BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008182
(575 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
Family Transporter.
pdb|2XUT|B Chain B, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
Family Transporter.
pdb|2XUT|C Chain C, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
Family Transporter
Length = 524
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 116/482 (24%), Positives = 199/482 (41%), Gaps = 61/482 (12%)
Query: 14 SPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTM------HLPSATSANIV 67
SP D K +P ++ E CER S G+ L +L+ + L A + ++
Sbjct: 3 SPVDAPKWPRQIP--YIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVF 60
Query: 68 TDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETA 127
F+ + LLGG++AD F G+Y TI + + +G LA+
Sbjct: 61 HSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE-------------- 106
Query: 128 THTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYXXXXXX 187
H+ + GF Y L+LIALG+GG+K VS F DQFD+ + K Q A+
Sbjct: 107 -HSVQ---GF-----YTGLFLIALGSGGIKPLVSSFMGDQFDQSN-KSLAQKAF--DMFY 154
Query: 188 XXISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRY-KKSSGSPIV 246
I+ G+ A + + +V +GI V MF+A + F G KRY + P
Sbjct: 155 FTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDP-- 212
Query: 247 HIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAA------IVAEGDF 300
H F ++ + K++ N+G++ S + L A ++ G
Sbjct: 213 HGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFV 272
Query: 301 EAGST---PNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERS 357
AG++ K +V+ V+ V R+L ++A FW+ + Q + + QA M +
Sbjct: 273 GAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP 332
Query: 358 IGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGM 417
+F A++ L + L++ L + + ++RM + L
Sbjct: 333 ------------QWFEPAMMQAL---NPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMG 377
Query: 418 AAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKG 477
A A+ + V + +S+F I + L+ GE + L+F +++PK
Sbjct: 378 AGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKA 437
Query: 478 MK 479
MK
Sbjct: 438 MK 439
>pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In
An Inward Open Conformation.
pdb|4APS|B Chain B, Crystal Structure Of A Pot Family Peptide Transporter In
An Inward Open Conformation
Length = 491
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 89/410 (21%), Positives = 159/410 (38%), Gaps = 97/410 (23%)
Query: 34 ELCERLSTMGIAVNLVTYL-----VGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF 88
E+ ER S G+ L+ Y+ G +H+ AT+A+I+ + +L +GGF+AD
Sbjct: 22 EMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRI 81
Query: 89 LGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYL 148
+G A G+L M+ + P F L+ ++ L
Sbjct: 82 IG--------ARPAVFWGGVLIMLGHIVLALP----------------FGASALFGSIIL 117
Query: 149 IALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYXXXXXXXXISLGTLMAVTVLVYIQDEI 208
I +GTG LK +VS +DE D + + I+LG +A ++ Q+
Sbjct: 118 IIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFS----IFVFGINLGAFIAPLIVGAAQEAA 173
Query: 209 SRSVGYGICSVAMFMAIIIFLAGTKR-----YRYKKSSGSP-------------IVHIFQ 250
V + + ++ MF+ ++++ G K+ Y +P +
Sbjct: 174 GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIA 233
Query: 251 VIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWK 310
+IV LP + +L T A I F+F W
Sbjct: 234 IIVVMNLVGWNSLPAYINLL---TIVAIAI---PVFYF-------------------AWM 268
Query: 311 LCS--VTSVEEVKMVARLLPIWATTIIFWTTYAQ----MITFSVEQATTMERSIGRFQIP 364
+ S VTS E +++V+ +P++ ++FW Q + TF+ E+ + + FQ
Sbjct: 269 ISSVKVTSTEHLRVVSY-IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQ-- 325
Query: 365 AGSLTVFFVSAILITLAVYDRLIMPLWKKW-KGKPGFTNLQRMAIGLVLS 413
SL F+ +Y LW W K +P ++ + A+GL+ +
Sbjct: 326 --SLNPLFI-------MLYTPFFAWLWTAWKKNQP--SSPTKFAVGLMFA 364
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 122 PCKETATHTCEQASGFQMGVLYIAL-YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 180
P KE + Q G G++ AL YLIA G G ++ SGF ++ + E + ++
Sbjct: 80 PAKEVVGYVIAQVVG---GIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLS 136
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 122 PCKETATHTCEQASGFQMGVLYIAL-YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 180
P KE + Q G G++ AL YLIA G G ++ SGF ++ + E + ++
Sbjct: 80 PAKEVVGYVIAQVVG---GIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLS 136
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 122 PCKETATHTCEQASGFQMGVLYIAL-YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 180
P KE + Q G G++ AL YLIA G G ++ SGF ++ + E + ++
Sbjct: 80 PAKEVVGYVIAQVVG---GIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLS 136
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 122 PCKETATHTCEQASGFQMGVLYIAL-YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 180
P KE + Q G G++ AL YLIA G G ++ SGF ++ + E + ++
Sbjct: 80 PAKEVVGYVIAQVVG---GIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLS 136
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 122 PCKETATHTCEQASGFQMGVLYIAL-YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 180
P KE + Q G G++ AL YLIA G G ++ SGF ++ + E + ++
Sbjct: 80 PAKEVVGYVIAQVVG---GIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLS 136
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 122 PCKETATHTCEQASGFQMGVLYIAL-YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 180
P KE + Q G G++ AL YLIA G G ++ SGF ++ + E + ++
Sbjct: 80 PAKEVVGYVIAQVVG---GIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLS 136
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 122 PCKETATHTCEQASGFQMGVLYIAL-YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 180
P KE + Q G G++ AL YLIA G G ++ SGF ++ + E + ++
Sbjct: 77 PAKEVVGYVIAQVVG---GIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLS 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,654,779
Number of Sequences: 62578
Number of extensions: 543368
Number of successful extensions: 1278
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1269
Number of HSP's gapped (non-prelim): 9
length of query: 575
length of database: 14,973,337
effective HSP length: 104
effective length of query: 471
effective length of database: 8,465,225
effective search space: 3987120975
effective search space used: 3987120975
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)