Query 008182
Match_columns 575
No_of_seqs 177 out of 2586
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 20:06:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008182.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008182hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 3.3E-31 1.1E-35 286.0 30.9 446 19-553 7-477 (491)
2 2xut_A Proton/peptide symporte 100.0 4.7E-31 1.6E-35 287.3 23.7 483 21-555 8-510 (524)
3 1pw4_A Glycerol-3-phosphate tr 100.0 2.5E-27 8.7E-32 252.0 21.9 401 24-549 27-435 (451)
4 3o7q_A L-fucose-proton symport 99.9 6.5E-25 2.2E-29 232.6 31.5 360 21-508 22-408 (438)
5 4gc0_A D-xylose-proton symport 99.9 3.7E-24 1.3E-28 230.6 23.7 413 60-561 54-476 (491)
6 2gfp_A EMRD, multidrug resista 99.9 7.9E-24 2.7E-28 219.9 17.2 347 28-506 3-351 (375)
7 2cfq_A Lactose permease; trans 99.9 7.4E-23 2.5E-27 216.5 12.8 392 25-550 7-402 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 1.4E-12 4.8E-17 137.9 13.4 179 25-231 252-433 (451)
9 3o7q_A L-fucose-proton symport 99.3 3E-11 1E-15 127.2 16.5 168 25-226 258-427 (438)
10 2cfq_A Lactose permease; trans 99.3 8.6E-12 2.9E-16 131.3 11.4 178 25-233 220-401 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 7.4E-11 2.5E-15 126.4 13.1 187 26-235 284-475 (491)
12 4gc0_A D-xylose-proton symport 99.0 1.4E-08 4.8E-13 108.5 19.1 183 27-235 278-466 (491)
13 2gfp_A EMRD, multidrug resista 98.9 3.3E-10 1.1E-14 116.9 1.1 164 25-218 199-363 (375)
14 2xut_A Proton/peptide symporte 98.2 8.7E-06 3E-10 87.5 12.7 136 367-546 58-197 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=3.3e-31 Score=285.97 Aligned_cols=446 Identities=20% Similarity=0.256 Sum_probs=302.0
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhc-----CCCCchhhHHHHHHHHHHHHHHHHHHHHHhhc-ccchH
Q 008182 19 SKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGT-----MHLPSATSANIVTDFMGTSFLLCLLGGFLADT-FLGRY 92 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr-~~Gr~ 92 (575)
..++++|.++.+++..+++.+++|++.+.++.|+.++ +|++..+.+++.+.+.++..++++++|+++|| + |||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r 85 (491)
T 4aps_A 7 TFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GAR 85 (491)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHH
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cch
Confidence 3456788899999999999999999999999999988 99999999999999999999999999999999 8 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCC
Q 008182 93 KTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKD 172 (575)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 172 (575)
+++.++.++.+++.+++++++ +...++++|++.|+|.+...+...++++|++|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 141 (491)
T 4aps_A 86 PAVFWGGVLIMLGHIVLALPF------------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD 141 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC------------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHhh------------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc
Confidence 999999999999999888763 36678999999999999999999999999999887
Q ss_pred hHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCcccccc---CCCC-CchhHH
Q 008182 173 EKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYK---KSSG-SPIVHI 248 (575)
Q Consensus 173 ~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~ 248 (575)
++ |+.++++++.+.++|..++|.+++++.+..+|+++|++.++..+++++..++..++...+ ++++ ....+.
T Consensus 142 ~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
T 4aps_A 142 RR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEV 217 (491)
T ss_dssp TH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHH
T ss_pred cc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchh
Confidence 44 778888899999999999999999999989999999998877777666655443332211 1111 111111
Q ss_pred HHHHHH--------------HHHhccccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccc
Q 008182 249 FQVIVA--------------AIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSV 314 (575)
Q Consensus 249 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (575)
.+.... .....+. +..+................. ...|+. ..
T Consensus 218 ~~~~~~~g~~l~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~ 273 (491)
T 4aps_A 218 KPLLVKVSLAVAGFIAIIVVMNLVGWN-------------------SLPAYINLLTIVAIAIPVFYF----AWMISS-VK 273 (491)
T ss_dssp HHHHHHCCCCCHHHHHHHHHHHHHSSC-------------------CTTHHHHHHHHHHHHHHHHHH----HHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCc-------------------ccccchhhhhHHHHHHHHHHH----HHHhhc-cc
Confidence 110000 0000000 000000000000000000000 000000 00
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhc-ccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhh
Q 008182 315 TSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQAT-TMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKK 393 (575)
Q Consensus 315 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r 393 (575)
....++++.......++....++..+.+....+..+.. ..+.+ ....+.+.....+..++..++.+++.+++.||
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r 349 (491)
T 4aps_A 274 VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKN 349 (491)
T ss_dssp --------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhcc
Confidence 01122333444455556666667766666554332221 12222 13456677788888888888888887766655
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheeccc
Q 008182 394 WKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITK 473 (575)
Q Consensus 394 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~ 473 (575)
.......+..+.++.+++++++....... +.+...+.+++++.+++.+++++...|..+.++.+.
T Consensus 350 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 414 (491)
T 4aps_A 350 -----QPSSPTKFAVGLMFAGLSFLLMAIPGALY----------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKL 414 (491)
T ss_dssp --------CHHHHHHHHHHHHHHHTTTHHHHHHC----------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHHHHHhc----------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 24456667788888888888777653210 011134666778889999999999999999999999
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 008182 474 SPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKP 553 (575)
Q Consensus 474 ~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~~ 553 (575)
+|++.||+++|++++...+|..+++.+.+.+.+. +....|++.++++++..++.+++.++.++
T Consensus 415 ~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 415 APKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp TTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998876431 12455777788887777777666655443
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=4.7e-31 Score=287.25 Aligned_cols=483 Identities=21% Similarity=0.354 Sum_probs=293.8
Q ss_pred CCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCC------CCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Q 008182 21 TGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMH------LPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKT 94 (575)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~ 94 (575)
+.++|.++.+++..++..+++|++...++.|+.+++| ++..+.+++.+++.++..++.+++|+++||++|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~ 87 (524)
T 2xut_A 8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT 87 (524)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 3456788889999999999999999999999999999 9999999999999999999999999999996699999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChH
Q 008182 95 IAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEK 174 (575)
Q Consensus 95 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 174 (575)
+.++.++..++.++++++. .+...++++|++.|++.+...+...++++|++|+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-- 142 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFE-----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN-- 142 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTS-----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT--
T ss_pred HHHHHHHHHHHHHHHHHhc-----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc--
Confidence 9999999999998888763 036778899999999999999999999999999988
Q ss_pred hhhhhhhh---hhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHH
Q 008182 175 EKTQMAYF---FSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQV 251 (575)
Q Consensus 175 ~~~~r~~~---~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (575)
|++. +++.+.+.++|..++|.+++++.+..+|+++|++.++..+++.+..++..++.+++++++++..+..+.
T Consensus 143 ----r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (524)
T 2xut_A 143 ----KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPV 218 (524)
T ss_dssp ----TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC------------
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHH
Confidence 7544 455888999999999999999998889999999988877776666655444433222222221111111
Q ss_pred HHHHHHhccccCCCCccccccCCccc---ccccCCcchhhhhHHhhhhcCCcCCCCCCCCC-------ccccchhhhhHH
Q 008182 252 IVAAIKKRKMDLPCNVGMLYEDTPEA---SRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPW-------KLCSVTSVEEVK 321 (575)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 321 (575)
.....+++....+ ......+..... ......+................+ .....+| +.++..+.++++
T Consensus 219 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (524)
T 2xut_A 219 IRSALLTKVEGKG-NIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMG-FVGAGASLQLERARKSHPDAAVDGVR 296 (524)
T ss_dssp --------CTTHH-HHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHH-HHHTGGGTHHHHSCCSCCSSSSTTTT
T ss_pred HHHHHhhhhcccC-ccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhc-ccccchhhHHhhhhccccHhHHHHHH
Confidence 1111111100000 000000000000 000000000000000000000000 0000111 000111223334
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCC
Q 008182 322 MVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFT 401 (575)
Q Consensus 322 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~ 401 (575)
+.+.....+.....++..+.+..+.+..+....+.+. + .+.+.+...+.+..++..++.+++..+..+|+.+ +.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 371 (524)
T 2xut_A 297 SVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV--KLT 371 (524)
T ss_dssp THHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC--------------C
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC--CCC
Confidence 4444455555556666666666655554433333221 1 2345566667777777888887775555455432 245
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHH
Q 008182 402 NLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTM 481 (575)
Q Consensus 402 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~ 481 (575)
..+.+.+|.++.+++++.++...... +.+...+.+++++.+++.++++++..|..++++.+.+|++.||+
T Consensus 372 ~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~ 441 (524)
T 2xut_A 372 ALRKMGAGIAITGLSWIVVGTIQLMM----------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGT 441 (524)
T ss_dssp CHHHHHTHHHHHHHHHHTTTTTTTTT----------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhH
Confidence 56667788888888877665432100 00112456677888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccC-CCcccchhHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 008182 482 STGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLAD-NINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKK 555 (575)
Q Consensus 482 ~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~~~~ 555 (575)
++|++++...+|+.+++.+.+.+.+..+ .+|.++ ..+. ....|++.+++.+++.++++++.+++++++
T Consensus 442 ~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 442 IMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp THHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 9999999999999999999998754211 123211 0111 123377788888888877777766655443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=2.5e-27 Score=251.99 Aligned_cols=401 Identities=7% Similarity=-0.045 Sum_probs=254.1
Q ss_pred cchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 008182 24 WVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT 103 (575)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 103 (575)
++.++..++..++..+..+.+...++.+ .+++ .+..+.+++.+++.++..++.+++|+++||+ |||++++++.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 3455566666666666666666666555 4567 9999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHH----HhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhh
Q 008182 104 LGTGMLAM----VTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM 179 (575)
Q Consensus 104 ~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 179 (575)
++.+++++ +. +...++++|++.|++.+...+...++++|++|+++ |
T Consensus 104 ~~~~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r 153 (451)
T 1pw4_A 104 AVMLFMGFVPWATS------------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------R 153 (451)
T ss_dssp HHHHHHHHCHHHHS------------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------H
T ss_pred HHHHHHHhhhhccc------------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------h
Confidence 99999988 52 36678999999999999999999999999999888 9
Q ss_pred hhhhhhhhhhHHHhHHHHHHHHhhhccccc-chhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHh
Q 008182 180 AYFFSRFFFFISLGTLMAVTVLVYIQDEIS-RSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKK 258 (575)
Q Consensus 180 ~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (575)
++++++.+.+.++|..++|.+++++.+..+ |+++|++.++..++..++.++..++.+++...++..+
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 221 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE------------ 221 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhh------------
Confidence 999999999999999999999999888888 9999999887776655554443332221111000000
Q ss_pred ccccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhh-hhHHHHHHHHHHHHHHHHHH
Q 008182 259 RKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSV-EEVKMVARLLPIWATTIIFW 337 (575)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 337 (575)
.. .+.+++ .+..+ +...+++....... ++++.....+..+.....+.
T Consensus 222 -------~~-----~~~~~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (451)
T 1pw4_A 222 -------YK-----NDYPDD-YNEKA-------------------EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRY 269 (451)
T ss_dssp -------TC-----CC---------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred -------hc-----cccccc-chhhh-------------------hcccccccchHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 00 000000 00000 00000000000000 11111111111112222211
Q ss_pred HhhhcccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHH-HH
Q 008182 338 TTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSI-VG 416 (575)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~-~~ 416 (575)
..... ...+..+. .+.+ ....+.+.....+..++..++.+++.+++.+ ++.+.+..+..+.. ++
T Consensus 270 ~~~~~-~~~~~~~~--~g~~----~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~--------~~~~~~~~~~~~~~~~~ 334 (451)
T 1pw4_A 270 GILDW-SPTYLKEV--KHFA----LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR--------GNRGATGVFFMTLVTIA 334 (451)
T ss_dssp HHHHH-HHHHBTTB--SCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTST--------TCHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHh--cCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHH
Confidence 11111 11111110 1111 1112334455555566666666666544310 11222444444444 44
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHH-HHH
Q 008182 417 MAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSL-GFF 495 (575)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~l-g~~ 495 (575)
++.+.+.. ..+.+.++...++.|++.....+..+.++.+.+|++.||+++|+++....+ |..
T Consensus 335 ~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~ 397 (451)
T 1pw4_A 335 TIVYWMNP-----------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV 397 (451)
T ss_dssp HHHTTSCC-----------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-----------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHH
Confidence 44443210 124445566777888888888888889999999999999999999999999 999
Q ss_pred HHHHHHHhhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhh
Q 008182 496 VSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAV 549 (575)
Q Consensus 496 lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~ 549 (575)
+++.+.+.+.+..+ ....|++.+++.+++.+..+...+
T Consensus 398 ~~~~~~g~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 398 AASAIVGYTVDFFG----------------WDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHHHSSC----------------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC----------------cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998865321 356677778877777776655544
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=6.5e-25 Score=232.62 Aligned_cols=360 Identities=13% Similarity=0.114 Sum_probs=234.4
Q ss_pred CCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 008182 21 TGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAA 100 (575)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~ 100 (575)
+++++.+..+++..++..+..+...+.+ +++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 3345556666666666666665554444 457778999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhh
Q 008182 101 VQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 180 (575)
Q Consensus 101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 180 (575)
+.+++.+++......+ +.+.++++|++.|++.+...+...++++|++|+++ |+
T Consensus 100 ~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~ 152 (438)
T 3o7q_A 100 LYALGAALFWPAAEIM---------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GH 152 (438)
T ss_dssp HHHHHHHHHHHHHHTT---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HH
T ss_pred HHHHHHHHHHhccccc---------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HH
Confidence 9999998883321112 37789999999999999999999999999999999 99
Q ss_pred hhhhhhhhhHHHhHHHHHHHHhhhc-cccc-------------------------chhHHHHHHHHHHHHHHHHHhcC-c
Q 008182 181 YFFSRFFFFISLGTLMAVTVLVYIQ-DEIS-------------------------RSVGYGICSVAMFMAIIIFLAGT-K 233 (575)
Q Consensus 181 ~~~~~~~~~~~ig~~l~~~i~~~l~-~~~~-------------------------~~~~f~~~~~~~~~~~~~~~~~~-~ 233 (575)
+.+++.+.+.++|..++|.+++++. +..+ |+++|++.++..++..+..++.+ |
T Consensus 153 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p 232 (438)
T 3o7q_A 153 FRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFP 232 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999987 5554 89999877666555544443322 2
Q ss_pred cccccCCCCCchhHHHHHHHHHHHhccccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCcccc
Q 008182 234 RYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCS 313 (575)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (575)
+.+++++++++. .....++ ..+
T Consensus 233 ~~~~~~~~~~~~------------------------------------~~~~~~~---~~~------------------- 254 (438)
T 3o7q_A 233 ALQSDNHSDAKQ------------------------------------GSFSASL---SRL------------------- 254 (438)
T ss_dssp CCTTTCCCCSST------------------------------------TSHHHHH---HHH-------------------
T ss_pred cccccccccccc------------------------------------cchhhhH---HHH-------------------
Confidence 111100000000 0000000 000
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhh
Q 008182 314 VTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKK 393 (575)
Q Consensus 314 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r 393 (575)
.++++.....+..+.............+..+..+..+.+. ...+.+..+..+...+..++.+++.+|+.+|
T Consensus 255 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~ 325 (438)
T 3o7q_A 255 ---ARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA------GFAANYLTGTMVCFFIGRFTGTWLISRFAPH 325 (438)
T ss_dssp ---TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred ---HhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 0011111111111122222222212211110211111111 1123344445555556666666665544333
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheeccc
Q 008182 394 WKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITK 473 (575)
Q Consensus 394 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~ 473 (575)
+.+..+.++.+++++.+.+. +..+.+...++.+++.+...|..+++..+.
T Consensus 326 ----------~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 375 (438)
T 3o7q_A 326 ----------KVLAAYALIAMALCLISAFA--------------------GGHVGLIALTLCSAFMSIQYPTIFSLGIKN 375 (438)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHC--------------------CHHHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred ----------HHHHHHHHHHHHHHHHHHHc--------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33566666666666555432 111334456788888888999999998999
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008182 474 SPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVT 508 (575)
Q Consensus 474 ~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~ 508 (575)
.|++ +++++++.. ...+|..+++.+.+.+.+..
T Consensus 376 ~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 376 LGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp CGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred cccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 9977 999999887 66799999999999887654
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.92 E-value=3.7e-24 Score=230.56 Aligned_cols=413 Identities=12% Similarity=0.006 Sum_probs=227.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhh
Q 008182 60 SATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQM 139 (575)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (575)
+.+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.++++++........ ....-...-..+.
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~------~~~~~~~~~a~~~ 126 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSIN------PDNTVPVYLAGYV 126 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSS------SSSSCCGGGGGCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhc------chhHHHHHHhhhH
Confidence 45678999999999999999999999999 9999999999999999999986421100000 0000000012357
Q ss_pred HHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhccc--------ccch
Q 008182 140 GVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDE--------ISRS 211 (575)
Q Consensus 140 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~--------~~~~ 211 (575)
..++++|+++|+|.|...+..+.+++|..|++. |++..++.+.+..+|..+++.++..+... ..|+
T Consensus 127 ~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4gc0_A 127 PEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWR 200 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhH
Confidence 889999999999999999999999999999998 99999999999999999998877666432 2466
Q ss_pred hHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCCCCccccccCCcccccccCCcchhhhhH
Q 008182 212 VGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDK 291 (575)
Q Consensus 212 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 291 (575)
..+.+..+..++.++..... |+.++.-..+...++..+.......+... ..+..+.....+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~-peSp~~L~~~~~~~~a~~~l~~~~~~~~~-----------------~~~~~~~~~~~~~ 262 (491)
T 4gc0_A 201 YMFASECIPALLFLMLLYTV-PESPRWLMSRGKQEQAEGILRKIMGNTLA-----------------TQAVQEIKHSLDH 262 (491)
T ss_dssp HHHHTTHHHHHHHHHHGGGS-CCCHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhhhhhcC-CCChHHHHHcCchhHHHHhHHHhcCCchh-----------------HHHHHHHHHHHHh
Confidence 66655554444333333222 22111000011111111111110000000 0000000000000
Q ss_pred HhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhhcccchhh-hhhccccccccccccccccccc
Q 008182 292 AAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSV-EQATTMERSIGRFQIPAGSLTV 370 (575)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 370 (575)
.. +.. ........++.......... ..+...... ..+. ......... .........
T Consensus 263 ~~--~~~--------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~ 319 (491)
T 4gc0_A 263 GR--KTG--------------GRLLMFGVGVIVIGVMLSIF--QQFVGINVV-LYYAPEVFKTLGAS----TDIALLQTI 319 (491)
T ss_dssp HH--HHT--------------THHHHSCCTHHHHHHHHHHH--HHHTCHHHH-HHHHHHHHHHSSCC----HHHHHHHHH
T ss_pred hh--hhh--------------hHHHHhcccHHHHHHHHHHH--HHHhhhhHH-HhcchHHHHhcCCC----ccchhhHHH
Confidence 00 000 00000001111111111000 000000000 0111 000011100 111112233
Q ss_pred chhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHH
Q 008182 371 FFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIP 450 (575)
Q Consensus 371 ~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 450 (575)
+..+..++...+...+.+|+.|| +.+..+....+++++.++..... ..+....+.
T Consensus 320 ~~~~~~~~~~~~~~~l~dr~Grr----------~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~~~~~ 374 (491)
T 4gc0_A 320 IVGVINLTFTVLAIMTVDKFGRK----------PLQIIGALGMAIGMFSLGTAFYT---------------QAPGIVALL 374 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSH----------HHHHHHHHHHHHHHHHHHHHHHT---------------TCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCc----------chhccchHHHHHHHHHHHHHHhc---------------ccchHHHHH
Confidence 33444445555555555555544 23566777777777666544221 111122222
Q ss_pred HHHHHHHHHH-HhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCcccchhHH
Q 008182 451 QFFLVGAGEA-FIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLF 529 (575)
Q Consensus 451 ~~~l~g~g~~-~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~ 529 (575)
..++...+.. ...|..+.+..|.+|++.|++++|+.+..+.+++++++.+.+.+.+... .. ...+....
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~-------~~---~~~~~~~~ 444 (491)
T 4gc0_A 375 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSW-------LV---AHFHNGFS 444 (491)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHH-------HH---HHHTTCHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---hhhhhhHH
Confidence 2333333322 3346778899999999999999999999999999999988876543211 00 00112345
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCccccc
Q 008182 530 YGLLAILSIINLVIYLICAVWYKPKKPKAGIQ 561 (575)
Q Consensus 530 f~~~a~l~~v~~~~~~~~~~~~~~~~~~~~~~ 561 (575)
|++.+++++++.++.+++.+|+|+++.|+.++
T Consensus 445 ~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~ 476 (491)
T 4gc0_A 445 YWIYGCMGVLAALFMWKFVPETKGKTLEELEA 476 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGG
T ss_pred HHHHHHHHHHHHHHHHheecCCCCCCHHHHHH
Confidence 78889999999999999999999998776443
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.91 E-value=7.9e-24 Score=219.95 Aligned_cols=347 Identities=12% Similarity=0.035 Sum_probs=228.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Q 008182 28 ALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTG 107 (575)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~ 107 (575)
+.+++..++..+......+.++.+ .+++|.+..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 445566677777776666666664 568999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhh
Q 008182 108 MLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF 187 (575)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 187 (575)
+++++++ ...+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+
T Consensus 81 ~~~~~~~------------------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 130 (375)
T 2gfp_A 81 VAVTTSS------------------------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLN 130 (375)
T ss_dssp HHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHH
T ss_pred HHHHhcc------------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHH
Confidence 9888733 6778999999999999999999999999999888 999999999
Q ss_pred hhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCCCCc
Q 008182 188 FFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNV 267 (575)
Q Consensus 188 ~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (575)
...++|..++|.+++++.+..+|++.|++.++..++..+...+..|+.++++++++
T Consensus 131 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 186 (375)
T 2gfp_A 131 MGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT------------------------ 186 (375)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc------------------------
Confidence 99999999999999999998899999998777655544432222221111000000
Q ss_pred cccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHH-HHHHHHHHHHHHhhhcccch
Q 008182 268 GMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARL-LPIWATTIIFWTTYAQMITF 346 (575)
Q Consensus 268 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~ 346 (575)
+...++ ++..+.+.+... +..+.............+ .
T Consensus 187 ------------------------------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 224 (375)
T 2gfp_A 187 ------------------------------------RLLTSY-----KTLFGNSGFNCYLLMLIGGLAGIAAFEACSG-V 224 (375)
T ss_dssp ------------------------------------CTTTCS-----THHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-C
T ss_pred ------------------------------------cHHHHH-----HHHhcCcchHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 000001 011112222222 112222222222211111 1
Q ss_pred hhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHH-HHHHHHHHHHHHH
Q 008182 347 SVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVL-SIVGMAAAALVER 425 (575)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~ 425 (575)
+..+..+.+. ...+.+.....+..++..++.+++ .+|.+ + ++..+..+ ...+.........
T Consensus 225 ~~~~~~g~~~------~~~g~~~~~~~~~~~~~~~~~~~l----~~r~~------~--~~~~~~~~~~~~~~~~~~~~~~ 286 (375)
T 2gfp_A 225 LMGAVLGLSS------MTVSILFILPIPAAFFGAWFAGRP----NKRFS------T--LMWQSVICCLLAGLLMWIPDWF 286 (375)
T ss_dssp SSHHHHHHHH------HHHHHHHHTHHHHHHHHHHHHHTT----TTHHH------H--HHHHHHHHHHHTSSSSSHHHHH
T ss_pred HHHHHhCCCH------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHH------H--HHHHHHHHHHHHHHHHHHHhhh
Confidence 1111111111 112233344444444444444433 44421 1 23444433 2222222111110
Q ss_pred HHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008182 426 KRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVK 505 (575)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~ 505 (575)
. ..+.+.++...++.+++.+...|....+..+..| +.||+++|+.+..+.+|..+++.+.+.+.
T Consensus 287 ~---------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 350 (375)
T 2gfp_A 287 G---------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLP 350 (375)
T ss_dssp H---------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred c---------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 1133345567788899999999999999999998 89999999999999999999999988765
Q ss_pred h
Q 008182 506 K 506 (575)
Q Consensus 506 ~ 506 (575)
+
T Consensus 351 ~ 351 (375)
T 2gfp_A 351 Q 351 (375)
T ss_dssp H
T ss_pred c
Confidence 3
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.88 E-value=7.4e-23 Score=216.47 Aligned_cols=392 Identities=10% Similarity=0.026 Sum_probs=222.2
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182 25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL 104 (575)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~ 104 (575)
|.++.+....++..+++..+.++++.|+++++|++..+.+++.+.+.++..++++++|+++||+ ||||+++++..+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4566666666777777777788999999999999999999999999999999999999999999 999999998877655
Q ss_pred HHHHH---HHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182 105 GTGML---AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 181 (575)
Q Consensus 105 ~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 181 (575)
+.... .++... ...+..++.+.+++.+...+...+...+..++..+ .++.
T Consensus 86 ~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~ 138 (417)
T 2cfq_A 86 MFAPFFIFIFGPLL-----------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNF 138 (417)
T ss_dssp CHHHHHHHTHHHHH-----------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHH----HHTC
T ss_pred HHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh----hccc
Confidence 32211 222100 00123344455555554444444444444332221 1677
Q ss_pred hhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccc
Q 008182 182 FFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKM 261 (575)
Q Consensus 182 ~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (575)
.++......++|..++|.+++++.+ .+|+..|++.++..++..+..++..++ +++..+.
T Consensus 139 ~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~~---------------- 197 (417)
T 2cfq_A 139 EFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSATV---------------- 197 (417)
T ss_dssp CHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSSCS----------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----ccccccc----------------
Confidence 7778778889999999999999877 589999987665533333322221111 1000000
Q ss_pred cCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 008182 262 DLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYA 341 (575)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 341 (575)
++.. +. ..+..+.-+... ..++++ +.............+..+.
T Consensus 198 --~~~~---------~~---~~~~~~~~~~~~----------------------~~~~~~-~~~~~~~~~~~~~~~~~~~ 240 (417)
T 2cfq_A 198 --ANAV---------GA---NHSAFSLKLALE----------------------LFRQPK-LWFLSLYVIGVSCTYDVFD 240 (417)
T ss_dssp --SSSS---------SS---CCCCCCHHHHHH----------------------HTTCHH-HHHHHHHHHHHHHHHHHHH
T ss_pred --cccc---------cc---ccccccHHHHHH----------------------HhcCCc-hhhHHHHHHHHHHHHHHHH
Confidence 0000 00 000000000000 001111 1111111111111222222
Q ss_pred cccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHH
Q 008182 342 QMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAA 421 (575)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 421 (575)
+....+..+ .......+ ....+....++.+...+...+.+++.+|+.+| +.+..+.++.+++++.++
T Consensus 241 ~~~~~~~~~--~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~----------~~l~~~~~~~~~~~~~~~ 307 (417)
T 2cfq_A 241 QQFANFFTS--FFATGEQG-TRVFGYVTTMGELLNASIMFFAPLIINRIGGK----------NALLLAGTIMSVRIIGSS 307 (417)
T ss_dssp HHHHHHHHH--TSSSHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH----------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH--HHhccCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH----------HHHHHHHHHHHHHHHHHH
Confidence 221111111 11100000 00112233444445555556666665555443 235556666666554443
Q ss_pred HHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHH-HHHHHHHHHHHHHHH
Q 008182 422 LVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGL-FLTTLSLGFFVSSFL 500 (575)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg~~lg~~l 500 (575)
+. .+.+.+++..++.+++.....+..+.++.+..|++.||++.++ ++..+++|+.+++.+
T Consensus 308 ~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l 368 (417)
T 2cfq_A 308 FA-------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL 368 (417)
T ss_dssp TC-------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHH
T ss_pred Hh-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 21 1233444555566777667777788899999999999999998 588889999999999
Q ss_pred HHhhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhh
Q 008182 501 VAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVW 550 (575)
Q Consensus 501 ~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~ 550 (575)
.|.+.+.. +....|.+.+++.+++.++.+...++
T Consensus 369 ~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 369 AGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHTHHHHS----------------HHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 99776421 13456777777777777666554443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.39 E-value=1.4e-12 Score=137.92 Aligned_cols=179 Identities=17% Similarity=0.088 Sum_probs=150.0
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHH
Q 008182 25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF-LGRYKTIAIFAAVQT 103 (575)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~-~Gr~~~~~~~~~~~~ 103 (575)
|.++.+++..++..+.++++..+++.|+++.+|++..+.+++.+...++..++.++.|+++||+ .|||+.+.++..+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 5677888888888899999999999999998999999999999999999999999999999994 288888887776665
Q ss_pred -HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhh
Q 008182 104 -LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 182 (575)
Q Consensus 104 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 182 (575)
++.+++.+. +. .+...+.+..++.|++.+...+....++.|.+|++. |+++
T Consensus 332 ~~~~~~~~~~---~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 383 (451)
T 1pw4_A 332 TIATIVYWMN---PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTA 383 (451)
T ss_dssp HHHHHHTTSC---CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHH
T ss_pred HHHHHHHHHh---cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhH
Confidence 555544432 10 135556677778888888888888899999999988 9999
Q ss_pred hhhhhhhHHH-hHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhc
Q 008182 183 FSRFFFFISL-GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAG 231 (575)
Q Consensus 183 ~~~~~~~~~i-g~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~ 231 (575)
+++.+...++ |..++|.+.|++.+..||+..|++.++..+++.++.++.
T Consensus 384 ~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 384 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999998888777766665544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.30 E-value=3e-11 Score=127.23 Aligned_cols=168 Identities=16% Similarity=0.124 Sum_probs=135.9
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHHH-hhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 008182 25 VPAALVLGIELCERLSTMGIAVNLVTY-LVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT 103 (575)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 103 (575)
|.++..++..++.....+++..+++.| +++.+|++..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 467777777788888888888999999 8888899999999999999999999999999999998 99999999998888
Q ss_pred HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182 104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 183 (575)
Q Consensus 104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 183 (575)
++.++..+.++ .. ..+..++.+++.+...|...++..|.+|++ ++.+.
T Consensus 337 ~~~~~~~~~~~------------------------~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 384 (438)
T 3o7q_A 337 ALCLISAFAGG------------------------HV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGS 384 (438)
T ss_dssp HHHHHHHHCCH------------------------HH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHH
T ss_pred HHHHHHHHcCC------------------------cH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchh
Confidence 88777765521 22 233447788888888899999988988844 44555
Q ss_pred hhhhhhHHHhHHHHHHHHhhhccccc-chhHHHHHHHHHHHHHH
Q 008182 184 SRFFFFISLGTLMAVTVLVYIQDEIS-RSVGYGICSVAMFMAII 226 (575)
Q Consensus 184 ~~~~~~~~ig~~l~~~i~~~l~~~~~-~~~~f~~~~~~~~~~~~ 226 (575)
++.. ...+|+.++|.+.|++.+..| ++..|++.++..++..+
T Consensus 385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 5544 456999999999999999888 99999887655444433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.29 E-value=8.6e-12 Score=131.34 Aligned_cols=178 Identities=10% Similarity=0.024 Sum_probs=130.9
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCC---CchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 008182 25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHL---PSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV 101 (575)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 101 (575)
|.++..++..++....++....+++.|+.+.++. +..+.+...++..+...++.++.|+++||+ |||+++.++..+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~ 298 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence 3444444444444455555556788888776653 244556777777778888999999999999 999999988887
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182 102 QTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 181 (575)
Q Consensus 102 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 181 (575)
.+++.+++++.. +...+++..++.+++.+...+....+++|.+|++. |++
T Consensus 299 ~~~~~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~ 348 (417)
T 2cfq_A 299 MSVRIIGSSFAT------------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SAT 348 (417)
T ss_dssp HHHHHHHHTTCC------------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHH
T ss_pred HHHHHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHH
Confidence 777765554431 24445555666676666666666789999999888 999
Q ss_pred hhhh-hhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCc
Q 008182 182 FFSR-FFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTK 233 (575)
Q Consensus 182 ~~~~-~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 233 (575)
+++. ++...++|+.++|.++|++.+..|++..|.+.++..+++.++.+...+
T Consensus 349 ~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 349 IYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9988 578889999999999999988888999998888777776666554443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.20 E-value=7.4e-11 Score=126.41 Aligned_cols=187 Identities=11% Similarity=-0.001 Sum_probs=140.5
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH-----HHHH
Q 008182 26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIA-----IFAA 100 (575)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~-----~~~~ 100 (575)
..+.+++..++....++.....++.|+.+.++.+..+.+.+.....+...++.++.|+++||+ |||+... ++..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence 445555566666677777788899999998898888888888999999999999999999998 9986554 6777
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhh
Q 008182 101 VQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 180 (575)
Q Consensus 101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 180 (575)
+.+++.+++.+...... .....+...+.+..++.+++.+...+....++.|.+|++. |+
T Consensus 363 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g 421 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYG---------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NS 421 (491)
T ss_dssp HHHHHHTTTHHHHHHCC---------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SS
T ss_pred HHHHHHHHHHHHHHhcC---------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HH
Confidence 77777666655421100 0111235566677788899999988999999999999999 99
Q ss_pred hhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccc
Q 008182 181 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRY 235 (575)
Q Consensus 181 ~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 235 (575)
++.++.+...++|..+++.+.+++.+ .++...|++.++..+++.+..++..++.
T Consensus 422 ~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 422 QMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp SSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998876 4677788877777666666655555443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.98 E-value=1.4e-08 Score=108.50 Aligned_cols=183 Identities=10% Similarity=0.042 Sum_probs=125.2
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 008182 27 AALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGT 106 (575)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~ 106 (575)
........++..+..+.......+++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~ 356 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGM 356 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHH
Confidence 33333444444444333444455566667888888888888888888999999999999999 99999999998888887
Q ss_pred HHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhh
Q 008182 107 GMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF 186 (575)
Q Consensus 107 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 186 (575)
+.++....... ........+..+..+.+. ...+....+.+|.+|.+. |++++++.
T Consensus 357 ~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~g~~ 411 (491)
T 4gc0_A 357 FSLGTAFYTQA------------------PGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKALAIA 411 (491)
T ss_dssp HHHHHHHHTTC------------------CHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHHHHH
T ss_pred HHHHHHHhccc------------------chHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHHHHH
Confidence 76665432111 011112222222223332 234667788999999999 99999999
Q ss_pred hhhHHHhHHHHHHHHhhhccc------ccchhHHHHHHHHHHHHHHHHHhcCccc
Q 008182 187 FFFISLGTLMAVTVLVYIQDE------ISRSVGYGICSVAMFMAIIIFLAGTKRY 235 (575)
Q Consensus 187 ~~~~~ig~~l~~~i~~~l~~~------~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 235 (575)
.....+|+.+++.+.+.+.+. .++...|++.++..+++.+..++..|+.
T Consensus 412 ~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 412 VAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 999999999998887776542 3466678887777777776666655543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.87 E-value=3.3e-10 Score=116.89 Aligned_cols=164 Identities=11% Similarity=-0.026 Sum_probs=127.3
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH-HH
Q 008182 25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV-QT 103 (575)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~-~~ 103 (575)
|.++...+..++.....+.+..+++.|+++.+|+++.+.+.+.+...++..++.++.|+++||+ || + +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~-~-~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-ST-L-MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HH-H-HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-H-HHHHHHHHHH
Confidence 4567777778888888888889999999988999999999999999999999999999999998 87 2 3333333 23
Q ss_pred HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182 104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 183 (575)
Q Consensus 104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 183 (575)
.+..+...... +. .+.+.+++..++.+++.+...+...++..|.+| ++ |+++.
T Consensus 276 ~~~~~~~~~~~-~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~ 328 (375)
T 2gfp_A 276 AGLLMWIPDWF-GV-------------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAG 328 (375)
T ss_dssp TSSSSSHHHHH-HH-------------------HHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHH
T ss_pred HHHHHHHHhhh-cc-------------------ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHH
Confidence 33222121110 00 135556677788899999999999999999887 55 99999
Q ss_pred hhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHH
Q 008182 184 SRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICS 218 (575)
Q Consensus 184 ~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~ 218 (575)
++.+...++|..++|.+.+.+.+..+|+..+++.+
T Consensus 329 g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 329 ALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 99999999999999999999988777887776643
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.18 E-value=8.7e-06 Score=87.51 Aligned_cols=136 Identities=18% Similarity=0.210 Sum_probs=97.4
Q ss_pred ccccchhHHHHHHHHHHhHHHhhh-hhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccee
Q 008182 367 SLTVFFVSAILITLAVYDRLIMPL-WKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSV 445 (575)
Q Consensus 367 ~~~~~~~~~~~i~~~l~~~~~~~l-~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (575)
.+.....+...+..++.+++.+++ .+| +.+.++.++.+++.+...+. +.+.
T Consensus 58 ~~~~~~~~~~~~~~~~~G~l~dr~~g~r----------~~~~~~~~~~~~~~~~~~~~------------------~~~~ 109 (524)
T 2xut_A 58 DVFHSFVIGVYFFPLLGGWIADRFFGKY----------NTILWLSLIYCVGHAFLAIF------------------EHSV 109 (524)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHTTSSCSH----------HHHHHHHHHHHHHHHHHHHT------------------SSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcch----------HHHHHHHHHHHHHHHHHHHh------------------cccH
Confidence 345555666666667777775554 333 34677877877777776653 1145
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHH---HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCc
Q 008182 446 FLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGL---FLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNIN 522 (575)
Q Consensus 446 ~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~---~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~ 522 (575)
+.+++..++.|++.+...|...+++.+.+|++.|+++++. ++....+|..+++.+.+.+.+.. +|
T Consensus 110 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g~------ 177 (524)
T 2xut_A 110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------GA------ 177 (524)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------CH------
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cH------
Confidence 5677788899999999999999999999999999877776 88888999999999988775421 23
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHh
Q 008182 523 RGRLDLFYGLLAILSIINLVIYLI 546 (575)
Q Consensus 523 ~~~~~~~f~~~a~l~~v~~~~~~~ 546 (575)
...|++.+++.++..+..+.
T Consensus 178 ----~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 178 ----AVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHS
T ss_pred ----HHHHHHHHHHHHHHHHHHHH
Confidence 56667666666665554443
Done!