 SNAGFDGSTIIGKLLEQD----DVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVL 554 (575)
Q Consensus 487 ~NaG~d~~~~l~~l~~~~----~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~ 554 (575)
+|||+|+.+++.+|++.| +.++|+|+.+|++.||++.|||||+.+|+++|++|+|+|++|||||++|.
T Consensus 408 ~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 408 QNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred HHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 999999999999999876 35699999999999999999999999999999999999999999999985
No 31
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.4e-88 Score=741.89 Aligned_cols=460 Identities=24% Similarity=0.338 Sum_probs=415.2
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCC--CCeEEecChHHHhccccccCccchhhhHHHHHHHhcc
Q 008181 34 KDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSI--GNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGAT 111 (575)
Q Consensus 34 ~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~--g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~q 111 (575)
.+...|.+++..|++|+..++++++|||||+||+|||+++. |+++|||||+||+++|+++||. |+|++++|++|
T Consensus 7 ~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~----akll~~~a~~q 82 (519)
T TIGR02341 7 AQEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPA----AKVLVDMSKVQ 82 (519)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChH----HHHHHHHHHHh
Confidence 35677899999999999999999999999999999999985 9999999999999999999997 99999999999
Q ss_pred ccccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCC-----HHHHHHHHHHhcCC--
Q 008181 112 NKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMIST-----PEEITQVATISANG-- 184 (575)
Q Consensus 112 d~~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~-----~~~L~~va~ts~~~-- 184 (575)
|+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|+++ .++|.++|+|++++
T Consensus 83 d~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski 162 (519)
T TIGR02341 83 DDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKI 162 (519)
T ss_pred HhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999853 46899999998875
Q ss_pred ----chHHHHHHHHHHHHhccc---C--eEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeeccc
Q 008181 185 ----EREIGELLARAMEKVGKE---G--VITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDK 255 (575)
Q Consensus 185 ----~~~la~lv~ea~~~v~~~---~--~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~ 255 (575)
.+.|++++++|+..+... . .|.+.+|++++|+ ++++|+++++.+.++ |+++++||+|+++|+
T Consensus 163 ~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s-~l~~G~v~~~~~~~~--------~~~~~~n~~Ili~~~ 233 (519)
T TIGR02341 163 LSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDS-YLDEGFLLEKKIGVN--------QPKRIENAKILIANT 233 (519)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcccc-eEEeeEEEeccCCCC--------CceeeccccEEEEec
Confidence 367899999999887431 1 2455589999998 899999999986542 577899999999999
Q ss_pred ccCC--------------HHHH-----------HHHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCC
Q 008181 256 KISD--------------MNSL-----------VGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPG 310 (575)
Q Consensus 256 ~l~~--------------~~~l-----------~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~ 310 (575)
+|+. ++++ .++++.+.+.|++++++++.|++.++++|..+ +|+++++++
T Consensus 234 ~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~------~I~~v~~~~ 307 (519)
T TIGR02341 234 PMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADA------GVMAIEHAD 307 (519)
T ss_pred CCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHC------CcEEEecCC
Confidence 7752 3222 23467888999999999999999999999766 589999874
Q ss_pred CCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCcceeEEEE---eeccEEEEecCCChhhHHHHHHHHHhhhhccC
Q 008181 311 FGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTV---SVDDTIVLHGGGDKKLIEERCEEVCQTAMGKS 387 (575)
Q Consensus 311 ~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~v~~---~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~ 387 (575)
+.+|+|||++|||+++++ +++++++++|+|+.|+. +++++++|.+|++
T Consensus 308 -----~~~l~~ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~------------------- 358 (519)
T TIGR02341 308 -----FEGIERLALVTGGEIVST-----FDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKL------------------- 358 (519)
T ss_pred -----HHHHHHHHHHhCCEEecc-----cccCCccccccCceEEEEEECCEEEEEEEcCCC-------------------
Confidence 558999999999999999 88999999999999974 4578888988653
Q ss_pred cchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc-Cc
Q 008181 388 AATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE-NE 465 (575)
Q Consensus 388 ~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~-~~ 465 (575)
++++||+|||+|+.+++|++|+++||+++++++++++ +||||||+||+++..|++++.. ++
T Consensus 359 -----------------~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~ 421 (519)
T TIGR02341 359 -----------------GEACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPG 421 (519)
T ss_pred -----------------CCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCC
Confidence 2569999999999999999999999999999999996 9999999999999999998776 78
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcC---CCceeEecCCCcccccccCcccccHHHHHHHHHHHHHH
Q 008181 466 DQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQD---DVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASV 542 (575)
Q Consensus 466 ~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~ 542 (575)
++++++++|++||+.||++||+|||+|+.+++.+|++.| +.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+
T Consensus 422 ~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~ 501 (519)
T TIGR02341 422 KEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIESYKVKRAVVSSAAEA 501 (519)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCcccchhhccceEcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876 45699999999999999999999999999999999999
Q ss_pred HHHHhccchhhccCCC
Q 008181 543 SLLFTTTEATVLVNSD 558 (575)
Q Consensus 543 a~~iL~iD~iI~~~~~ 558 (575)
|++||+||++|+.+|+
T Consensus 502 a~~iL~id~ii~~~~~ 517 (519)
T TIGR02341 502 AEVILRVDNIIKAAPR 517 (519)
T ss_pred HHHHHhHHHHHhcCCC
Confidence 9999999999999874
No 32
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-89 Score=739.87 Aligned_cols=471 Identities=40% Similarity=0.609 Sum_probs=411.6
Q ss_pred cchhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcc
Q 008181 32 VAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGAT 111 (575)
Q Consensus 32 ~~~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~q 111 (575)
+.+...+|.++|..|+.|+..|+++|++||||+||||||+++.|+++|||||+||+|+|+++||. |+|++++|.+|
T Consensus 2 ~~~~~~~~~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~----akll~eva~~q 77 (524)
T COG0459 2 MGKERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPG----AKLLVEVAKKQ 77 (524)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCch----hHHHHHHHHHH
Confidence 46888999999999999999999999999999999999999977999999999999999998887 99999999999
Q ss_pred ccccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHH-----hcCCch
Q 008181 112 NKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATI-----SANGER 186 (575)
Q Consensus 112 d~~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~L~~va~t-----s~~~~~ 186 (575)
|+++||||||+|||+++||+++.+++++|+||..|++||++|.+.++++|++.++++++.+.-.+++.+ +.++++
T Consensus 78 d~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~~~~~t~v~sk~~~~~~ 157 (524)
T COG0459 78 DDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEELKIAITSVASKSANSDE 157 (524)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhhheeeeeeccChH
Confidence 999999999999999999999999999999999999999999999999999999999854411144444 445568
Q ss_pred HHHHHHHHHHHHhcc-----cCeEEE-ecCCcccceEEEEeceEEeecccCCCCccCcCCCc-eeccCceeeecccccCC
Q 008181 187 EIGELLARAMEKVGK-----EGVITV-VDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQK-CELENPLILIYDKKISD 259 (575)
Q Consensus 187 ~la~lv~ea~~~v~~-----~~~I~~-~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~-~~l~~~kIll~d~~l~~ 259 (575)
+|++++++|+.+++. ++++.+ +.|++.+| +++++|++|+++|.+||| |+ +.++||+|+++|++|+.
T Consensus 158 ~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e-~~vveG~~~dkg~~s~~~------~~~~~~e~~~Ili~d~~l~~ 230 (524)
T COG0459 158 EIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETE-LEVVEGMVFDKGYLSPYF------MPDKRLENPKILLLDKKLEI 230 (524)
T ss_pred HHHHHHHHHHHHhcccccccCCeEEEEecCCCccc-eEEEeeEEecCCccCCCC------CCccccccceEEEEcccccc
Confidence 999999999999998 666544 45666665 499999999999999987 56 78899999999998753
Q ss_pred H-------------H------------HHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCC
Q 008181 260 M-------------N------------SLVGLLELAVEKNRA-LLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGD 313 (575)
Q Consensus 260 ~-------------~------------~l~~~le~i~~~~~~-lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~ 313 (575)
. + .+..+++.+.+.|.+ +++++++|+|.++++|.++ .|++++.
T Consensus 231 ~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~------~Ilt~~~----- 299 (524)
T COG0459 231 KKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDI------AILTGRR----- 299 (524)
T ss_pred ccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhh------cceecce-----
Confidence 2 1 134456667778888 7888899999999988765 3777664
Q ss_pred cchhHH-HHHHHHhCCeEeecCCCCcccccCcccCcc--eeEEEEeeccEEEEecCCChhhHHHHHHHHHhhhhccCcch
Q 008181 314 NRRANL-DDLAILTGGEIISEDRGLTLDKVKEEMLGT--AKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAAT 390 (575)
Q Consensus 314 ~~~~~l-e~la~~tGa~iis~~~~~~~~~~~~~~lG~--~~~v~~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~ 390 (575)
+.++++ ++|+.++||++++. +++.+...+|. |+.|+... .++
T Consensus 300 v~~~dl~~~l~~~~ga~~v~~-----~~d~t~~~~G~~~~~~ve~~~------------------------------~~~ 344 (524)
T COG0459 300 VKKEDLGERLAKLGGAKIVSV-----LKDLTTIVLGEGAAGLVEETK------------------------------TGD 344 (524)
T ss_pred ecchhhHHHHHHccCceEEee-----cccCceeecCccccceEEEee------------------------------ccc
Confidence 456677 79999999999988 88888888998 88877432 122
Q ss_pred hhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc-Cc-hh
Q 008181 391 FDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE-NE-DQ 467 (575)
Q Consensus 391 ~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~-~~-~~ 467 (575)
|++.++.+|.+. .++++||+|||+|+++++|++|++||||+++++++++| +|||||++|++++..|++|+.. ++ ++
T Consensus 345 ~~~~~~~~~~~~-~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e 423 (524)
T COG0459 345 YDMEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDE 423 (524)
T ss_pred hhhhhhhhhhhc-CCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHH
Confidence 334455566666 68899999999999999999999999999999999999 9999999999999999998433 55 99
Q ss_pred HHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcCC-CceeEecCCCcc-cccccCcccccHHHHHHHHHHHHHHHHH
Q 008181 468 RRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDD-VNFGFDAAKGEY-VDMVKAGIIDPLKVVRTALADAASVSLL 545 (575)
Q Consensus 468 ~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~~-~~~Gid~~~g~i-~d~~~~gI~dp~~vk~~~l~~A~e~a~~ 545 (575)
|+++++|++||+.||++|++|||+|+.+++.+|++.|+ +++|+|+.++++ .||++.|||||+.||+++|++|+++|.+
T Consensus 424 ~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~l 503 (524)
T COG0459 424 QLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGL 503 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcccCCccceeccCCccccchHhccCcChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999886 559999999999 7799999999999999999999999999
Q ss_pred HhccchhhccCCCCC
Q 008181 546 FTTTEATVLVNSDDK 560 (575)
Q Consensus 546 iL~iD~iI~~~~~~~ 560 (575)
||++|++|...|+++
T Consensus 504 lL~~d~iI~~~~~~~ 518 (524)
T COG0459 504 LLTIDDIIAAKPEEK 518 (524)
T ss_pred HHHHHHhhccCCccc
Confidence 999999999988874
No 33
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.6e-86 Score=722.27 Aligned_cols=439 Identities=20% Similarity=0.294 Sum_probs=402.1
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhccccccCC
Q 008181 38 FGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNKAAGD 117 (575)
Q Consensus 38 ~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd~~~GD 117 (575)
.+++++..|+++|..|+++++|||||+||+|||++..|+++|||||+||+++|+++||+ ++|+++++++||+++||
T Consensus 5 ~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~~~~~~GD 80 (472)
T cd03341 5 GLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPA----AKLLVMASQMQEEEIGD 80 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHH----HHHHHHHHHHHhhhhCC
Confidence 45789999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhccc-CC---CHHHHHHHHHHhcCC-----chHH
Q 008181 118 GTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQM-IS---TPEEITQVATISANG-----EREI 188 (575)
Q Consensus 118 GTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~-v~---~~~~L~~va~ts~~~-----~~~l 188 (575)
||||+|+|+++||+++.+++++|+||..|++||+.|.+.+++.|++++++ +. +.+.+.++++|++++ +++|
T Consensus 81 GTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l 160 (472)
T cd03341 81 GTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFL 160 (472)
T ss_pred ChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchHHHH
Confidence 99999999999999999999999999999999999999999999999865 43 466788999988643 5799
Q ss_pred HHHHHHHHHHhccc--Ce-------EEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccccCC
Q 008181 189 GELLARAMEKVGKE--GV-------ITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISD 259 (575)
Q Consensus 189 a~lv~ea~~~v~~~--~~-------I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~l~~ 259 (575)
++++++|+.+++++ +. |.+.+|++.+|+ ++++|++|++.+. .++++++||+|+++|++|+.
T Consensus 161 ~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds-~lv~Giv~~~~~~---------~~~~~~~n~~Ili~~~~Le~ 230 (472)
T cd03341 161 SPLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDS-KVVRGMVFKREPE---------GSVKRVKKAKVAVFSCPFDI 230 (472)
T ss_pred HHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccc-eEEeeEEEccccC---------CCceeccCCcEEEEeccccC
Confidence 99999999999864 32 556789999998 9999999987532 24578899999999999876
Q ss_pred HHHHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCeEeecCCCCcc
Q 008181 260 MNSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTL 339 (575)
Q Consensus 260 ~~~l~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~~~~~ 339 (575)
|++|||++++|+++++++|.++ +|++|+++ ++++|+|||++|||+++++ +
T Consensus 231 --------------g~~lvi~~~~I~d~al~~l~~~------~I~av~~~-----~~~~Le~Ia~~tGa~ii~~-----~ 280 (472)
T cd03341 231 --------------GVNVIVAGGSVGDLALHYCNKY------GIMVIKIN-----SKFELRRLCRTVGATPLPR-----L 280 (472)
T ss_pred --------------CCeEEEECCCCCHHHHHHHHHC------CeEEEEeC-----CHHHHHHHHHHhCCEEecc-----c
Confidence 8999999999999999998654 59999977 4678999999999999999 8
Q ss_pred cccCcccCcceeEEEEee---ccEEEEecCCChhhHHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeEEEEEcCCc
Q 008181 340 DKVKEEMLGTAKKVTVSV---DDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGAS 416 (575)
Q Consensus 340 ~~~~~~~lG~~~~v~~~~---~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t 416 (575)
++++++++|+|+.|++.+ +++++|.++++ .++++||+|||+|
T Consensus 281 ~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~-----------------------------------~~~~~TI~lrG~t 325 (472)
T cd03341 281 GAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKE-----------------------------------DSKIATIVLRGAT 325 (472)
T ss_pred ccCCHhHCCCceEEEEEEECCeeEEEEEccCC-----------------------------------CCCeEEEEEECCC
Confidence 889999999999999765 78899987642 1357999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHhHHHHHHHHhcCCCHH
Q 008181 417 EVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE-NEDQRRGIHIIQNALKAPTLTIASNAGFDGS 494 (575)
Q Consensus 417 ~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~-~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~ 494 (575)
+.+++|+||+++||++++++++++| +|||||++||+++.+|++++.. ++++++++++|++||++||++|++|||+|+.
T Consensus 326 ~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~ 405 (472)
T cd03341 326 QNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDAT 405 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999999999999999999 9999999999999999998766 7899999999999999999999999999999
Q ss_pred HHHHHHHhcC---CCceeEecCCC--cccccccCcccccHHHHHHHHHHHHHHHHHHhccchhhcc
Q 008181 495 TIIGKLLEQD---DVNFGFDAAKG--EYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLV 555 (575)
Q Consensus 495 ~~l~~l~~~~---~~~~Gid~~~g--~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~ 555 (575)
+++.+|+..| +.++|+|+.+| ++.||++.|||||+.||+++|+.|+|+|++||+||++|..
T Consensus 406 ~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 471 (472)
T cd03341 406 EVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQIIMA 471 (472)
T ss_pred HHHHHHHHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 9999998765 55799999999 9999999999999999999999999999999999999864
No 34
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=7.8e-86 Score=719.44 Aligned_cols=439 Identities=38% Similarity=0.567 Sum_probs=407.5
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhccccc
Q 008181 35 DINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNKA 114 (575)
Q Consensus 35 ~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd~~ 114 (575)
...+|++++..|++||..|+++++|||||+|++|||+++.|+++|||||+||+++|+++||. ++|+++++++||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~----a~ll~~~~~~~~~~ 77 (464)
T cd00309 2 EREFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPA----AKLLVEVAKSQDDE 77 (464)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHH----HHHHHHHHHHHHhH
Confidence 45688999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred cCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhccc--CCCHHHHHHHHHHhcC------Cch
Q 008181 115 AGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQM--ISTPEEITQVATISAN------GER 186 (575)
Q Consensus 115 ~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~--v~~~~~L~~va~ts~~------~~~ 186 (575)
+||||||+++|+++||+++.+++++|+||..|++||+.|.+.+++.|++++++ +.+.+.|.++|+|+++ +++
T Consensus 78 ~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~ 157 (464)
T cd00309 78 VGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDD 157 (464)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccchH
Confidence 99999999999999999999999999999999999999999999999999998 5678899999999998 678
Q ss_pred HHHHHHHHHHHHhcc------cCe--EEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccccC
Q 008181 187 EIGELLARAMEKVGK------EGV--ITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKIS 258 (575)
Q Consensus 187 ~la~lv~ea~~~v~~------~~~--I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~l~ 258 (575)
++++++++|+..+++ .+. |.+.+|+++.|+ ++++|++|+++|.+|+| ++.++||+|+++|++|+
T Consensus 158 ~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds-~li~Gi~~~~~~~~~~m-------~~~~~n~~Ili~~~~Le 229 (464)
T cd00309 158 FLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDS-ELVVGMVFDKGYLSPYM-------PKRLENAKILLLDCKLE 229 (464)
T ss_pred HHHHHHHHHHHHhccccCccccceEEEEecCCCCcccc-eeeeeEEEecCCCCCCC-------ceeecCceEEEEecCcc
Confidence 999999999999987 344 455689999988 89999999999999874 78899999999999987
Q ss_pred CHHHHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCeEeecCCCCc
Q 008181 259 DMNSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLT 338 (575)
Q Consensus 259 ~~~~l~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~~~~ 338 (575)
. ||+++++|+++++++|.++ +|++|++ +++++|+|||++|||+++++
T Consensus 230 ~-----------------lIi~~~~I~~~al~~L~~~------~I~~v~~-----~~~~~L~~Ia~~tGa~ii~~----- 276 (464)
T cd00309 230 Y-----------------VVIAEKGIDDEALHYLAKL------GIMAVRR-----VRKEDLERIAKATGATIVSR----- 276 (464)
T ss_pred e-----------------EEecCCCcCHHHHHHHHHC------CeEEEEe-----CCHHHHHHHHHHhCCEEecc-----
Confidence 6 8888888999999999875 5899985 57889999999999999999
Q ss_pred ccccCcccCcceeEEEEee---ccEEEEecCCChhhHHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeEEEEEcCC
Q 008181 339 LDKVKEEMLGTAKKVTVSV---DDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGA 415 (575)
Q Consensus 339 ~~~~~~~~lG~~~~v~~~~---~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~ 415 (575)
+++++++.+|+|+.|++.+ +++++|.++.. ++++||+|||+
T Consensus 277 ~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~------------------------------------~~~~TIllrG~ 320 (464)
T cd00309 277 LEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKG------------------------------------GKVATILLRGA 320 (464)
T ss_pred cccCCcccCccccEEEEEEEcCeeEEEEEecCC------------------------------------CCEEEEEEeCC
Confidence 8889999999999998654 56778887542 25689999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHhHHHHHHHHhcCCCH
Q 008181 416 SEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE-NEDQRRGIHIIQNALKAPTLTIASNAGFDG 493 (575)
Q Consensus 416 t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~-~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~ 493 (575)
|+.+++|++|+++||+++++++++++ +|||||++||++++.|++++.. ++++++++++|++||+.||++|++|||+|+
T Consensus 321 t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~ 400 (464)
T cd00309 321 TEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDP 400 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 99999999999999999999999996 9999999999999999998876 789999999999999999999999999999
Q ss_pred HHHHHHHHhcCC---CceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHhccchhhc
Q 008181 494 STIIGKLLEQDD---VNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVL 554 (575)
Q Consensus 494 ~~~l~~l~~~~~---~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~ 554 (575)
.+++.+|++.|. .++|+|..+|++.||++.|||||+.+|+++|+.|+|+|++||+||++|+
T Consensus 401 ~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 401 IEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred HHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 999999998773 4689999999999999999999999999999999999999999999984
No 35
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-81 Score=615.84 Aligned_cols=463 Identities=24% Similarity=0.369 Sum_probs=419.4
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecC--CCCeEEecChHHHhccccccCccchhhhHHHHHHHhcc
Q 008181 34 KDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKS--IGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGAT 111 (575)
Q Consensus 34 ~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~--~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~q 111 (575)
.....|+.+|.+.+-+...+.|+|+|||||+||+||+... .|.+.+||||+||||++.+.+|. |++|++.|+-|
T Consensus 11 ~~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpa----AkvLv~~S~vQ 86 (527)
T KOG0363|consen 11 ATEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPA----AKVLVDISKVQ 86 (527)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCch----hhheecccccc
Confidence 4566899999999999999999999999999999999764 36799999999999999999998 99999999999
Q ss_pred ccccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCC-----HHHHHHHHHHhcCC--
Q 008181 112 NKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMIST-----PEEITQVATISANG-- 184 (575)
Q Consensus 112 d~~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~-----~~~L~~va~ts~~~-- 184 (575)
|+++|||||||++|+++||++|.+|+.+.+||+.|+.||+.|...+++.|.+.++.-.+ +++|.++|+|.+.+
T Consensus 87 D~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKi 166 (527)
T KOG0363|consen 87 DDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKI 166 (527)
T ss_pred ccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988876542 67899999997643
Q ss_pred ----chHHHHHHHHHHHHhcccC-----eEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeeccc
Q 008181 185 ----EREIGELLARAMEKVGKEG-----VITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDK 255 (575)
Q Consensus 185 ----~~~la~lv~ea~~~v~~~~-----~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~ 255 (575)
+++|++|+++|+.++...+ .|.+..||+++|| .+-+|+.+++.+-. ..|+.++||+||+-|.
T Consensus 167 Lsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dS-fLDeGFlL~K~igv--------~qpkriena~iLIANT 237 (527)
T KOG0363|consen 167 LSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDS-FLDEGFLLDKKIGV--------NQPKRIENAKILIANT 237 (527)
T ss_pred HHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccccc-cccccceeccccCC--------CCcccccccceEEecC
Confidence 6899999999999985433 3667899999998 89999999987633 3578899999999876
Q ss_pred ccC--------------C-----------HHHHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCC
Q 008181 256 KIS--------------D-----------MNSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPG 310 (575)
Q Consensus 256 ~l~--------------~-----------~~~l~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~ 310 (575)
+.+ + .+.+...++++.++|+|+.|-.+-|-++..++|... +|+++.+.+
T Consensus 238 ~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~da------gi~aIEHAD 311 (527)
T KOG0363|consen 238 PMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADA------GIMAIEHAD 311 (527)
T ss_pred CCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhc------Ccceeeccc
Confidence 532 1 124677899999999999999998888888888765 589999888
Q ss_pred CCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCcceeEEE---EeeccEEEEecCCChhhHHHHHHHHHhhhhccC
Q 008181 311 FGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVT---VSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKS 387 (575)
Q Consensus 311 ~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~v~---~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~ 387 (575)
|.. +|||+..||+.|+|+ +++++..++|+|+.++ ++++++.-|+|+.-
T Consensus 312 FdG-----iERLalvtGGeI~ST-----Fd~p~~~klG~C~~IeeimiGed~li~FSGv~~------------------- 362 (527)
T KOG0363|consen 312 FDG-----IERLALVTGGEIVST-----FDNPELVKLGECDLIEEIMIGEDKLIKFSGVKL------------------- 362 (527)
T ss_pred chh-----HHHHhhcccceeeec-----cCCcchhccccchhhHHHhcCccceeeeccccc-------------------
Confidence 864 899999999999999 9999999999999887 68999999998642
Q ss_pred cchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc-Cc
Q 008181 388 AATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE-NE 465 (575)
Q Consensus 388 ~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~-~~ 465 (575)
|.-|||++||.|++++||.+|++|||||++....++. ++.|||+.||.++..+.+++.. ++
T Consensus 363 -----------------GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pG 425 (527)
T KOG0363|consen 363 -----------------GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPG 425 (527)
T ss_pred -----------------ccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCc
Confidence 3358999999999999999999999999999999998 9999999999999999999988 89
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcC---CCceeEecCCCcccccccCcccccHHHHHHHHHHHHHH
Q 008181 466 DQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQD---DVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASV 542 (575)
Q Consensus 466 ~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~ 542 (575)
++..++.+|++||.++|.+||.|+|+|+.+++++|++.| ..++|+|+.+|++.||.+.||+|++.+|.+.+.+|.|+
T Consensus 426 kea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i~dm~~~Gi~es~~vK~~vv~sasEa 505 (527)
T KOG0363|consen 426 KEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIVESLKVKQAVVSSASEA 505 (527)
T ss_pred hhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCchhhHHHhhhHHHHHHHHHHHhhhHHH
Confidence 999999999999999999999999999999999999988 46899999999999999999999999999999999999
Q ss_pred HHHHhccchhhccCCCCCC
Q 008181 543 SLLFTTTEATVLVNSDDKN 561 (575)
Q Consensus 543 a~~iL~iD~iI~~~~~~~~ 561 (575)
+.+|||+|.||.+.|++-.
T Consensus 506 ae~ilrvD~Iik~aPR~r~ 524 (527)
T KOG0363|consen 506 AEMILRVDNIIKAAPRERE 524 (527)
T ss_pred HHHHHhhhhhhhcCCcccc
Confidence 9999999999999887643
No 36
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1.3e-79 Score=674.89 Aligned_cols=441 Identities=29% Similarity=0.492 Sum_probs=403.5
Q ss_pred HHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhccccccCCccchHHHHHHHHHHH
Q 008181 53 VAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTE 132 (575)
Q Consensus 53 l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd~~~GDGTTs~vvLa~~Ll~~ 132 (575)
|+++|++||||+|++|||++..|+++|||||+||+++|+++||+ ++|+++++++|++++||||||+|+|+++||++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~----~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~ 76 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPI----AKLLVEASKSQDEEVGDGTTSVVLLACELLRN 76 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHH----HHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccch----hhhHHHhHHHHHhhhccccceeeecccchhhh
Confidence 68999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCCH-HHHHHHHHHhcCCc------hHHHHHHHHHHHHhcc----
Q 008181 133 GCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTP-EEITQVATISANGE------REIGELLARAMEKVGK---- 201 (575)
Q Consensus 133 ~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~-~~L~~va~ts~~~~------~~la~lv~ea~~~v~~---- 201 (575)
+.+++++|+||..|++||+.+.+.+++.|+++++++++. +.|.++++|+++++ ++|++++++|+..+..
T Consensus 77 ~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~ 156 (485)
T PF00118_consen 77 ALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDL 156 (485)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHG
T ss_pred hhhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccc
Confidence 999999999999999999999999999999999999876 89999999999986 8999999999943321
Q ss_pred -cCeEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccccCCHHH------------------
Q 008181 202 -EGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNS------------------ 262 (575)
Q Consensus 202 -~~~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~l~~~~~------------------ 262 (575)
.-.+....|++.+|| ++++|++|++++.++ .|++++++|+|++++++|+....
T Consensus 157 ~~i~i~~i~g~~~~dS-~li~Giv~~~~~~~~-------~~~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 228 (485)
T PF00118_consen 157 DNIKIIKIPGGSISDS-ELINGIVLDKGFSSP-------NMPKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSK 228 (485)
T ss_dssp GGEEEEEEESSSSGGE-EEESEEEESSSBSST-------TSBSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHH
T ss_pred cchhhhhhcccccccc-ccccceeeecccccc-------ccccccccceEEeeecccccccccccccchhhHHHHHHHHh
Confidence 113567788888887 899999999999887 46788899999999998875444
Q ss_pred -----HHHHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCeEeecCCCC
Q 008181 263 -----LVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGL 337 (575)
Q Consensus 263 -----l~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~~~ 337 (575)
+.++++++.+.|++|||++++|++.++++|..++ |.+++ ++++++|++|+++||++++++
T Consensus 229 ~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~------I~~i~-----~v~~~~l~~i~~~tg~~ii~~---- 293 (485)
T PF00118_consen 229 QEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNG------ILVIR-----RVSKEDLERIARATGASIISS---- 293 (485)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCT------HEEES-----SEHHHHHHHHHHHHTSBEBSS----
T ss_pred hhhhhhccccceEeeeccceeeeecccccccchhhhhhh------hhccc-----cchHHHHHhhhcccCCcEecc----
Confidence 7889999999999999999999999999998775 66665 468899999999999999999
Q ss_pred cccccCcccCcceeEE---EEeeccEEEEec--CCChhhHHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeEEEEE
Q 008181 338 TLDKVKEEMLGTAKKV---TVSVDDTIVLHG--GGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKV 412 (575)
Q Consensus 338 ~~~~~~~~~lG~~~~v---~~~~~~~~~~~g--~~~~~~i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~i 412 (575)
+++++++++|+|+.+ ++++++++++++ +. .+..+||+|
T Consensus 294 -~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~------------------------------------~~~~~Till 336 (485)
T PF00118_consen 294 -LDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCL------------------------------------SSKICTILL 336 (485)
T ss_dssp -CGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSES------------------------------------SSSEEEEEE
T ss_pred -cccccchhhhhhhhhhhccccccccccccccccc------------------------------------ccCceEEEe
Confidence 888888889999999 466788999884 21 346799999
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHhHHHHHHHHhcC
Q 008181 413 GGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE-NEDQRRGIHIIQNALKAPTLTIASNAG 490 (575)
Q Consensus 413 rG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~-~~~~~~~i~~~a~AL~~ip~~L~~NaG 490 (575)
||+|+.+++|++++++||+++++++++++ +|||||++|++|+++|++++.. ++++++++++|++||+.||++|++|||
T Consensus 337 ~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG 416 (485)
T PF00118_consen 337 RGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAG 416 (485)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTT
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccC
Confidence 99999999999999999999999999987 9999999999999999998877 789999999999999999999999999
Q ss_pred CCHHHHHHHHHhcC--CCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHhccchhhccCC
Q 008181 491 FDGSTIIGKLLEQD--DVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNS 557 (575)
Q Consensus 491 ~d~~~~l~~l~~~~--~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~ 557 (575)
+|+.+++++|...| +.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++||++|++|..+|
T Consensus 417 ~~~~~~~~~l~~~h~~~~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 417 LDSSEVISKLKSFHNNGNNYGIDLDTGEIVDMKEAGILDPLLVKISALKSAVEIASLILRIDEIIMAKP 485 (485)
T ss_dssp STHHHHHHHHHHHHHSTTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEESS
T ss_pred CCceeeehhhHhhhccccccCcCccCCceeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999854 57999999999999999999999999999999999999999999999998865
No 37
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-80 Score=616.69 Aligned_cols=464 Identities=22% Similarity=0.331 Sum_probs=406.2
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcccc
Q 008181 34 KDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNK 113 (575)
Q Consensus 34 ~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd~ 113 (575)
++....++.|.+|+++.+.+++.++|||||+||||||.++.|+++|||||+||||+|++-||+ |+||+++|..||.
T Consensus 19 ~d~ekp~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~----akmLvelS~aQD~ 94 (534)
T KOG0358|consen 19 KDKEKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPA----AKMLVELSAAQDS 94 (534)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChH----HHHHHHhhhhccc
Confidence 555667899999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCC--CHHHHHHHHHHhcCC------c
Q 008181 114 AAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMIS--TPEEITQVATISANG------E 185 (575)
Q Consensus 114 ~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~--~~~~L~~va~ts~~~------~ 185 (575)
++||||||||+|+++||+.+.+|+++|+||..|...|+.|.+..+++|.+++.|++ +++.|.+-|+|++++ .
T Consensus 95 eaGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvSq~s 174 (534)
T KOG0358|consen 95 EAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVSQYS 174 (534)
T ss_pred cccCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999887 788899999999875 4
Q ss_pred hHHHHHHHHHHHHhcc-cC---------eEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeeccc
Q 008181 186 REIGELLARAMEKVGK-EG---------VITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDK 255 (575)
Q Consensus 186 ~~la~lv~ea~~~v~~-~~---------~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~ 255 (575)
..++.+.++|+.++.. +. .|.++.||.++|. ++++|++|+....... .|..++++||-++.+
T Consensus 175 ~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDt-e~i~glvl~~~~~~~~-------gptriekAkIglIQF 246 (534)
T KOG0358|consen 175 SLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDT-ELIKGLVLTQKASKSA-------GPTRIEKAKIGLIQF 246 (534)
T ss_pred cccchHHHHHHHhccCcccccccchhhhhhHHhhCCccchh-hhhcceEEeeecccCC-------CcchhhhceeeEEEE
Confidence 6889999999998743 11 2445689999987 9999999997654321 355666777766554
Q ss_pred ccC-------------CH-----------HHHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCC
Q 008181 256 KIS-------------DM-----------NSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGF 311 (575)
Q Consensus 256 ~l~-------------~~-----------~~l~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~ 311 (575)
.|+ ++ +.++++++++++.|+|++++|++|=.++++.|..+. -..++|++|+
T Consensus 247 ~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHf-L~klkimvik---- 321 (534)
T KOG0358|consen 247 QISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHF-LAKLKIMVIK---- 321 (534)
T ss_pred EecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHH-HHhCcEEEEc----
Confidence 332 22 235778899999999999999977444444333221 1234799998
Q ss_pred CCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCcceeEEEEe----eccEEEEecCCChhhHHHHHHHHHhhhhccC
Q 008181 312 GDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVS----VDDTIVLHGGGDKKLIEERCEEVCQTAMGKS 387 (575)
Q Consensus 312 ~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~v~~~----~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~ 387 (575)
++.++++|.+|+.+|..++++ ++.++++.||+++.++.. +.+++-+.|..+
T Consensus 322 -dieRediefick~l~c~Pia~-----id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n------------------- 376 (534)
T KOG0358|consen 322 -DIEREDIEFICKTLGCKPIAD-----IDHFTADKLGSADLVEETDSSGEGKIVKITGIQN------------------- 376 (534)
T ss_pred -cccHhhHHHHHhhcCCeecch-----hhhcChhhcCcchhhhhcccCCCccEEEEEEeec-------------------
Confidence 568899999999999999999 999999999999998743 346666666432
Q ss_pred cchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc-Cc
Q 008181 388 AATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE-NE 465 (575)
Q Consensus 388 ~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~-~~ 465 (575)
-|..++|++||++...++|.+|++|||||++|+..+.. ++||||+.||.++..|..++.. .+
T Consensus 377 ----------------~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG 440 (534)
T KOG0358|consen 377 ----------------AGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEG 440 (534)
T ss_pred ----------------CCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhcc
Confidence 25678999999999999999999999999999999987 9999999999999999999988 78
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcC---CCceeEecCCCcccccccCcccccHHHHHHHHHHHHHH
Q 008181 466 DQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQD---DVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASV 542 (575)
Q Consensus 466 ~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~---~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~ 542 (575)
.+.|++++|++|||.||.+||+|||++|..++++|+++| ..+.|++...|.+.|+++..|+.|+.|-.+++..|+|+
T Consensus 441 ~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~ee~VvQPllVs~SaitlA~Et 520 (534)
T KOG0358|consen 441 VEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILEENVVQPLLVSISAITLATET 520 (534)
T ss_pred chhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHHHhcccceeeeHHHHHHHHHH
Confidence 999999999999999999999999999999999999987 46899999999999999999999999999999999999
Q ss_pred HHHHhccchhhcc
Q 008181 543 SLLFTTTEATVLV 555 (575)
Q Consensus 543 a~~iL~iD~iI~~ 555 (575)
+.+||+||+|+..
T Consensus 521 vr~ILKIDDIv~a 533 (534)
T KOG0358|consen 521 VRSILKIDDIVNA 533 (534)
T ss_pred HHHHhhhhhhccc
Confidence 9999999999864
No 38
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-73 Score=583.73 Aligned_cols=460 Identities=21% Similarity=0.302 Sum_probs=407.8
Q ss_pred ccc-HHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcccccc
Q 008181 37 NFG-VGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNKAA 115 (575)
Q Consensus 37 ~~g-~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd~~~ 115 (575)
..| +++..+|++||++|++++||+|||+||+||++|+.|++.+|||.+||+++++++||+ |+||+++++.|+++.
T Consensus 21 ~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPa----akllv~a~~~q~~~i 96 (537)
T KOG0362|consen 21 PSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPA----AKLLVEATQMQEEEI 96 (537)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcH----HHHHHHHHHHHHHhh
Confidence 344 789999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcc----cCCCHHHHHHHHHHhc-----CCch
Q 008181 116 GDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQ----MISTPEEITQVATISA-----NGER 186 (575)
Q Consensus 116 GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~----~v~~~~~L~~va~ts~-----~~~~ 186 (575)
||||+++|+|+++||++|.+++..|++|..|++||+.|.+.+++.|.++.. +++|.+ .++++++ .+++
T Consensus 97 GDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~---~~~rs~i~skq~~~ed 173 (537)
T KOG0362|consen 97 GDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKE---WALRSVIMSKQYGNED 173 (537)
T ss_pred CCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChH---HHHHHHHHHhhcchHH
Confidence 999999999999999999999999999999999999999999999998754 344554 4444433 3378
Q ss_pred HHHHHHHHHHHHhcccC-------eEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeeccccc--
Q 008181 187 EIGELLARAMEKVGKEG-------VITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKI-- 257 (575)
Q Consensus 187 ~la~lv~ea~~~v~~~~-------~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~l-- 257 (575)
++++++++|+..+.+.+ .+++..|+++++| +++.|++|++... +.+.+-+..+|.++.|++
T Consensus 174 ~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S-~Vv~GmVfkr~~e---------G~v~~ak~arvAvf~cP~d~ 243 (537)
T KOG0362|consen 174 FLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLEDS-CVVCGMVFKRDPE---------GEVKSAKDARVAVFACPFDI 243 (537)
T ss_pred HHHHHHHHHHHhhcccccccccceEEEEEecCCcccc-eeeEEEEeccccC---------CcccccccceeEEEecCCCc
Confidence 99999999999998752 3678899999998 8999999998742 233455678888888873
Q ss_pred -----------CCHHHH-----------HHHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcc
Q 008181 258 -----------SDMNSL-----------VGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNR 315 (575)
Q Consensus 258 -----------~~~~~l-----------~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~ 315 (575)
++++++ ...++.+...|+++|++.+.+++.+|+++ |++ +|+++|.+ +
T Consensus 244 ~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhfl--nky----~ImVlqi~-----S 312 (537)
T KOG0362|consen 244 AQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFL--NKY----KIMVLQIN-----S 312 (537)
T ss_pred ccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhh--ccc----cEEEEEec-----c
Confidence 455544 34577788899999999999999999988 776 59999976 6
Q ss_pred hhHHHHHHHHhCCeEeecCCCCcccccCcccCcceeEEEE---eeccEEEEecCCChhhHHHHHHHHHhhhhccCcchhh
Q 008181 316 RANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTV---SVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFD 392 (575)
Q Consensus 316 ~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~v~~---~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~~~ 392 (575)
+.+|.|||+..||.++++ +..+.+..+|+|++|.. +++.++.|.....
T Consensus 313 k~eLrrlcrtvGA~~l~r-----l~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~------------------------ 363 (537)
T KOG0362|consen 313 KFDLRRLCRTVGATALPR-----LFPPAPEELGYCDSVSTQEIGDTLVVVFRWEST------------------------ 363 (537)
T ss_pred HhhHHHHHHHcCCccchh-----ccCCCCccccccceeeeeecCCceEEEEeeccC------------------------
Confidence 789999999999999999 88899999999999974 4556666663110
Q ss_pred HHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc-CchhHHH
Q 008181 393 REKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE-NEDQRRG 470 (575)
Q Consensus 393 ~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~-~~~~~~~ 470 (575)
.++++||++||+++..+|+.||+++|++++.+...+++ ++||+|++|++|+..|.++... ++..|++
T Consensus 364 -----------~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~A 432 (537)
T KOG0362|consen 364 -----------GTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLA 432 (537)
T ss_pred -----------CCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhH
Confidence 13578999999999999999999999999999999998 9999999999999999999887 8999999
Q ss_pred HHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcCC--CceeEecCCC-cccccccCcccccHHHHHHHHHHHHHHHHHHh
Q 008181 471 IHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDD--VNFGFDAAKG-EYVDMVKAGIIDPLKVVRTALADAASVSLLFT 547 (575)
Q Consensus 471 i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~~--~~~Gid~~~g-~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL 547 (575)
++.|++||+.+|++|++|+|++..+++++|+..|. .+.|+|+..+ ...|+.++||||-+..|.++++.|+++|+++|
T Consensus 433 ik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~g~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl 512 (537)
T KOG0362|consen 433 IKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQGGKNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVL 512 (537)
T ss_pred HHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcCCCcceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheee
Confidence 99999999999999999999999999999998874 5789998876 58999999999999999999999999999999
Q ss_pred ccchhhccCCCCCCCCC
Q 008181 548 TTEATVLVNSDDKNKPP 564 (575)
Q Consensus 548 ~iD~iI~~~~~~~~~~~ 564 (575)
++|+||++++.-.|.||
T Consensus 513 ~vDqiimak~aggp~~~ 529 (537)
T KOG0362|consen 513 TVDQIIMAKKAGGPKPP 529 (537)
T ss_pred ehhheeEecccCCCCCC
Confidence 99999999999888886
No 39
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-74 Score=584.18 Aligned_cols=469 Identities=20% Similarity=0.301 Sum_probs=418.3
Q ss_pred hhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhccccc
Q 008181 35 DINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNKA 114 (575)
Q Consensus 35 ~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd~~ 114 (575)
+...|+.+|.+|.-|+..++++++|||||-|+|||++++.|++.+||||+|||+.+.++||+ +|+|++.++.||++
T Consensus 13 e~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa----~KiLvelaq~qd~e 88 (545)
T KOG0360|consen 13 ERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPA----AKVLVELAQLQDEE 88 (545)
T ss_pred CcccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchH----HHHHHHHHHhcccc
Confidence 45789999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHh-hcccCC--CHHHHHHHHHHhcCC------c
Q 008181 115 AGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKS-RAQMIS--TPEEITQVATISANG------E 185 (575)
Q Consensus 115 ~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~-~s~~v~--~~~~L~~va~ts~~~------~ 185 (575)
+|||||+||+++++||+++.+|+..++||..|+.||+.|+..+++++++ .+.|++ ..+.|.++++|++.+ .
T Consensus 89 vgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds 168 (545)
T KOG0360|consen 89 VGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDS 168 (545)
T ss_pred ccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccch
Confidence 9999999999999999999999999999999999999999999999976 477776 577899999998764 4
Q ss_pred hHHHHHHHHHHHHhcc---cC---------eEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeec
Q 008181 186 REIGELLARAMEKVGK---EG---------VITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIY 253 (575)
Q Consensus 186 ~~la~lv~ea~~~v~~---~~---------~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~ 253 (575)
++|++++++|+..+.- +| +|.+-+|.+..+| .+++|+.+.....+.. |+..+.|+||+++
T Consensus 169 ~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS-~l~~GyaLnc~~asq~-------m~~~i~~~Kiacl 240 (545)
T KOG0360|consen 169 DFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIES-MLLPGYALNCSVASQM-------MPLRIKNAKIACL 240 (545)
T ss_pred HHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhh-eeecceeeeccHhhhc-------cccccccceeeeE
Confidence 7999999999987632 22 2556689998888 7999999998776643 6788889999999
Q ss_pred ccccC-------------CHHHH-----------HHHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecC
Q 008181 254 DKKIS-------------DMNSL-----------VGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAP 309 (575)
Q Consensus 254 d~~l~-------------~~~~l-----------~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~ 309 (575)
|+.|+ +++++ ++.++++...|+|+|+++++|||..+.+|++.. +++||
T Consensus 241 d~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veag------amAVr-- 312 (545)
T KOG0360|consen 241 DFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAG------AMAVR-- 312 (545)
T ss_pred ecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcc------hhhhH--
Confidence 98653 44432 345778999999999999999999999999874 77876
Q ss_pred CCCCcchhHHHHHHHHhCCeEeecCCCCcc-cccCcccCcceeEEE---EeeccEEEEecCCChhhHHHHHHHHHhhhhc
Q 008181 310 GFGDNRRANLDDLAILTGGEIISEDRGLTL-DKVKEEMLGTAKKVT---VSVDDTIVLHGGGDKKLIEERCEEVCQTAMG 385 (575)
Q Consensus 310 ~~~~~~~~~le~la~~tGa~iis~~~~~~~-~~~~~~~lG~~~~v~---~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~ 385 (575)
+..+++|++|+++||++++++..++.= +.+.+..+|+|+.|. +.+++++++.+...
T Consensus 313 ---R~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka----------------- 372 (545)
T KOG0360|consen 313 ---RCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKA----------------- 372 (545)
T ss_pred ---HHHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCcc-----------------
Confidence 568899999999999999999333221 235677899999885 57888999987431
Q ss_pred cCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc-
Q 008181 386 KSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE- 463 (575)
Q Consensus 386 ~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~- 463 (575)
..++|++||+|.+.+||++|++|||+|++|..++++ +|||||++|.+++-+|++|+.+
T Consensus 373 --------------------~~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~ 432 (545)
T KOG0360|consen 373 --------------------TSASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSV 432 (545)
T ss_pred --------------------ceeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccC
Confidence 247899999999999999999999999999999999 9999999999999999999988
Q ss_pred CchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcC-----------CCceeEecCCCcccccccCcccccHHHH
Q 008181 464 NEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQD-----------DVNFGFDAAKGEYVDMVKAGIIDPLKVV 532 (575)
Q Consensus 464 ~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~-----------~~~~Gid~~~g~i~d~~~~gI~dp~~vk 532 (575)
..++++++..|+.||.+||++|+.|++.|+.+++++++..| ..++|.|+.+|++.|.++.|++||..+|
T Consensus 433 ~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ng~~~dn~~~g~~ep~~~k 512 (545)
T KOG0360|consen 433 GSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAGSFEPPIVK 512 (545)
T ss_pred ccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchhhCccccccEeecceeeeeeccceee
Confidence 68999999999999999999999999999999999999876 2479999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccchhhccCCCCCCCC
Q 008181 533 RTALADAASVSLLFTTTEATVLVNSDDKNKP 563 (575)
Q Consensus 533 ~~~l~~A~e~a~~iL~iD~iI~~~~~~~~~~ 563 (575)
...|+.|+|.+..+||+|++|.-.|..+...
T Consensus 513 vksLk~ateaaitiLriD~li~l~~~~~~~~ 543 (545)
T KOG0360|consen 513 VKSLKFATEAAITILRIDDLIKLLPELQVAV 543 (545)
T ss_pred hhhhHHHHHhhhhhcchhhhhhcCccccccC
Confidence 9999999999999999999998877776655
No 40
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-73 Score=570.24 Aligned_cols=472 Identities=20% Similarity=0.282 Sum_probs=429.0
Q ss_pred CcccccccccchhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhH
Q 008181 23 GRVLCNRNYVAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGAN 102 (575)
Q Consensus 23 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ 102 (575)
++|++..++ .+....|..++..|+++.+.++|+++|+|||+.|.||+.++.|.+..||||..|+++|++.||. |+
T Consensus 2 ~apv~~~~~-~~~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpa----ak 76 (527)
T KOG0364|consen 2 QAPVLVLSK-NTKRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPA----AK 76 (527)
T ss_pred CCceeeccc-ccCcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcc----hh
Confidence 689999888 6778889999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHhccccccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCC--CHHHHHHHHHH
Q 008181 103 LVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMIS--TPEEITQVATI 180 (575)
Q Consensus 103 ll~~~s~~qd~~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~--~~~~L~~va~t 180 (575)
-+.+++.+||+++|||||||++|++|+|.++..++++++||..|++.|.+|++.++..++++++|++ +...+..+..+
T Consensus 77 smiel~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~ 156 (527)
T KOG0364|consen 77 SMIELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINS 156 (527)
T ss_pred hHhhhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999998888776 56678888877
Q ss_pred hcC------CchHHHHHHHHHHHHhccc-C---------eEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCcee
Q 008181 181 SAN------GEREIGELLARAMEKVGKE-G---------VITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCE 244 (575)
Q Consensus 181 s~~------~~~~la~lv~ea~~~v~~~-~---------~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~ 244 (575)
+.. +.+..+++..+|+.+++.+ | .+.+++|+.+++| ++++|+.+.+...||. |+..
T Consensus 157 ~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s-~vl~Gv~~nkdv~Hpk-------mrr~ 228 (527)
T KOG0364|consen 157 SVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDS-CVLKGVMINKDVTHPK-------MRRA 228 (527)
T ss_pred hhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCccccccc-ceecceeeccccCcHH-------HHHH
Confidence 653 3567888999999999765 2 2467899999998 9999999999999984 6778
Q ss_pred ccCceeeecccccCC------------------------HHHHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccC
Q 008181 245 LENPLILIYDKKISD------------------------MNSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAG 300 (575)
Q Consensus 245 l~~~kIll~d~~l~~------------------------~~~l~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~ 300 (575)
++||+|+++|++|+. -+++..+++.+....++||++.++++|.+.++|.+++
T Consensus 229 IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~---- 304 (527)
T KOG0364|consen 229 IENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKAN---- 304 (527)
T ss_pred hhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcC----
Confidence 899999999998751 1245667788888999999999999999999999885
Q ss_pred ceEEEEecCCCCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCcc-eeEEEE---eeccEEEEecCCChhhHHHHH
Q 008181 301 VKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGT-AKKVTV---SVDDTIVLHGGGDKKLIEERC 376 (575)
Q Consensus 301 ~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~-~~~v~~---~~~~~~~~~g~~~~~~i~~~~ 376 (575)
|.++| +.++.+-.|++++||++++++ ++++.+.+.|+ ||.+++ +++.|+||..|.+|++
T Consensus 305 --iT~~r-----r~rKtDn~ria~acga~iv~r-----pedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pka----- 367 (527)
T KOG0364|consen 305 --ITAIR-----RLRKTDNNRIARACGARIVNR-----PEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKA----- 367 (527)
T ss_pred --chhhh-----hhhccccchhhhhcCceeccC-----hhhCchhccCcccceeeeeccCchhhhhhhhcCCCcc-----
Confidence 55554 678899999999999999999 99999999996 778875 5688999999988753
Q ss_pred HHHHhhhhccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHH
Q 008181 377 EEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATK 455 (575)
Q Consensus 377 ~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~ 455 (575)
|||++|||++.+++|.+|.++||+.+.|+.+-++ ++|||||+||.+++
T Consensus 368 -------------------------------Ctillrg~skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~ 416 (527)
T KOG0364|consen 368 -------------------------------CTILLRGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSH 416 (527)
T ss_pred -------------------------------eEEEeccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHH
Confidence 8999999999999999999999999999999999 99999999999999
Q ss_pred HHHhhhcc-CchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcCC---CceeEecCCCcccccccCcccccHHH
Q 008181 456 ALENLKTE-NEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDD---VNFGFDAAKGEYVDMVKAGIIDPLKV 531 (575)
Q Consensus 456 ~L~~~~~~-~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~~---~~~Gid~~~g~i~d~~~~gI~dp~~v 531 (575)
.|..-+.. ++.++.-+++++.||+.+||+|++|+|.++...++.+++.|. ..+|+|..+|.++||.+.++|||..+
T Consensus 417 ~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg~iVDm~~~~iwep~~v 496 (527)
T KOG0364|consen 417 ELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETGVIVDMVELGIWEPEAV 496 (527)
T ss_pred HHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCceeeEeeeeeccccchhhh
Confidence 99876555 788999999999999999999999999999999999998873 56899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccchhhccCCCC
Q 008181 532 VRTALADAASVSLLFTTTEATVLVNSDD 559 (575)
Q Consensus 532 k~~~l~~A~e~a~~iL~iD~iI~~~~~~ 559 (575)
|.+..++|++.++++||+|+|++...+.
T Consensus 497 K~Q~~ktavesa~~LLRIddIvsg~kk~ 524 (527)
T KOG0364|consen 497 KLQTGKTAVESACLLLRIDDIVSGKKKR 524 (527)
T ss_pred hhhhhhHHHHHHHHHHhhhceeeeeeec
Confidence 9999999999999999999999886654
No 41
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-68 Score=534.73 Aligned_cols=455 Identities=20% Similarity=0.330 Sum_probs=400.4
Q ss_pred hcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcccccc
Q 008181 36 INFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNKAA 115 (575)
Q Consensus 36 ~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd~~~ 115 (575)
......+...|+.+...+.+++++.+||+|..||++++.|++.+|+||.+.+++|+++||. +-++..++.+||+..
T Consensus 12 v~~~~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPT----a~lIakaatAqdd~t 87 (520)
T KOG0359|consen 12 VAQHQAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPT----ASLIAKVATAQDDIT 87 (520)
T ss_pred HHhhhcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCch----HHHHHHHHHHhhccc
Confidence 3344566777889999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCC------chHHH
Q 008181 116 GDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANG------EREIG 189 (575)
Q Consensus 116 GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~------~~~la 189 (575)
||||||+|+|++||+++|..++.+|+||..|++||+.|.+.++++|++.+.+++ ++.|..|++|++++ .+.++
T Consensus 88 GDGttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~-~~~L~~va~tsl~Tkv~~~la~~lt 166 (520)
T KOG0359|consen 88 GDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVD-RETLKDVARTSLRTKVHAELADVLT 166 (520)
T ss_pred CCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchh-HHHHHHHHHHhhcCcccHHHHhHhH
Confidence 999999999999999999999999999999999999999999999997777774 88999999999987 25677
Q ss_pred HHHHHHHHHhcc-cCe-------EEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccccC---
Q 008181 190 ELLARAMEKVGK-EGV-------ITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKIS--- 258 (575)
Q Consensus 190 ~lv~ea~~~v~~-~~~-------I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~l~--- 258 (575)
+++++++..+.. +.. |...+..+..|. .+++|+++|||..||. ||+.++|++||++|.+|+
T Consensus 167 ~~vv~aVl~i~~~~~~idl~mveim~mq~~s~~dT-~~v~glvLdhg~rHpd-------mp~~~e~a~iL~~NvSLEYEK 238 (520)
T KOG0359|consen 167 PIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDT-SLVQGLVLDHGARHPD-------MPRRVEDAYILICNVSLEYEK 238 (520)
T ss_pred HHHHhhheeeccCCCCcchhHHHhhhhccCchhhh-HHhhhhhccCCCCCcc-------cccchhceEEEEeeccccccc
Confidence 788888877762 221 222233444554 7999999999999985 788999999999999875
Q ss_pred ----------CHHH-----------HHHHHHHHHHhC---CCE-EEEecCchHHHHHHHHHhhcccCceEEEEecCCCCC
Q 008181 259 ----------DMNS-----------LVGLLELAVEKN---RAL-LIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGD 313 (575)
Q Consensus 259 ----------~~~~-----------l~~~le~i~~~~---~~l-vI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~ 313 (575)
+++| +.+.+.++.+.+ +.+ ||.+++||+..++.|.++ +|+++| +
T Consensus 239 ~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~------gIlaLR-----R 307 (520)
T KOG0359|consen 239 PEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKS------GILALR-----R 307 (520)
T ss_pred cccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhc------chHHHH-----H
Confidence 1221 223344555544 334 466789999999999876 478876 4
Q ss_pred cchhHHHHHHHHhCCeEeecCCCCcccccCcccCcceeEEE---EeeccEEEEecCCChhhHHHHHHHHHhhhhccCcch
Q 008181 314 NRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVT---VSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAAT 390 (575)
Q Consensus 314 ~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~v~---~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~ 390 (575)
.++.+||||..+|||..+.+ ++|+++++||+||.|+ +++++|+|+++|.+|.
T Consensus 308 AKRRNmERL~lacGG~a~ns-----vddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p~-------------------- 362 (520)
T KOG0359|consen 308 AKRRNMERLVLACGGEAVNS-----VDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPS-------------------- 362 (520)
T ss_pred HhhhhHHHHHHhhccceecc-----cccCChhhccccceeEEeeccceeeEeeecCCCCc--------------------
Confidence 58889999999999999999 9999999999999998 4789999999998873
Q ss_pred hhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc-CchhH
Q 008181 391 FDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE-NEDQR 468 (575)
Q Consensus 391 ~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~-~~~~~ 468 (575)
.|||+|+|||++.+.+++++++|++++++++++++ ++||+|++|..++++|+...++ +++.+
T Consensus 363 ----------------S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~ 426 (520)
T KOG0359|consen 363 ----------------SVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGRAY 426 (520)
T ss_pred ----------------ceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHHhhhccCchhh
Confidence 38999999999999999999999999999999998 9999999999999999976666 78999
Q ss_pred HHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcCC-CceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHh
Q 008181 469 RGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDD-VNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFT 547 (575)
Q Consensus 469 ~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~~-~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL 547 (575)
+++++|++||..+|++|++|+|+|+.+.+.+|..+|. ...|+|+.+|+..+....||||.+.||.+.|.+++-+|+.||
T Consensus 427 ~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~~~g~dl~~g~~~~~~~~gi~Dny~v~~~~l~s~~via~nlL 506 (520)
T KOG0359|consen 427 LGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLRGLDLFRGEECDPSRKGIYDNYSVKKQLLRSEAVIATNLL 506 (520)
T ss_pred hhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhhhcccccccCCccchhhccccchHHHHHHHhhhhHHHHHHHH
Confidence 9999999999999999999999999999999988773 347999999999999999999999999999999999999999
Q ss_pred ccchhhcc
Q 008181 548 TTEATVLV 555 (575)
Q Consensus 548 ~iD~iI~~ 555 (575)
-+|+|+.+
T Consensus 507 lvDEi~rA 514 (520)
T KOG0359|consen 507 LVDEIIRA 514 (520)
T ss_pred HHHHHHHc
Confidence 99999976
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-65 Score=502.17 Aligned_cols=380 Identities=22% Similarity=0.333 Sum_probs=352.3
Q ss_pred cccCccccc-ccccchhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccch
Q 008181 20 GVYGRVLCN-RNYVAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKD 98 (575)
Q Consensus 20 ~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~ 98 (575)
-+||+|+++ +.+..+...+|-++.++++-+..+++++++|||||+|++|++..+.|++.+|||| .|++
T Consensus 6 ~~~~~~~iiLrDQd~~~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~I-- 74 (400)
T KOG0357|consen 6 DEFGRPFIILRDQERKDRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQI-- 74 (400)
T ss_pred HhhcCceEEeeeccCCchhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHH--
Confidence 479999999 8888889999999999999999999999999999999999999999999999999 6788
Q ss_pred hhhHHHHHHHhccccccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHH
Q 008181 99 VGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVA 178 (575)
Q Consensus 99 ~ga~ll~~~s~~qd~~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~L~~va 178 (575)
++++...++.|+.++|||||.+++|++.+++++.+++..|+||..|.+||+.+.+.+++.|++.+.+++
T Consensus 75 --akLmv~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e--------- 143 (400)
T KOG0357|consen 75 --AKLIVILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE--------- 143 (400)
T ss_pred --HHHHHHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc---------
Confidence 999999999999999999999999999999999999999999999999999999999999998887765
Q ss_pred HHhcCCchHHHHHHHHHHHHhcccCeEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccccC
Q 008181 179 TISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKIS 258 (575)
Q Consensus 179 ~ts~~~~~~la~lv~ea~~~v~~~~~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~l~ 258 (575)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCeEeecCCCCc
Q 008181 259 DMNSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLT 338 (575)
Q Consensus 259 ~~~~l~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~~~~ 338 (575)
+.++++.++++|.+|+||+|+|||+|.++|..|++. ||||.+.. ++|-||++|||+|+++
T Consensus 144 ----f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lp------avrwVGGp-----EiEliAiaT~grIVpr----- 203 (400)
T KOG0357|consen 144 ----FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLP------AVRWVGGP-----EIELIAIATGGRIVPR----- 203 (400)
T ss_pred ----HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCC------ceeecCCc-----ceEEEEeecCCeeecc-----
Confidence 234578889999999999999999999999998754 67775533 6899999999999999
Q ss_pred ccccCcccCcceeEEEE-----eeccEEEEecCCChhhHHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeEEEEEc
Q 008181 339 LDKVKEEMLGTAKKVTV-----SVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVG 413 (575)
Q Consensus 339 ~~~~~~~~lG~~~~v~~-----~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~ir 413 (575)
+++++++.||+++.|+. ++|+...++.|++. +.+||.||
T Consensus 204 F~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~ns------------------------------------kaVTifvR 247 (400)
T KOG0357|consen 204 FSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNS------------------------------------KAVTIFVR 247 (400)
T ss_pred HhhhCHhhccccceEEEEecccccceEEEEEecCCC------------------------------------ceEEEEEe
Confidence 99999999999999984 36788999988764 23899999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHhHHHHHHHHhcCC
Q 008181 414 GASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLKTE-NEDQRRGIHIIQNALKAPTLTIASNAGF 491 (575)
Q Consensus 414 G~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~~~-~~~~~~~i~~~a~AL~~ip~~L~~NaG~ 491 (575)
|+|+.+++|.+|++|||||++||.+++. +|+|||++|+.|+-++.+.++. ++.+||++++|++||++||-.|++|||+
T Consensus 248 g~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl 327 (400)
T KOG0357|consen 248 GGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGL 327 (400)
T ss_pred cCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCC
Confidence 9999999999999999999999999998 9999999999999999998887 8999999999999999999999999999
Q ss_pred CHHHHHHHHHhcC----CCceeEecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHhccchhhccCC
Q 008181 492 DGSTIIGKLLEQD----DVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNS 557 (575)
Q Consensus 492 d~~~~l~~l~~~~----~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~ 557 (575)
+|.+.++++.+.+ ++++|+|+.-..-.||.+.+|+|++..|++.+..|++++.|||+||+|+..-.
T Consensus 328 ~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~~ 397 (400)
T KOG0357|consen 328 DPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKPGE 397 (400)
T ss_pred CchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecCCC
Confidence 9999999998753 68899999888889999999999999999999999999999999999987543
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.95 E-value=4.9e-27 Score=230.07 Aligned_cols=192 Identities=35% Similarity=0.513 Sum_probs=168.9
Q ss_pred HHHHHHHHHhcC-----CchHHHHHHHHHHHHhccc------Ce--EEEecCCcccceEEEEeceEEeecccCCCCccCc
Q 008181 172 EEITQVATISAN-----GEREIGELLARAMEKVGKE------GV--ITVVDGNTMVNELEVVGGMKLARGYISPYFVTDP 238 (575)
Q Consensus 172 ~~L~~va~ts~~-----~~~~la~lv~ea~~~v~~~------~~--I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~ 238 (575)
+.|.++|+|+++ +++.+++++++|+..++++ +. |.+.+|++..|+ ++++|++|++++.+|+
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds-~li~Gv~~~~~~~~~~----- 75 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDS-ELVVGVVFDKGYASPY----- 75 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhc-eeEeeEEEeccccCCC-----
Confidence 468899999998 6889999999999999872 22 567789999988 9999999999999986
Q ss_pred CCCceeccCceeeecccccCCHHHHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhH
Q 008181 239 KTQKCELENPLILIYDKKISDMNSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRAN 318 (575)
Q Consensus 239 ~~~~~~l~~~kIll~d~~l~~~~~l~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~ 318 (575)
|+++++||+|++++++|+. ||+++++|++.++++|.++ +|++|++ +++++
T Consensus 76 --m~~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~~------~I~~v~~-----~~~~~ 125 (209)
T cd03333 76 --MPKRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAKA------GIMAVRR-----VKKED 125 (209)
T ss_pred --CCeEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHHC------CCEEEEe-----CCHHH
Confidence 5789999999999999876 8898999999999999875 4889885 57899
Q ss_pred HHHHHHHhCCeEeecCCCCcccccCcccCcceeEEEEee---ccEEEEecCCChhhHHHHHHHHHhhhhccCcchhhHHH
Q 008181 319 LDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSV---DDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREK 395 (575)
Q Consensus 319 le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~v~~~~---~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~~~~~~ 395 (575)
|+|||++|||+++++ +++++++.||+|+.|++.+ +.++++.++..
T Consensus 126 l~~ia~~tga~ii~~-----~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~--------------------------- 173 (209)
T cd03333 126 LERIARATGATIVSS-----LEDLTPEDLGTAELVEETKIGEEKLTFIEGCKG--------------------------- 173 (209)
T ss_pred HHHHHHHHCCEEecc-----cccCChhhceeeeEEEEEEECCeEEEEEEcCCC---------------------------
Confidence 999999999999999 8889999999999999754 45788887643
Q ss_pred HHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHh
Q 008181 396 AQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEE 440 (575)
Q Consensus 396 l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~ 440 (575)
+..+||+|||+|+++++|.||+++||++++++++++
T Consensus 174 ---------~~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 174 ---------GKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred ---------CCEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 246899999999999999999999999999999874
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.94 E-value=4.1e-26 Score=230.25 Aligned_cols=197 Identities=20% Similarity=0.240 Sum_probs=167.1
Q ss_pred chHHHHHHHHHHHHhccc------------CeEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeee
Q 008181 185 EREIGELLARAMEKVGKE------------GVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILI 252 (575)
Q Consensus 185 ~~~la~lv~ea~~~v~~~------------~~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll 252 (575)
.++|++++++|+..+.++ -.|.+.+|+++.|| ++++|++|++.+.++ .|+++++||+|++
T Consensus 20 ~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS-~li~Gvvi~k~~~~~-------~m~~~i~n~kIll 91 (261)
T cd03334 20 LDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDS-EVVDGVVFTKNVAHK-------RMPSKIKNPRILL 91 (261)
T ss_pred HHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHc-EEEeeEEEeCCCCCc-------cCCcccCCCcEEE
Confidence 478999999999988532 12567799999997 999999999998775 4788999999999
Q ss_pred cccccCC------H-----------HHHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcc
Q 008181 253 YDKKISD------M-----------NSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNR 315 (575)
Q Consensus 253 ~d~~l~~------~-----------~~l~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~ 315 (575)
++++|+. + +.+..+++++.+.|++||+++++|++.++++|.++ +|+++++ ++
T Consensus 92 l~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~------gI~~v~~-----v~ 160 (261)
T cd03334 92 LQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEA------GITLVLN-----VK 160 (261)
T ss_pred EeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHC------CCEEEEe-----cC
Confidence 9998752 1 12456788999999999999999999999999876 4888885 47
Q ss_pred hhHHHHHHHHhCCeEeecCCCCccc-ccCcccCcceeEEEEee--------ccEEEEecCCChhhHHHHHHHHHhhhhcc
Q 008181 316 RANLDDLAILTGGEIISEDRGLTLD-KVKEEMLGTAKKVTVSV--------DDTIVLHGGGDKKLIEERCEEVCQTAMGK 386 (575)
Q Consensus 316 ~~~le~la~~tGa~iis~~~~~~~~-~~~~~~lG~~~~v~~~~--------~~~~~~~g~~~~~~i~~~~~~l~~~~l~~ 386 (575)
+++|+|||++|||+++++ +. +++++.+|+|+.|++.+ +++++|++|+.+
T Consensus 161 ~~dl~rIa~~tGa~ii~~-----i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~----------------- 218 (261)
T cd03334 161 PSVLERISRCTGADIISS-----MDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKE----------------- 218 (261)
T ss_pred HHHHHHHHHHhCCEEecC-----hhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCC-----------------
Confidence 889999999999999998 54 67888999999998643 478999987543
Q ss_pred CcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC
Q 008181 387 SAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG 441 (575)
Q Consensus 387 ~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g 441 (575)
..+||+|||+|++.++|.||+++||+++++++..++
T Consensus 219 -------------------~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 219 -------------------LGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred -------------------ceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 358999999999999999999999999999998775
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.29 E-value=2.7e-11 Score=140.10 Aligned_cols=206 Identities=20% Similarity=0.279 Sum_probs=162.0
Q ss_pred chHHHHHHHHHHHHhcccC------------eEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeee
Q 008181 185 EREIGELLARAMEKVGKEG------------VITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILI 252 (575)
Q Consensus 185 ~~~la~lv~ea~~~v~~~~------------~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll 252 (575)
.+.+..++++|...+.++- .++++.||+..|| +++.|+++.+..++ +.|..++++|+|++
T Consensus 334 ~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS-~vi~Gvv~sKn~~~-------k~M~~~~e~prill 405 (1598)
T KOG0230|consen 334 LDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDS-EVIKGVVCSKNVAH-------KRMATKYENPRILL 405 (1598)
T ss_pred HHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccc-eeeeEEEeecchhh-------hhhhhhccCCceEE
Confidence 4577889999999887641 2667889998888 99999999998776 45788899999999
Q ss_pred cccccC---------CHH--------HHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcc
Q 008181 253 YDKKIS---------DMN--------SLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNR 315 (575)
Q Consensus 253 ~d~~l~---------~~~--------~l~~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~ 315 (575)
+.+.|+ +++ .+...+..+...+.+++++.++|++.|+++|.... |..|= +++
T Consensus 406 l~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~------I~lvl-----nvK 474 (1598)
T KOG0230|consen 406 LGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKG------ISLVL-----NVK 474 (1598)
T ss_pred EecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccC------eEEEE-----ecc
Confidence 877543 333 24456677778889999999999999999986543 33321 568
Q ss_pred hhHHHHHHHHhCCeEeecCCCCcccccCcccCcceeEEEEee--------ccEEEEecCCChhhHHHHHHHHHhhhhccC
Q 008181 316 RANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSV--------DDTIVLHGGGDKKLIEERCEEVCQTAMGKS 387 (575)
Q Consensus 316 ~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~v~~~~--------~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~ 387 (575)
+..|+||++.|||.|+++ ++.++...+|+|..+++.+ ..++||+||+.+.
T Consensus 475 ~s~leRIsR~tga~I~~s-----iDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~l----------------- 532 (1598)
T KOG0230|consen 475 RSLLERISRCTGADIVPS-----VDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPL----------------- 532 (1598)
T ss_pred HHHHHHHHHHhcCceecc-----hhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCC-----------------
Confidence 899999999999999999 8889999999999998642 2445677765431
Q ss_pred cchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHH-HhCcccCccHHH
Q 008181 388 AATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAV-EEGIVPGGGVAL 450 (575)
Q Consensus 388 ~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al-~~gvvpGGGa~E 450 (575)
| |||++||.+..++.++++-++-++.++.+.. +.-|+.--|+..
T Consensus 533 -----------------G--~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi 577 (1598)
T KOG0230|consen 533 -----------------G--CTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASI 577 (1598)
T ss_pred -----------------C--ceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCcc
Confidence 2 7999999999999999999999998888654 444776666654
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00052 Score=76.09 Aligned_cols=120 Identities=38% Similarity=0.524 Sum_probs=96.7
Q ss_pred HHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCeEeecCCCCcccccCccc
Q 008181 267 LELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEM 346 (575)
Q Consensus 267 le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~ 346 (575)
++...+.+.+++++.+++..+++..++.|.+++..++++|+.|+|++.+++.|++++++|+.++.+++.+ .....
T Consensus 237 ~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~-----~~l~~ 311 (524)
T COG0459 237 LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLG-----ERLAK 311 (524)
T ss_pred ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhH-----HHHHH
Confidence 4445566678999999999899999999999999999999999999999999999999999999988643 15567
Q ss_pred CcceeEEEEeeccEEEEecCCChhhHHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeEE
Q 008181 347 LGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAV 409 (575)
Q Consensus 347 lG~~~~v~~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~t 409 (575)
+|.|..|...++.+....|.+. + ..-+++....++...++++...
T Consensus 312 ~~ga~~v~~~~d~t~~~~G~~~-------~-----------~~ve~~~~~~~~~~~~~~~~~~ 356 (524)
T COG0459 312 LGGAKIVSVLKDLTTIVLGEGA-------A-----------GLVEETKTGDYDMEKLQERKAK 356 (524)
T ss_pred ccCceEEeecccCceeecCccc-------c-----------ceEEEeeccchhhhhhhhhhhc
Confidence 8999999987776766665220 1 1124666888888899998876
No 47
>smart00574 POX domain associated with HOX domains.
Probab=48.22 E-value=83 Score=28.66 Aligned_cols=60 Identities=23% Similarity=0.263 Sum_probs=42.6
Q ss_pred chhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhh
Q 008181 389 ATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLK 461 (575)
Q Consensus 389 ~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~ 461 (575)
+..+|..++.+.++|- ..++|++++++-...-++..+..- .|+|.|++-.+.+.+|+..+
T Consensus 68 s~~~r~e~q~kk~kLl-------------~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~S 128 (140)
T smart00574 68 STAERQELQRKKAKLL-------------SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTIS 128 (140)
T ss_pred chhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 3446666777766653 457888888877777777776664 78999998888877776543
No 48
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=47.61 E-value=1.1 Score=50.14 Aligned_cols=60 Identities=33% Similarity=0.420 Sum_probs=48.3
Q ss_pred CCCEEEEecCchH-----HHHHHHHHhhccc----CceEEEEecCCCCCcchhHHHHHHHHhCCeEeecC
Q 008181 274 NRALLIVAEDVER-----DALAMLILNKHHA----GVKVCAIKAPGFGDNRRANLDDLAILTGGEIISED 334 (575)
Q Consensus 274 ~~~lvI~~~~i~~-----~al~~l~~n~~~~----~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~ 334 (575)
..++.+..+++++ +++..++.++.++ ..++++++.+ +++...+.|++...+++.++...+
T Consensus 247 ~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~d 315 (522)
T TIGR02345 247 KDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDED 315 (522)
T ss_pred ccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHHH
Confidence 3467788888888 7777777777766 3488999987 999999999999999998876654
No 49
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=38.17 E-value=1.4e+02 Score=24.76 Aligned_cols=55 Identities=22% Similarity=0.221 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCe
Q 008181 265 GLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGE 329 (575)
Q Consensus 265 ~~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~ 329 (575)
+-++.+.+-...++++++|+++.....+..--.+.+++++-|. .+++|.++||..
T Consensus 20 qt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~----------s~~~LGkAcgi~ 74 (84)
T PRK13600 20 ETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFK----------SKHALGKHVGIN 74 (84)
T ss_pred HHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEC----------CHHHHHHHhCCC
Confidence 3455565566889999999999877655432222234454432 377888999854
No 50
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=29.12 E-value=1.1e+02 Score=27.98 Aligned_cols=58 Identities=26% Similarity=0.304 Sum_probs=39.7
Q ss_pred hhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHhC-cccCccHHHHHHHHHHHhhh
Q 008181 391 FDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEG-IVPGGGVALLYATKALENLK 461 (575)
Q Consensus 391 ~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~~g-vvpGGGa~E~~l~~~L~~~~ 461 (575)
.++..++.+.++|- ..++|++++++-...-++.....- -|.|.|++-.+.+.+|+..+
T Consensus 70 ~~~~e~q~kK~KLl-------------~mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqamS 128 (140)
T PF07526_consen 70 AERQELQRKKAKLL-------------SMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAMS 128 (140)
T ss_pred hhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 34555555655542 457788877777777776666654 78899999888887776543
No 51
>PRK06683 hypothetical protein; Provisional
Probab=24.18 E-value=2.8e+02 Score=22.77 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=34.0
Q ss_pred HHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCeE
Q 008181 267 LELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEI 330 (575)
Q Consensus 267 le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~i 330 (575)
++.+.+....+||++.|.++...+.+..--....+++.-+ ...++|..+||-++
T Consensus 20 ~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~----------~t~~eLG~A~G~~~ 73 (82)
T PRK06683 20 LEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKV----------ESVRKLGKVAGIQV 73 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEE----------CCHHHHHHHhCCcc
Confidence 4555556689999999999988776642211112334321 13678999998653
No 52
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=21.09 E-value=3.3e+02 Score=22.44 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=34.1
Q ss_pred HHHHHHHhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCe
Q 008181 266 LLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGE 329 (575)
Q Consensus 266 ~le~i~~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~ 329 (575)
.++.+.+....+||++.|.++.....+..--....+++. . ....++|..++|-.
T Consensus 16 vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~--~--------~~t~~eLG~A~G~~ 69 (82)
T PRK13601 16 TLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIV--Y--------IDTMKELGVMCGID 69 (82)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEE--E--------eCCHHHHHHHHCCc
Confidence 345565666899999999999887766422111123332 1 12467889998854
No 53
>PTZ00072 40S ribosomal protein S13; Provisional
Probab=20.09 E-value=2.4e+02 Score=25.93 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhhCCCChHHHHHHHHHH----------HHHHHHHHHhhcccCCCHHHHHHHHHHhc
Q 008181 126 TQAILTEGCKSVAAGVNVMDLRSGIKMA----------IDAVISDLKSRAQMISTPEEITQVATISA 182 (575)
Q Consensus 126 a~~Ll~~~~~li~~gi~p~~I~~g~~~a----------~~~~l~~L~~~s~~v~~~~~L~~va~ts~ 182 (575)
..++-+...++-++|+.|+.|---++-- .+.+.++|++...--+-.|+|+.+.+-+.
T Consensus 27 ~eeVe~~I~klaKkG~~pSqIG~iLRD~~gi~~vk~vtG~kI~rILk~~Glap~iPeDly~LikKAv 93 (148)
T PTZ00072 27 SSEVEDQICKLAKKGLTPSQIGVILRDSMGIPQVKNVTGSKILRILKKNGLAPEIPEDLYFLIKKAV 93 (148)
T ss_pred HHHHHHHHHHHHHCCCCHhHhhhhhhhccCccceeeccchHHHHHHHhcCCCCCCchHHHHHHHHHH
Confidence 3566677788888999898887666543 36788888887654455778888887654
Done!